BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038395
         (480 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/479 (76%), Positives = 421/479 (87%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D DLYV T L+D+YARGGDV+SA++LF TMP++SLVSLT MLTCYAK GE+ AAR
Sbjct: 151 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 210

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           VLFD MEE+D VCWNVMIDGY Q+G+ NEALVLFRRML  K +PNEVT ++VLSACGQ+G
Sbjct: 211 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 270

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALESGRW+HSYIEN+  I+ NV VGTAL++MYSKCGSL+DARLVFD+++DKDVV WNSMI
Sbjct: 271 ALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 329

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGYAMHGF ++ALQLF  MCR+ L P++ITFIG+LSAC H+G V EG   FN MKDEY I
Sbjct: 330 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 389

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EPK+EHYGCMVNLL RAG VE+AY+LV +M IEPD VLWGTLLGACRLHG IALGEKI E
Sbjct: 390 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 449

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+ QNLANSGTY+LLSNIYAA+GNWDGVAR+RT+MK+ GV+KEPGCSSIE++NKVHEFL
Sbjct: 450 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 509

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AG L HPK KEIYMMLEEINGWLK+ GY PQT IVLHDIGE +K+ SLEVHSEKLA+AFG
Sbjct: 510 AGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFG 569

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LI+TQPGT+IKIVKNLRVC DCH V KLISK TGRKI++RDRNRFHHFVNG+CSCGDYW
Sbjct: 570 LINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 36/271 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA  G +  +  LF   +   V  W  +I G+A  GL  +AL  + +ML + VEPN  T 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 111 VAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVG----------------------- 146
            ++L  C     +E G+ +HS  ++   +  + V+ G                       
Sbjct: 132 SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 187

Query: 147 ------TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
                 TA++  Y+K G L  AR++FD + ++D V WN MI GY  +G   +AL LF  M
Sbjct: 188 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 247

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
            + + KP+++T + +LSAC   G +  G R+ ++  +   I+  V     +V++ S+ G 
Sbjct: 248 LKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGS 306

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +E+A +LV D   + D V W +++    +HG
Sbjct: 307 LEDA-RLVFDKIDDKDVVAWNSMIVGYAMHG 336


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/479 (76%), Positives = 420/479 (87%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D DLYV T L+D+YARGGDV+SA++LF TMP++SLVSLT MLTCYAK GE+ AAR
Sbjct: 98  VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 157

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           VLFD MEE+D VCWNVMIDGY Q+G+ NEALVLFRRML  K +PNEVT ++VLSACGQ+G
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALESGRW+HSYIEN+  I+ NV VGTAL++MYSKCGSL+DARLVFD+++DKDVV WNSMI
Sbjct: 218 ALESGRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 276

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGYAM GF ++ALQLF  MCR+ L P++ITFIG+LSAC H+G V EG   FN MKDEY I
Sbjct: 277 VGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 336

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EPK+EHYGCMVNLL RAG VE+AY+LV +M IEPD VLWGTLLGACRLHG IALGEKI E
Sbjct: 337 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 396

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+ QNLANSGTY+LLSNIYAA+GNWDGVAR+RT+MK+ GV+KEPGCSSIE++NKVHEFL
Sbjct: 397 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 456

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AG L HPK KEIYMMLEEINGWLK+ GY PQT IVLHDIGE +K+ SLEVHSEKLA+AFG
Sbjct: 457 AGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFG 516

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LI+TQPGT+IKIVKNLRVC DCH V KLISK TGRKI++RDRNRFHHFVNG+CSCGDYW
Sbjct: 517 LINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 133/275 (48%), Gaps = 36/275 (13%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           + V L  +   YA  G +  +  LF   +   V  W  +I G+A  GL  +AL  + +ML
Sbjct: 8   AXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQML 67

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVG------------ 146
            + VEPN  T  ++L  C     +E G+ +HS  ++   +  + V+ G            
Sbjct: 68  TQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVV 123

Query: 147 -----------------TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
                            TA++  Y+K G L  AR++FD + ++D V WN MI GY  +G 
Sbjct: 124 SAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGM 183

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
             +AL LF  M + + KP+++T + +LSAC   G +  G R+ ++  +   I+  V    
Sbjct: 184 PNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGT 242

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +V++ S+ G +E+A +LV D   + D V W +++
Sbjct: 243 ALVDMYSKCGSLEDA-RLVFDKIDDKDVVAWNSMI 276


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/474 (75%), Positives = 414/474 (87%), Gaps = 1/474 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +  ++  T+++  +A  GDV+SA++LF TMP++SLVSLT MLTCYAK GE+ AARVLFD 
Sbjct: 90  NPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 149

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           MEE+D VCWNVMIDGY Q+G+ NEALVLFRRML  K +PNEVT ++VLSACGQ+GALESG
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 209

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           RW+HSYIEN+  I+ NV VGTAL++MYSKCGSL+DARLVFD+++DKDVV WNSMIVGYAM
Sbjct: 210 RWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 268

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HGF ++ALQLF  MCR+ L P++ITFIG+LSAC H+G V EG   FN MKDEY IEPK+E
Sbjct: 269 HGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIE 328

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYGCMVNLL RAG VE+AY+LV +M IEPD VLWGTLLGACRLHG IALGEKI E L+ Q
Sbjct: 329 HYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQ 388

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           NLANSGTY+LLSNIYAA+GNWDGVAR+RT+MK+ GV+KEPGCSSIE++NKVHEFLAG L 
Sbjct: 389 NLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLN 448

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HPK KEIYMMLEEINGWLK+ GY PQT IVLHDIGE +K+ SLEVHSEKLA+AFGLI+TQ
Sbjct: 449 HPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQ 508

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PGT+IKIVKNLRVC DCH V KLISK TGRKI++RDRNRFHHFVNG+CSCGDYW
Sbjct: 509 PGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/479 (72%), Positives = 404/479 (84%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  DLYV T LVD+YARGGDV+ A +LF  MP+RSLVSLTTMLTCY+K GE+  AR
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKAR 227

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF+ M+E+DVVCWNVMI GYAQ G+ NE+L LFRRML  K  PNEVT +AVLSACGQ+G
Sbjct: 228 SLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLG 287

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALESGRWIHSYIEN + I++NV VGTALI+MYSKCGSL+DARLVFDR+ DKDVV WNSMI
Sbjct: 288 ALESGRWIHSYIEN-KGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMI 346

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGYAMHGF + ALQLF EM     KP+DITFIG+LSAC H GLV EGR FF  M+D+Y I
Sbjct: 347 VGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGI 406

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EPK+EHYGCMVNLL RAG +EEAY LV +M I  D VLWGTLLG CRLH NI LGE+IA+
Sbjct: 407 EPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAK 466

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L+ Q LANSGTYVLLSN+YAA GNW+GVA++RTLMKE G++KE GCSSIE+ NKVHEF+
Sbjct: 467 FLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFV 526

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AG+ +HPKSKEIY+ML EIN WLKA GY PQT +VLHD+ E+QK+ SLEVHSEKLA+AFG
Sbjct: 527 AGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFG 586

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIST+PGT++KIVKNLRVC DCH V K+IS+ TGRKI+MRDRNRFHHF +G CSCGDYW
Sbjct: 587 LISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/445 (77%), Positives = 398/445 (89%), Gaps = 1/445 (0%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
           MP++SLVSLT M+TCYAK G +  ARVLFD +EE+D +CWNVMIDGYAQHGL NE L+LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           R+ML  KV PNEVT +AVLSACGQ GALE+GRW+HSYIEN+  I +NV+VGT+LI+MYSK
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENN-GIGINVRVGTSLIDMYSK 119

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CGSL+DARLVF+R+++KDVV WNSM+VGYAMHGF +DAL+LF EMC I  +P+DITFIG+
Sbjct: 120 CGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGV 179

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L+AC+HAGLV+EG +FF +MKDEY IEPKVEHYGCMVNLL RAG +EEAY+LV +M+I+ 
Sbjct: 180 LNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQ 239

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D VLWGTLLGACRLHGNIALGE+IAEYL+SQNLANSGTYVLLSNIYAA GNW+GVARVRT
Sbjct: 240 DPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRT 299

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMKE G +KEPGCSSIE++NKVHEFLAGDLRHPKS+EIY MLEEINGWLK  GY PQT I
Sbjct: 300 LMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDI 359

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHD+ + QK+ SL VHSEKLA+AFGLI+T+PGT+IKIVKNLRVC DCHAV KLISK TG
Sbjct: 360 VLHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITG 419

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           RK++MRDRNRFHHFVNG CSCGDYW
Sbjct: 420 RKVVMRDRNRFHHFVNGLCSCGDYW 444



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 32/181 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ V TSL+D+Y++ G +  A  +F  +  + +V+  +M+                    
Sbjct: 106 NVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVV------------------- 146

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                       GYA HG + +AL LF+ M     +P ++T + VL+AC   G +  G  
Sbjct: 147 ------------GYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWK 194

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
               +++   I+  V+    ++N+  + G L++A  LV +   D+D V+W +++    +H
Sbjct: 195 FFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLH 254

Query: 188 G 188
           G
Sbjct: 255 G 255


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/487 (68%), Positives = 402/487 (82%), Gaps = 8/487 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +KF L   LYVST LVD YARGGDV SA+KLF  MP+RSLVS T MLTCYAK G +  A
Sbjct: 143 AIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEA 202

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-------KVEPNEVTAVAV 113
           RVLF+ M  KDVVCWNVMIDGYAQHG  NEALV FR+M+         KV PNE+T VAV
Sbjct: 203 RVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAV 262

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           LS+CGQ+GALE G+W+HSY+EN+  IKVNV+VGTAL++MY KCGSL+DAR VFD +  KD
Sbjct: 263 LSSCGQVGALECGKWVHSYVENN-GIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKD 321

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           VV WNSMI+GY +HGF  +ALQLF+EMC I +KPSDITF+ +L+ACAHAGLV++G   F+
Sbjct: 322 VVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFD 381

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           +MKD Y +EPKVEHYGCMVNLL RAG+++EAY LV  M++EPD VLWGTLL ACR+H N+
Sbjct: 382 SMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNV 441

Query: 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353
           +LGE+IAE L+S  LA+SGTYVLLSN+YAA  NW GVA+VR++MK  GV+KEPGCSSIE+
Sbjct: 442 SLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEV 501

Query: 354 SNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHS 413
            N+VHEF+AGD RHP+SK+IY MLE++NGWLK   Y P+T  VLHDIGE++K+ SLEVHS
Sbjct: 502 KNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHS 561

Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           EKLA+AFGLIST PG +IKIVKNLRVC DCHAV K++SK +GRKI+MRDRNRFHHF NG+
Sbjct: 562 EKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGS 621

Query: 474 CSCGDYW 480
           CSC DYW
Sbjct: 622 CSCRDYW 628



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 43/278 (15%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA  G +  +  LF      +V  W  +I+ +A   L + AL  + +ML   ++PN  T 
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 111 VAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVG----------------------- 146
            ++L AC     L   R +HS+ I+   +  + V  G                       
Sbjct: 125 SSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180

Query: 147 ------TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE- 199
                 TA++  Y+K G L +AR++F+ +  KDVV WN MI GYA HG   +AL  F + 
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240

Query: 200 ------MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
                     +++P++IT + +LS+C   G +  G ++ ++  +   I+  V     +V+
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVD 299

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  + G +E+A K V D+    D V W +++    +HG
Sbjct: 300 MYCKCGSLEDARK-VFDVMEGKDVVAWNSMIMGYGIHG 336


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/481 (64%), Positives = 395/481 (82%), Gaps = 3/481 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF L  D YV+T LVD+YA+GGDV+SA+K+F  MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            LFD M E+D+V WNVMIDGYAQHG  N+AL+LF+++LAE K +P+E+T VA LSAC QI
Sbjct: 213 ALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQI 272

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE+GRWIH ++++SR I++NV+V T LI+MYSKCGSL++A LVF+    KD+V WN+M
Sbjct: 273 GALETGRWIHVFVKSSR-IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 331

Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I GYAMHG+ +DAL+LFNEM  I  L+P+DITFIG L ACAHAGLVNEG R F +M  EY
Sbjct: 332 IAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEY 391

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGC+V+LL RAGQ++ AY+ + +M ++ DSVLW ++LG+C+LHG+  LG++I
Sbjct: 392 GIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEI 451

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           AEYLI  N+ NSG YVLLSNIYA++G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 452 AEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHE 511

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F AGD  H KSKEIY ML +I+  +K+ GYVP T  VL D+ E +K+ SL+VHSE+LA+A
Sbjct: 512 FRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIA 571

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSCGD+
Sbjct: 572 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDF 631

Query: 480 W 480
           W
Sbjct: 632 W 632



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 135/272 (49%), Gaps = 37/272 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA  G++  +  LF    + D+  +   I+  + +GL ++A +L+ ++L+ ++ PNE T 
Sbjct: 74  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133

Query: 111 VAVLSACGQIGALESGRWIHSYIEN------------------------------SRNIK 140
            ++L +C    + +SG+ IH+++                                 R  +
Sbjct: 134 SSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE- 199
            ++   TA+I  Y+K G+++ AR +FD + ++D+V WN MI GYA HGF  DAL LF + 
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           +   + KP +IT +  LSAC+  G +  G R+ +       I   V+    ++++ S+ G
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +EEA  LV +     D V W  ++    +HG
Sbjct: 309 SLEEAV-LVFNDTPRKDIVAWNAMIAGYAMHG 339


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/481 (63%), Positives = 396/481 (82%), Gaps = 3/481 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF L  D YV+T LVD+YA+GGDV+SA+K+F  MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 151 LKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 210

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            LFD M E+D+V WNVMIDGY+QHG  ++AL+LF+++LA+ K +P+E+T VA LSAC QI
Sbjct: 211 ALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQI 270

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE+GRWIH ++ +SR I++NV+V TALI+MYSKCGSL++A LVF+    KD+V WN+M
Sbjct: 271 GALETGRWIHVFVNSSR-IRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 329

Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I GYAMHG+ +DAL+LF+EM  I  L+P+DITFIG L ACAHAGLVNEG + F +M  EY
Sbjct: 330 ITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEY 389

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGC+V+LL RAGQ++ AY+++ +M +E DSVLW ++LG+C+LHG   LG++I
Sbjct: 390 GIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEI 449

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           AEYLI QN++NSG YVLLSNIYA +G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 450 AEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHE 509

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F AGD  H KSKEIY ML +++  +K+ GYVP T  VLHD+ E +K+ SL+VHSE+LA+A
Sbjct: 510 FRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIA 569

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSC D+
Sbjct: 570 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDF 629

Query: 480 W 480
           W
Sbjct: 630 W 630



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 137/272 (50%), Gaps = 37/272 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA  G++  +  LF    + D+  +   I+  + +GL ++A +L+ ++L+ ++ PNE T 
Sbjct: 72  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131

Query: 111 VAVLSACGQIGALESGRWIHSYIEN------------------------------SRNIK 140
            ++L +C    + +SG+ IH+++                                 R  +
Sbjct: 132 SSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPE 187

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE- 199
            ++   TA+I  Y+K G+++ AR +FDR+ ++D+V WN MI GY+ HGF  DAL LF + 
Sbjct: 188 RSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKL 247

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           +   + KP +IT +  LSAC+  G +  G R+ +   +   I   V+    ++++ S+ G
Sbjct: 248 LADGKPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKCG 306

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +EEA  LV +     D V W  ++    +HG
Sbjct: 307 SLEEAV-LVFNDTPRKDIVAWNAMITGYAMHG 337



 Score = 39.3 bits (90), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 35/193 (18%), Positives = 76/193 (39%), Gaps = 41/193 (21%)

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H+ + + R   +N+++  A    Y+  G ++ +  +F +  D D+ ++ + I   +++G 
Sbjct: 53  HNLLIHPRYPVLNLKLHRA----YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGL 108

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSAC------------------------------ 219
              A  L+ ++   ++ P++ TF  +L +C                              
Sbjct: 109 KDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHVLKFGLGLDPYVATGLVDI 168

Query: 220 -AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            A  G V   ++ F+ M +   +         M+   ++ G VE A + + D   E D V
Sbjct: 169 YAKGGDVVSAQKVFDRMPERSLVSST-----AMITCYAKQGNVEAA-RALFDRMCERDIV 222

Query: 279 LWGTLLGACRLHG 291
            W  ++     HG
Sbjct: 223 SWNVMIDGYSQHG 235


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/478 (62%), Positives = 382/478 (79%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +L  D YV+T+L+ +YARGGD  +A  LF  MP   +V +T MLTCYAK G +  AR 
Sbjct: 158 KLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARE 217

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M  KD +CWN MIDGY QHG  NEAL LFR ML   V+P+EV  +  LSA  Q+G 
Sbjct: 218 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 277

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            ESGRW+HSY++NSR +++N +VGTALI+MY KCGSL+DA  VF+ + DKD+VVWN+MI 
Sbjct: 278 AESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMIN 337

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GYAMHG  + AL++F+++    L P+DITFIGLL+AC+H+GLV+EG +FF +M++EYAI 
Sbjct: 338 GYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 397

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           PK+EHYGCMV+LL RAG +EEA+ LV  M I PD+V+W +LL ACRLH N+ALG++IA+Y
Sbjct: 398 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADY 457

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L++  LANSG Y+LLSNIYAA+GNW+ VARVR++MK  G+QKEPGCS+IE+  KV+EF+A
Sbjct: 458 LVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 517

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD+ HP++ EIY MLE++NG +K +G+VPQT++VLHD+ E  K+ +L VHSEKLAVAFGL
Sbjct: 518 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 577

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IST PG +IKIVKNLR C DCHAV KLISK TGRKI+ RDRNRFHHFV+G+C+CGDYW
Sbjct: 578 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/478 (62%), Positives = 382/478 (79%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +L  D YV+T+L+ +YARGGD  +A  LF  MP   +V +T MLTCYAK G +  AR 
Sbjct: 157 KLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARE 216

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M  KD +CWN MIDGY QHG  NEAL LFR ML   V+P+EV  +  LSA  Q+G 
Sbjct: 217 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 276

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            ESGRW+HSY++NSR +++N +VGTALI+MY KCGSL+DA  VF+ + DKD+VVWN+MI 
Sbjct: 277 AESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMIN 336

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GYAMHG  + AL++F+++    L P+DITFIGLL+AC+H+GLV+EG +FF +M++EYAI 
Sbjct: 337 GYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 396

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           PK+EHYGCMV+LL RAG +EEA+ LV  M I PD+V+W +LL ACRLH N+ALG++IA+Y
Sbjct: 397 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADY 456

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L++  LANSG Y+LLSNIYAA+GNW+ VARVR++MK  G+QKEPGCS+IE+  KV+EF+A
Sbjct: 457 LVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 516

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD+ HP++ EIY MLE++NG +K +G+VPQT++VLHD+ E  K+ +L VHSEKLAVAFGL
Sbjct: 517 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 576

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IST PG +IKIVKNLR C DCHAV KLISK TGRKI+ RDRNRFHHFV+G+C+CGDYW
Sbjct: 577 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/479 (62%), Positives = 382/479 (79%), Gaps = 1/479 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAAR 61
           K +L  D YV+T+L+ +YAR GD  +A  LF  M P   +VS+T MLTCYA  G +  AR
Sbjct: 414 KLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDAR 473

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD +  KD VCWN MIDGY QHG  NEAL LFRRML   VEP+EVT V VLSA  Q+G
Sbjct: 474 SLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLG 533

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +ESG+W+HSY++NSR ++++V+VGTALI+MY KCGSL DA  VF  + DKD+VVWN+MI
Sbjct: 534 TVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMI 593

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYAMHG  + AL++F +     L P+DITFIGLL+AC+H+G+V EGR FF +M+ EY I
Sbjct: 594 NGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGI 653

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +PK+EHYGCMV+LL RAG ++EA+ LV  MKI PD+V+W +LL ACRLH N++LG++IA+
Sbjct: 654 DPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIAD 713

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           YL+++ LANSG Y+LLSNIYAA+GNW  VARVR++MK  G+QKEPGCSSIE+  +V+EF+
Sbjct: 714 YLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFV 773

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD+ HP++ EIY+ML+++NG +K  G+VPQT++VLHD+ E  K+ +L VHSEKLA+AFG
Sbjct: 774 AGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFG 833

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LISTQPG +IKIVKNLR C DCHAV KLIS+ TGRKI+ RDRNRFHHFV+G+CSCGDYW
Sbjct: 834 LISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 37/274 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA  G +  +  L     +   + +   I  ++  G    AL L   MLA+ + P   T 
Sbjct: 333 YAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTL 392

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-------------- 156
            A L AC     L  GR +H Y      +  +  V TAL+ MY++               
Sbjct: 393 SASLPAC---RGLSPGRALHGY-AFKLALAGDSYVATALLGMYARAGDATAARALFDDML 448

Query: 157 ------------------GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
                             G+L DAR +FD +  KD V WN+MI GY  HG   +AL+LF 
Sbjct: 449 PDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFR 508

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
            M    ++P ++T + +LSA A  G V  G+   + +K+   ++  V     ++++  + 
Sbjct: 509 RMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKC 568

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           G + +A  +   +  + D V+W  ++    +HG+
Sbjct: 569 GSLGDAVDVFHGIG-DKDIVVWNAMINGYAMHGD 601


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 291/478 (60%), Positives = 377/478 (78%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +L  D YV+T+L+ +YAR GD  +A  LF  MP   +VS+T MLTCYA  G +  AR 
Sbjct: 147 KLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARR 206

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD +  KD +CWN MIDGY QHG  NEAL LFRRML    EP+EVT V VLSA  Q+G 
Sbjct: 207 LFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGT 266

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           +ESG+W+HSY++NSR +++NV+V TAL++MY KCGSL+DA  VF  + +KD+VVWN+MI 
Sbjct: 267 VESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMIN 326

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GYAMHG  + AL++F ++    L P+DITFIGLL+AC+H+GLV EGR FF +M+ EY I+
Sbjct: 327 GYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGID 386

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           PK+EHYGCMV+LL RAG +EEA+ LV  + I PD+V+W +LL ACRLH N+ALG++IA++
Sbjct: 387 PKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADF 446

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L++  LANSG Y+LLSNIYAA+G W+ VARVR++MK  G+QKEPGCS+IE+  KV+EF+A
Sbjct: 447 LVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVA 506

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD+ HP + EIY ML+++N  +K  G+VPQT++VLHD+ E  K+ +L VHSEKLAVAFGL
Sbjct: 507 GDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGL 566

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IS++PG++IKIVKNLR C DCHAV KLISK T RKI+ RDRNRFHHFV+G+C+CGDYW
Sbjct: 567 ISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/487 (58%), Positives = 369/487 (75%), Gaps = 7/487 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAA 59
            VK +L  + YV+T+L+ +YAR G+  +A  LF  M P   +VS+T ML+CYAK G++  
Sbjct: 147 AVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDD 206

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LFD +  KD+VCWN M+DGY QHG  +EAL LFR+ML   VEP+EV+ V  LSA  Q
Sbjct: 207 ARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQ 266

Query: 120 IGALESGRWIHSYIENS---RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN---DKD 173
           +G  ESGRW+HS++ N      +++N +VGTAL++MY KCGSL++A  VF  +    D+D
Sbjct: 267 LGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRD 326

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           VV WN+MI GYAMHG  ++AL+ F ++    L P+DITFIG+L+AC+H+GLV+EGR  F 
Sbjct: 327 VVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFA 386

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            M++EY I PKVEHYGCMV+LL RAG+VEEA+ LV  MK +PD+ +W +LLGACRLH N+
Sbjct: 387 AMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNL 446

Query: 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353
           ALG+++A+YL+   LANSGTYVLLSN+YAA G W  V RVR++M+  GVQKEPGCS++E+
Sbjct: 447 ALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEV 506

Query: 354 SNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHS 413
             +V EF+AGD  HP+S EIY  LEE+N   +A G+VP T++VLHD+ +  K+ +L VHS
Sbjct: 507 GRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHS 566

Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           EKLA+AFGLIST P T IKIVKNLR C DCHAV KL+S+ TGRKI+ RDRNRFHHFV+G+
Sbjct: 567 EKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGS 626

Query: 474 CSCGDYW 480
           CSCGDYW
Sbjct: 627 CSCGDYW 633


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 284/489 (58%), Positives = 370/489 (75%), Gaps = 9/489 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAA 59
            VK +L  + YV+T+L+ +YAR GD  +A  LF  M P   +VS+T MLTCYAK G +  
Sbjct: 152 AVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDD 211

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LFD +  KD++CWN M+DGY QHG  +EAL LFRRML   VEP+EV+ V  LSA  Q
Sbjct: 212 ARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQ 271

Query: 120 IGALESGRWIHSYIENS--RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVV 175
           +G  ESGRW+HS++ NS  R +++N +VGTALI+MY KCGSL+DA  VF  +   D+D+V
Sbjct: 272 LGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIV 331

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            WN+M+ GYAMHG  ++AL  F ++    L P+DITFIG+L+AC+H+GLV+EGR  F +M
Sbjct: 332 AWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSM 391

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIA 294
            +EY IEPKVEHYGCMV+LL RAG+VEEA++LV  M + +PD+V+W +LL ACRLH N+ 
Sbjct: 392 AEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNME 451

Query: 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           LG++IA++L++  LANSGTYVLLSN+YAA GNW  V RVR +M+  G+QKEPGCS++E+ 
Sbjct: 452 LGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVG 511

Query: 355 NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQ---IVLHDIGEKQKQNSLEV 411
            +V EF+AGD  HP++ EIY  LEE+NG  +A G+VP+T+     L D     K+ +L V
Sbjct: 512 RRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAV 571

Query: 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVN 471
           HSEKLA+AFGLIST PGT+IKIVKNLR C DCHAV KL+S+ TGRKI+ RDRNRFHHFV+
Sbjct: 572 HSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVD 631

Query: 472 GTCSCGDYW 480
           G+C+CGDYW
Sbjct: 632 GSCTCGDYW 640


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/480 (50%), Positives = 350/480 (72%), Gaps = 2/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L  +  V   +++LY + G++  A ++F  MP+  +V+ T M++ Y+ QG V  A
Sbjct: 173 ALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEA 231

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +F  +  KD VCW  MIDG+ ++   N AL  FR M  E V PNE T V VLSAC Q+
Sbjct: 232 GAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 291

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE GRW+HSY+     I++N+ VG ALINMYS+CGS+ +A+ VFD + D+DV+ +N+M
Sbjct: 292 GALEIGRWVHSYMRKF-EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G +M+G  + A++LF  M   RL+P+++TF+G+L+AC+H GLV+ G + F++M  +Y 
Sbjct: 351 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 410

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP++EHYGCMV+LL R G++EEAY L+  MK+ PD ++ GTLL AC++H N+ LGE++A
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L  +  A+SGTYVLLS++YA+ G W   A+VR  MKE G+QKEPGCSSIE++N++HEF
Sbjct: 471 KVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEF 530

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           L GDLRHP+ + IY  LEE+N  L+ EGY P+ ++VL DI + +K+ +L +HSE+LA+ +
Sbjct: 531 LLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICY 590

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLIST+P T I+++KNLRVC DCH+  KLI+K T RK+++RDRNRFH+F NG CSCGDYW
Sbjct: 591 GLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 153/335 (45%), Gaps = 43/335 (12%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L   +K   +  A  +F      +V  +  +IDG+   G   +A+ L+ RML + + P+
Sbjct: 87  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPD 146

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDA 162
                ++L ACG   AL  GR +H     SR +K+    N  V   ++ +Y KCG L DA
Sbjct: 147 NYLMASILKACGSQLALREGREVH-----SRALKLGLSSNRLVRLRIMELYGKCGELGDA 201

Query: 163 RLVFD------------------------------RVNDKDVVVWNSMIVGYAMHGFGKD 192
           R VF+                              RV  KD V W +MI G+  +     
Sbjct: 202 RRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNR 261

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           AL+ F  M    ++P++ T + +LSAC+  G +  GR   + M+ ++ IE  +     ++
Sbjct: 262 ALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR-KFEIELNLFVGNALI 320

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           N+ SR G ++EA  +  +MK + D + + T++    ++G      ++   +I + L  + 
Sbjct: 321 NMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTN 379

Query: 313 -TYVLLSNIYAAIGNWD-GVARVRTLMKEKGVQKE 345
            T+V + N  +  G  D G     ++ ++ GV+ +
Sbjct: 380 VTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQ 414


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 239/479 (49%), Positives = 340/479 (70%), Gaps = 14/479 (2%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  +  +   L++LY + G    A ++F  MP+R +V+ T M+  Y   G      
Sbjct: 157 LKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI----- 211

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                   KD VCW  MIDG  ++G +N AL +FR M  E V PNEVT V VLSAC ++G
Sbjct: 212 --------KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELG 263

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ GRW+ SY++  R I++N  VG ALINMYS+CG + +A+ VF+++ +K+V+ +NSMI
Sbjct: 264 ALQLGRWVRSYMDKHR-IELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMI 322

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G+A+HG   +A++LF  + +    PS +TF+G+L+AC+H GL   G   F++M  +Y I
Sbjct: 323 MGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGI 382

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+LL R G++EEAY  +  MK+ PD V+ G LL AC++HGN+ L E++A+
Sbjct: 383 EPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAK 442

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L++   A+SGTY+LLSN Y++ G W   A VRT M+E+G++KEPGCSSIE++N++HEFL
Sbjct: 443 SLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFL 502

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GDLRHP+ ++IY  LEE+N  L+ EGY P T++VLHDI + +K+ +L +HSE+LA+ +G
Sbjct: 503 LGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYG 562

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIST+P T++++VKNLRVC DCH   KLIS  T RKI++RDRNRFHHF NG CSCGDYW
Sbjct: 563 LISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 156/330 (47%), Gaps = 28/330 (8%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q   V    +  C +    +  A  +F   +  +V  +  +IDG        + + L+ +
Sbjct: 62  QDPFVVFELLRVC-SNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQ 120

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   + P+     +VL ACG   AL+ GR +HS +     +  N  +   LI +Y KCG
Sbjct: 121 MINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVL-KLGLSSNRSIRIKLIELYGKCG 179

Query: 158 SLKDARLVFDRVNDKDVVV------------------WNSMIVGYAMHGFGKDALQLFNE 199
           + +DAR VFD + ++DVV                   W +MI G   +G    AL++F  
Sbjct: 180 AFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRN 239

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY--GCMVNLLSR 257
           M R  + P+++T + +LSAC+  G +  G R+  +  D++ IE  + H+  G ++N+ SR
Sbjct: 240 MQREDVMPNEVTIVCVLSACSELGALQLG-RWVRSYMDKHRIE--LNHFVGGALINMYSR 296

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG-TYVL 316
            G ++EA ++   MK E + + + +++    LHG      ++   LI Q    S  T+V 
Sbjct: 297 CGDIDEAQRVFEQMK-EKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVG 355

Query: 317 LSNIYAAIGNWD-GVARVRTLMKEKGVQKE 345
           + N  +  G  + G     ++ K+ G++ +
Sbjct: 356 VLNACSHGGLAELGFEIFHSMAKDYGIEPQ 385


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/480 (50%), Positives = 348/480 (72%), Gaps = 2/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K     +  V   +++LY + G++  A ++F  MP+  +V+ T M++ Y+ QG V  A
Sbjct: 173 ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEA 231

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +F  +  KD VCW  MIDG+ ++   N AL  FR M  E V PNE T V VLSAC Q+
Sbjct: 232 GAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 291

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE GRW+HSY+     I++N+ VG ALINMYS+CGS+ +A+ VFD + D+DV+ +N+M
Sbjct: 292 GALEIGRWVHSYMRKF-EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 350

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G +M+G  + A++LF  M   RL+P+++TF+G+L+AC+H GLV+ G   F++M  +Y 
Sbjct: 351 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 410

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP++EHYGCMV+LL R G++EEAY L+  MK+ PD ++ GTLL AC++H N+ LGE++A
Sbjct: 411 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 470

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L  +  A+SGTYVLLS++YA+ G W   A+VR  MKE G+QKEPGCSSIE++N++HEF
Sbjct: 471 KELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEF 530

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           L GDLRHP+ + IY  LEE+N  L+ EGY P+ ++VL DI + +K+ +L +HSE+LA+ +
Sbjct: 531 LLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICY 590

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLIST+P T I+++KNLRVC DCH+  KLI+K T RKI++RDRNRFH+F NG CSCGDYW
Sbjct: 591 GLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 41/279 (14%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L   +K   +  A  +F      +V  +  +IDG+   G   EA+ L+ RML E + P+
Sbjct: 87  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPD 146

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDA 162
                ++L ACG   AL  GR +H     SR +K+    N  V   ++ +Y KCG L DA
Sbjct: 147 NYLMASILKACGSQLALREGREVH-----SRALKLGFSSNRLVRLRIMELYGKCGELGDA 201

Query: 163 RLVFD------------------------------RVNDKDVVVWNSMIVGYAMHGFGKD 192
           R VF+                              RV  KD V W +MI G+  +     
Sbjct: 202 RRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNR 261

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           AL+ F  M    ++P++ T + +LSAC+  G +  GR   + M+ ++ IE  +     ++
Sbjct: 262 ALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR-KFEIELNLFVGNALI 320

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           N+ SR G ++EA  +  +MK + D + + T++    ++G
Sbjct: 321 NMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNG 358


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/480 (49%), Positives = 338/480 (70%), Gaps = 1/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L  D  ++  LV+LY + G +  A K+F  MP+R +V+ T M+      G V  A
Sbjct: 151 VLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEA 210

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +F++M  +D VCW ++IDG  ++G  N  L +FR M  + VEPNEVT V VLSAC Q+
Sbjct: 211 IEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQL 270

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE GRWIH+Y+     ++VN  V  ALINMYS+CG + +A+ +FD V  KDV  +NSM
Sbjct: 271 GALELGRWIHAYMRKC-GVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSM 329

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A+HG   +A++LF+EM + R++P+ ITF+G+L+AC+H GLV+ G   F +M+  + 
Sbjct: 330 IGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHG 389

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP+VEHYGCMV++L R G++EEA+  +  M +E D  +  +LL AC++H NI +GEK+A
Sbjct: 390 IEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVA 449

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L      +SG++++LSN YA++G W   A VR  M++ G+ KEPGCSSIE++N +HEF
Sbjct: 450 KLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEF 509

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
            +GDLRHP+ K IY  LEE+N   K EGY+P T++ LHDI ++QK+ +L VHSE+LA+ +
Sbjct: 510 FSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICY 569

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+ST+  T++++ KNLR+C DCHA+ KLI+K T RKI++RDRNRFHHF NG CSC DYW
Sbjct: 570 GLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 35/305 (11%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y K   +  A  LF   +  +V  +  +IDG+   G   +A+ LF +M+ + V  +
Sbjct: 65  LLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLAD 124

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                A+L AC    AL SG+ +H  +  S  + ++  +   L+ +Y KCG L+DAR +F
Sbjct: 125 NYAVTAMLKACVLQRALGSGKEVHGLVLKS-GLGLDRSIALKLVELYGKCGVLEDARKMF 183

Query: 167 DRVNDKDVVV-------------------------------WNSMIVGYAMHGFGKDALQ 195
           D + ++DVV                                W  +I G   +G     L+
Sbjct: 184 DGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLE 243

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           +F EM    ++P+++TF+ +LSACA  G +  GR     M+ +  +E      G ++N+ 
Sbjct: 244 VFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMR-KCGVEVNRFVAGALINMY 302

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG-NIALGEKIAEYLISQNLANSGTY 314
           SR G ++EA  L   ++++ D   + +++G   LHG +I   E  +E L  +   N  T+
Sbjct: 303 SRCGDIDEAQALFDGVRVK-DVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITF 361

Query: 315 VLLSN 319
           V + N
Sbjct: 362 VGVLN 366



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V   L+ +Y K   +  A  +F    + +V ++ S+I G+   G   DA+ LF +M R  
Sbjct: 61  VAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKH 120

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           +   +     +L AC     +  G+      +K    ++  +     +V L  + G +E+
Sbjct: 121 VLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALK--LVELYGKCGVLED 178

Query: 264 AYKLVMDMKIEPDSVLWGTLLGAC 287
           A K+   M  E D V    ++G+C
Sbjct: 179 ARKMFDGMP-ERDVVACTVMIGSC 201


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/511 (48%), Positives = 341/511 (66%), Gaps = 32/511 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGD--------------------VLSAE---------- 30
            +K  L  DL+V T+L+++YA+ GD                    VL AE          
Sbjct: 131 VLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLA 190

Query: 31  -KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
             LF  MP+R LVS  TM+  +A  G+V  A+ LFD   E+D++ W+ MI  YA+   +N
Sbjct: 191 HDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSN 250

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           EAL LF  M    V P++VT V+VLSACG +GAL  G+ IH  IE +R I++++++GT+L
Sbjct: 251 EALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNR-IEIDLKLGTSL 309

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           ++MY+KCG + ++  VF+ +N++DV  W++MI+G A HGFG+ AL  F++M    +KP+D
Sbjct: 310 VDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPND 369

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           +TFIG+LSAC+H GLV+EG  +F +M   Y + PK+EHYGC+V++L RAG+++EA +L+ 
Sbjct: 370 VTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIK 429

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
            M   PD+++W  LLGACR++ N+ + E+    L+       G YVLLSNIY+    WD 
Sbjct: 430 SMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDK 489

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389
           V  VR +MK   +QK PG SSIE+ N VHEF+AGD  HP+SK+I  ML EI   LKA GY
Sbjct: 490 VVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGY 549

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKL 449
            P T  VL D  EK+K+N+L  HSEKLA+AFGL+ST PG++I+IVKNLRVC DCH   KL
Sbjct: 550 APLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKL 609

Query: 450 ISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IS+   R+I++RDRNRFHHFVNG+CSC DYW
Sbjct: 610 ISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 143/312 (45%), Gaps = 25/312 (8%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  L   L   +   ++  AR +FD++   D   WN MI  Y       E++ LF +M  
Sbjct: 38  LAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRH 97

Query: 101 EKVEPNEVTAVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           ++  P +  +++ V+ ACG++    +G+ +H+ +     +  ++ V TALI MY+K G +
Sbjct: 98  QECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKI-GLGSDLFVETALIEMYAKFGDI 156

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + AR + D +   D+V +N ++  Y   G    A  LF+ M    L    +++  ++   
Sbjct: 157 EIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDL----VSWNTMIHGH 212

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PD 276
           A  G V   ++ F+        E  +  +  M+   ++A Q  EA +L  +M++    PD
Sbjct: 213 ASLGDVGTAKKLFDR-----TCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPD 267

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYL------ISQNLANSGTYVLLSNIYAAIGNWDGV 330
            V   ++L AC   G + +G+ I E +      I   L  S     L ++YA  G+ D  
Sbjct: 268 KVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTS-----LVDMYAKCGDIDNS 322

Query: 331 ARVRTLMKEKGV 342
            RV   M  + V
Sbjct: 323 LRVFNGMNNRDV 334


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/485 (50%), Positives = 345/485 (71%), Gaps = 11/485 (2%)

Query: 5   SLDKDLYVSTSLV-----DLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
           S+  D Y+  S++      L  R G  + +  L   +    LV L  M   Y K GE+  
Sbjct: 125 SILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIM-ELYGKCGELGD 183

Query: 60  ARVLFDDMEE----KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
           AR +F++M E    KD VCW  MIDG+ ++   N AL  FR M  E V PNE T V VLS
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           AC Q+GALE GRW+HSY+     I++N+ VG ALINMYS+CGS+ +A+ VFD + D+DV+
Sbjct: 244 ACSQLGALEIGRWVHSYMRKF-EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 302

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            +N+MI G +M+G  + A++LF  M   RL+P+++TF+G+L+AC+H GLV+ G + F++M
Sbjct: 303 TYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSM 362

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIAL 295
             +Y +EP++EHYGCMV+LL R G++EEAY L+  MK+ PD ++ GTLL AC++H N+ L
Sbjct: 363 TRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLEL 422

Query: 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN 355
           GE++A+ L  +  A+SGTYVLLS++YA+ G W   A+VR  MKE G+QKEPGCSSIE++N
Sbjct: 423 GEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 482

Query: 356 KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEK 415
           ++HEFL GDLRHP+ + IY  LEE+N  L+ EGY P+ ++VL DI + +K+ +L +HSE+
Sbjct: 483 EIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSER 542

Query: 416 LAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCS 475
           LA+ +GLIST+P T I+++KNLRVC DCH+  KLI+K T RK+++RDRNRFH+F NG CS
Sbjct: 543 LAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACS 602

Query: 476 CGDYW 480
           CGDYW
Sbjct: 603 CGDYW 607



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 153/309 (49%), Gaps = 17/309 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L   +K   +  A  +F      +V  +  +IDG+   G   +A+ L+ RML + + P+
Sbjct: 70  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPD 129

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDA 162
                ++L ACG   AL  GR +H     SR +K+    N  V   ++ +Y KCG L DA
Sbjct: 130 NYLMASILKACGSQLALREGREVH-----SRALKLGLSSNRLVRLRIMELYGKCGELGDA 184

Query: 163 RLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           R VF+ + +    KD V W +MI G+  +     AL+ F  M    ++P++ T + +LSA
Sbjct: 185 RRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSA 244

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+  G +  GR   + M+ ++ IE  +     ++N+ SR G ++EA  +  +MK + D +
Sbjct: 245 CSQLGALEIGRWVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVI 302

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSG-TYVLLSNIYAAIGNWD-GVARVRTL 336
            + T++    ++G      ++   +I + L  +  T+V + N  +  G  D G     ++
Sbjct: 303 TYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSM 362

Query: 337 MKEKGVQKE 345
            ++ GV+ +
Sbjct: 363 TRDYGVEPQ 371



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 85/186 (45%), Gaps = 32/186 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF ++ +L+V  +L+++Y+R G +  A+ +F  M  R +++                   
Sbjct: 263 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT------------------- 303

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                       +N MI G + +G + +A+ LFR M+  ++ P  VT V VL+AC   G 
Sbjct: 304 ------------YNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGL 351

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           ++ G  I   +     ++  ++    ++++  + G L++A  L+       D ++  +++
Sbjct: 352 VDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLL 411

Query: 182 VGYAMH 187
               MH
Sbjct: 412 SACKMH 417


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/521 (47%), Positives = 353/521 (67%), Gaps = 44/521 (8%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTC------------ 50
           +++ + ++Y+ T+L+D +   G+ L A +L++ M   S++    ++              
Sbjct: 95  QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 154

Query: 51  ---------------------------YAKQGEVAAARVLFDDMEE----KDVVCWNVMI 79
                                      Y K GE+  AR +F++M E    KD VCW  MI
Sbjct: 155 EGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMI 214

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
           DG+ ++   N AL  FR M  E V PNE T V VLSAC Q+GALE GRW+HSY+     I
Sbjct: 215 DGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF-EI 273

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           ++N+ VG ALINMYS+CGS+ +A+ VFD + D+DV+ +N+MI G +M+G  + A++LF  
Sbjct: 274 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 333

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M   RL+P+++TF+G+L+AC+H GLV+ G   F++M  +Y +EP++EHYGCMV+LL R G
Sbjct: 334 MVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVG 393

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
           ++EEAY L+  MK+ PD ++ GTLL AC++H N+ LGE++A+ L  +  A+SGTYVLLS+
Sbjct: 394 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSH 453

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           +YA+ G W   A+VR  MKE G+QKEPGCSSIE++N++HEFL GDLRHP+ + IY  LEE
Sbjct: 454 VYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEE 513

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           +N  L+ EGY P+ ++VL DI + +K+ +L +HSE+LA+ +GLIST+P T I+++KNLRV
Sbjct: 514 LNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRV 573

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH+  KLI+K T RKI++RDRNRFH+F NG CSCGDYW
Sbjct: 574 CYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 15/253 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L   +K   +  A  +F      +V  +  +IDG+   G   EA+ L+ RML E + P+
Sbjct: 77  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPD 136

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDA 162
                ++L ACG   AL  GR +H     SR +K+    N  V   ++ +Y KCG L DA
Sbjct: 137 NYLMASILKACGSQLALREGREVH-----SRALKLGFSSNRLVRLRIMELYGKCGELGDA 191

Query: 163 RLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           R VF+ + +    KD V W +MI G+  +     AL+ F  M    ++P++ T + +LSA
Sbjct: 192 RRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSA 251

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+  G +  GR   + M+ ++ IE  +     ++N+ SR G ++EA  +  +MK + D +
Sbjct: 252 CSQLGALEIGRWVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVI 309

Query: 279 LWGTLLGACRLHG 291
            + T++    ++G
Sbjct: 310 TYNTMISGLSMNG 322


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/495 (50%), Positives = 344/495 (69%), Gaps = 16/495 (3%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF---------------ATMPQRSLVSLT 45
            VKF LD D +V +++V +Y   G +  A +LF                      +V   
Sbjct: 138 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 197

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            M+  Y + GE+  AR LFD+M ++ VV WNVMI GYAQ G   EA+ +FR M   +V P
Sbjct: 198 VMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPP 257

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT V+VL A  ++GALE G+W+H Y   + NI V+  +G+ALI+MY+KCGS++ A  V
Sbjct: 258 NYVTLVSVLPAMSRLGALELGKWVHLYAVRN-NIGVDDVLGSALIDMYAKCGSIEKALQV 316

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  ++VV W+++I G AMHG  KD L  F +M R  + PSD+T+IGLLSAC+HAGLV
Sbjct: 317 FEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLV 376

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEGR FF+ M     +EP++EHYGCMV+LL RAG +EE+ +L+++M I+PD V+W  LLG
Sbjct: 377 NEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLG 436

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC++HGN+ +G+++AE+L+     +SG+YV LSNIYA++GNW+GVA+VR +MKE  V+K+
Sbjct: 437 ACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKD 496

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCS IEL   +HEFL  D  HPKSK+I+ ML+E++  L   GY P T  VL ++ E+ K
Sbjct: 497 PGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDK 556

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           ++SL  HSEK+A+AFGLISTQP T ++I KNLR+C DCH+  KLISK   RKI++RDR R
Sbjct: 557 ESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKR 616

Query: 466 FHHFVNGTCSCGDYW 480
           FHHFVNG+CSC DYW
Sbjct: 617 FHHFVNGSCSCMDYW 631



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 123/279 (44%), Gaps = 50/279 (17%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACG 118
           AR +F  M   +   +N +I   ++     +AL++F  M+ +  VEPN  T  +V  ACG
Sbjct: 64  ARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG 123

Query: 119 QIGALESGRWIHS--------------------YI------------------------- 133
           +   L  GR +H                     Y+                         
Sbjct: 124 RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIR 183

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           +  R +  +V +   +I+ Y + G L+ AR +FD +  + VV WN MI GYA  G  K+A
Sbjct: 184 DKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEA 243

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCMV 252
           +++F EM    + P+ +T + +L A +  G +  G+      +++   ++  +     ++
Sbjct: 244 VEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG--SALI 301

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ ++ G +E+A ++   +  + + V W T++    +HG
Sbjct: 302 DMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHG 339


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/481 (48%), Positives = 335/481 (69%), Gaps = 2/481 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           + K     D Y+  +L+++Y+  G ++SA K+F  M  +S+VS  TM+  YA+      A
Sbjct: 101 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 160

Query: 61  RVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
             LF  ME   ++ CWN+MI+G+ +     EAL LF  M    V+ ++VT  ++L AC  
Sbjct: 161 IKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 220

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GALE G+W+H YIE  + I+V+V +GTAL++MY+KCGS++ A  VF  + +KDV+ W +
Sbjct: 221 LGALELGKWLHVYIEKEK-IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTA 279

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +IVG AM G G  AL+LF+EM    +KP  ITF+G+L+AC+HAGLVNEG  +FN+M ++Y
Sbjct: 280 LIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKY 339

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P +EHYGCMV++L RAG++ EA  L+ +M + PD  +   LL ACR+HGN+ + E+ 
Sbjct: 340 GIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERA 399

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A+ LI  +  N GTYVLLSNIY+++ NW+   ++R LM E+ ++K PGCS+IE+   VHE
Sbjct: 400 AQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHE 459

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+ GD+ HP+S EIY  L+++   LK+ GYVP    VL D+ EK+K+N L +HSEKLA+A
Sbjct: 460 FVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIA 519

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FGL+ST PGT I++VKNLRVC DCH+  K IS+   R+I++RDRNRFHHF  G+CSC D+
Sbjct: 520 FGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDF 579

Query: 480 W 480
           W
Sbjct: 580 W 580



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 42/324 (12%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G +  AR++F+ +        N +I GY    L  +A++ ++ M+ + ++P+  T  ++ 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            +C   G L  G+ +H +         +  +   L+NMYS CG L  AR VFD++ +K V
Sbjct: 86  KSC---GVLCEGKQLHCH-STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 141

Query: 175 VVWNSMIVGYA---------------------------MHGFGKD-----ALQLFNEMCR 202
           V W +MI  YA                           ++G  +D     AL LFNEM  
Sbjct: 142 VSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQL 201

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             +K   +T   LL AC H G +  G ++ +   ++  IE  V     +V++ ++ G +E
Sbjct: 202 SGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 260

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGN-IALGEKIAEYLISQNLANSGTY--VLLSN 319
            A ++  +M  E D + W  L+    + G  +   E   E  +S+   ++ T+  VL + 
Sbjct: 261 SAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAAC 319

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQ 343
            +A + N +G+A   ++  + G+Q
Sbjct: 320 SHAGLVN-EGIAYFNSMPNKYGIQ 342


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/437 (52%), Positives = 314/437 (71%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K G++  AR LFDDM E+DV+ WNVMI GY       EAL LFR MLA  V
Sbjct: 299 VNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGV 358

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP E+T +++L +C  +GA++ G+WIH+YI  + N        T+LI++Y+KCG++  AR
Sbjct: 359 EPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLS-TSLIDLYAKCGNIVAAR 417

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD +  K +  WN+MI G AMHG    A +LF++M    ++P++ITF+G+LSAC HAG
Sbjct: 418 QVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAG 477

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+ G++FF++M  +Y I PK +HYGCM++LL RAG  EEA  L+ +M+++PD  +WG+L
Sbjct: 478 LVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSL 537

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR HG + LGE +AE L      N G YVLLSNIYA  G WD VAR+RT + ++G++
Sbjct: 538 LGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMK 597

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGC++IE+ N VHEFL GD  HP+S++IY MLEE++  LK  G+V  T  VL+D+ E+
Sbjct: 598 KVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEE 657

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+ +L  HSEKLA+AFGLIST+PGT I+I+KNLRVC +CH+  KLISK   R+I+ RDR
Sbjct: 658 WKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDR 717

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G+CSC DYW
Sbjct: 718 NRFHHFKDGSCSCNDYW 734



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 146/282 (51%), Gaps = 36/282 (12%)

Query: 38  QRSLVSLTTML--TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
             +L +L+ ++  +  ++ G+++ A  LF+ +EE ++  WN MI G +       ALV F
Sbjct: 58  HNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFF 117

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            RM+   VEPN  T   +L +C ++ +   G+ IH+++     +  +V + T+LINMY++
Sbjct: 118 VRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVS-DVFIHTSLINMYAQ 176

Query: 156 CGSLKDARLVFDRVND-------------------------------KDVVVWNSMIVGY 184
            G + +A+LVFD+ N                                KDVV WN+MI GY
Sbjct: 177 SGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGY 236

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A  G  K+AL LF +M +  + P++ T + +LSACA +  ++ G    + ++D   +   
Sbjct: 237 AQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDR-GLCSN 295

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           ++    ++++ S+ G ++ A +L  DM +E D + W  ++G 
Sbjct: 296 LKLVNALIDMYSKCGDLQTARELFDDM-LERDVISWNVMIGG 336



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 32/173 (18%)

Query: 17  VDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           +DLYA+ G++++A ++F  M  +SL S   M                         +C  
Sbjct: 404 IDLYAKCGNIVAARQVFDGMKIKSLASWNAM-------------------------IC-- 436

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
               G A HG A++A  LF +M ++ +EPNE+T V +LSAC   G ++ G+   S +   
Sbjct: 437 ----GLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQD 492

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMHG 188
             I    Q    +I++  + G  ++A  +   +  K D  +W S++     HG
Sbjct: 493 YKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHG 545



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 4/139 (2%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           S+ G +  A  +F+ + + ++ +WNSMI G +M      AL  F  M    ++P+  TF 
Sbjct: 74  SRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFP 133

Query: 214 GLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            LL +CA     +EG++   + +K  +  +  +  +  ++N+ +++G++  A +LV D  
Sbjct: 134 FLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFI--HTSLINMYAQSGEMNNA-QLVFDQS 190

Query: 273 IEPDSVLWGTLLGACRLHG 291
              D++ +  L+    L G
Sbjct: 191 NFRDAISFTALIAGYALWG 209


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/477 (50%), Positives = 325/477 (68%), Gaps = 3/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           + + L +S +++D+Y + G V  A++LF  MP++ +VS TTML  YAK GE  AA+ +FD
Sbjct: 268 IGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFD 327

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALE 124
            M  +D+  WN +I  Y Q G   EAL LF  + L++  +P+EVT V+ LSAC Q+GA++
Sbjct: 328 AMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMD 387

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G WIH YI+  + +K+N  + T+LI+MY KCG L+ A +VF  V  KDV VW++MI G 
Sbjct: 388 LGGWIHVYIKK-QGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGL 446

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           AMHG GKDA+ LF++M   ++KP+ +TF  +L AC+H GLV EGR FFN M+  Y + P 
Sbjct: 447 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPG 506

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           V+HY CMV++L RAG +EEA +L+  M + P + +WG LLGAC +H N+ L E+    LI
Sbjct: 507 VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLI 566

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                N G YVLLSNIYA  G WD V+ +R LM++ G++KEPGCSSIE+   VHEFL GD
Sbjct: 567 ELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 626

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLI 423
             HP +K+IY  L+EI   L+  GYVP    +L  + E+  K+ +L +HSEKLA+AFGLI
Sbjct: 627 NSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLI 686

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ST     I+IVKNLRVC DCH+V KL+SK   R+I++RDR RFHHF  G CSC DYW
Sbjct: 687 STGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 168/332 (50%), Gaps = 45/332 (13%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  YAK GE+     +F ++  +DVV WN MI  + Q G   EAL LF+ M  + V
Sbjct: 174 LNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV 233

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +PN +T V VLSAC +    E GRW+HSYIE +R I  ++ +  A+++MY+KCGS++DA+
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR-IGESLTLSNAMLDMYTKCGSVEDAK 292

Query: 164 LVFDRVNDKDVVVWNSMIVGYA-------------------------------MHGFGKD 192
            +FD++ +KD+V W +M+VGYA                                 G  K+
Sbjct: 293 RLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKE 352

Query: 193 ALQLFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           AL+LF+E+   +  KP ++T +  LSACA  G ++ G      +K +  ++        +
Sbjct: 353 ALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ-GMKLNCHLTTSL 411

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAEYLISQN 307
           +++  + G +++A  +   ++   D  +W  ++    +HG+    IAL  K+ E  +  N
Sbjct: 412 IDMYCKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPN 470

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
                  V  +NI  A  +   V   RT   +
Sbjct: 471 A------VTFTNILCACSHVGLVEEGRTFFNQ 496



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 142/290 (48%), Gaps = 25/290 (8%)

Query: 25  DVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           D  SA +L          SL      YA+Q        +FD +   ++  WN +I  YA 
Sbjct: 66  DPFSASRLITAAALSPFPSLD-----YAQQ--------VFDQIPHPNLYTWNTLIRAYAS 112

Query: 85  HGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-- 141
               +++L++F RML +  + P++ T   ++ A  ++  L +G+  H  +     IKV  
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMV-----IKVLL 167

Query: 142 --NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
             +V +  +LI+ Y+KCG L     VF  +  +DVV WNSMI  +   G  ++AL+LF E
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M    +KP+ IT +G+LSACA       G R+ ++  +   I   +     M+++ ++ G
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIGESLTLSNAMLDMYTKCG 286

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            VE+A +L  D   E D V W T+L      G     + I + + +Q++A
Sbjct: 287 SVEDAKRL-FDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIA 335



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 85/227 (37%), Gaps = 41/227 (18%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITF 212
           S   SL  A+ VFD++   ++  WN++I  YA       +L +F  M       P   TF
Sbjct: 80  SPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTF 139

Query: 213 IGLLSACAHAGLVNEGRRF---------------FNTMKDEYA---------------IE 242
             L+ A +    +  G+ F                N++   YA                 
Sbjct: 140 PFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPR 199

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
             V  +  M+    + G  EEA +L  +M+   ++P+ +    +L AC    +   G  +
Sbjct: 200 RDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWV 259

Query: 300 AEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLMKEKGV 342
             Y+    +  S T   LSN    +Y   G+ +   R+   M EK +
Sbjct: 260 HSYIERNRIGESLT---LSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/477 (49%), Positives = 325/477 (68%), Gaps = 3/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D +L +S +++D+Y + G +  A +LF  M ++ +VS TTM+  YAK G+  AAR +FD
Sbjct: 263 IDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFD 322

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALE 124
            M  +D+  WN +I  Y Q+G   EAL +FR + L +  +PNEVT  + L+AC Q+GA++
Sbjct: 323 VMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMD 382

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G WIH YI+  + IK+N  + T+LI+MYSKCG L+ A  VF  V  +DV VW++MI G 
Sbjct: 383 LGGWIHVYIKK-QGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGL 441

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           AMHG G+ A+ LF++M   ++KP+ +TF  LL AC+H+GLV+EGR FFN M+  Y + P 
Sbjct: 442 AMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPG 501

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV++L RAG +EEA +L+  M I P + +WG LLGACR++GN+ L E     L+
Sbjct: 502 SKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLL 561

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
             +  N G YVLLSNIYA  G WD V+R+R  MK  G++KEPGCSSIE++  +HEFL GD
Sbjct: 562 ETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGD 621

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK-QKQNSLEVHSEKLAVAFGLI 423
             HP S EIY  L+EI   +K+ GYV     +L  + E+  K+++L +HSEKLA+A+GLI
Sbjct: 622 NSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLI 681

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             +P   I+IVKNLRVC DCH+V KLISK   R I++RDR RFHHF  G CSC DYW
Sbjct: 682 RMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 154/298 (51%), Gaps = 39/298 (13%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y+  G++ +A ++F  + EKD+V WN MI G+ Q G   EAL LF+RM  E   P
Sbjct: 171 SLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARP 230

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT V VLSAC +   LE GRW   YIE +  I +N+ +  A+++MY KCGSL+DAR +
Sbjct: 231 NRVTMVGVLSACAKRIDLEFGRWACDYIERN-GIDINLILSNAMLDMYVKCGSLEDARRL 289

Query: 166 FDRVNDKDVVVWNSMIVGYA-------------------------------MHGFGKDAL 194
           FD++ +KD+V W +MI GYA                                +G  K+AL
Sbjct: 290 FDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEAL 349

Query: 195 QLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
            +F E+      KP+++T    L+ACA  G ++ G      +K +  I+        +++
Sbjct: 350 AIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ-GIKLNFHITTSLID 408

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAEYLISQN 307
           + S+ G +E+A ++   ++   D  +W  ++    +HG+    I L  K+ E  +  N
Sbjct: 409 MYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPN 465



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 132/261 (50%), Gaps = 17/261 (6%)

Query: 25  DVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           D  SA KLF      S  SL      YA +        +FD +   ++  WN +I  +A 
Sbjct: 61  DPPSATKLFTACALSSPSSLD-----YACK--------VFDQIPRPNLYTWNTLIRAFAS 107

Query: 85  HGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
                + L++F +ML E    PN  T   V+ A  ++ +L +G+ IH  +  + +   ++
Sbjct: 108 SPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKA-SFGSDL 166

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +  +LI+ YS  G L  A LVF ++ +KD+V WNSMI G+   G  ++ALQLF  M   
Sbjct: 167 FISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKME 226

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
             +P+ +T +G+LSACA    +  GR   + + +   I+  +     M+++  + G +E+
Sbjct: 227 NARPNRVTMVGVLSACAKRIDLEFGRWACDYI-ERNGIDINLILSNAMLDMYVKCGSLED 285

Query: 264 AYKLVMDMKIEPDSVLWGTLL 284
           A +L   M+ E D V W T++
Sbjct: 286 ARRLFDKME-EKDIVSWTTMI 305



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 41/227 (18%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITF 212
           S   SL  A  VFD++   ++  WN++I  +A        L +F +M     + P+  TF
Sbjct: 75  SSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTF 134

Query: 213 I----------GLLSACAHAGLV------------NEGRRFFNTMKD--------EYAIE 242
                       LL+  A  G+V            N    F++++ D           +E
Sbjct: 135 PFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVE 194

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKI 299
             +  +  M++   + G  EEA +L   MK+E   P+ V    +L AC    ++  G   
Sbjct: 195 KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254

Query: 300 AEYL----ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            +Y+    I  NL  S   +   ++Y   G+ +   R+   M+EK +
Sbjct: 255 CDYIERNGIDINLILSNAML---DMYVKCGSLEDARRLFDKMEEKDI 298


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/437 (52%), Positives = 316/437 (72%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K G++  AR LF+ + EKD++ WNVMI GY+      EAL LFR+M    V
Sbjct: 302 VNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EPN+VT V++L AC  +GAL+ G+WIH+YI+       N  + T+LI+MY+KCG+++ A+
Sbjct: 362 EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK 421

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  +  K +  WN+MI G AMHG    AL+LF +M     +P DITF+G+LSAC+HAG
Sbjct: 422 QVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV  GR+ F++M ++Y I PK++HYGCM++LL RAG  +EA  L+ +M+++PD  +WG+L
Sbjct: 482 LVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSL 541

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+HGN+ LGE  A++L      N G YVLLSNIYA  G WD VAR+RT + +KG++
Sbjct: 542 LGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMK 601

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCSSIE+ + VHEFL GD  H +S++IY ML+EI+  L+  G+VP T  VL+D+ E+
Sbjct: 602 KVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEE 661

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+ SL  HSEKLA+AFGLIST+P T+I+IVKNLRVC +CH+  KLISK   R+I+ RDR
Sbjct: 662 WKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDR 721

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G+CSC DYW
Sbjct: 722 NRFHHFKDGSCSCMDYW 738



 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 178/297 (59%), Gaps = 6/297 (2%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ D +V TSL+++YA+ G++  AE +F+    R  VS T ++T Y  +G +  AR
Sbjct: 159 LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDAR 218

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF+++  +D V WN MI GYAQ G   EAL  F+ M    V PNE T V VLSAC Q G
Sbjct: 219 RLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSG 278

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +LE G W+ S+IE+   +  N+++  ALI+MYSKCG L  AR +F+ + +KD++ WN MI
Sbjct: 279 SLELGNWVRSWIED-HGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMI 337

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY+     K+AL LF +M +  ++P+D+TF+ +L ACA+ G ++ G+     +  ++  
Sbjct: 338 GGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLG 397

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHG--NIAL 295
                 +  ++++ ++ G +E A ++   MK  P S+  W  ++    +HG  N+AL
Sbjct: 398 LTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGHANMAL 452



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 158/354 (44%), Gaps = 67/354 (18%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G ++ A +LF+ +E+ +   WN MI G +       A+  + RML   VEPN  T   +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS---------------- 158
            +C ++GA + G+ IH ++     ++ +  V T+LINMY++ G                 
Sbjct: 140 KSCAKVGATQEGKQIHGHVLK-LGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 159 ---------------LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
                          L DAR +F+ +  +D V WN+MI GYA  G  ++AL  F EM R 
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYA-------- 240
            + P++ T + +LSACA +G +  G                R  N + D Y+        
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 241 -------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLH 290
                   E  +  +  M+   S     +EA  L   M+   +EP+ V + ++L AC   
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 291 GNIALGEKIAEYLISQ--NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           G + LG+ I  Y+  +   L N+  +  L ++YA  GN +   +V   MK K +
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSL 432



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 32/176 (18%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TSL+D+YA+ G++ +A+++FA M  +SL S   M                          
Sbjct: 405 TSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM-------------------------- 438

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
                I G A HG AN AL LFR+M  E  EP+++T V VLSAC   G +E GR   S +
Sbjct: 439 -----ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM 493

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMHG 188
               +I   +Q    +I++  + G   +A  +   +  K D  +W S++    +HG
Sbjct: 494 VEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHG 549



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           S  G+L  A L+F+ +   +  +WN+MI G ++      A+  +  M    ++P+  TF 
Sbjct: 77  SPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFP 136

Query: 214 GLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            LL +CA  G   EG++   + +K     +P V  +  ++N+ ++ G++  A +LV    
Sbjct: 137 FLLKSCAKVGATQEGKQIHGHVLKLGLESDPFV--HTSLINMYAQNGELGYA-ELVFSKS 193

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAE 301
              D+V +  L+    L G +    ++ E
Sbjct: 194 SLRDAVSFTALITGYTLRGCLDDARRLFE 222


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/480 (51%), Positives = 330/480 (68%), Gaps = 2/480 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   + D Y+ +SL+ LYA G D+ +A++LF     R +VS   M+  Y K  E+  AR
Sbjct: 193 VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHAR 252

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++FD M  +DV+ WN MI+GYA  G  NEAL LF +M A  V+P E T V++LSAC  +G
Sbjct: 253 MVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLG 312

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G  +H+YI ++R I+VN  VGTAL++MY+KCG +  A  VF+ +  KDV+ WN++I
Sbjct: 313 ALDKGLHLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTII 371

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A+HG  K+A QLF EM    ++P+DITF+ +LSAC+HAG+V+EG++  + M   Y I
Sbjct: 372 AGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGI 431

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EPKVEHYGC+++LL+RAG +EEA +L+  M +EP+    G LLG CR+HGN  LGE + +
Sbjct: 432 EPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGK 491

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI+    +SG Y+LLSNIYAA   WD   +VR LMK  G+ K PG S IEL   VH F+
Sbjct: 492 RLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFV 551

Query: 362 AGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           AGD  HP+S +IY  L EI+  LK A GY   T  VL D+ E+ K+++L VHSEKLA+A+
Sbjct: 552 AGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAY 611

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+      +I+IVKNLRVC DCH V KLISK  GR+I++RDRNRFHHF +G CSC D+W
Sbjct: 612 GLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 133/273 (48%), Gaps = 32/273 (11%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           +A A+ +F  ++      +N +I   +      EAL L+  ML   ++P+ +T   V+ A
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175

Query: 117 CGQIGALESGRWIHSYI-------------------ENSRNIKVNVQV-----------G 146
           C +      G  +H+++                    N +++    Q+            
Sbjct: 176 CNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSW 235

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
            A+I+ Y K   +  AR+VFDR+  +DV+ WN+MI GYA+ G   +AL LF++M  + +K
Sbjct: 236 NAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVK 295

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P++ T + LLSACAH G +++G      + D   IE        +V++ ++ G++  A +
Sbjct: 296 PTEATVVSLLSACAHLGALDKGLHLHTYINDN-RIEVNSIVGTALVDMYAKCGKISLATQ 354

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           +   M+ + D + W T++    +HGN+   +++
Sbjct: 355 VFNAMESK-DVLAWNTIIAGMAIHGNVKEAQQL 386


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/473 (48%), Positives = 325/473 (68%), Gaps = 1/473 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D+++   ++  Y    +V  A K+F  MP R LVS  TM+  YA +GEV  AR +FD  
Sbjct: 21  RDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGT 80

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
           E++D   W+ MI  YA+   + EAL L+R M A  + P+ +T V+V+SAC  +GAL  G 
Sbjct: 81  EDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGA 140

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H ++E++R I++++++GTALI+MY+KCG ++ A+ VFDR+ +KDV  W+SMI+G A H
Sbjct: 141 EVHRFVESNR-IELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANH 199

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G G ++L LF++M    +KP+ +TF+G+L AC H GLV+EG+++F +M + + IEP VEH
Sbjct: 200 GLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEH 259

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGCMV+LL R+G VEEA +L+  M  EPD+++W  LLGACR+H N+ + E+    L   +
Sbjct: 260 YGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLD 319

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
               G YVLLSNIYA   +W+GVA +R  ++   +Q+ PG SSIE   K+HEF++GD  H
Sbjct: 320 PLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLH 379

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+SKEIY +LEE+   LK  GY P T +VL DI E+ K+ SL  HSEKLA+AF L++T  
Sbjct: 380 PRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPA 439

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ++I+I KNLR C DCH+  KLIS    RK+++RDRNRFHHF  G CSC DYW
Sbjct: 440 RSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 32/183 (17%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++ DL + T+L+D+YA+ GD+ SA+++F  MP                            
Sbjct: 151 IELDLKLGTALIDMYAKCGDIESAQRVFDRMP---------------------------- 182

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
              EKDV  W+ MI G A HGL +E+L LF +M++E ++PN VT V VL AC  +G +  
Sbjct: 183 ---EKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSE 239

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGY 184
           G+     +     I+  V+    ++++  + G +++AR L+     + D ++W +++   
Sbjct: 240 GKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGAC 299

Query: 185 AMH 187
            +H
Sbjct: 300 RIH 302


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/479 (48%), Positives = 326/479 (68%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + D+ V T+LV +YAR G +  A  +F  M +RS  +   M+T +A+  ++  A 
Sbjct: 37  IKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKAL 96

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF +M E+DVV W  +I GYAQ+G  +E+L +F +M    ++ +     +VLSAC  + 
Sbjct: 97  KLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLA 156

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE GR  H+Y+  S    +++ VG+AL++MY+K GS++DA  VFD++  ++ V WNS+I
Sbjct: 157 ALELGRQFHAYVVQS-GFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSII 215

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A HG G DA+ LF +M +  +KP++I+F+G+LSAC+H GLVNEGR +FN M   Y I
Sbjct: 216 TGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGI 275

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P V HY CM++LL RAG ++EA   +  M +EPD  +WG LLGACR+HGN  L ++IAE
Sbjct: 276 VPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAE 335

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L+   +  +G YVLLSNIYAA G WD  A+VR LMK++GV K+PG S IE+   +H F+
Sbjct: 336 HLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFV 395

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AG+  HP+ KEI+  LE ++  +KA GYVP    VL D+ + +K+ SL  HSEKLA+AFG
Sbjct: 396 AGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFG 455

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I+T PGT+I++ KNLRVC DCH V K IS    RKI++RD NRFHHF +G CSCGDYW
Sbjct: 456 IINTNPGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 36/226 (15%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+ + V+PN+ T   V+ AC  I +LE G+  H+YI      + +V V TAL++MY++CG
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIK-MGFESDVVVQTALVHMYARCG 59

Query: 158 SLKDARLVFDR-------------------------------VNDKDVVVWNSMIVGYAM 186
           SL+DA  VFD+                               ++++DVV W ++I GYA 
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKV 245
           +G+G ++L +FN+M +  +K        +LSACA    +  GR+F    ++  +A++  V
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                +V++ +++G +E+A + V D   + + V W +++  C  HG
Sbjct: 180 G--SALVDMYAKSGSMEDACQ-VFDKMPQRNEVSWNSIITGCAQHG 222


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/468 (48%), Positives = 331/468 (70%), Gaps = 6/468 (1%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +++D Y R G+V +A +LF  MP RS++S    M++ +++ G V  AR  FD+M+E+D +
Sbjct: 209 AMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI 268

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MIDGY Q G   EAL +F +M  EK+ P +    +VLSAC  +GAL+ GRWIH+Y 
Sbjct: 269 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 328

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           + + +I+++  +GT+L++MY+KCG +  A  VF+++++K+V  WN+MI G AMHG  +DA
Sbjct: 329 KRN-SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDA 387

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           + LF++M    + P++ITF+G+L+ACAH GLV +G   FN+M+ EY +EP++EHYGC+V+
Sbjct: 388 IDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 444

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG + EA K+V  +  EP   +WG LLGACR HGN+ LGE++ + L+     NSG 
Sbjct: 445 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGR 504

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS-NKVHEFLAGDLRHPKSKE 372
           Y LLSNIYA  G W+ V  VR LMKE+G++  PG S I+L   +VH+F+ GD  HP+ K+
Sbjct: 505 YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKD 564

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           IY ML+++   L+ EGY P    VL DI E++K+ ++  HSEKLA+ FGLI+T PGT+I+
Sbjct: 565 IYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIR 624

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IVKNLRVC DCH+  KLIS+   R+I++RDR R+HHF NG CSC D+W
Sbjct: 625 IVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 42/249 (16%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           L++ +  YA  G +  AR + DD   E D VCWN MIDGY + G    A  LF  M    
Sbjct: 175 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM---- 230

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+                                 +  +    A+I+ +S+CG ++ A
Sbjct: 231 --PD---------------------------------RSMISTWNAMISGFSRCGMVEVA 255

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R  FD + ++D + W++MI GY   G   +AL++F++M + +++P       +LSACA+ 
Sbjct: 256 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 315

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G +++G R+ +T     +I+        +V++ ++ G+++ A+++   M  +  S  W  
Sbjct: 316 GALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS-WNA 373

Query: 283 LLGACRLHG 291
           ++G   +HG
Sbjct: 374 MIGGLAMHG 382



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 18/287 (6%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD + + +V  WN MI    ++    +A++L+  M+     PN+ T  AVL AC   G 
Sbjct: 93  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 152

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDKDVVVWNSMI 181
           +  G  +H+++     +  +  + ++ I MY+  G L +AR +  D+  + D V WN+MI
Sbjct: 153 VAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 211

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK--DEY 239
            GY   G  + A +LF  M    +     T+  ++S  +  G+V   R FF+ MK  DE 
Sbjct: 212 DGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKERDEI 268

Query: 240 AIEPKVEHY---GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +    ++ Y   GC +  L       E +  +   KI P   +  ++L AC   G +  G
Sbjct: 269 SWSAMIDGYIQEGCFMEAL-------EIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 321

Query: 297 EKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             I  Y    ++   G     L ++YA  G  D    V   M  K V
Sbjct: 322 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEV 368



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L +G    SYI  S  +K    V T   N Y    S + +  VFD V   +V +WN MI 
Sbjct: 58  LRTGHLQDSYIAGSL-VKSYANVST---NRYL---SFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
               +     A+ L+ EM     +P+  T+  +L AC+ AG+V EG +    +  ++ + 
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLV-KHGLG 169

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
                    + + +  G++ EA +++ D   E D+V W  ++      G +    ++ E 
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEG 229

Query: 303 LISQNLANS 311
           +  +++ ++
Sbjct: 230 MPDRSMIST 238


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/468 (48%), Positives = 331/468 (70%), Gaps = 6/468 (1%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +++D Y R G+V +A +LF  MP RS++S    M++ +++ G V  AR  FD+M+E+D +
Sbjct: 210 AMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEI 269

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MIDGY Q G   EAL +F +M  EK+ P +    +VLSAC  +GAL+ GRWIH+Y 
Sbjct: 270 SWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYA 329

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           + + +I+++  +GT+L++MY+KCG +  A  VF+++++K+V  WN+MI G AMHG  +DA
Sbjct: 330 KRN-SIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDA 388

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           + LF++M    + P++ITF+G+L+ACAH GLV +G   FN+M+ EY +EP++EHYGC+V+
Sbjct: 389 IDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 445

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG + EA K+V  +  EP   +WG LLGACR HGN+ LGE++ + L+     NSG 
Sbjct: 446 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGR 505

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS-NKVHEFLAGDLRHPKSKE 372
           Y LLSNIYA  G W+ V  VR LMKE+G++  PG S I+L   +VH+F+ GD  HP+ K+
Sbjct: 506 YTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKD 565

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           IY ML+++   L+ EGY P    VL DI E++K+ ++  HSEKLA+ FGLI+T PGT+I+
Sbjct: 566 IYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIR 625

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IVKNLRVC DCH+  KLIS+   R+I++RDR R+HHF NG CSC D+W
Sbjct: 626 IVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 142/308 (46%), Gaps = 53/308 (17%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           L++ +  YA  G +  AR + DD   E D VCWN MIDGY + G    A  LF  M    
Sbjct: 176 LSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM---- 231

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+                                 +  +    A+I+ +S+CG ++ A
Sbjct: 232 --PD---------------------------------RSMISTWNAMISGFSRCGMVEVA 256

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R  FD + ++D + W++MI GY   G   +AL++F++M + +++P       +LSACA+ 
Sbjct: 257 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 316

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G +++G R+ +T     +I+        +V++ ++ G+++ A+++   M  +  S  W  
Sbjct: 317 GALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS-WNA 374

Query: 283 LLGACRLHGN----IALGEKIAEYLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLM 337
           ++G   +HG     I L  K+  Y       N  T+V + N  A  G    G+    ++ 
Sbjct: 375 MIGGLAMHGRAEDAIDLFSKMDIY------PNEITFVGVLNACAHGGLVQKGLTIFNSMR 428

Query: 338 KEKGVQKE 345
           KE GV+ +
Sbjct: 429 KEYGVEPQ 436



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 18/287 (6%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD + + +V  WN MI    ++    +A++L+  M+     PN+ T  AVL AC   G 
Sbjct: 94  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGV 153

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDKDVVVWNSMI 181
           +  G  +H+++     +  +  + ++ I MY+  G L +AR +  D+  + D V WN+MI
Sbjct: 154 VAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK--DEY 239
            GY   G  + A +LF  M    +     T+  ++S  +  G+V   R FF+ MK  DE 
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKERDEI 269

Query: 240 AIEPKVEHY---GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +    ++ Y   GC +  L       E +  +   KI P   +  ++L AC   G +  G
Sbjct: 270 SWSAMIDGYIQEGCFMEAL-------EIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG 322

Query: 297 EKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             I  Y    ++   G     L ++YA  G  D    V   M  K V
Sbjct: 323 RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEV 369



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L +G    SYI  S  +K    V T   N Y    S + +  VFD V   +V +WN MI 
Sbjct: 59  LRTGHLQDSYIAGSL-VKSYANVST---NRYL---SFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
               +     A+ L+ EM     +P+  T+  +L AC+ +G+V EG +    +  ++ + 
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLV-KHGLG 170

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
                    + + +  G++ EA +++ D   E D+V W  ++      G +    ++ E 
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEG 230

Query: 303 LISQNLANS 311
           +  +++ ++
Sbjct: 231 MPDRSMIST 239


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/447 (51%), Positives = 315/447 (70%), Gaps = 7/447 (1%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           ++L  +  ++  Y+K GE+  AR LFD ME+KDV+ WN MI GY    L  EALVLF  M
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVM 351

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK-----VNVQVGTALINMY 153
           L E V PN+VT +AVL AC  +GAL+ G+W+H+YI+  +N+K      NV + T++I MY
Sbjct: 352 LRENVTPNDVTFLAVLPACASLGALDLGKWVHAYID--KNLKGTGNVNNVSLWTSIIVMY 409

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +KCG ++ A  VF  +  + +  WN+MI G AM+G  + AL LF EM     +P DITF+
Sbjct: 410 AKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFV 469

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
           G+LSAC  AG V  G R+F++M  +Y I PK++HYGCM++LL+R+G+ +EA  L+ +M++
Sbjct: 470 GVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEM 529

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
           EPD  +WG+LL ACR+HG +  GE +AE L      NSG YVLLSNIYA  G WD VA++
Sbjct: 530 EPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKI 589

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           RT + +KG++K PGC+SIE+   VHEFL GD  HP+S+ I+ ML+E++  L+  G+VP T
Sbjct: 590 RTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDT 649

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VL+D+ E+ K+ +L  HSEKLA+AFGLIST+PG++I+IVKNLRVC +CH+  KLISK 
Sbjct: 650 SEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKI 709

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             R+I+ RDRNRFHHF +G CSC D W
Sbjct: 710 FNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 149/310 (48%), Gaps = 43/310 (13%)

Query: 56  EVAAARVLFDDMEEK--DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
           +++ A  LF  +  +  ++  WN +I  ++       +L LF +ML   + PN  T  ++
Sbjct: 74  DLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSL 133

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR----- 168
             +C +  A    + +H++      + ++  V T+LI+MYS+ G L+ ARLVFD+     
Sbjct: 134 FKSCAKSKATHEAKQLHAHALK-LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRD 192

Query: 169 ----------------VND----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
                           V+D          KDVV WN+MI GY   G  ++AL  F  M  
Sbjct: 193 AVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQE 252

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             + P+  T + +LSAC H   +  G+   + ++D       ++    +V++ S+ G++ 
Sbjct: 253 ADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDR-GFGKNLQLVNALVDMYSKCGEIG 311

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK---IAEYLISQNLA-NSGTYVLLS 318
            A KL   M+ + D +LW T++G    + +++L E+   + E ++ +N+  N  T++ + 
Sbjct: 312 TARKLFDGME-DKDVILWNTMIGG---YCHLSLYEEALVLFEVMLRENVTPNDVTFLAVL 367

Query: 319 NIYAAIGNWD 328
              A++G  D
Sbjct: 368 PACASLGALD 377



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 32/176 (18%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TS++ +YA+ G V  AE++F +M  RSL S   M++                        
Sbjct: 403 TSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS------------------------ 438

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
                  G A +G A  AL LF  M+ E  +P+++T V VLSAC Q G +E G    S +
Sbjct: 439 -------GLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSM 491

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
                I   +Q    +I++ ++ G   +A+++   +  + D  +W S++    +HG
Sbjct: 492 NKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/478 (48%), Positives = 327/478 (68%), Gaps = 2/478 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  + DL+VS++LVD+Y++ G++  A  LF  +  R++VS T+M+T Y +  +   A  +
Sbjct: 105 FGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRV 164

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGA 122
           FD M E+DV+ WN +I  YAQ+G++ E++ +F RM+ + ++  N VT  AVL AC   G+
Sbjct: 165 FDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGS 224

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
              G+ IH  +     ++ NV VGT++I+MY KCG ++ AR  FDR+ +K+V  W++M+ 
Sbjct: 225 QRLGKCIHDQVIK-MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA 283

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY MHG  K+AL++F EM    +KP+ ITF+ +L+AC+HAGL+ EG  +F  M  E+ +E
Sbjct: 284 GYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVE 343

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P VEHYGCMV+LL RAG ++EA+ L+  MK+ PD V+WG LLGACR+H N+ LGE  A  
Sbjct: 344 PGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARK 403

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L   +  N G YVLLSNIYA  G W+ V R+R LMK  G+ K PG S +++  +VH FL 
Sbjct: 404 LFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLV 463

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP+ ++IY  LE+++  L+  GYVP    VLHD+G ++K+  L VHSEKLAVAFG+
Sbjct: 464 GDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGI 523

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++T PGT+I I+KNLRVC DCH   K ISK   R+I++RD  RFHHF +G CSCGDYW
Sbjct: 524 MNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 133/290 (45%), Gaps = 39/290 (13%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +++ +V  WN +I   A+ G + EAL  F  M    ++PN  T    + +C  +  L SG
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG--- 183
           R  H         + ++ V +AL++MYSKCG L+DAR +FD ++ +++V W SMI G   
Sbjct: 96  RQAHQQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 154

Query: 184 ----------------------------YAMHGFGKDALQLFNEMCRI-RLKPSDITFIG 214
                                       YA +G   +++++F+ M +   +  + +T   
Sbjct: 155 NDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSA 214

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +L ACAH+G    G+   + +  +  +E  V     ++++  + G+VE A K    M+ E
Sbjct: 215 VLLACAHSGSQRLGKCIHDQVI-KMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-E 272

Query: 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-SGTYVLLSNIYAA 323
            +   W  ++    +HG+    ++  E     N+A     Y+   ++ AA
Sbjct: 273 KNVKSWSAMVAGYGMHGH---AKEALEVFYEMNMAGVKPNYITFVSVLAA 319



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 49/252 (19%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+ +++V TS++D+Y + G V  A K F  M ++++ S + M+            
Sbjct: 235 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA----------- 283

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GY  HG A EAL +F  M    V+PN +T V+VL+AC   
Sbjct: 284 --------------------GYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHA 323

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVV 176
           G LE G      + +  +++  V+    ++++  + G LK+A   FD +       D VV
Sbjct: 324 GLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA---FDLIKGMKLRPDFVV 380

Query: 177 WNSMIVGYAMH---GFGK-DALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGRRF 231
           W +++    MH     G+  A +LF       L P +  +  LLS   A AG   +  R 
Sbjct: 381 WGALLGACRMHKNVDLGEISARKLFE------LDPKNCGYYVLLSNIYADAGRWEDVERM 434

Query: 232 FNTMKDEYAIEP 243
              MK+   ++P
Sbjct: 435 RILMKNSGLVKP 446



 Score = 45.1 bits (105), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)

Query: 165 VFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +F++  DK +V  WNS+I   A  G   +AL+ F+ M ++ LKP+  TF   + +C+   
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ GR+  +     +  EP +     +V++ S+ G++ +A + + D     + V W ++
Sbjct: 91  DLHSGRQ-AHQQALIFGFEPDLFVSSALVDMYSKCGELRDA-RTLFDEISHRNIVSWTSM 148

Query: 284 L 284
           +
Sbjct: 149 I 149


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/478 (48%), Positives = 322/478 (67%), Gaps = 1/478 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  ++++   +V LYA  G++  A K+F  MPQR +++   M+    K G+   A  
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYK 200

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF +M E++V  W  MI GYAQ G + EA+ LF  M    + PNEVT VAVL AC  +G 
Sbjct: 201 LFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGN 260

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  GR IH +  N    + N++V   LI+MY KCG L+DA  +FD + ++ VV W++MI 
Sbjct: 261 LVLGRRIHDF-SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G A HG  +DAL LFN+M    +KP+ +TFIG+L AC+H G+V +GR++F +M  +Y I 
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P++EHYGCMV+L SRAG ++EA++ +M+M I P+ V+WG LLG C++H NI L E+   +
Sbjct: 380 PRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRH 439

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L   +  N G YV+LSNIYA  G W+ VARVR LM+++GV+K PG SSI +   V+ F+A
Sbjct: 440 LSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVA 499

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP+++EI+   E++   +K +GYVP T +VL D+ E QK+  L  HSEKLAV FGL
Sbjct: 500 GDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGL 559

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I T PGT I+I+KNLRVC DCHA  K+IS  + R+I++RDRNRFH F NG+CSCGDYW
Sbjct: 560 IKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 35/296 (11%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           L A  L    P  SL  L+ + +  A     + A+++F  ++  +V  WN  +  +A+  
Sbjct: 34  LHAHLLKTNSPLSSL-PLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGD 92

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
              +A+ LF R+    + P+  T   VL AC ++  + +G+ +H Y+E    ++ N+ + 
Sbjct: 93  SPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK-LGLQSNMFLQ 151

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWN---------------------------- 178
             ++++Y+ CG +  AR VFD++  +DV+ WN                            
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211

Query: 179 ---SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
              SMI GYA  G  K+A+ LF EM    L P+++T + +L ACA  G +  GRR  +  
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHD-F 270

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +    E  +     ++++  + G +E+A ++  +M+ E   V W  ++     HG
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME-ERTVVSWSAMIAGLAAHG 325


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/478 (48%), Positives = 330/478 (69%), Gaps = 1/478 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K     ++ VS  LV +YA  G + SA  +F   P+    S   M+  Y K G   +AR 
Sbjct: 164 KLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARR 223

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ M ++DVV W+VMI+GY Q     E L LF+ M+ EK+EPNE   V  LSAC  +GA
Sbjct: 224 MFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGA 283

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           +E G+WI  Y+E  +N+++ V++GTALI+MYSKCGS++ A  VF ++ +K+V+ W++MI 
Sbjct: 284 MEQGQWIERYMER-KNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMIN 342

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G A++G GKDAL LF++M    +KP+++TFIG+L+AC+H+ LV+EG  FF++M   Y ++
Sbjct: 343 GLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLK 402

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P   H+ CMV+L  RAG +++A  ++  M  +P+S +WG LL ACR+HG+  LGE++ + 
Sbjct: 403 PNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKR 462

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L+  +  + G YVLLSNIYAA G WD VA +R +M+E+ V K PGCS I+L + +HEF+A
Sbjct: 463 LLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVA 522

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP+ + IY  L E++  LKA GY P T  VL D+ E++K+ +L  HSEKLA+AFGL
Sbjct: 523 GDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGL 582

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I T PGT+I+I KNLRVC DCH+  KLISK   R+I++RDR RFHHF +G+CSC D+W
Sbjct: 583 IKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 35/273 (12%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTA 110
           +  G +  AR LF  + + D+   N +I  YA      +A+V +  M    V  P+  T 
Sbjct: 80  SPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTF 139

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-- 168
             +L AC +I +L  G  IHS++         V V   L+ MY+ CG ++ A LVFDR  
Sbjct: 140 PLLLKACSEIPSLRLGEAIHSHVFK-LGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTP 198

Query: 169 -----------------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
                                        + D+DVV W+ MI GY      K+ L LF +
Sbjct: 199 ECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQD 258

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M   +++P++   +  LSACAH G + +G+     M+ +  +   V     ++++ S+ G
Sbjct: 259 MMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERK-NVRLTVRLGTALIDMYSKCG 317

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
            VE A ++   MK E + + W  ++    ++G 
Sbjct: 318 SVERALEVFHKMK-EKNVLAWSAMINGLAINGQ 349


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/480 (48%), Positives = 325/480 (67%), Gaps = 1/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +KF    D +   +L+ +Y     +  A ++F  MPQR +VS T+++T Y++ G V  A
Sbjct: 146 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKA 205

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +F+ M E++ V WN MI  Y Q    +EA  LF RM  E V  ++  A ++LSAC  +
Sbjct: 206 REVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGL 265

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE G+WIH YIE S  I+++ ++ T +I+MY KCG L+ A  VF+ +  K +  WN M
Sbjct: 266 GALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCM 324

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G AMHG G+ A++LF EM R  + P  ITF+ +LSACAH+GLV EG+ +F  M +   
Sbjct: 325 IGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLG 384

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           ++P +EH+GCMV+LL RAG +EEA KL+ +M + PD+ + G L+GACR+HGN  LGE+I 
Sbjct: 385 LKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIG 444

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + +I     NSG YVLL+N+YA+ G W+ VA+VR LM ++GV+K PG S IE  + V EF
Sbjct: 445 KKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEF 504

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AG   HP++KEIY  L+EI   +++ GYVP T  VLHDI E++K+N L  HSEKLA+AF
Sbjct: 505 IAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAF 564

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+ T+PG +++I KNLR+C DCH   KLISK   R+I++RDRNRFHHF  G CSC DYW
Sbjct: 565 GLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 73/320 (22%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           +K G++  A  +FD +   D   +N +  GY +  LA   + ++ RML + V PN+ T  
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 112 AVLSACGQIGALESGRWIHSYIEN----SRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
            ++ AC    A+E G+ IH+++      +    +N      LI+MY    SL+ AR VFD
Sbjct: 125 PLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLN-----NLIHMYVNFQSLEQARRVFD 179

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-------------------------- 201
            +  +DVV W S+I GY+  GF   A ++F  M                           
Sbjct: 180 NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFAL 239

Query: 202 --RIRLKP---SDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYA- 240
             R+RL+           +LSAC   G + +G+               +   T+ D Y  
Sbjct: 240 FDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK 299

Query: 241 --------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTL 283
                          +  +  + CM+  L+  G+ E A +L  +M+ E   PD + +  +
Sbjct: 300 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359

Query: 284 LGACRLHGNIALGEKIAEYL 303
           L AC   G +  G+   +Y+
Sbjct: 360 LSACAHSGLVEEGKHYFQYM 379


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 232/472 (49%), Positives = 321/472 (68%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL V  +LVD+YA   D+ SA K+F  M  RS+VS T++L+  A+ G+V  AR LFD M 
Sbjct: 157 DLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMP 216

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+D V W  MIDGY       EAL +FR M    V  +E T V+V++AC Q+GALE G W
Sbjct: 217 ERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEW 276

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +  Y+ + + IK++  VG ALI+MYSKCGS++ A  VF  ++ +D   W ++I+G A++G
Sbjct: 277 VRVYM-SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNG 335

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           + ++A+++F+ M R+   P ++TFIG+L+AC HAGLV++GR FF +M + Y I P V HY
Sbjct: 336 YEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHY 395

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GC+++LL RAG++ EA   +  M + P+S +WGTLL ACR+HGN  +GE +AE L+  + 
Sbjct: 396 GCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDP 455

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NS  Y+LLSNIYA    W+ V R+R  + EKG++KEPGCS IE+   +HEF+AGD  HP
Sbjct: 456 ENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHP 515

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            SKEIY  LE I   L   GY P    V  ++ EK+K+  L  HSEKLA+AF L+S++P 
Sbjct: 516 MSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPN 575

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T I+IVKNLR+C DCH   KLIS+  GR++++RDR RFHHF +G CSC DYW
Sbjct: 576 TVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 37/252 (14%)

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES--GRWIH 130
           V WN +I G+ + G   E+   F  M      P  VT V+VLSACG+ G  +   G  +H
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQVH 146

Query: 131 SYIENSRNIKVNVQVGTALINMYSKC-------------------------------GSL 159
             +  S  +  +++V  AL++MY++C                               G +
Sbjct: 147 GRVVGS-GVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQV 205

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            +AR +FDR+ ++D V W +MI GY      ++AL++F EM    +   + T + +++AC
Sbjct: 206 DEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITAC 265

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G +  G  +         I+        ++++ S+ G +E A  +   M    D   
Sbjct: 266 AQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMH-HRDKFT 323

Query: 280 WGTLLGACRLHG 291
           W  ++    ++G
Sbjct: 324 WTAIILGLAVNG 335



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 120/295 (40%), Gaps = 46/295 (15%)

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSA----CGQIGALESGRWIHSYIENSRNIKVNVQV 145
           +A+  + RMLA    P+  T  A+L A     G  G+    R +H+++     +  N  V
Sbjct: 2   DAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVR-LGMGRNAHV 60

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
            ++L+  Y+  G    AR +    +    V WN++I G+   G   ++   F +M R   
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 206 KPSDITFIGLLSACA------------HAGLVNEG----RRFFNTMKDEYA--------- 240
            P+ +T++ +LSAC             H  +V  G     R  N + D YA         
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 241 ------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG----ACRLH 290
                     V  +  +++ L+R GQV+EA  L  D   E D+V W  ++     A R  
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDL-FDRMPERDTVSWTAMIDGYVWAARFR 237

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
             +   E   E   S   A+  T V +    A +G  +    VR  M  +G++ +
Sbjct: 238 EAL---EMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMD 289


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/469 (48%), Positives = 317/469 (67%), Gaps = 1/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
            +T+L+D+YA+ G +  A +LF  + Q+++VS T M+    +   +  AR LFD  + +D
Sbjct: 264 TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRD 323

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           V+ W  M+  YAQ    ++A  LF +M    V P +VT V++LS C   GAL+ G+W+HS
Sbjct: 324 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 383

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI+  R ++V+  + TAL++MY+KCG +  A  +F     +D+ +WN++I G+AMHG+G+
Sbjct: 384 YIDKER-VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGE 442

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +AL +F EM R  +KP+DITFIGLL AC+HAGLV EG++ F  M   + + P++EHYGCM
Sbjct: 443 EALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCM 502

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG ++EA++++  M I+P++++WG L+ ACRLH N  LGE  A  L+     N 
Sbjct: 503 VDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENC 562

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G  VL+SNIYAA   W   A VR  MK  G++KEPG S IE++  VHEFL GD  HP+ +
Sbjct: 563 GYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIR 622

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
            I  ML E+   L   GYVP T  VL +I E++K+ +L  HSEKLA+AFGLIST P T I
Sbjct: 623 RINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPI 682

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +IVKNLRVC DCHA  KL+SK  GR I++RDRNRFHHF  G CSCGDYW
Sbjct: 683 RIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 138/277 (49%), Gaps = 34/277 (12%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y +   V  AR++FD M E+DVV W+ MI   +++   + AL L R M   +V P+
Sbjct: 165 LMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPS 224

Query: 107 EVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCG-------- 157
           EV  V++++       +  G+ +H+Y I NS N  + V   TAL++MY+KCG        
Sbjct: 225 EVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQL 284

Query: 158 -----------------------SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                                   L++AR +FD   ++DV++W +M+  YA       A 
Sbjct: 285 FNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF 344

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LF++M    ++P+ +T + LLS CA AG ++ G ++ ++  D+  +E        +V++
Sbjct: 345 NLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDM 403

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            ++ G +  A +L ++  I  D  +W  ++    +HG
Sbjct: 404 YAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHG 439



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 139/329 (42%), Gaps = 74/329 (22%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN +I  Y +      AL ++ ++     E +   A +VL ACGQ+   + G+ IH ++ 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
             + +  +V VG AL+ MY +C  ++ ARLVFD++ ++DVV W++MI   + +     AL
Sbjct: 152 -KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210

Query: 195 QLFNEMCRIRLKPSDITFIGLL-------------------------------------- 216
           +L  EM  ++++PS++  + ++                                      
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 270

Query: 217 --SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC------------------------ 250
             + C H GL    R+ FN +  +  +       GC                        
Sbjct: 271 MYAKCGHLGL---ARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIW 327

Query: 251 --MVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             M++  ++A  +++A+ L   M+   + P  V   +LL  C + G + LG+ +  Y+  
Sbjct: 328 TAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDK 387

Query: 306 QNL-ANSGTYVLLSNIYAAIGNWDGVARV 333
           + +  +      L ++YA  G+ +   R+
Sbjct: 388 ERVEVDCILNTALVDMYAKCGDINAAGRL 416



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 32/186 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ D  ++T+LVD+YA+ GD+ +A +LF     R +     ++T +           
Sbjct: 387 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF----------- 435

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                               A HG   EAL +F  M  + V+PN++T + +L AC   G 
Sbjct: 436 --------------------AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 475

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
           +  G+ +   + ++  +   ++    ++++  + G L +A  +   +  K + +VW +++
Sbjct: 476 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535

Query: 182 VGYAMH 187
               +H
Sbjct: 536 AACRLH 541


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/474 (48%), Positives = 331/474 (69%), Gaps = 1/474 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           + D+    +++D Y + G+V +A++LF +M  +++ S   M++  AK G +  AR LF++
Sbjct: 193 NSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNE 252

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M+EK+ + W+ MIDGY + G   EAL +F  M  E++ P +    +VL+AC  +GAL+ G
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG 312

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           RWIH+Y+ N+ N   +  +GTAL++MY+KCG L  A  VF+++  K+V  WN+MI G  M
Sbjct: 313 RWIHAYVNNNSN-SFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGM 371

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG  +DA++LF +M + + +P+ IT +G+LSACAH+G+V+EG R FN+M++ Y IEP +E
Sbjct: 372 HGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGME 431

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYGC+V+LL RAG + EA +++  M +EP + +WG LLGACR HG++ LGE++ + L+  
Sbjct: 432 HYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLEL 491

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              NSG Y LLSNIYA  G WD VA VR LMKE+GV+   G S I+    VHEF  GD  
Sbjct: 492 EPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGS 551

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+ K IY+ML+ +   LK EG+ P T  VL DI E++K+  L+ HSEKLA+AFGLI+T+
Sbjct: 552 HPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTK 611

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PGT+I +VKNLR+C DCH+ FKLIS+   R+I++RDR R+HHF  GTCSC D+W
Sbjct: 612 PGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 143/305 (46%), Gaps = 20/305 (6%)

Query: 46  TMLTCYAKQ--GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T++ CYA      +  A  +F+ +   +V  +N++I G  Q+    +A+  + +M+    
Sbjct: 67  TLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHA 126

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN+ T   +  AC    A E G  +H+++   + +  +V + +A I MY   G ++ AR
Sbjct: 127 RPNKFTYPTLFKACTAAEAAEEGVQVHAHVI-KQGLSGDVHIRSAGIQMYGSFGEVEGAR 185

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +     + DV+ +N+MI GY   G  + A +LF  M    +   ++    ++S  A  G
Sbjct: 186 RMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNV----MVSGMAKCG 241

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLW 280
           ++ E R  FN MK++  I      +  M++   + G  +EA   + ++   +I P   + 
Sbjct: 242 MIEEARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVL 296

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL---LSNIYAAIGNWDGVARVRTLM 337
            ++L AC   G +  G  I  Y+   N +NS   VL   L ++YA  G  D    V   M
Sbjct: 297 SSVLAACANLGALDQGRWIHAYV--NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKM 354

Query: 338 KEKGV 342
           ++K V
Sbjct: 355 EKKEV 359


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/464 (48%), Positives = 325/464 (70%), Gaps = 5/464 (1%)

Query: 21  ARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR  D+ +A+++   + +  +    V  + ++  Y K G    AR LF+ M EK++ CWN
Sbjct: 249 ARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWN 308

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
           +MI+G+ +     EAL LF  M    V+ ++VT  ++L AC  +GALE G+W+H YIE  
Sbjct: 309 IMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE 368

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           + I+V+V +GTAL++MY+KCGS++ A  VF  + +KDV+ W ++IVG AM G G  AL+L
Sbjct: 369 K-IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALEL 427

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F+EM    +KP  ITF+G+L+AC+HAGLVNEG  +FN+M ++Y I+P +EHYGCMV++L 
Sbjct: 428 FHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLG 487

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           RAG++ EA  L+ +M + PD  +   LL ACR+HGN+ + E+ A+ LI  +  N GTYVL
Sbjct: 488 RAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVL 547

Query: 317 LSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMM 376
           LSNIY+++ NW+   ++R LM E+ ++K PGCS+IE+   VHEF+ GD+ HP+S EIY  
Sbjct: 548 LSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYET 607

Query: 377 LEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKN 436
           L+++   LK+ GYVP    VL D+ EK+K+N L +HSEKLA+AFGL+ST PGT I++VKN
Sbjct: 608 LDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKN 667

Query: 437 LRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LRVC DCH+  K IS+   R+I++RDRNRFHHF  G+CSC D+W
Sbjct: 668 LRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 165/301 (54%), Gaps = 7/301 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y+  G + +AR +FD M  K VV W  MI  YAQ  L +EA+ LFRRM    V+P
Sbjct: 177 TLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKP 236

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE+T V VL+AC +   LE+ + +H YI+ +  I  +  + +AL+++Y KCG    AR +
Sbjct: 237 NEITLVNVLTACARSRDLETAKQVHKYIDET-GIGFHTVLTSALMDVYCKCGCYPLARDL 295

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+++ +K++  WN MI G+      ++AL LFNEM    +K   +T   LL AC H G +
Sbjct: 296 FNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGAL 355

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             G ++ +   ++  IE  V     +V++ ++ G +E A ++  +M  E D + W  L+ 
Sbjct: 356 ELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIV 413

Query: 286 ACRLHGN-IALGEKIAEYLISQNLANSGTY--VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              + G  +   E   E  +S+   ++ T+  VL +  +A + N +G+A   ++  + G+
Sbjct: 414 GLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVN-EGIAYFNSMPNKYGI 472

Query: 343 Q 343
           Q
Sbjct: 473 Q 473



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 48/327 (14%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G +  AR++F+ +        N +I GY    L  +A++ ++ M+ + ++P+  T  ++ 
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            +CG    L  G+ +H +         +  +   L+NMYS CG L  AR VFD++ +K V
Sbjct: 148 KSCG---VLCEGKQLHCH-STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 203

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA------------ 222
           V W +MI  YA      +A++LF  M    +KP++IT + +L+ACA +            
Sbjct: 204 VSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKY 263

Query: 223 -----------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
                                  G     R  FN M      E  +  +  M+N      
Sbjct: 264 IDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMP-----EKNLFCWNIMINGHVEDS 318

Query: 260 QVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYV 315
             EEA  L  +M+   ++ D V   +LL AC   G + LG+ +  Y+  + +  +     
Sbjct: 319 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGT 378

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            L ++YA  G+ +   RV   M EK V
Sbjct: 379 ALVDMYAKCGSIESAMRVFQEMPEKDV 405



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ D+ + T+LVD+YA+ G + SA ++F  MP++ +++ T ++              
Sbjct: 367 KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIV------------- 413

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                             G A  G   +AL LF  M   +V+P+ +T V VL+AC   G 
Sbjct: 414 ------------------GLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 455

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMI 181
           +  G    + + N   I+ +++    +++M  + G + +A  L+ +     D  V   ++
Sbjct: 456 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 515

Query: 182 VGYAMHG 188
               +HG
Sbjct: 516 SACRIHG 522


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 219/469 (46%), Positives = 328/469 (69%), Gaps = 1/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+D+YA  GD+ +A  +F  M  R ++S T ++T +   G+V  AR  FD M E+D
Sbjct: 257 LENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERD 316

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
            V W  MIDGY Q     E L LFR M A  ++P+E T V++L+AC  +GALE G WI +
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI+ +  IK++  VG ALI+MY  CG+++ A  +F+ +  +D + W ++I G A++G+G+
Sbjct: 377 YIDKNE-IKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGE 435

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +AL +F++M +  + P ++T IG+L AC H+G+V++G++FF  M  ++ IEP V HYGCM
Sbjct: 436 EALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCM 495

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG ++EA++++ +M ++P+S++WG+LLGACR+H +  + E  A+ ++     N 
Sbjct: 496 VDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENG 555

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
             YVLL NIYAA   W+ +  VR LM ++G++K PGCS IE++  VHEF+AGD  HP+SK
Sbjct: 556 AVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSK 615

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
           EIY  L+E++  LK  GY P T  V  DIGE++K++++  HSEKLA+AFGLIS+ PG +I
Sbjct: 616 EIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTI 675

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +IVKNLR+C DCH V KL+SK   R++++RDR RFHHF +G+CSC DYW
Sbjct: 676 RIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 3/249 (1%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
             C  + G++  AR++FD M   +   WN MI GY++ G  N A+ ++  ML   V P+E
Sbjct: 60  FCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDE 119

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
            T   +L    +  A++ GR +H +I        NV V  ALI++YS  G +  AR VFD
Sbjct: 120 YTYPFLLKRFTRDTAVKCGRELHDHIVK-LGFSSNVFVQNALIHLYSLSGEVSVARGVFD 178

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
           R +  DVV WN MI GY       ++++LF+EM R+R+ PS IT + +LSAC+    +N 
Sbjct: 179 RSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNV 238

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
           G+R    +KD   IEP       ++++ +  G ++ A  +  +MK   D + W  ++   
Sbjct: 239 GKRVHRYVKD-LKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGF 296

Query: 288 RLHGNIALG 296
              G + L 
Sbjct: 297 TNLGQVGLA 305



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V  +L+D+Y   G+V  A ++F  MP R                             
Sbjct: 386 DSFVGNALIDMYFNCGNVEKAIRIFNAMPHR----------------------------- 416

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
             D + W  +I G A +G   EAL +F +ML   + P+EVT + VL AC   G ++ G+ 
Sbjct: 417 --DKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKK 474

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
             + +     I+ NV     ++++  + G LK+A  V   +  K + +VW S++    +H
Sbjct: 475 FFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVH 534


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/496 (48%), Positives = 333/496 (67%), Gaps = 18/496 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-----RSLVS-----------LT 45
           +KF L  D +V T+L+ +Y   G +  A  LF    +     R+LV              
Sbjct: 144 LKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCN 203

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVE 104
            M+  YA+ G + AAR LFD M ++ VV WNVMI GYAQ+G   EA+ +F RM+    V 
Sbjct: 204 VMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVL 263

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT V+VL A  ++G LE G+W+H Y E ++ I+++  +G+AL++MY+KCGS++ A  
Sbjct: 264 PNRVTLVSVLPAISRLGVLELGKWVHLYAEKNK-IRIDDVLGSALVDMYAKCGSIEKAIQ 322

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+R+   +V+ WN++I G AMHG   D     + M +  + PSD+T+I +LSAC+HAGL
Sbjct: 323 VFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGL 382

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EGR FFN M +   ++PK+EHYGCMV+LL RAG +EEA +L+++M ++PD V+W  LL
Sbjct: 383 VDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALL 442

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GA ++H NI +G + AE L+     +SG YV LSN+YA+ GNWDGVA VR +MK+  ++K
Sbjct: 443 GASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRK 502

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           +PGCS IE+   +HEFL  D  H ++K+I+ MLEEI+  L  EG++P T  VL  + EK 
Sbjct: 503 DPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKH 562

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K++ L  HSEK+AVAFGLIST P T + IVKNLR+C DCH+  KLISK   RKI++RDR 
Sbjct: 563 KESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRK 622

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+CSC DYW
Sbjct: 623 RFHHFEHGSCSCMDYW 638



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 138/285 (48%), Gaps = 51/285 (17%)

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN-EALVLFRRMLAE-KVEPNEVTAVAV 113
           ++  A  +FD + E++   WN +I   A+    + +AL++F +ML+E  VEPN+ T  +V
Sbjct: 64  DIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSV 123

Query: 114 LSACGQIGALESGRWIH------------------------------------------- 130
           L AC  +  L  G+ +H                                           
Sbjct: 124 LKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVD 183

Query: 131 ---SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
              + + + R  + NV +   +++ Y++ G+LK AR +FDR+  + VV WN MI GYA +
Sbjct: 184 DVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQN 243

Query: 188 GFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           GF K+A+++F+ M ++  + P+ +T + +L A +  G++  G ++ +   ++  I     
Sbjct: 244 GFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYAEKNKIRIDDV 302

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
               +V++ ++ G +E+A + V +   + + + W  ++G   +HG
Sbjct: 303 LGSALVDMYAKCGSIEKAIQ-VFERLPQNNVITWNAVIGGLAMHG 346


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 220/435 (50%), Positives = 310/435 (71%), Gaps = 1/435 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K G++  A  LF+ +++K+VV WNVMI GY       EAL LFRRM+   ++PN
Sbjct: 302 LIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIE-NSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +VT +++L AC  +GAL+ G+W+H+Y++ N +++K  V + T+LI+MY+KCG L  A+ +
Sbjct: 362 DVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRI 421

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD +N K +  WN+MI G+AMHG    AL LF+ M      P DITF+G+L+AC HAGL+
Sbjct: 422 FDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLL 481

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + GRR+F++M  +Y + PK+ HYGCM++L  RAG  +EA  LV +M+++PD  +W +LLG
Sbjct: 482 SLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLG 541

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+H  I L E +A++L      N   YVLLSNIYA  G W+ VA++RT + +  ++K 
Sbjct: 542 ACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKV 601

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCSSIE+ + VHEFL GD  HP+S EIY ML+EI+  L+  G+VP T  VL+D+ E+ K
Sbjct: 602 PGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWK 661

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSEKLA+AFGLIST+PGT+I+I+KNLRVC +CH+  KLISK   R+I+ RDRNR
Sbjct: 662 EGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNR 721

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G+CSC DYW
Sbjct: 722 FHHFKDGSCSCKDYW 736



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/431 (31%), Positives = 220/431 (51%), Gaps = 61/431 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ + +V TSL+++YA+ G++++A  +F     R  VS T ++T YA +G +  AR
Sbjct: 155 LKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEAR 214

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD++  +DVV WN MI GYAQ G   EA+  F  M   KV PN  T ++VLSAC Q G
Sbjct: 215 ELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG 274

Query: 122 -ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            +L+ G W+ S+IE+ R +  N+++   LI+MY KCG L++A  +F+++ DK+VV WN M
Sbjct: 275 SSLQLGNWVRSWIED-RGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVM 333

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR-------RFFN 233
           I GY      K+AL LF  M +  + P+D+TF+ +L ACA+ G ++ G+       +   
Sbjct: 334 IGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMK 393

Query: 234 TMKDEYAI-------------------------EPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +MK+  A+                            +  +  M++  +  G  + A  L 
Sbjct: 394 SMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLF 453

Query: 269 MDMKIE---PDSVLWGTLLGACRLHGNIALGEK-----IAEYLISQNLANSGTYVLLSNI 320
             M  E   PD + +  +L AC+  G ++LG +     I +Y +S  L + G  +   ++
Sbjct: 454 SRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMI---DL 510

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPG--CS---------SIELSNKVHEFLAGDLRHPK 369
           +   G +D      TL+K   ++ +    CS          IEL+  V + L      P+
Sbjct: 511 FGRAGLFD---EAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFE--LEPE 565

Query: 370 SKEIYMMLEEI 380
           +   Y++L  I
Sbjct: 566 NPSAYVLLSNI 576



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 155/359 (43%), Gaps = 69/359 (19%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           +  G+++ A  LF  +   + V WN MI G +       AL  +  M++   EPNE T  
Sbjct: 73  SPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFP 132

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--- 168
           ++  +C +I     G+ +H+++     ++ N  V T+LINMY++ G L +ARLVFD+   
Sbjct: 133 SIFKSCTKIRGAHEGKQVHAHVLK-LGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSM 191

Query: 169 ----------------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
                                       +  +DVV WN+MI GYA  G  ++A+  F EM
Sbjct: 192 RDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEM 251

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
            R ++ P+  T + +LSACA +G   +   +  +  ++  +   +     ++++  + G 
Sbjct: 252 RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311

Query: 261 VEEA----------------------------------YKLVMDMKIEPDSVLWGTLLGA 286
           +EEA                                  ++ +M   I+P+ V + ++L A
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPA 371

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVL---LSNIYAAIGNWDGVARVRTLMKEKGV 342
           C   G + LG+ +  Y+     +   T  L   L ++YA  G+     R+   M  K +
Sbjct: 372 CANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSL 430


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/474 (50%), Positives = 326/474 (68%), Gaps = 2/474 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D+    ++++ YA  G +  A++LF  MP+R+LVS  +ML  + K G V  A  LF +M
Sbjct: 290 RDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEM 349

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             +DVV WN M+  YAQ G  NEAL LF +M A  V+P E T V++LSAC  +GAL+ G 
Sbjct: 350 PCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL 409

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H+YI ++R I+VN  VGTAL++MY+KCG +  A  VF+ +  KDV+ WN++I G A+H
Sbjct: 410 HLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 468

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  K+A QLF EM    ++P+DITF+ +LSAC+HAG+V+EG++  + M   Y IEPKVEH
Sbjct: 469 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 528

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGC+++LL+RAG +EEA +L+  M +EP+    G LLG CR+HGN  LGE + + LI+  
Sbjct: 529 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 588

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +SG Y+LLSNIYAA   WD   +VR LMK  G+ K PG S IEL   VH F+AGD  H
Sbjct: 589 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 648

Query: 368 PKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           P+S +IY  L EI+  LK A GY   T  VL D+ E+ K+++L VHSEKLA+A+GL+   
Sbjct: 649 PESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLD 708

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              +I+IVKNLRVC DCH V KLISK  GR+I++RDRNRFHHF +G CSC D+W
Sbjct: 709 SKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           +A A+ +F  ++      +N +I   +      EAL L+  ML   ++P+ +T   V+ A
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 204

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           C +      G  +H+++  S   + +  + ++LI++Y+    L  A+ +F+  + +DVV 
Sbjct: 205 CNESSVTWFGLLVHTHVVKS-GFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVS 263

Query: 177 WNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
           WN+MI GY  H     A  +F+ M CR       I++  +++  A  G ++E +R F+ M
Sbjct: 264 WNAMIDGYVKHVEMGHARMVFDRMVCR-----DVISWNTMINGYAIVGKIDEAKRLFDEM 318

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
            +   +      +  M+    + G VE+A+ L  +M    D V W ++L AC
Sbjct: 319 PERNLVS-----WNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSML-AC 363


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/477 (46%), Positives = 331/477 (69%), Gaps = 1/477 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           +S + D+    +++D Y + G + +A+ LFA MP +++ S   M+   AK G +  AR L
Sbjct: 191 YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKL 250

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           FD+M E+D + W+ M+DGY   G   EAL +F++M  E+  P      +VL+AC  IGA+
Sbjct: 251 FDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAI 310

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + GRW+H+Y++ + +IK++  +GTAL++MY+KCG L     VF+ + ++++  WN+MI G
Sbjct: 311 DQGRWVHAYLKRN-SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
            A+HG  +DAL+LF+++   R+KP+ IT +G+L+ACAHAG V++G R F TM++ Y ++P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
           ++EHYGCMV+LL R+G   EA  L+  M ++P++ +WG LLGACR+HGN  L E++ + L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
           +     NSG YVLLSNIYA +G +D V+++R LMK++G++  PG S ++L+  VHEF  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP+ KEIY  L+ I   L+  G+ P T  VL DI E++K+ ++  HSEKLA+AFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +T PG  I IVKNLRVC DCH+  KLIS+   R+I++RDR R+HHF NGTCSC D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 22/305 (7%)

Query: 46  TMLTCYAKQ--GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +L CYA         A  +F  +   +V  WN++I G  ++    +A+  + RM+ +  
Sbjct: 70  ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-A 128

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN+ T   +  AC    A++ GR IH ++     I  +V + +A I+MY+  G L+DAR
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVK-HGIGSDVHIKSAGIHMYASFGRLEDAR 187

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F    + DVV WN+MI GY   G  + A  LF +M    +   ++   GL    A  G
Sbjct: 188 KMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL----AKGG 242

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLW 280
            + + R+ F+ M +   I      +  MV+    AG+ +EA ++   M+ E   P   + 
Sbjct: 243 NLGDARKLFDEMSERDEIS-----WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFIL 297

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL---ANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            ++L AC   G I  G  +  YL   ++   A  GT +L  ++YA  G  D    V   M
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL--DMYAKCGRLDMGWEVFEEM 355

Query: 338 KEKGV 342
           KE+ +
Sbjct: 356 KEREI 360


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 222/477 (46%), Positives = 330/477 (69%), Gaps = 1/477 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           +S + D+    +++D Y + G + +A+ LFA MP +++ S   M+   AK G +  AR L
Sbjct: 191 YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKL 250

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           FD+M E+D + W+ M+DGY   G   EAL +F++M  E+  P      +VL+AC  IGA+
Sbjct: 251 FDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAI 310

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + GRW+H+Y++ + +IK++  +GTAL++MY+KCG L     VF+ + ++++  WN+MI G
Sbjct: 311 DQGRWVHAYLKRN-SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
            A+HG  +DAL+LF+++   R+KP+ IT +G+L+ACAHAG V++G R F TM++ Y ++P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
           ++EHYGCMV+LL R+G   EA  L+  M ++P++ +WG LLGACR+HGN  L E++ + L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
           +     NSG YVLLSNIYA +G +D V+++R LMK +G++  PG S ++L+  VHEF  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP+ KEIY  L+ I   L+  G+ P T  VL DI E++K+ ++  HSEKLA+AFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +T PG  I IVKNLRVC DCH+  KLIS+   R+I++RDR R+HHF NGTCSC D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 142/305 (46%), Gaps = 22/305 (7%)

Query: 46  TMLTCYAKQ--GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +L CYA         A  +F  +   +V  WN++I G  ++    +A+  + RM+ +  
Sbjct: 70  ALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-A 128

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN+ T   +  AC    A++ GR IH ++     I  +V + +A I MY+  G L+DAR
Sbjct: 129 RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVK-HGIGSDVHIKSAGIQMYASFGRLEDAR 187

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F    + DVV WN+MI GY   G  + A  LF +M    +   ++   GL    A  G
Sbjct: 188 KMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGL----AKGG 242

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLW 280
            + + R+ F+ M +   I      +  MV+    AG+ +EA ++   M+ E   P   + 
Sbjct: 243 NLGDARKLFDEMSERDEIS-----WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFIL 297

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL---ANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            ++L AC   G I  G  +  YL   ++   A  GT +L  ++YA  G  D    V   M
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL--DMYAKCGRLDMGWEVFEEM 355

Query: 338 KEKGV 342
           KE+ +
Sbjct: 356 KEREI 360


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/473 (47%), Positives = 323/473 (68%), Gaps = 1/473 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D+++   ++  Y   G+V  A K+F  M  R LVS  TM+  YA +G+V  AR +FD  
Sbjct: 114 RDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGT 173

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            ++D   W+ MI  YA+   + EAL L+R M    V P+ ++ V+VLSAC  +GAL  G 
Sbjct: 174 RDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGA 233

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H ++E++R ++V++++GTAL++MY+KCG ++++  VF  +  KDV+ W+SMI+G A H
Sbjct: 234 EVHRFVESNR-VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANH 292

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G G DAL LF+EM    L+P++ITFIG+L AC H GLVN+G+++F++M D + + P++EH
Sbjct: 293 GLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEH 352

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGCMV+LL RAG VEEA +L+  M  +PD ++W TLLGACR+H N+ + E+    L   +
Sbjct: 353 YGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLD 412

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
               G YVLLSNIYA   +W+GVA +R  ++ + +Q+ PG SSIE  N VHEF++GD  H
Sbjct: 413 PLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSH 472

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+ +EIY MLEE+   L+  GY P T +VL DI E+ K+ +L  HSEKLA+AFGL+ T  
Sbjct: 473 PRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPA 532

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ++++I KNLR C DCH+  KLIS    RK+++RDRNRFHHF  G CSC DYW
Sbjct: 533 RSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 15/223 (6%)

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSK--CGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           G  +H+    S     ++ V TAL+ MY+K   G +  AR  FD    +DV + N M+  
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
           Y   G   +A ++F+ M    L    +++  ++   A  G V   R  F+  +D  A   
Sbjct: 126 YVARGEVAEARKVFDGMSGRDL----VSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFS- 180

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIA 300
               +  M++  ++    +EA +L  +M+   + PD +   ++L AC   G +A+G ++ 
Sbjct: 181 ----WSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVH 236

Query: 301 EYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            ++ S  +  +      L ++YA  G+ +   +V   M  K V
Sbjct: 237 RFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDV 279


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/437 (50%), Positives = 305/437 (69%), Gaps = 1/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y K GE   AR LFD +EEKDV+ WN MI GY+   L  EAL LF  ML   V+
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN+VT + +L AC  +GAL+ G+W+H+YI+ +     N  + T+LI+MY+KCG ++ A  
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAG 223
           VF  ++ +++  WN+M+ G+AMHG  + AL LF+EM    L +P DITF+G+LSAC  AG
Sbjct: 422 VFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG 481

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+ G ++F +M  +Y I PK++HYGCM++LL+RA + EEA  L+ +M++EPD  +WG+L
Sbjct: 482 LVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSL 541

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L AC+ HG +  GE +AE L      N+G +VLLSNIYA  G WD VAR+RT + +KG++
Sbjct: 542 LSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMK 601

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGC+SIE+   VHEFL GD  HP+   IY ML E++  L+  G+VP T  VL+D+ E+
Sbjct: 602 KVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEE 661

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+ +L  HSEKLA++FGLI T+PGT+I+IVKNLRVC +CH+  KLISK   R+I+ RDR
Sbjct: 662 WKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 721

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G CSC D W
Sbjct: 722 NRFHHFKDGFCSCNDCW 738



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 162/292 (55%), Gaps = 2/292 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K +L  + +V TS++ +YA  G++  A  +F     R  VS T ++T Y  QG +  A
Sbjct: 157 ALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDA 216

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R LFD++  KDVV WN MI GY Q G   EA+V F  M    V PN+ T V VLSACG  
Sbjct: 217 RRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHT 276

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            + E G+WI S++ ++     N+Q+  ALI+MY KCG    AR +FD + +KDV+ WN+M
Sbjct: 277 RSGELGKWIGSWVRDN-GFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTM 335

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GY+     ++AL LF  M R  +KP+D+TF+G+L ACA  G ++ G+     +     
Sbjct: 336 IGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLR 395

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
                  +  ++++ ++ G +E A ++   M    +   W  +L    +HG+
Sbjct: 396 NSSNASLWTSLIDMYAKCGCIEAAERVFRSMH-SRNLASWNAMLSGFAMHGH 446



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 153/360 (42%), Gaps = 70/360 (19%)

Query: 52  AKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV 108
           +  G+++ A  LF++ ++    +V  WN +I GY+       +L LF RML   V+PN  
Sbjct: 73  SPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSH 132

Query: 109 TAVAVLSACGQIGALESGRWIHSYI----------ENSRNIKVNVQVG------------ 146
           T   +  +C +  A   G+ +H++            ++  I +   VG            
Sbjct: 133 TFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKS 192

Query: 147 --------TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
                   TALI  Y   G L DAR +FD +  KDVV WN+MI GY   G  ++A+  F 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEY---- 239
           EM    + P+  T + +LSAC H      G+               +  N + D Y    
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCG 312

Query: 240 ----------AIEPK-VEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLG 285
                      IE K V  +  M+   S     EEA   +++++   ++P+ V +  +L 
Sbjct: 313 ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILH 372

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVL---LSNIYAAIGNWDGVARVRTLMKEKGV 342
           AC   G + LG+ +  Y I +NL NS    L   L ++YA  G  +   RV   M  + +
Sbjct: 373 ACACLGALDLGKWVHAY-IDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 11/177 (6%)

Query: 113 VLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD---R 168
           +L  C  I   +    IHS I +   N  V VQ         S  G L  A  +F+   +
Sbjct: 34  LLEKCKNINTFKQ---IHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQ 90

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
            +  +V +WNS+I GY++      +L LF+ M    ++P+  TF  L  +C  A   +EG
Sbjct: 91  HHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEG 150

Query: 229 RRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++   + +K      P V  +  ++++ +  G+++ A +LV D     D+V +  L+
Sbjct: 151 KQLHAHALKLALHFNPHV--HTSVIHMYASVGEMDFA-RLVFDKSSLRDAVSFTALI 204


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/475 (47%), Positives = 320/475 (67%), Gaps = 4/475 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L V  + +D++ + G+V  A  LF  M +R +VS TT++  YAK  E   AR +FD M 
Sbjct: 377 NLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMP 436

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACGQIGALESG 126
            KD+  WNV+I GY Q G   EAL +FR +   K    P++VT ++ LSAC Q+GA++ G
Sbjct: 437 RKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIG 496

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
            WIH YI+  R I++N  + T+LI+MYSK G ++ A  VF  + +KDV VW++MI G AM
Sbjct: 497 EWIHGYIKKER-IQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAM 555

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G+ A++LF +M   ++KP+ +TF  LL AC+H+GLV+EG+R F+ M+  Y + PK +
Sbjct: 556 HGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTK 615

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CMV++L RAG +EEA K +  M + P + +WG LLGAC +HGN+ L EK    L+  
Sbjct: 616 HYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEI 675

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              N G YVLLSN+YA  G+W+GV+ +R  M++ G++KE GCSSIE+   VHEF+ GD  
Sbjct: 676 EPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNA 735

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLIST 425
           HP S++IY  L+EI   L++ GYV  T  +L  + E++ K+ +L++HSEK+A+AFGLI  
Sbjct: 736 HPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRA 795

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I+IVKNLRVC DCH V K++SK  GR I++RDR RFHHF  G CSC DYW
Sbjct: 796 DSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 45/313 (14%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           L +++  YA  G +  A ++F+ +E   KD+V WN M+ G+ Q G  ++AL LF RM  E
Sbjct: 278 LNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNE 337

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V PN VT V+V+SAC +   L  GR +  YI+ +  + +N+ V  A I+M+ KCG ++ 
Sbjct: 338 GVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNE-MMMNLNVCNATIDMFVKCGEVEI 396

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAM---HGFGKD-------------------------- 192
           AR +FD +  +DVV W ++I GYA    HG  +D                          
Sbjct: 397 ARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRP 456

Query: 193 --ALQLFNE--MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             AL +F E  + +   +P  +T +  LSACA  G ++ G      +K E  I+      
Sbjct: 457 KEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE-RIQLNRNLA 515

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI---- 304
             ++++ S++G VE+A ++   +    D  +W  ++    +HG    GE   E  +    
Sbjct: 516 TSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAMHGR---GEAAIELFLDMQE 571

Query: 305 SQNLANSGTYVLL 317
           +Q   NS T+  L
Sbjct: 572 TQVKPNSVTFTNL 584



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACG 118
           AR +FD + + ++  WN++I   A      +++++F RML +    PN+ T   ++ A  
Sbjct: 192 ARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVA 251

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVV 176
           +      G+ +H     + +   +V V  +LI+ Y+ CG L  A LVF+ +  N+KD+V 
Sbjct: 252 ERRCFLVGKAVHGMAIKT-SFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVS 310

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WNSM+ G+   G+   AL LF  M    + P+ +T + ++SACA    +  GR+  + + 
Sbjct: 311 WNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYI- 369

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           D   +   +      +++  + G+VE A  L  +M+ + D V W T++
Sbjct: 370 DRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTII 416


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/503 (46%), Positives = 327/503 (65%), Gaps = 32/503 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL+V T+LV+ YA+ G    A   F   P+R +     ML  Y  +GEVA AR +FD M 
Sbjct: 74  DLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMR 133

Query: 69  EKDVVCWNVMIDGYAQHG---LANE----------------------------ALVLFRR 97
           E+D+V WN MI GYA +G   LA E                            AL L+R 
Sbjct: 134 ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWRE 193

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M A  V P+  T V+VLSAC  +GAL  G  +H ++E S  ++++V++GTALI+MY+KCG
Sbjct: 194 MRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVE-SNGVELDVKLGTALIDMYAKCG 252

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++++  VF  +  KDV+ W+SMI+G A HGFG DAL LF+ M    L+P+++TFIG+L 
Sbjct: 253 DIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLI 312

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           +C H GLV++G+++F++M   + + PKV+HYGCMV+LL R+G +EEA +L+ DM  EPD+
Sbjct: 313 SCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDA 372

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
           V+W  LLGACR++ N+ + E+    L   +    G YVLLSNIYA   +W+GVA +R  +
Sbjct: 373 VIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTL 432

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           + + +Q+ PG SSIE  N +HEF++GD  HP+SKEIY ML E+   L+  GY P T +VL
Sbjct: 433 RRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVL 492

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
            DI E+ K+ +L  HSEKLAVAFGL++T  G++++I KNLR C DCH+  KLI+    RK
Sbjct: 493 QDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERK 552

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           +++RDRNRFHHF  G CSC DYW
Sbjct: 553 LIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 19/221 (8%)

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H+    S     ++ V TAL+  Y+K G    AR  FD    +DV + N M+  Y   G
Sbjct: 61  LHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRG 120

Query: 189 FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
              +A ++F+ M     +  D +++  ++   A  G V+  R  FN M D  A       
Sbjct: 121 EVAEARRVFDGM-----RERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFS----- 170

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  M++  ++  + ++A +L  +M+   + PD     ++L AC   G +A+G ++ +++ 
Sbjct: 171 WSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVE 230

Query: 305 SQNL---ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           S  +      GT ++  ++YA  G+ +   RV   M  K V
Sbjct: 231 SNGVELDVKLGTALI--DMYAKCGDIENSVRVFHSMPVKDV 269


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/474 (48%), Positives = 319/474 (67%), Gaps = 3/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL +  +++D+Y + G V  A+KLF  MP+R + S T ML  YAK G+  AAR++F+ M 
Sbjct: 261 DLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMP 320

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNEVTAVAVLSACGQIGALESGR 127
            K++  WNV+I  Y Q+G   EAL +F  +   K+ +P+EVT V+ LSAC Q+GA++ G 
Sbjct: 321 VKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGG 380

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           WIH YI+    I +N  + ++L++MY+KCGSL+ A  VF  V ++DV VW++MI G  MH
Sbjct: 381 WIHVYIKR-EGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMH 439

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G GK A+ LF EM   ++KP+ +TF  +L AC+HAGLV+EGR FF+ M+  Y + P+++H
Sbjct: 440 GRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKH 499

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV++L RAG +EEA +L+ +M   P + +WG LLGAC LH N+ LGE  ++ L+   
Sbjct: 500 YACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLE 559

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             N G  VLLSNIYA  G W+ V+ +R LM++  ++KEPGCSSIE +  VHEFL GD  H
Sbjct: 560 PRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTH 619

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQ 426
           P S  IY  LEEI   LK+ GY P    +L  I E   K+ +L +HSEKLA+AFGL++  
Sbjct: 620 PLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLA 679

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           P   I++VKNLR+C DCHA  KL+S+   R I++RDR RFHHF +G CSC DYW
Sbjct: 680 PSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 153/323 (47%), Gaps = 66/323 (20%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K S   DLY+  SLV  Y   GD+  AE+L                            
Sbjct: 152 AIKLSFGMDLYILNSLVRFYGACGDLSMAERL---------------------------- 183

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              F  +  KDVV WN MI  +AQ     +AL LF +M  E V PN VT V VLSAC + 
Sbjct: 184 ---FKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKK 240

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             LE GRW+ SYIE  + IKV++ +  A+++MY+KCGS+ DA+ +FD + ++DV  W  M
Sbjct: 241 LDLEFGRWVCSYIER-KGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIM 299

Query: 181 IVGYA-------------------------------MHGFGKDALQLFNEMCRIRL-KPS 208
           + GYA                                +G  K+AL +FNE+   ++ KP 
Sbjct: 300 LDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPD 359

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           ++T +  LSACA  G ++ G      +K E  I         +V++ ++ G +E+A ++ 
Sbjct: 360 EVTLVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMYAKCGSLEKALEVF 418

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
             ++ E D  +W  ++    +HG
Sbjct: 419 YSVE-ERDVYVWSAMIAGLGMHG 440



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 131/262 (50%), Gaps = 19/262 (7%)

Query: 25  DVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           D  SA KLF      +L S +T+            AR LFD + + ++  WN +I  YA 
Sbjct: 56  DPFSASKLFTA---SALSSFSTL----------DYARNLFDQIPQPNLYTWNTLIRAYAS 102

Query: 85  HGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                ++ V+F  +L +K E  PN+ T   V+ A  ++ A   G  +H  +    +  ++
Sbjct: 103 SSDPFQSFVIFLDLL-DKCEDLPNKFTFPFVIKAASELKASRVGTAVHG-MAIKLSFGMD 160

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           + +  +L+  Y  CG L  A  +F  ++ KDVV WNSMI  +A     +DAL+LF +M R
Sbjct: 161 LYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMER 220

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             + P+ +T +G+LSACA   L  E  R+  +  +   I+  +     M+++ ++ G V+
Sbjct: 221 ENVMPNSVTMVGVLSACAKK-LDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279

Query: 263 EAYKLVMDMKIEPDSVLWGTLL 284
           +A KL  +M  E D   W  +L
Sbjct: 280 DAQKLFDEMP-ERDVFSWTIML 300


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/437 (50%), Positives = 307/437 (70%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++  YAK GE+  AR LFD M+ +DVV W+ MI GY Q     EAL LF  M   +V
Sbjct: 259 VTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARV 318

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EPN+VT V+VLSAC  +GALE+G+W+HSY+   R + +   +GTAL++ Y+KCG + DA 
Sbjct: 319 EPNDVTMVSVLSACAVLGALETGKWVHSYVRRKR-LSLTTILGTALVDFYAKCGCIDDAV 377

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             F+ +  K+   W ++I G A +G G++AL+LF+ M    ++P+D+TFIG+L AC+H+ 
Sbjct: 378 EAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSC 437

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EGRR F++M  +Y I+P+VEHYGCMV+LL RAG V+EAY+ +  M IEP++V+W  L
Sbjct: 438 LVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRAL 497

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L +C +H N+ +GE+  + +IS N ++SG YVLLSNIYA+ G W   A VR  MK++G++
Sbjct: 498 LSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIE 557

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS IEL   V EF A D  HP+ +EIY  +EE+ G +K  GYVP T  V  ++ E+
Sbjct: 558 KTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEER 617

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ S+  HSEKLA+AFGL+   PG +I++ KNLRVC DCH+  KLISK   R+I++RDR
Sbjct: 618 EKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDR 677

Query: 464 NRFHHFVNGTCSCGDYW 480
           N FHHF +GTCSC DYW
Sbjct: 678 NIFHHFKDGTCSCNDYW 694



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 159/287 (55%), Gaps = 38/287 (13%)

Query: 38  QRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
           +R LV+    L++++  YA  G+VAAAR++FD  EE  VV WN ++  Y ++G   E + 
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           +F+ ML   V  +EVT V+V++ACG+IG  + G+W+  +++    +  N ++ TAL++MY
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDE-EGLARNPKLVTALMDMY 266

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +KCG +  AR +FD +  +DVV W++MI GY      ++AL LF+EM   R++P+D+T +
Sbjct: 267 AKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMV 326

Query: 214 GLLSACAHAGLVNEGRRFFNTMK---------------DEYA----IEPKVEHYGCM--- 251
            +LSACA  G +  G+   + ++               D YA    I+  VE +  M   
Sbjct: 327 SVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVK 386

Query: 252 --------VNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGAC 287
                   +  ++  G+  EA +L   M+   IEP  V +  +L AC
Sbjct: 387 NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMAC 433


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/437 (49%), Positives = 308/437 (70%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++  YAK GE+  AR LFD M+ +DVV W+ MI GY Q     EAL LF  M   +V
Sbjct: 258 MTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEV 317

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EPN+VT V+VLSAC  +GALE+G+W+HSYI   R + + + +GTAL++ Y+KCG + DA 
Sbjct: 318 EPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR-LSLTIILGTALVDFYAKCGCIDDAV 376

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             F+ +  K+   W ++I G A +G G++AL+LF+ M +  ++P+D+TFIG+L AC+H+ 
Sbjct: 377 EAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSC 436

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EGRR F++M  +Y I+P+ EHYGC+V+LL RAG ++EAY+ +  M IEP++V+W  L
Sbjct: 437 LVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRAL 496

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L +C +H N+ +GE+  + ++S N ++SG Y+LLSNIYA++G W   A +R  MK++G++
Sbjct: 497 LSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIE 556

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS IEL   V EF A D  HP+ KEIY  +EE+   +K  GY+P T  V  ++ E 
Sbjct: 557 KTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEH 616

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ S+  HSEKLA+AFGL+   PG +I++ KNLRVC DCH+  KLISK   R+I++RDR
Sbjct: 617 EKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDR 676

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +GTCSC DYW
Sbjct: 677 NRFHHFKDGTCSCNDYW 693



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 146/241 (60%), Gaps = 3/241 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L++++  YA   +VAAA++LFD +EE  VV WN +I  Y ++G   E + +F+ ML   V
Sbjct: 157 LSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGV 216

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +E+T V+V++ACG+IG  + G+W+  Y++    ++ N  + TALI+MY+KCG L  AR
Sbjct: 217 AFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR-NRNLMTALIDMYAKCGELGKAR 275

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD +  +DVV W++MI GY      ++AL LF+EM    ++P+D+T + +LSACA  G
Sbjct: 276 RLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLG 335

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G+   + ++ +  +   +     +V+  ++ G +++A +    M ++ +S  W  L
Sbjct: 336 ALETGKWVHSYIRRKR-LSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTAL 393

Query: 284 L 284
           +
Sbjct: 394 I 394



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 136/297 (45%), Gaps = 50/297 (16%)

Query: 74  CWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
           C+NV++      G   +AL LF  ML    V P++ T    L +C ++  L+ GR I +Y
Sbjct: 85  CYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAY 144

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
               R +  +  V ++LI+MY+ C  +  A+L+FD V +  VV+WN++I  Y  +G   +
Sbjct: 145 AVK-RGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWME 203

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSAC--------------------------------- 219
            +++F  M  + +   +IT + +++AC                                 
Sbjct: 204 VVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALID 263

Query: 220 --AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IE 274
             A  G + + RR F+ M+        V  +  M++  ++A Q  EA  L  +M+   +E
Sbjct: 264 MYAKCGELGKARRLFDGMQSR-----DVVAWSAMISGYTQADQCREALALFSEMQLAEVE 318

Query: 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL---LSNIYAAIGNWD 328
           P+ V   ++L AC + G +  G+ +  Y+  + L  S T +L   L + YA  G  D
Sbjct: 319 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKRL--SLTIILGTALVDFYAKCGCID 373


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/482 (47%), Positives = 320/482 (66%), Gaps = 3/482 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARG-GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
            VK  LD+ + VS +L+ ++A   G +     L  T       +  T++T YA+ G +A 
Sbjct: 102 AVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLAD 161

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LFD+M  ++ V W+ M++GY Q G   EAL +F RM AE V P++   V VL+AC Q
Sbjct: 162 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQ 221

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
            GALE G+W+H Y++ +  IK+N+  GTAL++MYSKCG ++ A  VF+R+  K+V+ W +
Sbjct: 222 HGALEQGKWVHGYLK-AHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G AMHG G +A+ LF +M    ++P DI FIG+L AC HAGLV++GR  F++M  +Y
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKY 340

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGCMV+LL+R G + EA +++  M +EPD+++WG L+  CR H N+   E +
Sbjct: 341 GIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYV 400

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A++ I      SG YVLLSNIYAA G       +R LM+EKGV K PGCS++E++  +H+
Sbjct: 401 AKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQ 460

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           F+ GDL HP+ K+I     EI+  ++  EGY+P  + VL DI E++K+ +L  HSEKLA+
Sbjct: 461 FIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAI 520

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AF LIS      I+I KNLRVC DCH V KLISK  GR+I++RDR RFH F  GTCSC D
Sbjct: 521 AFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKD 580

Query: 479 YW 480
           YW
Sbjct: 581 YW 582


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/542 (42%), Positives = 341/542 (62%), Gaps = 64/542 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLV------------------- 42
           +K   + D+ + T L+D YA+ GD+  A+++F  MP+R +V                   
Sbjct: 37  MKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEAR 96

Query: 43  ------------SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA------- 83
                       S  +M+TCY K G++ +AR++FD    KDVV WN +IDGY        
Sbjct: 97  NLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVA 156

Query: 84  -------------------------QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
                                    Q G    A+ +F++M +E V+P EVT V++LSAC 
Sbjct: 157 AQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACA 216

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +GAL+ G WIH YI   R +K++V +G ALI+MY KCG+L+ A  VF  ++ K++  WN
Sbjct: 217 HLGALDMGEWIHGYIRTKR-LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 275

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           S+IVG  M+G G++A+  F  M +  +KP  +TF+G+LS C+H+GL++ G+R+F+ M   
Sbjct: 276 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 335

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           Y +EP VEHYGCMV+LL RAG ++EA +L+  M ++P+S++ G+LL AC++H +  LGE+
Sbjct: 336 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 395

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           + + L+  +  + G YV LSN+YA++  WD V   R LM ++GV K PGCSSIE++N VH
Sbjct: 396 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 455

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           EF+AGD  HP+  +I   L+EI   LK +G+VP T  VLHDI E++K+ ++  HSE++AV
Sbjct: 456 EFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAV 515

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGL+ST PG +I++VKNLR C DCH+  KLIS    R+I++RDR RFHHF NG+CSC D
Sbjct: 516 AFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCND 575

Query: 479 YW 480
           YW
Sbjct: 576 YW 577


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/465 (47%), Positives = 324/465 (69%), Gaps = 1/465 (0%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           L++   + GD+  A  LF  MP+R+  S  +++  + + G++  AR LF  M EK+VV W
Sbjct: 214 LINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSW 273

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
             MI+G++Q+G   +AL +F RML E V PN++T V+ L AC +IGAL+ G  IH+Y+ +
Sbjct: 274 TTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYL-S 332

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           S   ++N  +GTAL++MY+KCG++K A  VF     KD++ W+ MI G+A+HG    ALQ
Sbjct: 333 SNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQ 392

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            F +M    + P ++ F+ +L+AC+H+G V++G  FF +M+ +Y+IEP ++HY  +V+LL
Sbjct: 393 CFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLL 452

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            RAG+++EA   +  M I PD V+WG L  ACR H NI + E  AE L+     + G+YV
Sbjct: 453 GRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYV 512

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYM 375
            LSN+YAA+G W+ V RVRTLMK +GV+K+PG S IE+  +VH F+AGD  H +++EI +
Sbjct: 513 FLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISL 572

Query: 376 MLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVK 435
            LEEI    K EGY+P+T  VLH+I E++K+++L  HSEKLA+AFGLIST PG++I+IVK
Sbjct: 573 KLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVK 632

Query: 436 NLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           NLRVC DCH++ K  SK + R+I++RD  RFHHF +GTCSCGDYW
Sbjct: 633 NLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/314 (18%), Positives = 124/314 (39%), Gaps = 69/314 (21%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T +++       +  A  +F   +  ++  +N +I G A++     ++  F  ML   +
Sbjct: 75  VTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSI 134

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIH-----------SYIENS---------------- 136
            P+ +T   VL +   +  +  GR +H           S++  S                
Sbjct: 135 RPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQ 194

Query: 137 -------RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA---- 185
                  RN   ++ +   LIN   K G L  A  +F+ + +++   WNS+I G+     
Sbjct: 195 LFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGD 254

Query: 186 ----------------------MHGFGKD-----ALQLFNEMCRIRLKPSDITFIGLLSA 218
                                 ++GF ++     AL +F  M    ++P+D+T +  L A
Sbjct: 255 LDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLA 314

Query: 219 CAHAGLVNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           C   G +  G R  N +    + +   +     +V++ ++ G ++ A ++ ++ K + D 
Sbjct: 315 CTKIGALQVGERIHNYLSSNGFQLNRGIG--TALVDMYAKCGNIKSASRVFVETKGK-DL 371

Query: 278 VLWGTLLGACRLHG 291
           + W  ++    +HG
Sbjct: 372 LTWSVMIWGWAIHG 385



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 38/239 (15%)

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           Q+  + +  ++H+   NSR       V T LI+      SL  A  +F   +  ++ V+N
Sbjct: 55  QLHQIHAQIFLHNLFSNSR-------VVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFN 107

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA-----------CAHAGLVNE 227
           ++I G A +   + ++  F  M R+ ++P  +T   +L +           C H G++  
Sbjct: 108 ALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKL 167

Query: 228 GRRFFN----TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           G  F +    ++ D Y    K+   G  + L   + Q  +A  +          +LW  L
Sbjct: 168 GLEFDSFVRVSLVDMYV---KIGELGFGLQLFDESPQRNKAESI----------LLWNVL 214

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +  C   G+++    + E +  +   N+G++  L N +   G+ D    +   M EK V
Sbjct: 215 INGCCKVGDLSKAASLFEAMPER---NAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/472 (48%), Positives = 318/472 (67%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL V  +LVD+YA   D+ SA KLF  M  RS+VS T++L+   + G V  AR LF  M 
Sbjct: 179 DLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMP 238

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+D V W  MIDGY Q     EAL +FR M    V  +E T V+V++AC Q+GALE G W
Sbjct: 239 ERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEW 298

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +  Y+ + + IK++  VG ALI+MYSKCGS++ A  VF  ++ +D   W ++I+G A++G
Sbjct: 299 VRVYM-SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNG 357

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           +G++A+++F+ M  +   P ++TFIG+L+AC HAGLV++GR FF +M++ Y I P V HY
Sbjct: 358 YGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHY 417

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GC+++L  RAG++ EA   +  M + P+S +WGTLL ACR+HGN  +GE + E L+  + 
Sbjct: 418 GCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDP 477

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NS  Y LLSNIYA    W+ V R+R  + EKG++KEPGCS IE++  +HEF+AGD  HP
Sbjct: 478 ENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHP 537

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            SKEIY  LE I   L   GY P    V  ++ E++KQ  L  HSEKLA+AF L+S++P 
Sbjct: 538 MSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPN 597

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T I+IVKNLR+C DCH   KLIS+  GR++++RDR RFHHF +G CSC DYW
Sbjct: 598 TVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 39/312 (12%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAARVLF 64
           D Y    L+   ARG        + A + +    R+    T+++T YA  G+ AAAR L 
Sbjct: 42  DAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALL 101

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ-IGAL 123
            + E    V WN +I G+ +     EA   F  M      P  VT V+VLSACG+  G +
Sbjct: 102 SERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDV 161

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKC--------------------------- 156
             G  +H  +  S  +  +++V  AL++MY++C                           
Sbjct: 162 LLGMQVHGRVVGS-GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSG 220

Query: 157 ----GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
               G + +AR +F R+ ++D V W +MI GY      ++AL++F EM    +   + T 
Sbjct: 221 LTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTM 280

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +++ACA  G +  G  +         I+        ++++ S+ G +E A  +  DM 
Sbjct: 281 VSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMH 339

Query: 273 IEPDSVLWGTLL 284
              D   W  ++
Sbjct: 340 -HRDKFTWTAII 350



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 40/291 (13%)

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           +A+  + RMLA    P+  T   +L A  +  +    R +H+++     +  N  V T+L
Sbjct: 26  DAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKF-GMGRNAHVATSL 84

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +  Y+  G    AR +         VVWN++I G+       +A   F +M R    P+ 
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 210 ITFIGLLSACA------------HAGLVNEG----RRFFNTMKDEYAIEPKVE------- 246
           +T++ +LSAC             H  +V  G     R  N + D YA    +E       
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 247 --------HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG----ACRLHGNIA 294
                    +  +++ L+R G+V+EA  L   M  E D+V W  ++     A R    + 
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMP-ERDTVSWTAMIDGYVQAARFREAL- 262

Query: 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
             E   E   S   A+  T V +    A +G  +    VR  M  +G++ +
Sbjct: 263 --EMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMD 311


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/478 (47%), Positives = 324/478 (67%), Gaps = 1/478 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K     +LY+   +V LYA  G++  A  LF  MPQR +V+   M+    KQG+   A  
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF  M E++V  W  MI GY Q G A EA+ LF +M    V+ NEVT VAVL+AC  +GA
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G  IH Y  N    K NV++   LI+MY KCG L++A  VF+ + ++ VV W++MI 
Sbjct: 276 LDLGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G AMHG  ++AL+LF++M ++ ++P+ +TFIGLL AC+H GL++EGRRFF +M  +Y I 
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P++EHYGCMV+LLSRAG + EA++ +++M ++P+ V+WG LLGACR+H N+ + E+  ++
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L+  +  N G YV+LSNIYA  G W+  ARVR  MK++ V+K PG SSI +   VHEF+A
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           G+  HP +++I+   EE+   ++ +GYVP T +VL DI E +K   +  HSEKLA+ FGL
Sbjct: 515 GEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGL 574

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++T   T I+I+KNLR+C DCH+ FKLIS    R+I++RDRNRFH F + +CSC DYW
Sbjct: 575 MNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 139/294 (47%), Gaps = 36/294 (12%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK--DVVCWNVMIDGYAQHGLA 88
           ++  T    S++ LT +    A       A+ +F  +E++  +   WN  +   A+    
Sbjct: 50  QIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSP 109

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            +A++LF R+    V P+  T  +VL AC  +  L +GR +H  +E     + N+ +   
Sbjct: 110 IDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKV-GFRSNLYLQNM 168

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWN------------------------------ 178
           ++++Y+ CG + +ARL+F+++  +DVV WN                              
Sbjct: 169 IVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSW 228

Query: 179 -SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            SMI GY   G  K+A+ LF +M    +K +++T + +L+ACA  G ++ G R  +   +
Sbjct: 229 TSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSN 287

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  +  V     ++++  + G +EEA K+  +M+ E   V W  ++G   +HG
Sbjct: 288 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHG 340


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/482 (48%), Positives = 334/482 (69%), Gaps = 3/482 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAA 59
            VK  L  D +V ++LV +Y   G +  A  LF  T  + ++V    M+  Y + G++ A
Sbjct: 149 VVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRA 208

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           +R LFD M  K VV WNVMI G AQ+G   EA+ +F  M    V PN VT V+VL A  +
Sbjct: 209 SRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSR 268

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWN 178
           +GA+E G+W+H + E +  I+++  +G+ALI+MYSKCGS+  A  VF+ + N K+ + W+
Sbjct: 269 LGAIELGKWVHLFAEKNE-IEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWS 327

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           ++I G AMHG  +DAL  F  M +  + PSD+ +IG+LSAC+HAGLV EGR  +  M + 
Sbjct: 328 AIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNI 387

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
             + P++EHYGCMV+LL RAG +EEA +L+++M ++PD V+   LLGAC++HGNI +GE+
Sbjct: 388 VGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGER 447

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           IA+ L+     +SG+YV LSN++A+ GNW+GV +VR  MKE  ++K+PGCS IEL   +H
Sbjct: 448 IAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIH 507

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           EFL  D  HP+++ I+ MLEE++  L++ GY P T  VL ++ EK+KQ++L  HSEK+A+
Sbjct: 508 EFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAI 567

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGLIST+P T ++IVKNLRVC DCH+  KL+SK   RKI++RDR RFHHF NG+CSC D
Sbjct: 568 AFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMD 627

Query: 479 YW 480
           YW
Sbjct: 628 YW 629



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 40/279 (14%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-------HGLANEALVLFRRMLAEK-V 103
           + Q E+  AR  F  +   +   WN +I   A        H  + EAL+ F  ML +  V
Sbjct: 60  STQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLV 119

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIEN----------SRNIKVNVQVG------- 146
           EPN+ T   VL AC ++  +E G+ +H ++            S  ++V V  G       
Sbjct: 120 EPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHV 179

Query: 147 --------------TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                           +I+ Y + G L+ +R +FD + +K VV WN MI G A +G  K+
Sbjct: 180 LFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKE 239

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+++F++M    + P+ +T + +L A +  G +  G ++ +   ++  IE        ++
Sbjct: 240 AIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALI 298

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ S+ G +++A ++   ++ + + + W  ++G   +HG
Sbjct: 299 DMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHG 337


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/475 (45%), Positives = 330/475 (69%), Gaps = 1/475 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++++L +   L+D++A  G++  A+ +F  M  R ++S T+++T +A  G++  AR  FD
Sbjct: 239 VERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFD 298

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            + E+D V W  MIDGY +     EAL LFR M    V+P+E T V++L+AC  +GALE 
Sbjct: 299 QIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALEL 358

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G W+ +YI+ + +IK +  VG ALI+MY KCG++  A+ VF  ++ KD   W +MIVG A
Sbjct: 359 GEWVKTYIDKN-SIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLA 417

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           ++G G++AL +F+ M    + P +IT+IG+L AC HAG+V +G+ FF +M  ++ I+P V
Sbjct: 418 INGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNV 477

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
            HYGCMV+LL RAG++EEA++++++M ++P+S++WG+LLGACR+H N+ L E  A+ ++ 
Sbjct: 478 THYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILE 537

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               N   YVLL NIYAA   W+ + +VR LM E+G++K PGCS +EL+  V+EF+AGD 
Sbjct: 538 LEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQ 597

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP+SKEIY  LE +   L   GY P T  V  D+GE+ K+ +L  HSEKLA+A+ LIS+
Sbjct: 598 SHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISS 657

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            PG +I+IVKNLR+C DCH + KL+S+   R++++RD+ RFHHF +G+CSC ++W
Sbjct: 658 GPGITIRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 134/267 (50%), Gaps = 34/267 (12%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           V  AR +FD  +  +VV WN+M+ GY +     ++ +LF  M    V PN VT V +LSA
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           C ++  LE G+ I+ YI N   ++ N+ +   LI+M++ CG + +A+ VFD + ++DV+ 
Sbjct: 218 CSKLKDLEGGKHIYKYI-NGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVIS 276

Query: 177 WNSMIVGYA--------------------------MHGFGK-----DALQLFNEMCRIRL 205
           W S++ G+A                          + G+ +     +AL LF EM    +
Sbjct: 277 WTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNV 336

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           KP + T + +L+ACAH G +  G  +  T  D+ +I+        ++++  + G V +A 
Sbjct: 337 KPDEFTMVSILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAK 395

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGN 292
           K+  +M    D   W  ++    ++G+
Sbjct: 396 KVFKEMH-HKDKFTWTAMIVGLAINGH 421



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           LS++ LF    Q+ +++      C  + G++  AR +FD + +  +  WN MI GY++  
Sbjct: 35  LSSDPLF----QKRVIAFC----CAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRIN 86

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
                + ++  MLA  ++P+  T   +L    +  AL+ G+ + ++         N+ V 
Sbjct: 87  HPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV-KHGFDSNLFVQ 145

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
            A I+M+S C  +  AR VFD  +  +VV WN M+ GY      K +  LF EM +  + 
Sbjct: 146 KAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVS 205

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P+ +T + +LSAC+    +  G+  +  +     +E  +     ++++ +  G+++EA  
Sbjct: 206 PNSVTLVLMLSACSKLKDLEGGKHIYKYINGG-IVERNLILENVLIDMFAACGEMDEAQS 264

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           +  +MK   D + W +++      G I L  K
Sbjct: 265 VFDNMK-NRDVISWTSIVTGFANIGQIDLARK 295



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 32/186 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K S+  D +V  +L+D+Y + G+V  A+K+                              
Sbjct: 368 KNSIKNDTFVGNALIDMYFKCGNVGKAKKV------------------------------ 397

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F +M  KD   W  MI G A +G   EAL +F  M+   + P+E+T + VL AC   G 
Sbjct: 398 -FKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGM 456

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
           +E G+     +     IK NV     ++++  + G L++A  V   +  K + +VW S++
Sbjct: 457 VEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516

Query: 182 VGYAMH 187
               +H
Sbjct: 517 GACRVH 522


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/437 (49%), Positives = 311/437 (71%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T+++  YAK G+V  AR LFD M+ +DVV W+ MI GY+Q     EAL LF  M    +
Sbjct: 263 ITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANI 322

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +PNE+T V++LS+C  +GALE+G+W+H +I+  R +K+ V +GTAL++ Y+KCGS++ + 
Sbjct: 323 DPNEITMVSILSSCAVLGALETGKWVHFFIKKKR-MKLTVTLGTALMDFYAKCGSVESSI 381

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF ++  K+V+ W  +I G A +G GK AL+ F  M    ++P+D+TFIG+LSAC+HAG
Sbjct: 382 EVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAG 441

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EGR  F +M  ++ IEP++EHYGCMV++L RAG +EEA++ + +M I+P++V+W TL
Sbjct: 442 LVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTL 501

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L +C++H N+ +GE+  + LI     +SG Y+LLSNIYA++G W+   +VR  MKEKG++
Sbjct: 502 LASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIK 561

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS IEL   +HEF A D  H +S+EIY  +E++   +K+ GYVP T     D  E 
Sbjct: 562 KTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEED 621

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K++S+  HSEKLA+AFGLI + PGT+I+I KNLRVC DCH   KL+SK   R+I++RDR
Sbjct: 622 DKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDR 681

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF  G+CSC DYW
Sbjct: 682 TRFHHFKEGSCSCNDYW 698



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 160/287 (55%), Gaps = 34/287 (11%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA  GEV  AR +FD+M E++V  WN M  GY + G   E + LF  ML   +  
Sbjct: 164 TLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRF 223

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +EVT V+VL+ACG++  LE G WI+ Y+E  + +K N  + T+L++MY+KCG +  AR +
Sbjct: 224 DEVTLVSVLTACGRLADLELGEWINRYVEE-KGLKGNPTLITSLVDMYAKCGQVDTARRL 282

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD+++ +DVV W++MI GY+     ++AL LF+EM +  + P++IT + +LS+CA  G +
Sbjct: 283 FDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGAL 342

Query: 226 NEGR--RFF-------------NTMKDEYA----IEPKVEHYGCM-----------VNLL 255
             G+   FF               + D YA    +E  +E +G M           +  L
Sbjct: 343 ETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGL 402

Query: 256 SRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           +  GQ ++A   + L+++  +EP+ V +  +L AC   G +  G  +
Sbjct: 403 ASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDL 449



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 148/319 (46%), Gaps = 45/319 (14%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  ++E D   +N+MI G+      +EA++LF+ M    V+P+E T   +L  C ++ A
Sbjct: 80  IFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQA 139

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G  IH+ I        +  V   LI+MY+ CG ++ AR VFD +++++V  WNSM  
Sbjct: 140 LSEGEQIHALIMKC-GFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFA 198

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC----------------------- 219
           GY   G  ++ ++LF+EM  + ++  ++T + +L+AC                       
Sbjct: 199 GYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKG 258

Query: 220 ------------AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
                       A  G V+  RR F+ M         V  +  M++  S+A +  EA  L
Sbjct: 259 NPTLITSLVDMYAKCGQVDTARRLFDQMDRR-----DVVAWSAMISGYSQASRCREALDL 313

Query: 268 VMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAA 323
             +M+   I+P+ +   ++L +C + G +  G+ +  ++  + +  + T    L + YA 
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAK 373

Query: 324 IGNWDGVARVRTLMKEKGV 342
            G+ +    V   M  K V
Sbjct: 374 CGSVESSIEVFGKMPVKNV 392



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 32/177 (18%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           + T+L+D YA+ G V S+ ++F  MP                                K+
Sbjct: 363 LGTALMDFYAKCGSVESSIEVFGKMPV-------------------------------KN 391

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           V+ W V+I G A +G   +AL  F  ML + VEPN+VT + VLSAC   G ++ GR +  
Sbjct: 392 VLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFV 451

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
            +     I+  ++    ++++  + G +++A + + +     + V+W +++    +H
Sbjct: 452 SMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 34/219 (15%)

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+  A  +F ++++ D   +N MI G+ +     +A+ LF EM    ++P + TF  +L 
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 218 ACAHAGLVNEGRRFF---------------NTMKDEYA---------------IEPKVEH 247
            C+    ++EG +                 NT+   YA                E  V  
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 248 YGCMVNLLSRAGQVEEAYKL---VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  M    +++G  EE  KL   ++++ I  D V   ++L AC    ++ LGE I  Y+ 
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVE 252

Query: 305 SQNLANSGTYVL-LSNIYAAIGNWDGVARVRTLMKEKGV 342
            + L  + T +  L ++YA  G  D   R+   M  + V
Sbjct: 253 EKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDV 291


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/481 (46%), Positives = 334/481 (69%), Gaps = 2/481 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
             K+  + +L+V  SLVDLY + G    A+KLF  M  R +VS  T+++ Y   G V  A
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQ 119
           R++FD M EK++V W+ MI GYA++    +A+ LFR+M  E  + PN+VT V+VLSAC  
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAH 272

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G+WIH +I  ++ I+V + +G AL +MY+KCG + +A+ VF  ++++DV+ W+ 
Sbjct: 273 LGALDLGKWIHRFIRRNK-IEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSI 331

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I+G AM+G+  +A   F EM    L+P+DI+F+GLL+AC HAGLV++G  +F+ M   Y
Sbjct: 332 IIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVY 391

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I PK+EHYGC+V+LLSRAG++++A  L+  M ++P+ ++WG LLG CR++ +   GE++
Sbjct: 392 GITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERV 451

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              ++  +  +SG+ V L+N+YA++G  D  A  R  M++    K PGCS IE++N V+E
Sbjct: 452 VWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYE 511

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F  GD  HP+S  IY M+ E+   +K  GY P+T +V+H+I E++K+++L  HSEKLA+A
Sbjct: 512 FFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALA 571

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FGLI+T  GT+I+IVKNLRVC DCH   K+ISK   R+I++RDR+RFHHF +G CSC DY
Sbjct: 572 FGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDY 631

Query: 480 W 480
           W
Sbjct: 632 W 632



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 129/278 (46%), Gaps = 44/278 (15%)

Query: 52  AKQGEVAAARVLFDD-MEEKDVVCWNVMIDGYAQHGLANEALVLFRR--MLAEKVEPNEV 108
           +  G +  + ++F+  +   ++  +N ++  ++QH   +  +  F    +L     P+E 
Sbjct: 69  SSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEY 128

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS---------- 158
           T  +VL AC  +  +  G+ +H ++      + N+ V  +L+++Y K G           
Sbjct: 129 TFTSVLKACAGLAQVLEGQKVHCFV-TKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDE 187

Query: 159 ---------------------LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
                                +  AR+VFD + +K++V W++MI GYA +    DA++LF
Sbjct: 188 MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELF 247

Query: 198 NEMCRI-RLKPSDITFIGLLSACAHAGLVNEGR---RFFNTMKDEYAIEPKVEHYGCMVN 253
            +M     L P+D+T + +LSACAH G ++ G+   RF    K    IE  +     + +
Sbjct: 248 RQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNK----IEVGLFLGNALAD 303

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + ++ G V EA  +  +M  E D + W  ++    ++G
Sbjct: 304 MYAKCGCVLEAKGVFHEMH-ERDVISWSIIIMGLAMYG 340


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/482 (47%), Positives = 322/482 (66%), Gaps = 3/482 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
            V+  L   L V+ +L+ ++A   G +  A  L  T       +  T++T +A+ G VA 
Sbjct: 118 AVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVAD 177

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LFD+M E++ V W+ M++GY Q G   EAL +F +M A+ V P++   V VL+AC Q
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQ 237

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GALE G+W+H Y++ + NI++ V +GTAL++MY+KCG ++    VF+ + DK+V+ W +
Sbjct: 238 LGALEQGKWVHGYLK-ANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTT 296

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G AMHG G D+L LF++M    +KP DI FIG L AC H GLV++GR  FN+M + Y
Sbjct: 297 MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNY 356

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGCMV+LL+R G + EA  +V  M ++PD+++WG L+  CR H N+ L E +
Sbjct: 357 GIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 416

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++ I      SG YVLL NIY+A G       +R LM+EKGV+K PGCS++E+   +H+
Sbjct: 417 IKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQ 476

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           F+ GDL HP+ K+I     EI+  ++  EGYVP  + VL DI E++ +++L  HSEKLA+
Sbjct: 477 FIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAI 536

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AF LIST+    I+IVKNLRVC DCH V KLISK  GR+I++RDR RFH F +GTCSC D
Sbjct: 537 AFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKD 596

Query: 479 YW 480
           YW
Sbjct: 597 YW 598


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/471 (47%), Positives = 312/471 (66%), Gaps = 10/471 (2%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y +   +  A +LF  MP R+  S  TM+T YA+ G +  A++LFD+M ++D +
Sbjct: 312 NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCI 371

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  MI GYAQ G + EAL LF +M  +    N       LS+C +I ALE G+ +H   
Sbjct: 372 SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHG-- 429

Query: 134 ENSRNIKVNVQVG----TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
              R +K   Q G     AL+ MY KCGS+++A  VF+ + +KD+V WN+MI GYA HGF
Sbjct: 430 ---RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           GK+AL LF  M ++ +KP D+T +G+LSAC+H GLV++G  +FN+M   Y I    +HY 
Sbjct: 487 GKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           CM++LL RAG+++EA  L+  M   PD+  WG LLGA R+HG+  LGEK AE +      
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD 605

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           NSG YVLLSN+YAA G W  V  +R+ M++KGV+K PG S +E+ NK H F  GD  HP+
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPE 665

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
           ++ IY  LEE++  LK +G+V  T++VLHD+ E++K++ L+ HSEKLAVAFG++S  PG 
Sbjct: 666 AERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGR 725

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            I+++KNLRVC DCH   K ISK T R+I++RD NRFHHF  G+CSCGDYW
Sbjct: 726 PIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 21/266 (7%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A K+F  MP R L+S   ML+ Y K G ++AAR LF+ M EKDVV WN M+ G+AQ+G  
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EA  +F +ML +    NE++   +LSA  Q G +E  R +     +   +  N  +G  
Sbjct: 170 EEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG- 224

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
               Y +   L DAR +FDR+  +D + WN MI GYA +G   +A +LF E     L   
Sbjct: 225 ----YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEE-----LPIR 275

Query: 209 DI-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           D+  +  ++S     G+++E  R F  M ++  +      +  M+    ++ Q+E+A +L
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKAREL 330

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNI 293
             D     ++  W T++      GNI
Sbjct: 331 -FDQMPSRNTSSWNTMVTGYAQCGNI 355



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 157/325 (48%), Gaps = 26/325 (8%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D D+      +  Y R G   SA  +F  M +RS V+   M++ Y    +   AR +F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M ++D++ WNVM+ GY ++G  + A  LF +M     E + V+  A+LS   Q G +E 
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQM----PEKDVVSWNAMLSGFAQNGFVEE 171

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
            R I   +     I  N      L++ Y + G ++DAR +FD   D ++V WN ++ GY 
Sbjct: 172 ARKIFDQMLVKNEISWN-----GLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM--KDEYAIEP 243
                 DA  LF+ M  +R K   I++  +++  A  GL++E RR F  +  +D +A   
Sbjct: 227 RKKRLDDARSLFDRM-PVRDK---ISWNIMITGYAQNGLLSEARRLFEELPIRDVFA--- 279

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
               +  MV+   + G ++EA ++  +M  E + V W  ++        I    ++ + +
Sbjct: 280 ----WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKARELFDQM 334

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWD 328
            S+N ++  T V     YA  GN D
Sbjct: 335 PSRNTSSWNTMV---TGYAQCGNID 356



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 136/278 (48%), Gaps = 19/278 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D+DL     ++  Y + G++ +A  LF  MP++ +VS   ML+ +A+ G V  AR +FD 
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  K+ + WN ++  Y Q+G   +A    RR+   K++   V+   ++    +   L+  
Sbjct: 179 MLVKNEISWNGLLSAYVQNGRIEDA----RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDA 234

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +   +     I  N+     +I  Y++ G L +AR +F+ +  +DV  W +M+ G+  
Sbjct: 235 RSLFDRMPVRDKISWNI-----MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ 289

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G   +A ++F EM     + +++++  +++    +  + + R  F+ M           
Sbjct: 290 NGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTS 340

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +  MV   ++ G +++A K++ D   + D + W  ++
Sbjct: 341 SWNTMVTGYAQCGNIDQA-KILFDEMPQRDCISWAAMI 377


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/441 (50%), Positives = 304/441 (68%), Gaps = 1/441 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SL   T ++  Y K GE+ +AR +FD M+ KDV+ W  MI  YAQ    + A  LF +M 
Sbjct: 266 SLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMR 325

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              V PNE+T V++LS C   GAL+ G+W H+YI+  + ++V+V + TALI+MY+KCG +
Sbjct: 326 DNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDK-QGVEVDVILKTALIDMYAKCGDI 384

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             A+ +F    D+D+  WN M+ GY MHG+G+ AL+LF EM  + +KP+DITFIG L AC
Sbjct: 385 SGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHAC 444

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +HAGLV EG+  F  M  ++ + PKVEHYGCMV+LL RAG ++EAYK++  M + P+  +
Sbjct: 445 SHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAI 504

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           WG +L AC++H N  +GE  A  L++    N G  VL+SNIYAA   W+ VA +R  +K+
Sbjct: 505 WGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKD 564

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
            G++KEPG SSIE++  VH+F  GD  HP  ++I  ML E++  LK  GY+P T +VLH+
Sbjct: 565 TGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHN 624

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           I E++K+ +L  HSEKLA+AFGLIST PGT I++VKNLR+C DCH V KL+SK   R I+
Sbjct: 625 IDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVII 684

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RDRNRFHHF  G+CSCG YW
Sbjct: 685 VRDRNRFHHFREGSCSCGGYW 705



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 166/298 (55%), Gaps = 15/298 (5%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +VK  L  D++V  +L+ +Y+  G ++SA  LF  M +R +VS +TM+  Y         
Sbjct: 135 SVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI-------- 186

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             LF    ++ +V W  MI GY +     E   LF RM+ E V PN++T ++++ +CG +
Sbjct: 187 -TLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFV 245

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GA++ G+ +H+YI  +    +++ + TAL++MY KCG ++ AR +FD + +KDV+ W +M
Sbjct: 246 GAVQLGKRLHAYILRN-GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAM 304

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I  YA       A QLF +M    ++P+++T + LLS CA  G ++ G ++F+   D+  
Sbjct: 305 ISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYIDKQG 363

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           +E  V     ++++ ++ G +  A +L  +  I+ D   W  ++    +HG    GEK
Sbjct: 364 VEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMHG---YGEK 417



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 137/305 (44%), Gaps = 69/305 (22%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTAL 149
           AL  +  M    +E +     +VL AC QI     G+ IH + ++N   +  +V V  AL
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKN--GLVSDVFVVNAL 150

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA--MHGFGKDAL------------- 194
           + MYS+CGSL  ARL+FD+++++DVV W++MI  Y    +GF + ++             
Sbjct: 151 MQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRC 210

Query: 195 -------QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF---------------- 231
                  +LF  M    + P+DIT + L+ +C   G V  G+R                 
Sbjct: 211 NDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA 270

Query: 232 -------------------FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
                              F++MK++      V  +  M++  ++A  ++ A++L + M+
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNK-----DVMTWTAMISAYAQANCIDYAFQLFVQMR 325

Query: 273 ---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWD 328
              + P+ +   +LL  C ++G + +G+    Y+  Q +  +      L ++YA  G+  
Sbjct: 326 DNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDIS 385

Query: 329 GVARV 333
           G  R+
Sbjct: 386 GAQRL 390



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 32/186 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ D+ + T+L+D+YA+ GD+  A++LF+    R + +   M+  Y           
Sbjct: 361 KQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGY----------- 409

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                 HG   +AL LF  M    V+PN++T +  L AC   G 
Sbjct: 410 --------------------GMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGL 449

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           +  G+ +   + +   +   V+    ++++  + G L +A +++       ++ +W +M+
Sbjct: 450 VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509

Query: 182 VGYAMH 187
               +H
Sbjct: 510 AACKIH 515


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/436 (50%), Positives = 314/436 (72%), Gaps = 3/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G+V AARV+FD M+ + VV +N MI    +  L  EALVLFR M A+ ++P
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKP 237

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             VT ++VLSAC  +GALE GRWIH YI   R +   V+V TALI+MY+KCGSL+DA  V
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMR-LDSLVKVNTALIDMYAKCGSLEDAIGV 296

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D   W+ M+V YA HG+G++A+ +F EM +  +KP D+TF+G+L AC+H+G+V
Sbjct: 297 FQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +EG ++F++M+ EY I   ++HYGC+ +LL+R+GQ+E AYK + ++ I+P ++LW TLL 
Sbjct: 357 SEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLS 415

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  HG++ +G+++ E ++  + ++ G YV+ SN+ A  G W+ +  VR LM EKGV K 
Sbjct: 416 ACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKV 475

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE+ N VHEF AGD  HP S+E   M++E+   LK  GYVP T  V H ++GE++
Sbjct: 476 PGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEE 535

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  SL  HSEKLA++FGL++T PGT+++IVKNLRVCPDCH++ KL+S    R+I++RD N
Sbjct: 536 KATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLN 595

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 596 RFHHFEDGVCSCGDYW 611



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 134/258 (51%), Gaps = 13/258 (5%)

Query: 44  LTTMLTCYAKQG-----EVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALV---- 93
           +T +LT   +QG      +A AR +FD +    DVV +N ++ GYA+ G           
Sbjct: 65  VTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAAR 124

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           +F RM+ E V P+  T V++L AC    A E GR  H  +        +  V   LINMY
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHG-VAVKAGAAEHEYVAPTLINMY 183

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           ++CG ++ AR++FDR++ + VV +N+MI          +AL LF EM    LKP+ +T I
Sbjct: 184 AECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLI 243

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +LSACA  G +  GR   + ++ +  ++  V+    ++++ ++ G +E+A  +  DM+ 
Sbjct: 244 SVLSACALLGALELGRWIHDYIR-KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMES 302

Query: 274 EPDSVLWGTLLGACRLHG 291
             D   W  ++ A   HG
Sbjct: 303 R-DKQAWSVMMVAYANHG 319



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 48/230 (20%)

Query: 40  SLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV + T ++  YAK G +  A  +F DME +D   W+VM+  YA HG   EA+ +F  M
Sbjct: 272 SLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEM 331

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN--IKVNVQVGTALINMYSKC 156
             + ++P++VT + VL AC   G +  G     Y ++ R   I   ++    + ++ ++ 
Sbjct: 332 KKQGMKPDDVTFLGVLYACSHSGMVSEGL---QYFDSMREYGIVSGIKHYGCVTDLLARS 388

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L+ A    D                                   + +KP+ I +  LL
Sbjct: 389 GQLERAYKFID----------------------------------ELPIKPTAILWRTLL 414

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV---NLLSRAGQVEE 263
           SACA  G V+ G+R F     E  +E    H G  V   NL +  G+ EE
Sbjct: 415 SACAGHGDVDMGKRVF-----ERILELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/479 (46%), Positives = 324/479 (67%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   +KD+YV  SLV +YA  GD  +A  +F  M    +VS T+M+  + K G+V +AR
Sbjct: 146 IKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESAR 205

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M EK++V W+ MI GYAQ+   ++A+ LF+ + ++ V  NE   V+V+S+C  +G
Sbjct: 206 KLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLG 265

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G   H Y+  +  + +N+ +GTAL++MY++CGS+  A  VF+ + ++D + W ++I
Sbjct: 266 ALELGERAHDYVVKN-GMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALI 324

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G AMHG+ + +L+ F  M    L P DITF  +LSAC+H GLV  G + F +MK ++ +
Sbjct: 325 AGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRV 384

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+LL RAG++EEA + V+ M ++P++ +WG LLGACR+H N  +GE++ +
Sbjct: 385 EPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGK 444

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     +SG YVLLSNIYA    W+ V  +R +MK KG++K PG S IEL  +VH+F 
Sbjct: 445 ILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFT 504

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP+  +I  M EEI   ++A GY   T   L DI E++K+++L  HSEKLA+AFG
Sbjct: 505 IGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFG 564

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++ ++ GT I+IVKNLRVC DCH   KLISK  GR++++RDRNRFHHF  G CSC DYW
Sbjct: 565 MMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 103/232 (44%), Gaps = 25/232 (10%)

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
           V+   GT+LI+  S+         +F ++ + ++ ++N+MI G++       A   + + 
Sbjct: 60  VDPSSGTSLIDYASR---------IFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQS 110

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
            R  L P ++TF  L+ +C     ++ G +    +  ++  E  V     +V++ +  G 
Sbjct: 111 QRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHII-KHGFEKDVYVQNSLVHMYATFGD 169

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
            E A  L+       D V W +++      G++    K+ + +  +NL    T+  + + 
Sbjct: 170 TEAA-TLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLV---TWSTMISG 225

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKE--------PGCS---SIELSNKVHEFL 361
           YA   ++D    +  +++ +GV+            C+   ++EL  + H+++
Sbjct: 226 YAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYV 277


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/436 (50%), Positives = 314/436 (72%), Gaps = 3/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G+V AARV+FD M+ + VV +N MI    +  L  EALVLFR M A+ ++P
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKP 237

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             VT ++VLSAC  +GALE GRWIH YI   R +   V+V TALI+MY+KCGSL+DA  V
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMR-LDSLVKVNTALIDMYAKCGSLEDAIGV 296

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D   W+ M+V YA HG+G++A+ +F EM +  +KP D+TF+G+L AC+H+G+V
Sbjct: 297 FQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +EG ++F++M+ EY I   ++HYGC+ +LL+R+GQ+E AYK + ++ I+P ++LW TLL 
Sbjct: 357 SEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLS 415

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  HG++ +G+++ E ++  + ++ G YV+ SN+ A  G W+ +  VR LM EKGV K 
Sbjct: 416 ACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKV 475

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE+ N VHEF AGD  HP S+E   M++E+   LK  GYVP T  V H ++GE++
Sbjct: 476 PGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEE 535

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  SL  HSEKLA++FGL++T PGT+++IVKNLRVCPDCH++ KL+S    R+I++RD N
Sbjct: 536 KATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLN 595

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 596 RFHHFEDGVCSCGDYW 611



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 137/258 (53%), Gaps = 13/258 (5%)

Query: 44  LTTMLTCYAKQG-----EVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGL----ANEALV 93
           +T +LT   +QG      +A AR +FD +    DVV +N ++ GYA+ G     A EA  
Sbjct: 65  VTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAAR 124

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           +F RM+ E V P+  T V++L AC    A E GR  H  +        +  V   LINMY
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHG-VAVKAGAAEHEYVAPTLINMY 183

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           ++CG ++ AR++FDR++ + VV +N+MI          +AL LF EM    LKP+ +T I
Sbjct: 184 AECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLI 243

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +LSACA  G +  GR   + ++ +  ++  V+    ++++ ++ G +E+A  +  DM+ 
Sbjct: 244 SVLSACALLGALELGRWIHDYIR-KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMES 302

Query: 274 EPDSVLWGTLLGACRLHG 291
             D   W  ++ A   HG
Sbjct: 303 R-DKQAWSVMMVAYANHG 319



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 48/230 (20%)

Query: 40  SLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV + T ++  YAK G +  A  +F DME +D   W+VM+  YA HG   EA+ +F  M
Sbjct: 272 SLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEM 331

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN--IKVNVQVGTALINMYSKC 156
             + ++P++VT + VL AC   G +  G     Y ++ R   I   ++    + ++ ++ 
Sbjct: 332 KKQGMKPDDVTFLGVLYACSHSGMVSEGL---QYFDSMREYGIVSGIKHYGCVTDLLARS 388

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L+ A    D                                   + +KP+ I +  LL
Sbjct: 389 GQLERAYKFID----------------------------------ELPIKPTAILWRTLL 414

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV---NLLSRAGQVEE 263
           SACA  G V+ G+R F     E  +E    H G  V   NL +  G+ EE
Sbjct: 415 SACAGHGDVDMGKRVF-----ERILELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/436 (50%), Positives = 314/436 (72%), Gaps = 3/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G+V AARV+FD M+ + VV +N MI    +  L  EALVLFR M A+ ++P
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKP 237

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             VT ++VLSAC  +GALE GRWIH YI   R +   V+V TALI+MY+KCGSL+DA  V
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMR-LDSLVKVNTALIDMYAKCGSLEDAIGV 296

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D   W+ M+V YA HG+G++A+ +F EM +  +KP D+TF+G+L AC+H+G+V
Sbjct: 297 FQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMV 356

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +EG ++F++M+ EY I   ++HYGC+ +LL+R+GQ+E AYK + ++ I+P ++LW TLL 
Sbjct: 357 SEGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLS 415

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  HG++ +G+++ E ++  + ++ G YV+ SN+ A  G W+ +  VR LM EKGV K 
Sbjct: 416 ACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKV 475

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE+ N VHEF AGD  HP S+E   M++E+   LK  GYVP T  V H ++GE++
Sbjct: 476 PGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEE 535

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  SL  HSEKLA++FGL++T PGT+++IVKNLRVCPDCH++ KL+S    R+I++RD N
Sbjct: 536 KATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLN 595

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 596 RFHHFEDGVCSCGDYW 611



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 134/258 (51%), Gaps = 13/258 (5%)

Query: 44  LTTMLTCYAKQG-----EVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALV---- 93
           +T +LT   +QG      +A AR +FD +    DV+ +N ++ GYA+ G           
Sbjct: 65  VTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAAR 124

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           +F RM+ E V P+  T V++L AC    A E GR  H  +        +  V   LINMY
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHG-VAVKAGAAEHEYVAPTLINMY 183

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           ++CG ++ AR++FDR++ + VV +N+MI          +AL LF EM    LKP+ +T I
Sbjct: 184 AECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLI 243

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +LSACA  G +  GR   + ++ +  ++  V+    ++++ ++ G +E+A  +  DM+ 
Sbjct: 244 SVLSACALLGALELGRWIHDYIR-KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMES 302

Query: 274 EPDSVLWGTLLGACRLHG 291
             D   W  ++ A   HG
Sbjct: 303 R-DKQAWSVMMVAYANHG 319



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 48/230 (20%)

Query: 40  SLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV + T ++  YAK G +  A  +F DME +D   W+VM+  YA HG   EA+ +F  M
Sbjct: 272 SLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEM 331

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN--IKVNVQVGTALINMYSKC 156
             + ++P++VT + VL AC   G +  G     Y ++ R   I   ++    + ++ ++ 
Sbjct: 332 KKQGMKPDDVTFLGVLYACSHSGMVSEGL---QYFDSMREYGIVSGIKHYGCVTDLLARS 388

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L+ A    D                                   + +KP+ I +  LL
Sbjct: 389 GQLERAYKFID----------------------------------ELPIKPTAILWRTLL 414

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV---NLLSRAGQVEE 263
           SACA  G V+ G+R F     E  +E    H G  V   NL +  G+ EE
Sbjct: 415 SACAGHGDVDMGKRVF-----ERILELDDSHGGDYVIFSNLCANTGRWEE 459


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/483 (47%), Positives = 311/483 (64%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  L  DLYV+TSL+ LY + G++  A K+F  M  R + S   +L  Y K G + AA 
Sbjct: 198 LRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAAL 257

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACGQ 119
            +F+ M  +++V W  MI GY+Q GLA +AL LF  M+ E   V PN VT ++VL AC Q
Sbjct: 258 AIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQ 317

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVVVW 177
           +  LE GR IH  +     +  N  V  AL  MY+KCGSL DAR  FD++N  +K+++ W
Sbjct: 318 LSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAW 376

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI  YA +G G  A+  F EM +  ++P DITF GLLS C+H+GLV+ G ++FN M  
Sbjct: 377 NTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMST 436

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            Y+I P+VEHY C+ +LL RAG++ EA KLV +M +     +WG+LL ACR H N+ + E
Sbjct: 437 TYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAE 496

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L      N+G YVLLSN+YA  G W  V ++R ++K +G +K PGCS IE++ K 
Sbjct: 497 TAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKA 556

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H FL GD  HP+ KEIYM LE +   +KA GY P T  VLHDI E++K+ +L  HSEKLA
Sbjct: 557 HMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLA 616

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFG+++T   T +++ KNLR+C DCH     IS+  GR++++RD NRFHHF  G CSCG
Sbjct: 617 VAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCG 676

Query: 478 DYW 480
           DYW
Sbjct: 677 DYW 679



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 38/304 (12%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G  + A  L   +   +LV  + M+  YA  G++ ++  +F+ + E   + +N MI  YA
Sbjct: 89  GHQVHAHMLLRGLQPTALVG-SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYA 147

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
           ++G A   +  +  M +     +  T   VL +  ++ ++  G+ +H  I     ++ ++
Sbjct: 148 RYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRI-GLQFDL 206

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            V T+LI +Y KCG + DA  VFD +  +DV  WN+++ GY   G    AL +F  M   
Sbjct: 207 YVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR 266

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            +    +++  ++S  + +GL  +    F+ M  E                         
Sbjct: 267 NI----VSWTTMISGYSQSGLAQQALSLFDEMVKE------------------------- 297

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYA 322
                 D  + P+ V   ++L AC     +  G +I E      L +N+   + L+ +YA
Sbjct: 298 ------DSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 351

Query: 323 AIGN 326
             G+
Sbjct: 352 KCGS 355



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 25/228 (10%)

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L+    P  ++   V      +  L+ G  +H+++   R ++    VG+ ++  Y+  G 
Sbjct: 62  LSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHML-LRGLQPTALVGSKMVAFYASSGD 120

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF------ 212
           +  +  VF+ + +   +++NSMI  YA +GF +  +  +  M          TF      
Sbjct: 121 IDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKS 180

Query: 213 -IGLLSA----CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
            + LLS     C H  ++  G +F     D Y     +  YG       + G++ +A K+
Sbjct: 181 SVELLSVWMGKCVHGLILRIGLQF-----DLYVATSLIILYG-------KCGEINDAGKV 228

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
             +M I  D   W  LL      G I     I E +  +N+ +  T +
Sbjct: 229 FDNMTIR-DVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMI 275


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/436 (49%), Positives = 303/436 (69%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  YAK G V +A  LF+ M +K+VV WN +I GY+QHG  +EAL LF  M A+ ++
Sbjct: 361 NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIK 420

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+    V+VL AC    ALE G+ IH Y   S   + NV VGT L+++Y+KCG++  A+ 
Sbjct: 421 PDSFAIVSVLPACAHFLALEQGKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQK 479

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+R+ ++DVV W +MI+ Y +HG G+DAL LF++M     K   I F  +L+AC+HAGL
Sbjct: 480 LFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGL 539

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V++G ++F  MK +Y + PK+EHY C+V+LL RAG ++EA  ++ +M +EPD+ +WG LL
Sbjct: 540 VDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H NI LGE+ A++L   +  N+G YVLLSNIYA    W+ VA++R +MKEKGV+K
Sbjct: 600 GACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKK 659

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           +PGCS + +   V  FL GD  HP+S++IY MLE +   ++  GYVP T + L D+ E+ 
Sbjct: 660 QPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEA 719

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+N L  HSEKLA++FG+I+T PG  I+I+KNLRVC DCH   K ISK  GR+I++RD N
Sbjct: 720 KENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDAN 779

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHH  NG CSCGDYW
Sbjct: 780 RFHHVKNGFCSCGDYW 795



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 146/260 (56%), Gaps = 9/260 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V  A  LF+ M  +DV  WN +I GY+ +   +EAL  F RM    ++PN
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V+VL AC  + ALE G+ IH Y   S   + N  VG AL+NMY+KCG++  A  +F
Sbjct: 322 SITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLF 380

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +R+  K+VV WN++I GY+ HG   +AL LF EM    +KP     + +L ACAH   + 
Sbjct: 381 ERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALE 440

Query: 227 EGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +G++    T++  +  E  V     +V++ ++ G V  A KL   M  E D V W T++ 
Sbjct: 441 QGKQIHGYTIRSGF--ESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMIL 497

Query: 286 ACRLHGN----IALGEKIAE 301
           A  +HG+    +AL  K+ E
Sbjct: 498 AYGIHGHGEDALALFSKMQE 517



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 178/380 (46%), Gaps = 49/380 (12%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           ++ D  V  S++       D+ +  K+   +  R   S     T + + Y K G +  AR
Sbjct: 116 INPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENAR 175

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M ++DVV WN +I GY+Q+G   EAL LF  M    ++PN  T V+V+  C  + 
Sbjct: 176 QVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLL 235

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+ IH Y   S  I+ +V V   L+NMY+KCG++  A  +F+R+  +DV  WN++I
Sbjct: 236 ALEQGKQIHCYAIRS-GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAII 294

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY+++    +AL  FN M    +KP+ IT + +L ACAH   + +G++        YAI
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG-----YAI 349

Query: 242 EPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMK------------------------- 272
               E        +VN+ ++ G V  AYKL   M                          
Sbjct: 350 RSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALA 409

Query: 273 ---------IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYA 322
                    I+PDS    ++L AC     +  G++I  Y I     +N      L +IYA
Sbjct: 410 LFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYA 469

Query: 323 AIGNWDGVARVRTLMKEKGV 342
             GN +   ++   M E+ V
Sbjct: 470 KCGNVNTAQKLFERMPEQDV 489



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 145/273 (53%), Gaps = 10/273 (3%)

Query: 17  VDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           V  Y  G   L    + A + +R+ V  T  ++  A Q +     +        + V W 
Sbjct: 37  VCFYFYGPSPLPTSTVVAQL-RRNKVKTTREVSACANQTQFTQTDI------RNNAVVWK 89

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
             I GY ++G  N+AL L+ +M    + P+++  ++V+ ACG    L++GR +H  I  +
Sbjct: 90  ETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII-A 148

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           R  + +V VGTAL +MY+KCGSL++AR VFDR+  +DVV WN++I GY+ +G   +AL L
Sbjct: 149 RGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALAL 208

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F+EM    +KP+  T + ++  CAH   + +G++  +       IE  V     +VN+ +
Sbjct: 209 FSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQ-IHCYAIRSGIESDVLVVNGLVNMYA 267

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
           + G V  A+KL   M I  D   W  ++G   L
Sbjct: 268 KCGNVNTAHKLFERMPIR-DVASWNAIIGGYSL 299



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + ++V  T ++  YAK G V  A+ LF+ M E+DVV W  MI  Y  HG   +AL LF +
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSK 514

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M     + + +   A+L+AC   G ++ G      +++   +   ++    L+++  + G
Sbjct: 515 MQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAG 574

Query: 158 SLKDARLVFDRVN-DKDVVVWNSMIVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFI 213
            L +A  +   ++ + D  VW +++    +H     G+ A +   E     L P +  + 
Sbjct: 575 HLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFE-----LDPDNAGYY 629

Query: 214 GLLS 217
            LLS
Sbjct: 630 VLLS 633


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/483 (46%), Positives = 317/483 (65%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  L+ D YV  SL+D+Y + G +  A KLF  M  R + S   ++  Y K+GE+  A 
Sbjct: 208 LRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAE 267

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQ 119
            LF+ ME +++V W  MI GY Q+G A +AL LF  ML +  +++PN VT V+VL AC Q
Sbjct: 268 DLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 327

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVW 177
             ALE GR IH +  N   + +N  V TAL  MY+KC SL +AR  FD +  N K+++ W
Sbjct: 328 SAALERGRRIHDF-ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 386

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI  YA HG G +A+ +F  M R  ++P  +TF+GLLS C+H+GL++ G   FN M  
Sbjct: 387 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 446

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +++EP+VEHY C+V+LL RAG++ EA +L+  M ++    +WG LL ACR H N+ + E
Sbjct: 447 IHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAE 506

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L      NSG YVLLSN+YA  G W+ V ++R L+K +G++K PGCS IE++ K 
Sbjct: 507 LAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKS 566

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H F+  D  HP++KEIY  LE +   +K  GY+P T  VLHDI E++K+ +L  HSEKLA
Sbjct: 567 HLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLA 626

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL++T+PG  +++ KNLR+C DCHA  K ISK   R+I++RD NRFH F +G+CSCG
Sbjct: 627 IAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCG 686

Query: 478 DYW 480
           DYW
Sbjct: 687 DYW 689



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 45/227 (19%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG---LANEALVLFRRMLAEKV 103
           M+  YA  G++ +A V+FD ++    + +N +I  Y +HG        L  + RM    +
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL 177

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSL 159
             +  T   VL +C  +  +  GR +H      + ++V ++    VG +LI+MY KCG +
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVH-----GQGLRVGLEGDFYVGASLIDMYVKCGVI 232

Query: 160 KDARLVFD-------------------------------RVNDKDVVVWNSMIVGYAMHG 188
            DAR +FD                               R+  +++V W +MI GY  +G
Sbjct: 233 GDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNG 292

Query: 189 FGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           F + AL LF+EM +    +KP+ +T + +L ACA +  +  GRR  +
Sbjct: 293 FAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 339



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG---FGKDALQ 195
           ++ N  +   ++ MY+  G L  A +VFDR+++   +++NS+I  Y  HG        L+
Sbjct: 108 LQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLE 167

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            +  M  + L   + T   +L +CA    V  G R  +       +E        ++++ 
Sbjct: 168 AYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG-RCVHGQGLRVGLEGDFYVGASLIDMY 226

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            + G + +A KL  D  I  D   W  L+      G I + E + E +  +N+ +    +
Sbjct: 227 VKCGVIGDARKL-FDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 285

Query: 316 --LLSNIYA--AIGNWDGVARVRTLMKEKG---VQKEPGC---SSIELSNKVHEFLAG 363
                N +A  A+G +D + +  + MK      V   P C   +++E   ++H+F  G
Sbjct: 286 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 343


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/483 (48%), Positives = 326/483 (67%), Gaps = 13/483 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAAR 61
           ++ D +    L+   A+  DV   EK+ +   +    SL     T++  YA  G   +A 
Sbjct: 136 IEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAH 195

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF+ M E+++V WN +I+GYA +G  NEAL LFR M    VEP+  T V++LSAC ++G
Sbjct: 196 KLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELG 255

Query: 122 ALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           AL  GR  H Y+     +KV    N+  G AL+++Y+KCGS++ A  VFD + +K VV W
Sbjct: 256 ALALGRRAHVYM-----VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSW 310

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            S+IVG A++GFGK+AL+LF E+ R  L PS+ITF+G+L AC+H G+V+EG  +F  MK+
Sbjct: 311 TSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE 370

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           EY I PK+EHYGCMV+LL RAG V++A++ + +M ++P++V+W TLLGAC +HG++ALGE
Sbjct: 371 EYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGE 430

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
                L+     +SG YVLLSN+YA+   W  V +VR  M  +GV+K PG S +EL N++
Sbjct: 431 VARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRL 490

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEF+ GD  HP+++EIY+ L EI   LK EGYVP    VL DI E++K+ +L  HSEK+A
Sbjct: 491 HEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIA 550

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AF LI+T  G  I++VKNLRVC DCH   KLISK   R+I++RDR+RFHHF +G CSC 
Sbjct: 551 IAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCK 610

Query: 478 DYW 480
           DYW
Sbjct: 611 DYW 613



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 127/236 (53%), Gaps = 5/236 (2%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           ++ A  +F  ++  ++  WN MI GYA+      AL L+R+M    +EP+  T   +L A
Sbjct: 90  MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKA 149

Query: 117 CGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
             ++  +  G  +HS  I N     V VQ    L++MY+ CG  + A  +F+ + ++++V
Sbjct: 150 IAKLMDVREGEKVHSIAIRNGFESLVFVQ--NTLVHMYAACGHAESAHKLFELMAERNLV 207

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            WNS+I GYA++G   +AL LF EM    ++P   T + LLSACA  G +  GRR    M
Sbjct: 208 TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 267

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             +  ++  +     +++L ++ G + +A+K+  +M+ E   V W +L+    ++G
Sbjct: 268 V-KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLIVGLAVNG 321



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  LD +L+   +L+DLYA+ G +  A K+F  M ++S+VS T+++             
Sbjct: 268 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIV------------ 315

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              G A +G   EAL LF+ +  + + P+E+T V VL AC   G
Sbjct: 316 -------------------GLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 356

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            ++ G      ++    I   ++    ++++  + G +K A   + +     + VVW ++
Sbjct: 357 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 416

Query: 181 IVGYAMHG 188
           +    +HG
Sbjct: 417 LGACTIHG 424



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 103/251 (41%), Gaps = 35/251 (13%)

Query: 127 RWIHSYIENSRNIKVNVQVGTALI-NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           R IH++         N  +G  LI  + S C  +  A  +F ++ + ++  WN+MI GYA
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYA 116

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------------- 232
                  AL+L+ +M    ++P   T+  LL A A    V EG +               
Sbjct: 117 ESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVF 176

Query: 233 --NTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---K 272
             NT+   YA                E  +  +  ++N  +  G+  EA  L  +M    
Sbjct: 177 VQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRG 236

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVA 331
           +EPD     +LL AC   G +ALG +   Y++   L  N      L ++YA  G+     
Sbjct: 237 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAH 296

Query: 332 RVRTLMKEKGV 342
           +V   M+EK V
Sbjct: 297 KVFDEMEEKSV 307


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/471 (47%), Positives = 311/471 (66%), Gaps = 10/471 (2%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y +   +  A +LF  MP R+  S  TM+T YA+ G +  A++LFD+M ++D +
Sbjct: 312 NAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCI 371

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  MI GYAQ G + EAL LF +M  +    N       LS+C +I ALE G+ +H   
Sbjct: 372 SWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHG-- 429

Query: 134 ENSRNIKVNVQVG----TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
              R +K   Q G     AL+ MY KCGS+++A  VF+ + +KD+V WN+MI GYA HGF
Sbjct: 430 ---RLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           GK+AL LF  M ++ +KP D+T +G+LSAC+H G V++G  +FN+M   Y I    +HY 
Sbjct: 487 GKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           CM++LL RAG+++EA  L+  M   PD+  WG LLGA R+HG+  LGEK AE +      
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPD 605

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           NSG YVLLSN+YAA G W  V  +R+ M++KGV+K PG S +E+ NK H F  GD  HP+
Sbjct: 606 NSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPE 665

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
           ++ IY  LEE++  LK +G+V  T++VLHD+ E++K++ L+ HSEKLAVAFG++S  PG 
Sbjct: 666 AERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGR 725

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            I+++KNLRVC DCH   K ISK T R+I++RD NRFHHF  G+CSCGDYW
Sbjct: 726 PIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 21/266 (7%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A K+F  MP R L+S   ML+ Y K G ++AAR LF+ M EKDVV WN M+ G+AQ+G  
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EA  +F +ML +    NE++   +LSA  Q G +E  R +     +   +  N  +G  
Sbjct: 170 EEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG- 224

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
               Y +   L DAR +FDR+  +D + WN MI GYA +G   +A +LF E     L   
Sbjct: 225 ----YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEE-----LPIR 275

Query: 209 DI-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           D+  +  ++S     G+++E  R F  M ++  +      +  M+    ++ Q+E+A +L
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-----WNAMIAGYVQSQQIEKAREL 330

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNI 293
             D     ++  W T++      GNI
Sbjct: 331 -FDQMPSRNTSSWNTMVTGYAQCGNI 355



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 157/325 (48%), Gaps = 26/325 (8%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D D+      +  Y R G   SA  +F  M +RS V+   M++ Y    +   AR +F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M ++D++ WNVM+ GY ++G  + A  LF +M     E + V+  A+LS   Q G +E 
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQM----PEKDVVSWNAMLSGFAQNGFVEE 171

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
            R I   +     I  N      L++ Y + G ++DAR +FD   D ++V WN ++ GY 
Sbjct: 172 ARKIFDQMLVKNEISWN-----GLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYV 226

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM--KDEYAIEP 243
                 DA  LF+ M  +R K   I++  +++  A  GL++E RR F  +  +D +A   
Sbjct: 227 RKKRLDDARSLFDRM-PVRDK---ISWNIMITGYAQNGLLSEARRLFEELPIRDVFA--- 279

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
               +  MV+   + G ++EA ++  +M  E + V W  ++        I    ++ + +
Sbjct: 280 ----WTAMVSGFVQNGMLDEATRIFEEMP-EKNEVSWNAMIAGYVQSQQIEKARELFDQM 334

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWD 328
            S+N ++  T V     YA  GN D
Sbjct: 335 PSRNTSSWNTMV---TGYAQCGNID 356



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 136/278 (48%), Gaps = 19/278 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D+DL     ++  Y + G++ +A  LF  MP++ +VS   ML+ +A+ G V  AR +FD 
Sbjct: 119 DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQ 178

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  K+ + WN ++  Y Q+G   +A    RR+   K++   V+   ++    +   L+  
Sbjct: 179 MLVKNEISWNGLLSAYVQNGRIEDA----RRLFDSKMDWEIVSWNCLMGGYVRKKRLDDA 234

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +   +     I  N+     +I  Y++ G L +AR +F+ +  +DV  W +M+ G+  
Sbjct: 235 RSLFDRMPVRDKISWNI-----MITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ 289

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G   +A ++F EM     + +++++  +++    +  + + R  F+ M           
Sbjct: 290 NGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-----NTS 340

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +  MV   ++ G +++A K++ D   + D + W  ++
Sbjct: 341 SWNTMVTGYAQCGNIDQA-KILFDEMPQRDCISWAAMI 377


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/483 (47%), Positives = 311/483 (64%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  L  DLYV+TSL+ LY + G++  A K+F  M  R + S   +L  Y K G + AA 
Sbjct: 161 LRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAAL 220

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACGQ 119
            +F+ M  +++V W  MI GY+Q GLA +AL LF  M+ E   V PN VT ++VL AC Q
Sbjct: 221 AIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQ 280

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVVVW 177
           +  LE GR IH  +     +  N  V  AL  MY+KCGSL DAR  FD++N  +K+++ W
Sbjct: 281 LSTLERGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAW 339

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI  YA +G G  A+  F EM +  ++P DITF GLLS C+H+GLV+ G ++FN M  
Sbjct: 340 NTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMST 399

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            Y+I P+VEHY C+ +LL RAG++ EA KLV +M +     +WG+LL ACR H N+ + E
Sbjct: 400 TYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAE 459

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L      N+G YVLLSN+YA  G W  V ++R ++K +G +K PGCS IE++ K 
Sbjct: 460 TAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKA 519

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H FL GD  HP+ KEIYM LE +   +KA GY P T  VLHDI E++K+ +L  HSEKLA
Sbjct: 520 HMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLA 579

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFG+++T   T +++ KNLR+C DCH     IS+  GR++++RD NRFHHF  G CSCG
Sbjct: 580 VAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCG 639

Query: 478 DYW 480
           DYW
Sbjct: 640 DYW 642


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 313/441 (70%), Gaps = 6/441 (1%)

Query: 44  LTTMLTCYAKQG--EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-- 99
           + TML  YAK G  ++ AAR +FD ME KDVV WN MI  YAQ+G++ +AL L+R+ML  
Sbjct: 231 VNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKMLNV 289

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           +  ++ N VT  A+L AC   G +++G+ IH+ +     ++ NV VGT++++MYSKCG +
Sbjct: 290 SGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVR-MGLEENVYVGTSVVDMYSKCGRV 348

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + AR  F ++ +K+++ W++MI GY MHG G++AL +FNEMCR    P+ ITFI +L+AC
Sbjct: 349 EMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAAC 408

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +HAGL+++GR ++N MK  + IEP VEHYGCMV+LL RAG ++EAY L+ +MK++PD+ +
Sbjct: 409 SHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAI 468

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           WG LL ACR+H N+ L E  A+ L   +  N G YVLLSNIYA  G W  V R+R L+K 
Sbjct: 469 WGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKT 528

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           +G++K PG SS+EL  + H F  GD  HP+ KEIY  L ++   ++  GYVP T  VLHD
Sbjct: 529 RGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHD 588

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + E++K ++L +HSEKLA+AF L+++ PG+ I ++KNLRVC DCH   KLI+K   R+I+
Sbjct: 589 LDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREII 648

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD  RFHHF +G+CSCGDYW
Sbjct: 649 VRDLQRFHHFKDGSCSCGDYW 669



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 14/267 (5%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           LF + P     S + +L  Y        AR  FD++   + V    M  GY ++ L   +
Sbjct: 120 LFPSDP----FSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPS 175

Query: 92  LVLFRRMLA--EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           L LFR+++A       +E  A+   SA  +I        +H+ +  +  +  +  V   +
Sbjct: 176 LALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKT-GLDGDAGVVNTM 234

Query: 150 INMYSKCG--SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RL 205
           ++ Y+K G   L  AR VFD + +KDVV WNSMI  YA +G   DAL L+ +M  +   +
Sbjct: 235 LDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSI 293

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           K + +T   +L ACAHAG +  G+   N +     +E  V     +V++ S+ G+VE A 
Sbjct: 294 KCNAVTLSAILLACAHAGTIQTGKCIHNQVV-RMGLEENVYVGTSVVDMYSKCGRVEMAR 352

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGN 292
           K    +K E + + W  ++    +HG+
Sbjct: 353 KAFQKIK-EKNILSWSAMITGYGMHGH 378



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  L++++YV TS+VD+Y++ G V  A K F  + +++++S + M+T            
Sbjct: 324 VRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMIT------------ 371

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              GY  HG   EAL +F  M      PN +T ++VL+AC   G
Sbjct: 372 -------------------GYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAG 412

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSM 180
            L+ GR+ ++ ++    I+  V+    ++++  + G L +A  +   +  K D  +W ++
Sbjct: 413 LLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGAL 472

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 473 LSACRIH 479



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 43/258 (16%)

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           GR +H     S     +    +AL++MY+ C    DAR  FD +   + V+  +M  GY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 186 MHGFGKDALQLFNEM------CRIRLKPSDITFIGL-------LSACAHAGLVNEG---- 228
            +     +L LF ++        +    + + F          +++  HA +V  G    
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 229 RRFFNTMKDEYA----------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM- 271
               NTM D YA                +E  V  +  M+ L ++ G   +A  L   M 
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTMEKDVVSWNSMIALYAQNGMSADALGLYRKML 287

Query: 272 ----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSNIYAAI 324
                I+ ++V    +L AC   G I  G+ I   ++   L  +   GT V+  ++Y+  
Sbjct: 288 NVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVV--DMYSKC 345

Query: 325 GNWDGVARVRTLMKEKGV 342
           G  +   +    +KEK +
Sbjct: 346 GRVEMARKAFQKIKEKNI 363


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/474 (47%), Positives = 321/474 (67%), Gaps = 2/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DLYV  +L+D+Y + G +    ++F  M  R ++S T+++  YAK G + AA  LFD + 
Sbjct: 174 DLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLP 233

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KD+V W  M+ GYAQ+    EAL +F RM A  V+ +EVT V V+SAC Q+GA +   W
Sbjct: 234 MKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANW 293

Query: 129 IHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           +    E S      NV VG+ALI+MY+KCGS++DA  VF+R+ +++V  ++SMIVG+AMH
Sbjct: 294 VRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMH 353

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G    A++LF+EM +  +KP+ +TFIG+L+AC+HAG+V +G++ F  M++ + + P  +H
Sbjct: 354 GLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDH 413

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL RAG++EEA  LV  M + P   +WG LLGACR+HGN  + +  A +L    
Sbjct: 414 YACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELE 473

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK-VHEFLAGDLR 366
               G Y+LLSNIYA+ G WD V++VR LM+ KG++K PGCS +E     +HEF AGD+ 
Sbjct: 474 PNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMS 533

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HPKS+EI   LE++   LK  GY P    V +DI +++K+  L  HSEKLA+AFGL++T 
Sbjct: 534 HPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTN 593

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G +I+IVKNLR+C DCH+V    S+ TGR+I++RD  RFHHF +G CSCG++W
Sbjct: 594 AGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 41/267 (15%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R++F  +E  +   W  +I GYA  G   E+++L+  M  + + P   T  A+L AC   
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             +  GR +H+          ++ VG  LI+MY KCG L     VFD + D+DV+ W S+
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 181 IV-------------------------------GYAMHGFGKDALQLFNEMCRIRLKPSD 209
           IV                               GYA +   ++AL++F  M    +K  +
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKD-----EYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           +T +G++SACA  G      ++ N ++D      +     V     ++++ ++ G VE+A
Sbjct: 273 VTLVGVISACAQLG----AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDA 328

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHG 291
           YK+   M+ E +   + +++    +HG
Sbjct: 329 YKVFERME-ERNVYSYSSMIVGFAMHG 354



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 32/186 (17%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F    ++ V ++L+D+YA+ G V  A K+F  M +R++ S ++M+  +A  G   AA  L
Sbjct: 303 FGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMEL 362

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           FD+                               ML  +++PN VT + VL+AC   G +
Sbjct: 363 FDE-------------------------------MLKTEIKPNRVTFIGVLTACSHAGMV 391

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           E G+ + + +E    +  +      ++++  + G L++A  LV     +    VW +++ 
Sbjct: 392 EQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLG 451

Query: 183 GYAMHG 188
              +HG
Sbjct: 452 ACRIHG 457



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA--RL 164
           E   V+VL  C  I  ++    +H++I   + ++    V   L+   +K     D   RL
Sbjct: 39  ESRLVSVLHGCTHINQVKQ---VHAHIFR-KGLEQCCFVLAKLLRTLTKLDVPMDPYPRL 94

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF +V   +  +W ++I GYA+ G   +++ L+N M R  + P   TF  LL AC+ A  
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           VN GR+              +     ++++  + G +   ++ V D  ++ D + W +L+
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHR-VFDEMLDRDVISWTSLI 213

Query: 285 GACRLHGNIALGEKIAEYLISQNL 308
            A    GN+    ++ + L  +++
Sbjct: 214 VAYAKVGNMEAASELFDGLPMKDM 237


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/436 (49%), Positives = 296/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y++  E+  AR LFD+  EK V  WN MI GYAQ GL   A+ LF+ M+  +  
Sbjct: 344 TALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFT 403

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++LSAC Q+GAL  G+ +H  I+ S+N++ N+ V TALI+MY+KCG++ +A  
Sbjct: 404 PNPVTITSILSACAQLGALSFGKSVHQLIK-SKNLEQNIYVSTALIDMYAKCGNISEASQ 462

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD  ++K+ V WN+MI GY +HG+G +AL+LFNEM  +  +PS +TF+ +L AC+HAGL
Sbjct: 463 LFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGL 522

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG   F+ M ++Y IEP  EHY CMV++L RAGQ+E+A + +  M +EP   +WGTLL
Sbjct: 523 VREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLL 582

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC +H +  L    +E L   +  N G YVLLSNIY+   N+   A VR  +K++ + K
Sbjct: 583 GACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSK 642

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGC+ IE++   H F+ GD  H ++  IY  LEE+ G ++  GY  +T   LHD+ E++
Sbjct: 643 TPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEE 702

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+    VHSEKLA+AFGLI+T+PGT I+I+KNLRVC DCHA  K ISK T R I++RD N
Sbjct: 703 KELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDAN 762

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 763 RFHHFKDGICSCGDYW 778



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 3/248 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT +++ ++K  +V  AR+LF  + + D+V +N +I G++ +G    A+  FR +L    
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T V ++      G L     I  +   S  I +   V TAL  +YS+   +  AR
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTI-LQPSVSTALTTIYSRLNEIDLAR 360

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD  ++K V  WN+MI GYA  G  + A+ LF EM      P+ +T   +LSACA  G
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+     +K +  +E  +     ++++ ++ G + EA +L  D+  E ++V W T+
Sbjct: 421 ALSFGKSVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQL-FDLTSEKNTVTWNTM 478

Query: 284 LGACRLHG 291
           +    LHG
Sbjct: 479 IFGYGLHG 486



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 160/374 (42%), Gaps = 76/374 (20%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            D +L+V+++LVDLY +   V  A K+F  MP R                          
Sbjct: 134 FDSNLFVASALVDLYCKFSRVAYARKVFDKMPDR-------------------------- 167

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                D V WN MI G  ++   ++++ +F+ M+A+ V  +  T   VL A  ++  ++ 
Sbjct: 168 -----DTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKV 222

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G  I   +        +  V T LI+++SKC  +  ARL+F  +   D+V +N++I G++
Sbjct: 223 GMGIQC-LALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFS 281

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGL-----------LSACAHAGLVNEG------ 228
            +G  + A++ F E+     + S  T +GL           L+ C     V  G      
Sbjct: 282 CNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPS 341

Query: 229 ------------------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
                             R+ F    DE + E  V  +  M++  +++G  E A  L  +
Sbjct: 342 VSTALTTIYSRLNEIDLARQLF----DESS-EKTVAAWNAMISGYAQSGLTEMAISLFQE 396

Query: 271 M---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGN 326
           M   +  P+ V   ++L AC   G ++ G+ + + + S+NL  N      L ++YA  GN
Sbjct: 397 MMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGN 456

Query: 327 WDGVARVRTLMKEK 340
               +++  L  EK
Sbjct: 457 ISEASQLFDLTSEK 470



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 19/320 (5%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  L ++T +       G    AR LF  + + D+  +NV+I G++    A+        
Sbjct: 37  QHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHL 96

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           +    + P+  T    +SA         G  +H++         N+ V +AL+++Y K  
Sbjct: 97  LKNTTLSPDNFTYAFAISASPDDNL---GMCLHAH-AVVDGFDSNLFVASALVDLYCKFS 152

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  AR VFD++ D+D V+WN+MI G   +    D++Q+F +M    ++    T   +L 
Sbjct: 153 RVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLP 212

Query: 218 ACAHAGLVNEGRRF------FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           A A    V  G              D+Y +         ++++ S+   V+ A +L+  M
Sbjct: 213 AVAEMQEVKVGMGIQCLALKLGFHFDDYVLTG-------LISVFSKCEDVDTA-RLLFGM 264

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEK-IAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
             +PD V +  L+     +G      K   E L+S    +S T V L  + +  G+    
Sbjct: 265 IRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLA 324

Query: 331 ARVRTLMKEKGVQKEPGCSS 350
             ++    + G   +P  S+
Sbjct: 325 CCIQGFCVKSGTILQPSVST 344


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/474 (46%), Positives = 322/474 (67%), Gaps = 3/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L ++ +++D+Y + G +  A++LF  M ++  V+ TTML  YA   +  AAR + + M 
Sbjct: 268 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP 327

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGR 127
           +KD+V WN +I  Y Q+G  NEAL++F  + L + ++ N++T V+ LSAC Q+GALE GR
Sbjct: 328 KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR 387

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           WIHSYI+ +  IK+N  V +ALI+MYSKCG L+ AR VF+ V  +DV VW++MI G AMH
Sbjct: 388 WIHSYIKKN-GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMH 446

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G G +A+ +F +M    +KP+ +TF  +  AC+H GLV+E    F  M+  Y I P+ +H
Sbjct: 447 GCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKH 506

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+V++L R+G +E+A K +  M I P + +WG LLGAC++H N++L E     L+   
Sbjct: 507 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELE 566

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             N G +VLLSNIYA  G WD V+ +R  M+  G++KEPGCSSIE+   +HEFL+GD  H
Sbjct: 567 PRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 626

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQ 426
           P S+++Y  L E+   LK+ GY P+   VL  I E++ K+ SL +HSEKLA+ +GLIST+
Sbjct: 627 PMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTE 686

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              +I+++KNLR+C DCHAV KLIS+   R+I++RDR RFHHF NG CSC D+W
Sbjct: 687 APKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 156/278 (56%), Gaps = 35/278 (12%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++ CY   G++ +A  +F  ++EKDVV WN MI+G+ Q G  ++AL LF++M +E V+ 
Sbjct: 173 SLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 232

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT V VLSAC +I  LE GR + SYIE +R + VN+ +  A+++MY+KCGS++DA+ +
Sbjct: 233 SHVTMVGVLSACAKIRDLEFGRRVCSYIEENR-VNVNLTLANAMLDMYTKCGSIEDAKRL 291

Query: 166 FDRVNDKDVVVWNSMIVGYAM-------------------------------HGFGKDAL 194
           FD + +KD V W +M+ GYA+                               +G   +AL
Sbjct: 292 FDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEAL 351

Query: 195 QLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
            +F+E+  +  +K + IT +  LSACA  G +  GR   + +K    I+        +++
Sbjct: 352 LVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKN-GIKMNFYVTSALIH 410

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + S+ G +E+A ++   ++ + D  +W  ++G   +HG
Sbjct: 411 MYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHG 447



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 18/263 (6%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
            D  SA KLFA     S  SL               AR +FD++ + +   WN +I  YA
Sbjct: 61  SDPYSASKLFAIAALSSFASLEY-------------ARKVFDEIPQPNSFTWNTLIRAYA 107

Query: 84  QHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
                  ++  F  M++ + +  PN+ T   ++ A  ++ +L  G+ +H     S  +  
Sbjct: 108 SGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSA-VGS 166

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V V  +LI+ Y  CG L  A  VF  + +KDVV WNSMI G+   G    AL+LF +M 
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              +K S +T +G+LSACA    +  GRR  + + +E  +   +     M+++ ++ G +
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYI-EENRVNVNLTLANAMLDMYTKCGSI 285

Query: 262 EEAYKLVMDMKIEPDSVLWGTLL 284
           E+A +L   M+ E D+V W T+L
Sbjct: 286 EDAKRLFDAME-EKDNVTWTTML 307


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/496 (43%), Positives = 334/496 (67%), Gaps = 18/496 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLY--------ARG-------GDVLSAEKLFA--TMPQRSLVSL 44
           VK+ LD +++   +L+++Y        ARG        DV++   + +     ++ ++S 
Sbjct: 141 VKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISW 200

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++T +   G+V AAR  F  M E+D V W  MIDGY +     EAL+LFR M   K++
Sbjct: 201 TAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIK 260

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E T V+VL+AC Q+GALE G WI +YI+ ++ +K +  VG ALI+MY KCG+++ A  
Sbjct: 261 PDEFTMVSVLTACAQLGALELGEWIRTYIDKNK-VKNDTFVGNALIDMYFKCGNVEMALS 319

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +D   W +M+VG A++G G++AL +F++M +  + P ++T++G+LSAC H G+
Sbjct: 320 IFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGM 379

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG++FF +M   + IEP + HYGCMV+LL +AG ++EA++++ +M ++P+S++WG LL
Sbjct: 380 VDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALL 439

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H +  + E+  E ++     N   YVL  NIYAA   WD +  +R +M ++G++K
Sbjct: 440 GACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKK 499

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCS IE++  VHEF+AGD  HP++KEIY  L ++   LK  GY P T  V  DI E+ 
Sbjct: 500 TPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEED 559

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+N++  HSEKLA+AFGLI++ PG +I+IVKNLR+C DCH V KL+SK   R++++RDR 
Sbjct: 560 KENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRT 619

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+CSC DYW
Sbjct: 620 RFHHFRHGSCSCKDYW 635



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 134/286 (46%), Gaps = 34/286 (11%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
             C  + G++  AR LFD + E  V  WN+M  GY++       + L+  ML   V+P+ 
Sbjct: 55  FCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDC 114

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
            T   +     +  AL+ GR +H ++     +  NV    ALINMYS CG +  AR +FD
Sbjct: 115 YTYPFLFKGFTRSVALQLGRELHCHVV-KYGLDSNVFAHNALINMYSLCGLIDMARGIFD 173

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
                DVV WN+MI GY                   R+K   I++  +++   + G V+ 
Sbjct: 174 MSCKSDVVTWNAMISGYN------------------RIKKDVISWTAIVTGFVNTGQVDA 215

Query: 228 GRRFFNTMKDEYAIEPKVEH--YGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGT 282
            R++F+ M       P+ +H  +  M++   R    +EA  L  +M   KI+PD     +
Sbjct: 216 ARKYFHKM-------PERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVS 268

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGN 326
           +L AC   G + LGE I  Y I +N   + T+V   L ++Y   GN
Sbjct: 269 VLTACAQLGALELGEWIRTY-IDKNKVKNDTFVGNALIDMYFKCGN 313


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/483 (46%), Positives = 317/483 (65%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  L+ D YV  SL+D+Y + G +  A KLF  M  R + S   ++  Y K+GE+  A 
Sbjct: 134 LRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAE 193

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQ 119
            LF+ ME +++V W  MI GY Q+G A +AL LF  ML +  +++PN VT V+VL AC Q
Sbjct: 194 DLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 253

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVW 177
             ALE GR IH +  N   + +N  V TAL  MY+KC SL +AR  FD +  N K+++ W
Sbjct: 254 SAALERGRRIHDF-ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 312

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI  YA HG G +A+ +F  M R  ++P  +TF+GLLS C+H+GL++ G   FN M  
Sbjct: 313 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 372

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +++EP+VEHY C+V+LL RAG++ EA +L+  M ++    +WG LL ACR H N+ + E
Sbjct: 373 IHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAE 432

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L      NSG YVLLSN+YA  G W+ V ++R L+K +G++K PGCS IE++ K 
Sbjct: 433 LAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKS 492

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H F+  D  HP++KEIY  LE +   +K  GY+P T  VLHDI E++K+ +L  HSEKLA
Sbjct: 493 HLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLA 552

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL++T+PG  +++ KNLR+C DCHA  K ISK   R+I++RD NRFH F +G+CSCG
Sbjct: 553 IAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCG 612

Query: 478 DYW 480
           DYW
Sbjct: 613 DYW 615


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/487 (48%), Positives = 327/487 (67%), Gaps = 8/487 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK   + D +V+TSLV LY + G + +A K+F  +P++++ + T +++ Y   G+   A
Sbjct: 134 VVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREA 193

Query: 61  R-------VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
                    +FD M EKD+V W+ MI GYA +GL  EAL LF +ML E   P+    V V
Sbjct: 194 IDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGV 253

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC ++GALE G W  + ++ +  +  N  +GTALI+MY+KCG +  A  VF  +  KD
Sbjct: 254 LCACARLGALELGNWASNLMDRNEFLG-NPVLGTALIDMYAKCGRMDSAWEVFRGMRKKD 312

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           +VVWN+ I G AM G  K A  LF +M +  ++P   TF+GLL AC HAGLV+EGR++FN
Sbjct: 313 IVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFN 372

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           +M+  + + P++EHYGCMV+LL RAG ++EA++LV  M +E ++++WG LLG CRLH + 
Sbjct: 373 SMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDT 432

Query: 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353
            L E + + LI+   +NSG YVLLSNIY+A   W+  A++R++M E+G++K PG S IE+
Sbjct: 433 QLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEV 492

Query: 354 SNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHS 413
              VHEFL GD  HP S++IY  L E+   LKA GYVP T  VL DI E++K++ +  HS
Sbjct: 493 DGVVHEFLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHS 552

Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           EKLA+AFGLIST P   I++VKNLRVC DCH   K IS+FTGR+I++RD NRFH F +G+
Sbjct: 553 EKLAIAFGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGS 612

Query: 474 CSCGDYW 480
           CSC DYW
Sbjct: 613 CSCKDYW 619



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 126/278 (45%), Gaps = 43/278 (15%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G    +  +F   +E ++  +N MI G   +    E++ ++  M  E + P+  T   +L
Sbjct: 56  GNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLL 115

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN---- 170
            AC ++   + G  +H  +  +   + +  V T+L+++Y KCG + +A  VFD +     
Sbjct: 116 KACARLLDSKLGIKLHGLVVKA-GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNV 174

Query: 171 ----------------------------------DKDVVVWNSMIVGYAMHGFGKDALQL 196
                                             +KD+V W+SMI GYA +G  K+AL L
Sbjct: 175 AAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDL 234

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLL 255
           F +M     +P     +G+L ACA  G +  G    N M ++E+   P +     ++++ 
Sbjct: 235 FFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLG--TALIDMY 292

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           ++ G+++ A+++   M+ + D V+W   +    + G++
Sbjct: 293 AKCGRMDSAWEVFRGMR-KKDIVVWNAAISGLAMSGHV 329


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/479 (47%), Positives = 320/479 (66%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  ++  + +  +L+ +Y+   +V++A+KLF+       +S  +M++ Y K GE+  AR
Sbjct: 316 VKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKAR 375

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M +KD V W+ MI GYAQ     E LVLF+ M  E  +P+E   V+V+SAC  + 
Sbjct: 376 ALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLA 435

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G+WIH+YI  +  +K+N+ +GT LINMY K G ++DA  VF  + +K V  WN++I
Sbjct: 436 ALDQGKWIHAYIRKN-GLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALI 494

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G AM+G    +L+ F+EM    + P++ITF+ +L AC H GLV+EG R FN+M  E+ I
Sbjct: 495 LGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKI 554

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P ++HYGCMV+LL RAG ++EA +L+  M + PD   WG LLGAC+ +G+   GE+I  
Sbjct: 555 GPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGR 614

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+  +  + G  VLLSNIYA+ GNW  V  VR +M++ GV K PGCS IE   +VHEFL
Sbjct: 615 KLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFL 674

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  HP+++ I  ML+E+   LK EGY P T+ V  DI E++K+ +L  HSEKLA+AFG
Sbjct: 675 AGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFG 734

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LI+  P T I+IVKNLR+C DCH   KLISK   R+I++RDR+RFHHF  G+CSC DYW
Sbjct: 735 LIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  +E  +    N M+ GY Q     +A+ +++ ML   V  +  T   +  +C    A
Sbjct: 82  IFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLA 141

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
              G+ I  ++        +V +   LINMY+ CG+L DAR VFD  +  D+V WNSM+ 
Sbjct: 142 EFDGKCIQDHVLKV-GFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLA 200

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY + G  ++A  +++ M    +  S+     ++      G V E  + FN MK +  + 
Sbjct: 201 GYVLVGNVEEAKDVYDRMPERNVIASN----SMIVLFGKKGNVEEACKLFNEMKQKDLVS 256

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGAC 287
                +  +++   +    EEA  L  +M    I  D V+  ++L AC
Sbjct: 257 -----WSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSAC 299



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 42/241 (17%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA  G ++ AR +FD     D+V WN M+ GY   G   EA  ++ RM      P
Sbjct: 166 TLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM------P 219

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
                                               NV    ++I ++ K G++++A  +
Sbjct: 220 ER----------------------------------NVIASNSMIVLFGKKGNVEEACKL 245

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  KD+V W+++I  Y  +   ++AL LF EM    +   ++  + +LSAC+   +V
Sbjct: 246 FNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVV 305

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             G +  + +  +  IE  V     ++++ S   +V  A KL  +     D + W +++ 
Sbjct: 306 ITG-KLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSE-SCCLDQISWNSMIS 363

Query: 286 A 286
            
Sbjct: 364 G 364


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/483 (46%), Positives = 323/483 (66%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++F L  D +V TSL+ +Y+  G++  A ++F  +PQ  L S  +++    + G V  AR
Sbjct: 91  LRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMAR 150

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML---AEKVEPNEVTAVAVLSACG 118
            LF  M E++V+ W+ MI+GY + G   EAL LFR M       V PNE T   VL+ACG
Sbjct: 151 NLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACG 210

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVW 177
           ++GALE G+W H+YI+    + V+V +GTALI+MY+KCGS++ A  VF  +  +KDV+ W
Sbjct: 211 RLGALEHGKWAHAYIDKC-GMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAW 269

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           ++MI G AMHG  ++ + LF++M    ++P+ +TF+ +  AC H GLV+EG+ +   M +
Sbjct: 270 SAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE 329

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           +Y+I P ++HYGCMV+L  RAG+++EA+ +V  M +EPD ++WG LL   R+HG+I   E
Sbjct: 330 DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCE 389

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
              + LI     NSG YVLLSN+YA  G W+ V  VR LM+  G++K PGCS IE+   +
Sbjct: 390 LALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVL 449

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEF  GD  HP++++I+MMLEEI   LK EGYV  T+ VL D+ E+ K+ +L +HSEKLA
Sbjct: 450 HEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLA 509

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +A+G + T PGT I+IVKNLR+C DCH   K+ISK   R+I++RD NRFHHF  G CSC 
Sbjct: 510 LAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCR 569

Query: 478 DYW 480
           DYW
Sbjct: 570 DYW 572



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 113/256 (44%), Gaps = 41/256 (16%)

Query: 75  WNVMIDGYAQ-----HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           WN +I  + Q      G  +  + +F RM    V+P+  T   +L +      L  GR +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---------- 179
           H+ I     + ++  V T+LI+MYS CG+L  AR VFD +   D+  WNS          
Sbjct: 87  HAQILRF-GLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGL 145

Query: 180 ---------------------MIVGYAMHGFGKDALQLFNEMCRI---RLKPSDITFIGL 215
                                MI GY   G  K+AL LF EM  +    ++P++ T  G+
Sbjct: 146 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 205

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L+AC   G +  G ++ +   D+  +   V     ++++ ++ G VE+A  +  ++    
Sbjct: 206 LAACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNK 264

Query: 276 DSVLWGTLLGACRLHG 291
           D + W  ++    +HG
Sbjct: 265 DVMAWSAMISGLAMHG 280


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/494 (45%), Positives = 330/494 (66%), Gaps = 15/494 (3%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLT-------------T 46
            +K+    D +V ++LV +Y   G +  A  LF   + ++ +V +T              
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           M+  Y + G+  AAR+LFD M ++ VV WN MI GY+ +G   +A+ +FR M    + PN
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT V+VL A  ++G+LE G W+H Y E+S  I+++  +G+ALI+MYSKCG ++ A  VF
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDS-GIRIDDVLGSALIDMYSKCGIIEKAIHVF 332

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +R+  ++V+ W++MI G+A+HG   DA+  F +M +  ++PSD+ +I LL+AC+H GLV 
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EGRR+F+ M     +EP++EHYGCMV+LL R+G ++EA + +++M I+PD V+W  LLGA
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+ GN+ +G+++A  L+     +SG YV LSN+YA+ GNW  V+ +R  MKEK ++K+P
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDP 512

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           GCS I++   +HEF+  D  HPK+KEI  ML EI+  L+  GY P T  VL ++ E+ K+
Sbjct: 513 GCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKE 572

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           N L  HSEK+A AFGLIST PG  I+IVKNLR+C DCH+  KLISK   RKI +RDR RF
Sbjct: 573 NVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 632

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G+CSC DYW
Sbjct: 633 HHFQDGSCSCMDYW 646



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 137/280 (48%), Gaps = 49/280 (17%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQ--HGLANEALVLFRRMLAEK-VEPNEVTAVAVLSA 116
           A  +F+ M +++   WN +I G+++     A  A+ LF  M++++ VEPN  T  +VL A
Sbjct: 78  AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA 137

Query: 117 CGQIGALESGRWIH-------------------------SYIENSRN------IKVNVQV 145
           C + G ++ G+ IH                          +++++R       I+ ++ V
Sbjct: 138 CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197

Query: 146 GT-------------ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
            T              +I+ Y + G  K AR++FD++  + VV WN+MI GY+++GF KD
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+++F EM +  ++P+ +T + +L A +  G +  G  + +   ++  I         ++
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALI 316

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           ++ S+ G +E+A  +   +  E + + W  ++    +HG 
Sbjct: 317 DMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHGQ 355


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/480 (47%), Positives = 319/480 (66%), Gaps = 1/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK+  + D +V + L+ +YA  G + +  ++F+++ +  LV  T M++  AK G+V  A
Sbjct: 137 AVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFA 196

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R LFD M  KD + WN MI GY Q G + EAL LF  M  E V+ NEV+ V+VLSAC  +
Sbjct: 197 RKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHL 256

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ GRW H+YIE ++ +++ + +GTALI+MY+KCG++  A  VF  + +K+V  W+S 
Sbjct: 257 GALDQGRWAHAYIERNK-LRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSA 315

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G AM+G G+  L+LF+ M +  ++P++ITF+ +L  C+  GLV EGR+ F +M   Y 
Sbjct: 316 IGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYG 375

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP++EHYGCMV+L  RAG ++EA   +  M + P    WG LL AC+++ N+ +GE  +
Sbjct: 376 IEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELAS 435

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             ++     N G YVLLSNIYA   +WD V+ VR  M  KGV+K+PGCS IE+  +VHEF
Sbjct: 436 RKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEF 495

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             GD  HP+  EI +ML EI+  LK  GYV  T  V  DI E++K+++L +HSEK+A+AF
Sbjct: 496 FVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAF 555

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLIS  P   I+IVKNLRVC DCH   K+ISK   R+I++RDRNRFHHF +G CSC  YW
Sbjct: 556 GLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/474 (46%), Positives = 321/474 (67%), Gaps = 3/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L ++ +++D+Y + G +  A++LF  M ++  V+ TTML  YA   +  AAR + + M 
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGR 127
           +KD+V WN +I  Y Q+G  NEAL++F  + L + ++ N++T V+ LSAC Q+GALE GR
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           WIHSYI+    I++N  V +ALI+MYSKCG L+ +R VF+ V  +DV VW++MI G AMH
Sbjct: 386 WIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G G +A+ +F +M    +KP+ +TF  +  AC+H GLV+E    F+ M+  Y I P+ +H
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+V++L R+G +E+A K +  M I P + +WG LLGAC++H N+ L E     L+   
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             N G +VLLSNIYA +G W+ V+ +R  M+  G++KEPGCSSIE+   +HEFL+GD  H
Sbjct: 565 PRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 624

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQ 426
           P S+++Y  L E+   LK+ GY P+   VL  I E++ K+ SL +HSEKLA+ +GLIST+
Sbjct: 625 PMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTE 684

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I+++KNLRVC DCH+V KLIS+   R+I++RDR RFHHF NG CSC D+W
Sbjct: 685 APKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 173/328 (52%), Gaps = 39/328 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++ CY   G++ +A  +F  ++EKDVV WN MI+G+ Q G  ++AL LF++M +E V+
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            + VT V VLSAC +I  LE GR + SYIE +R + VN+ +  A+++MY+KCGS++DA+ 
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR-VNVNLTLANAMLDMYTKCGSIEDAKR 288

Query: 165 VFDRVNDKDVVVWNSMIVGYAM-------------------------------HGFGKDA 193
           +FD + +KD V W +M+ GYA+                               +G   +A
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348

Query: 194 LQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           L +F+E+  +  +K + IT +  LSACA  G +  GR   + +K ++ I         ++
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALI 407

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-S 311
           ++ S+ G +E++ ++   ++ + D  +W  ++G   +HG    G +  +       AN  
Sbjct: 408 HMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVK 463

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKE 339
              V  +N++ A  +   V    +L  +
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQ 491



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 17/262 (6%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
            D  SA KLFA     S  SL               AR +FD++ + +   WN +I  YA
Sbjct: 60  SDPYSASKLFAMAALSSFASLEY-------------ARKVFDEIPKPNSFAWNTLIRAYA 106

Query: 84  QHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                  ++  F  M++E +  PN+ T   ++ A  ++ +L  G+ +H     S  +  +
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA-VGSD 165

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V  +LI+ Y  CG L  A  VF  + +KDVV WNSMI G+   G    AL+LF +M  
Sbjct: 166 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 225

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             +K S +T +G+LSACA    +  GR+  + + +E  +   +     M+++ ++ G +E
Sbjct: 226 EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI-EENRVNVNLTLANAMLDMYTKCGSIE 284

Query: 263 EAYKLVMDMKIEPDSVLWGTLL 284
           +A +L   M+ E D+V W T+L
Sbjct: 285 DAKRLFDAME-EKDNVTWTTML 305


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/479 (46%), Positives = 327/479 (68%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     ++Y + SL+++Y++ GD+ SA  LF  + QR  VS  +M+  Y K GE+  A 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAY 204

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+ M E++++ W  MI G    G   EAL LF RM    ++ + V  V+ L AC  +G
Sbjct: 205 EIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLG 264

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ G+WIH+YI+    I+++  +G  LI+MY+KCG L++A  VF ++ +K V VW +MI
Sbjct: 265 VLDQGKWIHAYIKK-HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI 323

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA+HG G++AL+ F +M    ++P+ +TF G+L+AC+HAGLV+E +  F +M+  +  
Sbjct: 324 SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P +EHYGCMV+LL RAG ++EA +L+ +M ++P++ +WG LL AC +HGN+ LG++I +
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGK 443

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI  +  + G Y+ L++I+AA G W+  ARVR  MKE+GV K PGCS I ++   HEFL
Sbjct: 444 ILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFL 503

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  HP+ KEI  MLE+I   L+ EGY P+   +L D+ +K+K+ ++  HSEKLAV FG
Sbjct: 504 AGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFG 563

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIST+PG +I+IVKNLRVC DCH V KLISK   R+I+MRDR RFH F +G C+CGDYW
Sbjct: 564 LISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 144/319 (45%), Gaps = 45/319 (14%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G +L    +   +P   L++           G +A AR +FD +   +   WN MI GY+
Sbjct: 39  GQMLKTGLILDEIPASKLLAFCA----SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
                 EAL+L+  ML   V  N  T   +L AC  + A E  + IH++I         +
Sbjct: 95  NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHI-IKMGFGSEI 153

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM----------------- 186
               +L+N+YSK G +K ARL+FD+V+ +D V WNSMI GY                   
Sbjct: 154 YTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPER 213

Query: 187 --------------HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
                          G  K+AL LF+ M    +K  ++  +  L ACA  G++++G+   
Sbjct: 214 NIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIH 273

Query: 233 NTMKD-EYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
             +K  E  I+P +   GC ++++ ++ G +EEA ++   M+ E    +W  ++    +H
Sbjct: 274 AYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIH 329

Query: 291 GNIALGEKIAEYLISQNLA 309
           G    G +  E+ +    A
Sbjct: 330 GR---GREALEWFMKMQTA 345


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/431 (49%), Positives = 308/431 (71%), Gaps = 1/431 (0%)

Query: 50  CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
           C   +G +  AR +FD+M + D V W+ MI GY + G +++A+ LFR M  + V P+E+T
Sbjct: 58  CRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEIT 117

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
            V+VLSAC  +GALE G+W+ SY+E  R ++ NV++  ALI+M++KCG +  A  +F  +
Sbjct: 118 MVSVLSACTGLGALELGKWVESYVEKER-VQKNVELSNALIDMFAKCGDVDKATNLFRSM 176

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
            ++++V W S+I G AMHG G +A+ +F EM R  + P D+ FIGLLSAC+H+GLV++G+
Sbjct: 177 RERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGK 236

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
           R+F++M+ +++I PK+EHYGCMV++L RAG V+EA K V +M I+P+ V+W TL+ ACR 
Sbjct: 237 RYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRA 296

Query: 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           HG + LGEKI   LI     +   YVLLSNIYA + +W+   R+R  M  KG++K PG +
Sbjct: 297 HGELKLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGST 356

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            IEL N+++EF+AGD  H +SKEIY M++E+   +K  GY+P T  VL DI ++ K+++L
Sbjct: 357 MIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTL 416

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEKLA+AF L++T PGT I+IVKNLRVC DCH+  K ISK   R+I++RDRNRFHHF
Sbjct: 417 NRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHF 476

Query: 470 VNGTCSCGDYW 480
            NG CSC D+W
Sbjct: 477 KNGLCSCRDFW 487



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 9/199 (4%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKC 156
           ML  K  PN+ T   VL AC  IG L  G+ +H S ++     +VNVQ    L++MY  C
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQ--NTLVHMYCCC 58

Query: 157 ----GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
               G ++ AR VFD +   D V W++MI GY   G   DA+ LF EM    + P +IT 
Sbjct: 59  RGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITM 118

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +LSAC   G +  G ++  +  ++  ++  VE    ++++ ++ G V++A  L   M+
Sbjct: 119 VSVLSACTGLGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR 177

Query: 273 IEPDSVLWGTLLGACRLHG 291
            E + V W +++G   +HG
Sbjct: 178 -ERNIVSWTSVIGGLAMHG 195



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q+++     ++  +AK G+V  A  LF  M E+++V W  +I G A HG   EA+ +F  
Sbjct: 147 QKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEE 206

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   V P++V  + +LSAC   G ++ G+     +    +I   ++    +++M  + G
Sbjct: 207 MVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAG 266

Query: 158 SLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
            +K+A + V +   D + VVW ++I     HG
Sbjct: 267 LVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/479 (46%), Positives = 327/479 (68%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     ++Y + SL+++Y++ GD+ SA  LF  + QR  VS  +M+  Y K GE+  A 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAY 204

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+ M E++++ W  MI G    G   EAL LF RM    ++ + V  V+ L AC  +G
Sbjct: 205 EIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLG 264

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ G+WIH+YI+    I+++  +G  LI+MY+KCG L++A  VF ++ +K V VW +MI
Sbjct: 265 VLDQGKWIHAYIKK-HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI 323

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA+HG G++AL+ F +M    ++P+ +TF G+L+AC+HAGLV+E +  F +M+  +  
Sbjct: 324 SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P +EHYGCMV+LL RAG ++EA +L+ +M ++P++ +WG LL AC +HGN+ LG++I +
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGK 443

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI  +  + G Y+ L++I+AA G W+  ARVR  MKE+GV K PGCS I ++   HEFL
Sbjct: 444 ILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFL 503

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  HP+ KEI  MLE+I   L+ EGY P+   +L D+ +K+K+ ++  HSEKLAV FG
Sbjct: 504 AGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFG 563

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIST+PG +I+IVKNLRVC DCH V KLISK   R+I+MRDR RFH F +G C+CGDYW
Sbjct: 564 LISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 145/319 (45%), Gaps = 45/319 (14%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G +L    +   +P   L++           G +A AR +FD +   +   WN MI GY+
Sbjct: 39  GQMLKTGLILDEIPASKLLAFCA----SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
                 EAL+L+  ML   V  N  T   +L AC  + ALE  + IH++I         +
Sbjct: 95  NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHI-IKMGFGSEI 153

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM----------------- 186
               +L+N+YSK G +K ARL+FD+V+ +D V WNSMI GY                   
Sbjct: 154 YTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPER 213

Query: 187 --------------HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
                          G  K+AL LF+ M    +K  ++  +  L ACA  G++++G+   
Sbjct: 214 NIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIH 273

Query: 233 NTMKD-EYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
             +K  E  I+P +   GC ++++ ++ G +EEA ++   M+ E    +W  ++    +H
Sbjct: 274 AYIKKHEIEIDPIL---GCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTAMISGYAIH 329

Query: 291 GNIALGEKIAEYLISQNLA 309
           G    G +  E+ +    A
Sbjct: 330 GR---GREALEWFMKMQTA 345


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/484 (46%), Positives = 326/484 (67%), Gaps = 8/484 (1%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F LDKD +V TSL+++Y+  GD+ SA ++F     + L +  +++  YAK G +  AR L
Sbjct: 90  FGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKL 149

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-----VEPNEVTAVAVLSACG 118
           FD+M E++V+ W+ +I+GY   G   EAL LFR M   K     V PN+ T   VLSACG
Sbjct: 150 FDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACG 209

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVW 177
           ++GALE G+W+HSYI+    +++++ +GTALI+MY+KCGSL+ A+ VFD + + KDV  +
Sbjct: 210 RLGALEQGKWVHSYIDK-YGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAY 268

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           ++MI   AM+G   +  Q+F+EM     + P+ +TF+G+L AC H GL+N+G+ +F  M 
Sbjct: 269 SAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMT 328

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +E+ I P ++HYGCMV+L  R+G ++EA   +  M +EPD ++WG+LL   R+ G+I   
Sbjct: 329 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 388

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E   + LI  +  NSG YVLLSN+YA  G W  V R+R  M+ KG++K PGCS +E+   
Sbjct: 389 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGV 448

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEF+ GD    +S+ IY MLEEI   L+  GYV  T+ VL D+ EK K+ +L  HSEKL
Sbjct: 449 VHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKL 508

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AF L+ T+PGT ++I+KNLR+C DCH V K+ISK   R+I++RD NRFHHF +G+CSC
Sbjct: 509 AIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSC 568

Query: 477 GDYW 480
            D+W
Sbjct: 569 RDFW 572



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K+ ++ D+ + T+L+D+YA+ G +  A+++F  +  +                       
Sbjct: 226 KYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSK----------------------- 262

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIG 121
                  KDV  ++ MI   A +GL +E   +F  M  +  + PN VT V +L AC   G
Sbjct: 263 -------KDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRG 315

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            +  G+     +     I  ++Q    ++++Y + G +K+A   +     + DV++W S+
Sbjct: 316 LINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSL 375

Query: 181 IVGYAMHG 188
           + G  M G
Sbjct: 376 LSGSRMLG 383


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/435 (49%), Positives = 305/435 (70%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y+  G V  AR +FD M ++D+V +N MI GYA H L  EAL LF R+  E ++P
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP 528

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           ++VT + +L+AC   G+LE  R IH+ +        +  VG AL++ Y+KCGS  DA +V
Sbjct: 529 DKVTYINMLNACANSGSLEWAREIHTLVRKG-GFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+++  ++V+ WN++I G A HG G+DALQLF  M    +KP  +TF+ LLSAC+HAGL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGRR+F +M  ++AI P +EHYGCMV+LL RAGQ++EA  L+  M  + ++ +WG LLG
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+HGN+ + E+ AE  +  +L N+  YV LS++YAA G WD  A++R LM+++GV KE
Sbjct: 708 ACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 767

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S I++ +K+H F+A D  HP+S++IY  L+ +   +K +GYVP T+ V+HD+ E +K
Sbjct: 768 PGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEK 827

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +N++  HSE+LA+A+GLIST PGT I I KNLRVCPDCH   K ISK   R+I+ RD NR
Sbjct: 828 ENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNR 887

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G CSCGDYW
Sbjct: 888 FHHFKDGVCSCGDYW 902



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/246 (36%), Positives = 143/246 (58%), Gaps = 3/246 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +++ Y++ G +  AR++FD M  KDV+ W  MI G A+ G   EAL +++ M    VEP
Sbjct: 368 ALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEP 427

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT  ++L+AC    ALE GR IH  +  +  +  +  VG  L+NMYS CGS+KDAR V
Sbjct: 428 NRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMCGSVKDARQV 486

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR+  +D+V +N+MI GYA H  GK+AL+LF+ +    LKP  +T+I +L+ACA++G +
Sbjct: 487 FDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 546

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            E  R  +T+  +            +V+  ++ G   +A  +V +   + + + W  ++G
Sbjct: 547 -EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDA-SIVFEKMTKRNVISWNAIIG 604

Query: 286 ACRLHG 291
               HG
Sbjct: 605 GSAQHG 610



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 163/298 (54%), Gaps = 4/298 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G     R +F+ +  +D++ WN MI G A+ G   EA  ++ +M  E V 
Sbjct: 266 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM 325

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN++T V +L+AC    AL  G+ IHS +  +     ++ V  ALI+MYS+CGS+KDARL
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGVQNALISMYSRCGSIKDARL 384

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++  KDV+ W +MI G A  GFG +AL ++ EM +  ++P+ +T+  +L+AC+    
Sbjct: 385 VFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAA 444

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  GRR    +  E  +         +VN+ S  G V++A + V D  I+ D V +  ++
Sbjct: 445 LEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDA-RQVFDRMIQRDIVAYNAMI 502

Query: 285 GACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           G    H       K+ + L  + L  +  TY+ + N  A  G+ +    + TL+++ G
Sbjct: 503 GGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 151/240 (62%), Gaps = 5/240 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK G +  AR +FD ME+K VV W + I GYA  G +  A  +F++M  E V PN
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPN 226

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T ++VL+A     AL+ G+ +HS I N+ + + +  VGTAL+ MY+KCGS KD R VF
Sbjct: 227 RITYISVLNAFSSPAALKWGKAVHSRILNAGH-ESDTAVGTALVKMYAKCGSYKDCRQVF 285

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +++ ++D++ WN+MI G A  G+ ++A +++N+M R  + P+ IT++ LL+AC ++  ++
Sbjct: 286 EKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALH 345

Query: 227 EGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G+   + + K  +  +  V++   ++++ SR G +++A +LV D  +  D + W  ++G
Sbjct: 346 WGKEIHSRVAKAGFTSDIGVQN--ALISMYSRCGSIKDA-RLVFDKMVRKDVISWTAMIG 402



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEAL 92
           T+P +  V+   ++  Y + G +  AR ++  +   E+ V  WN M+ GY Q+G   +AL
Sbjct: 54  TVPDQYTVN--ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKAL 111

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
            L R+M    + P+  T ++ LS+C   GALE GR IH +      +  +V+V   ++NM
Sbjct: 112 KLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIH-FQAMQAGLLFDVKVANCILNM 170

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+KCGS+++AR VFD++  K VV W   I GYA  G  + A ++F +M +  + P+ IT+
Sbjct: 171 YAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITY 230

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           I +L+A +    +  G+   + + +    E        +V + ++ G  ++  + V +  
Sbjct: 231 ISVLNAFSSPAALKWGKAVHSRILNA-GHESDTAVGTALVKMYAKCGSYKDC-RQVFEKL 288

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSN 319
           +  D + W T++G     G      ++   +  +  + N  TYV+L N
Sbjct: 289 VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 125/243 (51%), Gaps = 20/243 (8%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           A+ + + +  +  + N    + +L  C ++  L +GR +H +I   R +     V  ALI
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTV-NALI 65

Query: 151 NMYSKCGSLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           NMY +CGS+++AR V+ +++  ++ V  WN+M+VGY  +G+ + AL+L  +M +  L P 
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPD 125

Query: 209 DITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
             T +  LS+C   G +  GR   F  M+     + KV +  C++N+ ++ G +EEA + 
Sbjct: 126 RTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVAN--CILNMYAKCGSIEEA-RE 182

Query: 268 VMDMKIEPDSVL-WGTLLGACRLHGNIALGEKIAEYLISQNLANSG------TYVLLSNI 320
           V D K+E  SV+ W   +G     G    G     + I Q +   G      TY+ + N 
Sbjct: 183 VFD-KMEKKSVVSWTITIG-----GYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236

Query: 321 YAA 323
           +++
Sbjct: 237 FSS 239


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/466 (50%), Positives = 320/466 (68%), Gaps = 2/466 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D+    ++++ YA  G +  A++LF  MP+R+LVS  +ML+ + K G V  A  LF +M
Sbjct: 95  RDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEM 154

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             +DVV WN M+  YAQ G  NEAL LF +M A  V+P E T V++LSAC  +GAL+ G 
Sbjct: 155 PCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL 214

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H+YI ++R I+VN  VGTAL++MY+KCG +  A  VF+ +  KDV+ WN++I G A+H
Sbjct: 215 HLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 273

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  K+A QLF EM    ++P+DITF+ +LSAC+HAG+V+EG++  + M   Y IEPKVEH
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 333

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+++LL+RAG +EEA +L+  M +EP+    G LLG CR+HGN  LGE + + LI+  
Sbjct: 334 YDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 393

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +SG Y+LLSNIYAA   WD   +VR LMK  G+ K PG S IEL   VH F+AGD  H
Sbjct: 394 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 453

Query: 368 PKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           P+S +IY  L EI+  LK A GY   T  VL D+ E+ K+++L VHSEKLA+A+GL+   
Sbjct: 454 PESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLD 513

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
              +I+IVKNLRVC DCH V KLISK  GR+I++RDRNRFHHF +G
Sbjct: 514 SKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/478 (47%), Positives = 322/478 (67%), Gaps = 1/478 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K     +L++   +++LY   G++  A  LF  MPQR  V+   ++   AK+G++  A  
Sbjct: 38  KLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYG 97

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F  M  K+V  W  MI G+ Q G  NEA+ LF ++  E V PNEVT V+VL+AC  +G 
Sbjct: 98  FFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGD 157

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ GR +H Y   S   K NV V   LI+MY KCG L++AR VF  + ++ VV W++MI 
Sbjct: 158 LDLGRIVHEYSTKS-GFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIA 216

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G AMHG  ++AL LF+EM ++ +KP+ +TFIGLL AC+H GL++EGRRFF +M  +Y + 
Sbjct: 217 GLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVI 276

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P++EHYGC+V+L SRAG +EEA++ ++ M I+P+ V+WG LLG C++H NI L E+  ++
Sbjct: 277 PQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKH 336

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L   +  N G YV++SNIYA    W+  ARVR LMK++GV+K  G SSI ++  VHEF+A
Sbjct: 337 LSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVA 396

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP++++I  + +++   +K  GY P+T +VL D+ EK+K+  L  HSEKLAV FGL
Sbjct: 397 GDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGL 456

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++T  GT I+I+KNLRVC DCHA  K+IS    R+I++RDRNRFH F +G CSC D+W
Sbjct: 457 MTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 34/221 (15%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V P+  T   VL AC ++  + +G+ IH   +       N+ +   ++N+Y  CG + DA
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQK-LGFGSNLFLQNMILNLYGLCGEMGDA 64

Query: 163 RLVFDRVNDKDVVVWN-------------------------------SMIVGYAMHGFGK 191
            L+F+++  +D V WN                               SMI G+   G   
Sbjct: 65  MLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPN 124

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+ LF ++    ++P+++T + +L+ACA  G ++ G R  +    +   +  V     +
Sbjct: 125 EAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHVCNTL 183

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +++  + G +E A ++  +M+ E   V W  ++    +HG 
Sbjct: 184 IDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQ 223


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/480 (46%), Positives = 323/480 (67%), Gaps = 5/480 (1%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAARVL 63
           S+D ++ + +++VD+YA+ G +  AE++F+TM   +S  + ++M+  YA+ GE+  AR L
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F+ M E+DV+ W  MI GY+Q G  +EAL LF+ M A  ++P+EVT VAVLSAC ++GA 
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 124 ESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSM 180
           + G R  H YIEN      N  +  A+++MY+KCGS+  A  +F RV  N K   V+NSM
Sbjct: 364 DLGKRLYHQYIENGV-FNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 422

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A HG G+ A+ +F E+    LKP ++TF+G+L AC H+GL+ EG++ F +M + Y 
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P++EHYGCMV+LL R G +EEAY LV  M  E +SV+W  LL ACR HGN+ +GE   
Sbjct: 483 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAG 542

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L+     +   YVLLSNI A    W+   +VR +M++ G++K PG S IEL   +H F
Sbjct: 543 QKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRF 602

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HP+ KEI +ML+++   LK+ GYVP T  V+ DI E++K++ +  HSEKLA+AF
Sbjct: 603 VASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAF 662

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+   P  +I+IVKNLR+C DCH  FKL+S+  GR+I +RD  RFHHF NG+CSC D+W
Sbjct: 663 GLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 159/364 (43%), Gaps = 71/364 (19%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S+  L +  +    +  +  +R+LF  ++  ++  WN MI GY++     EA+VL+  M+
Sbjct: 43  SISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMI 102

Query: 100 AEKV-EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           A+ +  PN  T   +L++C ++ +LE G  +HS+I      + ++ V  ALI++YS  G+
Sbjct: 103 AKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIK-HGFESDLFVRNALIHLYSVFGN 161

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L  AR +FD    +D+V +N+MI GYA     + AL LF EM    + P + TF+ L S 
Sbjct: 162 LNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSV 221

Query: 219 C-------------------------------------AHAGLVNEGRRFFNTMKDEYAI 241
           C                                     A  GL+N   R F+TM    + 
Sbjct: 222 CSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSA 281

Query: 242 ---------------------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-- 272
                                      E  V  +  M++  S+AGQ  EA +L  +M+  
Sbjct: 282 AAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEAL 341

Query: 273 -IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS--NIYAAIGNWDG 329
            I+PD V    +L AC   G   LG+++    I   + N  T +  +  ++YA  G+ D 
Sbjct: 342 GIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDS 401

Query: 330 VARV 333
              +
Sbjct: 402 ALEI 405



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 164/373 (43%), Gaps = 100/373 (26%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + DL+V  +L+ LY+  G++  A  LF     R LVS  TM+  YA+  +  +A 
Sbjct: 138 IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 197

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF +M+   ++                               P+E T VA+ S C  + 
Sbjct: 198 CLFGEMQNSGIL-------------------------------PDEFTFVALFSVCSVLN 226

Query: 122 ALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSK------------------------- 155
               G+ IH+ + +N R+I  N+ + +A+++MY+K                         
Sbjct: 227 EPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSS 286

Query: 156 -------CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
                  CG +  AR +F+ ++++DV+ W +MI GY+  G   +AL+LF EM  + +KP 
Sbjct: 287 MVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPD 346

Query: 209 DITFIGLLSACAHAGLVNEGRRFFN----------------TMKDEYA----IEPKVE-- 246
           ++T + +LSACA  G  + G+R ++                 + D YA    I+  +E  
Sbjct: 347 EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 406

Query: 247 -----------HYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGN 292
                       +  M+  L++ G  E A   ++ ++   ++PD V +  +L AC   G 
Sbjct: 407 RRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGL 466

Query: 293 IALGEKIAEYLIS 305
           I  G+K+ E + +
Sbjct: 467 IEEGKKLFESMFN 479


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/484 (46%), Positives = 318/484 (65%), Gaps = 5/484 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEV 57
           +K ++  D     +++   AR G +    ++ + +      S    +  ++  Y+K GE+
Sbjct: 187 MKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEM 246

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A  LF  +  KDV+ WN++I GY    L  EAL+LF+ ML     PN+VT +++L AC
Sbjct: 247 ETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHAC 306

Query: 118 GQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
             +GA++ GRWIH YI+   + +     + T+LI+MYSKCG ++ A  VF+ +  K +  
Sbjct: 307 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA 366

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WN+MI G+AMHG    A  +F+ M +  +KP DITF+GLLSAC+HAG+++ GR  F +M 
Sbjct: 367 WNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMT 426

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
             Y I PK+EHYGCM++LL  +G  +EA +++  M +EPD V+W +LL AC++HGN+ LG
Sbjct: 427 HNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELG 486

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           EK A+ L      N G+YVLLSNIYA  G W+ VAR+R L+ +KG++K PGCSSIE+ + 
Sbjct: 487 EKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSV 546

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E+ K+ +L  HSEKL
Sbjct: 547 VHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKL 606

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AFGLIST+P T + IVKNLRVC +CH   KLISK   R+I+ RDR RFHHF +G CSC
Sbjct: 607 AIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 666

Query: 477 GDYW 480
            DYW
Sbjct: 667 NDYW 670



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 180/361 (49%), Gaps = 51/361 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + DLYV TSL+ +Y +   +  A K+F     R +VS T ++T YA +G + +AR
Sbjct: 90  LKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESAR 149

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN MI GY + G   EAL LF+ M+   V P+E T V V+SA  + G
Sbjct: 150 NMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSG 209

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I +      N+++  ALI+ YSKCG ++ A  +F  ++ KDV+ WN +I
Sbjct: 210 SIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILI 268

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 269 GGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKG 328

Query: 230 -------------------------RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
                                    + FN+M     +   +  +  M+   +  G+   A
Sbjct: 329 VTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-----LHKSLPAWNAMIFGFAMHGRANAA 383

Query: 265 YKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVL 316
           + +   M+   I+PD + +  LL AC   G + LG  I       Y I+  L + G  + 
Sbjct: 384 FDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMID 443

Query: 317 L 317
           L
Sbjct: 444 L 444



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 125/254 (49%), Gaps = 32/254 (12%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M  G+A       AL L+  M++  + PN  T   +L +C ++ A
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 123 LESGRWIHS--------------------YIEN----------SRNIKVNVQVGTALINM 152
            + G  IH                     Y++N           R+   +V   TAL+  
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+  G ++ AR +FD +  KDVV WN+MI GY   G  K+AL+LF EM +  ++P + T 
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + ++SA A +G +  GR+  + + D +     ++    +++  S+ G++E A  L + + 
Sbjct: 199 VTVISASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETACGLFLGLS 257

Query: 273 IEPDSVLWGTLLGA 286
            + D + W  L+G 
Sbjct: 258 YK-DVISWNILIGG 270



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 95/210 (45%), Gaps = 18/210 (8%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + + ++++WN+M  G+A+      AL+L+  M  + L P+  TF  LL +CA    
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG +   + +K  Y ++  V  +  ++++  +  ++E+A+K V D     D V +  L
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYV--HTSLISMYVQNERLEDAHK-VFDRSSHRDVVSYTAL 135

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +      G I     + + +  +++ +    +   + Y   GN+     +   M +  V+
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMI---SGYVETGNYKEALELFKEMMKTNVR 192

Query: 344 KEPGC-----------SSIELSNKVHEFLA 362
            +               SIEL  +VH ++A
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIA 222


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/440 (49%), Positives = 311/440 (70%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+SLT++   YAK G V  AR+ F+ +E   ++ WN MI GY ++G A EA+ LFR M +
Sbjct: 312 LISLTSL---YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKS 368

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + + P+ +T  + ++AC QIG+LE  RW+  YI  S   + +V V T+LI+ Y+KCGS+ 
Sbjct: 369 KNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSE-FRNDVIVNTSLIDTYAKCGSVD 427

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDR+ DKDVVVW++M+VGY +HG G++++ LF+ M +  + P+D+TF+GLL+AC 
Sbjct: 428 MARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACK 487

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           ++GLV EG   F+ M+D Y IEP+ +HY C+V+LL RAG ++ AY  VM+M IEP   +W
Sbjct: 488 NSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVW 546

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC++H ++ LGE  AE L S +  N+G YV LSN+YA+   WD VA+VR LM+EK
Sbjct: 547 GALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREK 606

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K  G S IE++ K+  F AGD  HP+SKEI+  +E++   LK  G+VP T+ VLHD+
Sbjct: 607 GLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDL 666

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
             ++ + +L  HSE+LA+A+GLIST PGT+++I KNLR C +CHA  KLISK   R+I++
Sbjct: 667 NYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVV 726

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSCGDYW
Sbjct: 727 RDACRFHHFKDGACSCGDYW 746



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 165/377 (43%), Gaps = 54/377 (14%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           SL  D    T L  +YA         KL  T  Q     +  ++   +  GEV+ AR LF
Sbjct: 80  SLIDDSIHKTHLNQIYA---------KLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLF 130

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D   + DV  WN ++  Y++HG    A+ ++ RM    V P+  +   VL AC  + ALE
Sbjct: 131 DKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALE 190

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR +H  I      + +V V   L+ +Y+KCG +  A  VF R+ D+ +V W S+I GY
Sbjct: 191 MGRRVHGQIFR-HGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGY 249

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA---------------C---------- 219
           A +G   +AL++F+EM +  ++P  I  + +L A               C          
Sbjct: 250 AQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEF 309

Query: 220 ----------AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                     A  G V   R FFN +++     P +  +  M++   + G  EEA +L  
Sbjct: 310 DLLISLTSLYAKCGHVMVARLFFNQVEN-----PSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIG 325
            MK   I PDS+   + + AC   G++ L   + EY+      N       L + YA  G
Sbjct: 365 LMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCG 424

Query: 326 NWDGVARVRTLMKEKGV 342
           + D    V   + +K V
Sbjct: 425 SVDMARFVFDRIPDKDV 441


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/438 (49%), Positives = 303/438 (69%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y+K GE+  A  LF+ +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 304 VNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSKCGSLKDA 162
            PN+VT +++L AC  +GA++ GRWIH YI+       N   + T+LI+MY+KCG ++ A
Sbjct: 364 RPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAA 423

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  K +  WN+MI G+AMHG    A  +F+ M +I ++P DITF+GLLSAC+ +
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRS 483

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F TM  +Y I PK+EHYGCM++LL  +G  +EA +++ +M++EPD V+W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCS 543

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++ GN+ LGE  A+ LI     N G YVLLSNIYA  G W+ VA++R L+ +KG+
Sbjct: 544 LLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGM 603

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC DYW
Sbjct: 724 RTRFHHFRDGVCSCNDYW 741



 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 189/356 (53%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DL+V TSL+ +Y + G +  A K+F   P R +VS T ++  YA +G + +A+
Sbjct: 161 LKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQ 220

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD++  KDVV WN MI GYA+ G   EAL LF+ M+   + P+E T V V+SAC Q G
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSG 280

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I++      N+++  +L+++YSKCG L+ A  +F+ +  KDV+ WN++I
Sbjct: 281 SIELGRQVHSWIDD-HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLI 339

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R   +P+D+T + +L ACAH G ++ GR            
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKS 399

Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+ + A+ +  
Sbjct: 400 ATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFS 459

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD + +  LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 460 RMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDL 515



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 131/255 (51%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M  G+A       AL L+  M++  + PN  T   +L +C +  A
Sbjct: 90  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 149

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------------- 168
            + G+ IH ++       +++ V T+LI++Y + G L+DAR VFDR              
Sbjct: 150 FKEGQQIHGHVLK-LGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIK 208

Query: 169 -----------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN+MI GYA  G  K+AL+LF EM +  ++P + T
Sbjct: 209 GYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDEST 268

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + ++SACA +G +  GR+  + + D++     ++    +++L S+ G++E A  L   +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHSWI-DDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL 327

Query: 272 KIEPDSVLWGTLLGA 286
            +  D + W TL+G 
Sbjct: 328 -LYKDVISWNTLIGG 341



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 101/209 (48%), Gaps = 18/209 (8%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + + ++++WN+M  G+A+      AL+L+  M  + L P+  TF  LL +CA +  
Sbjct: 90  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 149

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG++   + +K  Y ++  V  +  ++++  + G++E+A K V D     D V +  L
Sbjct: 150 FKEGQQIHGHVLKLGYDLDLFV--HTSLISVYVQNGRLEDARK-VFDRSPHRDVVSYTAL 206

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +      G I   +K+ + +  +++ +    +   + YA  GN+     +   M +  ++
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMI---SGYAETGNYKEALELFKEMMKTNIR 263

Query: 344 KE--------PGCS---SIELSNKVHEFL 361
            +          C+   SIEL  +VH ++
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHSWI 292


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 322/475 (67%), Gaps = 1/475 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++ +L +  +++D+YA  G++ SA  +F +M  R ++S TT+++ +   GE+  AR  FD
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 330

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M EKD V W  MIDGY +     EAL LFR M A  V+P+E T V+VL+AC  +GALE 
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 390

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G WI +YI+ ++ IK ++ V  ALI+MY KCG +  A  +F  ++ +D   W +MIVG A
Sbjct: 391 GEWIRTYIDRNK-IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLA 449

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           ++G G+ AL +F+ M +  + P +IT+IG+LSAC H GLV++GR++F  M  ++ IEP +
Sbjct: 450 VNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNI 509

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
            HYGC+V+LL+RAG+++EAY+++ +M I+ +S++WG LL  CR++    + E + + ++ 
Sbjct: 510 AHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE 569

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               N   YVLL NIYAA   W+ +  +R +M +KG++K PGCS IE++ +VHEF+AGD 
Sbjct: 570 LEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDR 629

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP++K I   L+++   LK  GY P    V  DI E+ K+NS+  HSEKLA+AFGLI++
Sbjct: 630 SHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINS 689

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            PG +I+I KNLR+C DCH + KL+SK   R++++RDR RFHHF +G CSC DYW
Sbjct: 690 PPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 148/304 (48%), Gaps = 37/304 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y   G++  AR +FD   + DV+ WN++I  Y + G   E+  LF  M  ++V 
Sbjct: 178 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 237

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD--- 161
           P  VT V VLSAC ++  L +G+ +HSY++N + ++ N+ +  A+I+MY+ CG +     
Sbjct: 238 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK-VESNLVLENAMIDMYADCGEMDSALG 296

Query: 162 ----------------------------ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                                       AR  FD++ +KD V W +MI GY      K+A
Sbjct: 297 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 356

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L+LF  M    +KP + T + +L+ACAH G +  G  +  T  D   I+  +     +++
Sbjct: 357 LELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALID 415

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG--ACRLHGNIALGEKIAEYLISQNLANS 311
           +  + G V++A  +  +M  + D   W  ++   A   HG  AL +  +  L +  L + 
Sbjct: 416 MYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKAL-DMFSNMLKASILPDE 473

Query: 312 GTYV 315
            TY+
Sbjct: 474 ITYI 477



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 8/248 (3%)

Query: 50  CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
           C  + G+   AR LFD++ E ++  WN MI GY++       + L+  ML   V+P+  T
Sbjct: 82  CTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT 141

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
              +     +  ALE GR +H ++     ++ NV V TAL+ MY  CG L  AR VFD  
Sbjct: 142 FPFLFKGFTRDIALEYGRQLHGHVL-KHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 200

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
              DV+ WN +I  Y   G  +++ +LF  M   ++ P+ +T + +LSAC+    +  G+
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 260

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
           +  + +K+   +E  +     M+++ +  G+++ A  +   M    D + W T++     
Sbjct: 261 KVHSYVKN-CKVESNLVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVS---- 314

Query: 290 HGNIALGE 297
            G   LGE
Sbjct: 315 -GFTNLGE 321



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G  + AR +FD + + ++ +WN+MI GY+   F +  + L+ EM R  +KP   TF  L 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 217 SACAHAGLVNEGRRF----------------------------FNTMKDEYAIEPKVE-- 246
                   +  GR+                              +T +  + + PK +  
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 247 HYGCMVNLLSRAGQVEEAYKLVM---DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            +  +++  ++ G+ EE+ +L +   D ++ P +V    +L AC    ++  G+K+  Y+
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 266

Query: 304 ISQNLANSGTYVL---LSNIYAAIGNWDGVARVRTLMKEKGV 342
             +N       VL   + ++YA  G  D    +   M  + +
Sbjct: 267 --KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI 306


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 322/475 (67%), Gaps = 1/475 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++ +L +  +++D+YA  G++ SA  +F +M  R ++S TT+++ +   GE+  AR  FD
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 309

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M EKD V W  MIDGY +     EAL LFR M A  V+P+E T V+VL+AC  +GALE 
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 369

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G WI +YI+ ++ IK ++ V  ALI+MY KCG +  A  +F  ++ +D   W +MIVG A
Sbjct: 370 GEWIRTYIDRNK-IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLA 428

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           ++G G+ AL +F+ M +  + P +IT+IG+LSAC H GLV++GR++F  M  ++ IEP +
Sbjct: 429 VNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNI 488

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
            HYGC+V+LL+RAG+++EAY+++ +M I+ +S++WG LL  CR++    + E + + ++ 
Sbjct: 489 AHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE 548

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               N   YVLL NIYAA   W+ +  +R +M +KG++K PGCS IE++ +VHEF+AGD 
Sbjct: 549 LEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDR 608

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP++K I   L+++   LK  GY P    V  DI E+ K+NS+  HSEKLA+AFGLI++
Sbjct: 609 SHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINS 668

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            PG +I+I KNLR+C DCH + KL+SK   R++++RDR RFHHF +G CSC DYW
Sbjct: 669 PPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 148/304 (48%), Gaps = 37/304 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y   G++  AR +FD   + DV+ WN++I  Y + G   E+  LF  M  ++V 
Sbjct: 157 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 216

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD--- 161
           P  VT V VLSAC ++  L +G+ +HSY++N + ++ N+ +  A+I+MY+ CG +     
Sbjct: 217 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK-VESNLVLENAMIDMYADCGEMDSALG 275

Query: 162 ----------------------------ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                                       AR  FD++ +KD V W +MI GY      K+A
Sbjct: 276 IFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEA 335

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L+LF  M    +KP + T + +L+ACAH G +  G  +  T  D   I+  +     +++
Sbjct: 336 LELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALID 394

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG--ACRLHGNIALGEKIAEYLISQNLANS 311
           +  + G V++A  +  +M  + D   W  ++   A   HG  AL +  +  L +  L + 
Sbjct: 395 MYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGLAVNGHGEKAL-DMFSNMLKASILPDE 452

Query: 312 GTYV 315
            TY+
Sbjct: 453 ITYI 456



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 8/248 (3%)

Query: 50  CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
           C  + G+   AR LFD++ E ++  WN MI GY++       + L+  ML   V+P+  T
Sbjct: 61  CTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT 120

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
              +     +  ALE GR +H ++     ++ NV V TAL+ MY  CG L  AR VFD  
Sbjct: 121 FPFLFKGFTRDIALEYGRQLHGHVL-KHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 179

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
              DV+ WN +I  Y   G  +++ +LF  M   ++ P+ +T + +LSAC+    +  G+
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 239

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
           +  + +K+   +E  +     M+++ +  G+++ A  +   M    D + W T++     
Sbjct: 240 KVHSYVKN-CKVESNLVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVS---- 293

Query: 290 HGNIALGE 297
            G   LGE
Sbjct: 294 -GFTNLGE 300



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G  + AR +FD + + ++ +WN+MI GY+   F +  + L+ EM R  +KP   TF  L 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 217 SACAHAGLVNEGRRF----------------------------FNTMKDEYAIEPKVE-- 246
                   +  GR+                              +T +  + + PK +  
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 247 HYGCMVNLLSRAGQVEEAYKLVM---DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            +  +++  ++ G+ EE+ +L +   D ++ P +V    +L AC    ++  G+K+  Y+
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245

Query: 304 ISQNLANSGTYVL---LSNIYAAIGNWDGVARVRTLMKEKGV 342
             +N       VL   + ++YA  G  D    +   M  + +
Sbjct: 246 --KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI 285


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/474 (46%), Positives = 318/474 (67%), Gaps = 2/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DLYV  S++DLY + G +  A K+F  M +R +VS T ++  YAK G++ +A  LFDD+ 
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KD+V W  M+ GYAQ+G   EAL  F++M    +E +EVT   V+SAC Q+GA++   W
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 129 IHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           I    E S      NV VG+ALI+MYSKCGS  +A  VF+ + +++V  ++SMI+GYAMH
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G    ALQLF++M +  ++P+ +TFIG+LSAC+HAGLV +GR+ F  M+  + + P  +H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL RAG +EEA  LV  M +EP+  +WG LLGACR+HGN  + +  A  L    
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN-KVHEFLAGDLR 366
               G Y+LLSNIYA+ G W+ V+++R +++EKG +K PGCS  E  N ++H+F AGD  
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+S EI   L+++   L++ GY P      +D+ + +K+  L  HSEKLA+A+GL+ T+
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G +IKI+KN+R+C DCH V    S+ TGR+I++RD  RFHHF NGTCSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 35/263 (13%)

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++F  +   +   W  MI GYA  GL +E+   + RM  + V P   T  A+  ACG   
Sbjct: 97  LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV------- 174
            ++ G+ +H+          ++ VG ++I++Y KCG L  AR VFD ++++DV       
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELI 216

Query: 175 ------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                                   V W +M+ GYA +G  K+AL+ F +M  + ++  ++
Sbjct: 217 VAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--VEHYGCMVNLLSRAGQVEEAYKLV 268
           T  G++SACA  G V     +   + +     P   V     ++++ S+ G  +EAYK+ 
Sbjct: 277 TLAGVISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
             MK E +   + +++    +HG
Sbjct: 336 EVMK-ERNVFSYSSMILGYAMHG 357



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F    ++ V ++L+D+Y++ G    A K+F  M +R++ S ++M+  YA  G        
Sbjct: 306 FGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGR------- 358

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                                   A+ AL LF  ML  ++ PN+VT + +LSAC   G +
Sbjct: 359 ------------------------AHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           E GR + + +E    +  +      ++++  + G L++A  LV     + +  VW +++ 
Sbjct: 395 EQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLG 454

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDE 238
              +HG    A    NE+   +L+P+ I  +I L +  A AG   E  +    ++++
Sbjct: 455 ACRIHGNPDIAQIAANEL--FKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREK 509


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/479 (45%), Positives = 319/479 (66%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   D D+YV  SLV +Y+  GD+ SA  +F  +    +VS T+M+  Y K G+V +AR
Sbjct: 140 IRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSAR 199

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M EK++V W+VMI GYA++   ++A+ L+  + +E V  NE   V+V+++C  +G
Sbjct: 200 KLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLG 259

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G   H YI  ++ + VN+ +GTAL++MY++CGS+  A  VFD++  +D + W ++I
Sbjct: 260 ALELGERAHDYILRNK-MTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLI 318

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G+AMHG+ + AL+ F+ M +  L P +ITF  +LSAC+H GLV  G   F +MK +Y I
Sbjct: 319 AGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRI 378

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+LL RAG++ EA K V +M ++P++ +WG LLGACR+H N  + E+  +
Sbjct: 379 EPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGK 438

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     +SG YVLLSNIYA    W+ V  +R +MKE+GV K PG +  E+  KVH+F 
Sbjct: 439 TLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFT 498

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP+ ++I  M EEI G ++  GY       L DI E++K++++  HSEKLA+A+ 
Sbjct: 499 IGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYA 558

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++ T+    I+IVKNLRVC DCH   KLISK   R++++RDRNRFHHF  G CSC DYW
Sbjct: 559 IMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 145/323 (44%), Gaps = 47/323 (14%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLT--TMLTCYAKQGEVAAARVLFDDMEEKD 71
           T+L  L      ++ A  +F       L+S++    L  YA Q        +F  ++  +
Sbjct: 26  TTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQ--------VFYQIQNPN 77

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           +  +N  I G++     +++   + +     + P+ +T   ++ AC Q G+L+ G   H 
Sbjct: 78  LFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHG 137

Query: 132 -----------YIENS------------------RNIK-VNVQVGTALINMYSKCGSLKD 161
                      Y++NS                  R I  ++V   T+++  Y K G +  
Sbjct: 138 QIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTS 197

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           AR +FD++ +K++V W+ MI GYA + F   A++L+  +    +  ++   + ++++CAH
Sbjct: 198 ARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAH 257

Query: 222 AGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            G +  G R  +  ++++  +   +     +V++ +R G +++A   V D     D++ W
Sbjct: 258 LGALELGERAHDYILRNKMTVNLILG--TALVDMYARCGSIDKAI-WVFDQLPGRDALSW 314

Query: 281 GTLLGACRLHGNIALGEKIAEYL 303
            TL+    +HG     EK  EY 
Sbjct: 315 TTLIAGFAMHG---YAEKALEYF 334


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 304/432 (70%), Gaps = 1/432 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GE+  A  LF+ ++ KDV+ WN +I GYA      EAL++F+ ML    
Sbjct: 248 VNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE 307

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
            PN+VT +++L AC  +GA++ GRWIH YI+   + I  N  + T+LI+MY+KCG+++ A
Sbjct: 308 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA 367

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VFD + +K +   N+MI G+AMHG    A  L + M +  ++P DITF+GLLSAC+HA
Sbjct: 368 NQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHA 427

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL + GR+ F +M  +Y IEPK+EHYGCM++LL R+G  +EA +L+  M +EPD V+WG+
Sbjct: 428 GLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGS 487

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++H N+ LGE IA+ L+     N G+YVLLSNIYA    WD VARVRTL+ +KG+
Sbjct: 488 LLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGL 547

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEFL GD  HP++KEIY MLEEI+  L   G+V  T  VL ++ E
Sbjct: 548 KKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEE 607

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT ++IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 608 ELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARD 667

Query: 463 RNRFHHFVNGTC 474
           R+RFHHF +G C
Sbjct: 668 RSRFHHFKDGMC 679



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 190/356 (53%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K+ L  DL+V TSL+ +YA+ G V  A K+F T   R +VS T M+T YA +G +  A+
Sbjct: 105 LKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQ 164

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN MI GYA+ G   EAL LF  M+   V+P+E T   VLS C   G
Sbjct: 165 KMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSG 224

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +E GR IHS+I+N      N+++  ALI++YSKCG ++ A  +F+ +  KDV+ WN++I
Sbjct: 225 NVELGRQIHSWIDN-HGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLI 283

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GYA     K+AL +F EM ++   P+D+T + +L ACAH G ++ GR            
Sbjct: 284 GGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKG 343

Query: 230 -----RFFNTMKDEYA----IEPKVEHYGCMVNL-----------LSRAGQVEEAYKLVM 269
                    ++ D YA    IE   + +  ++N             +  G+ + A+ L+ 
Sbjct: 344 IITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLS 403

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            MK   IEPD + +  LL AC   G   LG KI      +Y I   L + G  + L
Sbjct: 404 RMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDL 459



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  ++E + + WN MI G+A       AL L+  M++  + PN  T   +  +C +  A
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--------------- 167
            + G+ IH+ I     + V++ V T+LI+MY++ G ++DA  VFD               
Sbjct: 94  AQEGKQIHAQILK-YGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMIT 152

Query: 168 ----------------RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN+MI GYA  G  K+AL+LFNEM ++ +KP + T
Sbjct: 153 GYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDEST 212

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
              +LS C H+G V  GR+  + + D +     ++    +++L S+ G++E A+ L   +
Sbjct: 213 MATVLSTCTHSGNVELGRQIHSWI-DNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGL 271

Query: 272 KIEPDSVLWGTLLGA 286
           + + D + W TL+G 
Sbjct: 272 QYK-DVISWNTLIGG 285


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/473 (48%), Positives = 326/473 (68%), Gaps = 9/473 (1%)

Query: 11  YVSTSLVDLYARG--GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           YV+ +++  Y++   GD+  A KLF  MP +  V+L TM+T Y +     +A  +F+ M 
Sbjct: 14  YVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFE-----SAYKVFELMP 68

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           EKD+V WN +I+G+A +G  NEAL L++RM +E VEP+  T V++LSAC ++  L  GR 
Sbjct: 69  EKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRR 128

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
            H Y+     +  N+    AL+++Y+KCG++ +AR +FD +  +++VV W S+IVG A++
Sbjct: 129 AHVYMVKV-GLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVN 187

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           GFGK+AL+ F +M R  L PS+ITF+G+L AC+H G+VNEG  +F  MK++Y I P++EH
Sbjct: 188 GFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEH 247

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGCMV+LL RAG ++EAY  + DM ++P++V+W TLLGAC +HG++ LG      L+   
Sbjct: 248 YGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLE 307

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +SG YVLLSN+YA+   W  V  VR  M  +GV+K PG S +EL N VHEF+ GD  H
Sbjct: 308 PKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTH 367

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+S+ IY ML E+   LK  GYVP T  VL DI E++K+++L  HSEK+A+AF LI+T P
Sbjct: 368 PQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLP 427

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GT I+I+KNLRVC DCH   KLISK   R I++RD +RFHHF +G+CSC DYW
Sbjct: 428 GTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 41/213 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAAA 60
           VK  L+K+L+ + +L+DLYA+ G +  A K+F  M  +R++VS T+++            
Sbjct: 134 VKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIV----------- 182

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               G A +G   EAL  F+ M  E + P+E+T V VL AC   
Sbjct: 183 --------------------GLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHC 222

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVV 176
           G +  G      ++   +I   ++    ++++  + G LK+A   +D + D     + V+
Sbjct: 223 GIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEA---YDYIQDMPLQPNAVI 279

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           W +++    +H  G   L  F     ++L+P D
Sbjct: 280 WRTLLGACTIH--GHLGLGAFARARLLQLEPKD 310


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/439 (51%), Positives = 312/439 (71%), Gaps = 6/439 (1%)

Query: 46  TMLTCYAKQG--EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AE 101
           T++  YAK G  ++ AAR LFD M ++DVV WN MI  YAQ+GL+ EAL L+ +ML    
Sbjct: 232 TIIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGG 290

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V  N VT  AVL AC   GA+++G+ IH+ +     ++ NV VGT++++MYSKCG ++ 
Sbjct: 291 DVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVR-MGLEDNVYVGTSVVDMYSKCGKVEM 349

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A   F ++  K+++ W++MI GY MHG+G++AL +F +M +  LKP+ ITFI +L+AC+H
Sbjct: 350 AWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSH 409

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGL++EGR ++NTMK E+ IEP VEHYGCMV+LL RAG ++EAY L+ +MK++PD+ LWG
Sbjct: 410 AGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWG 469

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
            LL ACR++ N+ L +  AE L   +  NSG YVLLSNIYA  G W  V R+R L+K +G
Sbjct: 470 ALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRG 529

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           ++K PG SS+EL  K H F  GD  HP+ KEIY  LE++   +   GYVP T  VLHD+ 
Sbjct: 530 IEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLD 589

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            +++++ L +HSEKLAVAF L+++  G+ I ++KNLRVC DCHA  K+I+K TGR+I++R
Sbjct: 590 VEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIR 649

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D  RFHHF +G CSCGDYW
Sbjct: 650 DLKRFHHFKDGLCSCGDYW 668



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 16/241 (6%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP--NEVTAVAVLSAC 117
           AR  FD++   + V    M  G  ++ L    L +FR M+A       +E  A+  LSA 
Sbjct: 143 ARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSAS 202

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTA--LINMYSKCGS--LKDARLVFDRVNDKD 173
            ++        IH+ +     I ++ Q G A  +I+ Y+K G   L  AR +FD + D+D
Sbjct: 203 ARVPDRGITGGIHALVS---KIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRD 258

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPSDITFIGLLSACAHAGLVNEGRRF 231
           VV WN+MI  YA +G   +AL L+++M  +   ++ + +T   +L ACAHAG +  G+R 
Sbjct: 259 VVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRI 318

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL-WGTLLGACRLH 290
            N +     +E  V     +V++ S+ G+VE A+K     KI+  ++L W  ++    +H
Sbjct: 319 HNQVV-RMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF--QKIKGKNILSWSAMIAGYGMH 375

Query: 291 G 291
           G
Sbjct: 376 G 376



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 75/138 (54%), Gaps = 1/138 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y+K G+V  A   F  ++ K+++ W+ MI GY  HG   EAL +F  M    ++
Sbjct: 335 TSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLK 394

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN +T + VL+AC   G L  GR+ ++ ++    I+  V+    ++++  + G L +A  
Sbjct: 395 PNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYG 454

Query: 165 VFDRVNDK-DVVVWNSMI 181
           +   +  K D  +W +++
Sbjct: 455 LIKEMKVKPDAALWGALL 472


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/479 (46%), Positives = 323/479 (67%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + D +V + L+ +YA    + S  ++F ++ +  LV  TTM++  AK G++  AR
Sbjct: 137 IKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFAR 196

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M ++D V WN MI GYAQ G + EAL LF+ M  + V+ NEV+ ++V++AC  +G
Sbjct: 197 NLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLG 256

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G+W H+YIE ++ I++ V +GTAL++MY KCG++  A  VF  +N+K+V  W++ I
Sbjct: 257 ALDQGKWAHAYIEKNK-IQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAI 315

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G AM+G+G+  L+LF+ M    + P++ITFI +L  C+  G V+EGR  F++MK ++ I
Sbjct: 316 GGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGI 375

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+L  RAG++EEA   +  M ++P +  WG LL ACR++ N+ LGE  + 
Sbjct: 376 EPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASR 435

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     N G YV LSNIYA  GNWD V+ VR  MK +G+ K PGCS +E++ +VHEF 
Sbjct: 436 KLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFF 495

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +GD  HP    I  M  EI+  LK  GYV  T  VL DI E++K+++L  HSEK+A+AFG
Sbjct: 496 SGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFG 555

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L S + G  I+IVKNLR+C DCH V K+ISK   R+I++RDRNRFHHF +G CSC D+W
Sbjct: 556 LFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/442 (48%), Positives = 301/442 (68%), Gaps = 1/442 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           RS    T ++  YAK GE+  AR LFD M  +DVV W+ MI GY Q     EAL +F  M
Sbjct: 305 RSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM 364

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
              +V PN+VT V+VLSAC  +GALE+G+W+HSYI   +++ + V +GTAL++ Y+KCG 
Sbjct: 365 QGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRR-KDLPLTVILGTALVDFYAKCGC 423

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +KDA   F+ +  ++   W ++I G A +G  ++AL+LF+ M    ++P+D+TFIG+L A
Sbjct: 424 IKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLA 483

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H  LV EGRR F +M  +Y I P++EHYGCMV+LL RAG ++EAY+ + +M IEP++V
Sbjct: 484 CSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAV 543

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +W  LL AC +H N+ +GE+  + ++  +  +SG Y+LLSN YA++G W   A VR  MK
Sbjct: 544 VWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMK 603

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           EKGV+K PGCS IEL   + EF A D  HP+  EIY  + E+   +K  GY+P T     
Sbjct: 604 EKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARL 663

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           D+ E +KQ S+  HSEKLA+AFGL+ ++PG +I++ KNLRVC DCH+  KLISK   R+I
Sbjct: 664 DVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREI 723

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDRNRFHHF +G CSC DYW
Sbjct: 724 IVRDRNRFHHFKDGLCSCNDYW 745



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 141/241 (58%), Gaps = 3/241 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  YA  G+V AA VLF  ++ K V+ WN MI GY ++G   E + +F+ ML  + 
Sbjct: 209 LNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRA 268

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +EVT ++V +ACG++G    G+WI  Y E    ++ +  + TAL++MY+KCG L  AR
Sbjct: 269 PFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLR-SRNLATALVDMYAKCGELDKAR 327

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FDR++ +DVV W++MI GY      ++AL +FNEM    + P+D+T + +LSACA  G
Sbjct: 328 RLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLG 387

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G+   + ++ +  +   V     +V+  ++ G +++A K    M +  ++  W  L
Sbjct: 388 ALETGKWVHSYIRRK-DLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTAL 445

Query: 284 L 284
           +
Sbjct: 446 I 446



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 125/273 (45%), Gaps = 45/273 (16%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
           +N++I  + + G   +AL LF  ML +  V P++ T    + +C ++  L  GR + +Y 
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAY- 196

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
              R   V+  V  +LI+MY+ CG +  A ++F  V  K V+ WN+MI GY  +G  K+ 
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEV 256

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSAC---------------------------------- 219
           +++F  M  +R    ++T + + +AC                                  
Sbjct: 257 VEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDM 316

Query: 220 -AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEP 275
            A  G +++ RR F+ M         V  +  M++  +++ +  EA  +  +M+   + P
Sbjct: 317 YAKCGELDKARRLFDRMHSR-----DVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNP 371

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           + V   ++L AC + G +  G+ +  Y+  ++L
Sbjct: 372 NDVTMVSVLSACAVLGALETGKWVHSYIRRKDL 404


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/436 (50%), Positives = 305/436 (69%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +  ARV+FD M+ +DVV WNVMI  +A+HG  +EA  LF +M  E  +
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ +  +++L+AC   GALE  + IH +  +S  ++V+V+VGTAL++MYSK GS+ DAR+
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDS-GLEVDVRVGTALVHMYSKSGSIDDARV 387

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+  ++VV WN+MI G A HG G+DAL++F  M    +KP  +TF+ +LSAC+HAGL
Sbjct: 388 VFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGL 447

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EGR  +  M   Y IEP V H  CMV+LL RAG++ EA   + +M ++PD   WG LL
Sbjct: 448 VDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALL 507

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           G+CR +GN+ LGE +A+  +  +  N+ TYVLLSNIYA  G WD V+ VRT+M+E+G++K
Sbjct: 508 GSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRK 567

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S IE+ NK+H+FL  D  HP+ KEI    +++   +KAEGY+P T++VL +   K 
Sbjct: 568 EPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKD 627

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  +  HSEKLA+ +GL+ T PG  I++ KNLRVC DCH   KLISK  GR+I++RD N
Sbjct: 628 KELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDAN 687

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 688 RFHHFKDGVCSCGDYW 703



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 143/247 (57%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y K G +  AR +FD++   D++ W VMI  YAQ G   EA  L  +M  E  +
Sbjct: 168 TALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFK 227

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN +T V++L+AC   GAL+  + +H +  ++  ++++V+VGTAL+ MY+K GS+ DAR+
Sbjct: 228 PNAITYVSILNACASEGALKWVKRVHRHALDA-GLELDVRVGTALVQMYAKSGSIDDARV 286

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+  +DVV WN MI  +A HG G +A  LF +M     KP  I F+ +L+ACA AG 
Sbjct: 287 VFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGA 346

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +   ++      D   +E  V     +V++ S++G +++A  +   MK+  + V W  ++
Sbjct: 347 LEWVKKIHRHALDS-GLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMI 404

Query: 285 GACRLHG 291
                HG
Sbjct: 405 SGLAQHG 411



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 155/272 (56%), Gaps = 9/272 (3%)

Query: 25  DVLSAEKLF-----ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           D+++A+++      + M Q + V +  +L  Y + G +  AR +FD + +K    WN MI
Sbjct: 43  DLMAAKQVHDCIIKSRMEQNAHV-MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMI 101

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GY +H  A +A+ LFR M  E V+PN  T + +L AC  + AL+ G+ +H+ I +   +
Sbjct: 102 AGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHG-GL 160

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           + +V+VGTAL+ MY KCGS+ +AR +FD + + D++ W  MI  YA  G GK+A +L  +
Sbjct: 161 ESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQ 220

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M +   KP+ IT++ +L+ACA  G +   +R      D   +E  V     +V + +++G
Sbjct: 221 MEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDA-GLELDVRVGTALVQMYAKSG 279

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +++A  +   MK+  D V W  ++GA   HG
Sbjct: 280 SIDDARVVFDRMKVR-DVVSWNVMIGAFAEHG 310



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 49/295 (16%)

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           +EA+V+    L   +  +    V VL  C +   L + + +H  I  SR ++ N  V   
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSR-MEQNAHVMNN 68

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+++Y +CG L++AR VFD +  K    WN+MI GY  H   +DA++LF EMC   ++P+
Sbjct: 69  LLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPN 128

Query: 209 DITFIGLLSACA----------------HAGL-------------------VNEGRRFFN 233
             T++ +L ACA                H GL                   +NE RR F+
Sbjct: 129 AGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLH 290
            + +   I   V     M+   +++G  +EAY+L++ M+ E   P+++ + ++L AC   
Sbjct: 189 NLMNHDIISWTV-----MIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASE 243

Query: 291 GNIALGEKIAEYLISQNL---ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           G +   +++  + +   L      GT   L  +YA  G+ D    V   MK + V
Sbjct: 244 GALKWVKRVHRHALDAGLELDVRVGT--ALVQMYAKSGSIDDARVVFDRMKVRDV 296


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/484 (46%), Positives = 326/484 (67%), Gaps = 8/484 (1%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F LDKD +V TSL+++Y+  GD+ SA+++F     + L +  +++  YAK G +  AR L
Sbjct: 91  FGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKL 150

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-----VEPNEVTAVAVLSACG 118
           FD+M E++V+ W+ +I+GY   G   EAL LFR M   K     V PNE T   VLSACG
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACG 210

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVW 177
           ++GALE G+W+H+YI+   ++++++ +GTALI+MY+KCGSL+ A+ VF+ + + KDV  +
Sbjct: 211 RLGALEQGKWVHAYIDKY-HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAY 269

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           ++MI   AM+G   +  QLF+EM     + P+ +TF+G+L AC H GL+NEG+ +F  M 
Sbjct: 270 SAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMI 329

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +E+ I P ++HYGCMV+L  R+G ++EA   +  M +EPD ++WG+LL   R+ G+I   
Sbjct: 330 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 389

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E   + LI  +  NSG YVLLSN+YA  G W  V  +R  M+ KG+ K PGCS +E+   
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGV 449

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEF+ GD    +S+ IY ML+EI   L+  GYV  T+ VL D+ EK K+ +L  HSEKL
Sbjct: 450 VHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKL 509

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AF L+ T+PGT ++I+KNLR+C DCH V K+ISK   R+I++RD NRFHHF +G+CSC
Sbjct: 510 AIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSC 569

Query: 477 GDYW 480
            D+W
Sbjct: 570 RDFW 573



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 32/188 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K+ ++ D+ + T+L+D+YA+ G +  A+++F  +  +                       
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK----------------------- 263

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIG 121
                  KDV  ++ MI   A +GL +E   LF  M  ++ + PN VT V +L AC   G
Sbjct: 264 -------KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRG 316

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            +  G+     +     I  ++Q    ++++Y + G +K+A   +     + DV++W S+
Sbjct: 317 LINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSL 376

Query: 181 IVGYAMHG 188
           + G  M G
Sbjct: 377 LSGSRMLG 384


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/452 (48%), Positives = 301/452 (66%), Gaps = 1/452 (0%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A +LF  MP +++ S  TM+T YA+ G++A AR  FD M ++D + W  +I GYAQ G  
Sbjct: 316 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 375

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EAL LF  M  +    N  T  + LS C +I ALE G+ +H  +  +  ++    VG A
Sbjct: 376 EEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA-GLESGCYVGNA 434

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ MY KCG++ DA +VF+ + +K+VV WN+MI GYA HGFGK+AL LF  M +  + P 
Sbjct: 435 LLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPD 494

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           D+T +G+LSAC+H GLV++G  +F +M  +Y I    +HY CM++LL RAG++++A  L+
Sbjct: 495 DVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM 554

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            +M  EPD+  WG LLGA R+HGN  LGEK A+ +      NSG YVLLSN+YAA G W 
Sbjct: 555 KNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWG 614

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            V R+R  M+++GV+K PG S +E+ NK+H F  GD  HP+   IY  LEE++  +K EG
Sbjct: 615 DVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEG 674

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YV  T++VLHD+ E++K + L+ HSEKLAVAFG+++   G  I+++KNLRVC DCH   K
Sbjct: 675 YVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMK 734

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ISK  GR I++RD +RFHHF  G CSCGDYW
Sbjct: 735 HISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 19/266 (7%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A +LF  MP R LVS   M++   +   + AAR+LFD M E+DVV WN M+ GYAQ+G  
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EA  +F  M  +    N ++   +L+A  Q G +E  R +     +   I  N  +G  
Sbjct: 159 KEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGG- 213

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
               Y K   L DAR +FDR+ ++D V WN+MI GYA +G   +A +LF E   +R    
Sbjct: 214 ----YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVR---D 265

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             T+  ++S     G+++E RR F+ M ++ ++      +  ++    +  ++++A +L 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELF 320

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIA 294
             M  +  S  W T++     +G+IA
Sbjct: 321 EAMPCQNVSS-WNTMITGYAQNGDIA 345



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 181/392 (46%), Gaps = 44/392 (11%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++D+    +++  YA+ G V  A+++F  MP ++ +S   ML  Y + G +  AR LF+ 
Sbjct: 139 ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 198

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA-LES 125
             + +++ WN M+ GY +     +A  +F RM     E +EV+   ++S   Q G  LE+
Sbjct: 199 KADWELISWNCMMGGYVKRNRLVDARGIFDRM----PERDEVSWNTMISGYAQNGELLEA 254

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
            R          +   +V   TA+++ Y + G L +AR VFD + +K+ V WN++I GY 
Sbjct: 255 QRLFEE------SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYV 308

Query: 186 MHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
                  A +LF  M C+     +  ++  +++  A  G + + R FF+ M    +I   
Sbjct: 309 QCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-- 361

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL---LGACRLHGNIALGEKIAE 301
              +  ++   +++G  EEA  L ++MK + + +   T    L  C     + LG+++  
Sbjct: 362 ---WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG 418

Query: 302 YLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++   L  SG YV   L  +Y   GN D    V   ++EK V               + 
Sbjct: 419 RVVKAGL-ESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVV------------SWNT 465

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            +AG  RH   KE  M+ E     +K  G +P
Sbjct: 466 MIAGYARHGFGKEALMLFES----MKKTGILP 493



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 35/203 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L+   YV  +L+ +Y + G++  A  +F  + ++ +VS  TM+  YA+        
Sbjct: 421 VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR-------- 472

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   EAL+LF  M    + P++VT V VLSAC   G
Sbjct: 473 -----------------------HGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 509

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            ++ G      +     I  N +  T +I++  + G L DA+ L+ +   + D   W ++
Sbjct: 510 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 569

Query: 181 IVGYAMHG---FGKDALQLFNEM 200
           +    +HG    G+ A ++  EM
Sbjct: 570 LGASRIHGNTELGEKAAKMIFEM 592


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/474 (46%), Positives = 318/474 (67%), Gaps = 2/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DLYV  S++DLY + G +  A K+F  M +R +VS T ++  YAK G++ +A  LFDD+ 
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KD+V W  M+ GYAQ+G   EAL  F++M    +E +EVT   V+SAC Q+GA++   W
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 129 IHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           I    E S      NV VG+ALI+MYSKCGS  +A  VF+ + +++V  ++SMI+GYAMH
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G    ALQLF++M +  ++P+ +TFIG+LSAC+HAGLV +GR+ F  M+  + + P  +H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL RAG +EEA  LV  M +EP+  +WG LLGACR+HGN  + +  A  L    
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN-KVHEFLAGDLR 366
               G Y+LLSNIYA+ G W+ V+++R +++EKG +K PGCS  E  N ++H+F AGD  
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+S EI   L+++   L++ GY P      +D+ + +K+  L  HSEKLA+A+GL+ T+
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G +IKI+KN+R+C DCH V    S+ TGR+I++RD  RFHHF NGTCSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 35/263 (13%)

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++F  +   +   W  MI GYA  GL +E+   + RM  + V P   T  A+  ACG   
Sbjct: 97  LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV------- 174
            ++ G+ +H+          ++ VG ++I++Y KCG L  AR VFD ++++DV       
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELI 216

Query: 175 ------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                                   V W +M+ GYA +G  K+AL+ F +M  + ++  ++
Sbjct: 217 VAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--VEHYGCMVNLLSRAGQVEEAYKLV 268
           T  G++SACA  G V     +   + +     P   V     ++++ S+ G  +EAYK+ 
Sbjct: 277 TLAGVISACAQLGAVKHA-NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
             MK E +   + +++    +HG
Sbjct: 336 EVMK-ERNVFSYSSMILGYAMHG 357



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F    ++ V ++L+D+Y++ G    A K+F  M +R++ S ++M+  YA  G        
Sbjct: 306 FGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGR------- 358

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                                   A+ AL LF  ML  ++ PN+VT + +LSAC   G +
Sbjct: 359 ------------------------AHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLV 394

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           E GR + + +E    +  +      ++++  + G L++A  LV     + +  VW +++ 
Sbjct: 395 EQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLG 454

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDE 238
              +HG    A    NE+   +L+P+ I  +I L +  A AG   E  +    ++++
Sbjct: 455 ACRIHGNPDIAQIAANEL--FKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREK 509


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/478 (43%), Positives = 314/478 (65%), Gaps = 1/478 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K   + D  + T++ ++YA+ G +  AE++F+ M  +++V+  ++LT Y K G++ +A  
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F +M  ++VV WN+MI GYAQ G   +   L   M  E  +P+ VT +++L ACG + A
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           LE G+ +H+       ++ +  V T+LI MYSKCG + +AR VFD+++++D V WN+M+ 
Sbjct: 534 LERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLA 592

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY  HG G +A+ LF  M + R+ P++ITF  ++SAC  AGLV EGR  F  M++++ ++
Sbjct: 593 GYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMK 652

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P  +HYGCMV+LL RAG+++EA + +  M  EPD  +W  LLGAC+ H N+ L E  A +
Sbjct: 653 PGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHH 712

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           ++    +N+  YV LSNIYA  G WD   +VR +M +KG++K+ G SSIE+  ++H F+A
Sbjct: 713 ILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVA 772

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
            D  HP+   I+  LE +   +K  GY P  + VLHD+ E QK+ +L  HSEKLA+A+GL
Sbjct: 773 EDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGL 832

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + T PGT I+I+KNLRVC DCH   K ISK   R+I+ RD NRFH+F NGTCSCGD+W
Sbjct: 833 LKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 167/306 (54%), Gaps = 11/306 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++T Y+K GE++ A  +F  M+E++VV W  +I   AQH   NEA  L+ +ML   + 
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS 277

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT V++L++C    AL  GR IHS+I + R ++ +V V  ALI MY KC  ++DAR 
Sbjct: 278 PNAVTFVSLLNSCNTPEALNRGRRIHSHI-SERGLETDVVVANALITMYCKCNCIQDARE 336

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFG-----KDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            FDR++ +DV+ W++MI GYA  G+       +  QL   M R  + P+ +TF+ +L AC
Sbjct: 337 TFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKAC 396

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +  G + +GR+    +  +   E        + N+ ++ G + EA ++   M+   + V 
Sbjct: 397 SVHGALEQGRQIHAEI-SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVA 454

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W +LL      G++   EK+   + ++N+    ++ L+   YA  G+   V  + + MK 
Sbjct: 455 WASLLTMYIKCGDLTSAEKVFSEMSTRNVV---SWNLMIAGYAQSGDIAKVFELLSSMKV 511

Query: 340 KGVQKE 345
           +G Q +
Sbjct: 512 EGFQPD 517



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 166/336 (49%), Gaps = 40/336 (11%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y+K G+VA+   +F  M  +DVV W+ MI  YA +    +A   F RM    +EP
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N +T +++L AC     LE  R IH+ ++ S  ++ +V V TALI MYSKCG +  A  +
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACEI 236

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F ++ +++VV W ++I   A H    +A +L+ +M +  + P+ +TF+ LL++C     +
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEAL 296

Query: 226 NEGRRFF-------------------------NTMKD-----EYAIEPKVEHYGCMVNLL 255
           N GRR                           N ++D     +   +  V  +  M+   
Sbjct: 297 NRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGY 356

Query: 256 SRAG-----QVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKI-AEYLISQ 306
           +++G      ++E ++L+  M+ E   P+ V + ++L AC +HG +  G +I AE     
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVG 416

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             ++      + N+YA  G+     +V + M+ K V
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 39/241 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L+ D  V+TSL+ +Y++ G+V  A  +F  +  R  V+   ML             
Sbjct: 545 VKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLA------------ 592

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              GY QHG+  EA+ LF+RML E+V PNE+T  AV+SACG+ G
Sbjct: 593 -------------------GYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAG 633

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ GR I   ++    +K   Q    ++++  + G L++A     R+  + D+ VW+++
Sbjct: 634 LVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHAL 693

Query: 181 IVGYAMHGFGKDALQLFNEMCR--IRLKPSDIT-FIGLLSACAHAGLVNEGRRFFNTMKD 237
           +     H    D +QL        +RL+PS+ + ++ L +  A AG  ++  +    M D
Sbjct: 694 LGACKSH----DNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDD 749

Query: 238 E 238
           +
Sbjct: 750 K 750



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 4/261 (1%)

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
           G   EA+ L   +    +  N  T   ++  C ++   E G+ +H  + +   + +++ +
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQL-DELGLAIDIYL 115

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
           G +LIN YSK G +     VF R+  +DVV W+SMI  YA +     A   F  M    +
Sbjct: 116 GNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANI 175

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           +P+ ITF+ +L AC +  ++ + R     +K    +E  V     ++ + S+ G++  A 
Sbjct: 176 EPNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLAC 234

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAI 324
           ++   MK E + V W  ++ A   H  +    ++ E ++   ++ N+ T+V L N     
Sbjct: 235 EIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293

Query: 325 GNWDGVARVRTLMKEKGVQKE 345
              +   R+ + + E+G++ +
Sbjct: 294 EALNRGRRIHSHISERGLETD 314


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/495 (45%), Positives = 333/495 (67%), Gaps = 17/495 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFAT------------MPQR----SLVSLT 45
           VKF   +D +V ++LV +Y     +  A  LF              + +R    ++V   
Sbjct: 149 VKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWN 208

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            M+    + G++ +A+ LFD+M ++ VV WNVMI GYAQ+G   EA+ LF+ M +  ++P
Sbjct: 209 IMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDP 268

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT V+VL A  +IGALE G+WIH Y   ++ I+++  +G+AL++MYSKCGS+ +A  V
Sbjct: 269 NYVTLVSVLPAIARIGALELGKWIHLYAGKNK-IEIDDVLGSALVDMYSKCGSIDEALQV 327

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  ++ + W+++I  +AMHG  +DA+  F+ M +  + P+D+ +IG+LSAC+HAGLV
Sbjct: 328 FETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLV 387

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGR FF+ M     ++P++EHYGCMV+LL RAG +EEA +L+ +M IEPD V+W  LLG
Sbjct: 388 EEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLG 447

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC++H N+ +GE++AE L+     +SG+YV LSN+YA++GNW+ VARVR  MK   ++K+
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCS IE+   +HEFL  D  H K+KEI  ML E++  L++ GY P T  V  +  E+++
Sbjct: 508 PGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQER 567

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             +L+ HSEK+AVAFGLIST P   +KIVKNLR+C DCHA  KLIS    R+I++RDR R
Sbjct: 568 ARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKR 627

Query: 466 FHHFVNGTCSCGDYW 480
           FH F +G+CSC DYW
Sbjct: 628 FHQFEHGSCSCMDYW 642



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 132/304 (43%), Gaps = 52/304 (17%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG---LANEALVL 94
           Q  L +   +  C     ++  AR +F  M E +  CWN ++   A+     L +EAL+L
Sbjct: 49  QDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALML 108

Query: 95  FRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIE------------------- 134
           F  ML + +V+PN  T  +VL AC +   L  G+ IH  I                    
Sbjct: 109 FSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYV 168

Query: 135 ---------------------------NSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
                                      + R    NV +   +I+   + G +K A+ +FD
Sbjct: 169 MCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFD 228

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
            +  + VV WN MI GYA +G   +A+ LF EM    + P+ +T + +L A A  G +  
Sbjct: 229 EMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALEL 288

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
           G ++ +    +  IE        +V++ S+ G ++EA + V +   + +++ W  ++GA 
Sbjct: 289 G-KWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQ-VFETLPKRNAITWSAIIGAF 346

Query: 288 RLHG 291
            +HG
Sbjct: 347 AMHG 350


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/436 (48%), Positives = 304/436 (69%), Gaps = 1/436 (0%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             T++  Y+  G V  AR +FD M ++D+V +N MI GYA H L  EAL LF R+  E ++
Sbjct: 586  NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 645

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            P++VT + +L+AC   G+LE  + IHS +     +  +  +G AL++ Y+KCGS  DA L
Sbjct: 646  PDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLS-DTSLGNALVSTYAKCGSFSDALL 704

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            VFD++  ++V+ WN++I G A HG G+D LQLF  M    +KP  +TF+ LLSAC+HAGL
Sbjct: 705  VFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGL 764

Query: 225  VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            + EGRR+F +M  ++ I P +EHYGCMV+LL RAGQ++E   L+  M  + ++ +WG LL
Sbjct: 765  LEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALL 824

Query: 285  GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            GACR+HGN+ + E+ AE  +  +  N+  YV LS++YAA G WD  A++R LM+++GV K
Sbjct: 825  GACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTK 884

Query: 345  EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            EPG S IE+ +K+H F+A D  HP+S++IY  L+++   +K EGYVP T+ V+HD+ E +
Sbjct: 885  EPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGE 944

Query: 405  KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            K+N++  HSE+LA+A+GLIST PGT I+I KNLRVCPDCH   K I+K   R+I+ RD N
Sbjct: 945  KENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVN 1004

Query: 465  RFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 1005 RFHHFKDGVCSCGDYW 1020



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 153/261 (58%), Gaps = 11/261 (4%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +F    Q +L+S+      YA+ G +  AR+LF+ M  KD++ W  MI G A+ GL  EA
Sbjct: 478 MFDISVQNALISM------YARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEA 531

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           L +F+ M    ++PN VT  ++L+AC    AL+ GR IH  +  +  +  +  V   L+N
Sbjct: 532 LAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEA-GLATDAHVANTLVN 590

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MYS CGS+KDAR VFDR+  +D+V +N+MI GYA H  GK+AL+LF+ +    LKP  +T
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 650

Query: 212 FIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           +I +L+ACA++G +   +   +  +KD Y  +  + +   +V+  ++ G   +A  LV D
Sbjct: 651 YINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGN--ALVSTYAKCGSFSDAL-LVFD 707

Query: 271 MKIEPDSVLWGTLLGACRLHG 291
             ++ + + W  ++G C  HG
Sbjct: 708 KMMKRNVISWNAIIGGCAQHG 728



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 176/330 (53%), Gaps = 35/330 (10%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK G +  AR +FD ME K VV W ++I GYA  G +  A  +F++M  E V PN
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T + VL+A     AL+ G+ +HS+I N+ + + ++ VGTAL+ MY+KCGS KD R VF
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGH-ESDLAVGTALVKMYAKCGSYKDCRQVF 403

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +++ ++D++ WN+MI G A  G  ++A +++++M R  + P+ IT++ LL+AC +   ++
Sbjct: 404 EKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALH 463

Query: 227 EGRRFFN-TMKDEYAIEPKVEH-----------------------------YGCMVNLLS 256
            GR   +  +KD +  +  V++                             +  M+  L+
Sbjct: 464 WGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLA 523

Query: 257 RAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           ++G   EA  +  DM+   ++P+ V + ++L AC     +  G +I + +I   LA    
Sbjct: 524 KSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH 583

Query: 314 YV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
               L N+Y+  G+     +V   M ++ +
Sbjct: 584 VANTLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 160/298 (53%), Gaps = 4/298 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G     R +F+ +  +D++ WN MI G A+ G   EA  ++ +M  E + 
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN++T V +L+AC    AL  GR IHS +        ++ V  ALI+MY++CGS+KDARL
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIKDARL 502

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+++  KD++ W +MI G A  G G +AL +F +M +  LKP+ +T+  +L+AC+    
Sbjct: 503 LFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAA 562

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++ GRR    +  E  +         +VN+ S  G V++A + V D   + D V +  ++
Sbjct: 563 LDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDA-RQVFDRMTQRDIVAYNAMI 620

Query: 285 GACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           G    H       K+ + L  + L  +  TY+ + N  A  G+ +    + +L+ + G
Sbjct: 621 GGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 143/280 (51%), Gaps = 6/280 (2%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++  ++  Y + G +  AR +++ +   E+ V  WN M+ GY Q+G   EAL L R M  
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             +     T + +LS+C    ALE GR IH     +R +  +V V   ++NMY+KCGS+ 
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKAR-LLFDVNVANCILNMYAKCGSIH 296

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +AR VFD++  K VV W  +I GYA  G  + A ++F +M +  + P+ IT+I +L+A +
Sbjct: 297 EAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
               +  G+   + + +    E  +     +V + ++ G  ++  + V +  +  D + W
Sbjct: 357 GPAALKWGKTVHSHILNA-GHESDLAVGTALVKMYAKCGSYKDC-RQVFEKLVNRDLIAW 414

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSN 319
            T++G     GN     +I   +  +  + N  TYV+L N
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLN 454


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/436 (50%), Positives = 305/436 (69%), Gaps = 3/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G+  AARV F   +   VV +N MI    +     EALVLFR M A+ + P
Sbjct: 173 TLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNP 232

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             VT ++VLSAC  +GAL+ GRW+H Y+     +   V+V TAL++MY+KCGSL+DA  V
Sbjct: 233 TPVTVISVLSACALLGALQLGRWLHDYVRK-LGLGSLVKVSTALVDMYAKCGSLEDAIAV 291

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D   W+ MIV YA HG+G++A+ LF EM +  +KP DITF+GLL AC+H+GLV
Sbjct: 292 FQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLV 351

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +EG R+F+ MKD + I P ++HYGC+ +LL+R+GQ+E AYK + ++ I P  +LW TLL 
Sbjct: 352 SEGLRYFDDMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLS 410

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  HG++ LG+++ E ++  + ++ G YV+ SN+ A  G W+ + RVR LM +KGV K 
Sbjct: 411 ACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKV 470

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE+ N VHEF AGD RHPKS+E   M++E+   LK  GY+P T  V H ++GE++
Sbjct: 471 PGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVFHVEMGEEE 530

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  SL+ HSEKLA+AFGL++T PG ++++VKNLRVCPDCH++ K +S    R+I++RD N
Sbjct: 531 KAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLN 590

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSCGDYW
Sbjct: 591 RFHHFERGICSCGDYW 606



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 25/254 (9%)

Query: 52  AKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEA-----LVLFRRMLAEKVEP 105
           A    +A AR +FD + +  D V +N ++ GYA+   ++ +     + +F RML E V P
Sbjct: 72  AGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAP 131

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA--------LINMYSKCG 157
           +  T V++L AC    A E GR  H+         V V++G A        LINMY++CG
Sbjct: 132 DTYTFVSLLKACAAARAGEHGRQAHA---------VAVKLGAAGHDYVRPTLINMYAECG 182

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             + AR+ F R +   VV +N+MI          +AL LF EM    L P+ +T I +LS
Sbjct: 183 DARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLS 242

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           ACA  G +  GR   + ++ +  +   V+    +V++ ++ G +E+A  +   M+   D 
Sbjct: 243 ACALLGALQLGRWLHDYVR-KLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESR-DR 300

Query: 278 VLWGTLLGACRLHG 291
             W  ++ A   HG
Sbjct: 301 QAWSVMIVAYANHG 314



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 8/203 (3%)

Query: 40  SLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV ++T L   YAK G +  A  +F  ME +D   W+VMI  YA HG   EA+ LF  M
Sbjct: 267 SLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEM 326

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN--IKVNVQVGTALINMYSKC 156
             + ++P+++T + +L AC   G +  G     Y ++ ++  I   ++    + ++ ++ 
Sbjct: 327 KKQGMKPDDITFLGLLYACSHSGLVSEGL---RYFDDMKDHGIVPGIKHYGCVTDLLARS 383

Query: 157 GSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           G L+ A    D +  +   ++W +++     HG  +   ++F  +  +        ++  
Sbjct: 384 GQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRVFERILELD-DSHGGDYVIF 442

Query: 216 LSACAHAGLVNEGRRFFNTMKDE 238
            + CA+ G   E  R    M D+
Sbjct: 443 SNLCANTGYWEEMNRVRKLMSDK 465


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 298/441 (67%), Gaps = 1/441 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SL   T ++  Y K  ++  AR LFD  + +DV+ W  M+  YAQ    ++A  LF +M 
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              V P +VT V++LS C   GAL+ G+W+HSYI+  R ++V+  + TAL++MY+KCG +
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER-VEVDCILNTALVDMYAKCGDI 450

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             A  +F     +D+ +WN++I G+AMHG+G++AL +F EM R  +KP+DITFIGLL AC
Sbjct: 451 NAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHAC 510

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +HAGLV EG++ F  M   + + P++EHYGCMV+LL RAG ++EA++++  M I+P++++
Sbjct: 511 SHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIV 570

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           WG L+ ACRLH N  LGE  A  L+     N G  VL+SNIYAA   W   A VR  MK 
Sbjct: 571 WGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKT 630

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
            G++KEPG S IE++  VHEFL GD  HP+ + I  ML E+   L   GYVP T  VL +
Sbjct: 631 VGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLN 690

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           I E++K+ +L  HSEKLA+AFGLIST P T I+IVKNLRVC DCHA  KL+SK  GR I+
Sbjct: 691 IDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVII 750

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RDRNRFHHF  G CSCGDYW
Sbjct: 751 VRDRNRFHHFREGYCSCGDYW 771



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 156/283 (55%), Gaps = 9/283 (3%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRS------LVSLTTMLTCYAKQGEVAAARVLFDDME 68
           S+V+L+A   ++   + + A + + S      + + T +L  YAK G +  AR LF+ + 
Sbjct: 200 SMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLT 259

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +K VV W  MI G  +     E   LF RM  E + PNE+T ++++  CG  GAL+ G+ 
Sbjct: 260 QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ 319

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H+YI  +    V++ + TAL++MY KC  +++AR +FD   ++DV++W +M+  YA   
Sbjct: 320 LHAYILRN-GFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQAN 378

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
               A  LF++M    ++P+ +T + LLS CA AG ++ G ++ ++  D+  +E      
Sbjct: 379 CIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILN 437

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             +V++ ++ G +  A +L ++  I  D  +W  ++    +HG
Sbjct: 438 TALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHG 479



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 154/322 (47%), Gaps = 35/322 (10%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y +   V  AR++FD M E+DVV W+ MI   +++   + AL L R M   +V P+
Sbjct: 135 LMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPS 194

Query: 107 EVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           EV  V++++       +  G+ +H+Y I NS N  + V   TAL++MY+KCG L  AR +
Sbjct: 195 EVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQL 254

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  K VV W +MI G       ++  +LF  M    + P++IT + L+  C   G +
Sbjct: 255 FNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGAL 314

Query: 226 NEGRRFFN-TMKDEYAIE-----PKVEHYG------------------------CMVNLL 255
             G++     +++ +++        V+ YG                         M++  
Sbjct: 315 QLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAY 374

Query: 256 SRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANS 311
           ++A  +++A+ L   M+   + P  V   +LL  C + G + LG+ +  Y+  + +  + 
Sbjct: 375 AQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDC 434

Query: 312 GTYVLLSNIYAAIGNWDGVARV 333
                L ++YA  G+ +   R+
Sbjct: 435 ILNTALVDMYAKCGDINAAGRL 456



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 52/245 (21%)

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
           A +VL ACGQ+   + G+ IH ++   + +  +V VG AL+ MY +C  ++ ARLVFD++
Sbjct: 97  APSVLKACGQVSWTQLGKEIHGFVL-KKGLDRDVFVGNALMLMYGECACVEYARLVFDKM 155

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL------------- 216
            ++DVV W++MI   + +     AL+L  EM  ++++PS++  + ++             
Sbjct: 156 MERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGK 215

Query: 217 ---------------------------SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
                                      + C H GL    R+ FN +  +  +       G
Sbjct: 216 AMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGL---ARQLFNGLTQKTVVSWTAMIAG 272

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           C+     R+ ++EE  KL + M+ E   P+ +   +L+  C   G + LG+++  Y++  
Sbjct: 273 CI-----RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN 327

Query: 307 NLANS 311
             + S
Sbjct: 328 GFSVS 332



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 32/186 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ D  ++T+LVD+YA+ GD+ +A +LF     R +     ++T +           
Sbjct: 427 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF----------- 475

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                               A HG   EAL +F  M  + V+PN++T + +L AC   G 
Sbjct: 476 --------------------AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 515

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
           +  G+ +   + ++  +   ++    ++++  + G L +A  +   +  K + +VW +++
Sbjct: 516 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 575

Query: 182 VGYAMH 187
               +H
Sbjct: 576 AACRLH 581


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/472 (47%), Positives = 313/472 (66%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V +  V +YA  GDV +    FA +    +V +T ML   +  G+V  AR LFD M 
Sbjct: 158 DPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMP 217

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++D V WN M+ GY + G + EAL LF  M    V  +EVT V+VL+AC Q+GALE G W
Sbjct: 218 QRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMW 277

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +HSY+  SR ++V+V +GTAL++MYSKCG +  +  VF+ + ++++  W S + G AM+G
Sbjct: 278 VHSYV-CSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNG 336

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G++ L+LF  M    ++P+ +TF+ +L  C+ AGLV EGR  F++MKD++ +EP +EHY
Sbjct: 337 MGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHY 396

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RAG++++A   +  M +EP   +WG LL A R+H N+ LG+     L     
Sbjct: 397 GCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIES 456

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N   +VLLSNIYA   NW GV++VR +MK KGV+K PGCS+IE+  KVHEF  G   HP
Sbjct: 457 KNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHP 516

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           + K+I  ML E++  L+ +GY   T+ VL DI E++K+ ++ +HSEKLA+AFGLI+    
Sbjct: 517 RYKDIQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPED 576

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T I+IVKNLRVC DCH   KLISK   R+I+MRDRNRFHHF +G CSC DYW
Sbjct: 577 TVIRIVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/436 (48%), Positives = 295/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y+K  E+ +AR LFD+  EK +  WN MI GY Q+GL  +A+ LFR M   +  
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT   +LSAC Q+GAL  G+W+H  +  S + + ++ V TALI MY+KCGS+ +AR 
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVR-STDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  K+ V WN+MI GY +HG G++AL +F EM    + P+ +TF+ +L AC+HAGL
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG   FN+M   Y  EP V+HY CMV++L RAG ++ A + +  M IEP S +W TLL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLL 596

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H +  L   ++E L   +  N G +VLLSNI++A  N+   A VR   K++ + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG + IE+    H F +GD  HP+ KEIY  LE++ G ++  GY P+T++ LHD+ E++
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++  ++VHSE+LA+AFGLI+T+PGT I+I+KNLRVC DCH V KLISK T R I++RD N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDAN 776

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 777 RFHHFKDGVCSCGDYW 792



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 6/249 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT  ++ Y+K G++     LF +  + D+V +N MI GY  +G    +L LF+ ++    
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
                T V+++   G +  + +   IH Y   S N   +  V TAL  +YSK   ++ AR
Sbjct: 319 RLRSSTLVSLVPVSGHLMLIYA---IHGYCLKS-NFLSHASVSTALTTVYSKLNEIESAR 374

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD   +K +  WN+MI GY  +G  +DA+ LF EM +    P+ +T   +LSACA  G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+   + ++     E  +     ++ + ++ G + EA +L  D+  + + V W T+
Sbjct: 435 ALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRL-FDLMTKKNEVTWNTM 492

Query: 284 LGACRLHGN 292
           +    LHG 
Sbjct: 493 ISGYGLHGQ 501



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 45/334 (13%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
           + ++  Y K   V  AR +FD M EKD + WN MI GY ++ +  E++ +FR ++ E   
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T + +L A  ++  L  G  IHS +        +  V T  I++YSKCG +K   
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHS-LATKTGCYSHDYVLTGFISLYSKCGKIKMGS 276

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F      D+V +N+MI GY  +G  + +L LF E+     +    T + L+    H  
Sbjct: 277 ALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM 336

Query: 224 LV-----------------------------NE---GRRFFNTMKDEYAIEPKVEHYGCM 251
           L+                             NE    R+ F    DE + E  +  +  M
Sbjct: 337 LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLF----DE-SPEKSLPSWNAM 391

Query: 252 VNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           ++  ++ G  E+A  L  +M+     P+ V    +L AC   G ++LG+ + + + S + 
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451

Query: 309 ANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
             S  YV   L  +YA  G+     R+  LM +K
Sbjct: 452 -ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 151/350 (43%), Gaps = 52/350 (14%)

Query: 39  RSLVSLTTMLTC-YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           R+ +SL T LT   +  G +  AR +F  ++  DV  +NV++ G++ +   + +L +F  
Sbjct: 49  RNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAH 108

Query: 98  ML-AEKVEPNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALINMYS 154
           +  +  ++PN  T    +SA        +GR IH  + ++   +    + +G+ ++ MY 
Sbjct: 109 LRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDS---ELLLGSNIVKMYF 165

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF----NEMC--------- 201
           K   ++DAR VFDR+ +KD ++WN+MI GY  +    +++Q+F    NE C         
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225

Query: 202 ----------RIRL-------------KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
                      +RL                D    G +S  +  G +  G   F   +  
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-- 283

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
              +P +  Y  M++  +  G+ E +  L  ++ +    +   TL+    + G++ L   
Sbjct: 284 ---KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA 340

Query: 299 IAEYLISQN-LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
           I  Y +  N L+++     L+ +Y+ +     +   R L  E   +  P 
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNE---IESARKLFDESPEKSLPS 387



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 34/213 (15%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            +  +YVST+L+ +YA+ G +  A +LF  M +++ V+  TM                  
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTM------------------ 492

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                        I GY  HG   EAL +F  ML   + P  VT + VL AC   G ++ 
Sbjct: 493 -------------ISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
           G  I + + +    + +V+    ++++  + G L+ A    + ++ +    VW +++   
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +H     A  +  ++    L P ++ +  LLS
Sbjct: 600 RIHKDTNLARTVSEKL--FELDPDNVGYHVLLS 630


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/438 (50%), Positives = 307/438 (70%), Gaps = 7/438 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G+  AARV+F   +   VV +N MI    +     EALVLFR M  + ++P
Sbjct: 173 TLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKP 232

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTALINMYSKCGSLKDAR 163
             VT ++VLSAC  +GALE GRW+H Y+   R I +   V+V TALI+MY+KCGSL+DA 
Sbjct: 233 TSVTVISVLSACALLGALELGRWVHDYV---RKIGLGSLVKVSTALIDMYAKCGSLEDAI 289

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  +  KD   W+ MIV YA HG+G++A+ LF EM +  +KP DITF+G+L AC+H+G
Sbjct: 290 DVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSG 349

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EG ++F+ MKD + I P ++HYGC+ +LL+R+GQ+E AYK + ++ I P  +LW TL
Sbjct: 350 LVSEGLQYFDDMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTL 408

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L AC  HG+  LG+++ E ++  + ++ G YV+ SN+ A  G W+ +  VR LM EKGV 
Sbjct: 409 LSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVV 468

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGE 402
           K PGCSSIE+ N VHEF AGD RHPKS+E   M++E+   LK  GYVP T  V H ++GE
Sbjct: 469 KVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGE 528

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K  SL+ HSEKLA+AFGL++T PG ++++VKNLRVCPDCH++ KL+S    R+I++RD
Sbjct: 529 EEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRD 588

Query: 463 RNRFHHFVNGTCSCGDYW 480
            NRFHHF  G CSCGDYW
Sbjct: 589 LNRFHHFEEGICSCGDYW 606



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 25/254 (9%)

Query: 52  AKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHG-----LANEALVLFRRMLAEKVEP 105
           A    +A AR +FD +    D V +N ++ GYA+        A  A+ +F RML E V P
Sbjct: 72  AGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAP 131

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA--------LINMYSKCG 157
           +  T V++L AC    A E GR  H+         + V++G A        LINMY++CG
Sbjct: 132 DTYTFVSLLKACAAARAGEEGRQAHA---------LAVKLGAADHDYVRPTLINMYAECG 182

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             + AR++F   +   VV +N+MI          +AL LF EM    LKP+ +T I +LS
Sbjct: 183 DARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLS 242

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           ACA  G +  GR   + ++ +  +   V+    ++++ ++ G +E+A  +   M+ + D 
Sbjct: 243 ACALLGALELGRWVHDYVR-KIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESK-DR 300

Query: 278 VLWGTLLGACRLHG 291
             W  ++ A   HG
Sbjct: 301 QAWSVMIVAYANHG 314



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 7/168 (4%)

Query: 40  SLVSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV ++T ++  YAK G +  A  +F  ME KD   W+VMI  YA HG   EA+ LF  M
Sbjct: 267 SLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEM 326

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN--IKVNVQVGTALINMYSKC 156
             E ++P+++T + VL AC   G +  G     Y ++ ++  I   ++    + ++ ++ 
Sbjct: 327 KKEGMKPDDITFLGVLYACSHSGLVSEGL---QYFDDMKDHGIVPGIKHYGCVTDLLARS 383

Query: 157 GSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
           G L+ A    D +  +   ++W +++     HG  +   ++F  + ++
Sbjct: 384 GQLERAYKFIDELPINPTPILWRTLLSACGGHGDFELGKRVFERILKL 431


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 209/436 (47%), Positives = 298/436 (68%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y++  E+ +AR+LFD+  EK +  WN MI GYAQ+GL  +A+ LF+ M   +V 
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++LSAC Q+GAL  G+W+H  I N  + + N+ V TALI+MY+KCGS+ +A+ 
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLI-NRESFESNIFVSTALIDMYAKCGSITEAQR 465

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  + +K+ V WN+MI GY +HG+G +AL LFNEM   R+ P+ +TF+ +L AC+HAGL
Sbjct: 466 LFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGL 525

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG   F +M  ++  EP  EHY CMV+LL RAG +++A   +  M +EP   +WG LL
Sbjct: 526 VREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALL 585

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC +H +  L    ++ L   +  N G YVLLSNIY+A  N+   A VR ++K + + K
Sbjct: 586 GACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAK 645

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGC+ IE++N +H F +GD  HP++  IY MLE++ G ++  G+  +T   LHD+ E++
Sbjct: 646 TPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEE 705

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  ++VHSEKLA+AFGLI+++PGT I+I+KNLRVC DCH   K ISK T R I++RD N
Sbjct: 706 KELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDAN 765

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 766 RFHHFKDGICSCGDYW 781



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 155/307 (50%), Gaps = 12/307 (3%)

Query: 46  TMLTC-YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T L C Y+K GE+  AR+LF  + + D+V +N MI GY  +     ++ LF+ +L    +
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  + V ++      G L   R IH +   S  +  +    TAL  +YS+   ++ ARL
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVS-TALTTVYSRLNEIESARL 364

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD  ++K +  WN+MI GYA +G  + A+ LF EM +  ++P+ +T   +LSACA  G 
Sbjct: 365 LFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGA 424

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++ G+   + +  E + E  +     ++++ ++ G + EA +L   M  E ++V W  ++
Sbjct: 425 LSLGKWVHDLINRE-SFESNIFVSTALIDMYAKCGSITEAQRL-FSMMPEKNAVTWNAMI 482

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR-----VRTLMKE 339
               LHG       +   ++   ++ +G    LS +YA   +  G+ R      R+++ +
Sbjct: 483 SGYGLHGYGHEALNLFNEMLHSRVSPTGV-TFLSVLYAC--SHAGLVREGDEIFRSMVHD 539

Query: 340 KGVQKEP 346
            G +  P
Sbjct: 540 HGFEPLP 546



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 47/336 (13%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++ CY K   VAAAR +FD M E+D V WN M+ G  ++   +EA+++F  M+   + 
Sbjct: 145 SAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIG 204

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T  AVL    ++  L  G  I   +        +  V T L  +YSKCG ++ ARL
Sbjct: 205 FDSTTVAAVLPGVAELQDLALGMGIQC-LAMKVGFHSHAYVITGLACLYSKCGEIETARL 263

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL--------- 215
           +F ++   D+V +N+MI GY  +   + +++LF E+     K +  + +GL         
Sbjct: 264 LFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGH 323

Query: 216 --LSACAHA------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYG 249
             L+ C H                           +   R  F    DE + E  +  + 
Sbjct: 324 LHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLF----DESS-EKSLASWN 378

Query: 250 CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            M++  ++ G  E+A  L  +M+   + P+ V   ++L AC   G ++LG+ + + LI++
Sbjct: 379 AMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHD-LINR 437

Query: 307 NLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
               S  +V   L ++YA  G+     R+ ++M EK
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK 473



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 38/222 (17%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           S + +++VST+L+D+YA+ G +  A++LF+ MP+++ V+   M                 
Sbjct: 439 SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAM----------------- 481

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
                         I GY  HG  +EAL LF  ML  +V P  VT ++VL AC   G + 
Sbjct: 482 --------------ISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVR 527

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--VNDKDVVVWNSMIV 182
            G  I   + +    +   +    ++++  + G+L D  L F R    +    VW +++ 
Sbjct: 528 EGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNL-DKALDFIRKMPVEPGPPVWGALLG 586

Query: 183 GYAMHGFGKDA-LQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
              +H   KDA L          L P ++ +  LLS    AG
Sbjct: 587 ACMIH---KDANLARLASDKLFELDPQNVGYYVLLSNIYSAG 625



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 121/288 (42%), Gaps = 8/288 (2%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML- 99
           LV++T +    +    +  A +LF  +   D+  +NV+I  ++ +   + A+ L+  +  
Sbjct: 42  LVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRK 101

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           +  +EP+  T   V+S    +G                    ++ VG+A++  Y K   +
Sbjct: 102 STPLEPDNFTYAFVISGASSLGLGLLL----HAHSIVAGFGSDLFVGSAIVACYFKFSRV 157

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             AR VFD + ++D V+WN+M+ G   +    +A+ +F +M +  +     T   +L   
Sbjct: 158 AAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGV 217

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A    +  G      +  +            +  L S+ G++E A +L+     +PD V 
Sbjct: 218 AELQDLALGMG-IQCLAMKVGFHSHAYVITGLACLYSKCGEIETA-RLLFGQIGQPDLVS 275

Query: 280 WGTLLGACRLHGNIALGEKI-AEYLISQNLANSGTYVLLSNIYAAIGN 326
           +  ++     +       ++  E L+S    NS + V L  ++   G+
Sbjct: 276 YNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGH 323


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/452 (48%), Positives = 301/452 (66%), Gaps = 1/452 (0%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A +LF  MP +++ S  TM+T YA+ G++A AR  FD M ++D + W  +I GYAQ G  
Sbjct: 235 ARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 294

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EAL LF  M  +    N  T  + LS C +I ALE G+ +H  +  +  ++    VG A
Sbjct: 295 EEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKA-GLESGCYVGNA 353

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ MY KCG++ DA +VF+ + +K+VV WN+MI GYA HGFGK+AL LF  M +  + P 
Sbjct: 354 LLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPD 413

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           D+T +G+LSAC+H GLV++G  +F +M  +Y I    +HY CM++LL RAG++++A  L+
Sbjct: 414 DVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM 473

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            +M  EPD+  WG LLGA R+HGN  LGEK A+ +      NSG YVLLSN+YAA G W 
Sbjct: 474 KNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWG 533

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            V R+R  M+++GV+K PG S +E+ NK+H F  GD  HP+   IY  LEE++  +K EG
Sbjct: 534 DVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEG 593

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YV  T++VLHD+ E++K + L+ HSEKLAVAFG+++   G  I+++KNLRVC DCH   K
Sbjct: 594 YVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMK 653

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ISK  GR I++RD +RFHHF  G CSCGDYW
Sbjct: 654 HISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 181/392 (46%), Gaps = 44/392 (11%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++D+    +++  YA+ G V  A+++F  MP ++ +S   ML  Y + G +  AR LF+ 
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 117

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA-LES 125
             + +++ WN M+ GY +     +A  +F RM     E +EV+   ++S   Q G  LE+
Sbjct: 118 KADWELISWNCMMGGYVKRNRLVDARGIFDRM----PERDEVSWNTMISGYAQNGELLEA 173

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
            R          +   +V   TA+++ Y + G L +AR VFD + +K+ V WN++I GY 
Sbjct: 174 QRLFEE------SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYV 227

Query: 186 MHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
                  A +LF  M C+     +  ++  +++  A  G + + R FF+ M    +I   
Sbjct: 228 QCKRMDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS-- 280

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL---LGACRLHGNIALGEKIAE 301
              +  ++   +++G  EEA  L ++MK + + +   T    L  C     + LG+++  
Sbjct: 281 ---WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG 337

Query: 302 YLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++   L  SG YV   L  +Y   GN D    V   ++EK V               + 
Sbjct: 338 RVVKAGL-ESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVV------------SWNT 384

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            +AG  RH   KE  M+ E     +K  G +P
Sbjct: 385 MIAGYARHGFGKEALMLFES----MKKTGILP 412



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 96/184 (52%), Gaps = 15/184 (8%)

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLL 216
           +L+ ARL+FD++ ++DVV WN+M+ GYA +G+ K+A ++F+EM C+     + I++ G+L
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGML 99

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +A    G + + RR F +  D   I      + CM+    +  ++ +A + + D   E D
Sbjct: 100 AAYVQNGRIEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDA-RGIFDRMPERD 153

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
            V W T++     +G +   +++ E      + +  T+  + + Y   G  D   RV   
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFE---ESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 337 MKEK 340
           M EK
Sbjct: 211 MPEK 214



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 35/203 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L+   YV  +L+ +Y + G++  A  +F  + ++ +VS  TM+  YA+        
Sbjct: 340 VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYAR-------- 391

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   EAL+LF  M    + P++VT V VLSAC   G
Sbjct: 392 -----------------------HGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 428

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            ++ G      +     I  N +  T +I++  + G L DA+ L+ +   + D   W ++
Sbjct: 429 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 488

Query: 181 IVGYAMHG---FGKDALQLFNEM 200
           +    +HG    G+ A ++  EM
Sbjct: 489 LGASRIHGNTELGEKAAKMIFEM 511


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/442 (49%), Positives = 303/442 (68%), Gaps = 1/442 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SL  +   +  Y+K G+V  A  LF+ +  KDVV WN +I GY    L  EAL+LF+ ML
Sbjct: 250 SLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 309

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGS 158
                PN+VT ++VL AC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG 
Sbjct: 310 RSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGD 369

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++ A  VF+ +  K +  WN+MI G+AMHG    A  LF+ M +  ++P DIT +GLLSA
Sbjct: 370 IEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H+GL++ GR  F ++  +Y I PK+EHYGCM++LL  AG  +EA +++  M +EPD V
Sbjct: 430 CSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGV 489

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +W +LL AC++HGN+ L E  A+ L+     NSG+YVLLSNIYA  G W+ VAR+R ++ 
Sbjct: 490 IWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLN 549

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
            KG++K PGCSSIE+ + VHEF+ GD  HP+S+EIY MLEE++  L+  G+VP T  VL 
Sbjct: 550 GKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQ 609

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           ++ E+ K+ +L  HSEKLA+AFGLIST+PGT + +VKNLRVC +CH   KLISK   R+I
Sbjct: 610 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREI 669

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           + RDR RFHHF +G CSC DYW
Sbjct: 670 VARDRTRFHHFRDGVCSCCDYW 691



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 185/356 (51%), Gaps = 40/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + D Y  TSL+ +YAR G +  A K+F    QR +VS T ++T YA +G+V +AR
Sbjct: 110 MKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSAR 169

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD + E+DVV WN MI GY ++    EAL LF+ M+   V P+E T V+VLSAC Q G
Sbjct: 170 KVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSG 229

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR IH+ +++      ++++  A I +YSKCG ++ A  +F+ ++ KDVV WN++I
Sbjct: 230 SIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLI 289

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 290 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKG 349

Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+   A+ L  
Sbjct: 350 VTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFS 409

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD +    LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 410 RMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDL 465



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 31/254 (12%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+  +E +++ WN M+ G A        L ++ RM++    PN  T   +L +C +   
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98

Query: 123 LESGRWIHSYI-------------------------ENSRNI-----KVNVQVGTALINM 152
            E GR IH+ +                         E++R +     + +V   TALI  
Sbjct: 99  FEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITG 158

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+  G ++ AR VFD + ++DVV WN+MI GY  +   ++AL+LF EM R  ++P + T 
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTL 218

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +LSACA +G +  GR     + D +     ++     + L S+ G VE A  L   + 
Sbjct: 219 VSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLS 278

Query: 273 IEPDSVLWGTLLGA 286
            + D V W TL+G 
Sbjct: 279 CK-DVVSWNTLIGG 291



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 14/152 (9%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+   + ++++WN+M+ G A        L+++  M      P+  TF  LL +CA +  
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98

Query: 225 VNEGRRFF-NTMK-----DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
             EGR+     MK     D YA       +  ++++ +R G++E+A K V D   + D V
Sbjct: 99  FEEGRQIHAQVMKLGCELDRYA-------HTSLISMYARNGRLEDARK-VFDXSSQRDVV 150

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
               L+      G++    K+ + +  +++ +
Sbjct: 151 SCTALITGYASRGDVRSARKVFDXITERDVVS 182


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/472 (48%), Positives = 312/472 (66%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V +  V +YA  GDV +A   FA +    +V +T M+   A  GE  AAR LFD M 
Sbjct: 229 DPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMP 288

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++D V WN MI GY   G + EAL LF  M        EVT V+ L+AC Q+GALE G+W
Sbjct: 289 QRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKW 348

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +HS   +SR ++++V +GTALI+MYSKCG++  A  VFD + +++V  W S + G AM+G
Sbjct: 349 VHS-CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNG 407

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G+D L LF  M    ++P+ +TF+ +L  C+ AGLV+EGR  F++MK  + I+P +EHY
Sbjct: 408 MGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHY 467

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RAG++++A   +  M +EP   +WG LL A R+H N+ LG+   + L++   
Sbjct: 468 GCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIES 527

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N   +VLLSNIYA   NW GV+ VR +MK KGV+K PGCS+IE+  KVHEF  G   HP
Sbjct: 528 KNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHP 587

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           + KEI MML E+N  L+ +GY+  T+ VL DI E+ K++++ +HSEKLA+AFGL++    
Sbjct: 588 RHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPED 647

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             I+IVKNLRVC DCH   K+ISK   R+I+MRDRNRFHHF +G CSC DYW
Sbjct: 648 MEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/472 (48%), Positives = 312/472 (66%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V +  V +YA  GDV +A   FA +    +V +T M+   A  GE  AAR LFD M 
Sbjct: 236 DPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMP 295

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++D V WN MI GY   G + EAL LF  M        EVT V+ L+AC Q+GALE G+W
Sbjct: 296 QRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKW 355

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +HS   +SR ++++V +GTALI+MYSKCG++  A  VFD + +++V  W S + G AM+G
Sbjct: 356 VHS-CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNG 414

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G+D L LF  M    ++P+ +TF+ +L  C+ AGLV+EGR  F++MK  + I+P +EHY
Sbjct: 415 MGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHY 474

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RAG++++A   +  M +EP   +WG LL A R+H N+ LG+   + L++   
Sbjct: 475 GCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIES 534

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N   +VLLSNIYA   NW GV+ VR +MK KGV+K PGCS+IE+  KVHEF  G   HP
Sbjct: 535 KNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHP 594

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           + KEI MML E+N  L+ +GY+  T+ VL DI E+ K++++ +HSEKLA+AFGL++    
Sbjct: 595 RHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPED 654

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             I+IVKNLRVC DCH   K+ISK   R+I+MRDRNRFHHF +G CSC DYW
Sbjct: 655 MEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/472 (48%), Positives = 312/472 (66%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V +  V +YA  GDV +A   FA +    +V +T M+   A  GE  AAR LFD M 
Sbjct: 236 DPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMP 295

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++D V WN MI GY   G + EAL LF  M        EVT V+ L+AC Q+GALE G+W
Sbjct: 296 QRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKW 355

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +HS   +SR ++++V +GTALI+MYSKCG++  A  VFD + +++V  W S + G AM+G
Sbjct: 356 VHS-CAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNG 414

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G+D L LF  M    ++P+ +TF+ +L  C+ AGLV+EGR  F++MK  + I+P +EHY
Sbjct: 415 MGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHY 474

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RAG++++A   +  M +EP   +WG LL A R+H N+ LG+   + L++   
Sbjct: 475 GCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIES 534

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N   +VLLSNIYA   NW GV+ VR +MK KGV+K PGCS+IE+  KVHEF  G   HP
Sbjct: 535 KNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHP 594

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           + KEI MML E+N  L+ +GY+  T+ VL DI E+ K++++ +HSEKLA+AFGL++    
Sbjct: 595 RHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPED 654

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             I+IVKNLRVC DCH   K+ISK   R+I+MRDRNRFHHF +G CSC DYW
Sbjct: 655 MEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/438 (49%), Positives = 309/438 (70%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDV--VCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T +L  YAK G V  AR LFD+M E++   V WN MI  Y Q G    A+ +F++M +E 
Sbjct: 69  TGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN 128

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V+P EVT V++LSAC  +GAL+ G WIH YI   R +K++V +G ALI+MY KCG+L+ A
Sbjct: 129 VKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR-LKIDVVLGNALIDMYCKCGALEAA 187

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF  ++ K++  WNS+IVG  M+G G++A+  F  M +  +KP  +TF+G+LS C+H+
Sbjct: 188 IDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHS 247

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL++ G+R+F+ M   Y +EP VEHYGCMV+LL RAG ++EA +L+  M ++P+S++ G+
Sbjct: 248 GLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGS 307

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++H +  LGE++ + L+  +  + G YV LSN+YA++  WD V   R LM ++GV
Sbjct: 308 LLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGV 367

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            K PGCSSIE++N VHEF+AGD  HP+  +I   L+EI   LK +G+VP T  VLHDI E
Sbjct: 368 HKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEE 427

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+ ++  HSE++AVAFGL+ST PG +I++VKNLR C DCH+  KLIS    R+I++RD
Sbjct: 428 EEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRD 487

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF NG+CSC DYW
Sbjct: 488 RKRFHHFRNGSCSCNDYW 505


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/479 (47%), Positives = 311/479 (64%), Gaps = 31/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VKF  D D++V  ++V +Y                            +C A  G + +AR
Sbjct: 159 VKFGFDCDIHVQNTMVHMY----------------------------SCCA--GGINSAR 188

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M + D V W+ MI GYA+ G + EA+ LFR M   +V P+E+T V++LSAC  +G
Sbjct: 189 KVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLG 248

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+WI +YIE    I   V+V  ALI+M++KCG +  A  +F  +N+K +V W S+I
Sbjct: 249 ALELGKWIEAYIER-HEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVI 307

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VG AMHG G++A  LF EM    + P D+ FIGLLSAC+H+GLV  GR +F +M  +Y +
Sbjct: 308 VGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKL 367

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            PK+EHYGCMV++  R G V+EA + V +M IEP+ V+  TL+ ACR HG   LGEKI +
Sbjct: 368 VPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITK 427

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+     +   YVLLSNIYA   +W+   ++R +M+ KG++K PG + IE+ N+++EF+
Sbjct: 428 LLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFV 487

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  H + KEIY M++E+   +K  GY P T  VL DI E+ K++SL  HSEKLA+AFG
Sbjct: 488 AGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFG 547

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T PGT I+IVKNLRVC DCH+  K ISK   R+I+MRDRNRFHHF +G CSCGD+W
Sbjct: 548 LLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 8/256 (3%)

Query: 59  AARVLFD---DMEEKDVVCWNVMIDGYAQHGLA-NEALVLFRRMLAEKVEPNEVTAVAVL 114
           AA  LF    D    D   +N +I  YAQ G + ++AL L+  ML + + PN+ T   VL
Sbjct: 80  AASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVL 139

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-GSLKDARLVFDRVNDKD 173
            AC  +  L  G+ +H  +        ++ V   +++MYS C G +  AR VFD +   D
Sbjct: 140 KACAGLEVLNLGQTVHGSVVKF-GFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSD 198

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
            V W++MI GYA  G   +A+ LF EM    + P +IT + +LSAC   G +  G ++  
Sbjct: 199 SVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG-KWIE 257

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
              + + I   VE    ++++ ++ G + +A KL   M  E   V W +++    +HG  
Sbjct: 258 AYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMN-EKTIVSWTSVIVGMAMHGRG 316

Query: 294 ALGEKIAEYLISQNLA 309
                + E + S  +A
Sbjct: 317 QEATCLFEEMTSSGVA 332


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/475 (48%), Positives = 318/475 (66%), Gaps = 2/475 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++D +  T LVD  ++ G V SA KLF  MP R+LVS   M+  Y K G+  +A  LF  
Sbjct: 206 ERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQ 265

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M   D+V WN+MI GY  +G   +A+ +F  ML     P+  T V+VLSA   +  L  G
Sbjct: 266 MPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG 325

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           RWIHSY+E +   +++  +GT+LI MY+KCG ++ A  VF  +  K V  W ++IVG  +
Sbjct: 326 RWIHSYMEKN-GFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGI 384

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG    AL LF EMC+  LKP+ I FIG+L+AC HAGLV++GR++F+ M +EY IEP +E
Sbjct: 385 HGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLE 444

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYGC+V++L RAG +EEA   + +M I P+ V+W +LLG  R HG I +GE  A+ +I  
Sbjct: 445 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEV 504

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
                G Y+LLSN+YAA G W+ V+ VR +M ++G +K+PGCSS+E    +HEF+ GD+ 
Sbjct: 505 APETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDIS 564

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
           HP++KEIY  + E+   LK  G+VP  TQ++L   GEK+K+  LE HSE+LA+AFGLI+ 
Sbjct: 565 HPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINV 624

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +PG  I+I+KNLRVC DCH+V KL+SK   R+I++RD  RFHHF NG+CSC DYW
Sbjct: 625 KPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 159/319 (49%), Gaps = 21/319 (6%)

Query: 45  TTMLTCYA--KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           + +L  Y+  K  ++  AR +FD ++ + ++ WN +I  Y ++  +++ +VLF  ++ E 
Sbjct: 49  SRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEY 108

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P+  T   V+  C ++G ++ G+ IH  +        +V V  +L+NMYSKCG +  A
Sbjct: 109 L-PDNFTLPCVIKGCARLGVVQEGKQIHG-LALKIGFGSDVFVQGSLVNMYSKCGEIDCA 166

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R VFD + DKDVV+WNS+I GYA  G    ALQLF EM   R   S    +  LS C   
Sbjct: 167 RKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPE-RDAFSWTVLVDGLSKC--- 222

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G V   R+ F+ M     +      +  M+N   ++G  + A +L   M I  D V W  
Sbjct: 223 GKVESARKLFDQMPCRNLVS-----WNAMINGYMKSGDFDSALELFYQMPIW-DLVTWNL 276

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR---VRTLMKE 339
           ++    L+G     + +  + +   L +  ++  L ++ +A+     + +   + + M++
Sbjct: 277 MIAGYELNGQFM--DAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEK 334

Query: 340 KGVQKEP--GCSSIELSNK 356
            G + +   G S IE+  K
Sbjct: 335 NGFELDGILGTSLIEMYAK 353



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 152/353 (43%), Gaps = 78/353 (22%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K     D++V  SLV++Y++ G++  A K+F  M  + +V   +++  YA+ GE+  A
Sbjct: 138 ALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIA 197

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             LF++M E+D   W V++DG ++ G    A  LF +M                      
Sbjct: 198 LQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCR------------------- 238

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
                                N+    A+IN Y K G    A  +F ++   D+V WN M
Sbjct: 239 ---------------------NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLM 277

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK---- 236
           I GY ++G   DA+++F  M ++  +PS  T + +LSA +   ++ +GR   + M+    
Sbjct: 278 IAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGF 337

Query: 237 -----------DEYA----IEP-----------KVEHYGCMVNLLSRAGQVEEAYKLVMD 270
                      + YA    IE            KV H+  ++  L   G    A  L ++
Sbjct: 338 ELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLE 397

Query: 271 M---KIEPDSVLWGTLLGACRLHGNIALGEK-----IAEYLISQNLANSGTYV 315
           M    ++P+++++  +L AC   G +  G +     + EY I   L + G  V
Sbjct: 398 MCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLV 450



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 145 VGTALINMYS--KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V + L+ +YS  K   L  AR +FDR+  + ++ WN++I  Y  + F  D + LF+E+  
Sbjct: 47  VSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 106

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
             L P + T   ++  CA  G+V EG++     +K  +  +  V+  G +VN+ S+ G++
Sbjct: 107 EYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQ--GSLVNMYSKCGEI 163

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           + A K V D  I+ D VLW +L+      G I +  ++ E
Sbjct: 164 DCARK-VFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFE 202


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/479 (45%), Positives = 330/479 (68%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAAR 61
           ++ D +    L+   ++  +V   E + +   +    SL     ++L  YA  G+  +A 
Sbjct: 114 VEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAY 173

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+ M+E+D+V WN MI+G+A +G  NEAL LFR M  E VEP+  T V++LSA  ++G
Sbjct: 174 KVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELG 233

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE GR +H Y+     +  N  V  +L+++Y+KCG++++A+ VF  +++++ V W S+I
Sbjct: 234 ALELGRRVHVYLLKV-GLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLI 292

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VG A++GFG++AL+LF EM    L PS+ITF+G+L AC+H G+++EG  +F  MK+E  I
Sbjct: 293 VGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGI 352

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYGCMV+LLSRAG V++AY+ + +M ++P++V+W TLLGAC +HG++ LGE    
Sbjct: 353 IPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARS 412

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L++    +SG YVLLSN+YA+   W  V  +R  M + GV+K PG S +EL N+V+EF 
Sbjct: 413 HLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFT 472

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP+S+++Y +LE+I   LK EGYVP T  VL DI E++K+ +L  HSEK+A+AF 
Sbjct: 473 MGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFM 532

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T PGT I+++KNLRVC DCH   KLI+K   R+I++RDR+RFHHF  G+CSC DYW
Sbjct: 533 LLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 131/256 (51%), Gaps = 8/256 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           + T  +    ++ A  +F  +   +V  WN +I GYA+    + A + +R+M+   VEP+
Sbjct: 58  IFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPD 117

Query: 107 EVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             T   +L A  +   +  G  IHS  I N     V VQ   +L+++Y+ CG  + A  V
Sbjct: 118 THTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQ--NSLLHIYAACGDTESAYKV 175

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ + ++D+V WNSMI G+A++G   +AL LF EM    ++P   T + LLSA A  G +
Sbjct: 176 FELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGAL 235

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             GRR  +    +  +         +++L ++ G + EA ++  +M  E ++V W +L+ 
Sbjct: 236 ELGRR-VHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLIV 293

Query: 286 ACRLHGNIALGEKIAE 301
              ++G    GE+  E
Sbjct: 294 GLAVNG---FGEEALE 306



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L K+ +V+ SL+DLYA+ G +  A+++F+ M +R+ VS T+++             
Sbjct: 246 LKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIV------------ 293

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              G A +G   EAL LF+ M  + + P+E+T V VL AC   G
Sbjct: 294 -------------------GLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCG 334

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            L+ G      ++    I   ++    ++++ S+ G +K A   + +     + V+W ++
Sbjct: 335 MLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTL 394

Query: 181 IVGYAMHG 188
           +    +HG
Sbjct: 395 LGACTIHG 402


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/442 (49%), Positives = 303/442 (68%), Gaps = 1/442 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SL  +  ++  Y+K G+V  A  LF+ +  KDVV WN +I GY    L  EAL+LF+ ML
Sbjct: 234 SLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEML 293

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGS 158
                PN+VT ++VL AC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG 
Sbjct: 294 RSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGD 353

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++ A  VF+ +  + +  WN+MI G+AMHG    A  LF+ M   R++P DITF+GLLSA
Sbjct: 354 IEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSA 413

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H+GL++ GR+ F +M  +Y + PK+EHYGCM++LL  +G  +EA +++  M +EPD V
Sbjct: 414 CSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGV 473

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +W +LL AC+ HGN+ L E  A+ LI     NSG+YVLLSNIYA  G W+ VARVR ++ 
Sbjct: 474 IWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLN 533

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
            KG++K PGCSSIE+ + VHEF+ GD  HP+ +EIY MLEE++  L+  G+ P T  VL 
Sbjct: 534 GKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQ 593

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           ++ E+ K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I
Sbjct: 594 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 653

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           + RDR RFHHF +G CSC DYW
Sbjct: 654 VARDRTRFHHFRDGVCSCCDYW 675



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 181/336 (53%), Gaps = 38/336 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D YV TSL+ +YAR G +  A K+F     R +VS T ++T YA +G+  +AR
Sbjct: 91  LKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSAR 150

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++ E+DVV WN MI GY ++G   EAL LF+ M+   V P+E T V+V+SAC Q G
Sbjct: 151 KVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSG 210

Query: 122 ALESGRWIHSYI---ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           ++E GR +HS++   ++      ++++  ALI++YSKCG ++ A  +F+ ++ KDVV WN
Sbjct: 211 SIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWN 270

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR--------- 229
           ++I GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR         
Sbjct: 271 TLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKK 330

Query: 230 --------RFFNTMKDEYAIEPKVE---------------HYGCMVNLLSRAGQVEEAYK 266
                       ++ D YA    +E                +  M+   +  G+   A+ 
Sbjct: 331 LKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFD 390

Query: 267 LVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKI 299
           L   M   ++EPD + +  LL AC   G + LG +I
Sbjct: 391 LFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQI 426



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 34/257 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M+ G+A       AL ++ RM++    PN  +   +L +C +  A
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 123 LESGRWIHSYI-------------------------ENSRNI-----KVNVQVGTALINM 152
            E GR IH+ +                         E++R +       +V   TALI  
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+  G  + AR VFD + ++DVV WN+MI GY  +G  ++AL+LF EM R  ++P + T 
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 213 IGLLSACAHAGLVNEGRR---FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           + ++SACA +G +  GR+   + +   D++     ++    +++L S+ G VE A+ L  
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFE 259

Query: 270 DMKIEPDSVLWGTLLGA 286
            +  + D V W TL+G 
Sbjct: 260 GLSCK-DVVSWNTLIGG 275



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 32/176 (18%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TSL+D+YA+ GD+ +A ++F +M  RSL S   M+  +A                     
Sbjct: 342 TSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFA--------------------- 380

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
                      HG AN A  LF RM   +VEP+++T V +LSAC   G L+ GR I   +
Sbjct: 381 ----------MHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSM 430

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
               N+   ++    +I++    G  K+A  ++     + D V+W S++     HG
Sbjct: 431 TQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHG 486


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/483 (47%), Positives = 320/483 (66%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEV 57
           ++ +L  D +    ++    + GD+ S E +   + +    R++   T+++  YAK G +
Sbjct: 205 LEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNM 264

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             AR +FD M EKD+V W  MI GYA +GL  EA+ LF +M  E V+P+  T V VLSAC
Sbjct: 265 EKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSAC 324

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
            ++GALE G W+   ++ +  +  N  +GTALI++Y+KCGS+  A  VF  + +KD VVW
Sbjct: 325 ARLGALELGEWVSGLVDRNEFL-YNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVW 383

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N++I G AM+G+ K +  LF ++ ++ +KP   TFIGLL  C HAGLV+EGRR+FN+M  
Sbjct: 384 NAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR 443

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +++ P +EHYGCMV+LL RAG ++EA++L+ +M +E ++++WG LLGACR+H +  L E
Sbjct: 444 FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAE 503

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
              + LI     NSG YVLLSNIY+A   WD  A+VR  M EK +QK PGCS IE+   V
Sbjct: 504 LALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIV 563

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFL GD  HP S++IY  L+E+   +K  GYVP T  VL DI E++K++ L  HSEKLA
Sbjct: 564 HEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLA 623

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGLIS  P   I++VKNLRVC DCH   KLIS  TGR+I +RD NRFH F  G+CSC 
Sbjct: 624 IAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCN 683

Query: 478 DYW 480
           DYW
Sbjct: 684 DYW 686



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 153/252 (60%), Gaps = 5/252 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK G +  A  +FDD+ +K+VV W  +I GY   G   EA+ +FRR+L   + 
Sbjct: 151 TSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLA 210

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T V VLSAC Q+G L SG WIH  I     ++ NV VGT+L++MY+KCG+++ AR 
Sbjct: 211 PDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR-NVFVGTSLVDMYAKCGNMEKARS 269

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + +KD+V W +MI GYA++G  K+A+ LF +M R  +KP   T +G+LSACA  G 
Sbjct: 270 VFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGA 329

Query: 225 VNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  G      + ++E+   P +     +++L ++ G +  A+++   MK E D V+W  +
Sbjct: 330 LELGEWVSGLVDRNEFLYNPVLGT--ALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAI 386

Query: 284 LGACRLHGNIAL 295
           +    ++G + +
Sbjct: 387 ISGLAMNGYVKI 398



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 152/332 (45%), Gaps = 37/332 (11%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L  +L C     +    R LF  +++ ++  WN MI G   +   ++A+  +  M +E  
Sbjct: 49  LNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF 108

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T   VL AC ++  L+ G  IH+ +        +V V T+L+ +Y+KCG L+DA 
Sbjct: 109 LPNNFTFPFVLKACARLLDLQLGVKIHTLVVKG-GFDCDVFVKTSLVCLYAKCGYLEDAH 167

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + DK+VV W ++I GY   G  ++A+ +F  +  + L P   T + +LSAC   G
Sbjct: 168 KVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLG 227

Query: 224 LVNEG-------------RRFF--NTMKDEYA---------------IEPKVEHYGCMVN 253
            +N G             R  F   ++ D YA                E  +  +G M+ 
Sbjct: 228 DLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 287

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN--L 308
             +  G  +EA  L + M+   ++PD      +L AC   G + LGE ++  L+ +N  L
Sbjct: 288 GYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSG-LVDRNEFL 346

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            N      L ++YA  G+      V   MKEK
Sbjct: 347 YNPVLGTALIDLYAKCGSMSRAWEVFKGMKEK 378


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 214/441 (48%), Positives = 303/441 (68%), Gaps = 1/441 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SLV  T  +  Y K G+V +AR +FD  + KD++ W+ MI  YAQ+   +EA  +F  M 
Sbjct: 362 SLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMT 421

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              + PNE T V++L  C + G+LE G+WIHSYI+  + IK ++ + T+ ++MY+ CG +
Sbjct: 422 GCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDK-QGIKGDMILKTSFVDMYANCGDI 480

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             A  +F    D+D+ +WN+MI G+AMHG G+ AL+LF EM  + + P+DITFIG L AC
Sbjct: 481 DTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHAC 540

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H+GL+ EG+R F+ M  E+   PKVEHYGCMV+LL RAG ++EA++L+  M + P+  +
Sbjct: 541 SHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAV 600

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           +G+ L AC+LH NI LGE  A+  +S     SG  VL+SNIYA+   W  VA +R  MK+
Sbjct: 601 FGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKD 660

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           +G+ KEPG SSIE++  +HEF+ GD  HP +K++Y M++E+   L+  GY P    VLH+
Sbjct: 661 EGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHN 720

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           I +++K ++L  HSEKLA+A+GLIST PG  I+IVKNLRVC DCH   KL+SK  GR+I+
Sbjct: 721 IDKEKKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREII 780

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RDRNRFHHF  G+CSC DYW
Sbjct: 781 VRDRNRFHHFKEGSCSCCDYW 801



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 137/249 (55%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +A AR +FD + +  ++ W  MI  Y      NE + LF +ML E + 
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDAR 163
           PNE+T ++++  CG  GALE G+ +H++    RN   +++ + TA I+MY KCG ++ AR
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAF--TLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD    KD+++W++MI  YA +    +A  +F  M    ++P++ T + LL  CA AG
Sbjct: 384 SVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG 443

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G ++ ++  D+  I+  +      V++ +  G ++ A++L  +   + D  +W  +
Sbjct: 444 SLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAM 501

Query: 284 LGACRLHGN 292
           +    +HG+
Sbjct: 502 ISGFAMHGH 510



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 161/325 (49%), Gaps = 39/325 (12%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y++ G +A AR+LFD +E KDVV W+ MI  Y + GL +EAL L R M   +V+P
Sbjct: 164 ALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKP 223

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           +E+  +++     ++  L+ G+ +H+Y+  N +  K  V + TALI+MY KC +L  AR 
Sbjct: 224 SEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARR 283

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD ++   ++ W +MI  Y       + ++LF +M    + P++IT + L+  C  AG 
Sbjct: 284 VFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGA 343

Query: 225 VNEGRRFFN-TMKDEYAIE-----PKVEHYG------------------------CMVNL 254
           +  G+     T+++ + +        ++ YG                         M++ 
Sbjct: 344 LELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISS 403

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
            ++   ++EA+ + + M    I P+     +LL  C   G++ +G+ I  Y+  Q +   
Sbjct: 404 YAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGI--K 461

Query: 312 GTYVL---LSNIYAAIGNWDGVARV 333
           G  +L     ++YA  G+ D   R+
Sbjct: 462 GDMILKTSFVDMYANCGDIDTAHRL 486



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           + +I  Y ++    +A  ++  M     E +     +VL AC  I +   G+ +H ++  
Sbjct: 93  SFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVK 152

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           +     +V V  ALI MYS+ GSL  ARL+FD++ +KDVV W++MI  Y   G   +AL 
Sbjct: 153 N-GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALD 211

Query: 196 LFNEMCRIRLKPSDITFIGL 215
           L  +M  +R+KPS+I  I +
Sbjct: 212 LLRDMHVMRVKPSEIGMISI 231



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 32/186 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  +  D+ + TS VD+YA  GD+ +A +LFA    R +     M++ +A  G   AA  
Sbjct: 457 KQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALE 516

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF++ME                               A  V PN++T +  L AC   G 
Sbjct: 517 LFEEME-------------------------------ALGVTPNDITFIGALHACSHSGL 545

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMI 181
           L+ G+ +   + +       V+    ++++  + G L +A  L+       ++ V+ S +
Sbjct: 546 LQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFL 605

Query: 182 VGYAMH 187
               +H
Sbjct: 606 AACKLH 611


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/495 (45%), Positives = 331/495 (66%), Gaps = 17/495 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFAT------------MPQR----SLVSLT 45
           VKF   +D +V ++LV +Y     +  A  LF              + +R    ++V   
Sbjct: 149 VKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWN 208

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            M+    + G++ +A+ LFD+M  + VV WNVMI GYAQ+G   EA+ LF+ M +  ++P
Sbjct: 209 IMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDP 268

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT V+VL A  +IGALE G+WIH Y   ++ ++++  +G+AL++MYSKCGS+  A  V
Sbjct: 269 NYVTLVSVLPAIARIGALELGKWIHLYAGKNK-VEIDDVLGSALVDMYSKCGSIDKALQV 327

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  ++ + W+++I  +AMHG  +DA+  F+ M +  + P+D+ +IG+LSAC+HAGLV
Sbjct: 328 FETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLV 387

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGR FF+ M     ++P++EHYGCMV+LL RAG +EEA +L+ +M IEPD V+W  LLG
Sbjct: 388 EEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLG 447

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC++H N+ +GE++AE L+     +SG+YV LSN+YA++GNW+ VARVR  MK   ++K+
Sbjct: 448 ACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKD 507

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCS IE+   +HEFL  D  H K+KEI  ML E++  L++ GY P T  V  +  E+++
Sbjct: 508 PGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQER 567

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             +L+ HSEK+AVAFGLIST P   +KIVKNLR+C DCHA  KLIS    R+I++RDR R
Sbjct: 568 ARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKR 627

Query: 466 FHHFVNGTCSCGDYW 480
           FH F +G+CSC DYW
Sbjct: 628 FHQFEHGSCSCMDYW 642



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 133/308 (43%), Gaps = 60/308 (19%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG---LANEALVL 94
           Q  L +   +  C     ++  AR +F  M E +  CWN ++   A+     L +EAL+L
Sbjct: 49  QDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALML 108

Query: 95  FRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIE------------------- 134
           F  ML + +V+PN  T  +VL AC +   L  G+ IH  I                    
Sbjct: 109 FSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYV 168

Query: 135 ---------------------------NSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
                                      + R    NV +   +I+   + G +K A+ +FD
Sbjct: 169 MCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFD 228

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
            +  + VV WN MI GYA +G   +A+ LF EM    + P+ +T + +L A A  G +  
Sbjct: 229 EMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALEL 288

Query: 228 GRRFFNTMKDEYAIEPKVE----HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           G+         YA + KVE        +V++ S+ G +++A + V +   + +++ W  +
Sbjct: 289 GKWI-----HLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQ-VFETLPKRNAITWSAI 342

Query: 284 LGACRLHG 291
           +GA  +HG
Sbjct: 343 IGAFAMHG 350


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/461 (46%), Positives = 307/461 (66%), Gaps = 1/461 (0%)

Query: 20  YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           Y +G  V  A++LF  MP R++ +  TM+T YA+ G+++ A+ LFD M ++D V W  MI
Sbjct: 317 YVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 376

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GY+Q G + EAL LF  M  E    N  +  + LS C  + ALE G+ +H  +      
Sbjct: 377 AGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GY 435

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           +    VG AL+ MY KCGS+++A  +F  +  KD+V WN+MI GY+ HGFG++AL+ F  
Sbjct: 436 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFES 495

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M R  LKP D T + +LSAC+H GLV++GR++F+TM  +Y + P  +HY CMV+LL RAG
Sbjct: 496 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAG 555

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
            +EEA+ L+ +M  EPD+ +WGTLLGA R+HGN  L E  A+ + +    NSG YVLLSN
Sbjct: 556 LLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 615

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           +YA+ G W  V ++R  M++KGV+K PG S IE+ NK H F  GD  HP+  EI+  LE+
Sbjct: 616 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLED 675

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           ++  +K  GYV +T +VLHD+ E++K+  +  HSE+LAVA+G++    G  I+++KNLRV
Sbjct: 676 LDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRV 735

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K ++K TGR I++RD NRFHHF +G+CSCGDYW
Sbjct: 736 CEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 150/342 (43%), Gaps = 65/342 (19%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           S D D+      +  Y R G    A ++F  MP+ S VS   M++ Y + GE   AR+LF
Sbjct: 54  SGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLF 113

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D+M E+D+V WNVMI GY ++    +A  LF RM    V     +   +LS   Q G ++
Sbjct: 114 DEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV----CSWNTILSGYAQNGCVD 169

Query: 125 SGR-------------W---IHSYIENSRNIKVNVQVGT----------ALINMYSKCGS 158
             R             W   + +Y++NS+  +  V  G+           L+  + K   
Sbjct: 170 DARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKK 229

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDI-TFIGLL 216
           + +AR  FD +  +DVV WN++I GYA +G   +A QLF+E       P  D+ T+  ++
Sbjct: 230 IVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE------SPVHDVFTWTAMV 283

Query: 217 SACAHAGLVNEGRRFFNTM------------------------KDEYAIEP--KVEHYGC 250
           S      +V E R  F+ M                        K+ + + P   V  +  
Sbjct: 284 SGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNT 343

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           M+   ++ G++ EA K + D   + D V W  ++      G+
Sbjct: 344 MITGYAQCGKISEA-KNLFDKMPKRDPVSWAAMIAGYSQSGH 384


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/482 (46%), Positives = 322/482 (66%), Gaps = 5/482 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   + D++V  SLV++Y+    ++ A+++F  MPQR +++ T+++  YA +GE+  AR
Sbjct: 184 VKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRAR 243

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
            LFD M  ++ V W VM+ GY  H   NEAL  F  ML  ++V+PNE   V++LSAC  +
Sbjct: 244 ELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHL 303

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ G+WIH YI+ +R I ++  + TALI+MY+KCG +  AR VFD ++ +D++ W SM
Sbjct: 304 GALDQGKWIHVYIDKNR-ILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSM 362

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G +MHG G + L  F+EM     KP DIT +G+L+ C+H+GLV EG   F+ M   + 
Sbjct: 363 ISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWG 422

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I PK+EHYGC+++LL RAG++E A++ +  M +EPD V W  LL ACR+HG++ LGE+I 
Sbjct: 423 IVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERII 482

Query: 301 EYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++      ++ G YVLLSN+YA++G W+ V +VR  M ++G +  PGCS IE+   VHE
Sbjct: 483 NHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHE 542

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           FLA D  HP+  EI   L E+   +  E GYVP T+ VL D+ E+ K+ ++  HSEKLAV
Sbjct: 543 FLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAV 602

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGL+STQ GT I+I KNLR C DCH+  K IS    R+I++RDR+RFH F  G CSC D
Sbjct: 603 AFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTD 661

Query: 479 YW 480
           YW
Sbjct: 662 YW 663



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 152/331 (45%), Gaps = 47/331 (14%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTML----TCYAKQGE 56
           T  FSL       ++ V L  +   +   +++ A +    L   T++L      Y     
Sbjct: 47  TSSFSLPSH----STFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRN 102

Query: 57  VAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAV 113
           ++ AR++FD        + WN+MI  Y++   + E+L LF +MLA       ++ T   V
Sbjct: 103 LSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFV 162

Query: 114 LSACGQIGALES-GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
            +AC +   L   G  +H  +      + ++ VG +L+NMYS    + DA+ VFD +  +
Sbjct: 163 FTACSRHPTLRGYGENVHGMVVKD-GYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQR 221

Query: 173 DVVVWNSMIVGYAM-------------------------------HGFGKDALQLFNEM- 200
           DV+ W S++ GYAM                               H F  +ALQ FN+M 
Sbjct: 222 DVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDML 281

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
           C   +KP++   + +LSACAH G +++G ++ +   D+  I         ++++ ++ G+
Sbjct: 282 CHDEVKPNEAVLVSILSACAHLGALDQG-KWIHVYIDKNRILLSSNISTALIDMYAKCGR 340

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ A + V D   + D + W +++    +HG
Sbjct: 341 IDCARR-VFDGLHKRDLLTWTSMISGLSMHG 370


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/442 (49%), Positives = 308/442 (69%), Gaps = 1/442 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R +V  T ++  Y K G V  AR LFD  +EK++  WN+MI+G+ +     EAL+LFR M
Sbjct: 220 RHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM 279

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             + ++ ++VT  ++L AC  +GALE G+W+H+YI+  R I V+V +GTAL++MY+KCGS
Sbjct: 280 QTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQR-IDVDVALGTALVDMYAKCGS 338

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++ A  VF  + +KDV+ W ++I+G AM G  ++ALQ F+EM    +KP  ITF+G+L+A
Sbjct: 339 IETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAA 398

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+HAG V+EG   FN+M D Y I+P +EHYG +V++L RAG++ EA +L+  M + PD  
Sbjct: 399 CSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQF 458

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           + G LLGACR+HGN+   E+ A+ L+  +  +SGTYVLLSNIY +   W+   R R LM 
Sbjct: 459 VLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMA 518

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           E+G++K PGCS IE+   VHEF+ GD  H +S EI  MLE++   LK  GYVP    VL 
Sbjct: 519 ERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLF 578

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           D+ E++K+  L +HSEKLA+AFGL+ST  GT I++VKNLR+C DCH+  KLISK   R+I
Sbjct: 579 DMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREI 638

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDRNRFHHF +GTCSC  +W
Sbjct: 639 IVRDRNRFHHFKDGTCSCRGFW 660



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 4/240 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVE 104
           T++  Y+  G + +AR +FD ME+K VV W  MI  +AQ    NEA+ LF RM+ +E V+
Sbjct: 125 TLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVK 184

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNEVT V VL+AC +   L   + IH YI +      +V + T L+++Y KCG ++ AR 
Sbjct: 185 PNEVTLVNVLTACARARDLAMVKRIHEYI-DEHGFGRHVVLNTVLMDVYCKCGCVQLARD 243

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD+  +K++  WN MI G+      ++AL LF EM    +K   +T   LL AC H G 
Sbjct: 244 LFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGA 303

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G+     +K +  I+  V     +V++ ++ G +E A ++  +M  E D + W  L+
Sbjct: 304 LELGKWLHAYIKKQ-RIDVDVALGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALI 361



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 49/330 (14%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVA 112
           + G +  AR++F  +        N +I G     L  EAL+ ++ M+ + + P+  T  +
Sbjct: 34  ESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +  +C        G+ IH +         +      L+NMYS CG L  AR VFD++ DK
Sbjct: 94  LFKSCRNSS---EGKQIHCH-STKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDK 149

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHA--------- 222
            VV W +MI  +A      +A++LF+ M +   +KP+++T + +L+ACA A         
Sbjct: 150 TVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRI 209

Query: 223 --------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
                                     G V   R  F+      A E  +  +  M+N   
Sbjct: 210 HEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDK-----AQEKNLFSWNIMINGHV 264

Query: 257 RAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSG 312
                EEA  L  +M+   I+ D V   +LL AC   G + LG+ +  Y+  Q +  +  
Sbjct: 265 EDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVA 324

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
               L ++YA  G+ +   +V   M EK V
Sbjct: 325 LGTALVDMYAKCGSIETAIQVFHEMPEKDV 354



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  +D D+ + T+LVD+YA+ G + +A ++F  MP++ +++ T +               
Sbjct: 316 KQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTAL--------------- 360

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                           I G A  G A  AL  F  M  + V+P+ +T V VL+AC   G 
Sbjct: 361 ----------------ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGF 404

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           ++ G    + + ++  I+  ++    L+++  + G + +A  L+       D  V   ++
Sbjct: 405 VDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLL 464

Query: 182 VGYAMHG 188
               +HG
Sbjct: 465 GACRIHG 471


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/479 (45%), Positives = 320/479 (66%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  ++  + +  +L+ +Y+  G+++ A+KLF        +S  +M++   K G V  AR
Sbjct: 331 IRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKAR 390

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M EKD+V W+ +I GYAQH   +E L LF  M   ++ P+E   V+V+SAC  + 
Sbjct: 391 ALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLA 450

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G+W+H+YI  +  +KVNV +GT L++MY KCG +++A  VF+ + +K V  WN++I
Sbjct: 451 ALDQGKWVHAYIRKN-GLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALI 509

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G A++G  + +L +F+EM    + P++ITF+G+L AC H GLV+EGR  F +M +++ I
Sbjct: 510 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 569

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP V+HYGCMV+LL RAG + EA KL+  M + PD   WG LLGAC+ HG+  +GE++  
Sbjct: 570 EPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGR 629

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     + G +VLLSNI+A+ G+W+ V  VR +MK++GV K PGCS IE +  VHEFL
Sbjct: 630 KLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFL 689

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  HP   ++  ML E+   LK EGY P T  V  DI E++K+ +L  HSEKLA+AFG
Sbjct: 690 AGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFG 749

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++  P T I+I+KNLR+C DCH   KLISK   R+I++RDR+RFH+F  G CSC DYW
Sbjct: 750 LLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 193/416 (46%), Gaps = 101/416 (24%)

Query: 2   VKFSLDKDLYVSTSLVDLYA-------------------------------RGGDVLSAE 30
           +K   D D+YV  +L+++YA                               + GDV  A+
Sbjct: 168 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAK 227

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
            +F  MPQR++V+  +M+    K G+V  A  LF++M+EKD+V W+ +I GY Q+G+  E
Sbjct: 228 LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEE 287

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           ALV+F  M A  +  +EV  V+VLSAC  +  +++G+ IH  +     I+  V +  ALI
Sbjct: 288 ALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR-MGIESYVNLQNALI 346

Query: 151 NMYS-------------------------------KCGSLKDARLVFDRVNDKDVVVWNS 179
           +MYS                               KCGS++ AR +FD + +KD+V W++
Sbjct: 347 HMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSA 406

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------- 232
           +I GYA H    + L LF+EM   +++P +   + ++SAC H   +++G+          
Sbjct: 407 VISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNG 466

Query: 233 --------NTMKDEY--------------AIEPK-VEHYGCMVNLLSRAGQVEEAYKLVM 269
                    T+ D Y               +E K V  +  ++  L+  G VE +  +  
Sbjct: 467 LKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFS 526

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALG-----EKIAEYLISQNLANSGTYVLL 317
           +MK   + P+ + +  +LGACR  G +  G       I ++ I  N+ + G  V L
Sbjct: 527 EMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDL 582



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 18/261 (6%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD +E  +   WN M+  Y Q   A +AL+L++ M+   V P+  T   V+ AC  +  
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRL 155

Query: 123 LE-SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           LE  G+ IH ++        +V V   LINMY+ CG+++DAR +FD     D V WNS++
Sbjct: 156 LEFGGKEIHDHVLKV-GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY   G  ++A  +F++M +  +  S+   + L       G V E  + FN M ++  +
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLL----GKMGQVMEAWKLFNEMDEKDMV 270

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK 298
                 +  +++   + G  EEA  + ++M    +  D V+  ++L AC     +  G+ 
Sbjct: 271 S-----WSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKM 325

Query: 299 IAEYLISQNLANSGTYVLLSN 319
           I   +I   +    +YV L N
Sbjct: 326 IHGLVIRMGIE---SYVNLQN 343


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/480 (45%), Positives = 313/480 (65%), Gaps = 2/480 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            K   + D+Y   SL++ YA  G+   A  LF  +P+   VS  +++  Y K G++  A 
Sbjct: 142 TKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIAL 201

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF  M EK+ + W  MI GY Q  +  EAL LF  M    VEP+ V+    LSAC Q+G
Sbjct: 202 TLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 261

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+WIHSY+  +R I+++  +G  LI+MY+KCG +++A  VF  +  K V  W ++I
Sbjct: 262 ALEQGKWIHSYLNKTR-IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALI 320

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG G++A+  F EM ++ +KP+ ITF  +L+AC++ GLV EG+  F +M+ +Y +
Sbjct: 321 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNL 380

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P +EHYGC+V+LL RAG ++EA + + +M ++P++V+WG LL ACR+H NI LGE+I E
Sbjct: 381 KPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGE 440

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI+ +  + G YV  +NI+A    WD  A  R LMKE+GV K PGCS+I L    HEFL
Sbjct: 441 ILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD-IGEKQKQNSLEVHSEKLAVAF 420
           AGD  HP+ ++I      +   L+  GYVP+ + +L D + + +++  +  HSEKLA+ +
Sbjct: 501 AGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITY 560

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI T+PGT I+I+KNLRVC DCH V KLISK   R I+MRDR RFHHF +G CSCGDYW
Sbjct: 561 GLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 161/359 (44%), Gaps = 42/359 (11%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDV--LSAEKLFATMPQRSLVSLTTMLTCYAKQGE-- 56
           +  FSL+ +LY + S +   ++  ++  + A  L   + Q S      +  C +      
Sbjct: 5   SCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           +  A+++FD  +  D   WN+MI G++       +L+L++RML      N  T  ++L A
Sbjct: 65  LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           C  + A E    IH+ I      + +V    +LIN Y+  G+ K A L+FDR+ + D V 
Sbjct: 125 CSNLSAFEETTQIHAQI-TKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183

Query: 177 WNSMIVGYAMHG-------------------------------FGKDALQLFNEMCRIRL 205
           WNS+I GY   G                                 K+ALQLF+EM    +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC-MVNLLSRAGQVEEA 264
           +P +++    LSACA  G + +G+   + +         V   GC ++++ ++ G++EEA
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEA 301

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
            ++  ++K +     W  L+     HG+    E I++++  Q +      +  + +  A
Sbjct: 302 LEVFKNIK-KKSVQAWTALISGYAYHGHGR--EAISKFMEMQKMGIKPNVITFTAVLTA 357


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/468 (47%), Positives = 312/468 (66%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  Y   G +  A +LF  MP +S+V+   M+ C+ + GEV  AR +FD M EKD  
Sbjct: 319 TAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEG 378

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MI  Y + GL  +AL LFR M  E + PN  + ++VLS C  +  L+ GR IH+ +
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             S+   ++V V + L++MY KCG+L  A+ VFDR   KDVV+WNS+I GYA HG G +A
Sbjct: 439 VRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEA 497

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L++F++M    + P D+TF+G+LSAC++ G V +G   FN+M+ +Y +E K+EHY CMV+
Sbjct: 498 LRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVD 557

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG++ EA  L+  M +E D+++WG LLGACR H  + L E  A+ L+     N+G 
Sbjct: 558 LLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGP 617

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKE 372
           ++LLSNIYA+ G WD VA +R  M+++ V K PGCS I +  KVH+F  GD   HP+  E
Sbjct: 618 FILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSE 677

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I  +LE ++G L+  GY P    VLHD+ E++K  SLE HSEKLAVA+GL+    G  I+
Sbjct: 678 INRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIR 737

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCHA  KLI+K TGR+I++RD NRFHHF +G+CSC DYW
Sbjct: 738 VMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 36/313 (11%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++++   T++V  Y + G +  AE LF  MP++++VS T ML    ++G +  A  LFD 
Sbjct: 188 ERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----------------------LAEKV- 103
           M EKDVV    MI GY Q G   EA +LF  M                      +A K+ 
Sbjct: 248 MPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF 307

Query: 104 ----EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
               E NEV+  A+L      G L+      S + N+  IK +V    A+I  + + G +
Sbjct: 308 EVMPEKNEVSWTAMLKGYTNCGRLDEA----SELFNAMPIK-SVVACNAMILCFGQNGEV 362

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             AR VFD++ +KD   W++MI  Y   G   DAL+LF  M R  ++P+  + I +LS C
Sbjct: 363 PKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVC 422

Query: 220 AHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           A    ++ GR     + + ++ ++  V     ++++  + G + +A K V D     D V
Sbjct: 423 AGLANLDHGREIHAQLVRSQFDLDVYVA--SVLLSMYIKCGNLAKA-KQVFDRFAVKDVV 479

Query: 279 LWGTLLGACRLHG 291
           +W +++     HG
Sbjct: 480 MWNSIITGYAQHG 492



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 23/280 (8%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           DK++    S+V  Y +      A+ +F  M +R+ +S   +++ Y   G +  AR +FD 
Sbjct: 126 DKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDR 185

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M E++VV W  M+ GY + G+ +EA  LF +M     E N V+   +L    Q G ++  
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQM----PEKNVVSWTVMLGGLLQEGRIDEA 241

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             +   +        +V   T +I  Y + G L +AR++FD +  ++VV W +MI GY  
Sbjct: 242 CRLFDMMPEK-----DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ 296

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +     A +LF  M     + +++++  +L    + G ++E    FN M       P   
Sbjct: 297 NQQVDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKS 345

Query: 247 HYGC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              C  M+    + G+V +A + V D   E D   W  ++
Sbjct: 346 VVACNAMILCFGQNGEVPKA-RQVFDQMREKDEGTWSAMI 384



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 19/244 (7%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++S  +++T Y++ G++  ARV+FD+M +K+++ WN ++ GY Q+    EA  +F +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
              E N ++   ++S     G +   R +       R  + NV   TA++  Y K G + 
Sbjct: 156 --SERNTISWNGLVSGYINNGMINEAREVF-----DRMPERNVVSWTAMVRGYVKEGMIS 208

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A  +F ++ +K+VV W  M+ G    G   +A +LF+ M     +   +T   ++    
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP----EKDVVTRTNMIGGYC 264

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G + E R  F+ M     +      +  M+    +  QV+ A KL   M  E + V W
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVS-----WTTMITGYVQNQQVDIARKLFEVMP-EKNEVSW 318

Query: 281 GTLL 284
             +L
Sbjct: 319 TAML 322



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D D+YV++ L+ +Y + G++  A+++F     + +V   +++T Y          
Sbjct: 439 VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY---------- 488

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHGL  EAL +F  M    + P++VT V VLSAC   G
Sbjct: 489 ---------------------AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTG 527

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ G  I + +E    ++  ++    ++++  + G L +A  + +++  + D ++W ++
Sbjct: 528 NVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGAL 587

Query: 181 IVGYAMH 187
           +     H
Sbjct: 588 LGACRTH 594


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/468 (47%), Positives = 312/468 (66%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  Y   G +  A +LF  MP +S+V+   M+ C+ + GEV  AR +FD M EKD  
Sbjct: 319 TAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEG 378

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MI  Y + GL  +AL LFR M  E + PN  + ++VLS C  +  L+ GR IH+ +
Sbjct: 379 TWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQL 438

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             S+   ++V V + L++MY KCG+L  A+ VFDR   KDVV+WNS+I GYA HG G +A
Sbjct: 439 VRSQ-FDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEA 497

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L++F++M    + P D+TF+G+LSAC++ G V +G   FN+M+ +Y +E K+EHY CMV+
Sbjct: 498 LRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVD 557

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG++ EA  L+  M +E D+++WG LLGACR H  + L E  A+ L+     N+G 
Sbjct: 558 LLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGP 617

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKE 372
           ++LLSNIYA+ G WD VA +R  M+++ V K PGCS I +  KVH+F  GD   HP+  E
Sbjct: 618 FILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSE 677

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I  +LE ++G L+  GY P    VLHD+ E++K  SLE HSEKLAVA+GL+    G  I+
Sbjct: 678 INRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIR 737

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCHA  KLI+K TGR+I++RD NRFHHF +G+CSC DYW
Sbjct: 738 VMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 36/313 (11%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++++   T++V  Y + G +  AE LF  MP++++VS T ML    ++G +  A  LFD 
Sbjct: 188 ERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDM 247

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----------------------LAEKV- 103
           M EKDVV    MI GY Q G   EA +LF  M                      +A K+ 
Sbjct: 248 MPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF 307

Query: 104 ----EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
               E NEV+  A+L      G L+      S + N+  IK +V    A+I  + + G +
Sbjct: 308 EVMPEKNEVSWTAMLKGYTNCGRLDEA----SELFNAMPIK-SVVACNAMILCFGQNGEV 362

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             AR VFD++ +KD   W++MI  Y   G   DAL+LF  M R  ++P+  + I +LS C
Sbjct: 363 PKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVC 422

Query: 220 AHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           A    ++ GR     + + ++ ++  V     ++++  + G + +A K V D     D V
Sbjct: 423 AGLANLDHGREIHAQLVRSQFDLDVYVA--SVLLSMYIKCGNLAKA-KQVFDRFAVKDVV 479

Query: 279 LWGTLLGACRLHG 291
           +W +++     HG
Sbjct: 480 MWNSIITGYAQHG 492



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 23/280 (8%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           DK++    S+V  Y +      A+ +F  M +R+ +S   +++ Y   G +  AR +FD 
Sbjct: 126 DKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDR 185

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M E++VV W  M+ GY + G+ +EA  LF +M     E N V+   +L    Q G ++  
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQM----PEKNVVSWTVMLGGLLQEGRIDEA 241

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             +   +        +V   T +I  Y + G L +AR++FD +  ++VV W +MI GY  
Sbjct: 242 CRLFDMMPEK-----DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ 296

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +     A +LF  M     + +++++  +L    + G ++E    FN M       P   
Sbjct: 297 NQQVDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKS 345

Query: 247 HYGC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              C  M+    + G+V +A + V D   E D   W  ++
Sbjct: 346 VVACNAMILCFGQNGEVPKA-RQVFDQMREKDEGTWSAMI 384



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 19/244 (7%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++S  +++T Y++ G++  ARV+FD+M +K+++ WN ++ GY Q+    EA  +F +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
              E N ++   ++S     G +   R +       R  + NV   TA++  Y K G + 
Sbjct: 156 --SERNTISWNGLVSGYINNGMINEAREVF-----DRMPERNVVSWTAMVRGYVKEGMIS 208

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A  +F ++ +K+VV W  M+ G    G   +A +LF+ M     +   +T   ++    
Sbjct: 209 EAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMP----EKDVVTRTNMIGGYC 264

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G + E R  F+ M     +      +  M+    +  QV+ A KL   M  E + V W
Sbjct: 265 QVGRLVEARMLFDEMPRRNVVS-----WTTMITGYVQNQQVDIARKLFEVMP-EKNEVSW 318

Query: 281 GTLL 284
             +L
Sbjct: 319 TAML 322



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D D+YV++ L+ +Y + G++  A+++F     + +V   +++T Y          
Sbjct: 439 VRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY---------- 488

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHGL  EAL +F  M    + P++VT V VLSAC   G
Sbjct: 489 ---------------------AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTG 527

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ G  I + +E    ++  ++    ++++  + G L +A  + +++  + D ++W ++
Sbjct: 528 NVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGAL 587

Query: 181 IVGYAMH 187
           +     H
Sbjct: 588 LGACRTH 594


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/438 (49%), Positives = 304/438 (69%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K GEV  A  LF+ +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 258 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 317

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDA 162
            PN+VT +++L AC  +GA+E GRWIH YI        N     T+LI+MY+KCG ++ A
Sbjct: 318 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 377

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD + ++ +  WN+MI G+AMHG    A  +F+ M +  ++P DITF+GLLSAC+H+
Sbjct: 378 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 437

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F +MK++Y I PK+EHYGCM++LL  +G  +EA +++  M++EPD V+W +
Sbjct: 438 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 497

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++HGN+ LGE  A+ LI     N G+YVLLSNIYA  G W+ VA++R L+ +KG+
Sbjct: 498 LLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 557

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 558 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 617

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 618 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 677

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC DYW
Sbjct: 678 RTRFHHFRDGVCSCNDYW 695



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 187/356 (52%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +Y + G +  A K+F     R +VS T ++T YA +G +A+A+
Sbjct: 115 LKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQ 174

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN MI GYA+ G   EAL LF+ M+   V P+E T V+V+SAC Q  
Sbjct: 175 KMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSA 234

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I++      N+++  ALI++Y KCG ++ A  +F+ ++ KDV+ WN++I
Sbjct: 235 SIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLI 293

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF--------- 232
            GY      K+AL LF EM R    P+D+T + +L ACAH G +  GR            
Sbjct: 294 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG 353

Query: 233 --------NTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+   A+ +  
Sbjct: 354 VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFS 413

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD + +  LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 414 RMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 469



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M  G+A       AL L+  M++  + PN  T   +L +C +  A
Sbjct: 44  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 103

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------------- 168
              G+ IH ++       +++ V T+LI+MY + G L+DAR VFD+              
Sbjct: 104 FREGQQIHGHVLK-LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 162

Query: 169 -----------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN+MI GYA  G  K+AL+LF EM +  ++P + T
Sbjct: 163 GYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 222

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + ++SACA +  +  GR+  + + D++     ++    +++L  + G+VE A  L   +
Sbjct: 223 MVSVVSACAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGL 281

Query: 272 KIEPDSVLWGTLLGA 286
             + D + W TL+G 
Sbjct: 282 SYK-DVISWNTLIGG 295



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 18/209 (8%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + + ++++WN+M  G+A+      AL L+  M  + L P+  TF  LL +CA +  
Sbjct: 44  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 103

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG++   + +K  Y ++  V  +  ++++  + G++E+A K V D     D V +  L
Sbjct: 104 FREGQQIHGHVLKLGYDLDLYV--HTSLISMYVQNGRLEDARK-VFDQSSHRDVVSYTAL 160

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +      G IA  +K+ + +  +++ +    +   + YA  GN      +   M +  V+
Sbjct: 161 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMI---SGYAETGNNKEALELFKEMMKTNVR 217

Query: 344 KEPGC-----------SSIELSNKVHEFL 361
            +              +SIEL  +VH ++
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWI 246


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/437 (47%), Positives = 299/437 (68%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y +  EV  AR LFD+  EK +  WN MI GY Q+GL + A+ LF+ M+ + + 
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LS 412

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++LSAC Q+GAL  G+W+H  I++ R ++ NV V TAL++MY+KCGS+ +AR 
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSER-LESNVYVSTALVDMYAKCGSIVEARQ 471

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD + DK+VV WN+MI GY +HG GK+AL+LF EM +  + P+ +TF+ +L AC+H+GL
Sbjct: 472 LFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGL 531

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F++M + Y  +P  EHY CMV++L RAGQ+  A + +  M +EP   +WG LL
Sbjct: 532 VSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALL 591

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC +H N  +    ++ L   +  N G YVLLSNIY+   N+   A VR ++K++ + K
Sbjct: 592 GACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAK 651

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT-QIVLHDIGEK 403
            PGC+ IE+ ++ + F +GD  HP++  I+ MLE++ G ++  GY  +T    LHD+ ++
Sbjct: 652 TPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDE 711

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  + VHSEKLA+AFGLIST+PGT I+I+KNLRVC DCH   K ISK T R I++RD 
Sbjct: 712 EKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDA 771

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF NG CSCGDYW
Sbjct: 772 NRFHHFKNGICSCGDYW 788



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 139/320 (43%), Gaps = 36/320 (11%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  D+YV T L+ LY++ G       LF  + Q  L+S   M               
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM--------------- 286

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                           I GY  +     A+ LFR +LA     N  T V ++        
Sbjct: 287 ----------------ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+  R I + +     I +   V TAL  +Y +   ++ AR +FD   +K +  WN+MI 
Sbjct: 331 LQLSRLIQN-LSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMIS 389

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY  +G    A+ LF EM   +L P+ +T   +LSACA  G ++ G+     +K E  +E
Sbjct: 390 GYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLE 447

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             V     +V++ ++ G + EA +L  D+ ++ + V W  ++    LHG+     K+   
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQL-FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYE 506

Query: 303 LISQNLANSGTYVLLSNIYA 322
           ++   +  +G    LS +YA
Sbjct: 507 MLQSGIPPTGV-TFLSILYA 525



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 152/332 (45%), Gaps = 36/332 (10%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K      AR +FD M E+D V WN MI G++++    +++ +F  ML   + 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T   VL+A  ++     G  I   + + + +  +V V T LI++YSKCG     R+
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQC-LASKKGLHSDVYVLTGLISLYSKCGKSCKGRI 270

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD+++  D++ +N+MI GY  +   + A+ LF E+     + +  T +GL+        
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330

Query: 225 VNEGRRFFN-TMKDEYAIEPKVE-----------------------------HYGCMVNL 254
           +   R   N ++K    ++P V                               +  M++ 
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISG 390

Query: 255 LSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            ++ G  + A  L  +M  ++ P+ V   ++L AC   G +++G+ +   + S+ L  S 
Sbjct: 391 YTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERL-ESN 449

Query: 313 TYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            YV   L ++YA  G+     ++  LM +K V
Sbjct: 450 VYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 147/312 (47%), Gaps = 5/312 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML- 99
           L S+T +   +   G VA  R LF+ + + D+  +NV+I G++ +GL   ++ L+  +  
Sbjct: 46  LSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRK 105

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              + P+  T    +SA  ++     G  +H++      +  N+ VG+A++++Y K    
Sbjct: 106 XTNLRPDNFTYAFAISAASRLEDERVGVLLHAH-SIVDGVASNLFVGSAIVDLYFKFTRA 164

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + AR VFD + ++D V+WN+MI G++ + + +D++++F +M  + L     T   +L+A 
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A       G      +  +  +   V     +++L S+ G+  +  +++ D   +PD + 
Sbjct: 225 AELQEYRLGMG-IQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG-RILFDQIDQPDLIS 282

Query: 280 WGTLLGACRL-HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +  ++      H   +      E L S    NS T V L  +Y    +      ++ L  
Sbjct: 283 YNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342

Query: 339 EKGVQKEPGCSS 350
           + G+  +P  S+
Sbjct: 343 KIGIILQPSVST 354



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 32/183 (17%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+ ++YVST+LVD+YA+ G ++ A +LF  M  +++V+   M+T                
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT---------------- 489

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GY  HG   EAL LF  ML   + P  VT +++L AC   G +  
Sbjct: 490 ---------------GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSE 534

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
           G  I   + N+   +   +    ++++  + G L +A    +R+  +    VW +++   
Sbjct: 535 GNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGAC 594

Query: 185 AMH 187
            +H
Sbjct: 595 MIH 597


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/437 (47%), Positives = 299/437 (68%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y +  EV  AR LFD+  EK +  WN MI GY Q+GL + A+ LF+ M+ + + 
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LS 412

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++LSAC Q+GAL  G+W+H  I++ R ++ NV V TAL++MY+KCGS+ +AR 
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSER-LESNVYVSTALVDMYAKCGSIVEARQ 471

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD + DK+VV WN+MI GY +HG GK+AL+LF EM +  + P+ +TF+ +L AC+H+GL
Sbjct: 472 LFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGL 531

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F++M + Y  +P  EHY CMV++L RAGQ+  A + +  M +EP   +WG LL
Sbjct: 532 VSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALL 591

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC +H N  +    ++ L   +  N G YVLLSNIY+   N+   A VR ++K++ + K
Sbjct: 592 GACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAK 651

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT-QIVLHDIGEK 403
            PGC+ IE+ ++ + F +GD  HP++  I+ MLE++ G ++  GY  +T    LHD+ ++
Sbjct: 652 TPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDE 711

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  + VHSEKLA+AFGLIST+PGT I+I+KNLRVC DCH   K ISK T R I++RD 
Sbjct: 712 EKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDA 771

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF NG CSCGDYW
Sbjct: 772 NRFHHFKNGICSCGDYW 788



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 139/320 (43%), Gaps = 36/320 (11%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  D+YV T L+ LY++ G       LF  + Q  L+S   M               
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM--------------- 286

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                           I GY  +     A+ LFR +LA     N  T V ++        
Sbjct: 287 ----------------ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+  R I + +     I +   V TAL  +Y +   ++ AR +FD   +K +  WN+MI 
Sbjct: 331 LQLSRLIQN-LSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMIS 389

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY  +G    A+ LF EM   +L P+ +T   +LSACA  G ++ G+     +K E  +E
Sbjct: 390 GYTQNGLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSE-RLE 447

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             V     +V++ ++ G + EA +L  D+ ++ + V W  ++    LHG+     K+   
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQL-FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYE 506

Query: 303 LISQNLANSGTYVLLSNIYA 322
           ++   +  +G    LS +YA
Sbjct: 507 MLQSGIPPTGV-TFLSILYA 525



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 152/332 (45%), Gaps = 36/332 (10%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K      AR +FD M E+D V WN MI G++++    +++ +F  ML   + 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T   VL+A  ++     G  I   + + + +  +V V T LI++YSKCG     R+
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQC-LASKKGLHSDVYVLTGLISLYSKCGKSCKGRI 270

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD+++  D++ +N+MI GY  +   + A+ LF E+     + +  T +GL+        
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNH 330

Query: 225 VNEGRRFFN-TMKDEYAIEPKVE-----------------------------HYGCMVNL 254
           +   R   N ++K    ++P V                               +  M++ 
Sbjct: 331 LQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISG 390

Query: 255 LSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            ++ G  + A  L  +M  ++ P+ V   ++L AC   G +++G+ +   + S+ L  S 
Sbjct: 391 YTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERL-ESN 449

Query: 313 TYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            YV   L ++YA  G+     ++  LM +K V
Sbjct: 450 VYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 148/312 (47%), Gaps = 5/312 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L S+T +   +   G VA  R LF+ + + D+  +NV+I G++ +GL   ++ L+  +  
Sbjct: 46  LSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRK 105

Query: 101 E-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           +  + P+  T    +SA  ++     G  +H++      +  N+ VG+A++++Y K    
Sbjct: 106 KTNLRPDNFTYAFAISAASRLEDERVGVLLHAH-SIVDGVASNLFVGSAIVDLYFKFTRA 164

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + AR VFD + ++D V+WN+MI G++ + + +D++++F +M  + L     T   +L+A 
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A       G      +  +  +   V     +++L S+ G+  +  +++ D   +PD + 
Sbjct: 225 AELQEYRLGMG-IQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG-RILFDQIDQPDLIS 282

Query: 280 WGTLLGACRL-HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +  ++      H   +      E L S    NS T V L  +Y    +      ++ L  
Sbjct: 283 YNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSL 342

Query: 339 EKGVQKEPGCSS 350
           + G+  +P  S+
Sbjct: 343 KIGIILQPSVST 354



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 32/183 (17%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+ ++YVST+LVD+YA+ G ++ A +LF  M  +++V+   M+T                
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMIT---------------- 489

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GY  HG   EAL LF  ML   + P  VT +++L AC   G +  
Sbjct: 490 ---------------GYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSE 534

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
           G  I   + N+   +   +    ++++  + G L +A    +R+  +    VW +++   
Sbjct: 535 GNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGAC 594

Query: 185 AMH 187
            +H
Sbjct: 595 MIH 597


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/472 (47%), Positives = 319/472 (67%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V  +LVD+YA  GD+ +A  LF  M  RS+ S T++++   + G+V  AR LFD M 
Sbjct: 195 DQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMP 254

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+D + W  MIDGY Q G   +AL  FR M   KV  +E T V+V++AC Q+GALE+G W
Sbjct: 255 ERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEW 314

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
              Y+     IK++V VG ALI+MYSKCGS++ A  VF  ++++D   W ++I+G A++G
Sbjct: 315 ARIYM-GRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNG 373

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G++A+ +F  M R    P ++TF+G+L+AC HAGLV++GR FF +M + Y I P V HY
Sbjct: 374 RGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHY 433

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GC++++L RAG+++EA   +  M ++P+S +WGTLL +CR++GN  +GE  AE L+  + 
Sbjct: 434 GCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDP 493

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NS  Y+LLSN+YA    W  V R+R ++ EKG++KEPGCS IE++  +HEF+A D  HP
Sbjct: 494 DNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHP 553

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            +KEIY  LE +   L+  GYVP    VL ++ E++KQ  L  HSEKLAV F L++++  
Sbjct: 554 MNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESN 613

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             I+IVKNLR+C DCH   KLISK  GR++++RDR RFHHF +G+CSC DYW
Sbjct: 614 VIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 127/321 (39%), Gaps = 61/321 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VKF ++ + + ++SL+ +Y             A     +         C A  G      
Sbjct: 83  VKFGMESNAHAASSLIVMY-------------AARGDGAAARAVLEAACLATGGGAP--- 126

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                      V WN +I G+ + G    +   F  M+        VT V+VLSACG+  
Sbjct: 127 -----------VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGK 175

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL---------------------- 159
            L  G  +H  +  S  +  + +V  AL++MY++CG +                      
Sbjct: 176 DLLLGMQVHKRVLES-GVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVI 234

Query: 160 ---------KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                      AR +FD + ++D + W +MI GY   G  +DAL+ F  M   +++  + 
Sbjct: 235 SGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEF 294

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           T + +++ACA  G +  G  +         I+  V     ++++ S+ G +E A  +  D
Sbjct: 295 TMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKD 353

Query: 271 MKIEPDSVLWGTLLGACRLHG 291
           M    D   W  ++    ++G
Sbjct: 354 MH-NRDKFTWTAIILGLAVNG 373


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/437 (50%), Positives = 302/437 (69%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
            T++  YAK GE++ +R +FD MEE DV  WN +I  YAQ+GL+ EA  LF  M+   +V
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             N VT  AVL AC   GAL+ G+ IH  +     ++ N+ VGT++++MY KCG ++ AR
Sbjct: 297 RYNAVTLSAVLLACAHSGALQIGKCIHDQVVK-MELEDNLVVGTSIVDMYCKCGRVEMAR 355

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             FDR+  K+V  W  M+ GY MHG GK+A+++F EM R  +KP+ ITF+ +L+AC+HAG
Sbjct: 356 KAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAG 415

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L+ EG  +FN MK E+ +EP +EHY CMV+LL RAG ++EAY L+ +MK++PD ++WG+L
Sbjct: 416 LLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSL 475

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LGE  A  L   + +N G YVLLSNIYA  G WD V R+R LMK  G+ 
Sbjct: 476 LGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLL 535

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S +E   +VH FL GD  HP+ ++IY  L+E+N  L+  GY+P    VL+D+  +
Sbjct: 536 KTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVE 595

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K   L VHSEKLAVAFG++++ PG+ I+I+KNLR+C DCH   KLISK   R+I++RD 
Sbjct: 596 EKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDS 655

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 656 KRFHHFKDGLCSCGDYW 672



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 46/301 (15%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F    D++V+++L+D+Y++ G +  A KLF  +P+R++VS T+                 
Sbjct: 115 FGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTS----------------- 157

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR-MLAEKVEPNEVTAV----------A 112
                         MI GY Q+  A EA+ LF+  +L ++ + +E+  V           
Sbjct: 158 --------------MISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGC 203

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           V+SAC ++        +H  +   +  +  + VG  L++ Y+KCG +  +R VFD + + 
Sbjct: 204 VISACARVCVKSVTECVHG-LAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEET 262

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           DV  WNS+I  YA +G   +A  LF++M  R  ++ + +T   +L ACAH+G +  G+  
Sbjct: 263 DVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI 322

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            + +  +  +E  +     +V++  + G+VE A K    +K   +   W  ++    +HG
Sbjct: 323 HDQVV-KMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHG 380

Query: 292 N 292
           +
Sbjct: 381 H 381



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 55/327 (16%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +++  V  WN +I  +A+ G + +AL  F  M    + PN  T    + +C  +  L +G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 127 RWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           + IH  +++    +   ++ V +ALI+MYSKCG L DAR +FD + +++VV W SMI GY
Sbjct: 106 KQIHQQAFVFGYGS---DIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGY 162

Query: 185 AMHGFGKDALQLFNEMCRI----------RLKPSDITFIG-LLSACA-----------HA 222
             +   ++A+ LF E   +               D   +G ++SACA           H 
Sbjct: 163 VQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHG 222

Query: 223 GLVNEGRR----FFNTMKDEYAI---------------EPKVEHYGCMVNLLSRAGQVEE 263
             V +G        NT+ D YA                E  V  +  ++ + ++ G   E
Sbjct: 223 LAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVE 282

Query: 264 AYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVL 316
           A+ L  DM    ++  ++V    +L AC   G + +G+ I + ++   L ++   GT ++
Sbjct: 283 AFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIV 342

Query: 317 LSNIYAAIGNWDGVARVRTLMKEKGVQ 343
             ++Y   G  +   +    +K K V+
Sbjct: 343 --DMYCKCGRVEMARKAFDRLKRKNVK 367



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 16/222 (7%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + +LV  T+++  Y K G V  AR  FD ++ K+V  W VM+ GY  HG   EA+ +F  
Sbjct: 332 EDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYE 391

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   ++PN +T V+VL+AC   G L+ G    + ++   +++  ++  + ++++  + G
Sbjct: 392 MIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAG 451

Query: 158 SLKDARLVFDRVNDK-DVVVWNSMIVGYAMHG---FGK-DALQLFNEMCRIRLKPSDITF 212
            LK+A  +   +  K D +VW S++    +H     G+  A +LF      +L PS+  +
Sbjct: 452 YLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLF------KLDPSNCGY 505

Query: 213 IGLLSAC-AHAGLVNEGRRFFNTMKDEYAIEPK----VEHYG 249
             LLS   A AG  ++  R    MK+   ++      VEH G
Sbjct: 506 YVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKG 547


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/474 (46%), Positives = 308/474 (64%), Gaps = 1/474 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           DK+     +++  Y +   +  A++LF  MP R++ S  TMLT YA+ G +  AR +F  
Sbjct: 352 DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGM 411

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M +KD V W  M+  Y+Q G + E L LF+ M       N      VLS C  I ALE G
Sbjct: 412 MPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECG 471

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             +HS +  +    V   VG AL+ MY KCGS+++A   F+ + ++DVV WN+MI GYA 
Sbjct: 472 MQLHSRLIKA-GYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYAR 530

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HGFGK+AL++F+ M +   KP DIT +G+L+AC+H+GLV +G  +F +M  ++ +  K E
Sbjct: 531 HGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPE 590

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CM++LL RAG+++EA  L+ DM  EPDS +WG LLGA R+H N  LG   AE +   
Sbjct: 591 HYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFEL 650

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              N+G YVLLSNIYA+ G W  V ++R +M E+GV+K PG S IE+ NKVH F  GD  
Sbjct: 651 EPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSV 710

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+ ++IY  LE+++  +K  GYV  T +VLHD+ E++K++ L+ HSEKLAVA+G++   
Sbjct: 711 HPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIP 770

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PG  I+++KNLRVC DCH  FK IS   GR I++RD NRFHHF +G+CSCGDYW
Sbjct: 771 PGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 23/284 (8%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +L+  Y +   +  A+K+F  MPQR +VS  TM++ YA++G++A AR LFD    +DV 
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVF 325

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  ++ GYAQ+G+  EA  +F  M     + N V+  A+++A  Q   +E  + +   +
Sbjct: 326 TWTAIVSGYAQNGMLEEAKRVFDAM----PDKNAVSWNAMMAAYVQRRMMEEAKELFDAM 381

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                   NV     ++  Y++ G L +AR +F  +  KD V W +M+  Y+  GF ++ 
Sbjct: 382 PCR-----NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEET 436

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMV 252
           LQLF EM R     +   F  +LS CA    +  G +  + + K  Y +       GC V
Sbjct: 437 LQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGV-------GCFV 489

Query: 253 N-----LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                 +  + G +EEA+    +M+ E D V W T++     HG
Sbjct: 490 GNALLAMYFKCGSMEEAHSAFEEME-ERDVVSWNTMIAGYARHG 532



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 147/337 (43%), Gaps = 71/337 (21%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA------ 60
           D ++      +  + R G V  AE+LFA MP+RS  +  TML  YA  G +  A      
Sbjct: 104 DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163

Query: 61  -------------------------RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
                                    R LFD+M  KD V +NVMI  +A HGL +    L 
Sbjct: 164 IPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVS----LA 219

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           R       E + V+   +L+A  + G ++  R +         I  N     AL+  Y +
Sbjct: 220 RHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWN-----ALMAGYVQ 274

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
              +++A+ +F+++  +DVV WN+M+ GYA  G   +A +LF+ +  IR      T+  +
Sbjct: 275 RSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD-VAPIR---DVFTWTAI 330

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAI----------------EPK----------VEHYG 249
           +S  A  G++ E +R F+ M D+ A+                E K          V  + 
Sbjct: 331 VSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWN 390

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            M+   ++AG ++EA + +  M  + D+V W  +L A
Sbjct: 391 TMLTGYAQAGMLDEA-RAIFGMMPQKDAVSWAAMLAA 426



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 126/265 (47%), Gaps = 20/265 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           KD      ++  +A  G V  A   F   P++  VS   ML  Y + G +  AR LFD  
Sbjct: 198 KDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSR 257

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E D + WN ++ GY Q     EA  +F +M    V    V+   ++S   + G +   R
Sbjct: 258 TEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSGYARRGDMAEAR 313

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +         I+ +V   TA+++ Y++ G L++A+ VFD + DK+ V WN+M+  Y   
Sbjct: 314 RLFDVAP----IR-DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQR 368

Query: 188 GFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
              ++A +LF+ M CR     +  ++  +L+  A AG+++E R  F  M  + A+     
Sbjct: 369 RMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVS---- 419

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271
            +  M+   S+ G  EE  +L  +M
Sbjct: 420 -WAAMLAAYSQIGFSEETLQLFKEM 443



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 118/271 (43%), Gaps = 19/271 (7%)

Query: 37  PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
           P   ++     +T + + G V  A  LF  M  +    +N M+ GYA +G   +AL  FR
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            +      P+  +   +L A G   +L   R +   +    ++  NV     +I+ ++  
Sbjct: 163 SI----PRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNV-----MISSHANH 213

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G +  AR  FD   +KD V WN M+  Y  +G  ++A +LF+     R +   I++  L+
Sbjct: 214 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDS----RTEWDAISWNALM 269

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +       + E ++ FN M         V  +  MV+  +R G + EA +L  D+    D
Sbjct: 270 AGYVQRSQIEEAQKMFNKMPQR-----DVVSWNTMVSGYARRGDMAEARRL-FDVAPIRD 323

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
              W  ++     +G +   +++ + +  +N
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN 354


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/483 (46%), Positives = 318/483 (65%), Gaps = 4/483 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+ +L+V+ +++ +YA  G V  A ++F     + L S   M+  Y   GE+  A
Sbjct: 58  AIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRA 117

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + +FD+M E+DVV W  +I GY Q G   EAL LF  ML     PNE T  + L+AC  +
Sbjct: 118 KEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANL 177

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDK-DVVVWN 178
            AL+ GRWIH YI+ S  IK+N ++  +L++MY+KCG +  A  VF D    K  V  WN
Sbjct: 178 VALDQGRWIHVYIDKSE-IKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWN 236

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +MI GYAMHG  K+A+ LF +M   ++ P+ +TF+ LL+AC+H  LV EGR +F +M   
Sbjct: 237 AMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASS 296

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           Y IEP++EHYGCMV+LL R+G ++EA + V +M + PD+ +WG LLGACR+H +I  G++
Sbjct: 297 YGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQR 356

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           I + +   +  + G +VLL+N+Y+A G WD    VR  ++  G +K PGCSSIEL+   H
Sbjct: 357 IGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFH 416

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLA 417
           +FL GD  HP++K++Y+ L+E+   LK  GYVP+   VL DI  E+ K+ +L  HSEKLA
Sbjct: 417 QFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLA 476

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGLI+T PGT+I+IVKNLRVC DCH   K ISK   R+I++RDR R+HHF +G CSC 
Sbjct: 477 IAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCK 536

Query: 478 DYW 480
           DYW
Sbjct: 537 DYW 539


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/452 (48%), Positives = 299/452 (66%), Gaps = 1/452 (0%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A++LF  MP R++ S  TMLT YA+ G +  A+ +FD M +KD V W  M+  Y+Q G +
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            E L LF  M       N      VLS C  I ALE G  +H  +  +    V   VG A
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 423

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ MY KCG+++DAR  F+ + ++DVV WN+MI GYA HGFGK+AL++F+ M     KP 
Sbjct: 424 LLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           DIT +G+L+AC+H+GLV +G  +F +M  ++ +  K EHY CM++LL RAG++ EA+ L+
Sbjct: 484 DITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLM 543

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            DM  EPDS +WG LLGA R+H N  LG   AE +      N+G YVLLSNIYA+ G W 
Sbjct: 544 KDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWR 603

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
              ++R +M+E+GV+K PG S IE+ NKVH F AGD  HP+ ++IY  LE+++  +K  G
Sbjct: 604 DARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAG 663

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YV  T +VLHD+ E++K++ L+ HSEKLAVA+G+++  PG  I+++KNLRVC DCH  FK
Sbjct: 664 YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            IS   GR I++RD NRFHHF  G+CSCGDYW
Sbjct: 724 YISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 23/289 (7%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+    +L+  Y + G +  A +LF  MP R +VS   M++ YA++G++  AR LFD   
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +DV  W  ++ GYAQ+G+  EA    RR+     E N V+  A+++A  Q   ++  + 
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEA----RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           + + +        NV     ++  Y++ G L++A+ VFD +  KD V W +M+  Y+  G
Sbjct: 308 LFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 362

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEH 247
             ++ LQLF EM R     +   F  +LS CA    +  G +    + +  Y +      
Sbjct: 363 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 416

Query: 248 YGCMVN-----LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            GC V      +  + G +E+A     +M+ E D V W T++     HG
Sbjct: 417 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 151/338 (44%), Gaps = 71/338 (21%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEV-------- 57
           L+ ++  S   +  + R G V  AE+LFA MP+RS  +   ML  Y+  G +        
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 58  -----------------------AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
                                  A AR LFD+M  +D V +NVMI  +A HGL +    L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVS----L 149

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
            R       E + V+   +L+A  + G +E  R +     NSR  + +V    AL++ Y 
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRT-EWDVISWNALMSGYV 204

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           + G + +AR +FDR+  +DVV WN M+ GYA  G   +A +LF+    +R      T+  
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA-APVR---DVFTWTA 260

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAI----------------EPK----------VEHY 248
           ++S  A  G++ E RR F+ M +  A+                E K          V  +
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             M+   ++AG +EEA K V D   + D+V W  +L A
Sbjct: 321 NTMLTGYAQAGMLEEA-KAVFDTMPQKDAVSWAAMLAA 357



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 20/265 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D      ++  +A  G V  A   F   P++  VS   ML  Y + G V  AR LF+  
Sbjct: 129 RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 188

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E DV+ WN ++ GY Q G  +EA  LF RM    V    V+   ++S   + G +   R
Sbjct: 189 TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEAR 244

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +     ++  ++ +V   TA+++ Y++ G L++AR VFD + +++ V WN+M+  Y   
Sbjct: 245 RLF----DAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 299

Query: 188 GFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
               +A +LFN M CR     +  ++  +L+  A AG++ E +  F+TM  + A+     
Sbjct: 300 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS---- 350

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271
            +  M+   S+ G  EE  +L ++M
Sbjct: 351 -WAAMLAAYSQGGCSEETLQLFIEM 374


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/483 (46%), Positives = 318/483 (65%), Gaps = 4/483 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+ +L+V+ +++ +YA  G V  A ++F     + L S   M+  Y   GE+  A
Sbjct: 143 AIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRA 202

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + +FD+M E+DVV W  +I GY Q G   EAL LF  ML     PNE T  + L+AC  +
Sbjct: 203 KEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANL 262

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDK-DVVVWN 178
            AL+ GRWIH YI+ S  IK+N ++  +L++MY+KCG +  A  VF D    K  V  WN
Sbjct: 263 VALDQGRWIHVYIDKSE-IKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWN 321

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +MI GYAMHG  K+A+ LF +M   ++ P+ +TF+ LL+AC+H  LV EGR +F +M   
Sbjct: 322 AMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASS 381

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           Y IEP++EHYGCMV+LL R+G ++EA + V +M + PD+ +WG LLGACR+H +I  G++
Sbjct: 382 YGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQR 441

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           I + +   +  + G +VLL+N+Y+A G WD    VR  ++  G +K PGCSSIEL+   H
Sbjct: 442 IGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFH 501

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLA 417
           +FL GD  HP++K++Y+ L+E+   LK  GYVP+   VL DI  E+ K+ +L  HSEKLA
Sbjct: 502 QFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLA 561

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGLI+T PGT+I+IVKNLRVC DCH   K ISK   R+I++RDR R+HHF +G CSC 
Sbjct: 562 IAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCK 621

Query: 478 DYW 480
           DYW
Sbjct: 622 DYW 624



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 137/306 (44%), Gaps = 49/306 (16%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYA--QHGLANEALVLFRRMLAEKVEPNEVTAVA 112
           G ++ A  LFD + + DV  +N MI  +A       N   +    +      PN  T V 
Sbjct: 63  GSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVF 122

Query: 113 VLSACGQ-IGALESGRW-IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV----- 165
           V  ACG  +G LE  +  +H+       ++ N+ V  A+I MY+  G + +AR V     
Sbjct: 123 VFKACGNGLGVLEGEQIRVHAI---KIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSL 179

Query: 166 --------------------------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
                                     FD ++++DVV W ++I GY   G  K+AL LF+E
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 239

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M +    P++ T    L+ACA+   +++G R+ +   D+  I+        ++++ ++ G
Sbjct: 240 MLQTGPPPNEFTLASALAACANLVALDQG-RWIHVYIDKSEIKMNERLLASLLDMYAKCG 298

Query: 260 QVEEAYKLVMD-----MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGT 313
           +++ A K+  D     +K+ P    W  ++G   +HG       + E +  + ++ N  T
Sbjct: 299 EIDFAAKVFHDEYGLKLKVWP----WNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVT 354

Query: 314 YVLLSN 319
           +V L N
Sbjct: 355 FVALLN 360



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGKDALQLFNEMCRIR-LKPSDIT 211
           S  GSL  A  +FD++   DV ++N+MI  +A +     +++++F  M R+    P+  T
Sbjct: 60  SSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYT 119

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F+ +  AC +   V EG +       +  +E  +     M+ + +  G V+EA + V D 
Sbjct: 120 FVFVFKACGNGLGVLEGEQ-IRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARR-VFDW 177

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            ++ D   W  ++G     G I   +++ + +  +++ +  T +
Sbjct: 178 SLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTII 221


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/468 (47%), Positives = 306/468 (65%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  Y +GG +  A +LF  MP +++V+   M+  + + GEVA AR +FD + EKD  
Sbjct: 237 TAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDG 296

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MI  Y + G   EAL LF  M  E V+ N  + ++VLS C  + +L+ GR +H+ +
Sbjct: 297 TWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAEL 356

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             S+    +V V + LI MY KCG L  AR +FDR + KD+V+WNS+I GYA HG  ++A
Sbjct: 357 VKSQ-FDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEA 415

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           LQ+F+EMC   +    +TF+G+LSAC++ G V EG   F +MK +Y +EPK EHY CMV+
Sbjct: 416 LQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVD 475

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG V +A  L+  M +E D+++WG LLGACR H N+ L E  A+ L+     N+G 
Sbjct: 476 LLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGP 535

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLRHPKSKE 372
           Y+LLSNIYA+ G W  VA +R  M+ K V K PGCS IE+  +VH F  G   +HP+   
Sbjct: 536 YILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSS 595

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I  MLE+++G L+  GY P +  VLHD+ E++K  SL  HSE+LAVAFGL+    G  I+
Sbjct: 596 IMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIR 655

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCH+  KLI+K TGR+I++RD NRFHHF +G CSC DYW
Sbjct: 656 VMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 19/278 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           DK +    S+V  Y +      A  LF  MP+R+ VS   +++ Y K   V+ AR  FD 
Sbjct: 44  DKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDT 103

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M E++VV W  M+ GY Q GL +EA  LF +M     E N V+   +L    Q+  ++  
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQM----PEKNVVSWTVMLGGLIQVRRIDEA 159

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +   +        +V   T +I+ Y + G L +AR +FD +  ++V+ W +MI GY  
Sbjct: 160 RGLFDIMPVK-----DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQ 214

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G    A +LF  M     + +++++  +L      G + E    F+ M  +  +     
Sbjct: 215 NGQVDVARKLFEVMP----EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVA---- 266

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
               M+    + G+V +A + V D   E D   W  ++
Sbjct: 267 -CNAMILGFGQNGEVAKA-RQVFDQIREKDDGTWSAMI 302



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 154/329 (46%), Gaps = 22/329 (6%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           S +  YAR G + SA ++F  MP + +VS  +M+  Y +      AR LFD M E++ V 
Sbjct: 21  SQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVS 80

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN +I GY ++ + +EA   F  M     E N V+  A++    Q G +     +   + 
Sbjct: 81  WNGLISGYVKNRMVSEARKAFDTM----PERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                  NV   T ++    +   + +AR +FD +  KDVV   +MI GY   G   +A 
Sbjct: 137 EK-----NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAR 191

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
           +LF+EM R  +    I++  ++S     G V+  R+ F  M ++  +      +  M+  
Sbjct: 192 ELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEKNEVS-----WTAMLMG 242

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
            ++ G++EEA +L   M ++        +LG  + +G +A   ++ + +  +   + GT+
Sbjct: 243 YTQGGRIEEASELFDAMPVKAVVACNAMILGFGQ-NGEVAKARQVFDQIREK---DDGTW 298

Query: 315 VLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
             +  +Y   G       +  LM+ +GVQ
Sbjct: 299 SAMIKVYERKGFEVEALNLFALMQREGVQ 327



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 32/181 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D D++V++ L+ +Y + GD++ A ++F     + +V   +++T YA         
Sbjct: 357 VKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYA--------- 407

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                 QHGL  EAL +F  M +  +  + VT V VLSAC   G
Sbjct: 408 ----------------------QHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTG 445

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ G  I   +++   ++   +    ++++  + G + DA  +  ++  + D ++W ++
Sbjct: 446 KVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGAL 505

Query: 181 I 181
           +
Sbjct: 506 L 506


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/436 (48%), Positives = 293/436 (67%), Gaps = 1/436 (0%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
              +++ Y+K G +  AR +FD M  +D+V WN +I GYAQ+GL   A+    +M  + V 
Sbjct: 672  NALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVV 731

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            PN+ + V++L+AC    ALE G+ +H+ I   R ++ +V+VG ALI+MY+KCGS  +A+ 
Sbjct: 732  PNKFSFVSLLNACSSFSALEEGKRVHAEIVK-RKLQGDVRVGAALISMYAKCGSQGEAQE 790

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            VFD + +K+VV WN+MI  YA HG    AL  FN M +  +KP   TF  +LSAC HAGL
Sbjct: 791  VFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGL 850

Query: 225  VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            V EG + F++M+ EY + P +EHYGC+V LL RA + +EA  L+  M   PD+ +W TLL
Sbjct: 851  VLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 910

Query: 285  GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            GACR+HGNIAL E  A   +  N  N   Y+LLSN+YAA G WD VA++R +M+ +G++K
Sbjct: 911  GACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 970

Query: 345  EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            EPG S IE+ N +HEF+A D  HP++ EIY  L+ ++  ++  GY P TQ VLHD+G+  
Sbjct: 971  EPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAH 1030

Query: 405  KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            ++ SL  HSE+LA+A+GLI T PGT I+I KNLR+C DCH   K ISK  GR+I+ RD N
Sbjct: 1031 QETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 1090

Query: 465  RFHHFVNGTCSCGDYW 480
            RFH F NG CSC DYW
Sbjct: 1091 RFHSFKNGKCSCEDYW 1106



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +++ YA+ G++  AR LF  M ++D++ WN +I GYA+     EA+ L+++M +E V+
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  VT + +LSAC    A   G+ IH  I  S  IK N  +  AL+NMY +CGSL +A+ 
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+    +DV+ WNSMI G+A HG  + A +LF EM    L+P +ITF  +LS C +   
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G++    +  E  ++  V     ++N+  R G +++A  +   ++   D + W  ++
Sbjct: 548 LELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMI 605

Query: 285 GACRLHG 291
           G C   G
Sbjct: 606 GGCADQG 612



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 12/304 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y + G +  A+ +F+  + +DV+ WN MI G+AQHG    A  LF+ M  E++E
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ +T  +VLS C    ALE G+ IH  I  S  ++++V +G ALINMY +CGSL+DAR 
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +  +DV+ W +MI G A  G    A++LF +M     +P   TF  +L  C  +  
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSAC 648

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++EG++     +   Y ++  V +   +++  S++G + +A + V D     D V W  +
Sbjct: 649 LDEGKKVIAYILNSGYELDTGVGN--ALISAYSKSGSMTDA-REVFDKMPSRDIVSWNKI 705

Query: 284 LGACRLHGNIALGEKIAEYLISQN----LANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           +     +G   LG+   E+         + N  ++V L N  ++    +   RV   + +
Sbjct: 706 IAGYAQNG---LGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK 762

Query: 340 KGVQ 343
           + +Q
Sbjct: 763 RKLQ 766



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 153/288 (53%), Gaps = 34/288 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++T   + G+V +A+  F    ++DVV +N +I   AQHG   EA   + RM ++ V 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T +++L+AC    ALE+G+ IHS+I    +   +VQ+G ALI+MY++CG L  AR 
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARCGDLPKARE 386

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-- 222
           +F  +  +D++ WN++I GYA      +A++L+ +M    +KP  +TF+ LLSACA++  
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 223 ------------------------GLVNEGRRFFNTMKDEYAIE----PKVEHYGCMVNL 254
                                    L+N  RR  + M+ +   E      V  +  M+  
Sbjct: 447 YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
            ++ G  E AYKL  +M+   +EPD++ + ++L  C+    + LG++I
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y + G +  AR +F  ++ +DV+ W  MI G A  G   +A+ LF +M  E   
Sbjct: 571 NALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFR 630

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P + T  ++L  C     L+ G+ + +YI NS   +++  VG ALI+ YSK GS+ DAR 
Sbjct: 631 PVKSTFSSILKVCTSSACLDEGKKVIAYILNS-GYELDTGVGNALISAYSKSGSMTDARE 689

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++  +D+V WN +I GYA +G G+ A++   +M    + P+  +F+ LL+AC+    
Sbjct: 690 VFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSA 749

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG+R    +     ++  V     ++++ ++ G   EA + V D  IE + V W  ++
Sbjct: 750 LEEGKRVHAEIVKR-KLQGDVRVGAALISMYAKCGSQGEAQE-VFDNIIEKNVVTWNAMI 807

Query: 285 GACRLHG 291
            A   HG
Sbjct: 808 NAYAQHG 814



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 162/334 (48%), Gaps = 13/334 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   V  A  +F +M  +DV+ WN +I  YAQ G   +A  LF  M      PN
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           ++T +++L+AC     LE+G+ IHS I  +   + + +V  +L++MY KCG L  AR VF
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKA-GYQRDPRVQNSLLSMYGKCGDLPRARQVF 186

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             ++ +DVV +N+M+  YA   + K+ L LF +M    + P  +T+I LL A     +++
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+R      +E  +   +     +V +  R G V+ A K       + D V++  L+ A
Sbjct: 247 EGKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSA-KQAFKGTADRDVVVYNALIAA 304

Query: 287 CRLHG-NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
              HG N+   E+           N  TY+ + N  +     +    + + + E G    
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG---- 360

Query: 346 PGCSSIELSNKVHEFLA--GDLRHPKSKEIYMML 377
              S +++ N +    A  GDL  PK++E++  +
Sbjct: 361 -HSSDVQIGNALISMYARCGDL--PKARELFYTM 391



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 128/249 (51%), Gaps = 3/249 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           QR      ++L+ Y K G++  AR +F  +  +DVV +N M+  YAQ     E L LF +
Sbjct: 160 QRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQ 219

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M +E + P++VT + +L A      L+ G+ IH  +     +  +++VGTAL+ M  +CG
Sbjct: 220 MSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK-LTVEEGLNSDIRVGTALVTMCVRCG 278

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  A+  F    D+DVVV+N++I   A HG   +A + +  M    +  +  T++ +L+
Sbjct: 279 DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+ +  +  G +  ++   E      V+    ++++ +R G + +A +L   M  + D 
Sbjct: 339 ACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDL 396

Query: 278 VLWGTLLGA 286
           + W  ++  
Sbjct: 397 ISWNAIIAG 405



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 8/246 (3%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            E    T VA+L  C +   L   + IH+ +  +  +  ++ +   LINMY KC S+ DA
Sbjct: 23  TETERATYVALLQNCTRKRLLPEAKRIHAQMVEAW-VGPDIFLSNLLINMYVKCRSVLDA 81

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF  +  +DV+ WNS+I  YA  GF K A QLF EM      P+ IT+I +L+AC   
Sbjct: 82  HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141

Query: 223 GLVNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP-DSVLW 280
             +  G++  +  +K  Y  +P+V++   ++++  + G +  A ++     I P D V +
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAG--ISPRDVVSY 197

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
            T+LG       +     +   + S+ ++ +  TY+ L + +      D   R+  L  E
Sbjct: 198 NTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE 257

Query: 340 KGVQKE 345
           +G+  +
Sbjct: 258 EGLNSD 263



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L  D+ V  +L+ +YA+ G    A+++F  + ++++V+   M+  YA         
Sbjct: 761 VKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYA--------- 811

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                 QHGLA++AL  F  M  E ++P+  T  ++LSAC   G
Sbjct: 812 ----------------------QHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +  G  I S +E+   +   ++    L+ +  +    ++A  + +++    D  VW ++
Sbjct: 850 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909

Query: 181 IVGYAMHG 188
           +    +HG
Sbjct: 910 LGACRIHG 917


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/452 (48%), Positives = 299/452 (66%), Gaps = 1/452 (0%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A++LF  MP R++ S  TMLT YA+ G +  A+ +FD M +KD V W  M+  Y+Q G +
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            E L LF  M       N      VLS C  I ALE G  +H  +  +    V   VG A
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 423

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ MY KCG+++DAR  F+ + ++DVV WN+MI GYA HGFGK+AL++F+ M     KP 
Sbjct: 424 LLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           DIT +G+L+AC+H+GLV +G  +F +M  ++ +  K EHY CM++LL RAG++ EA+ L+
Sbjct: 484 DITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLM 543

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            DM  EPDS +WG LLGA R+H N  LG   AE +      N+G YVLLSNIYA+ G W 
Sbjct: 544 KDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWR 603

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
              ++R +M+E+GV+K PG S IE+ NKVH F AGD  HP+ ++IY  LE+++  +K  G
Sbjct: 604 DARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAG 663

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YV  T +VLHD+ E++K++ L+ HSEKLAVA+G+++  PG  I+++KNLRVC DCH  FK
Sbjct: 664 YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            IS   GR I++RD NRFHHF  G+CSCGDYW
Sbjct: 724 YISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 23/284 (8%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +L+  Y + G +  A +LF  MP R +VS   M++ YA++G++  AR LFD    +DV 
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  ++ GYAQ+G+  EA    RR+     E N V+  A+++A  Q   ++  + + + +
Sbjct: 257 TWTAVVSGYAQNGMLEEA----RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                   NV     ++  Y++ G L++A+ VFD +  KD V W +M+  Y+  G  ++ 
Sbjct: 313 PCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEET 367

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMV 252
           LQLF EM R     +   F  +LS CA    +  G +    + +  Y +       GC V
Sbjct: 368 LQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFV 420

Query: 253 N-----LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                 +  + G +E+A     +M+ E D V W T++     HG
Sbjct: 421 GNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 150/338 (44%), Gaps = 71/338 (21%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEV-------- 57
           L+ ++  S   +  + R G V  AE+LFA MP+RS  +   ML  Y+  G +        
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 58  -----------------------AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
                                  A AR LFD+M  +D V +NVMI  +A HGL +    L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVS----L 149

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
            R       E + V+   +L+A  + G +E  R +     NSR  + +     AL++ Y 
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRT-EWDAISWNALMSGYV 204

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           + G + +AR +FDR+  +DVV WN M+ GYA  G   +A +LF+    +R      T+  
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA-APVR---DVFTWTA 260

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAI----------------EPK----------VEHY 248
           ++S  A  G++ E RR F+ M +  A+                E K          V  +
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             M+   ++AG +EEA K V D   + D+V W  +L A
Sbjct: 321 NTMLTGYAQAGMLEEA-KAVFDTMPQKDAVSWAAMLAA 357



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 131/265 (49%), Gaps = 20/265 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D      ++  +A  G V  A   F   P++  VS   ML  Y + G V  AR LF+  
Sbjct: 129 RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 188

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E D + WN ++ GY Q G  +EA  LF RM    V    V+   ++S   + G +   R
Sbjct: 189 TEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEAR 244

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +     ++  ++ +V   TA+++ Y++ G L++AR VFD + +++ V WN+M+  Y   
Sbjct: 245 RLF----DAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 299

Query: 188 GFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
               +A +LFN M CR     +  ++  +L+  A AG++ E +  F+TM  + A+     
Sbjct: 300 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS---- 350

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271
            +  M+   S+ G  EE  +L ++M
Sbjct: 351 -WAAMLAAYSQGGCSEETLQLFIEM 374


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/440 (49%), Positives = 307/440 (69%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+SLT M   YAK G+V  AR  FD ME  +V+ WN MI GYA++G  NEA+ LF+ M++
Sbjct: 308 LISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMIS 364

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + +  + +T  + + AC Q+G+L+  +W+  YI N    + +V V TALI+M++KCGS+ 
Sbjct: 365 KNIRTDSITVRSAILACAQVGSLDLAKWMGDYI-NKTEYRNDVFVNTALIDMFAKCGSVD 423

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDR  DKDVVVW++MIVGY +HG G+DA+ LF  M +  + P+D+TF+GLL+AC 
Sbjct: 424 LAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACN 483

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG   F++MK  Y IE + +HY C+V+LL R+G + EAY  +  M IEP   +W
Sbjct: 484 HSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVW 542

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGAC+++ ++ LGE  AE L S +  N+G YV LSN+YA+   WD VA+VR LM+EK
Sbjct: 543 GALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREK 602

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ G S IE++ K+  F  GD  HP+ KEI+  LE +   LK  G++P  + VLHD+
Sbjct: 603 GLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDL 662

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +++K+ +L  HSE+LA+A+GLIST PGT+++I KNLR C +CH+  KLISK   R+I++
Sbjct: 663 NQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVV 722

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF NG CSC DYW
Sbjct: 723 RDANRFHHFKNGVCSCRDYW 742



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 137/246 (55%), Gaps = 5/246 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V  AR++F+ ++++++V W  MI GY Q+GL  EAL +F +M    V+P+
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +  V+VL A   +  LE G+ IH  +     ++    +  +L  MY+KCG +  AR  F
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVK-MGLEFEPDLLISLTAMYAKCGQVMVARSFF 328

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D++   +V++WN+MI GYA +G+  +A+ LF EM    ++   IT    + ACA  G ++
Sbjct: 329 DQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLD 388

Query: 227 EGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             +   + + K EY  +  V     ++++ ++ G V+ A + V D  ++ D V+W  ++ 
Sbjct: 389 LAKWMGDYINKTEYRNDVFVN--TALIDMFAKCGSVDLA-REVFDRTLDKDVVVWSAMIV 445

Query: 286 ACRLHG 291
              LHG
Sbjct: 446 GYGLHG 451



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 132/255 (51%), Gaps = 5/255 (1%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           GE+  AR +FD+  E  V  WN +I GY+ H    +A+ ++ RM A  V P+  T   VL
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            AC  +  LE G+ +H  I      + +V V   L+ +Y+KCG ++ AR+VF+ ++D+++
Sbjct: 177 KACSGVPVLEVGKRVHGQIFR-LGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI 235

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN- 233
           V W SMI GY  +G   +AL++F +M +  +KP  I  + +L A      + +G+     
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGC 295

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            +K     EP +     +  + ++ GQV  A      M+I P+ ++W  ++     +G  
Sbjct: 296 VVKMGLEFEPDL--LISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMISGYAKNGYT 352

Query: 294 ALGEKIAEYLISQNL 308
                + + +IS+N+
Sbjct: 353 NEAVGLFQEMISKNI 367



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           T  +N     G +  AR VFD   +  V +WN++I GY+ H F  DA+++++ M    + 
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P   T   +L AC+   ++  G+R    +      E  V     +V L ++ G+VE+A +
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIF-RLGFESDVFVQNGLVALYAKCGRVEQA-R 224

Query: 267 LVMDMKIEPDSVLWGTLL 284
           +V +   + + V W +++
Sbjct: 225 IVFEGLDDRNIVSWTSMI 242


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/478 (47%), Positives = 305/478 (63%), Gaps = 32/478 (6%)

Query: 3    KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
            KF LD D +V  +LVD+Y                                K  E+  AR 
Sbjct: 864  KFGLDLDHFVCAALVDMYG-------------------------------KCREIEDARF 892

Query: 63   LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            LFD M E+D+V W VMI GYA+ G ANE+LVLF +M  E V P++V  V V+ AC ++GA
Sbjct: 893  LFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 952

Query: 123  LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            +   R I  YI+  +  +++V +GTA+I+M++KCG ++ AR +FDR+ +K+V+ W++MI 
Sbjct: 953  MHKARTIDDYIQR-KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIA 1011

Query: 183  GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
             Y  HG G+ AL LF  M R  + P+ IT + LL AC+HAGLV EG RFF+ M ++Y++ 
Sbjct: 1012 AYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVR 1071

Query: 243  PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
              V+HY C+V+LL RAG+++EA KL+  M  E D  LWG  LGACR H ++ L EK A  
Sbjct: 1072 XDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATS 1131

Query: 303  LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
            L+     N G Y+LLSNIYA  G W+ VA++R LM ++ ++K PG + IE+ NK H+F  
Sbjct: 1132 LLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSV 1191

Query: 363  GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
            GD  HP+SKEIY ML+ +   L+  GYVP T  VLHD+ E+ K   L  HSEKLA+AFGL
Sbjct: 1192 GDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGL 1251

Query: 423  ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            I+T   T I+I+KNLRVC DCH   KL+S  TGR I++RD NRFHHF  G CSCGDYW
Sbjct: 1252 IATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 275/436 (63%), Gaps = 32/436 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF LD D +V  +LVD+Y                                K  E+  AR 
Sbjct: 188 KFGLDLDHFVCAALVDMYV-------------------------------KCREIEDARF 216

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M+E+D+V W VMI GYA+ G ANE+LVLF +M  E V P++V  V V+ AC ++GA
Sbjct: 217 LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 276

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           +   R I  YI+  +  +++V +GTA+I+MY+KCG ++ AR +FDR+ +K+V+ W++MI 
Sbjct: 277 MHKARIIDDYIQR-KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIA 335

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  HG G+ AL LF  M    + P  IT   LL AC+HAGLV EG RFF++M ++Y++ 
Sbjct: 336 AYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVR 395

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             V+HY C+V+LL RAG+++EA KL+  M IE D  LWG  LGACR H ++ L EK A  
Sbjct: 396 TDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATS 455

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L+     N G YVLLSNIYA  G W+ VA++R LM ++ ++K PG + IE+ NK H+F  
Sbjct: 456 LLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSV 515

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP+SKEIY ML+ ++  L+  GYVP T  VLHD+ E+ K   L  HSEKLA+AFGL
Sbjct: 516 GDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGL 575

Query: 423 ISTQPGTSIKIVKNLR 438
           I+T   T I+I+KNLR
Sbjct: 576 IATPEHTPIRIIKNLR 591



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 130/258 (50%), Gaps = 11/258 (4%)

Query: 39   RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
            ++L+    ++  Y+    +  A  LFD M  +D V W+VM+ G+A+ G        FR +
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827

Query: 99   LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            +     P+  T   V+ AC  +  L+ GR IH +I     + ++  V  AL++MY KC  
Sbjct: 828  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 159  LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
            ++DAR +FD++ ++D+V W  MI GYA  G   ++L LF++M    + P  +  + ++ A
Sbjct: 887  IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946

Query: 219  CAHAGLVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIE 274
            CA  G +++ R       D+Y    K +        M+++ ++ G VE A + + D   E
Sbjct: 947  CAKLGAMHKARTI-----DDYIQRKKFQLDVILGTAMIDMHAKCGCVESA-REIFDRMEE 1000

Query: 275  PDSVLWGTLLGACRLHGN 292
             + + W  ++ A   HG 
Sbjct: 1001 KNVISWSAMIAAYGYHGQ 1018



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 129/257 (50%), Gaps = 11/257 (4%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++V    ++  Y+    +  A  LFD M  +D V W+VM+ G+A+ G        FR ++
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
                P+  T   V+ AC  +  L+ GR IH +I     + ++  V  AL++MY KC  +
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKCREI 211

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           +DAR +FD++ ++D+V W  MI GYA  G   ++L LF +M    + P  +  + ++ AC
Sbjct: 212 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 271

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           A  G +++ R     + D+Y    K +        M+++ ++ G VE A + + D   E 
Sbjct: 272 AKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA-REIFDRMEEK 325

Query: 276 DSVLWGTLLGACRLHGN 292
           + + W  ++ A   HG 
Sbjct: 326 NVISWSAMIAAYGYHGQ 342


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/480 (46%), Positives = 316/480 (65%), Gaps = 2/480 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            K   + D+Y   SL++ YA  G+   A  LF  +P+   VS  +++  YAK G++  A 
Sbjct: 171 TKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIAL 230

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF  M EK+ + W  MI GY Q G+  EAL LF  M    VEP+ V+    LSAC Q+G
Sbjct: 231 TLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 290

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+WIHSY+  +R I+++  +G  LI+MY+KCG + +A  VF  +  K V  W ++I
Sbjct: 291 ALEQGKWIHSYLTKTR-IRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALI 349

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG G++A+  F EM ++ +KP+ ITF  +L+AC++ GLV EG+  F  M+ +Y +
Sbjct: 350 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNL 409

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P +EHYGC+V+LLSRAG ++EA + + +M ++P++V+WG LL ACR+H NI LGE+I E
Sbjct: 410 KPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGE 469

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI+ +  + G YV  +NI+A    WD  A  R LMKE+GV K PGCS+I L    HEFL
Sbjct: 470 ILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 529

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL-EVHSEKLAVAF 420
           AGD  HP+ ++I    + +   L+  GYVP+ + +L D+ +  ++ ++   HSEKLA+ +
Sbjct: 530 AGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITY 589

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI T+PGT+I+I+KNLRVC DCH V KLISK   R I+MRDR RFHHF +G CSCGDYW
Sbjct: 590 GLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 142/317 (44%), Gaps = 43/317 (13%)

Query: 43  SLTTMLTCYAKQGE---VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++T  L+C         +  A+++FD  +  D   WN+MI G++       +L+L++RML
Sbjct: 77  AITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRML 136

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
                 N  T  ++L AC  + ALE    IH+ I      + +V    +LIN Y+  G+ 
Sbjct: 137 CCSAPHNAYTFPSLLKACSNLSALEETTQIHAQI-TKLGYENDVYAVNSLINSYAATGNF 195

Query: 160 KDARLVFDRVNDKDVVVWNS-------------------------------MIVGYAMHG 188
           K A L+FDR+   D V WNS                               MI GY   G
Sbjct: 196 KLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAG 255

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             K+ALQLF+EM    ++P +++    LSACA  G + +G+   + +         V   
Sbjct: 256 MHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSV--L 313

Query: 249 GC-MVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHGNIALGEKIAEYLISQ 306
           GC ++++ ++ G + EA ++  +  I+  SV  W  L+     HG+    E I++++  Q
Sbjct: 314 GCVLIDMYAKCGDMGEALEVFKN--IQRKSVQAWTALISGYAYHGHGR--EAISKFMEMQ 369

Query: 307 NLANSGTYVLLSNIYAA 323
            +      +  + +  A
Sbjct: 370 KMGIKPNVITFTTVLTA 386


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/438 (49%), Positives = 305/438 (69%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GE+  A  LF+ +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 304 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
            PN+VT +++L AC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG ++ A
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  K +  WN+MI G+AMHG    +  LF+ M +I ++P DITF+GLLSAC+H+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F TM  +Y + PK+EHYGCM++LL  +G  +EA +++  M++EPD V+W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++HGN+ LGE  AE LI     N G+YVLLSNIYA+ G W+ VA+ R L+ +KG+
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC DYW
Sbjct: 724 RTRFHHFRDGVCSCNDYW 741



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 187/356 (52%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +Y + G +  A K+F   P R +VS T ++  YA +G +  A+
Sbjct: 161 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQ 220

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD++  KDVV WN MI GYA+ G   EAL LF+ M+   V P+E T V V+SAC Q G
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +H +I++      N+++  ALI++YSKCG L+ A  +F+R+  KDV+ WN++I
Sbjct: 281 SIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLI 339

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399

Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+ + ++ L  
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS 459

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   I+PD + +  LL AC   G + LG  I      +Y ++  L + G  + L
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  ++E +++ WN M  G+A       AL L+  M++  + PN  T   VL +C +  A
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------------- 168
            + G+ IH ++       +++ V T+LI+MY + G L+DA  VFD+              
Sbjct: 150 FKEGQQIHGHVLK-LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208

Query: 169 -----------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN+MI GYA  G  K+AL+LF +M +  ++P + T
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + ++SACA +G +  GR+  +   D++     ++    +++L S+ G++E A  L   +
Sbjct: 269 MVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL 327

Query: 272 KIEPDSVLWGTLLGA 286
             + D + W TL+G 
Sbjct: 328 PYK-DVISWNTLIGG 341



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 34/214 (15%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  + + ++++WN+M  G+A+      AL+L+  M  + L P+  TF  +L +CA +  
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGC---------MVNLLSRAGQVEEAYKLVMDMKIEP 275
             EG++          I   V   GC         ++++  + G++E+A+K V D     
Sbjct: 150 FKEGQQ----------IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK-VFDKSPHR 198

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D V +  L+      G I   +K+ + +  +++ +    +   + YA  GN+     +  
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI---SGYAETGNYKEALELFK 255

Query: 336 LMKEKGVQKE--------PGCS---SIELSNKVH 358
            M +  V+ +          C+   SIEL  +VH
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 289


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/436 (51%), Positives = 297/436 (68%), Gaps = 2/436 (0%)

Query: 46   TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVE 104
            T++  YAK G+   ++ +FD MEEKD + WN MI  YAQ GL+ EAL +F  M+    V 
Sbjct: 1291 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 1350

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             N VT  AVL AC   GAL +G+ IH  +    +++ NV VGT++I+MY KCG ++ A+ 
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIK-MDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
             FDR+ +K+V  W +M+ GY MHG  K+AL +F +M R  +KP+ ITF+ +L+AC+HAGL
Sbjct: 1410 TFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGL 1469

Query: 225  VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            V EG  +FN MK +Y IEP +EHYGCMV+L  RAG + EAY L+  MK++PD V+WG+LL
Sbjct: 1470 VEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 1529

Query: 285  GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            GACR+H N+ LGE  A+ L   +  N G YVLLSN+YA  G W  V R+R LMK + + K
Sbjct: 1530 GACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVK 1589

Query: 345  EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
             PG S +EL  +VH FL GD  HP  + IY  LE++   L+  GYVP    VLHD+ E++
Sbjct: 1590 PPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEE 1649

Query: 405  KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            K+  L VHSEKLAVAFG++++ PGT+I I+KNLRVC DCH V KLISK   R  ++RD  
Sbjct: 1650 KEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSK 1709

Query: 465  RFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 1710 RFHHFKDGVCSCGDYW 1725



 Score =  234 bits (598), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/266 (44%), Positives = 169/266 (63%), Gaps = 3/266 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K+    D++V  +L+D Y + G    A K+F  M  R++VS TT+++     G++  AR
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEAR 211

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  K+VV W  MI+GY ++    EAL LF+RM AE + PNE T V+++ AC ++G
Sbjct: 212 RIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMG 271

Query: 122 ALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            L  GR IH Y I+N   I++ V +GTALI+MYSKCGS+KDA  VF+ +  K +  WNSM
Sbjct: 272 ILTLGRGIHDYAIKNC--IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I    +HG G++AL LF+EM R+ +KP  ITFIG+L AC H   V EG  +F  M   Y 
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYG 389

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYK 266
           I P  EHY CM  L +R+  ++EA+K
Sbjct: 390 IAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 152/301 (50%), Gaps = 51/301 (16%)

Query: 4    FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
            F  + DL+VS++L+D+Y+                               K G++  AR L
Sbjct: 1171 FGFETDLFVSSALIDMYS-------------------------------KCGQLKDARAL 1199

Query: 64   FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-------P-NEVTAVAVLS 115
            FD++  ++VV W  MI GY Q+  A+ AL+LF+  L E+ E       P + V  V+VLS
Sbjct: 1200 FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLS 1259

Query: 116  ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
            AC ++        +H ++   +    ++ VG  L++ Y+KCG    ++ VFD + +KD +
Sbjct: 1260 ACSRVSGKGITEGVHGFVVK-KGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDI 1318

Query: 176  VWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
             WNSMI  YA  G   +AL++F+ M R + ++ + +T   +L ACAHAG +  G+     
Sbjct: 1319 SWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK----C 1374

Query: 235  MKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
            + D+  I+  +E+  C    ++++  + G+VE A K    MK E +   W  ++    +H
Sbjct: 1375 IHDQ-VIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 1432

Query: 291  G 291
            G
Sbjct: 1433 G 1433



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 139/281 (49%), Gaps = 44/281 (15%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+  G +A A +LF  ++      WN++I     +GL+ +AL+L++ M+ + +  +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 107 EVTAVAVLSACGQIGALESGRWIHS-----------YIENS------------------R 137
           + T   V+ AC    +++ G+ +H            +++N+                   
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 138 NIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
            ++V NV   T +I+    CG L++AR +FD +  K+VV W +MI GY  +   ++AL+L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE---HYG-CMV 252
           F  M    + P++ T + L+ AC   G++  GR        +YAI+  +E   + G  ++
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCIEIGVYLGTALI 299

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVL--WGTLLGACRLHG 291
           ++ S+ G +++A ++   M   P   L  W +++ +  +HG
Sbjct: 300 DMYSKCGSIKDAIEVFETM---PRKSLPTWNSMITSLGVHG 337



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 10/204 (4%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T+++  Y K G V  A+  FD M+EK+V  W  M+ GY  HG A EAL +F +M+   V+
Sbjct: 1392 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 1451

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            PN +T V+VL+AC   G +E G    + +++  +I+  ++    +++++ + G L +A  
Sbjct: 1452 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 1511

Query: 165  VFDRVNDK-DVVVWNSMIVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLSAC- 219
            +  R+  K D VVW S++    +H     G+ A Q   E     L P +  +  LLS   
Sbjct: 1512 LIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE-----LDPDNCGYYVLLSNLY 1566

Query: 220  AHAGLVNEGRRFFNTMKDEYAIEP 243
            A AG   +  R    MK+   ++P
Sbjct: 1567 ADAGRWADVERMRMLMKNRQLVKP 1590



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 48/326 (14%)

Query: 63   LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
             +  +++ +V  WN +I   A+ G + EAL  F  +    + P   +    + +C  +  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 123  LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            L SGR  H         + ++ V +ALI+MYSKCG LKDAR +FD +  ++VV W SMI 
Sbjct: 1158 LVSGRMSHQQ-AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 1216

Query: 183  GYAMHGFGKDALQLFNEMCRIRLKPSD--------ITFIGLLSACAHAG--LVNEGRRFF 232
            GY  +    +AL LF +      +  D        +  + +LSAC+      + EG   F
Sbjct: 1217 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 1276

Query: 233  -------------NTMKDEYAI--EPKVEH-------------YGCMVNLLSRAGQVEEA 264
                         NT+ D YA   +P V               +  M+ + +++G   EA
Sbjct: 1277 VVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEA 1336

Query: 265  ----YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLL 317
                + +V  + +  ++V    +L AC   G +  G+ I + +I  +L  +   GT ++ 
Sbjct: 1337 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII- 1395

Query: 318  SNIYAAIGNWDGVARVRTLMKEKGVQ 343
             ++Y   G  +   +    MKEK V+
Sbjct: 1396 -DMYCKCGRVEMAKKTFDRMKEKNVK 1420



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI++YS  G +  A L+F ++ +     WN +I    ++G  + AL L+  M    +   
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             TF  ++ AC +   ++ G+    ++  +Y     V     +++   + G    A K+ 
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLI-KYGFSGDVFVQNNLIDFYFKCGHTRFALKVF 183

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
             M++  + V W T++      G++    +I + + S+N+ +
Sbjct: 184 EKMRVR-NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/461 (47%), Positives = 301/461 (65%), Gaps = 1/461 (0%)

Query: 20  YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           Y +   ++ A +LF  MP R++ S  TM+T Y + G +A AR LFD M ++D V W  +I
Sbjct: 304 YVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAII 363

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GYAQ+G   EAL +F  M  +    N  T    LS C  I ALE G+ +H  +  +   
Sbjct: 364 SGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKA-GF 422

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           +    VG AL+ MY KCGS  +A  VF+ + +KDVV WN+MI GYA HGFG+ AL LF  
Sbjct: 423 ETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFES 482

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M +  +KP +IT +G+LSAC+H+GL++ G  +F +M  +Y ++P  +HY CM++LL RAG
Sbjct: 483 MKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAG 542

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
           ++EEA  L+ +M  +P +  WG LLGA R+HGN  LGEK AE +      NSG YVLLSN
Sbjct: 543 RLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSN 602

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           +YAA G W  V ++R+ M+E GVQK  G S +E+ NK+H F  GD  HP+   IY  LEE
Sbjct: 603 LYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEE 662

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           ++  ++ EGYV  T++VLHD+ E++K++ L+ HSEKLAVAFG+++   G  I+++KNLRV
Sbjct: 663 LDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRV 722

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K ISK  GR I++RD +RFHHF  G CSCGDYW
Sbjct: 723 CQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 158/341 (46%), Gaps = 22/341 (6%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y R      A  LF  MP+R L S   MLT Y +   +  A  LFD M +KDVV
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN M+ GYAQ+G  +EA  +F +M       N ++   +L+A    G L+  R +    
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKM----PHRNSISWNGLLAAYVHNGRLKEARRLFESQ 196

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
            N   I  N  +G      Y K   L DAR +FDR+  +DV+ WN+MI GYA  G    A
Sbjct: 197 SNWELISWNCLMGG-----YVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQA 251

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
            +LFNE   IR      T+  ++S     G+V+E R++F    DE  ++ ++  Y  M+ 
Sbjct: 252 KRLFNE-SPIR---DVFTWTAMVSGYVQNGMVDEARKYF----DEMPVKNEIS-YNAMLA 302

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
              +  ++  A +L   M     S  W T++     +G IA   K+ + +  ++     +
Sbjct: 303 GYVQYKKMVIAGELFEAMPCRNISS-WNTMITGYGQNGGIAQARKLFDMMPQRDCV---S 358

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           +  + + YA  G+++    +   MK  G        S  LS
Sbjct: 359 WAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALS 399



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 166/338 (49%), Gaps = 28/338 (8%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +VKF  D D+      +  + R G   SA ++F +MP+RS VS   M++ Y +  + + A
Sbjct: 38  SVKFK-DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLA 96

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R LFD M E+D+  WNVM+ GY ++    EA  LF  M  + V    V+  A+LS   Q 
Sbjct: 97  RDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDV----VSWNAMLSGYAQN 152

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G ++  R + + + +  +I  N      L+  Y   G LK+AR +F+  ++ +++ WN +
Sbjct: 153 GFVDEAREVFNKMPHRNSISWN-----GLLAAYVHNGRLKEARRLFESQSNWELISWNCL 207

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           + GY       DA QLF+     R+   D I++  ++S  A  G +++ +R FN    E 
Sbjct: 208 MGGYVKRNMLGDARQLFD-----RMPVRDVISWNTMISGYAQVGDLSQAKRLFN----ES 258

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I   V  +  MV+   + G V+EA K   +M ++ + + +  +L     +  + +  ++
Sbjct: 259 PIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-NEISYNAMLAGYVQYKKMVIAGEL 316

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            E +  +N+++  T +         G   G+A+ R L 
Sbjct: 317 FEAMPCRNISSWNTMI------TGYGQNGGIAQARKLF 348



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 93/220 (42%), Gaps = 40/220 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   +   +V  +L+ +Y + G    A  +F  + ++ +VS  TM+  YA+ G      
Sbjct: 418 VKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHG------ 471

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                       +ALVLF  M    V+P+E+T V VLSAC   G
Sbjct: 472 -------------------------FGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            ++ G      ++   N+K   +  T +I++  + G L++A  L+ +   D     W ++
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566

Query: 181 IVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +HG    G+ A ++       +++P +     LLS
Sbjct: 567 LGASRIHGNTELGEKAAEMV-----FKMEPQNSGMYVLLS 601


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/440 (49%), Positives = 307/440 (69%), Gaps = 3/440 (0%)

Query: 43  SLTTMLTCYAKQGEVA--AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +L  M  C  + G     +A+ +FD+   KD V W+ MI GYA+ G +  A+ LFR M  
Sbjct: 267 TLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQV 326

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+E+T V+VLSAC  +GALE G+W+ SYIE  +NI  +V++  ALI+M++KCG + 
Sbjct: 327 TGVCPDEITMVSVLSACADLGALELGKWLESYIER-KNIMRSVELCNALIDMFAKCGDVD 385

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A  VF  +  + +V W SMIVG AMHG G +A+ +F+EM    + P D+ FIG+LSAC+
Sbjct: 386 RAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACS 445

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV++G  +FNTM++ ++I PK+EHYGCMV++LSRAG+V EA + V  M +EP+ V+W
Sbjct: 446 HSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIW 505

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            +++ AC   G + LGE +A+ LI +  ++   YVLLSNIYA +  W+   +VR +M  K
Sbjct: 506 RSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVK 565

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G++K PG + IE++N+++EF+AGD  H + KEIY M+EE+   +K  GYVP T  VL DI
Sbjct: 566 GMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDI 625

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+++L  HSEKLA+AF L+ST PGT I+IVKNLRVC DCH+  K ISK   R+I++
Sbjct: 626 DEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVV 685

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDRNRFHHF NG CSCGD+W
Sbjct: 686 RDRNRFHHFKNGLCSCGDFW 705



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 14/244 (5%)

Query: 59  AARVLFDDME-----EKDVVCWNVMIDGYAQHGLAN-EALVLFRRMLAEKVEPNEVTAVA 112
           A+ VLF + +       D   +N +I  +AQ   +   AL  +  M    V PN+ T   
Sbjct: 173 ASSVLFPNDQTTPPPSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPF 232

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-----GSLKDARLVFD 167
           VL AC  +  LE G  +H+ +      + +  V   L++MY  C          A+ VFD
Sbjct: 233 VLKACAGMMRLELGGAVHASMVKF-GFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFD 291

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
               KD V W++MI GYA  G    A+ LF EM    + P +IT + +LSACA  G +  
Sbjct: 292 ESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALEL 351

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
           G ++  +  +   I   VE    ++++ ++ G V+ A K+  +MK+    V W +++   
Sbjct: 352 G-KWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVSWTSMIVGL 409

Query: 288 RLHG 291
            +HG
Sbjct: 410 AMHG 413



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 5/181 (2%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           RS+     ++  +AK G+V  A  +F +M+ + +V W  MI G A HG   EA+++F  M
Sbjct: 366 RSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEM 425

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           + + V+P++V  + VLSAC   G ++ G +  + +EN  +I   ++    +++M S+ G 
Sbjct: 426 MEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGR 485

Query: 159 LKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           + +A L F R    + + V+W S++      G  K    +  E+  IR +PS  +   LL
Sbjct: 486 VNEA-LEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKEL--IRREPSHESNYVLL 542

Query: 217 S 217
           S
Sbjct: 543 S 543


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/436 (51%), Positives = 297/436 (68%), Gaps = 2/436 (0%)

Query: 46   TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVE 104
            T++  YAK G+   ++ +FD MEEKD + WN MI  YAQ GL+ EAL +F  M+    V 
Sbjct: 2164 TLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVR 2223

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             N VT  AVL AC   GAL +G+ IH  +    +++ NV VGT++I+MY KCG ++ A+ 
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAGKCIHDQV-IKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
             FDR+ +K+V  W +M+ GY MHG  K+AL +F +M R  +KP+ ITF+ +L+AC+HAGL
Sbjct: 2283 TFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGL 2342

Query: 225  VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            V EG  +FN MK +Y IEP +EHYGCMV+L  RAG + EAY L+  MK++PD V+WG+LL
Sbjct: 2343 VEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 2402

Query: 285  GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            GACR+H N+ LGE  A+ L   +  N G YVLLSN+YA  G W  V R+R LMK + + K
Sbjct: 2403 GACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVK 2462

Query: 345  EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
             PG S +EL  +VH FL GD  HP  + IY  LE++   L+  GYVP    VLHD+ E++
Sbjct: 2463 PPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEE 2522

Query: 405  KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            K+  L VHSEKLAVAFG++++ PGT+I I+KNLRVC DCH V KLISK   R  ++RD  
Sbjct: 2523 KEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSK 2582

Query: 465  RFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 2583 RFHHFKDGVCSCGDYW 2598



 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/266 (44%), Positives = 169/266 (63%), Gaps = 3/266 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K+    D++V  +L+D Y + G    A K+F  M  R++VS TT+++     G++  AR
Sbjct: 152 IKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEAR 211

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  K+VV W  MI+GY ++    EAL LF+RM AE + PNE T V+++ AC ++G
Sbjct: 212 RIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMG 271

Query: 122 ALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            L  GR IH Y I+N   I++ V +GTALI+MYSKCGS+KDA  VF+ +  K +  WNSM
Sbjct: 272 ILTLGRGIHDYAIKNC--IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I    +HG G++AL LF+EM R+ +KP  ITFIG+L AC H   V EG  +F  M   Y 
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYG 389

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYK 266
           I P  EHY CM  L +R+  ++EA+K
Sbjct: 390 IAPIPEHYECMTELYARSNNLDEAFK 415



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 149/278 (53%), Gaps = 20/278 (7%)

Query: 27   LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
            +S ++ F    +  L   + ++  Y+K G++  AR LFD++  ++VV W  MI GY Q+ 
Sbjct: 2036 MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNE 2095

Query: 87   LANEALVLFRRMLAEKVE-------P-NEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
             A+ AL+LF+  L E+ E       P + V  V+VLSAC ++        +H ++   + 
Sbjct: 2096 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVV-KKG 2154

Query: 139  IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
               ++ VG  L++ Y+KCG    ++ VFD + +KD + WNSMI  YA  G   +AL++F+
Sbjct: 2155 FDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH 2214

Query: 199  EMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC----MVN 253
             M R + ++ + +T   +L ACAHAG +  G+     + D+  I+  +E+  C    +++
Sbjct: 2215 GMVRHVGVRYNAVTLSAVLLACAHAGALRAGK----CIHDQ-VIKMDLEYNVCVGTSIID 2269

Query: 254  LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  + G+VE A K    MK E +   W  ++    +HG
Sbjct: 2270 MYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMHG 2306



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 139/281 (49%), Gaps = 44/281 (15%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+  G +A A +LF  ++      WN++I     +GL+ +AL+L++ M+ + +  +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 107 EVTAVAVLSACGQIGALESGRWIHS-----------YIENS------------------R 137
           + T   V+ AC    +++ G+ +H            +++N+                   
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 138 NIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
            ++V NV   T +I+    CG L++AR +FD +  K+VV W +MI GY  +   ++AL+L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE---HYG-CMV 252
           F  M    + P++ T + L+ AC   G++  GR        +YAI+  +E   + G  ++
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCIEIGVYLGTALI 299

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVL--WGTLLGACRLHG 291
           ++ S+ G +++A ++   M   P   L  W +++ +  +HG
Sbjct: 300 DMYSKCGSIKDAIEVFETM---PRKSLPTWNSMITSLGVHG 337



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 10/204 (4%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T+++  Y K G V  A+  FD M+EK+V  W  M+ GY  HG A EAL +F +M+   V+
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            PN +T V+VL+AC   G +E G    + +++  +I+  ++    +++++ + G L +A  
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384

Query: 165  VFDRVNDK-DVVVWNSMIVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLSAC- 219
            +  R+  K D VVW S++    +H     G+ A Q   E     L P +  +  LLS   
Sbjct: 2385 LIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFE-----LDPDNCGYYVLLSNLY 2439

Query: 220  AHAGLVNEGRRFFNTMKDEYAIEP 243
            A AG   +  R    MK+   ++P
Sbjct: 2440 ADAGRWADVERMRMLMKNRQLVKP 2463



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 48/326 (14%)

Query: 63   LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
             +  +++ +V  WN +I   A+ G + EAL  F  +    + P   +    + +C  +  
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 123  LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            L SGR  H         + ++ V +ALI+MYSKCG LKDAR +FD +  ++VV W SMI 
Sbjct: 2031 LVSGRMSHQQ-AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 2089

Query: 183  GYAMHGFGKDALQLFNEMCRIRLKPSD--------ITFIGLLSACAHAG--LVNEGRRFF 232
            GY  +    +AL LF +      +  D        +  + +LSAC+      + EG   F
Sbjct: 2090 GYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGF 2149

Query: 233  -------------NTMKDEYAI--EPKVEH-------------YGCMVNLLSRAGQVEEA 264
                         NT+ D YA   +P V               +  M+ + +++G   EA
Sbjct: 2150 VVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEA 2209

Query: 265  ----YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLL 317
                + +V  + +  ++V    +L AC   G +  G+ I + +I  +L  +   GT ++ 
Sbjct: 2210 LEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII- 2268

Query: 318  SNIYAAIGNWDGVARVRTLMKEKGVQ 343
             ++Y   G  +   +    MKEK V+
Sbjct: 2269 -DMYCKCGRVEMAKKTFDRMKEKNVK 2293



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 6/201 (2%)

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
           A+ +L  C     L   R IH+ I  S  +  +  +   LI++YS  G +  A L+F ++
Sbjct: 30  ALFLLQNCKNFKHL---RQIHAKIIRS-GLSNDQLLTRKLIHLYSTHGRIAYAILLFYQI 85

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
            +     WN +I    ++G  + AL L+  M    +     TF  ++ AC +   ++ G+
Sbjct: 86  QNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGK 145

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
               ++  +Y     V     +++   + G    A K+   M++  + V W T++     
Sbjct: 146 VVHGSLI-KYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLIS 203

Query: 290 HGNIALGEKIAEYLISQNLAN 310
            G++    +I + + S+N+ +
Sbjct: 204 CGDLQEARRIFDEIPSKNVVS 224


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/478 (47%), Positives = 305/478 (63%), Gaps = 32/478 (6%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF LD D +V  +LVD+Y                                K  E+  AR 
Sbjct: 260 KFGLDLDHFVCAALVDMYG-------------------------------KCREIEDARF 288

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M E+D+V W VMI GYA+ G ANE+LVLF +M  E V P++V  V V+ AC ++GA
Sbjct: 289 LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 348

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           +   R I  YI+  +  +++V +GTA+I+M++KCG ++ AR +FDR+ +K+V+ W++MI 
Sbjct: 349 MHKARTIDDYIQR-KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIA 407

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  HG G+ AL LF  M R  + P+ IT + LL AC+HAGLV EG RFF+ M ++Y++ 
Sbjct: 408 AYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVR 467

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             V+HY C+V+LL RAG+++EA KL+  M +E D  LWG  LGACR H ++ L EK A  
Sbjct: 468 ADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATS 527

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L+     N G Y+LLSNIYA  G W+ VA+ R LM ++ ++K PG + IE+ NK H+F  
Sbjct: 528 LLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSV 587

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP+SKEIY ML+ +   L+  GYVP T  VLHD+ E+ K   L  HSEKLA+AFGL
Sbjct: 588 GDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGL 647

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I+T   T I+I+KNLRVC DCH   KL+S  TGR I++RD NRFHHF  G CSCGDYW
Sbjct: 648 IATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 157/292 (53%), Gaps = 38/292 (13%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF LD D +V  +LVD+Y                                K  E+  AR 
Sbjct: 58  KFGLDLDHFVCAALVDMYV-------------------------------KCREIEDARF 86

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M+E+D+V W VMI GYA+ G ANE+LVLF +M  E V P++V  V V+ AC ++GA
Sbjct: 87  LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGA 146

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           +   R I  YI+  +  +++V +GTA+I+MY+KCG ++ AR +FDR+ +K+V+ W++MI 
Sbjct: 147 MHKARIIDDYIQR-KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIA 205

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  HG G+ AL LF  M    + P  IT   LL AC+    +  GR   + +   Y   
Sbjct: 206 AYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIV---YKFG 262

Query: 243 PKVEHYGC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
             ++H+ C  +V++  +  ++E+A + + D   E D V W  ++G     GN
Sbjct: 263 LDLDHFVCAALVDMYGKCREIEDA-RFLFDKMPERDLVTWTVMIGGYAECGN 313



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 144/255 (56%), Gaps = 3/255 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  ++  T M+  YAK G V +AR +FD MEEK+V+ W+ MI  Y  HG   +AL LFR 
Sbjct: 163 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRM 222

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML+  + P+++T  ++L AC  +  L+ GR IH +I     + ++  V  AL++MY KC 
Sbjct: 223 MLSSGMLPDKITLASLLYACSDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYGKCR 281

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++DAR +FD++ ++D+V W  MI GYA  G   ++L LF++M    + P  +  + ++ 
Sbjct: 282 EIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVF 341

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           ACA  G +++ R   + ++ +   +  V     M+++ ++ G VE A + + D   E + 
Sbjct: 342 ACAKLGAMHKARTIDDYIQRK-KFQLDVILGTAMIDMHAKCGCVESA-REIFDRMEEKNV 399

Query: 278 VLWGTLLGACRLHGN 292
           + W  ++ A   HG 
Sbjct: 400 ISWSAMIAAYGYHGQ 414



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 11/219 (5%)

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           M+ G+A+ G        FR ++     P+  T   V+ AC  +  L+ GR IH +I    
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKF 59

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
            + ++  V  AL++MY KC  ++DAR +FD++ ++D+V W  MI GYA  G   ++L LF
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY----GCMVN 253
            +M    + P  +  + ++ ACA  G +++ R     + D+Y    K +        M++
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMID 174

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + ++ G VE A + + D   E + + W  ++ A   HG 
Sbjct: 175 MYAKCGCVESA-REIFDRMEEKNVISWSAMIAAYGYHGQ 212


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/437 (49%), Positives = 301/437 (68%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
            T++  YAK GE+  +R +FD M E+DV+ WN +I  YAQ+G++ E++ +F RM+ + ++
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 359

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             N VT  AVL AC   G+   G+ IH  +     ++ NV VGT++I+MY KCG ++ AR
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIK-MGLESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             FDR+ +K+V  W++M+ GY MHG  K+AL++F EM    +KP+ ITF+ +L+AC+HAG
Sbjct: 419 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 478

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L+ EG  +F  M  E+ +EP VEHYGCMV+LL RAG ++EA+ L+  MK+ PD V+WG L
Sbjct: 479 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 538

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LGE  A  L   +  N G YVLLSNIYA  G W+ V R+R LMK  G+ 
Sbjct: 539 LGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 598

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S +++  +VH FL GD  HP+ ++IY  LE+++  L+  GYVP    VLHD+G +
Sbjct: 599 KPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHE 658

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  L VHSEKLAVAFG+++T PGT+I I+KNLRVC DCH   K ISK   R+I++RD 
Sbjct: 659 EKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDS 718

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 719 KRFHHFRDGLCSCGDYW 735



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 162/332 (48%), Gaps = 51/332 (15%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  + DL+VS++LVD+Y+                               K GE+  AR L
Sbjct: 181 FGFEPDLFVSSALVDMYS-------------------------------KCGELRDARTL 209

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK----------VEPNEVTAVAV 113
           FD++  +++V W  MI GY Q+  A+ AL+LF+  L E+          V+P  +  V+V
Sbjct: 210 FDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDP--IAMVSV 267

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           LSAC ++        +H ++   R  + ++ V   L++ Y+KCG L  +R VFD + ++D
Sbjct: 268 LSACSRVSEKSITEGVHGFLIK-RGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD 326

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           V+ WNS+I  YA +G   +++++F+ M +   +  + +T   +L ACAH+G    G+   
Sbjct: 327 VISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH 386

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + +  +  +E  V     ++++  + G+VE A K    M+ E +   W  ++    +HG+
Sbjct: 387 DQVI-KMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGH 444

Query: 293 IALGEKIAEYLISQNLAN-SGTYVLLSNIYAA 323
               ++  E     N+A     Y+   ++ AA
Sbjct: 445 ---AKEALEVFYEMNMAGVKPNYITFVSVLAA 473



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 147/324 (45%), Gaps = 52/324 (16%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +++ +V  WN +I   A+ G + EAL  F  M    ++PN  T    + +C  +  L SG
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R  H         + ++ V +AL++MYSKCG L+DAR +FD ++ +++V W SMI GY  
Sbjct: 172 RQAHQQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230

Query: 187 HGFGKDALQLFNEMC----------RIRLKPSDITFIGLLSACAHAG--LVNEGRRFF-- 232
           +     AL LF E             + + P  I  + +LSAC+      + EG   F  
Sbjct: 231 NDDAHRALLLFKEFLVEESGSEGDGEVCVDP--IAMVSVLSACSRVSEKSITEGVHGFLI 288

Query: 233 -----------NTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEA-- 264
                      NT+ D YA                E  V  +  ++ + ++ G   E+  
Sbjct: 289 KRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESME 348

Query: 265 --YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSN 319
             +++V D +I  ++V    +L AC   G+  LG+ I + +I   L ++   GT ++  +
Sbjct: 349 IFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII--D 406

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQ 343
           +Y   G  +   +    M+EK V+
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVK 430



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 49/252 (19%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+ +++V TS++D+Y + G V  A K F  M ++++ S + M+            
Sbjct: 389 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA----------- 437

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GY  HG A EAL +F  M    V+PN +T V+VL+AC   
Sbjct: 438 --------------------GYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHA 477

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVV 176
           G LE G      + +  +++  V+    ++++  + G LK+A   FD +       D VV
Sbjct: 478 GLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA---FDLIKGMKLRPDFVV 534

Query: 177 WNSMIVGYAMH---GFGK-DALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGRRF 231
           W +++    MH     G+  A +LF       L P +  +  LLS   A AG   +  R 
Sbjct: 535 WGALLGACRMHKNVDLGEISARKLFE------LDPKNCGYYVLLSNIYADAGRWEDVERM 588

Query: 232 FNTMKDEYAIEP 243
              MK+   ++P
Sbjct: 589 RILMKNSGLVKP 600


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/452 (48%), Positives = 299/452 (66%), Gaps = 1/452 (0%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A++LF  MP R++ S  TMLT YA+ G +  A+ +FD M +KD V W  M+  Y+Q G +
Sbjct: 180 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 239

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            E L LF  M       N      VLS C  I ALE G  +H  +  +    V   VG A
Sbjct: 240 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 298

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ MY KCG+++DAR  F+ + ++DVV WN+MI GYA HGFGK+AL++F+ M     KP 
Sbjct: 299 LLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 358

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           DIT +G+L+AC+H+GLV +G  +F +M  ++ +  K EHY CM++LL RAG++ EA+ L+
Sbjct: 359 DITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLM 418

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            DM  EPDS +WG LLGA R+H N  LG   AE +      N+G YVLLSNIYA+ G W 
Sbjct: 419 KDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWR 478

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
              ++R +M+E+GV+K PG S IE+ NKVH F AGD  HP+ ++IY  LE+++  +K  G
Sbjct: 479 DARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAG 538

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YV  T +VLHD+ E++K++ L+ HSEKLAVA+G+++  PG  I+++KNLRVC DCH  FK
Sbjct: 539 YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 598

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            IS   GR I++RD NRFHHF  G+CSCGDYW
Sbjct: 599 YISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 23/289 (7%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+    +L+  Y + G +  A +LF  MP R +VS   M++ YA++G++  AR LFD   
Sbjct: 67  DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 126

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +DV  W  ++ GYAQ+G+  EA    RR+     E N V+  A+++A  Q   ++  + 
Sbjct: 127 VRDVFTWTAVVSGYAQNGMLEEA----RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 182

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           + + +        NV     ++  Y++ G L++A+ VFD +  KD V W +M+  Y+  G
Sbjct: 183 LFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 237

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEH 247
             ++ LQLF EM R     +   F  +LS CA    +  G +    + +  Y +      
Sbjct: 238 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 291

Query: 248 YGCMVN-----LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            GC V      +  + G +E+A     +M+ E D V W T++     HG
Sbjct: 292 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 338



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 20/265 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D      ++  +A  G V  A   F   P++  VS   ML  Y + G V  AR LF+  
Sbjct: 4   RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E DV+ WN ++ GY Q G  +EA  LF RM    V    V+   ++S   + G +   R
Sbjct: 64  TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEAR 119

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +     ++  ++ +V   TA+++ Y++ G L++AR VFD + +++ V WN+M+  Y   
Sbjct: 120 RLF----DAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 174

Query: 188 GFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
               +A +LFN M CR     +  ++  +L+  A AG++ E +  F+TM  + A+     
Sbjct: 175 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS---- 225

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271
            +  M+   S+ G  EE  +L ++M
Sbjct: 226 -WAAMLAAYSQGGCSEETLQLFIEM 249



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 19/251 (7%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
           MP R  V+   M++ +A  G V+ AR  FD   EKD V WN M+  Y ++G   EA  LF
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
                 + E + ++  A++S   Q G +   R +   +     +  N+     +++ Y++
Sbjct: 61  N----SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNI-----MVSGYAR 111

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
            G + +AR +FD    +DV  W +++ GYA +G  ++A ++F+ M     + + +++  +
Sbjct: 112 RGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAM 167

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           ++A     +++E +  FN M         V  +  M+   ++AG +EEA K V D   + 
Sbjct: 168 VAAYIQRRMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEA-KAVFDTMPQK 221

Query: 276 DSVLWGTLLGA 286
           D+V W  +L A
Sbjct: 222 DAVSWAAMLAA 232


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/436 (48%), Positives = 299/436 (68%), Gaps = 1/436 (0%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
              ++  YAK G++ AAR++FD M  +D+V W  MI GYA +G  +E L  F  M +  V 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            PN V+ ++VL ACG +GAL  G W HSY+  +   + ++ V TA+++MYSKCGSL  AR 
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQT-GFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            +FD    KD+V W++MI  Y +HG G+ A+ LF++M +  ++PS +TF  +LSAC+H+GL
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 225  VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            + EG+ +F  M +E+ I  K+ +Y CMV+LL RAGQ+ EA  L+ +M +EPD+ +WG+LL
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095

Query: 285  GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            GACR+H N+ L EKIA++L   +  ++G +VLLSNIYAA   W+ V +VR +M  +G  K
Sbjct: 1096 GACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANK 1155

Query: 345  EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
              G S +E  N+VH+F  GD  HP+ +++Y  LEE+   +K  GYVP T  VLHDI E+ 
Sbjct: 1156 IQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEA 1215

Query: 405  KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            K+ +L  HSE+LA+AFGLI+T PGT+++I KNLR+C DCH   KLISK   R I++RD +
Sbjct: 1216 KEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMH 1275

Query: 465  RFHHFVNGTCSCGDYW 480
            RFH F +G CSCGDYW
Sbjct: 1276 RFHRFEDGVCSCGDYW 1291



 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/358 (41%), Positives = 229/358 (63%), Gaps = 2/358 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K      A  LF  + +KDVV W  ++ GYAQ+G+A +++ +FR ML++ ++
Sbjct: 346 TALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQ 405

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ V  V +L+A  ++G  +    +H Y+  S     NV VG +LI +YSKCGSL DA  
Sbjct: 406 PDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVK 464

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAG 223
           +F  +  +DVV+W+SMI  Y +HG G +AL++F++M +   ++P+++TF+ +LSAC+HAG
Sbjct: 465 LFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAG 524

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG + F+ M  +Y + P  EH+G MV+LL R GQ+ +A  ++  M I     +WG L
Sbjct: 525 LVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGAL 584

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H NI +GE  A+ L   + +++G Y+LLSNIYA  G WD VA +RT +KE+G++
Sbjct: 585 LGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLK 644

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           K  G S +E+   VH FLA D  HP S++IY +L ++   +  E Y+P    +LHD G
Sbjct: 645 KMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDTG 702



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 142/287 (49%), Gaps = 19/287 (6%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++L  YAK G    A  LF  M EKDV+ W+ MI  YA +  ANEAL LF  M+ ++ 
Sbjct: 244 VNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRF 303

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EPN VT V+ L AC     LE G+ IH  I   +  +++  V TALI+MY KC    +A 
Sbjct: 304 EPNSVTVVSALQACAVSRNLEEGKKIHK-IAVWKGFELDFSVSTALIDMYMKCSCPDEAV 362

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F R+  KDVV W +++ GYA +G    ++ +F  M    ++P  +  + +L+A +  G
Sbjct: 363 DLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELG 422

Query: 224 LVNEG--------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           +  +         R  FN+          V     ++ L S+ G + +A KL   M +  
Sbjct: 423 IFQQALCLHGYVVRSGFNS---------NVFVGASLIELYSKCGSLGDAVKLFKGMIVR- 472

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
           D V+W +++ A  +HG      +I + ++  +         LS + A
Sbjct: 473 DVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSA 519



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 138/262 (52%), Gaps = 3/262 (1%)

Query: 31   KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
            K+FA   Q     LT     Y     + AA ++F+D+       WNVMI G+A  G    
Sbjct: 742  KIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLS 801

Query: 91   ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
            +L L+ +M+ + ++P++      L +C  +  L+ G+ IH ++        ++ V  AL+
Sbjct: 802  SLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCC-GCSNDLFVDAALV 860

Query: 151  NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
            +MY+KCG ++ ARLVFD++  +D+V W SMI GYA +G+  + L  F+ M    + P+ +
Sbjct: 861  DMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRV 920

Query: 211  TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
            + + +L AC + G + +G  +F++   +   E  +     ++++ S+ G ++ A + + D
Sbjct: 921  SILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA-RCLFD 978

Query: 271  MKIEPDSVLWGTLLGACRLHGN 292
                 D V W  ++ +  +HG+
Sbjct: 979  ETAGKDLVCWSAMIASYGIHGH 1000



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 146/325 (44%), Gaps = 43/325 (13%)

Query: 16  LVDLYARGGDVLSAEKL----FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           LVDL+    +  S  +L    F T         T + + YAK   + AAR +FD+    +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGRWIH 130
           V  WN  +  Y +     E L LF  M+    E P+  T    L AC  +  LE G+ IH
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            + + +  I  ++ VG+AL+ +YSKCG + +A  VF+     D V+W SM+ GY  +   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 191 KDALQLFNEMCR---IRLKPSDITFIGLLSACAHAGLVNEG--------RRFF------- 232
           ++AL LF++M     + L P  +T + ++SACA    V  G        RR F       
Sbjct: 187 EEALALFSQMVMMDCVVLDP--VTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLV 244

Query: 233 NTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIE 274
           N++ + YA                E  V  +  M+   +      EA  L  +M   + E
Sbjct: 245 NSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFE 304

Query: 275 PDSVLWGTLLGACRLHGNIALGEKI 299
           P+SV   + L AC +  N+  G+KI
Sbjct: 305 PNSVTVVSALQACAVSRNLEEGKKI 329



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 32/170 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+   + +++V  SL++LY++ G +  A KLF  M  R +V  ++M+  Y         
Sbjct: 434 VVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGI------- 486

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQ 119
                                   HG   EAL +F +M+    V PN VT +++LSAC  
Sbjct: 487 ------------------------HGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSH 522

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
            G +E G  I   + +   ++ + +    ++++  + G L  A  + +R+
Sbjct: 523 AGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRM 572


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/487 (47%), Positives = 305/487 (62%), Gaps = 13/487 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTML--TCYAKQGEVAAAR-- 61
           LD DL V  SLVD YA+   V  A + F  + Q  LVS   ML  T + + G+  AA   
Sbjct: 244 LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEF 303

Query: 62  --------VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
                    +F ++  +DVV WN +I   AQ G +  AL L R M    VE N VT V+ 
Sbjct: 304 FQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSA 363

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC ++ AL  G+ IH +I        N  +  +LI+MY +CGS++ +R +FD +  +D
Sbjct: 364 LPACSKLAALRQGKEIHQFIIRCGLDTCNF-ILNSLIDMYGRCGSIQKSRRIFDLMPQRD 422

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           +V WN MI  Y MHGFG DA+ LF +   + LKP+ ITF  LLSAC+H+GL+ EG ++F 
Sbjct: 423 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 482

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            MK EYA++P VE Y CMV+LLSRAGQ  E  + +  M  EP++ +WG+LLGACR+H N 
Sbjct: 483 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 542

Query: 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353
            L E  A YL      +SG YVL++NIY+A G W+  A++R LMKE+GV K PGCS IE+
Sbjct: 543 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 602

Query: 354 SNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHS 413
             K+H F+ GD  HP  ++I   +E +   +K  GYVP T  VL D+ E +K+ SL  HS
Sbjct: 603 KRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHS 662

Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           EK+A+AFGLIST  GT ++I+KNLRVC DCH+  K ISK   R I+MRD  RFHHFV+G 
Sbjct: 663 EKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGV 722

Query: 474 CSCGDYW 480
           CSCGDYW
Sbjct: 723 CSCGDYW 729



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 106/186 (56%), Gaps = 8/186 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L  + K G +  AR  F+++E KDV  WN+M+ GY   G   +AL +FR+M+ E V+P
Sbjct: 151 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKP 210

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N +T  + +SAC  +  L  GR IH Y      +  ++ VG +L++ Y+KC S++ AR  
Sbjct: 211 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 270

Query: 166 FDRVNDKDVVVWNSM--IVGYAMHGFGKDALQLFNEM---CRI--RLKPSD-ITFIGLLS 217
           F  +   D+V WN+M  + G+  +G GK AL+ F  M   C +   L   D + +  ++S
Sbjct: 271 FGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIIS 330

Query: 218 ACAHAG 223
           ACA +G
Sbjct: 331 ACAQSG 336



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 2/241 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  Y + G V  AR +FD M E++V  W  +++ Y   G   E + LF  M+ E V 
Sbjct: 49  SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 108

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+      V  AC ++     G+ ++ Y+  S   + N  V  ++++M+ KCG +  AR 
Sbjct: 109 PDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDIARR 167

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F+ +  KDV +WN M+ GY   G  K AL +F +M    +KP+ IT    +SAC +  L
Sbjct: 168 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSL 227

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  GR           ++  +     +V+  ++   VE A +    +K + D V W  +L
Sbjct: 228 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIK-QTDLVSWNAML 286

Query: 285 G 285
            
Sbjct: 287 A 287



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 110/285 (38%), Gaps = 75/285 (26%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  LD   ++  SL+D+Y R G +  + ++F  MPQR LVS                  
Sbjct: 384 IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS------------------ 425

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        WNVMI  Y  HG   +A+ LF++     ++PN +T   +LSAC   G
Sbjct: 426 -------------WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSG 472

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +E G      ++    +   V+    ++++ S+ G   +     +++  + +  VW S+
Sbjct: 473 LIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSL 532

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +                   CRI   P                L     R+       + 
Sbjct: 533 LGA-----------------CRIHCNPD---------------LAEYAARYL------FE 554

Query: 241 IEPKVE-HYGCMVNLLSRAGQVEEAYKLVMDMK----IEPDSVLW 280
           +EP+   +Y  M N+ S AG+ E+A K+   MK     +P    W
Sbjct: 555 LEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSW 599



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 90/184 (48%), Gaps = 5/184 (2%)

Query: 105 PNEVTAV--AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           P+E   +  ++L  C ++  L  G  +H+ +     + V   +G+ L+ +Y + G ++DA
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHAQLV-VNGVDVCEFLGSRLLEVYCQTGCVEDA 64

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R +FD++++++V  W +++  Y   G  ++ ++LF  M    ++P    F  +  AC+  
Sbjct: 65  RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 124

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
                G+  ++ M      E      G ++++  + G+++ A +   +++ + D  +W  
Sbjct: 125 KNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNI 182

Query: 283 LLGA 286
           ++  
Sbjct: 183 MVSG 186


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/495 (46%), Positives = 332/495 (67%), Gaps = 16/495 (3%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSL-------------TT 46
            +K+    D +V ++LV +Y   G +  A  LF   + +R +V +               
Sbjct: 147 ALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNV 206

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEP 105
           M+  Y + G+  AAR+LFD M ++ VV WN MI GY+Q+G   +A+ +FR M   E + P
Sbjct: 207 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRP 266

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT V+VL A  ++G+LE G W+H Y E+S  I+++  +G+ALI+MYSKCG ++ A +V
Sbjct: 267 NYVTLVSVLPAVSRLGSLELGEWLHLYAEDS-GIRIDDVLGSALIDMYSKCGIIEKAIMV 325

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+R+  ++V+ W++MI G+A+HG   DA+  F +M +  ++PSD+ +I LL+AC+HAGLV
Sbjct: 326 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLV 385

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGRR+F+ M     +EP++EHYGCMV+LL R G ++EA + +++M I+PD V+W  LLG
Sbjct: 386 EEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLG 445

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+H N+ +G+++A  L+     +SG YV LSN+YA+ GNW  V+ +R  MKE  ++K+
Sbjct: 446 ACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKD 505

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCS I++   +HEFL  D  HP++KEI  ML EI+  L+  GY P T  VL ++ E+ K
Sbjct: 506 PGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDK 565

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +N+L  HSEK+A AFGLIST PG  I+IVKNLR+C DCH+  KLISK   RKI +RDR R
Sbjct: 566 ENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKR 625

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G+CSC DYW
Sbjct: 626 FHHFQDGSCSCMDYW 640



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 155/346 (44%), Gaps = 75/346 (21%)

Query: 19  LYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEV----AAARVL---------- 63
           LY+ GG+   A  LF  +   R++  L+ +   + K G++    AAA +L          
Sbjct: 7   LYSPGGNS-PASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHH 65

Query: 64  ---------FDDMEEKDVVCWNVMIDGYAQ--HGLANEALVLFRRMLAEK-VEPNEVTAV 111
                    F+ M +++   WN +I G+++     A  A+ LF  M++++ +EPN  T  
Sbjct: 66  RDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFP 125

Query: 112 AVLSACGQIGALESGRWIH-------------------------------------SYIE 134
           +VL AC + G ++ G+ IH                                     + IE
Sbjct: 126 SVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIE 185

Query: 135 -------NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
                  + R     V +   +I+ Y + G  K AR++FD++  + VV WN+MI GY+ +
Sbjct: 186 REMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQN 245

Query: 188 GFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           GF KDA+++F EM +   ++P+ +T + +L A +  G +  G  + +   ++  I     
Sbjct: 246 GFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDDV 304

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
               ++++ S+ G +E+A  +V +     + + W  ++    +HG 
Sbjct: 305 LGSALIDMYSKCGIIEKAI-MVFERLPRENVITWSAMINGFAIHGQ 349


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/479 (47%), Positives = 317/479 (66%), Gaps = 1/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + D +V T LV +YA  G + S   +F    +  LV+ T ML   AK G++  AR
Sbjct: 139 IKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFAR 198

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M E+D V WN MI GYAQ G + EAL +F  M  E V+ NEV+ V VLSAC  + 
Sbjct: 199 KMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQ 258

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ GRW+H+Y+E  + +++ V +GTAL++MY+KCG++  A  VF  + +++V  W+S I
Sbjct: 259 VLDHGRWVHAYVERYK-VRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAI 317

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G AM+GFG+++L LFN+M R  ++P+ ITFI +L  C+  GLV EGR+ F++M++ Y I
Sbjct: 318 GGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGI 377

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYG MV++  RAG+++EA   +  M + P    W  LL ACR++ N  LGE    
Sbjct: 378 GPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQR 437

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            ++     N G YVLLSNIYA   NW+ V+ +R  MK KGV+K PGCS IE+  +VHEF+
Sbjct: 438 KIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFI 497

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP+  EI M LEEI+  L+  GYV  T  VL DI E++K+++L  HSEK+A+AFG
Sbjct: 498 VGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFG 557

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIS +    I++V NLR+C DCH V K+ISK   R+I++RDRNRFHHF +G CSC DYW
Sbjct: 558 LISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/470 (46%), Positives = 314/470 (66%), Gaps = 2/470 (0%)

Query: 11   YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
            YV   L+ +YA+ G+V     +F T+  +  VS  ++++  ++   +  ARV+F+ M ++
Sbjct: 591  YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKR 650

Query: 71   DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            DVV W  +I  Y Q G    AL LF  MLA  ++PN++T  ++LSACG +GA++ G   H
Sbjct: 651  DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 131  SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            + I         + VG +LI MY KCG  +D   VF+ + + D++ WN+++VG A +G G
Sbjct: 711  ALI-FKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLG 768

Query: 191  KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            K+A+++F +M    + P  ++F+G+L AC+HAGLV+EG   FN+M  +Y I P V HY C
Sbjct: 769  KEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTC 828

Query: 251  MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
            MV+LL RAG + EA  L+ +M ++PDSV+W  LLGACR+H N+ LG+++AE L       
Sbjct: 829  MVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPK 888

Query: 311  SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
            S TYVLLSN++A+ G WD VA +R LMK++G+ KEPG S I++ NK+H F+ GD  H + 
Sbjct: 889  SATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQI 948

Query: 371  KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
            +EIY  L+E  G  +A GY+P T  VLHD+ E+QKQN L  HSEKLAV FG++ST  G+ 
Sbjct: 949  EEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSP 1008

Query: 431  IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            I+I+KNLR+C DCH   K +SK T RKI++RD NRFHHF +G+CSCGDYW
Sbjct: 1009 IQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 66/347 (19%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +++ Y  T+++  +A+ G +  A +L+  +P++++ + T M+T YA+ G +  AR++FD+
Sbjct: 424 ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDE 483

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA--------------------EKVE-- 104
           +   +VV WN +I GY Q+G+  EA  LF++M                      E +E  
Sbjct: 484 ILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELL 543

Query: 105 ---------PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
                    P++ +  + LSAC  IG +E GR IHS +      + N  V   LI+MY+K
Sbjct: 544 IELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHS-LAIKTGCQFNSYVMNGLISMYAK 602

Query: 156 CGS-------------------------------LKDARLVFDRVNDKDVVVWNSMIVGY 184
           CG+                               L DAR+VF+++  +DVV W ++I  Y
Sbjct: 603 CGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAY 662

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
              G G+ AL LF +M    +KP+ +T   LLSAC + G +  G + F+ +  +   +  
Sbjct: 663 VQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTF 721

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +     ++ +  + G  E+ + +  +M  E D + W  +L  C  +G
Sbjct: 722 LFVGNSLITMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGCAQNG 766



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 21/321 (6%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L+   + +    R G V  A ++F  M QR +VS  +M+  Y++ G+V  AR+LFD    
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           K++  W +++ GYA+ G   EA  +F  M     E N V+  A++S   Q G L++ R +
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESM----TERNVVSWNAMISGYVQNGDLKNARKL 286

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
              +        NV    +++  Y  C  + +AR +FD++ +++ V W  MI GY     
Sbjct: 287 FDEMPEK-----NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISD 341

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACA---HAGLVNEGRRFFNTMKDEYAIEPKVE 246
             +A  +F +MCR   +P    F+ +LSA        L+   R     +K  Y  E  V 
Sbjct: 342 YWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPI--AIKTGY--EGDVV 397

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA---C-RLHGNIALGEKIAEY 302
               ++N  +R G ++ A      M  E +   W T++ A   C RL   I L E++ E 
Sbjct: 398 VGSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ 456

Query: 303 LISQNLANSGTYVLLSNIYAA 323
            ++   A    Y  +  I  A
Sbjct: 457 TVATKTAMMTAYAQVGRIQKA 477



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 124/242 (51%), Gaps = 11/242 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  Y + G +  A   F+ M E++   W  MI  +AQ G  ++A+ L+ R+  + V 
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV- 458

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
               T  A+++A  Q+G ++  R I   I N      NV    A+I  Y++ G LK+A+ 
Sbjct: 459 ---ATKTAMMTAYAQVGRIQKARLIFDEILNP-----NVVAWNAIIAGYTQNGMLKEAKD 510

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F ++  K+   W +MI G+  +   ++AL+L  E+ R    PSD +F   LSACA+ G 
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V  G R  +++  +   +        ++++ ++ G VE+   +   ++++ D+V W +L+
Sbjct: 571 VEIG-RVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK-DTVSWNSLI 628

Query: 285 GA 286
             
Sbjct: 629 SG 630


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/480 (45%), Positives = 326/480 (67%), Gaps = 1/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           T++   D D +V T L+ LYA  G + S  K+F ++P    V  T M+T  A+ G+V  A
Sbjct: 134 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFA 193

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R LF+ M E+D + WN MI GYAQ G + EAL +F  M  E V+ N V  ++VLSAC Q+
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ GRW HSYIE ++ IK+ V++ T L+++Y+KCG ++ A  VF  + +K+V  W+S 
Sbjct: 254 GALDQGRWAHSYIERNK-IKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSA 312

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + G AM+GFG+  L+LF+ M +  + P+ +TF+ +L  C+  G V+EG+R F++M++E+ 
Sbjct: 313 LNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFG 372

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP++EHYGC+V+L +RAG++E+A  ++  M ++P + +W +LL A R++ N+ LG   +
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLAS 432

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + ++    AN G YVLLSNIYA   +WD V+ VR  MK KGV+K+PGCS +E++ +VHEF
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEF 492

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             GD  HPK  +I  + ++I+  L+  GY   T  V+ DI E++K+++L +HSEK A+AF
Sbjct: 493 FVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAF 552

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G++S +    I+IVKNLRVC DCH V  +ISK   R+I++RDRNRFHHF +G CSC  +W
Sbjct: 553 GIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/479 (43%), Positives = 316/479 (65%), Gaps = 3/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V F LD+ L   T++ ++YA+ G +  AE++F+ M  +++V+ T+ L+ Y K G++++A 
Sbjct: 393 VGFELDRSL--QTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F +M  ++VV WN+MI GYAQ+G   +   L   M AE  +P+ VT + +L ACG + 
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALA 510

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            LE G+ +H+       ++ +  V T+LI MYSKCG + +AR VFD+++++D V WN+M+
Sbjct: 511 GLERGKLVHAEAVK-LGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAML 569

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY  HG G +A+ LF  M + R+ P++IT   ++SAC+ AGLV EGR  F  M++++ +
Sbjct: 570 AGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKM 629

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P+ +HYGCMV+LL RAG+++EA + +  M  EPD  +W  LLGAC+ H N+ L E+ A 
Sbjct: 630 TPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAH 689

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +++    + +  Y+ LSNIYA  G WD   +VR +M ++G++K+ G SSIE+  ++H F+
Sbjct: 690 HILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFV 749

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           A D  HP+   I+  LE +   +K  GY P  + VLHD+ + QK+ +L  HSEKLA+A+G
Sbjct: 750 AEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYG 809

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T  GT I+I+KNLRVC DCH   K ISK   R+I+ RD NRFH+F NGTCSCGD+W
Sbjct: 810 LLKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 166/306 (54%), Gaps = 11/306 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++T Y+K GE++ A  +F  M E++VV W  +I   AQH   NEA  L+ +ML   + 
Sbjct: 196 TALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGIS 255

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT V++L++C    AL  GR IHS+I + R ++ ++ V  ALI MY KC S+++AR 
Sbjct: 256 PNAVTFVSLLNSCNTPEALNRGRRIHSHI-SERGLETDMIVANALITMYCKCNSVQEARE 314

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFG-----KDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           +FDR++ +DV+ W++MI GYA  G+       +  QL   M R  + P+ +TF+ +L AC
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
              G + +GR+    +  +   E        + N+ ++ G + EA ++   M    + V 
Sbjct: 375 TAHGALEQGRQIHAEL-SKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVA 432

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W + L      G+++  EK+   + ++N+    ++ L+   YA  G+   V  + + MK 
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNVV---SWNLMIAGYAQNGDIVKVFELLSSMKA 489

Query: 340 KGVQKE 345
           +G Q +
Sbjct: 490 EGFQPD 495



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 40/336 (11%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y+K  +VA+A  +F  M  +DVV W+ MI  YA +    +A   F RM    +EP
Sbjct: 96  SLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEP 155

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N +T +++L AC     LE GR IH+ ++ +  ++ +V V TALI MYSKCG +  A  V
Sbjct: 156 NRITFLSILKACNNYSILEKGRKIHTIVK-AMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F ++ +++VV W ++I   A H    +A +L+ +M +  + P+ +TF+ LL++C     +
Sbjct: 215 FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEAL 274

Query: 226 NEGRRFF-------------------------NTMKDEYAI-----EPKVEHYGCMVNLL 255
           N GRR                           N++++   I     +  V  +  M+   
Sbjct: 275 NRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGY 334

Query: 256 SRAG-----QVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           +++G      ++E ++L+  M+ E   P+ V + ++L AC  HG +  G +I   L    
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVG 394

Query: 308 LA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              +      + N+YA  G+     +V + M  K V
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 138/292 (47%), Gaps = 41/292 (14%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA-----NEAL 92
           +  ++    ++T Y K   V  AR +FD M ++DV+ W+ MI GYAQ G       +E  
Sbjct: 290 ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVF 349

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
            L  RM  E V PN+VT +++L AC   GALE GR IH+ +      +++  + TA+ NM
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV-GFELDRSLQTAIFNM 408

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNS-------------------------------MI 181
           Y+KCGS+ +A  VF ++ +K+VV W S                               MI
Sbjct: 409 YAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMI 468

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGRRFFNTMKDEYA 240
            GYA +G      +L + M     +P  +T I +L AC A AGL  E  +  +    +  
Sbjct: 469 AGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGL--ERGKLVHAEAVKLG 526

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +E        ++ + S+ GQV EA + V D     D+V W  +L     HG+
Sbjct: 527 LESDTVVATSLIGMYSKCGQVAEA-RTVFDKMSNRDTVAWNAMLAGYGQHGD 577



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 4/241 (1%)

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T   V+  C +    E G+ +H  + +   +++++ +G +LIN YSK   +  A  V
Sbjct: 55  NSNTYGCVIEHCAKARRFEDGKMVHKQL-DELGVEIDIYLGNSLINFYSKFEDVASAEQV 113

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F R+  +DVV W+SMI  YA +     A   F  M    ++P+ ITF+ +L AC +  ++
Sbjct: 114 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSIL 173

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +GR+    +K    +E  V     ++ + S+ G++  A ++   M  E + V W  ++ 
Sbjct: 174 EKGRKIHTIVK-AMGMETDVAVATALITMYSKCGEISVACEVFHKM-TERNVVSWTAIIQ 231

Query: 286 ACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           A   H  +    ++ E ++   ++ N+ T+V L N        +   R+ + + E+G++ 
Sbjct: 232 ANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET 291

Query: 345 E 345
           +
Sbjct: 292 D 292


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/516 (43%), Positives = 320/516 (62%), Gaps = 38/516 (7%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE----- 56
            V+  LD +++V   L+ +Y + G ++ A ++   MP R +VS  +++   A+ G+     
Sbjct: 1153 VRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDAL 1212

Query: 57   --------------------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
                                            V+  + +F  +  K +V WNVMI  Y  
Sbjct: 1213 EVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMN 1272

Query: 85   HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
            + +  EA+ +F +M    V+P+ ++  +VL ACG + AL  GR IH Y+   R ++ N+ 
Sbjct: 1273 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKR-LQPNLL 1331

Query: 145  VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
            +  ALI+MY+KCG L+ AR VFD++  +DVV W SMI  Y M+G G+DA+ LF+ M  + 
Sbjct: 1332 LENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLG 1391

Query: 205  LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
            L P  I F+ +LSAC+HAGL++EGR +F  M +E  I P++EH+ CMV+LL RAGQV+EA
Sbjct: 1392 LNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEA 1451

Query: 265  YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
            Y  +  M +EP+  +WG LL ACR++ N+ +G   A+ L       SG YVLLSNIYA  
Sbjct: 1452 YGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKA 1511

Query: 325  GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
            G W+ V  VR++MK KG++K PG S+ EL N+VH FLAGD  HP+SK+IY  L+ + G +
Sbjct: 1512 GRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKM 1571

Query: 385  KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
            K  GYVP+T   LHD+ E+ K+  L VHSEKLA+AF +++T PG+ I+I KNLRVC DCH
Sbjct: 1572 KEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCH 1631

Query: 445  AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               KLISK  GR+I +RD NRFHHF NG CSCGDYW
Sbjct: 1632 IAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 153/305 (50%), Gaps = 18/305 (5%)

Query: 47   MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
            ++  YA  GE  + R +FD++ +K+VV +NVMI  Y  + L ++AL++F+ M    ++P+
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 107  EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
              T   VL A      L  G  IH+ +     + +NV VG  LI+MY KCG L +A  V 
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRV-GLDLNVFVGNGLISMYGKCGCLVEACRVL 1184

Query: 167  DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            D +  +DVV WNS++ G A +G   DAL++  EM  + LKP   T   LL A  +  L N
Sbjct: 1185 DZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDN 1244

Query: 227  EG--RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWG 281
                +  F  + ++  +      +  M+ +        EA  + + M+   ++PD++   
Sbjct: 1245 VSFVKEMFMKLANKSLVS-----WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIA 1299

Query: 282  TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLM 337
            ++L AC     + LG +I EY++ + L  +   +LL N    +YA  G  +    V   M
Sbjct: 1300 SVLPACGDLSALLLGRRIHEYVVRKRLQPN---LLLENALIDMYAKCGCLEYAREVFDQM 1356

Query: 338  KEKGV 342
            K + V
Sbjct: 1357 KFRDV 1361



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 28/192 (14%)

Query: 117  CGQI----GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
            CGQI      ++  + +HS I    ++  N  +G  L+  Y+ CG     R +FD +  K
Sbjct: 1030 CGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK 1089

Query: 173  DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------H 221
            +VV +N MI  Y  +    DAL +F  M    + P   T+  +L A +           H
Sbjct: 1090 NVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIH 1149

Query: 222  AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            A +V  G            ++  V     ++++  + G + EA +++ +M    D V W 
Sbjct: 1150 AAVVRVG------------LDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCR-DVVSWN 1196

Query: 282  TLLGACRLHGNI 293
            +L+  C  +G  
Sbjct: 1197 SLVAGCARNGQF 1208


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/481 (46%), Positives = 318/481 (66%), Gaps = 4/481 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR-SLVSLTTMLTCYAKQGEVAAA 60
           VK  ++  + +  +L+ LY+  G+++ A ++F    +   L+S  +M++ Y + G +  A
Sbjct: 297 VKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDA 356

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            +LF  M EKDVV W+ MI GYAQH   +EAL LF+ M    V P+E   V+ +SAC  +
Sbjct: 357 EMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHL 416

Query: 121 GALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             L+ G+WIH+YI  SRN ++VNV + T LI+MY KCG +++A  VF  + +K V  WN+
Sbjct: 417 ATLDLGKWIHAYI--SRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNA 474

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I+G AM+G  + +L +F +M +    P++ITF+G+L AC H GLVN+GR +FN+M  E+
Sbjct: 475 VILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEH 534

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IE  ++HYGCMV+LL RAG ++EA +L+  M + PD   WG LLGACR H +  +GE++
Sbjct: 535 KIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERL 594

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI     + G +VLLSNIYA+ GNW  V  +R +M + GV K PGCS IE +  VHE
Sbjct: 595 GRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHE 654

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FLAGD  HP+  +I  ML+ +   LK EGYVP T  V  DI E++K+ +L  HSEKLAVA
Sbjct: 655 FLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVA 714

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FGLI+  P T I++ KNLR+C DCH V KLISK   R I++RDR+RFHHF +G CSC D+
Sbjct: 715 FGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDF 774

Query: 480 W 480
           W
Sbjct: 775 W 775



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 185/419 (44%), Gaps = 104/419 (24%)

Query: 2   VKFSLDKDLYVSTSLVDLYA-------------------------------RGGDVLSAE 30
           V    D D+YV  +L++LYA                               + G+V  AE
Sbjct: 132 VSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAE 191

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLA 88
           ++F  MP+R+ ++  +M+  + ++G V  AR +F+ +   E+D+V W+ M+  Y Q+ + 
Sbjct: 192 RVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMG 251

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EALVLF  M    V  +EV  V+ LSAC ++  +E GRW+H  +     ++  V +  A
Sbjct: 252 EEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHG-LAVKVGVEDYVSLKNA 310

Query: 149 LINMYSKCGSLKDARLVFD--------------------------------RVNDKDVVV 176
           LI++YS CG + DAR +FD                                 + +KDVV 
Sbjct: 311 LIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVS 370

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF---- 232
           W++MI GYA H    +AL LF EM    ++P +   +  +SAC H   ++ G+       
Sbjct: 371 WSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYIS 430

Query: 233 -------------------------NTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYK 266
                                    N ++  YA+E K V  +  ++  L+  G VE++  
Sbjct: 431 RNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLN 490

Query: 267 LVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK-----IAEYLISQNLANSGTYVLL 317
           +  DMK     P+ + +  +LGACR  G +  G       I E+ I  N+ + G  V L
Sbjct: 491 MFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDL 549



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 11/212 (5%)

Query: 63  LFDDMEEKDVVCWNVMIDG--YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           +F+ +   +   WN ++    Y Q+   ++AL+ ++  LA   +P+  T   +L  C   
Sbjct: 60  IFNHLRNPNTFTWNTIMRAHLYLQNS-PHQALLHYKLFLASHAKPDSYTYPILLQCCAAR 118

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            +   GR +H++  +S     +V V   L+N+Y+ CGS+  AR VF+     D+V WN++
Sbjct: 119 VSEFEGRQLHAHAVSS-GFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + GY   G  ++A ++F  M       S+     +++     G V + RR FN ++    
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPERNTIASN----SMIALFGRKGCVEKARRIFNGVRGR-- 231

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            E  +  +  MV+   +    EEA  L ++MK
Sbjct: 232 -ERDMVSWSAMVSCYEQNEMGEEALVLFVEMK 262


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/438 (49%), Positives = 303/438 (69%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K GEV  A  LF+ +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 273 VNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDA 162
            PN+VT +++L AC  +GA+E GRWIH YI        N     T+LI+MY+KCG ++ A
Sbjct: 333 SPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAA 392

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD + ++ +  WN+MI G+AMHG    A  +F+ M +  ++P DITF+GLLSAC+H+
Sbjct: 393 QQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHS 452

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F +MK++Y I PK+EHYGCM++LL  +G  +EA +++  M++EPD V+W +
Sbjct: 453 GMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 512

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC+++ N+ LGE  A+ LI     N G+YVLLSNIYA  G W+ VA++R L+ +KG+
Sbjct: 513 LLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGM 572

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC DYW
Sbjct: 693 RTRFHHFRDGVCSCNDYW 710



 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 187/356 (52%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +Y + G +  A K+F     R +VS T ++T YA +G +A+A+
Sbjct: 130 LKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQ 189

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN MI GYA+ G   EAL LF+ M+   V P+E T V+V+SAC Q  
Sbjct: 190 KMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSA 249

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I++      N+++  ALI++Y KCG ++ A  +F+ ++ KDV+ WN++I
Sbjct: 250 SIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLI 308

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF--------- 232
            GY      K+AL LF EM R    P+D+T + +L ACAH G +  GR            
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG 368

Query: 233 --------NTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+   A+ +  
Sbjct: 369 VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD + +  LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 429 RMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDL 484



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M  G+A       AL L+  M++  + PN  T   +L +C +  A
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------------- 168
              G+ IH ++       +++ V T+LI+MY + G L+DAR VFD+              
Sbjct: 119 FREGQQIHGHVLK-LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 177

Query: 169 -----------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN+MI GYA  G  K+AL+LF EM +  ++P + T
Sbjct: 178 GYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 237

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + ++SACA +  +  GR+  + + D++     ++    +++L  + G+VE A  L   +
Sbjct: 238 MVSVVSACAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGL 296

Query: 272 KIEPDSVLWGTLLGA 286
             + D + W TL+G 
Sbjct: 297 SYK-DVISWNTLIGG 310



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 18/209 (8%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + + ++++WN+M  G+A+      AL L+  M  + L P+  TF  LL +CA +  
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG++   + +K  Y ++  V  +  ++++  + G++E+A K V D     D V +  L
Sbjct: 119 FREGQQIHGHVLKLGYDLDLYV--HTSLISMYVQNGRLEDARK-VFDQSSHRDVVSYTAL 175

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +      G IA  +K+ + +  +++ +    +   + YA  GN      +   M +  V+
Sbjct: 176 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMI---SGYAETGNNKEALELFKEMMKTNVR 232

Query: 344 KEPGC-----------SSIELSNKVHEFL 361
            +              +SIEL  +VH ++
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWI 261


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/461 (46%), Positives = 306/461 (66%), Gaps = 1/461 (0%)

Query: 20  YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           Y +G  +  A++LF  MP R++ +  TM+T YA+ G+++ A+ LFD M ++D V W  MI
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 381

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GY+Q G + EAL LF +M  E    N  +  + LS C  + ALE G+ +H  +      
Sbjct: 382 AGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GY 440

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           +    VG AL+ MY KCGS+++A  +F  +  KD+V WN+MI GY+ HGFG+ AL+ F  
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M R  LKP D T + +LSAC+H GLV++GR++F TM  +Y + P  +HY CMV+LL RAG
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
            +E+A+ L+ +M  EPD+ +WGTLLGA R+HGN  L E  A+ + +    NSG YVLLSN
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 620

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           +YA+ G W  V ++R  M++KGV+K PG S IE+ NK H F  GD  HP+  EI+  LEE
Sbjct: 621 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEE 680

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           ++  +K  GYV +T +VLHD+ E++K+  +  HSE+LAVA+G++    G  I+++KNLRV
Sbjct: 681 LDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRV 740

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K +++ TGR I++RD NRFHHF +G+CSCGDYW
Sbjct: 741 CEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 139/305 (45%), Gaps = 44/305 (14%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           ++  Y R G+   A KLF  MP+R LVS   M+  Y +   +  AR LF+ M E+DV  W
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N M+ GYAQ+G  ++A  +F RM     E N+V+  A+LSA  Q   +E    +    EN
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSREN 216

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
              +  N  +G      + K   + +AR  FD +N +DVV WN++I GYA  G   +A Q
Sbjct: 217 WALVSWNCLLGG-----FVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271

Query: 196 LFNEMCRIRLKPSD--ITFIGLLSACAHAGLVNEGRRFFNTM------------------ 235
           LF+E       P     T+  ++S      +V E R  F+ M                  
Sbjct: 272 LFDE------SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG 325

Query: 236 ------KDEYAIEP--KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
                 K+ + + P   V  +  M+   ++ G++ EA K + D   + D V W  ++   
Sbjct: 326 ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA-KNLFDKMPKRDPVSWAAMIAGY 384

Query: 288 RLHGN 292
              G+
Sbjct: 385 SQSGH 389



 Score = 38.5 bits (88), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 10/140 (7%)

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
           +  D D+  WN  I  Y   G   +AL++F  M R     S +++ G++S     G    
Sbjct: 58  KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFEL 113

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
            R+ F+ M +   +   V   G + N     G+  E ++++     E D   W T+L   
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRN--RNLGKARELFEIM----PERDVCSWNTMLSGY 167

Query: 288 RLHGNIALGEKIAEYLISQN 307
             +G +     + + +  +N
Sbjct: 168 AQNGCVDDARSVFDRMPEKN 187


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/484 (46%), Positives = 319/484 (65%), Gaps = 5/484 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEV 57
           +K ++  D     ++V   A+ G +    ++ + +    L S    +  ++  Y+K GEV
Sbjct: 227 MKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEV 286

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A  LF  +  KDV+ WN MI GY    L  EAL+LF+ ML     PN+VT +++L AC
Sbjct: 287 ETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPAC 346

Query: 118 GQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
            Q+GA++ GRWIH YI+   + +     + T+LI+MY+KCG ++ A  VF+ ++ + +  
Sbjct: 347 AQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSA 406

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            N+MI G+AMHG    A  +F+ M +  ++P DITF+GLLSAC+H+G+++ GRR F +M 
Sbjct: 407 CNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMT 466

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
             Y I PK+EHYGCM++LL   G  +EA +++  M +EPD V+W +LL AC++HGN+ LG
Sbjct: 467 QNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELG 526

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E  A+ LI     N G+YVLLSNIYA  G W+ VA +R L+ +KG++K PGCSSIE+ + 
Sbjct: 527 ESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSV 586

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E+ KQ +L  HSEKL
Sbjct: 587 VHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKL 646

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RDR RFHHF +G CSC
Sbjct: 647 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 706

Query: 477 GDYW 480
            DYW
Sbjct: 707 NDYW 710



 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 188/356 (52%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + DLYV TSL+ +Y + G    A K+F     R +VS T ++T YA +G + +A+
Sbjct: 130 LKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQ 189

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN +I GYA  G   EAL LF+ M+   V+P+E T V V+SAC Q G
Sbjct: 190 KMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSG 249

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +++ GR +HS+I++   +  N+++  ALI++YSKCG ++ A  +F  +++KDV+ WN+MI
Sbjct: 250 SIQLGRQVHSWIDD-HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMI 308

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACA  G ++ GR            
Sbjct: 309 GGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKG 368

Query: 230 -----RFFNTMKDEYAIEPKVE---------HY------GCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA    +E         H+        M+   +  G+   A+ +  
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFS 428

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD + +  LL AC   G + LG +I       Y I+  L + G  + L
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDL 484



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M  G+A       A+ L+  M++  + PN  T   +L +C ++  
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKV 118

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--------------- 167
            + G+ IH ++      ++++ V T+LI+MY K G  KDA  VFD               
Sbjct: 119 SKEGQQIHGHVLK-LGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALIT 177

Query: 168 ----------------RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN++I GYA  G  K+AL LF EM +  +KP + T
Sbjct: 178 GYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDEST 237

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + ++SACA +G +  GR+  + + D++ +   ++    +++L S+ G+VE A  L   +
Sbjct: 238 MVTVVSACAQSGSIQLGRQVHSWI-DDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGL 296

Query: 272 KIEPDSVLWGTLLGA 286
               D + W T++G 
Sbjct: 297 S-NKDVISWNTMIGG 310


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/517 (43%), Positives = 319/517 (61%), Gaps = 38/517 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE---- 56
            V+  LD +++V   L+ +Y + G ++ A ++   MP R +VS  +++   A+ G+    
Sbjct: 163 VVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDA 222

Query: 57  ---------------------------------VAAARVLFDDMEEKDVVCWNVMIDGYA 83
                                            V+  + +F  +  K +V WNVMI  Y 
Sbjct: 223 LEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYM 282

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
            + +  EA+ +F +M    V+P+ ++  +VL ACG + AL  GR IH Y+   R ++ N+
Sbjct: 283 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKR-LQPNL 341

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +  ALI+MY+KCG L+ AR VFD++  +DVV W SMI  Y M+G G+DA+ LF+ M  +
Sbjct: 342 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL 401

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            L P  I F+ +LSAC+HAGL++EGR +F  M +E  I P++EH+ CMV+LL RAGQV+E
Sbjct: 402 GLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 461

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
           AY  +  M +EP+  +WG LL ACR++ N+ +G   A+ L       SG YVLLSNIYA 
Sbjct: 462 AYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAK 521

Query: 324 IGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGW 383
            G W+ V  VR++MK KG++K PG S+ EL N+VH FLAGD  HP+SK+IY  L+   G 
Sbjct: 522 AGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGK 581

Query: 384 LKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDC 443
           +K  GYVP+T   LHD+ E+ K+  L VHSEKLA+AF +++T PG+ I+I KNLRVC DC
Sbjct: 582 MKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDC 641

Query: 444 HAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           H   KLISK  GR+I +RD NRFHHF NG CSCGDYW
Sbjct: 642 HIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 14/303 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  GE  + R +FD++ +K+VV +NVMI  Y  + L ++AL++F+ M    ++P+
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL A      L  G  IH+ +     + +NV VG  LI+MY KCG L +A  V 
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRV-GLDLNVFVGNGLISMYGKCGCLVEACRVL 195

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D++  +DVV WNS++ G A +G   DAL++  EM  + LKP   T   LL A  +  L N
Sbjct: 196 DQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDN 255

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
               F   M  + A +  V  +  M+ +        EA  + + M+   ++PD++   ++
Sbjct: 256 VS--FVKEMFMKLANKSLVS-WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASV 312

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLMKE 339
           L AC     + LG +I EY++ + L  +   +LL N    +YA  G  +    V   MK 
Sbjct: 313 LPACGDLSALLLGRRIHEYVVRKRLQPN---LLLENALIDMYAKCGCLEYAREVFDQMKF 369

Query: 340 KGV 342
           + V
Sbjct: 370 RDV 372



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 117 CGQI----GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           CGQI      ++  + +HS I    ++  N  +G  L+  Y+ CG     R +FD +  K
Sbjct: 41  CGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK 100

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           +VV +N MI  Y  +    DAL +F  M    + P   T+  +L A + +  +  G +  
Sbjct: 101 NVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIH 160

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
             +     ++  V     ++++  + G + EA +++  M    D V W +L+  C  +G 
Sbjct: 161 AAVV-RVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCR-DVVSWNSLVAGCARNGQ 218

Query: 293 I 293
            
Sbjct: 219 F 219


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/481 (45%), Positives = 310/481 (64%), Gaps = 3/481 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            KF    D+Y   SL++ YA  G+   A  LF  + +   VS  +++  Y K GE+  A 
Sbjct: 137 TKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMAL 196

Query: 62  VLFDDMEEKD-VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            LF  M EK+  + W  MI GY Q G+  EAL LF  M    V P+ V+  + LSAC Q+
Sbjct: 197 TLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQL 256

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE G+WIHSY   +R  +++  +   LI+MY+KCG +++A  VF  +  K V VW ++
Sbjct: 257 GALEQGKWIHSYANKTRT-RIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTAL 315

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GYA HG G++A+  F EM  + +KP+ ITF  +L+AC++ GLV EG+  FNT++ +Y 
Sbjct: 316 ISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYN 375

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           ++P +EHYGCMV+LL RAG + EA + +  M ++P++V+WG+LL AC++H NI LGEKI 
Sbjct: 376 LKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIG 435

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E LI  +  + G YV ++NI+A    WD  A  R LM+E+GV K PGCS+I L    HEF
Sbjct: 436 EILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEF 495

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD-IGEKQKQNSLEVHSEKLAVA 419
           LAGD  H + +EI      +   L+  GYVP+ + +L D + +++K+  +  HSEKLA+ 
Sbjct: 496 LAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAIT 555

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +GL+ T+PGT+I+I+KNLRVC DCH V  LISK   R I+MRDR RFHHF +G CSCGDY
Sbjct: 556 YGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDY 615

Query: 480 W 480
           W
Sbjct: 616 W 616



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 43/300 (14%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           A  V F+  +  D   WN+MI G +     + +L+L+ RML      N  T   +L AC 
Sbjct: 62  AHDVFFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACS 121

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            + A +    IH++I        ++    +LIN Y+  G+ K A L+FDR+ + D V WN
Sbjct: 122 NLSAFQETTQIHAHI-TKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWN 180

Query: 179 S--------------------------------MIVGYAMHGFGKDALQLFNEMCRIRLK 206
           S                                MI GY   G  K+ALQLF+EM    + 
Sbjct: 181 SVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVP 240

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC--MVNLLSRAGQVEEA 264
           P +++    LSAC+  G + +G+   +          +++   C  ++++ ++ G++EEA
Sbjct: 241 PDNVSLASALSACSQLGALEQGKWIHSYANK---TRTRIDSVLCCVLIDMYAKCGEMEEA 297

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAA 323
             +  +MK +   V W  L+     HG   LG E I+++L  QN+      +  + +  A
Sbjct: 298 LGVFKNMKTKSVQV-WTALISGYAYHG---LGREAISKFLEMQNMGVKPNAITFTAVLTA 353


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/436 (50%), Positives = 298/436 (68%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVE 104
           T+L  YAK GEV+ +R +FDDM EKDVV WN MI  YAQ+GL+ +A  +F  ML A   +
Sbjct: 232 TLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGK 291

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NEVT   +L AC   GAL  G  +H  +     +  NV + T++I+MY KCG  + AR 
Sbjct: 292 YNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVN-NVIMATSIIDMYCKCGQAEMARN 350

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            FD + +K+V  W +MI GY MHGF ++AL +F +M    +KP+ ITFI +L+AC+HAG 
Sbjct: 351 AFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGF 410

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG R+FN M  EY +EP VEHYGCMV+LL RAG ++EAY L+  MK+  D VLWG+LL
Sbjct: 411 LEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLL 470

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H ++ L E  A  L   + +N G YVLL+NIYA  G W  V R+R L+K++G+ K
Sbjct: 471 AACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVK 530

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG S +EL  +VH FL GD  HP+ ++IY  LEE++  L+  GYVP    VLHD+ E++
Sbjct: 531 PPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEE 590

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  + VHSEKLAVAFG++++ PG++I ++KNLRVC DCH V KLISK   R+I++RD  
Sbjct: 591 KEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAK 650

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 651 RFHHFKDGLCSCGDYW 666



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 145/303 (47%), Gaps = 54/303 (17%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  + DL+VS++L+D+Y++ G + +A  LF  +P+R++V+ T+++T              
Sbjct: 111 FGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT-------------- 156

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN---------EVTAVAVL 114
                            GY Q+  A+EAL++F+  L EK E N          V  ++VL
Sbjct: 157 -----------------GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVL 199

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVN 170
           SAC ++        +H        IKV +     V   L++ Y+KCG +  +R VFD + 
Sbjct: 200 SACSRVSNKAVSEGVHGVA-----IKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMA 254

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGR 229
           +KDVV WNSMI  YA +G   DA ++F+ M +    K +++T   LL ACAH G +  G 
Sbjct: 255 EKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGM 314

Query: 230 RFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
              +  +K  Y     V     ++++  + GQ E A      MK E +   W  ++    
Sbjct: 315 CLHDQVIKMGYV--NNVIMATSIIDMYCKCGQAEMARNAFDGMK-EKNVRSWTAMIAGYG 371

Query: 289 LHG 291
           +HG
Sbjct: 372 MHG 374



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 8/208 (3%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +++  T+++  Y K G+   AR  FD M+EK+V  W  MI GY  HG A EAL +F +M+
Sbjct: 328 NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMI 387

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
              V+PN +T ++VL+AC   G LE G RW ++ + +  N++  V+    ++++  + G 
Sbjct: 388 WAGVKPNYITFISVLAACSHAGFLEEGWRWFNA-MSHEYNVEPGVEHYGCMVDLLGRAGY 446

Query: 159 LKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA-LQLFNEMCRIRLKPSDITFIGLL 216
           +K+A  L+      +D V+W S++    +H   KD  L   +     +L PS+  +  LL
Sbjct: 447 IKEAYNLIKSMKVRRDFVLWGSLLAACRIH---KDVELAEISARELFKLDPSNCGYYVLL 503

Query: 217 SAC-AHAGLVNEGRRFFNTMKDEYAIEP 243
           +   A AG   +  R    +KD   ++P
Sbjct: 504 ANIYADAGRWKDVERMRILVKDRGLVKP 531



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 121/264 (45%), Gaps = 31/264 (11%)

Query: 33  FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
           F+T    +  +LTT+   Y            FD     DV  WN +I   A+ G + E+L
Sbjct: 23  FSTTAAATNTNLTTLFNKY------------FD---RTDVYSWNSLIAELARGGDSCESL 67

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
             F  M    ++PN  T    + +C  +  L SG+  H         + ++ V +ALI+M
Sbjct: 68  RAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQAL-VFGFESDLFVSSALIDM 126

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC---------RI 203
           YSKCG L +AR++FD +  +++V W S+I GY  +    +AL +F E            +
Sbjct: 127 YSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEV 186

Query: 204 RLKPSDITFIGLLSACAHAG--LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
                 +  I +LSAC+      V+EG    + +  +  ++  +     +++  ++ G+V
Sbjct: 187 GTSVDSVAMISVLSACSRVSNKAVSEG---VHGVAIKVGLDKVMGVENTLLDAYAKCGEV 243

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLG 285
             + K+  DM  E D V W +++ 
Sbjct: 244 SLSRKVFDDMA-EKDVVSWNSMIA 266


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 295/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T     Y K  E+  AR LFD+  EK VV WN MI GY Q+G    A+ LF+ M+  +  
Sbjct: 349 TAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFT 408

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT   +LSAC Q+G+L  G+W+H  I+ S N++ N+ V TAL++MY+KCG++ +A  
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIK-SENLEPNIYVSTALVDMYAKCGNISEAWQ 467

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +++K+ V WN+MI GY +HG+G +AL+L+NEM  +   PS +TF+ +L AC+HAGL
Sbjct: 468 LFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGL 527

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG   F+ M ++Y IEP +EHY CMV++L R+GQ+E+A + +  M +EP   +WGTLL
Sbjct: 528 VGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLL 587

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC +H +  +    +E L   +  + G YVLLSNIY+   N+   A +R ++K++ + K
Sbjct: 588 GACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAK 647

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGC+ IE++   H F++GD  H  + +IY  LE++ G ++  GY  +T   LHD+ E++
Sbjct: 648 SPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEE 707

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ ++ VHSEKLA+AFGLI+T+PG  I+I+KNLRVC DCH   K ISK T R I++RD N
Sbjct: 708 KELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDAN 767

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 768 RFHHFKDGICSCGDYW 783



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 131/248 (52%), Gaps = 3/248 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT +++ Y+K G+V  AR+LF  +   D++ +N MI G+  +G    ++ LFR +L    
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE 306

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T V ++      G L     IH +   S  I +N  V TA   +Y+K   +  AR
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKS-GIILNPTVSTAFTAIYNKLNEIDLAR 365

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD   +K VV WN+MI GY  +G  + A+ LF EM +    P+ +T   +LSACA  G
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+   + +K E  +EP +     +V++ ++ G + EA++L   M  E ++V W T+
Sbjct: 426 SLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTM 483

Query: 284 LGACRLHG 291
           +    LHG
Sbjct: 484 IFGYGLHG 491



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 43/334 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K   V  AR +FD M E+D V WN MI+G  ++   ++++ LFR M+A+ V 
Sbjct: 147 SALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVR 206

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCGSLK 160
            +  T  AVL A  ++  L+ G  I         +K+       V T LI++YSKCG + 
Sbjct: 207 VDSSTVTAVLPAAAELQELKVGMGIQCLA-----LKIGFGFCDYVLTGLISLYSKCGDVN 261

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS--- 217
            ARL+F R+N  D++ +N+MI G+  +G  + +++LF E+     + S  T +GL+    
Sbjct: 262 TARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHS 321

Query: 218 -------ACA-HAGLVNEG-----------RRFFNTMKD--------EYAIEPKVEHYGC 250
                  AC+ H   V  G              +N + +        + + E  V  +  
Sbjct: 322 PFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNA 381

Query: 251 MVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           M++  ++ G  E A   +K +M  +  P++V   T+L AC   G+++ G+ +   + S+N
Sbjct: 382 MISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSEN 441

Query: 308 L-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           L  N      L ++YA  GN     ++   M EK
Sbjct: 442 LEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK 475



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 132/306 (43%), Gaps = 51/306 (16%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACG 118
           AR LF  + + D+  +NV++ G++ +   + ++ L+  +     + P+  T    ++AC 
Sbjct: 63  ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACS 122

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
               L      HS I+   +   NV VG+AL+++Y K   +  AR VFD + ++D V+WN
Sbjct: 123 NDKHLMLLH-AHSIIDGYGS---NVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWN 178

Query: 179 SMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFI----------------------- 213
           +MI G   +    D++QLF EM    +R+  S +T +                       
Sbjct: 179 TMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKI 238

Query: 214 ----------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
                     GL+S  +  G VN  R  F  +       P +  Y  M++  +  G  E 
Sbjct: 239 GFGFCDYVLTGLISLYSKCGDVNTARLLFRRIN-----RPDLIAYNAMISGFTANGGTEC 293

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLH---GNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           + KL  ++    + V   T++G   LH   G++ L   I  + +   +  + T   +S  
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT---VSTA 350

Query: 321 YAAIGN 326
           + AI N
Sbjct: 351 FTAIYN 356



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 34/214 (15%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           +L+ ++YVST+LVD+YA+ G++  A +LF +M +++ V+  T                  
Sbjct: 441 NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNT------------------ 482

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
                        MI GY  HG  +EAL L+  ML     P+ VT ++VL AC   G + 
Sbjct: 483 -------------MIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVG 529

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVG 183
            G  I   + N   I+  ++    ++++  + G L+ A     ++  +    VW +++  
Sbjct: 530 EGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGA 589

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             +H    D  +L +E     L P  + +  LLS
Sbjct: 590 CMIHK-DTDIARLASERL-FELDPGSVGYYVLLS 621


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 294/436 (67%), Gaps = 1/436 (0%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
              +++ Y+K G +  AR +FD M  +D++ WN MI GYAQ+GL   AL    +M  + V 
Sbjct: 727  NALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVV 786

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             N+ + V++L+AC    ALE G+ +H+ I   R ++ +V+VG ALI+MY+KCGSL++A+ 
Sbjct: 787  LNKFSFVSILNACSSFSALEEGKRVHAEIVK-RKMQGDVRVGAALISMYAKCGSLEEAQE 845

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            VFD   +K+VV WN+MI  YA HG    AL  FN M +  +KP   TF  +LSAC H+GL
Sbjct: 846  VFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGL 905

Query: 225  VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            V EG R F++++ ++ + P +EHYGC+V LL RAG+ +EA  L+  M   PD+ +W TLL
Sbjct: 906  VMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLL 965

Query: 285  GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            GACR+HGN+AL E  A   +  N  N   YVLLSN+YAA G WD VA++R +M+ +G++K
Sbjct: 966  GACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRK 1025

Query: 345  EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            EPG S IE+ N +HEF+A D  HP++ EIY  L+ ++  ++  GY P TQ VLH++ ++ 
Sbjct: 1026 EPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEH 1085

Query: 405  KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            ++ SL  HSE+LA+A+GL+ T PGT I+I KNLR+C DCH   K ISK  GR+I+ RD N
Sbjct: 1086 QETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSN 1145

Query: 465  RFHHFVNGTCSCGDYW 480
            RFH F NG CSC D+W
Sbjct: 1146 RFHTFKNGKCSCEDFW 1161



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 141/242 (58%), Gaps = 3/242 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            ++++ YA+ G++  AR LF+ M ++D++ WN +I GYA+     EA+ L+++M +E V+
Sbjct: 424 NSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVK 483

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  VT + +LSAC    A   G+ IH  I  S  IK N  +  AL+NMY +CGS+ +A+ 
Sbjct: 484 PGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIMEAQN 542

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+    +D++ WNSMI G+A HG  + A +LF EM +  L+P  ITF  +L  C +   
Sbjct: 543 VFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  GR+  + +  E  ++  V     ++N+  R G +++AY++   ++   + + W  ++
Sbjct: 603 LELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR-HRNVMSWTAMI 660

Query: 285 GA 286
           G 
Sbjct: 661 GG 662



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 153/297 (51%), Gaps = 34/297 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T + + G+VA A+   +   ++DVV +N +I   AQHG   EA   + +M ++ V 
Sbjct: 323 TALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVV 382

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T ++VL+AC    AL +G  IHS+I    +   +VQ+G +LI+MY++CG L  AR 
Sbjct: 383 MNRTTYLSVLNACSTSKALGAGELIHSHISEVGH-SSDVQIGNSLISMYARCGDLPRARE 441

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +D++ WN++I GYA      +A++L+ +M    +KP  +TF+ LLSAC ++  
Sbjct: 442 LFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSA 501

Query: 225 VNEG--------------------------RRFFNTMKDEYAIE----PKVEHYGCMVNL 254
            ++G                          RR  + M+ +   E      +  +  M+  
Sbjct: 502 YSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAG 561

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            ++ G  E AYKL ++MK   +EPD + + ++L  C+    + LG +I   +I   L
Sbjct: 562 HAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGL 618



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 135/248 (54%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y + G +  A+ +F+    +D++ WN MI G+AQHG    A  LF  M  E +E
Sbjct: 525 NALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLE 584

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+++T  +VL  C    ALE GR IH  I  S  ++++V +G ALINMY +CGSL+DA  
Sbjct: 585 PDKITFASVLVGCKNPEALELGRQIHMLIIES-GLQLDVNLGNALINMYIRCGSLQDAYE 643

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +  ++V+ W +MI G+A  G  + A +LF +M     KP   TF  +L AC  +  
Sbjct: 644 VFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSAC 703

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++EG++   + +   Y ++  V +   +++  S++G + +A K V D     D + W  +
Sbjct: 704 LDEGKKVIAHILNSGYELDTGVGN--ALISAYSKSGSMTDARK-VFDKMPNRDIMSWNKM 760

Query: 284 LGACRLHG 291
           +     +G
Sbjct: 761 IAGYAQNG 768



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 133/247 (53%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y + G +  A  +F  +  ++V+ W  MI G+A  G   +A  LF +M  +  +
Sbjct: 626 NALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFK 685

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P + T  ++L AC     L+ G+ + ++I NS   +++  VG ALI+ YSK GS+ DAR 
Sbjct: 686 PVKSTFSSILKACMSSACLDEGKKVIAHILNS-GYELDTGVGNALISAYSKSGSMTDARK 744

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++ ++D++ WN MI GYA +G G  ALQ   +M    +  +  +F+ +L+AC+    
Sbjct: 745 VFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSA 804

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG+R    +     ++  V     ++++ ++ G +EEA + V D   E + V W  ++
Sbjct: 805 LEEGKRVHAEIVKR-KMQGDVRVGAALISMYAKCGSLEEAQE-VFDNFTEKNVVTWNAMI 862

Query: 285 GACRLHG 291
            A   HG
Sbjct: 863 NAYAQHG 869



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 17/333 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   V+ A  +F  M  +DV+ WN +I  YAQ G   +A  LF  M      P+
Sbjct: 123 LINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPS 182

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           ++T +++L+AC     LE G+ IHS I  +   + + +V  +L+NMY KC  L  AR VF
Sbjct: 183 KITYISILTACCSPAELEYGKKIHSKIIEA-GYQRDPRVQNSLLNMYGKCEDLPSARQVF 241

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  +DVV +N+M+  YA   + ++ + LF +M    + P  +T+I LL A     +++
Sbjct: 242 SGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLD 301

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+R      +E  +   +     +  +  R G V  A K  ++   + D V++  L+ A
Sbjct: 302 EGKRIHKLAVNE-GLNSDIRVGTALATMFVRCGDVAGA-KQALEAFADRDVVVYNALIAA 359

Query: 287 CRLHGNIALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
              HG+    E   +Y   ++   + N  TY+ + N  +          + + + E G  
Sbjct: 360 LAQHGHYE--EAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG-- 415

Query: 344 KEPGCSSIELSNKVHEFLA--GDLRHPKSKEIY 374
                S +++ N +    A  GDL  P+++E++
Sbjct: 416 ---HSSDVQIGNSLISMYARCGDL--PRARELF 443



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 135/285 (47%), Gaps = 34/285 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++    +D  V  SL+++Y +  D+ SA ++F+ + +R +VS  TML  YA++  V    
Sbjct: 210 IEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYV---- 265

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                       E + LF +M +E + P++VT + +L A     
Sbjct: 266 ---------------------------EECIGLFGQMSSEGIPPDKVTYINLLDAFTTPS 298

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ G+ IH    N   +  +++VGTAL  M+ +CG +  A+   +   D+DVVV+N++I
Sbjct: 299 MLDEGKRIHKLAVN-EGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALI 357

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              A HG  ++A + + +M    +  +  T++ +L+AC+ +  +  G    ++   E   
Sbjct: 358 AALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGH 416

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
              V+    ++++ +R G +  A +L   M  + D + W  ++  
Sbjct: 417 SSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 34/239 (14%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            E N    V ++  C +  +L   + IH+ +  +  +  ++ +   LINMY KC S+ DA
Sbjct: 78  TETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEA-GVGPDIFLSNLLINMYVKCRSVSDA 136

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF ++  +DV+ WNS+I  YA  GF K A QLF EM      PS IT+I +L+AC   
Sbjct: 137 HQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSP 196

Query: 223 GLVNEGRRFFNTMKDE-YAIEPKVEH-----------------------------YGCMV 252
             +  G++  + + +  Y  +P+V++                             Y  M+
Sbjct: 197 AELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTML 256

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            L ++   VEE   L   M    I PD V +  LL A      +  G++I +  +++ L
Sbjct: 257 GLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGL 315



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  +  D+ V  +L+ +YA+ G +  A+++F    ++++V+   M+  Y          
Sbjct: 816 VKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAY---------- 865

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHGLA++AL  F  M  E ++P+  T  ++LSAC   G
Sbjct: 866 ---------------------AQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG 904

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +  G  I S +E+   +   ++    L+ +  + G  ++A  + +++    D  VW ++
Sbjct: 905 LVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETL 964

Query: 181 IVGYAMHG 188
           +    +HG
Sbjct: 965 LGACRIHG 972


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/476 (46%), Positives = 321/476 (67%), Gaps = 4/476 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +DL+V  S++D+Y + G +    K+F  MP R ++S T +++ Y K G + +A  LFD +
Sbjct: 180 EDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGL 239

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             KD+V W VM+ G+AQ+    EA++ F +M    VE +E+T + V+SAC Q+GA +   
Sbjct: 240 PVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYAD 299

Query: 128 WIHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           WI    E S    K +V VG+ALI+MYSKCGS+ DA  VF  + +++V  ++SMI+G+AM
Sbjct: 300 WIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAM 359

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG   DA++LF+EM +  +KP+ +TFIG+L+AC+HAG+V +G + F  M+  Y I+P  +
Sbjct: 360 HGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSAD 419

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CMV+LL RAG+++EA++LV  M IEP   +WG LLGACR+H +  +    A +L   
Sbjct: 420 HYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFEL 479

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK--VHEFLAGD 364
                G Y+LL+NIYA+ G W+ V+ VR LM+ +G++K P  S IE S K  VHEF +GD
Sbjct: 480 EPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIE-SEKGMVHEFFSGD 538

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
           + HP+S EI   LE++   L+A+GY P    V +D+ ++ K+  L  HSEKLA+AFGLIS
Sbjct: 539 MTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLIS 598

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T PG+ I+IVKNLR+C DCH+V    S+ TGR+I++RD  RFHHF +G CSCG++W
Sbjct: 599 TIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 34/286 (11%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ +   +   +N +I GY       E+   +  M  E V P   T  A+  ACG    
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV-------- 174
           +  GR IH           ++ VG ++I+MY KCG L+  R VFD + ++DV        
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 175 -----------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                                  V W  M+ G+A +   ++A+  F +M    ++  +IT
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 212 FIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
            IG++SACA  G         +   K E+  +  V     ++++ S+ G V +AY++   
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYV 315
           MK E +   + +++    +HG +    K+ + ++   +  N  T++
Sbjct: 342 MK-ERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFI 386


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/492 (45%), Positives = 321/492 (65%), Gaps = 13/492 (2%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----------SLVSLTTMLT 49
            +K     D++V  SLV++Y++ G++  A K+F  M  +           +LVS   M+ 
Sbjct: 141 ALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMIN 200

Query: 50  CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
            Y K G+  +A  LF  M   D+V WN+MI GY  +G   +A+ +F  ML     P+  T
Sbjct: 201 GYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHAT 260

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
            V+VLSA   +  L  GRWIHSY+E +   +++  +GT+LI MY+KCG ++ A  VF  +
Sbjct: 261 LVSVLSAVSGLAVLGKGRWIHSYMEKN-GFELDGILGTSLIEMYAKCGCIESALTVFRAI 319

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
             K V  W ++IVG  +HG    AL LF EMC+  LKP+ I FIG+L+AC HAGLV++GR
Sbjct: 320 QKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGR 379

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
           ++F+ M +EY IEP +EHYGC+V++L RAG +EEA   + +M I P+ V+W +LLG  R 
Sbjct: 380 QYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRN 439

Query: 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           HG I +GE  A+ +I       G Y+LLSN+YAA G W+ V+ VR +M ++G +K+PGCS
Sbjct: 440 HGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 499

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVLHDIGEKQKQNS 408
           S+E    +HEF+ GD+ HP++KEIY  + E+   LK  G+VP  TQ++L   GEK+K+  
Sbjct: 500 SVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAE 559

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           LE HSE+LA+AFGLI+ +PG  I+I+KNLRVC DCH+V KL+SK   R+I++RD  RFHH
Sbjct: 560 LENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHH 619

Query: 469 FVNGTCSCGDYW 480
           F NG+CSC DYW
Sbjct: 620 FKNGSCSCMDYW 631



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 84/353 (23%)

Query: 45  TTMLTCYA--KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           + +L  Y+  K  ++  AR +FD ++ + ++ WN +I  Y ++  +++ +VLF  ++ E 
Sbjct: 52  SRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEY 111

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P+  T   V+  C ++G ++ G+ IH  +        +V V  +L+NMYSKCG +  A
Sbjct: 112 L-PDNFTLPCVIKGCARLGVVQEGKQIHG-LALKIGFGSDVFVQGSLVNMYSKCGEIDCA 169

Query: 163 RLVFDRVNDKDVVVWNS------------------------------------------M 180
           R VFD + DKDVV+WNS                                          M
Sbjct: 170 RKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLM 229

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK---- 236
           I GY ++G   DA+++F  M ++  +PS  T + +LSA +   ++ +GR   + M+    
Sbjct: 230 IAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGF 289

Query: 237 -----------DEYA----IEP-----------KVEHYGCMVNLLSRAGQVEEAYKLVMD 270
                      + YA    IE            KV H+  ++  L   G    A  L ++
Sbjct: 290 ELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLE 349

Query: 271 M---KIEPDSVLWGTLLGACRLHGNIALGEK-----IAEYLISQNLANSGTYV 315
           M    ++P+++++  +L AC   G +  G +     + EY I   L + G  V
Sbjct: 350 MCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLV 402



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 7/143 (4%)

Query: 145 VGTALINMYS--KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V + L+ +YS  K   L  AR +FDR+  + ++ WN++I  Y  + F  D + LF+E+  
Sbjct: 50  VSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVH 109

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
             L P + T   ++  CA  G+V EG++     +K  +  +  V+  G +VN+ S+ G++
Sbjct: 110 EYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQ--GSLVNMYSKCGEI 166

Query: 262 EEAYKLVMDMKIEPDSVLWGTLL 284
           + A K V D  I+ D VLW +L+
Sbjct: 167 DCARK-VFDGMIDKDVVLWNSLI 188


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/436 (48%), Positives = 308/436 (70%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA   +V  A+ +FD++ E  VV +N +I GYA+    NEAL LFR++ A K++P
Sbjct: 167 TLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKP 226

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N+VT ++VLS+C  +GAL+ G+WIH Y++ +  +   V+V TALI+MY+KCGSL  A  V
Sbjct: 227 NDVTVLSVLSSCALLGALDLGKWIHEYVKKN-GLDKYVKVNTALIDMYAKCGSLDGAISV 285

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ ++ +D   W++MIV YAMHG G+D + +F EM R +++P +ITF+GLL AC+H GLV
Sbjct: 286 FESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLV 345

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +EG R+F +M + Y I P ++HYGCMV+LL RAG + EAYK + ++ I+P  +LW TLL 
Sbjct: 346 DEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLS 405

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           +C  HGN+ L +++   ++  + ++ G YV+LSN+ A  G W+ V  +R LM  KG  K 
Sbjct: 406 SCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKI 465

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE+ N VHEF +GD  H  S  ++  L+E+   LK+ GYVP T +V+H D+ +++
Sbjct: 466 PGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEE 525

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSEKLA++FGL++T PGT+I++VKNLRVC DCH+  KLIS    R+I++RD  
Sbjct: 526 KEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQ 585

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 586 RFHHFKDGKCSCGDYW 601



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 132/258 (51%), Gaps = 6/258 (2%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAA---ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
           Q  L  LT ++    +    A+   A  LF+ + + D+V +N M  GY++     +A+ L
Sbjct: 55  QNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISL 114

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F + L   + P++ T  ++L AC    A + G+ +H  +     +  N  V   LINMY+
Sbjct: 115 FIKALNYNLLPDDYTFPSLLKACVVAKAFQQGKQLHC-LAIKLGLNENPYVCPTLINMYA 173

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
            C  +  A+ VFD + +  VV +N++I GYA      +AL LF ++   +LKP+D+T + 
Sbjct: 174 GCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLS 233

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +LS+CA  G ++ G+     +K    ++  V+    ++++ ++ G ++ A  +   M + 
Sbjct: 234 VLSSCALLGALDLGKWIHEYVKKN-GLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR 292

Query: 275 PDSVLWGTLLGACRLHGN 292
            D+  W  ++ A  +HG 
Sbjct: 293 -DTQAWSAMIVAYAMHGQ 309



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 4/181 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +  A  +F+ M  +D   W+ MI  YA HG   + + +F  M   KV+
Sbjct: 267 TALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQ 326

Query: 105 PNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P+E+T + +L AC   G ++ G R+ +S  E    I   ++    ++++  + G L +A 
Sbjct: 327 PDEITFLGLLYACSHTGLVDEGFRYFYSMSE-VYGIIPGIKHYGCMVDLLGRAGLLHEAY 385

Query: 164 LVFDRVNDKDV-VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
              D +  K   ++W +++   + HG  + A Q+ N++  +        ++ L + CA A
Sbjct: 386 KFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELD-DSHGGDYVILSNLCARA 444

Query: 223 G 223
           G
Sbjct: 445 G 445


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/475 (45%), Positives = 322/475 (67%), Gaps = 7/475 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D     S++  YA  GDV SA++LF  +   + V+ T+M+  + + G+V +AR +F++M
Sbjct: 75  RDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEM 134

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E+D+V WN MI G   + L  EAL LFR M+ E   PN  T V+VLSAC   GALE+G+
Sbjct: 135 PERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGK 194

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           W+H ++E  R ++ +  +GTAL++MY+KCG+++ A  VF  +  ++   WN+MI G AM+
Sbjct: 195 WVHVFVEKKR-LRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMN 253

Query: 188 GFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           G+   AL +F +M     + P ++TF+G+L AC+HAG V+ G+  F T+  +Y +E  +E
Sbjct: 254 GYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILE 313

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CMV+LL+R+G ++EA+KL+ +M ++PD V+W  LLG CRLH N+    K+AE +IS+
Sbjct: 314 HYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNV----KMAENVISE 369

Query: 307 NLAN-SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
             A  SG +VLLSN+YAA+G W+GV  VR  M+ KG++K PGCSS+E+   +HEF++GD 
Sbjct: 370 MEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDK 429

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP   +I+  L EI G ++  GYV +T  V +DI +++K+ +L  HSEKLA+AFGLI  
Sbjct: 430 SHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGG 489

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            P  +I+IVKNLR C DCH+  KL+SK   R+I++RDR RFHHF  G CSC D+W
Sbjct: 490 PPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
            +   A I  Y   G + DAR VFD +  +D V +NSMI GYA+ G    A +LF  +  
Sbjct: 46  TRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERV-- 103

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             L P+ +T+  +++    AG V   RR F  M +   +       GC+ N L       
Sbjct: 104 --LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALC- 160

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++ +M+    P+     ++L AC   G +  G+ +  ++  + L
Sbjct: 161 -LFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRL 205


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/481 (46%), Positives = 309/481 (64%), Gaps = 2/481 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAA 59
            VK     DLYV  + +  Y   GDV +  K+F  +P  R +V+   +L  Y + G V  
Sbjct: 158 AVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGV 217

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD M  +D V W+ +I GY + G    AL +F+ M+A+ V+ NE   V  LSA  Q
Sbjct: 218 AREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQ 277

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+++H  ++    + ++V +G ALI+MYSKCGS+  A+ VFD +  +DV  WNS
Sbjct: 278 LGLLEQGKFVHEVVKRV-GMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G DA+QLF +       P+ ITF+G+L+AC+  GLV+EGRR+F  M ++Y
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IE ++EHYGCMV+LLSRAG V+EA +L+  M+I PD VLWGT+L AC+ HG + LG  +
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITV 456

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  + A+ G YVLL++IYA    WD V +VR LM  +G  K  G S +E    VH+
Sbjct: 457 GNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHK 516

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD+ H  S  IY ML  IN  L   GYVP    VLHDIG+++K ++++VHSE+LA+A
Sbjct: 517 FLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIA 576

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +G I  + G+ I+IVKNL VC DCH   K+++K  GR+I++RD +RFHH  +G CSC DY
Sbjct: 577 YGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDY 636

Query: 480 W 480
           W
Sbjct: 637 W 637


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/440 (50%), Positives = 300/440 (68%), Gaps = 3/440 (0%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           SL  ++  Y     +  AR +FD+M ++D   V WN MI  Y Q    +EA  LF RM  
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 190

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E V  ++  A ++LSAC  +GALE G+WIH YIE S  I+++ ++ T +I+MY KCG L+
Sbjct: 191 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKCGCLE 249

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A  VF+ +  K +  WN MI G AMHG G+ A++LF EM R  + P  ITF+ +LSACA
Sbjct: 250 KASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACA 309

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F  M +   ++P +EH+GCMV+LL RAG +EEA KL+ +M + PD+ + 
Sbjct: 310 HSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVL 369

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G L+GACR+HGN  LGE+I + +I     NSG YVLL+N+YA+ G W+ VA+VR LM ++
Sbjct: 370 GALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDR 429

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV+K PG S IE  + V EF+AG   HP++KEIY  L+EI   +++ GYVP T  VLHDI
Sbjct: 430 GVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDI 489

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+N L  HSEKLA+AFGL+ T+PG +++I KNLR+C DCH   KLISK   R+I++
Sbjct: 490 DEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIII 549

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDRNRFHHF  G CSC DYW
Sbjct: 550 RDRNRFHHFRMGGCSCKDYW 569



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 113/262 (43%), Gaps = 44/262 (16%)

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN----S 136
           GY +  LA   + ++ RML + V PN+ T   ++ AC    A+E G+ IH+++      +
Sbjct: 68  GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKDAL 194
               +N      LI+MY    SL+ AR VFD +   D++ V WN+MI  Y       +A 
Sbjct: 128 DGFSLN-----NLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAF 182

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEY 239
            LF+ M    +         +LSAC   G + +G+               +   T+ D Y
Sbjct: 183 ALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMY 242

Query: 240 A---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWG 281
                            +  +  + CM+  L+  G+ E A +L  +M+ E   PD + + 
Sbjct: 243 CKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFV 302

Query: 282 TLLGACRLHGNIALGEKIAEYL 303
            +L AC   G +  G+   +Y+
Sbjct: 303 NVLSACAHSGLVEEGKHYFQYM 324



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 84/187 (44%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ D  ++T+++D+Y + G +  A ++F  +PQ+ + S   M+   A  G+  AA  
Sbjct: 225 KSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIE 284

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF +ME                                E V P+ +T V VLSAC   G 
Sbjct: 285 LFKEMER-------------------------------EMVAPDGITFVNVLSACAHSGL 313

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMI 181
           +E G+    Y+     +K  ++    ++++  + G L++AR L+ +   + D  V  +++
Sbjct: 314 VEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALV 373

Query: 182 VGYAMHG 188
               +HG
Sbjct: 374 GACRIHG 380


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/437 (47%), Positives = 300/437 (68%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           + ++  YAK G++  AR +FD + +KDV  W+ +I GY ++  + EAL LFR +     +
Sbjct: 219 SALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNEVT +AV+SAC Q+G LE+GRW+H YI  ++    +V +  +LI+M+SKCG +  A+
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH-SVSLNNSLIDMFSKCGDIDAAK 337

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD ++ KD++ WNSM+ G+A+HG G++AL  F  M    L+P +ITFIG+L+AC+HAG
Sbjct: 338 RIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAG 397

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG++ F  ++  Y +  K EHYGCMV+LL RAG + EA + +  M ++PD  +WG++
Sbjct: 398 LVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSM 457

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR++ N+ LGE+ A +L+     N G Y+LLSNIYA    W+ V +VR LM EKG+Q
Sbjct: 458 LGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQ 517

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCSS+ + N  H FLAGD  HP+  EI +ML ++   LK  GYV  T  VL +I + 
Sbjct: 518 KTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDN 577

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ S+  HSEKLA+ +GL+ ++ G  I I+KNLRVC DCH + KL+SK   R+I +RDR
Sbjct: 578 KKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDR 637

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G+CSC DYW
Sbjct: 638 NRFHHFKDGSCSCRDYW 654



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 156/269 (57%), Gaps = 16/269 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT+L  YA  G++ +AR LF+ M  ++ V W  MI GY ++   NEAL+L+++M  +   
Sbjct: 118 TTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+EVT   ++SAC ++  L  G  +HS+I    ++K+   +G+AL+NMY+KCG LK AR 
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHIR-EMDMKICAVLGSALVNMYAKCGDLKTARQ 236

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           VFD+++DKDV  W+++I GY  +    +ALQLF E+     ++P+++T + ++SACA  G
Sbjct: 237 VFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLG 296

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
            +  GR        +Y    +  H       ++++ S+ G ++ A K + D     D + 
Sbjct: 297 DLETGRWV-----HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAA-KRIFDSMSYKDLIS 350

Query: 280 WGTLLGACRLHGNIALG-EKIAEYLISQN 307
           W +++    LHG   LG E +A++ + Q 
Sbjct: 351 WNSMVNGFALHG---LGREALAQFRLMQT 376



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLS 115
           V  A  +F    E DV+ WN M+  +    +   AL  +  ML      P+  T  ++L 
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
            C  +   + G+ +H  +     +  ++ + T L+NMY+ CG LK AR +F+R+  ++ V
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYM-LHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKV 146

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
           VW SMI GY  +    +AL L+ +M      P ++T   L+SACA    +  G +  + +
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI 206

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + E  ++        +VN+ ++ G ++ A + V D   + D   W  L+
Sbjct: 207 R-EMDMKICAVLGSALVNMYAKCGDLKTA-RQVFDKLSDKDVYAWSALI 253


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 312/440 (70%), Gaps = 7/440 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L T++  YA+ G+  AAR +F  ++ + VV +N MI    +     EALVLFR M A+ +
Sbjct: 180 LPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGL 239

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTALINMYSKCGSLKD 161
           +   VT ++VLSAC  +GALE GRWIH Y+   R ++++  V+V TALI+MY KCGSL+D
Sbjct: 240 KLTSVTLISVLSACALLGALELGRWIHEYV---RKVQLDSLVKVNTALIDMYGKCGSLED 296

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VF  +  +D   W+ MIV YA H +G++A+ LF EM +  +KP D+TF+G+L AC+H
Sbjct: 297 AISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSH 356

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           +GLV+EG ++F++M+ E+ + P ++HYGC+ +LL+R+GQ++ AY+ + ++ I+P ++LW 
Sbjct: 357 SGLVSEGLQYFDSMR-EFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWR 415

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           TLL AC   G+  LG+++ E ++  + ++ G YV+ SN+ A  G W+ + RVR LM EKG
Sbjct: 416 TLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKG 475

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DI 400
           V K PGCSSIE+ N+VHEF AGD RHPKS +   M++ +   LK  GYVP T  V H ++
Sbjct: 476 VVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEM 535

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
           GE++K  SL  HSEKLA++FGL++T PGT++++VKNLRVCPDCH++ KL+S    R+I++
Sbjct: 536 GEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIIL 595

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF +G CSCGDYW
Sbjct: 596 RDLNRFHHFEDGVCSCGDYW 615



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 27/251 (10%)

Query: 52  AKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQ-------HGLANEALVLFRRMLAEKV 103
           AK  +++ AR +FD +    DVV +N ++ GYA+          A EA  +F RML E V
Sbjct: 79  AKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGV 138

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA--------LINMYSK 155
            P+  T V++L AC    A E GR  H          V V+VG A        LINMY++
Sbjct: 139 APDTYTFVSLLKACAAARAGEEGRQAHG---------VAVKVGAAEHEYVLPTLINMYAE 189

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG  + AR +F RV+ + VV +N+MI          +AL LF EM    LK + +T I +
Sbjct: 190 CGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISV 249

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           LSACA  G +  GR     ++ +  ++  V+    ++++  + G +E+A  +   M+   
Sbjct: 250 LSACALLGALELGRWIHEYVR-KVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESR- 307

Query: 276 DSVLWGTLLGA 286
           D   W  ++ A
Sbjct: 308 DRQAWSVMIVA 318


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/506 (43%), Positives = 336/506 (66%), Gaps = 33/506 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGG---------------DVLS----------------AE 30
            K+  + +L+V  SLVDLY + G               DV+S                A 
Sbjct: 154 TKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKAR 213

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
            +F  M +++LVS +TM++ YA+ G +  AR LF++M  ++VV WN MI GYAQ+    +
Sbjct: 214 MVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYAD 273

Query: 91  ALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           A+ LFR+M  E  + PN+VT V+VLSAC  +GAL+ G+WIH +I  ++ I+V + +G AL
Sbjct: 274 AIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNK-IEVGLFLGNAL 332

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
            +MY+KCG + +A+ VF  ++++DV+ W+ +I+G AM+G+  +A   F EM    L+P+D
Sbjct: 333 ADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPND 392

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           I+F+GLL+AC HAGLV++G  +F+ M   Y I PK+EHYGC+V+LLSRAG++++A  L+ 
Sbjct: 393 ISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLIN 452

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
            M ++P+ ++WG LLG CR++ +   GE++   ++  +  +SG+ V L+N+YA++G  D 
Sbjct: 453 SMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDD 512

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389
            A  R  M++    K PGCS IE++N V+EF  GD  HP+S  IY M+ E+   +K  GY
Sbjct: 513 AASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGY 572

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKL 449
            P+T +V+H+I E++K+++L  HSEKLA+AFGLI+T  GT+I+IVKNLRVC DCH   K+
Sbjct: 573 KPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKI 632

Query: 450 ISKFTGRKIMMRDRNRFHHFVNGTCS 475
           ISK   R+I++RDR+RFHHF +G CS
Sbjct: 633 ISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 124/263 (47%), Gaps = 19/263 (7%)

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRR--MLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++  +N ++  ++QH   +  +  F    +L     P+E T  +VL AC  +  +  G+ 
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H ++      + N+ V  +L+++Y K G    A+ +FD +  +DVV WN++I GY   G
Sbjct: 149 VHCFV-TKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
               A  +F+ M    L    +++  ++S  A  G + E R+ F  M     +      +
Sbjct: 208 MVDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEARQLFENMPMRNVVS-----W 258

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIE----PDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
             M+   ++  +  +A +L   M+ E    P+ V   ++L AC   G + LG+ I  + I
Sbjct: 259 NAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF-I 317

Query: 305 SQNLANSGTYV--LLSNIYAAIG 325
            +N    G ++   L+++YA  G
Sbjct: 318 RRNKIEVGLFLGNALADMYAKCG 340


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/478 (44%), Positives = 316/478 (66%), Gaps = 5/478 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  D +V TSL+++Y+  G    A + F  + Q  L S   ++   AK G +  AR LFD
Sbjct: 91  LANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFD 150

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVEPNEVTAVAVLSACGQIGA 122
            M EK+V+ W+ MI GY   G    AL LFR +      ++ PNE T  +VLSAC ++GA
Sbjct: 151 QMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGA 210

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMI 181
           L+ G+W+H+YI+ +  +K++V +GT+LI+MY+KCGS++ A+ +FD +  +KDV+ W++MI
Sbjct: 211 LQHGKWVHAYIDKT-GMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMI 269

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             ++MHG  ++ L+LF  M    ++P+ +TF+ +L AC H GLV+EG  +F  M +EY +
Sbjct: 270 TAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGV 329

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P ++HYGCMV+L SRAG++E+A+ +V  M +EPD ++WG LL   R+HG++   E    
Sbjct: 330 SPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAIT 389

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+  + ANS  YVLLSN+YA +G W  V  +R LM+ +G++K PGCS +E+   + EF 
Sbjct: 390 KLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFF 449

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  HP+   +Y+ML+EI   L+  GY   T  VL D+ E+ K+ +L +HSEKLA+A+ 
Sbjct: 450 AGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYC 509

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
            + T PGT+I+IVKNLR+C DCH   K+ISK   R+I++RD NRFHHF NG CSC DY
Sbjct: 510 FLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 33/188 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAAR 61
           K  +  D+ + TSL+D+YA+ G +  A+ +F  + P++ +++                  
Sbjct: 223 KTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMA------------------ 264

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ MI  ++ HGL+ E L LF RM+ + V PN VT VAVL AC   G
Sbjct: 265 -------------WSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGG 311

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            +  G      + N   +   +Q    ++++YS+ G ++DA  +V     + DV++W ++
Sbjct: 312 LVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGAL 371

Query: 181 IVGYAMHG 188
           + G  +HG
Sbjct: 372 LNGARIHG 379


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/483 (45%), Positives = 311/483 (64%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  D  VS++L+D+Y +        ++F  M    + S    +   ++ G+V ++ 
Sbjct: 277 IKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSL 336

Query: 62  VLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            LF  ++++    +VV W  MI   +Q+G   EAL LFR M    V+PN VT   +L AC
Sbjct: 337 RLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPAC 396

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G I AL  G+  H +    R I  +V VG+ALI+MY+KCG ++ +R+ FD +  K++V W
Sbjct: 397 GNIAALMHGKAAHCF-SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCW 455

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N++I GYAMHG  K+A+++F+ M R   KP  I+F  +LSAC+ +GL  EG  +FN+M  
Sbjct: 456 NAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSS 515

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           +Y IE +VEHY CMV LLSRAG++E+AY ++  M + PD+ +WG LL +CR+H N++LGE
Sbjct: 516 KYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGE 575

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             AE L     +N G Y+LLSNIYA+ G W+ V RVR +MK KG++K PGCS IE+ NKV
Sbjct: 576 VAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H  LAGD  HP+  +I   L++++  +K  GY P+   VL D+ E+ K+  L  HSEKLA
Sbjct: 636 HMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLA 695

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           V FGL++T PG  ++++KNLR+C DCH V K IS F  R+I +RD NRFHHF  G CSCG
Sbjct: 696 VVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCG 755

Query: 478 DYW 480
           DYW
Sbjct: 756 DYW 758



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 148/325 (45%), Gaps = 42/325 (12%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            D D +V +SLV +Y +   +  A ++F  M +  +VS + ++  YA+QG V  A+ LF 
Sbjct: 145 FDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFS 204

Query: 66  DMEEKDV----VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +M +  V    + WN MI G+   GL +EA+++F  M     EP+  T  +VL A G + 
Sbjct: 205 EMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLE 264

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-------- 173
            L  G  IH Y+   + +  +  V +ALI+MY KC    +   VFD+++  D        
Sbjct: 265 DLVMGILIHGYVIK-QGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFI 323

Query: 174 ---------------------------VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
                                      VV W SMI   + +G   +AL+LF EM    +K
Sbjct: 324 FGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVK 383

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P+ +T   LL AC +   +  G+   +       I   V     ++++ ++ G++ +A +
Sbjct: 384 PNSVTIPCLLPACGNIAALMHGKA-AHCFSLRRGISTDVYVGSALIDMYAKCGRI-QASR 441

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHG 291
           +  D     + V W  ++    +HG
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHG 466



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 104/191 (54%), Gaps = 1/191 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L+ YA     A A ++ D + E +V  ++ +I  +++    + AL  F +ML   + 
Sbjct: 52  TKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM 111

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+     + + AC  + AL+  R +H  I +      +  V ++L++MY KC  ++DA  
Sbjct: 112 PDNRVLPSAVKACAGLSALKPARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHR 170

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+ + DVV W++++  YA  G   +A +LF+EM    ++P+ I++ G+++   H+GL
Sbjct: 171 VFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGL 230

Query: 225 VNEGRRFFNTM 235
            +E    F  M
Sbjct: 231 YSEAVLMFLDM 241



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 41/243 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  +  D+YV ++L+D+YA+ G + ++   F  +P ++LV    ++  YA        
Sbjct: 412 SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYA-------- 463

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG A EA+ +F  M     +P+ ++   VLSAC Q 
Sbjct: 464 -----------------------MHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G  E G +  + + +   I+  V+    ++ + S+ G L+ A  +  R+  + D  VW +
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 180 MIVGYAMH---GFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTM 235
           ++    +H     G+ A +   E     L+PS+   +I L +  A  G+ NE  R  + M
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFE-----LEPSNPGNYILLSNIYASKGMWNEVNRVRDMM 615

Query: 236 KDE 238
           K++
Sbjct: 616 KNK 618



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 5/167 (2%)

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            +L   R  H++I  +  +  +  + T L++ Y+      DA LV D V + +V  ++++
Sbjct: 27  ASLSQTRQAHAHILKT-GLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTL 85

Query: 181 IVGYA-MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I  ++  H F   AL  F++M    L P +      + ACA    +   R+  + +    
Sbjct: 86  IYAFSKFHQF-HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV-HGIASVS 143

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             +        +V++  +  Q+ +A++ V D   EPD V W  L+ A
Sbjct: 144 GFDSDSFVQSSLVHMYIKCNQIRDAHR-VFDRMFEPDVVSWSALVAA 189


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/484 (45%), Positives = 305/484 (63%), Gaps = 5/484 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK     D  V T+L+D+Y + G      ++F       + S   ++   ++  +V  A
Sbjct: 183 AVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEA 242

Query: 61  RVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
             LF +  ++    +VV W  ++    Q+G   EA+  FR M A+  EPN VT   VL A
Sbjct: 243 LRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPA 302

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
              + AL  GR  H +    +    +V V +AL++MY+KCG +KDAR++FD +  ++VV 
Sbjct: 303 FANVAALMHGRSAHCFALR-KGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVS 361

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WN+MI GYAM+G   +A+ +F+ M + + KP  +TF  LL+AC  AGL  EGR +F  M 
Sbjct: 362 WNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMH 421

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +EY + P++EHY CMV LL RAG+++EAY L+ DM  EPD+ +WG+LLG+CR+HGN+ L 
Sbjct: 422 NEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E  AE L      N+G YVLLSNIYA+   WD V RVR +MK+ G++KE GCS IE+ NK
Sbjct: 482 EVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNK 541

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VH  LAGD  HP    I   + ++N  ++  G+VP T  VLHD+ E++K + L VHSEKL
Sbjct: 542 VHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKL 601

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           AVA GLIST PGT+++++KNLR+C DCH   K IS F GR+I +RD NRFHHF  G CSC
Sbjct: 602 AVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSC 661

Query: 477 GDYW 480
           GD+W
Sbjct: 662 GDFW 665



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 151/329 (45%), Gaps = 46/329 (13%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATM--PQRSLVSLTTMLTCYAKQGEVAAARVL 63
           L +D +V++SL+  Y R G   +A  LF  M  PQR++V  + ++  +A +G+   A  L
Sbjct: 48  LARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRL 107

Query: 64  FDDME-----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSAC 117
            ++M      E +V+ WN ++ G  + G A +A+V    M  E  + P+       LSA 
Sbjct: 108 LEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAV 167

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G +G +  G+ +H Y   +   + +  V TALI+MY KCG   +   VFD  +  DV   
Sbjct: 168 GDVGLVSVGQQLHGYAVKA-GCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASC 226

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N++I G + +    +AL+LF E     ++ + +++  +++ C   G   E   FF  M+ 
Sbjct: 227 NALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQA 286

Query: 238 EYAIEPKVEHYGC-----------------------------------MVNLLSRAGQVE 262
           +   EP      C                                   +V++ ++ G+V+
Sbjct: 287 Q-GTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVK 345

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +A +++ D  +  + V W  ++G   ++G
Sbjct: 346 DA-RIIFDTMVSRNVVSWNAMIGGYAMYG 373



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 43/218 (19%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVVVWNSM 180
           L   R +H+  E S  +  +  V ++L++ Y + G+  +AR +FD +    + VV W+++
Sbjct: 33  LPLARALHAVAEVS-GLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSAL 91

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +  +A  G  + A +L  EM R                                   +  
Sbjct: 92  VAAHAARGDAEGAWRLLEEMRR-----------------------------------DGG 116

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK----IEPDSVLWGTLLGACRLHGNIALG 296
           +EP V  +  +V+ L+R+G+  +A   +  M     + PD+      L A    G +++G
Sbjct: 117 VEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVG 176

Query: 297 EKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARV 333
           +++  Y +     A++     L ++Y   G    V RV
Sbjct: 177 QQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRV 214


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/483 (45%), Positives = 318/483 (65%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  D +V ++++D+Y + G V    ++F  + +  + SL   LT  ++ G V  A 
Sbjct: 267 IKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTAL 326

Query: 62  VLF----DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            +F    D   E +VV W  +I   +Q+G   EAL LFR M A  VEPN VT  +++ AC
Sbjct: 327 EVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPAC 386

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G I AL  G+ IH +    R I  +V VG+ALI+MY+KCG ++ AR  FD+++  ++V W
Sbjct: 387 GNISALMHGKEIHCF-SLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSW 445

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+++ GYAMHG  K+ +++F+ M +   KP  +TF  +LSACA  GL  EG R +N+M +
Sbjct: 446 NAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSE 505

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           E+ IEPK+EHY C+V LLSR G++EEAY ++ +M  EPD+ +WG LL +CR+H N++LGE
Sbjct: 506 EHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGE 565

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             AE L      N G Y+LLSNIYA+ G WD   R+R +MK KG++K PG S IE+ +KV
Sbjct: 566 IAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKV 625

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H  LAGD  HP+ K+I   L+++N  +K  GY+P+T  VL D+ E+ K+  L  HSEKLA
Sbjct: 626 HMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLA 685

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           V  GL++T PG  ++++KNLR+C DCHAV K+IS+  GR+I +RD NRFHHF +G CSCG
Sbjct: 686 VVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCG 745

Query: 478 DYW 480
           D+W
Sbjct: 746 DFW 748



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 130/239 (54%), Gaps = 6/239 (2%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V++SL  +Y +   +L A KLF  MP R +V  + M+  Y++ G V  A+ LF +M 
Sbjct: 138 DSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMR 197

Query: 69  ----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
               E ++V WN M+ G+  +G  +EA+ +FR ML +   P+  T   VL A G +  + 
Sbjct: 198 SGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVV 257

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G  +H Y+   + +  +  V +A+++MY KCG +K+   VFD V + ++   N+ + G 
Sbjct: 258 VGAQVHGYVIK-QGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGL 316

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
           + +G    AL++FN+    +++ + +T+  ++++C+  G   E    F  M+  Y +EP
Sbjct: 317 SRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ-AYGVEP 374



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 4/194 (2%)

Query: 45  TTMLTCYAKQGEVAAARV---LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           T++L+ YA    ++  ++   L   +    +  ++ +I  +A+       L  F  +   
Sbjct: 39  TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPL 98

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           ++ P+     + + +C  + AL+ G+ +H++   S  +  ++ V ++L +MY KC  + D
Sbjct: 99  RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSI-VASSLTHMYLKCDRILD 157

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           AR +FDR+ D+DVVVW++MI GY+  G  ++A +LF EM    ++P+ +++ G+L+   +
Sbjct: 158 ARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGN 217

Query: 222 AGLVNEGRRFFNTM 235
            G  +E    F  M
Sbjct: 218 NGFYDEAVGMFRMM 231


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/447 (48%), Positives = 311/447 (69%), Gaps = 6/447 (1%)

Query: 38  QRSLVSLTTMLTCYAKQG--EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
           +R+   + TML  YAK G  ++  AR +FD ME +DVV WN MI  YAQ+G++ EA+ L+
Sbjct: 84  ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLY 142

Query: 96  RRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
            +ML     ++ N V   AVL AC   GA+++G+ IH+ +     ++ NV VGT++++MY
Sbjct: 143 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVR-MGLEENVYVGTSIVDMY 201

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           SKCG ++ A   F ++ +K+++ W++MI GY MHG G++AL++F EM R  L+P+ ITFI
Sbjct: 202 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 261

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L+AC+HAGL++EGR ++N MK E+ IE  VEHYGCMV+LL RAG ++EAY L+ +MK+
Sbjct: 262 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 321

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
           +PD+ +WG LL ACR+H N+ L E   + L   + +NSG YVLLSNIYA  G W  V R+
Sbjct: 322 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERI 381

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           R L+K + ++K PG SS EL  K++ F  GD  HP+  EIY  LE++   ++  GYVP T
Sbjct: 382 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 441

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VLHD+ E++K+++L +HSEKLAVAF L+++ P + I I+KNLRVC DCH   K I+K 
Sbjct: 442 GSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 501

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T R+I++RD  RFHHF +G CSC DYW
Sbjct: 502 TEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 10/238 (4%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP--NEVTAVAVLSAC 117
           AR  FD++ + + V    M  GY ++ L   +L LFR M+A       +E  A+   SA 
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVV 175
            ++        +H+ I      + N  V   +++ Y+K GS  L+ AR VFD + ++DVV
Sbjct: 63  ARVPDRGVTASLHALIAKI-GFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVV 120

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
            WNSMI  YA +G   +A+ L+++M  +   +K + +    +L ACAHAG +  G+   N
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHN 180

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +     +E  V     +V++ S+ G+VE A +    +K E + + W  ++    +HG
Sbjct: 181 QVV-RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHG 236



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 90/188 (47%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+  L++++YV TS+VD+Y++ G V  A + F  + +++++S + M+T           
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMIT----------- 230

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GY  HG   EAL +F  M    + PN +T ++VL+AC   
Sbjct: 231 --------------------GYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHA 270

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
           G L+ GR+ ++ ++    I+  V+    ++++  + G L +A  +   +  K D  +W +
Sbjct: 271 GLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGA 330

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 331 LLSACRIH 338


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 293/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y+K  E+ +AR LFD+  EK +  WN MI GY Q+GL  +A+ LFR M   +  
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS 417

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT   +LSAC Q+GAL  G+W+H  +  S + + ++ V TALI MY+KCGS+ +AR 
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVR-STDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  K+ V WN+MI GY +HG G++AL +F+EM    + P+ +TF+ +L AC+HAGL
Sbjct: 477 LFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG   FN+M   Y  EP V+HY C+V++L RAG ++ A + +  M I+P   +W TLL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLL 596

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H +  L   ++E L   +  N G +VLLSNI++A  N+   A VR   K++ + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG + IE+    H F +GD  HP+ K I+  LE++ G ++  GY P+T++ LHD+ E++
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEE 716

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++  ++VHSE+LA+AFGLI+T+PGT I+I+KNLRVC DCH   KLISK T R I++RD N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDAN 776

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 777 RFHHFKDGVCSCGDYW 792



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 6/249 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT  ++ Y+K G++  A  LF +    D+V +N MI GY  +G    +L LF+ ++    
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +    T V+++   G +  + +   IH Y   S N   +  V TAL  +YSK   ++ AR
Sbjct: 319 KLKSSTLVSLVPVSGHLMLIYA---IHGYSLKS-NFLSHTSVSTALTTVYSKLNEIESAR 374

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD   +K +  WN+MI GY  +G  +DA+ LF EM      P+ +T   +LSACA  G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+   + ++     E  +     ++ + ++ G + EA +L  D   + + V W T+
Sbjct: 435 ALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRL-FDFMPKKNEVTWNTM 492

Query: 284 LGACRLHGN 292
           +    LHG+
Sbjct: 493 ISGYGLHGH 501



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 147/334 (44%), Gaps = 45/334 (13%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
           + ++  Y K   V  AR +FD M EKD + WN MI GY ++ +  E++ +FR ++ E   
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T + +L A  ++  L  G  IHS +        +  V T  I++YSKCG +K A 
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHS-LATKTGCYSHDYVLTGFISLYSKCGKIKMAS 276

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F      D+V +N+MI GY  +G  + +L LF E+     K    T + L+    H  
Sbjct: 277 TLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLM 336

Query: 224 LV-----------------------------NE---GRRFFNTMKDEYAIEPKVEHYGCM 251
           L+                             NE    R+ F    DE + E  +  +  M
Sbjct: 337 LIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLF----DE-SPEKSLPSWNAM 391

Query: 252 VNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           ++  ++ G  E+A  L  +M+     P+ V    +L AC   G ++LG+ + + + S + 
Sbjct: 392 ISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451

Query: 309 ANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
             S  YV   L  +YA  G+     R+   M +K
Sbjct: 452 -ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK 484



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 158/377 (41%), Gaps = 55/377 (14%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTC-YAKQGEVAAARVLFDDMEEK 70
           + +DL+ R   +    +  A +     R+ +SL T LT   +  G +  AR +F  ++  
Sbjct: 22  NFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRP 81

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           DV  +NV++ G++ +   + +L +F  +  +  ++PN  T    +SA        +G  I
Sbjct: 82  DVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVI 141

Query: 130 H--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           H  + ++   +    + +G+ ++ MY K   ++DAR VFDR+ +KD ++WN+MI GY  +
Sbjct: 142 HGQAIVDGCDS---ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198

Query: 188 GFGKDALQLF----NEMC-------------------RIRLK-------------PSDIT 211
               +++Q+F    NE C                    +RL                D  
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
             G +S  +  G +      F   +      P +  Y  M++  +  G+ E +  L  ++
Sbjct: 259 LTGFISLYSKCGKIKMASTLFREFR-----RPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIGNWDGV 330
            +    +   TL+    + G++ L   I  Y +  N L+++     L+ +Y+ +     +
Sbjct: 314 MLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNE---I 370

Query: 331 ARVRTLMKEKGVQKEPG 347
              R L  E   +  P 
Sbjct: 371 ESARKLFDESPEKSLPS 387



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 31/157 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            +  +YVST+L+ +YA+ G +  A +LF  MP+++ V+  TM++                
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMIS---------------- 494

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GY  HG   EAL +F  ML   + P  VT + VL AC   G ++ 
Sbjct: 495 ---------------GYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKE 539

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           G  I + + +    + +V+    ++++  + G L+ A
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRA 576


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/430 (50%), Positives = 295/430 (68%), Gaps = 1/430 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK G    A+ +FDDM E++V  W VMI G AQHG  +EA  LF +ML E + P+  T 
Sbjct: 480 YAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTY 539

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V++LSAC   GALE  + +HS+  N+  +  +++VG AL++MY+KCGS+ DAR VFD + 
Sbjct: 540 VSILSACASTGALEWVKEVHSHAVNA-GLVSDLRVGNALVHMYAKCGSVDDARRVFDDML 598

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           ++DV  W  MI G A HG G DAL LF +M     KP+  +F+ +LSAC+HAGLV+EGRR
Sbjct: 599 ERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRR 658

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
            F ++  +Y IEP +EHY CMV+LL RAGQ+EEA   +++M IEP    WG LLGAC  +
Sbjct: 659 QFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTY 718

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
           GN+ + E  A+  +     ++ TYVLLSNIYAA GNW+    VR++M+ +G++KEPG S 
Sbjct: 719 GNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSW 778

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLE 410
           IE+ N++H F+ GD  HP+SKEIY  L+++   LKAEGYVP T++VL +  ++ K+ +L 
Sbjct: 779 IEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALC 838

Query: 411 VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470
            HSEKLA+ +GL+ T     I++ KNLRVC DCH   K ISK TGR+I+ RD  RFHHF 
Sbjct: 839 SHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFK 898

Query: 471 NGTCSCGDYW 480
           +G CSCGDYW
Sbjct: 899 DGVCSCGDYW 908



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 207/422 (49%), Gaps = 49/422 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K G +  A+++FD M E++V+ W VMI G A +G   EA   F +M  E   
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T V++L+A    GALE  + +HS+  N+  + ++++VG AL++MY+K GS+ DAR+
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDARV 187

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + ++D+  W  MI G A HG G++A  LF +M R    P+  T++ +L+A A    
Sbjct: 188 VFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITST 247

Query: 225 -----VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
                V E  +  +  K  +  + +V +   ++++ ++ G +++A +LV D   + D + 
Sbjct: 248 GALEWVKEVHK--HAGKAGFISDLRVGN--ALIHMYAKCGSIDDA-RLVFDGMCDRDVIS 302

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           W  ++G   L  N    E    +L  Q    + +S TY+ L N + + G W+ V  V   
Sbjct: 303 WNAMIGG--LAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKH 360

Query: 337 MKEKG-----------VQKEPGCSSIELSNKVHEFLA------------GDLRHPKSKEI 373
             E G           V     C SI+ +  + + LA            G  +    +E 
Sbjct: 361 AVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREA 420

Query: 374 YMMLEEINGWLKAEGYVPQT----QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
             +  +    ++ EG+ P       I+  ++GE+  +   EVHS   A+  GL+  + G 
Sbjct: 421 LSLFLQ----MRREGFFPDATTFVNILSANVGEEALEWVKEVHS--YAIDAGLVDLRVGN 474

Query: 430 SI 431
           ++
Sbjct: 475 AL 476



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 166/332 (50%), Gaps = 38/332 (11%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAK G +  AR++FD M ++DV+ WN MI G AQ+G  +EA  +F +M  E   P
Sbjct: 274 ALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVP 333

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T +++L+     GA E  + +H +      +  +++VG+A ++MY +CGS+ DA+L+
Sbjct: 334 DSTTYLSLLNTHVSTGAWEWVKEVHKHAVEV-GLVSDLRVGSAFVHMYIRCGSIDDAQLI 392

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA------- 218
           FD++  ++V  WN+MI G A    G++AL LF +M R    P   TF+ +LSA       
Sbjct: 393 FDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEAL 452

Query: 219 ---------CAHAGLVNEGRRFFNTMKDEYA---------------IEPKVEHYGCMVNL 254
                       AGLV+   R  N +   YA               +E  V  +  M++ 
Sbjct: 453 EWVKEVHSYAIDAGLVD--LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISG 510

Query: 255 LSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           L++ G   EA+ L + M    I PD+  + ++L AC   G +   +++  + ++  L + 
Sbjct: 511 LAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD 570

Query: 312 -GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                 L ++YA  G+ D   RV   M E+ V
Sbjct: 571 LRVGNALVHMYAKCGSVDDARRVFDDMLERDV 602



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 132/241 (54%), Gaps = 4/241 (1%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y + G +  A+++FD +  ++V  WN MI G AQ     EAL LF +M  E   P+  T 
Sbjct: 380 YIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTF 439

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V +LSA     ALE  + +HSY  ++    V+++VG AL++MY+KCG+   A+ VFD + 
Sbjct: 440 VNILSANVGEEALEWVKEVHSYAIDAG--LVDLRVGNALVHMYAKCGNTMYAKQVFDDMV 497

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +++V  W  MI G A HG G +A  LF +M R  + P   T++ +LSACA  G + E  +
Sbjct: 498 ERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGAL-EWVK 556

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
             ++      +   +     +V++ ++ G V++A ++  DM +E D   W  ++G    H
Sbjct: 557 EVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQH 615

Query: 291 G 291
           G
Sbjct: 616 G 616



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 133/215 (61%), Gaps = 5/215 (2%)

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           MI GYA++G A +A+ ++ +M  E  +PNE+T +++L AC    +L+ G+ IH++I  S 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQS- 59

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
             + +V+V TAL+NMY KCGS+ DA+L+FD++ +++V+ W  MI G A +G G++A   F
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRF 119

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLS 256
            +M R    P+  T++ +L+A A AG +   +    + +    A++ +V +   +V++ +
Sbjct: 120 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGN--ALVHMYA 177

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++G +++A ++V D  +E D   W  ++G    HG
Sbjct: 178 KSGSIDDA-RVVFDGMVERDIFSWTVMIGGLAQHG 211


>gi|308080542|ref|NP_001183145.1| uncharacterized protein LOC100501514 [Zea mays]
 gi|238009628|gb|ACR35849.1| unknown [Zea mays]
          Length = 332

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/332 (61%), Positives = 262/332 (78%), Gaps = 3/332 (0%)

Query: 152 MYSKCGSLKDARLVFDRVN---DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           MY KCGSL++A  VF  +    D+DVV WN+MI GYAMHG  ++AL+ F ++    L P+
Sbjct: 1   MYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPT 60

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           DITFIG+L+AC+H+GLV+EGR     M++EY I PKVEHYGCMV+LL RAG+VEEA+ LV
Sbjct: 61  DITFIGVLNACSHSGLVDEGRALLAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLV 120

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
             MK +PD+ +W +LLGACRLH N+ALG+++A+YL++  LANSGTYVLLSN+YAA G W 
Sbjct: 121 RSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVANGLANSGTYVLLSNMYAAAGKWR 180

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            V RVR++M+  GVQKEPGCS++E+  +V EF+AGD  HP+S EIY  LEE+N   +A G
Sbjct: 181 EVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARG 240

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           +VP T++VLHD+ +  K+ +L VHSEKLA+AFGLIST P T IKIVKNLR C DCHAV K
Sbjct: 241 HVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLK 300

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+S+ TGRKI+ RDRNRFHHFV+G+CSCGDYW
Sbjct: 301 LVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 332



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 10/144 (6%)

Query: 51  YAKQGEVAAARVLFDDME---EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
           Y K G +  A  +F D+    ++DVV WN MI+GYA HG + EAL  F ++ A+ + P +
Sbjct: 2   YYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTD 61

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
           +T + VL+AC   G ++ GR + + +E    I   V+    ++++  + G +++A   FD
Sbjct: 62  ITFIGVLNACSHSGLVDEGRALLAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEA---FD 118

Query: 168 RVND----KDVVVWNSMIVGYAMH 187
            V       D  +W S++    +H
Sbjct: 119 LVRSMKAKPDAAMWASLLGACRLH 142


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 319/480 (66%), Gaps = 2/480 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   ++D YV  SLV +YA  GD+ +A  +F  M +  +VS T M+  Y + G+  +AR
Sbjct: 144 IKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSAR 203

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M E+++V W+ MI GYA++    +A+  F  + AE V  NE   V V+S+C  +G
Sbjct: 204 ELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLG 263

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G   H Y+  ++ + +N+ +GTA+++MY++CG+++ A +VF+++ +KDV+ W ++I
Sbjct: 264 ALAMGEKAHEYVMRNK-LSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALI 322

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G AMHG+ + AL  F+EM +    P DITF  +L+AC+HAG+V  G   F +MK ++ +
Sbjct: 323 AGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGV 382

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+LL RAG++ +A K V+ M ++P++ +W  LLGACR+H N+ +GE++ +
Sbjct: 383 EPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGK 442

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+      SG YVLLSNIYA    W  V  +R +MK+KGV+K PG S IE+  KVHEF 
Sbjct: 443 ILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFT 502

Query: 362 AGDLRHPKSKEIYMMLEEIN-GWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
            GD  HP+ ++I  + E+I    +K  GYV  T   + DI E++K+ +L  HSEKLA+A+
Sbjct: 503 IGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAY 562

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G++  +  T I+IVKNLRVC DCH   KLISK    ++++RDRNRFHHF  GTCSC DYW
Sbjct: 563 GIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/469 (46%), Positives = 309/469 (65%), Gaps = 1/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +S +++D+Y + G   +A K+F  MP +++V+  +++    + G++  A  +FD+M E+D
Sbjct: 369 ISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           +V WN MI    Q  +  EA+ LFR M  + +  + VT V + SACG +GAL+  +W+ +
Sbjct: 429 LVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCT 488

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YIE + +I V++Q+GTAL++M+S+CG    A  VF R+  +DV  W + I   AM G  +
Sbjct: 489 YIEKN-DIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTE 547

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            A++LFNEM   ++KP D+ F+ LL+AC+H G V++GR+ F +M+  + I P + HYGCM
Sbjct: 548 GAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCM 607

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG +EEA  L+  M IEP+ V+WG+LL ACR H N+ L    AE L        
Sbjct: 608 VDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERV 667

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G +VLLSNIYA+ G W  VARVR  MKEKGVQK PG SSIE+   +HEF +GD  H ++ 
Sbjct: 668 GIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENT 727

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
            I +MLEEIN  L   GYVP T  VL D+ E++K++ L  HSEKLA+A+GLI+T  G  I
Sbjct: 728 HIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPI 787

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++VKNLR+C DCH+  KL+SK   R+I +RD NR+H F  G CSC DYW
Sbjct: 788 RVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 151/274 (55%), Gaps = 11/274 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YA+ G+V   R LFD M E++VV W  +I+GY+   L+ EA+ LF +M    VEP
Sbjct: 170 SLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEP 229

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N VT V V+SAC ++  LE G+ + SYI +   ++++  +  AL++MY KCG +  AR +
Sbjct: 230 NPVTMVCVISACAKLKDLELGKKVCSYI-SELGMELSTIMVNALVDMYMKCGDICAARQI 288

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD   +K++V++N+++  Y  H +  D L + +EM +   +P  +T +  ++ACA  G +
Sbjct: 289 FDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDL 348

Query: 226 NEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           + G+         Y +   +E +      ++++  + G+ E A K+   M      V W 
Sbjct: 349 SVGKS-----SHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWN 402

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
           +L+      G++ L  +I + ++ ++L +  T +
Sbjct: 403 SLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMI 436



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 136/284 (47%), Gaps = 34/284 (11%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S + +  ++  Y K G++ AAR +FD+   K++V +N ++  Y  H  A++ LV+   ML
Sbjct: 265 STIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEML 324

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            +   P++VT ++ ++AC Q+G L  G+  H+Y+  +  ++    +  A+I+MY KCG  
Sbjct: 325 QKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCGKR 383

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHG------------------------------- 188
           + A  VF+ + +K VV WNS+I G    G                               
Sbjct: 384 EAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVS 443

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             ++A++LF EM    +    +T +G+ SAC + G ++   ++  T  ++  I   ++  
Sbjct: 444 MFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA-KWVCTYIEKNDIHVDLQLG 502

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
             +V++ SR G    A  +   M+ + D   W   +G   + GN
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMAMEGN 545



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 161/355 (45%), Gaps = 57/355 (16%)

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           DD     +  +N +I GYA  GL ++A++L+ +ML   + P++ T   +LSAC +I AL 
Sbjct: 88  DDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALS 147

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G  +H  +     ++ ++ V  +LI+ Y++CG +   R +FD + +++VV W S+I GY
Sbjct: 148 EGVQVHGAVLK-MGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGY 206

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           +     K+A+ LF +M    ++P+ +T + ++SACA    +  G++  + +  E  +E  
Sbjct: 207 SGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYIS-ELGMELS 265

Query: 245 VEHYGCMVNLLSRAGQVEEAYKL------------------------------VMDMKIE 274
                 +V++  + G +  A ++                              ++D  ++
Sbjct: 266 TIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQ 325

Query: 275 ----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
               PD V   + + AC   G++++G+    Y++   L                  WD +
Sbjct: 326 KGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLE----------------GWDNI 369

Query: 331 ARVRTLMKEKGVQKEPGCSSIE-LSNKV----HEFLAGDLRHPKSKEIYMMLEEI 380
           +     M  K  ++E  C   E + NK     +  +AG +R    +  + + +E+
Sbjct: 370 SNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEM 424


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/479 (46%), Positives = 306/479 (63%), Gaps = 31/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VKF  D D++V  ++V +Y                             C    G +  AR
Sbjct: 136 VKFGFDDDIFVQNTMVHMYC---------------------------CC---SGGMEFAR 165

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD+M + D V W  MI GYA+ G +  A+ LFR+M    V P++VT V+VLSAC  +G
Sbjct: 166 KLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLG 225

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+WI SYIE  R +K  V++  AL++M++KCG +  A  +F  ++ + +V W S+I
Sbjct: 226 ALELGKWIESYIEKERVLK-TVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVI 284

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VG AMHG G +A+ LF EM    + P DI FIGLLSAC+H+GLV  GR++F+ M  ++ I
Sbjct: 285 VGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGI 344

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            PK+EHYGCMV+LLSRAG V EA + V  M IEP+ ++W TL+ ACR+HG + LGE I++
Sbjct: 345 VPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISK 404

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     +   YVLLSNIY  + +W+  +++R  M +KG+QK PG + IEL N++HEF+
Sbjct: 405 QLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFI 464

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  H +  EI  M+ E+   +K  GY P T  V  DI E+ K+++L  HSEKLA+AF 
Sbjct: 465 VGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFA 524

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T PG+ I+I KNLRVC DCH+  K ISK   R+I+MRDR+RFHHF +G CSCGD+W
Sbjct: 525 LLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLA-NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           +D    D   ++ +I  YA+   + + A+  +  ML   + PN+     VL AC  +  L
Sbjct: 66  EDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDL 125

Query: 124 ESGRWIH-SYIENSRNIKVNVQVGTALINMYSKC-GSLKDARLVFDRVNDKDVVVWNSMI 181
             G+ +H S ++   +  + VQ    +++MY  C G ++ AR +FD +   D V W +MI
Sbjct: 126 NLGKAVHGSLVKFGFDDDIFVQ--NTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMI 183

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA  G    A+ LF +M    + P D+T + +LSAC   G +  G+   + ++ E  +
Sbjct: 184 GGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVL 243

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  VE    +V++ ++ G V++A  L  +M  +   V W +++    +HG
Sbjct: 244 K-TVELSNALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMHG 291


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/483 (44%), Positives = 325/483 (67%), Gaps = 6/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ +L+V+ +L+ +Y     V+ A K+F   P R + S   ML+ YA+ G++  AR
Sbjct: 129 IKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEAR 188

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD+M EKDVV W  MI G  Q G   EAL +F  MLA+ + PNE T  + L+AC  + 
Sbjct: 189 QLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLV 248

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD---RVNDKDVVVWN 178
           AL+ GRW+H YI+ + NI++N ++   LI+MY+KCG L+ A  +F+   R+  K V  WN
Sbjct: 249 ALDQGRWMHVYIKKN-NIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRK-VWPWN 306

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +MI G+A+HG  K+A+++F +M   ++ P+ +TF+ LL+AC+H   V EGR +F +M   
Sbjct: 307 AMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASH 366

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           Y ++P++EHYGC+V+LL RAG+++EA +++  M + PD  +WG LL AC++H +  +GE+
Sbjct: 367 YRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGER 426

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           + + +   +  + G +VLL+NIY+  GNW+    +R  + E G +K PGCSSIEL+   H
Sbjct: 427 VGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFH 486

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLA 417
           +FL GD  HP++K++Y+ L+E+   LK  GY+P++  VL DI + + ++ +L  HSEKLA
Sbjct: 487 QFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLA 546

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL++T P T I+IVKNLRVC DCH   K ISK   R+I++RDR R+HHF +GTCSC 
Sbjct: 547 IAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCN 606

Query: 478 DYW 480
           DYW
Sbjct: 607 DYW 609


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/434 (49%), Positives = 303/434 (69%), Gaps = 1/434 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K GEV  A  LF+ +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 273 VNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 332

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
            PNEVT +++L AC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG ++ A
Sbjct: 333 SPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAA 392

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD + ++ +  WN+MI G+AMHG    A  +F+ M +  ++P DITF+GLLSAC+H+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHS 452

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F +M ++Y I PK+EHYGCM++LL  +G  +EA +++  M+++PD V+W +
Sbjct: 453 GMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCS 512

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++HGN+ LGE  A+ LI     NSG+YVLLSNIYA  G W+ VA+ R L+ +KG+
Sbjct: 513 LLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGM 572

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 463 RNRFHHFVNGTCSC 476
           R RFHHF +G CSC
Sbjct: 693 RTRFHHFXDGVCSC 706



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 186/356 (52%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +Y + G    A K+F     R +VS T ++  YA  G + +A+
Sbjct: 130 LKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQ 189

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN +I GYA+ G   EAL LF+ M+   V+P+E T V VLSAC Q  
Sbjct: 190 KMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSA 249

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I++      N+++  ALI++Y KCG ++ A  +F+ ++ KDV+ WN++I
Sbjct: 250 SIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLI 308

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+++T + +L ACAH G ++ GR            
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 230 -----RFFNTMKDEYA----IEPKVEHYGCMVNL-----------LSRAGQVEEAYKLVM 269
                    ++ D YA    IE   + +  M+N             +  G+   A+ +  
Sbjct: 369 VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFS 428

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD + +  LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 429 RMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDL 484



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD ++E +++ WN M  G+A       AL L+  M++  + PN  T   +L AC +  A
Sbjct: 59  VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKA 118

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----------- 171
              G+ IH ++       +++ V T+LI MY K G  +DAR VFD+ +            
Sbjct: 119 FREGQQIHGHVLK-LGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIK 177

Query: 172 --------------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                               KDVV WN++I GYA  G  K+AL+LF EM +  +KP + T
Sbjct: 178 GYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDEST 237

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + +LSACA +  +  GR+  + + D++     ++    +++L  + G+VE A  L   +
Sbjct: 238 MVTVLSACAQSASIELGRQVHSWI-DDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGL 296

Query: 272 KIEPDSVLWGTLLGA 286
             + D + W TL+G 
Sbjct: 297 SYK-DVISWNTLIGG 310



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 34/217 (15%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + + ++++WN+M  G+A+      AL L+  M  + L P+  TF  LL ACA +  
Sbjct: 59  VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKA 118

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGC---------MVNLLSRAGQVEEAYKLVMDMKIEP 275
             EG++          I   V   GC         ++ +  + G+ E+A K V D     
Sbjct: 119 FREGQQ----------IHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARK-VFDQSSHR 167

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D V +  L+     +G I   +K+ + +  +++    ++  L + YA  GN+     +  
Sbjct: 168 DVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVV---SWNALISGYAETGNYKEALELFK 224

Query: 336 LMKEKGVQKEPGC-----------SSIELSNKVHEFL 361
            M +  V+ +              +SIEL  +VH ++
Sbjct: 225 EMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWI 261


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/438 (48%), Positives = 304/438 (69%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GE+  A  LF  +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 273 VNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE 332

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
           +PN+VT +++LSAC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG ++ A
Sbjct: 333 KPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 392

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD + ++ +  WN+MI G+AMHG    A  +F+ M +  ++P DITF+GLLSAC+H+
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F +M  +Y + PK+EHYGCM++L   +G  +EA K++  M++EPD V+W +
Sbjct: 453 GMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCS 512

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++HGN+ LGE  A+ LI     N G+YVLLSNIYA    W+ VA+ R L+ +KG+
Sbjct: 513 LLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGM 572

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 573 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 632

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RD
Sbjct: 633 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 692

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC DYW
Sbjct: 693 RTRFHHFRDGECSCNDYW 710



 Score =  211 bits (538), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 182/333 (54%), Gaps = 36/333 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF  D DLY+ TSL+ +Y + G +  A+K+      R +VS T ++T YA +G + +A 
Sbjct: 130 LKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAH 189

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN  I GYA+ G   EAL LF++M+   V P+E T V VLSAC Q G
Sbjct: 190 KMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSG 249

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I N      N+++  ALI++YSKCG L+ A  +F  +++KDV+ WN++I
Sbjct: 250 SIELGRQVHSWI-NDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLI 308

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF +M R   KP+D+T + +LSACAH G ++ GR            
Sbjct: 309 GGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 230 -----RFFNTMKDEYA----IEPKVEHYGCMVNL-----------LSRAGQVEEAYKLVM 269
                    ++ D YA    IE   + +  M+N             +  G+   A+ +  
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
            M+   IEPD + +  LL AC   G + LG  I
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHI 461



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 32/254 (12%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD ++E  ++ WN M  G+A       AL L+  M++  + PN  T   +L +C +  A
Sbjct: 59  VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118

Query: 123 LESGRWIHS--------------------YIENSR----------NIKVNVQVGTALINM 152
            + G+ +H                     Y++N R          +   +V   TALI  
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITG 178

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+  G ++ A  +FD +  KDVV WN+ I GYA  G  K+AL+LF +M +  ++P + T 
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +LSACA +G +  GR+  + + D +     ++    +++L S+ G++E A  L   + 
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWIND-HGFGXNLKIVNALIDLYSKCGELETACGLFQGLS 297

Query: 273 IEPDSVLWGTLLGA 286
              D + W TL+G 
Sbjct: 298 -NKDVISWNTLIGG 310



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 32/178 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           + TSL+D+YA+ GD+ +A+++F +M  RSL S   M+  +A                   
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFA------------------- 415

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG AN A  +F RM    +EP+++T V +LSAC   G L+ GR I  
Sbjct: 416 ------------MHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 463

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
            +     +   ++    +I++    G  K+A  + + +  + D V+W S++    MHG
Sbjct: 464 SMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHG 521



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 16/208 (7%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + +  +++WN+M  G+A+      AL+L+  M  + L P+  TF  LL +CA +  
Sbjct: 59  VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             EG++    +  ++  +  +  +  ++++  + G++E+A K V D     D V +  L+
Sbjct: 119 FKEGQQLHGQVL-KFGFDLDLYIHTSLISMYVQNGRLEDAQK-VXDKSSHRDVVSYTALI 176

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
                 G I    K+ + +  +++ +    +   + YA  GN+     +   M +  V+ 
Sbjct: 177 TGYASRGXIESAHKMFDEIPVKDVVSWNAXI---SGYAETGNYKEALELFKKMMKTNVRP 233

Query: 345 E--------PGCS---SIELSNKVHEFL 361
           +          C+   SIEL  +VH ++
Sbjct: 234 DESTMVTVLSACAQSGSIELGRQVHSWI 261


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/443 (48%), Positives = 302/443 (68%), Gaps = 1/443 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R+    T+++  YAK G+V  AR LFD+M+++DVV W+ MI GYAQ     EAL LF  
Sbjct: 254 RRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHE 313

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M    V PNEVT V+VL +C  +GA E+G+W+H YI+  + +K+ V +GT LI+ Y+KCG
Sbjct: 314 MQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKK-KKMKLTVTLGTQLIDFYAKCG 372

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  +  VF  ++ K+V  W ++I G A +G GK AL+ F+ M    +KP+D+TFIG+LS
Sbjct: 373 YIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLS 432

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+HA LV++GR  FN+M+ ++ IEP++EHYGCMV++L RAG +EEAY+ + +M   P++
Sbjct: 433 ACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNA 492

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
           V+W TLL +CR H NI + EK  E++     A+SG Y+LLSN YA +G  +   RVR+L+
Sbjct: 493 VVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLI 552

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           KEK ++K PGCS IEL   VHEF + D  H  SKEI+  L+++   +K  GYVP T    
Sbjct: 553 KEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDAR 612

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
            +  E+ K+ S+  HSEKLA+A+GLI T P T+I+I KNLR+C DCH   K IS+   R 
Sbjct: 613 LEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERM 672

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RDRNRFHHF +G CSC DYW
Sbjct: 673 IIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 139/229 (60%), Gaps = 5/229 (2%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAA 60
           S+  D +  +S++   +R   +   E++ A + +    S      T++  YA  G++  A
Sbjct: 116 SVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVA 175

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +FD M E+ +V WN M+ GY ++GL +E + LFR++L  ++E ++VT ++VL ACG++
Sbjct: 176 RHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRL 235

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             LE G  I  YI  S+ ++ N  + T+LI+MY+KCG +  AR +FD ++ +DVV W++M
Sbjct: 236 ANLEIGELIGEYIV-SKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAM 294

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           I GYA     K+AL LF+EM +  + P+++T + +L +CA  G    G+
Sbjct: 295 ISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGK 343



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 123/234 (52%), Gaps = 25/234 (10%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ +++ +   +NVMI G A     + AL+LF++M  + V+ ++ T  +VL AC ++ A
Sbjct: 77  IFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKA 136

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G  +H+ I  S   K N  V   LI MY+ CG +  AR VFD + ++ +V WNSM+ 
Sbjct: 137 LREGEQVHALILKS-GFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLS 195

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG-----------LVNEGRRF 231
           GY  +G   + ++LF ++  +R++  D+T I +L AC               +V++G R 
Sbjct: 196 GYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRR 255

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            NT+               ++++ ++ GQV+ A KL  +M  + D V W  ++ 
Sbjct: 256 NNTLTTS------------LIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMIS 296



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 92/212 (43%), Gaps = 34/212 (16%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ ++  +   +N MI G A      +AL LF +M    ++    TF  +L AC+    
Sbjct: 77  IFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKA 136

Query: 225 VNEGRRFF---------------NTMKDEYA---------------IEPKVEHYGCMVNL 254
           + EG +                 NT+   YA                E  +  +  M++ 
Sbjct: 137 LREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSG 196

Query: 255 LSRAGQVEEAYKL---VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
            ++ G  +E  KL   +++++IE D V   ++L AC    N+ +GE I EY++S+ L  +
Sbjct: 197 YTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRN 256

Query: 312 GTYVL-LSNIYAAIGNWDGVARVRTLMKEKGV 342
            T    L ++YA  G  D   ++   M ++ V
Sbjct: 257 NTLTTSLIDMYAKCGQVDTARKLFDEMDKRDV 288


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/480 (45%), Positives = 316/480 (65%), Gaps = 2/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V++    D +V + ++ +YA  GDV S+   FA +    +V +T M+   A  G+V AA
Sbjct: 140 AVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAA 199

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R LFD M ++D V W+ MI GY   G + EAL+LF  ML+      E T V+VL+AC QI
Sbjct: 200 RDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQI 259

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G L+ G+W+H Y+  SR +++++++GTAL++MYSKCG++  A  VF+ + +++V  W S 
Sbjct: 260 GTLDRGKWVHWYVR-SRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSA 318

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + G AM+G G + LQLF  M    ++P+ ++F+ +L  C+ AGLV+EGR  F++M D+Y 
Sbjct: 319 VSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYG 377

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           ++P  EHYGCMV+L  RAG++++A   + DM +EP   +WG LL A R+H ++ LG+   
Sbjct: 378 VDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYAL 437

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L++    N   +V LSNIYA   NW GV+RVR +MK KGV+K PG S+IE+  KVHEF
Sbjct: 438 DKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEF 497

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             G   HP+  EI +ML E++  L+ +GY   T+ VL DI E++K+ ++ +HSEKLA+AF
Sbjct: 498 YVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAF 557

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI       I+IVKNLRVC DCH   KL+SK   R+I+MRDRNRFHHF  G CSC DYW
Sbjct: 558 GLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 302/434 (69%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  G +  A V+FD+M E D   W+ M+ GYAQ+G A EAL LFR M AE V  +
Sbjct: 148 LIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSD 207

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +V+  CG +GAL+ G+W+HSY++    +K++V +GTAL+ MYSKCGSL +A  VF
Sbjct: 208 AFTLASVVGVCGDLGALDLGKWVHSYMDK-EGVKIDVVLGTALVGMYSKCGSLDNALKVF 266

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + ++DV  W++MI GYA+HG G+ ALQLF+ M R +  P+ +TF  +LSAC+H+GLV 
Sbjct: 267 QGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVE 326

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G + F TM  EY I P+++HYGCMV+L  RAG V  A+K +  M IEP+ VLW TLLGA
Sbjct: 327 KGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGA 386

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C+ HG   LGE I+  ++  + ++   YVL+SN+YA++G W  V +VR+LMK+K  +K+ 
Sbjct: 387 CKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQH 446

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G SSIE++  VH+F+ GD  HP+ ++IY ML ++   LK  G+V  T  VLHDI E++K+
Sbjct: 447 GWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKE 506

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
            +L +HSE+LA+A+GL+ T  G+ I+IVKNLRVC DCH V KLIS+   R+I++RDR RF
Sbjct: 507 YALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRF 566

Query: 467 HHFVNGTCSCGDYW 480
           HHF    CSC DYW
Sbjct: 567 HHFRERGCSCNDYW 580



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 14/248 (5%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G VA A  +F      ++  WN +I GY+       A+ L+R M    + PN  T   VL
Sbjct: 55  GHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVL 114

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN----MYSKCGSLKDARLVFDRVN 170
            AC ++  L  G+ +HS I     +KV +   T L+N    +Y+ CG +  A ++FD + 
Sbjct: 115 KACCKLLRLCEGQELHSQI-----VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMP 169

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           + D   W++M+ GYA +G   +AL+LF EM    +     T   ++  C   G ++ G +
Sbjct: 170 EPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG-K 228

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
           + ++  D+  ++  V     +V + S+ G ++ A K+   M  E D   W T++    +H
Sbjct: 229 WVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIH 287

Query: 291 GNIALGEK 298
           G+   GEK
Sbjct: 288 GH---GEK 292



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 1/146 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K G +  A  +F  M E+DV  W+ MI GYA HG   +AL LF  M   K  
Sbjct: 247 TALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTI 306

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           PN VT  +VLSAC   G +E G  I   +     I   ++    +++++ + G +  A +
Sbjct: 307 PNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHK 366

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGF 189
            +     + +VV+W +++     HG+
Sbjct: 367 FIQTMPIEPNVVLWRTLLGACKTHGY 392


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/480 (45%), Positives = 316/480 (65%), Gaps = 2/480 (0%)

Query: 1    TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
             V++    D +V + ++ +YA  GDV S+   FA +    +V +T M+   A  G+V AA
Sbjct: 1345 AVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAA 1404

Query: 61   RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            R LFD M ++D V W+ MI GY   G + EAL+LF  ML+      E T V+VL+AC QI
Sbjct: 1405 RDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQI 1464

Query: 121  GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            G L+ G+W+H Y+  SR +++++++GTAL++MYSKCG++  A  VF+ + +++V  W S 
Sbjct: 1465 GTLDRGKWVHWYV-RSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSA 1523

Query: 181  IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
            + G AM+G G + LQLF  M    ++P+ ++F+ +L  C+ AGLV+EGR  F++M D+Y 
Sbjct: 1524 VSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYG 1582

Query: 241  IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
            ++P  EHYGCMV+L  RAG++++A   + DM +EP   +WG LL A R+H ++ LG+   
Sbjct: 1583 VDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYAL 1642

Query: 301  EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
            + L++    N   +V LSNIYA   NW GV+RVR +MK KGV+K PG S+IE+  KVHEF
Sbjct: 1643 DKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEF 1702

Query: 361  LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
              G   HP+  EI +ML E++  L+ +GY   T+ VL DI E++K+ ++ +HSEKLA+AF
Sbjct: 1703 YVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAF 1762

Query: 421  GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            GLI       I+IVKNLRVC DCH   KL+SK   R+I+MRDRNRFHHF  G CSC DYW
Sbjct: 1763 GLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/480 (46%), Positives = 324/480 (67%), Gaps = 5/480 (1%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAA 60
           S+  D +    L    A+  DV   E + + + +    SL     +++  Y+  G + +A
Sbjct: 131 SILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSA 190

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +F+ M  +D V WN +I+G+A +G+ NEAL L+R M +E VEP+  T V++LSAC ++
Sbjct: 191 YQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVEL 250

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL  G  +H Y+     ++ N     AL+++YSKCG+ +DA+ VFD + ++ VV W S+
Sbjct: 251 GALALGERVHMYMVKVGLVQ-NQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           IVG A++G G +AL+LF E+ R  LKPS+ITF+G+L AC+H G+++EG  +F  MK+EY 
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYG 369

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P++EH+GCMV+LL RAG+V +AY  + +M + P++V+W TLLGAC +HG++ LGE   
Sbjct: 370 ILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVAR 429

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             +      +SG +VLLSN+YA+   W  V  VR +M  KGV+K PG S +EL N+V+EF
Sbjct: 430 AEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEF 489

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP+S+E Y ML +I   LK EGYVP+T  VL DI E++K+ +L  H+EK+A+AF
Sbjct: 490 IMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAF 549

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L++T PGT I+I+KNLRVC DCH   KLISK   R+I++RDR+RFHHF +G+CSC DYW
Sbjct: 550 MLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 131/254 (51%), Gaps = 15/254 (5%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM- 98
           +LVSL+  ++  A+         +F+ ++  ++  WN MI G+A+    + A+ LF +M 
Sbjct: 77  ALVSLSAPMSFAAQ---------IFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMH 127

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSKCG 157
            A  + P+  T   +  A  ++  +  G  IHS +   RN   +++ V  +L++MYS  G
Sbjct: 128 AASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVV--VRNGFDSLRFVQNSLVHMYSVLG 185

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           SL  A  VF+ ++ +D V WNS+I G+A++G   +AL L+ EM    ++P   T + LLS
Sbjct: 186 SLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLS 245

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC   G +  G R    M     ++ +      +++L S+ G   +A K+  +M+ E   
Sbjct: 246 ACVELGALALGERVHMYMVKVGLVQNQ-HASNALLDLYSKCGNFRDAQKVFDEME-ERSV 303

Query: 278 VLWGTLLGACRLHG 291
           V W +L+    ++G
Sbjct: 304 VSWTSLIVGLAVNG 317



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 38/191 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L ++ + S +L+DLY++ G+   A+K+F  M +RS+VS                  
Sbjct: 264 VKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVS------------------ 305

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W  +I G A +GL NEAL LF  +  + ++P+E+T V VL AC   G
Sbjct: 306 -------------WTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCG 352

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV----VVW 177
            L+ G      ++    I   ++    ++++  + G + DA   +D + +  V    V+W
Sbjct: 353 MLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA---YDYIRNMPVPPNAVIW 409

Query: 178 NSMIVGYAMHG 188
            +++    +HG
Sbjct: 410 RTLLGACTIHG 420



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 38/241 (15%)

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           +N   N  +  AL+++      +  A  +F+++   ++  WN+MI G+A       A++L
Sbjct: 66  QNPDFNKHLIFALVSL---SAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122

Query: 197 FNEM-CRIRLKPSDITFIGLLSACA-----------HAGLVNEG----RRFFNTMKDEYA 240
           F++M     + P   TF  L  A A           H+ +V  G    R   N++   Y+
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS 182

Query: 241 IEPKVEH---------------YGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGT 282
           +   +                 +  ++N  +  G   EA  L  +M    +EPD     +
Sbjct: 183 VLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVS 242

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           LL AC   G +ALGE++  Y++   L  N      L ++Y+  GN+    +V   M+E+ 
Sbjct: 243 LLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS 302

Query: 342 V 342
           V
Sbjct: 303 V 303


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/447 (48%), Positives = 310/447 (69%), Gaps = 6/447 (1%)

Query: 38  QRSLVSLTTMLTCYAKQG--EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
           +R+   + TML  YAK G  ++  AR +FD ME +DVV WN MI  YAQ+G++ EA+ L+
Sbjct: 229 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLY 287

Query: 96  RRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
            +ML     ++ N V   AVL AC   GA+++G+ IH+ +     ++ NV VGT++++MY
Sbjct: 288 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYVGTSIVDMY 346

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           SKCG ++ A   F ++ +K+++ W++MI GY MHG G++AL++F EM R  L+P+ ITFI
Sbjct: 347 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 406

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L+AC+HAGL++EGR ++N MK E+ IE  VEHYGCMV+LL RAG ++EAY L+ +MK+
Sbjct: 407 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 466

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
           +PD+ +WG LL ACR+H N+ L E   + L   + +NSG YVLLSNIYA    W  V R+
Sbjct: 467 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERI 526

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           R L+K + ++K PG SS EL  K++ F  GD  HP+  EIY  LE++   ++  GYVP T
Sbjct: 527 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 586

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VLHD+ E++K+++L +HSEKLAVAF L+++ P + I I+KNLRVC DCH   K I+K 
Sbjct: 587 GSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 646

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T R+I++RD  RFHHF +G CSC DYW
Sbjct: 647 TEREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 14/266 (5%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           LF + P     S + +L  Y        AR  FD++ + + V    M  GY ++ L   +
Sbjct: 124 LFPSDP----YSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHS 179

Query: 92  LVLFRRMLAEKVEP--NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           L LFR M+A       +E  A+   SA  ++        +H+ I      + N  V   +
Sbjct: 180 LELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKI-GFERNAGVVNTM 238

Query: 150 INMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RL 205
           ++ Y+K GS  L+ AR VFD + ++DVV WNSMI  YA +G   +A+ L+++M  +   +
Sbjct: 239 LDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGI 297

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           K + +    +L ACAHAG +  G+R  N +     +E  V     +V++ S+ G+VE A 
Sbjct: 298 KCNAVALSAVLLACAHAGAIQTGKRIHNQVV-RMGLEENVYVGTSIVDMYSKCGRVEMAS 356

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHG 291
           +    +K E + + W  ++    +HG
Sbjct: 357 RAFRKIK-EKNILSWSAMITGYGMHG 381



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  L++++YV TS+VD+Y++ G V  A + F  + +++++S + M+T            
Sbjct: 328 VRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMIT------------ 375

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              GY  HG   EAL +F  M    + PN +T ++VL+AC   G
Sbjct: 376 -------------------GYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG 416

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSM 180
            L+ GR+ ++ ++    I+  V+    ++++  + G L +A  +   +  K D  +W ++
Sbjct: 417 LLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGAL 476

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 477 LSACRIH 483



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 43/238 (18%)

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM----- 200
            +AL++MY  C    DAR  FD + D + V+  +M  GY  +     +L+LF  M     
Sbjct: 132 ASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDS 191

Query: 201 --------CRIRLKPSDITFIGLLSACAHAGLVNEGRR----FFNTMKDEYA-------- 240
                     +    S       ++A  HA +   G        NTM D YA        
Sbjct: 192 ASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLE 251

Query: 241 --------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-----KIEPDSVLWGTLLGAC 287
                   +E  V  +  M+ L ++ G   EA  L   M      I+ ++V    +L AC
Sbjct: 252 VARKVFDTMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLAC 311

Query: 288 RLHGNIALGEKIAEYLISQNLANS---GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              G I  G++I   ++   L  +   GT ++  ++Y+  G  +  +R    +KEK +
Sbjct: 312 AHAGAIQTGKRIHNQVVRMGLEENVYVGTSIV--DMYSKCGRVEMASRAFRKIKEKNI 367


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/438 (49%), Positives = 299/438 (68%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K G+V  A  LF+ +  KDVV WN +I GY    L  EAL+LF+ ML    
Sbjct: 236 VNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE 295

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
            PN+VT V++L AC  +GA++ GRWIH YI+   +++     + T+LI+MY+KCG ++ A
Sbjct: 296 SPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAA 355

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  K +  WN+MI G+AMHG       LF+ M +  ++P DITF+GLLSAC+H+
Sbjct: 356 HQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHS 415

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G ++ GR  F +M  +Y I PK+EHYGCM++LL  +G  +EA +++  M +EPD V+W +
Sbjct: 416 GKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCS 475

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACR HGN+ L E  A  L+     N G+YVLLSNIYA  G WD VA+VR L+  KG+
Sbjct: 476 LLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGM 535

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ ++VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 536 KKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEE 595

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KL+SK   R+I+ RD
Sbjct: 596 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARD 655

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC D+W
Sbjct: 656 RTRFHHFRDGVCSCNDFW 673



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  ++E + + WN M+ GYA       AL L+  M++  + PN  T   +L +C +  A
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----------- 171
            E G+ IH ++      + ++ V T+LI+MY++ G L+DA  VFDR +            
Sbjct: 82  FEEGQQIHGHVLK-LGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140

Query: 172 --------------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                               KDVV WN+MI GYA  G  K+AL+LF EM +  ++P + T
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGT 200

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + +LSACA +  V  GR+  + + D++     ++    +++L S+ GQVE A  L   +
Sbjct: 201 MVTVLSACAQSRSVELGRQVHSWI-DDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGL 259

Query: 272 KIEPDSVLWGTLLGA 286
             + D V W TL+G 
Sbjct: 260 SCK-DVVSWNTLIGG 273



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 32/176 (18%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TSL+D+YA+ GD+ +A ++F +M  +SL S   M                          
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAM-------------------------- 373

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
                I G+A HG AN    LF RM    +EP+++T V +LSAC   G L+ GR I   +
Sbjct: 374 -----IFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSM 428

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
               +I   ++    +I++    G  K+A+ +   +  + D V+W S++     HG
Sbjct: 429 TQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG 484



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 104/209 (49%), Gaps = 18/209 (8%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  + + + ++WN+M+ GYA+      AL+L+  M  + L P+  TF  LL +CA +  
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG++   + +K  Y  EP +  +  ++++ ++ G++E+A+K V D     D V +  L
Sbjct: 82  FEEGQQIHGHVLKLGY--EPDLYVHTSLISMYAQNGRLEDAHK-VFDRSSHRDVVSYTAL 138

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +      GNI   +++ + +  +++ +    +   + YA  G++     +   M +  V+
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMI---SGYAETGSYKEALELFKEMMKTNVR 195

Query: 344 KEPG--------CS---SIELSNKVHEFL 361
            + G        C+   S+EL  +VH ++
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWI 224


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/481 (45%), Positives = 317/481 (65%), Gaps = 2/481 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAA 59
            +K    KD++V  +L+ LY     V SA+++F  +P  R +VS  +M+  + + G+++ 
Sbjct: 159 VIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISV 218

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A+ LF +M EKDV+ W  +I G  Q+G   +AL  F+ +  +K+ PNE   V++L+A  Q
Sbjct: 219 AQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQ 278

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+ IHS I NS    +   +GTAL++MY+KCG + ++R +FDR+ +KD   WN 
Sbjct: 279 LGTLEYGKRIHS-IANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNV 337

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G++AL LF +       P ++TFIG+L+AC+ AGLV+EG+ FF  M D Y
Sbjct: 338 MICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTY 397

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IEP++EHYGCMV+LLSRAG V +A +++  M   PD VLW ++LG+C++HG I LGE+I
Sbjct: 398 GIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEI 457

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  +  ++G YV L+ I+A +  W+ V++VR LM E+   K  G S IE   +VH 
Sbjct: 458 GNKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHR 517

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGD  H ++ EIY MLE +   + A GY      VLHDI E++K+N+++ HSE+LA+A
Sbjct: 518 FVAGDKEHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIA 577

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FGL+ T+ G  I+I+KNLRVC DCH V K+IS    R+I++RD +RFHHF  G CSC DY
Sbjct: 578 FGLLVTKDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDY 637

Query: 480 W 480
           W
Sbjct: 638 W 638



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 40/274 (14%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIG 121
           +++ +    V   N MI  + +  L   ++ L+  M    V  PN+ T   VL AC    
Sbjct: 88  IYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAF 147

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSM 180
           A+  G  + +++     +K +V V  ALI++Y  C  ++ A+ VFD V + +DVV WNSM
Sbjct: 148 AIREGAQVQTHVIKLGFVK-DVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSM 206

Query: 181 IVGY-------------------------------AMHGFGKDALQLFNEMCRIRLKPSD 209
           IVG+                                 +G  + AL  F E+   +L+P++
Sbjct: 207 IVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNE 266

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
              + LL+A A  G +  G+R  +++ +             +V++ ++ G ++E+ + + 
Sbjct: 267 AILVSLLAAAAQLGTLEYGKR-IHSIANSLRFPMTASLGTALVDMYAKCGCIDES-RFLF 324

Query: 270 DMKIEPDSVLWGTLLGACRLHG----NIALGEKI 299
           D   E D   W  ++     HG     +AL EK 
Sbjct: 325 DRMPEKDKWSWNVMICGLATHGLGQEALALFEKF 358


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 297/436 (68%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y     V+ AR +FD++ ++++V WN +I GY  + +  + + +FR M     +
Sbjct: 181 TALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAK 240

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P EVT V VL AC  +GAL  GRWI  YI+++R +++NV VGTALI+MY+KCG + +A  
Sbjct: 241 PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNR-LRLNVFVGTALIDMYAKCGVVDEAEK 299

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +  K+V  WN +I GYAM+G G+ ALQ F+ M   + KP ++TF+G+L AC H GL
Sbjct: 300 IFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGL 359

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           VNEGR +F +MK+E+ + P++EHYGCMV+LL RAG ++EA +L+  M ++PD ++W  LL
Sbjct: 360 VNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELL 419

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+HGNI LGE   + L+     N   YVLL+N+YA    WD V  VR +M  + V+K
Sbjct: 420 GACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRK 479

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCSSIE+ N V+EF+  +   P  +E+Y +L ++N  LK  GYV  T +  +DI E++
Sbjct: 480 VPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEE 539

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K++SL  HSEKLA+AFGL+ +  G +++IVKNLR+C DCH  FK++SK   R I +RDRN
Sbjct: 540 KEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRN 599

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHFV G CSC DYW
Sbjct: 600 RFHHFVGGACSCKDYW 615



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 3/216 (1%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N MI  Y        ++ ++ +M    + P+  T   VL +  Q+   E G+ IH  I  
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
               + NV V TAL+NMY  C S+ DAR VFD + D+++V WN++I GY  +   +  + 
Sbjct: 171 -MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           +F EM     KP ++T +G+L ACAH G +N+G R+ +   D   +   V     ++++ 
Sbjct: 230 VFREMQIAGAKPVEVTMVGVLLACAHLGALNQG-RWIDDYIDHNRLRLNVFVGTALIDMY 288

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ G V+EA K+   M+++ +   W  L+    ++G
Sbjct: 289 AKCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNG 323



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 32/181 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +++V T+L+D+YA+ G V  AEK+F  M                        RV      
Sbjct: 277 NVFVGTALIDMYAKCGVVDEAEKIFKAM------------------------RV------ 306

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            K+V  WNV+I GYA +G    AL  F RM+ EK +P+EVT + VL AC   G +  GR 
Sbjct: 307 -KNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRT 365

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
             + ++    ++  ++    ++++  + G L +A+ +   ++   D ++W  ++    +H
Sbjct: 366 YFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIH 425

Query: 188 G 188
           G
Sbjct: 426 G 426


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/480 (44%), Positives = 319/480 (66%), Gaps = 2/480 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+F    D+YV  SLV +YA  G + +A ++F  MP R +VS T+M+  Y K G V  AR
Sbjct: 146 VRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAR 205

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M  +++  W++MI+GYA++    +A+ LF  M  E V  NE   V+V+S+C  +G
Sbjct: 206 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLG 265

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G   H Y+  S ++ VN+ +GTAL++MY +CG ++ A  VF+ + DKD + W+S+I
Sbjct: 266 ALEFGERAHEYVVKS-HMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSII 324

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A+HG    A+  F++M R+   P DIT   +LSAC+H GLV++G   +  MK +Y I
Sbjct: 325 KGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGI 384

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGC+V++L RAG++ EA   ++ M ++P++ + G LLGAC+++ N  + E++  
Sbjct: 385 EPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGN 444

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     +SG YVLLSNIYA  G W+ +  +R +MKEK V+K PG S IE+  K+++F 
Sbjct: 445 MLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFS 504

Query: 362 AG-DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
            G D +HP+  +I  + EEI G ++  GY   T     D+ E++K+ ++ +HSEKLA+A+
Sbjct: 505 MGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAY 564

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G++ T+ GT+I+IVKNLRVC DCH   KLIS+  GR+ ++RDRNRFHHF NG CSC DYW
Sbjct: 565 GMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F ++ + ++ V+N +I  ++       A   + +M + R+ P +ITF  L+ A      
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V  G +  + +   +  +  V     +V++ +  G +  A ++   M    D V W +++
Sbjct: 135 VVVGEQTHSQIV-RFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFR-DVVSWTSMV 192

Query: 285 -GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            G C+  G +    ++ + +  +NL    T+ ++ N YA    ++    +  LMK +GV
Sbjct: 193 AGYCKC-GMVEDAREMFDEMPHRNLF---TWSIMINGYAKNNCFEKAIDLFELMKREGV 247


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 315/479 (65%), Gaps = 33/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +++  D ++YVS +++D+YAR                           C+     +  A+
Sbjct: 145 LRYGYDSNVYVSCAILDMYAR---------------------------CH----HLEEAQ 173

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++FD M  K+ V WN +I GYA+ G  ++A  LF  ML E V+P   T  +VL AC  +G
Sbjct: 174 LIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMG 233

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +LE G+W+H+ +      K+   VG  L++MY+K GS++DA+ VFDR+  +DVV WNSM+
Sbjct: 234 SLEQGKWVHALMIKWGE-KLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSML 292

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY+ HG GK ALQ F EM R R+ P+DITF+ +L+AC+HAGL++EGR +F+ MK +Y +
Sbjct: 293 TGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK-KYNV 351

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++ HY  MV+LL RAG ++ A + + +M I+P + +WG LLGACR+H N+ LG   AE
Sbjct: 352 EPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAE 411

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +   +    GT+VLL NIYA  G W+  A+VR +MKE GV+KEP CS +E+ N+VH F+
Sbjct: 412 CIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFV 471

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           A D  HP+ +EI+ M E+I+  +K  GYVP +  VL  + +++++  L+ HSEKLA+AF 
Sbjct: 472 ADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFA 531

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T PG++I+I KN+R+C DCH+ FK +SK   R+I++RD NRFHHF +G CSC DYW
Sbjct: 532 LLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 10/310 (3%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV   T+L  YAK G++  AR LFD+M  +DVV W  +I GY+QH    +AL+L   ML 
Sbjct: 50  LVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLR 109

Query: 101 EKVEPNEVTAVAVLSACGQIGALE--SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             ++PN+ T  ++L A   +G+ +   GR +H           NV V  A+++MY++C  
Sbjct: 110 IGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRY-GYDSNVYVSCAILDMYARCHH 168

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L++A+L+FD +  K+ V WN++I GYA  G G  A  LF+ M R  +KP+  T+  +L A
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           CA  G + +G ++ + +  ++  E  V   G  ++++ +++G +E+A K V D   + D 
Sbjct: 229 CASMGSLEQG-KWVHALMIKWG-EKLVAFVGNTLLDMYAKSGSIEDAKK-VFDRLAKRDV 285

Query: 278 VLWGTLLGACRLH--GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           V W ++L     H  G +AL ++  E L ++   N  T++ +    +  G  D       
Sbjct: 286 VSWNSMLTGYSQHGLGKVAL-QRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFD 344

Query: 336 LMKEKGVQKE 345
           +MK+  V+ +
Sbjct: 345 MMKKYNVEPQ 354



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 5/175 (2%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C  +  L  G+ IH+ + NSR  + ++ +   L+N+Y+KCG L  AR +FD ++ +
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSR-FRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--EGRR 230
           DVV W ++I GY+ H   +DAL L  EM RI LKP+  T   LL A +  G  +  +GR+
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             + +   Y  +  V     ++++ +R   +EEA +L+ D+ +  + V W  L+ 
Sbjct: 140 -LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEA-QLIFDVMVSKNEVSWNALIA 192


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/477 (45%), Positives = 321/477 (67%), Gaps = 2/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
              DLYV+ +++D+Y + G +  A  +F  MP+R ++S T ++  Y + G++ AAR LFD
Sbjct: 141 FSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFD 200

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            +  KD+V W  M+ GYAQ+ +  +AL +FRR+  E VE +EVT V V+SAC Q+GA + 
Sbjct: 201 GLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKY 260

Query: 126 GRWIHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
             WI    E+S   +  NV VG+ALI+MYSKCG++++A  VF  + +++V  ++SMIVG+
Sbjct: 261 ANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGF 320

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A+HG  + A++LF +M    +KP+ +TF+G+L+AC+HAGLV++G++ F +M+  Y + P 
Sbjct: 321 AIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPT 380

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            E Y CM +LLSRAG +E+A +LV  M +E D  +WG LLGA  +HGN  + E  ++ L 
Sbjct: 381 AELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLF 440

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN-KVHEFLAG 363
                N G Y+LLSN YA+ G WD V++VR L++EK ++K PG S +E  N  +H+F+AG
Sbjct: 441 ELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAG 500

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D+ HPK  EI   L ++   LK  GY P    + + I +++K+  L  HSEKLA+AFGL+
Sbjct: 501 DVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLL 560

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ST  G++IKI+KNLR+C DCH V    SK TGRKI++RD  RFHHF+NG CSC ++W
Sbjct: 561 STDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 41/267 (15%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R+LF  +   +   W  +I  YA  G  ++AL  +  M   +V P   T  A+ SAC  +
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD------------- 167
                G  +H+          ++ V  A+I+MY KCGSL+ AR+VFD             
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 168 -----RVND-------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
                R+ D             KD+V W +M+ GYA +    DAL++F  +    ++  +
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKD-----EYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           +T +G++SACA  G      ++ N ++D      + +   V     ++++ S+ G VEEA
Sbjct: 243 VTLVGVISACAQLG----ASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEA 298

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHG 291
           Y +   M+ E +   + +++    +HG
Sbjct: 299 YDVFKGMR-ERNVFSYSSMIVGFAIHG 324



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 34/215 (15%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F +  ++ V ++L+D+Y++ G+V  A  +F  M +R++ S ++M+  +A  G   AA  L
Sbjct: 273 FGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKL 332

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F DM E                                 V+PN VT V VL+AC   G +
Sbjct: 333 FYDMLETG-------------------------------VKPNHVTFVGVLTACSHAGLV 361

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           + G+ + + +E    +    ++   + ++ S+ G L+ A +LV     + D  VW +++ 
Sbjct: 362 DQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLG 421

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              +HG   D  ++ ++     L+P +I    LLS
Sbjct: 422 ASHVHG-NPDVAEIASKRL-FELEPDNIGNYLLLS 454


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/447 (48%), Positives = 310/447 (69%), Gaps = 6/447 (1%)

Query: 38  QRSLVSLTTMLTCYAKQG--EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
           +R+   + TML  YAK G  ++  AR +FD ME +DVV WN MI  YAQ+G++ EA+ L+
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 96  RRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
            +ML     ++ N V   AVL AC   GA+++G+ IH+ +     ++ NV VGT++++MY
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR-MGLEENVYVGTSIVDMY 347

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           SKCG ++ A   F ++ +K+++ W++MI GY MHG G++AL++F EM R  L+P+ ITFI
Sbjct: 348 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 407

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L+AC+HAGL++EGR ++N MK E+ IE  VEHYGCMV+LL RAG ++EAY L+ +MK+
Sbjct: 408 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 467

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
           +PD+ +WG LL ACR+H N+ L E   + L   + +NSG YVLLSNIYA    W  V R+
Sbjct: 468 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERI 527

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           R L+K + ++K PG SS EL  K++ F  GD  HP+  EIY  LE++   ++  GYVP T
Sbjct: 528 RLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNT 587

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VLHD+ E++K+++L +HSEKLAVAF L+++ P + I I+KNLRVC DCH   K I+K 
Sbjct: 588 GSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKI 647

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T R+I++RD  RFHHF +G CSC DYW
Sbjct: 648 TEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 10/217 (4%)

Query: 81  GYAQHGLANEALVLFRRMLAEKVEP--NEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           GY ++ L   +L LFR M+A       +E  A+   SA  ++        +H+ I     
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKI-G 228

Query: 139 IKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
            + N  V   +++ Y+K GS  L+ AR VFD + ++DVV WNSMI  YA +G   +A+ L
Sbjct: 229 FERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGL 287

Query: 197 FNEMCRI--RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
           +++M  +   +K + +    +L ACAHAG +  G+R  N +     +E  V     +V++
Sbjct: 288 YSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVV-RMGLEENVYVGTSIVDM 346

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            S+ G+VE A +    +K E + + W  ++    +HG
Sbjct: 347 YSKCGRVEMASRAFRKIK-EKNILSWSAMITGYGMHG 382



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  L++++YV TS+VD+Y++ G V  A + F  + +++++S + M+T            
Sbjct: 329 VRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMIT------------ 376

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              GY  HG   EAL +F  M    + PN +T ++VL+AC   G
Sbjct: 377 -------------------GYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG 417

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSM 180
            L+ GR+ ++ ++    I+  V+    ++++  + G L +A  +   +  K D  +W ++
Sbjct: 418 LLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGAL 477

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 478 LSACRIH 484


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/437 (47%), Positives = 299/437 (68%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           + ++  YAK G++  AR +FD + +KDV  W+ +I GY ++  + EAL LFR +     +
Sbjct: 219 SALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNEVT +AV+SAC Q+G LE+GRW+H YI  ++    +V +  +LI+M+SKCG +  A+
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH-SVSLNNSLIDMFSKCGDIDAAK 337

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD ++ KD++ WNSM+ G A+HG G++AL  F+ M    L+P +ITFIG+L+AC+HAG
Sbjct: 338 RIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAG 397

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG++ F  ++  Y +  K EHYGCMV+LL RAG + EA + +  M ++PD  +WG++
Sbjct: 398 LVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSM 457

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR++ N+ LGE+ A  L+     N G Y+LLSNIYA    W+ V +VR LM EKG+Q
Sbjct: 458 LGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQ 517

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCSS+ + N  H FLAGD  HP+  EI +ML ++   LK  GYV  T  VL +I + 
Sbjct: 518 KTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDN 577

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ S+  HSEKLA+ +GL+ ++ G  I I+KNLRVC DCH + KL+SK   R+I +RDR
Sbjct: 578 KKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDR 637

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G+CSC DYW
Sbjct: 638 NRFHHFKDGSCSCRDYW 654



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 156/269 (57%), Gaps = 16/269 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT+L  YA  G++ +AR LF+ M  ++ V W  MI GY ++   NEAL+L+++M  +   
Sbjct: 118 TTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS 177

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+EVT   ++SAC ++  L  G  +HS+I    ++K+   +G+AL+NMY+KCG LK AR 
Sbjct: 178 PDEVTMATLVSACAELKDLGVGMKLHSHIR-EMDMKICAVLGSALVNMYAKCGDLKTARQ 236

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           VFD+++DKDV  W+++I GY  +    +ALQLF E+     ++P+++T + ++SACA  G
Sbjct: 237 VFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLG 296

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
            +  GR        +Y    +  H       ++++ S+ G ++ A K + D     D + 
Sbjct: 297 DLETGRWVH-----DYITRTQKGHSVSLNNSLIDMFSKCGDIDAA-KRIFDSMSYKDLIS 350

Query: 280 WGTLLGACRLHGNIALG-EKIAEYLISQN 307
           W +++    LHG   LG E +A++ + Q 
Sbjct: 351 WNSMVNGLALHG---LGREALAQFHLMQT 376



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 4/229 (1%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLS 115
           V  A  +F      DV+ WN M+  +    +   AL  +  ML      P+  T  ++L 
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
            C  +   + G+ +H  +     +  ++ + T L+NMY+ CG LK AR +F+R+  ++ V
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYM-LHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKV 146

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
           VW SMI GY  +    +AL L+ +M      P ++T   L+SACA    +  G +  + +
Sbjct: 147 VWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI 206

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + E  ++        +VN+ ++ G ++ A + V D   + D   W  L+
Sbjct: 207 R-EMDMKICAVLGSALVNMYAKCGDLKTA-RQVFDQLSDKDVYAWSALI 253


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/508 (45%), Positives = 321/508 (63%), Gaps = 34/508 (6%)

Query: 6   LDKDLYVSTSLVDLYA-------------------------------RGGDVLSAEKLFA 34
           LD  L+V T+LV +Y+                               R GDV  A+ +F 
Sbjct: 137 LDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFN 196

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
            MP R+L S   ML  Y K GE+  AR LF +M  KD V W+ MI G+A +G   EA   
Sbjct: 197 RMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGF 256

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           FR +    + PNEV+    LSAC   GA+E G+ +H +IE S  + + V V  AL++ YS
Sbjct: 257 FRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWM-VSVNNALLDTYS 315

Query: 155 KCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           KCG++  ARLVF+R+ +K  +V W SMI G AMHG+G++A+QLF+EM    ++P  I FI
Sbjct: 316 KCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFI 375

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L AC+HAGL+ +G  +F  MKD Y IEP +EHYGCMV+L  RAGQ+++AY+ ++ M +
Sbjct: 376 SILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPV 435

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
            P +++W TLLGAC +HGN+ L E++ E L   +  NSG +VLLSNIYA  G W  VA V
Sbjct: 436 LPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAV 495

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG-YVPQ 392
           R  M ++ + K PG S IE+   ++ F+AG++++  ++E Y  L+EI   L+ EG Y+P+
Sbjct: 496 RRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPE 555

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
              VLHDI +++K++S+  HSEKLAVAFG+     G+ I+IVKNLRVC DCH V KLISK
Sbjct: 556 VGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISK 615

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             G +I++RDR+RFH F  G+CSC DYW
Sbjct: 616 VYGLEIVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 4/191 (2%)

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALIN-MYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           +L++ + +H+Y+  +      +  G  L++   S   +L  AR +F    + DV + N++
Sbjct: 17  SLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTL 76

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I G A     +++L  F EM R    P D  +F  LL A A    +  G +  +     +
Sbjct: 77  IRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQL-HCQAIVH 135

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            ++  +     +V++ S  G V  A K+  +M  EP+ V W  ++ AC   G++   + +
Sbjct: 136 GLDTHLFVGTTLVSMYSECGFVAFAKKVFEEM-FEPNVVAWNAVVTACFRCGDVKGADMM 194

Query: 300 AEYLISQNLAN 310
              +  +NL +
Sbjct: 195 FNRMPFRNLTS 205


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/479 (43%), Positives = 311/479 (64%), Gaps = 2/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK     + YV  +L+ +Y +  ++    ++F  M  +  VS  + +    +   +  AR
Sbjct: 445 VKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDAR 504

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M  +DVV W  +I  YAQ    +EA+  F+ ML E  +PN      +LS CG +G
Sbjct: 505 HIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLG 564

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           + + G+ IH+ +     +   + V  AL++MY KCG   D+  VFD + ++D+  WN+ I
Sbjct: 565 SAKLGQQIHT-VAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSMEERDIFTWNTFI 622

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A HG G++A++++  M  + + P+++TF+GLL+AC+HAGLV+EG +FF +M  +Y +
Sbjct: 623 TGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGL 682

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P +EHY CMV+LL R G V+ A K + DM IEPD+V+W  LLGAC++H N  +G + AE
Sbjct: 683 TPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAE 742

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L +   +N+G YV+LSNIY+++G W  VA +R +MK++GV KEPGCS +++ NKVH F+
Sbjct: 743 KLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFV 802

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD +H K +EI   L+++   L+  GYVP T+ VLHDI E+QK++SL  HSEKLAVA+G
Sbjct: 803 TGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYG 862

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T  G  I+I+KNLR+C DCH   K +S  T R I +RD NRFHHF NG+CSCGD+W
Sbjct: 863 LLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 162/350 (46%), Gaps = 36/350 (10%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           K +   T+L+   AR G +  A  LF  +P   +VS   M+T Y + G V  A+ LFD M
Sbjct: 319 KSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRM 378

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             ++ + W  MI GYAQ+G + EAL L + +    + P+  +  +   AC  IGALE+GR
Sbjct: 379 PFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGR 438

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGS----------------------------- 158
            +HS    +   + N  V  ALI+MY KC +                             
Sbjct: 439 QVHSLAVKA-GCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQN 497

Query: 159 --LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
             L+DAR +FD +  +DVV W ++I  YA    G +A++ F  M     KP+      LL
Sbjct: 498 NMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILL 557

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           S C   G    G++  +T+  ++ ++ ++     ++++  + G   +++K V D   E D
Sbjct: 558 SVCGGLGSAKLGQQ-IHTVAIKHGMDSELIVANALMSMYFKCG-CADSHK-VFDSMEERD 614

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIG 325
              W T +  C  HG      K+ E++ S   L N  T+V L N  +  G
Sbjct: 615 IFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAG 664



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 140/321 (43%), Gaps = 55/321 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++  +T L+  YAR G VL A ++F  MP+R+ V+   M++CY + G++  AR LFD M 
Sbjct: 94  NVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMP 153

Query: 69  EKDVVCWNVMIDGYA----------------------------------QHGLANEALVL 94
            +DV  WN M+ GY                                   QHG   +   +
Sbjct: 154 SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHG---KGWDI 210

Query: 95  FRRMLAEKVEPNEVTAVAVLSACG---QIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           FR M  E   P++    +VLSA      +G LE  R     +      + +V +GT+++N
Sbjct: 211 FRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLR----PLVLKTGFESDVVIGTSILN 266

Query: 152 MYSKCGSLKDARL-VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           +Y++  S  D  +  FD + +++   W++MI   + HG   DA         ++  PS  
Sbjct: 267 VYTRDASALDIAIKFFDGMVERNEYTWSTMIAALS-HGGRIDAAIAVYGRDPVKSIPSQ- 324

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
               LL+  A  G + E R  F  + D     P V  +  M+    + G V+EA +L   
Sbjct: 325 --TALLTGLARCGRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDR 377

Query: 271 MKIEPDSVLWGTLLGACRLHG 291
           M    +++ W  ++     +G
Sbjct: 378 MPFR-NTISWAGMIAGYAQNG 397



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 128/297 (43%), Gaps = 20/297 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +V  +LDK  +  ++ +   AR G +  A ++F  MP R +++  +M++ Y   G +  A
Sbjct: 26  SVHRALDKSAH--SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDA 83

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R+LFD +   +V    +++ GYA+ G   +A    RR+     E N V   A++S   Q 
Sbjct: 84  RILFDAISGGNVRTATILLSGYARLGRVLDA----RRVFDGMPERNTVAWNAMVSCYVQN 139

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G +   R +   + +      +V    +++  Y     + DA  +F ++  +++V W  M
Sbjct: 140 GDITMARRLFDAMPSR-----DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVM 194

Query: 181 IVGYA---MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG-RRFFNTMK 236
           I GY     HG G D   +F  M      P    F  +LSA    GL + G       + 
Sbjct: 195 ISGYVRIEQHGKGWD---IFRMMHHEGASPDQSNFASVLSAV--TGLQDLGVLEVLRPLV 249

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            +   E  V     ++N+ +R     +      D  +E +   W T++ A    G I
Sbjct: 250 LKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRI 306


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/480 (46%), Positives = 323/480 (67%), Gaps = 5/480 (1%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAA 60
           S+  D +    L    A+  DV   E + + + +    SL     +++  Y+  G   +A
Sbjct: 131 SILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESA 190

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +F+ M  +D V WN +I+G+A +G+ NEAL L+R M +E VEP+  T V++LSAC ++
Sbjct: 191 YQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVEL 250

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL  G  +H Y+     ++ N     AL+++YSKCG+ +DA+ VFD + ++ VV W S+
Sbjct: 251 GALALGERVHMYMVKVGLVQ-NQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           IVG A++G G +AL+LF E+ R  LKPS+ITF+G+L AC+H G+++EG  +F  MK+EY 
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYG 369

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P++EH+GCMV+LL RAG+V +AY  + +M + P++V+W TLLGAC +HG++ LGE   
Sbjct: 370 ILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVAR 429

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             +      +SG +VLLSN+YA+   W  V  VR +M  KGV+K PG S +EL N+V+EF
Sbjct: 430 AEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEF 489

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP+S+E Y ML +I   LK EGYVP+T  VL DI E++K+ +L  H+EK+A+AF
Sbjct: 490 IMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAF 549

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L++T PGT I+I+KNLRVC DCH   KLISK   R+I++RDR+RFHHF +G+CSC DYW
Sbjct: 550 MLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 130/254 (51%), Gaps = 15/254 (5%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM- 98
           +LVSL+  ++  A+         +F+ ++  ++  WN MI G+A+    + A+ LF +M 
Sbjct: 77  ALVSLSAPMSFAAQ---------IFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMH 127

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSKCG 157
            A  + P+  T   +  A  ++  +  G  IHS +   RN   +++ V  +L++MYS  G
Sbjct: 128 AASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVV--VRNGFDSLRFVQNSLVHMYSVFG 185

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             + A  VF+ ++ +D V WNS+I G+A++G   +AL L+ EM    ++P   T + LLS
Sbjct: 186 FAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLS 245

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC   G +  G R    M     ++ +      +++L S+ G   +A K+  +M+ E   
Sbjct: 246 ACVELGALALGERVHMYMVKVGLVQNQ-HASNALLDLYSKCGNFRDAQKVFDEME-ERSV 303

Query: 278 VLWGTLLGACRLHG 291
           V W +L+    ++G
Sbjct: 304 VSWTSLIVGLAVNG 317



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 38/191 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L ++ + S +L+DLY++ G+   A+K+F  M +RS+VS                  
Sbjct: 264 VKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVS------------------ 305

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W  +I G A +GL NEAL LF  +  + ++P+E+T V VL AC   G
Sbjct: 306 -------------WTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCG 352

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV----VVW 177
            L+ G      ++    I   ++    ++++  + G + DA   +D + +  V    V+W
Sbjct: 353 MLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA---YDYIRNMPVPPNAVIW 409

Query: 178 NSMIVGYAMHG 188
            +++    +HG
Sbjct: 410 RTLLGACTIHG 420



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 38/241 (15%)

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           +N   N  +  AL+++      +  A  +F+++   ++  WN+MI G+A       A++L
Sbjct: 66  QNPDFNKHLIFALVSL---SAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVEL 122

Query: 197 FNEM-CRIRLKPSDITFIGLLSACA-----------HAGLVNEG----RRFFNTMKDEYA 240
           F++M     + P   TF  L  A A           H+ +V  G    R   N++   Y+
Sbjct: 123 FSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYS 182

Query: 241 IEPKVEH---------------YGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGT 282
           +    E                +  ++N  +  G   EA  L  +M    +EPD     +
Sbjct: 183 VFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVS 242

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           LL AC   G +ALGE++  Y++   L  N      L ++Y+  GN+    +V   M+E+ 
Sbjct: 243 LLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERS 302

Query: 342 V 342
           V
Sbjct: 303 V 303


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/475 (49%), Positives = 314/475 (66%), Gaps = 8/475 (1%)

Query: 13  STSLVDLYA---RGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAARVLFD 65
           S SLV++ +   R GD+ S E +   + +    R++   T ++  Y K G +  AR +FD
Sbjct: 209 SFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFD 268

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M EK++V W+ MI GYA +GL  EAL LF +ML E ++P+    V VL +C ++GALE 
Sbjct: 269 GMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALEL 328

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G W  + I N      N  +GTALI+MY+KCG +  A  VF  +  KD VVWN+ I G A
Sbjct: 329 GDWASNLI-NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLA 387

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           M G  KDAL LF +M +  +KP   TF+GLL AC HAGLV EGRR+FN+M+  + + P++
Sbjct: 388 MSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEI 447

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EHYGCMV+LL RAG ++EA++L+  M +E ++++WG LLG CRLH +  L E + + LI+
Sbjct: 448 EHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIA 507

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               +SG YVLLSNIYAA   W+  A++R++M E+GV+K PG S IE+   VH+FL GD 
Sbjct: 508 LEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDT 567

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP S++IY  L E+   LKA GYVP T  VL DI E++K++ +  HSEKLAVAFGLIST
Sbjct: 568 SHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVAFGLIST 627

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            P   I +VKNLRVC DCH   K IS+  GR+I++RD NRFH F +G CSC DYW
Sbjct: 628 APNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW 682



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G +  A  +FDD+ +K+   W   I GY   G   EA+ +FRR+L   + P
Sbjct: 148 SLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRP 207

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  + V VLSAC + G L SG WI  YI  +  ++ NV V TAL++ Y KCG+++ AR V
Sbjct: 208 DSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR-NVFVATALVDFYGKCGNMERARSV 266

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD + +K++V W+SMI GYA +G  K+AL LF +M    LKP     +G+L +CA  G +
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGAL 326

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             G    N +     ++  V     ++++ ++ G+++ A+++   M+ + D V+W   + 
Sbjct: 327 ELGDWASNLINGNEFLDNSVLGTA-LIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAIS 384

Query: 286 ACRLHGNI--ALG 296
              + G++  ALG
Sbjct: 385 GLAMSGHVKDALG 397



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 11/226 (4%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           + D  +E ++  +N MI G   +    E++ ++  M  E + P+  T   VL AC ++  
Sbjct: 64  ILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLD 123

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            E G  +HS +  +   + +  V  +LIN+Y+KCG + +A  VFD + DK+   W + I 
Sbjct: 124 SELGVKMHSLVVKA-GCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATIS 182

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY   G  ++A+ +F  +  + L+P   + + +LSAC   G +  G        DEY  E
Sbjct: 183 GYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWI-----DEYITE 237

Query: 243 ----PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                 V     +V+   + G +E A + V D  +E + V W +++
Sbjct: 238 NGMVRNVFVATALVDFYGKCGNMERA-RSVFDGMLEKNIVSWSSMI 282



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 36/213 (16%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           + D+  + ++ ++N+MI G  ++   ++++++++ M +  L P   TF  +L ACA   L
Sbjct: 64  ILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARV-L 122

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL----------------- 267
            +E     +++  +   E        ++NL ++ G ++ A+K+                 
Sbjct: 123 DSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATIS 182

Query: 268 -----------------VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA- 309
                            +++M + PDS     +L AC+  G++  GE I EY+    +  
Sbjct: 183 GYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR 242

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           N      L + Y   GN +    V   M EK +
Sbjct: 243 NVFVATALVDFYGKCGNMERARSVFDGMLEKNI 275


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/437 (51%), Positives = 292/437 (66%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +   Y+K G+   A  +F+ ++EKD+V W+ M+ GYAQ G    A+ +F ++  E VE
Sbjct: 431 TALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE 490

Query: 105 PNEVTAVAVLSACG-QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  +VL+AC     ++E G+  HS    S      + V +AL+ MY+K G+++ A 
Sbjct: 491 PNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAKRGNIESAN 549

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF R  D+D+V WNSMI GYA HG GK +L++F EM    L+   ITFIG++SAC HAG
Sbjct: 550 EVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAG 609

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LVNEG+R+F+ M  +Y I P +EHY CMV+L SRAG +E+A  L+  M     + +W TL
Sbjct: 610 LVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTL 669

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACR+H N+ LGE  AE LIS    +S  YVLLSNIYA  GNW   A+VR LM  K V+
Sbjct: 670 LAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVK 729

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE G S IE+ NK   F+AGDL HP+S  IY+ LEE++  LK  GY P T+ VLHD+ E+
Sbjct: 730 KEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEE 789

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  L  HSE+LA+AFGLI+T PGT I+IVKNLRVC DCH V KLISK  GR I++RD 
Sbjct: 790 HKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDS 849

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G+CSCGDYW
Sbjct: 850 NRFHHFKGGSCSCGDYW 866



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 42/334 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K   V     +FD+M  K+VV W  ++ GY Q+GL  +AL LF +M  E ++
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  AVL      GA+E G  +H+ +  S  +   + VG +++NMYSK   + DA+ 
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS-GLDSTIFVGNSMVNMYSKSLMVSDAKA 249

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA---- 220
           VFD + +++ V WNSMI G+  +G   +A +LF  M    +K +   F  ++  CA    
Sbjct: 250 VFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 221 -------HAGLVNEGRRFFNTMKDEYAIE--------------------PKVEHYGCMVN 253
                  H  ++  G  F   +K    +                       V  +  +++
Sbjct: 310 MSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG-EKIAEYLISQNLA 309
              + G+ + A  L   M+   + P+   + T+L A     N A+   +I   ++  N  
Sbjct: 370 GYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA-----NAAVSPSQIHALVVKTNYE 424

Query: 310 NSGTY-VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           NS +    LS+ Y+ IG+ +  A++  L+ EK +
Sbjct: 425 NSPSVGTALSDSYSKIGDANEAAKIFELIDEKDI 458



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 147/271 (54%), Gaps = 11/271 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T ++  Y+K  E+  A  LF  M   ++VV W  +I GY Q+G  + A+ LF +M  E V
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGV 392

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T   +L+A     A  S   IH+ +  + N + +  VGTAL + YSK G   +A 
Sbjct: 393 RPNHFTYSTILTA----NAAVSPSQIHALVVKT-NYENSPSVGTALSDSYSKIGDANEAA 447

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHA 222
            +F+ +++KD+V W++M+ GYA  G  + A+++F ++ +  ++P++ TF  +L+AC A  
Sbjct: 448 KIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPT 507

Query: 223 GLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
             V +G++F + ++K  ++    V     +V + ++ G +E A + V   +++ D V W 
Sbjct: 508 ASVEQGKQFHSCSIKSGFSNALCVS--SALVTMYAKRGNIESANE-VFKRQVDRDLVSWN 564

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +++     HG      KI E + S+NL   G
Sbjct: 565 SMISGYAQHGCGKKSLKIFEEMRSKNLELDG 595



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 3/232 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           ++ LFD+  ++ +   N ++  ++++    EAL LF  +       +  +   VL  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +     G+ +H        ++ +V VGT+L++MY K  S++D   VFD +  K+VV W S
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           ++ GY  +G  + AL+LF++M    +KP+  TF  +L   A  G V +G +  +TM  + 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKS 222

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            ++  +     MVN+ S++  V +A K V D     ++V W +++     +G
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDA-KAVFDSMENRNAVSWNSMIAGFVTNG 273



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 40/221 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K      L VS++LV +YA+ G++ SA ++F     R LVS  +M++ YA        
Sbjct: 520 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYA-------- 571

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                  QHG   ++L +F  M ++ +E + +T + V+SAC   
Sbjct: 572 -----------------------QHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 608

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G +  G+     +    +I   ++  + ++++YS+ G L+ A  + +++       +W +
Sbjct: 609 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 668

Query: 180 MIVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +H     G+ A +       I L+P D     LLS
Sbjct: 669 LLAACRVHLNVQLGELAAEKL-----ISLQPQDSAAYVLLS 704


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/434 (50%), Positives = 290/434 (66%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ML  +A+ G+V+  + LFD+M E+DV+ WN M+  Y  +G   EAL  F+RM    + P+
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T V +LSA  Q+  LE G+ IHS I +S ++ + + +GTAL++MY+KCG ++ +RL+F
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSII-DSLSLPMTISIGTALLDMYAKCGCIEQSRLLF 119

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           + +  +DV  WN MI G A HG GKDAL LF       L P ++TF+G+L+AC+ AGLV 
Sbjct: 120 ENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVK 179

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EGR +F  M D Y IEP++EHYGCMV+LL RAG V EA K++  M I PD VLW  +L A
Sbjct: 180 EGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCA 239

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+HG   LGEKI   LI  +    G YV L++IYA    W+ V RVR LM E+   K  
Sbjct: 240 CRIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVA 299

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S IE   KVH F+AG   H +S EI  MLE I   L A GYVP    VLHDIGE++K+
Sbjct: 300 GWSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKE 359

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           N+++VHSE+LA+AFGL+ T PG+ I+IVKNLRVC DCH V K+IS+   R+I++RD +RF
Sbjct: 360 NAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRF 419

Query: 467 HHFVNGTCSCGDYW 480
           HHF  G CSC DYW
Sbjct: 420 HHFKEGKCSCLDYW 433



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 4/180 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  +R+LF++M  +DV  WNVMI G A HGL  +AL LF R L E + 
Sbjct: 100 TALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLH 159

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  VT V VL+AC + G ++ GR     + +S  I+  ++    ++++  + G + +A  
Sbjct: 160 PMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIK 219

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHA 222
           V + +    D V+W  ++    +HG  +   ++ N +  I L P+ D  ++ L S  A++
Sbjct: 220 VIESMAISPDPVLWAMVLCACRIHGLAELGEKIGNRL--IELDPTYDGHYVQLASIYANS 277


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/440 (48%), Positives = 304/440 (69%), Gaps = 2/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +L  M  C  + G   A +V FDD  + D V W+ MI G+ + G ++ A+ LFR M  
Sbjct: 163 LNTLIHMYCCLGEDGFEFAEKV-FDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQV 221

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+E+T V+VLSAC  +GALE G+W+ SY+E  +NI  +V++  ALI+M++KCG++ 
Sbjct: 222 MGVCPDEITMVSVLSACADLGALELGKWVESYVEK-KNIPKSVELCNALIDMFAKCGNVD 280

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A  +F +++ + +V W S+I G AMHG G DA+ LF+EM    + P D+ FIG+LSAC+
Sbjct: 281 KAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACS 340

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV++GR +F +M+  ++I PKVEHYGCMV+LL R G V+EA++ V  M  EP+ ++W
Sbjct: 341 HSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIW 400

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            T++ AC   G + LGE I++ LI     +   YVLLSNIYA +  W+   +VR +M  +
Sbjct: 401 RTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMR 460

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G++K PG + IE++N+++EF+AGD  H + KEIY M++E+   +K  GYVP T  VL DI
Sbjct: 461 GMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDI 520

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+++L  HSEKLA+AF L++T PGTSI+IVKNLRVC DCH+  K ISK   R+I++
Sbjct: 521 DEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVV 580

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDRNRFHHF NG CSC D+W
Sbjct: 581 RDRNRFHHFKNGLCSCRDFW 600



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 12/227 (5%)

Query: 71  DVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           D   +N +I  Y+Q     + + + +R ML   V PN+ T   VL  C  IG+L  G+ +
Sbjct: 88  DAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCV 147

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           H  +      + +V V   LI+MY   G    + A  VFD     D V W++MI G+   
Sbjct: 148 HGCVVKF-GFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRL 206

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G    A+ LF EM  + + P +IT + +LSACA  G +  G ++  +  ++  I   VE 
Sbjct: 207 GCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVESYVEKKNIPKSVEL 265

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDS---VLWGTLLGACRLHG 291
              ++++ ++ G V++A KL   M    DS   V W +++    +HG
Sbjct: 266 CNALIDMFAKCGNVDKAIKLFRQM----DSRTIVSWTSVIAGLAMHG 308


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/419 (52%), Positives = 294/419 (70%), Gaps = 2/419 (0%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF +M  +DVV WN M+  YAQ G  NEAL LF +M A  V+P E T V++LSAC  +GA
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 229

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G  +H+YI ++R I+VN  VGTAL++MY+KCG +  A  VF+ +  KDV+ WN++I 
Sbjct: 230 LDKGLHLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIA 288

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G A+HG  K+A +LF EM    ++P+DITF+ +LSAC+HAG+V+EG++  + M   Y IE
Sbjct: 289 GMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIE 348

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           PKVEHYGC+++LL+RAG +EEA +L+  M +EP+    G LLG CR+HGN  LGE + + 
Sbjct: 349 PKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKR 408

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           LI+    +SG Y+LLSNIYAA   WD   +VR LMK  G+ K PG S IEL   VH F+A
Sbjct: 409 LINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVA 468

Query: 363 GDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           GD  HP+S +IY  L EI+  LK A G+   T  VL D+ E+ K+++L VHSEKLA+A+G
Sbjct: 469 GDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYG 528

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+      +I+IVKNLRVC DCH V KLISK  GR+I++RDRNRFHHF +G CSC D+W
Sbjct: 529 LLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 83/145 (57%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G+++ A  +F+ ME KDV+ WN +I G A HG   EA  LF+ M    VE
Sbjct: 253 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVE 312

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           PN++T VA+LSAC   G ++ G+ +   + +S  I+  V+    +I++ ++ G L++A  
Sbjct: 313 PNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAME 372

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHG 188
           L+     + +     +++ G  +HG
Sbjct: 373 LIGTMPMEPNPCALGALLGGCRIHG 397



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G   DA  +F  +  +DVV WNSM+  YA  G   +AL LF++M  + +KP++ T + LL
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SACAH G +++G      + D   IE        +V++ ++ G++  A ++   M+   D
Sbjct: 222 SACAHLGALDKGLHLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAME-SKD 279

Query: 277 SVLWGTLLGACRLHGNIALGEKI 299
            + W T++    +HG++   +++
Sbjct: 280 VLAWNTIIAGMAIHGHVKEAQRL 302


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 300/440 (68%), Gaps = 5/440 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML---AE 101
           T++++ Y+  G V  AR LF  M E++V+ W+ MI+GY + G   EAL LFR M      
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V PNE T   VL+ACG++GALE G+W H+YI+    + V+V +GTALI+MY+KCGS++ 
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKC-GMPVDVVLGTALIDMYAKCGSVEK 221

Query: 162 ARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           A  VF  +  +KDV+ W++MI G AMHG  ++ + LF++M    ++P+ +TF+ +  AC 
Sbjct: 222 ATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACV 281

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GLV+EG+ +   M ++Y+I P ++HYGCMV+L  RAG+++EA+ +V  M +EPD ++W
Sbjct: 282 HGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVW 341

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL   R+HG+I   E   + LI     NSG YVLLSN+YA  G W+ V  VR LM+  
Sbjct: 342 GALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETM 401

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G++K PGCS IE+   +HEF  GD  HP++++I+MMLEEI   LK EGYV  T+ VL D+
Sbjct: 402 GIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDL 461

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+ +L +HSEKLA+A+G + T PGT I+IVKNLR+C DCH   K+ISK   R+I++
Sbjct: 462 DEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIV 521

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF  G CSC DYW
Sbjct: 522 RDCNRFHHFTQGLCSCRDYW 541



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 10/225 (4%)

Query: 75  WNVMIDGYAQ-----HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           WN +I  + Q      G  +  + +F RM    V+P+  T   +L +      L  GR +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H+ I     + ++  V T+LI+MYS  G +  AR +F  + +++V+ W+ MI GY   G 
Sbjct: 87  HAQILRF-GLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQ 145

Query: 190 GKDALQLFNEMCRI---RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
            K+AL LF EM  +    ++P++ T  G+L+AC   G +  G ++ +   D+  +   V 
Sbjct: 146 YKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVV 204

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
               ++++ ++ G VE+A  +  ++    D + W  ++    +HG
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHG 249


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/439 (48%), Positives = 293/439 (66%), Gaps = 5/439 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y     +++AR+LFD + + ++  WNV+I GYA +G    A+ L+ +M    + 
Sbjct: 114 TKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV 173

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T   VL AC  + A+E GR IH ++  +   + +V VG ALI+MY+KCG +  AR 
Sbjct: 174 PDNFTFPFVLKACAALSAIEHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSARE 232

Query: 165 VFDRVNDKD---VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           VFD++  +D   VV WN+MI GYAMHG   +AL LF EM R+  KP  ITF+G+LSAC+H
Sbjct: 233 VFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSH 291

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            GL+ EG  FF TM  +Y I+P V+HY CMV+LL  +G+++EAY L+M MK+ PDS +WG
Sbjct: 292 GGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWG 351

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
            LL +C++H N+ LGE   E LI     ++G YV+LSNIYA  G W+GVA++R LM ++ 
Sbjct: 352 ALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRR 411

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           ++K   CS IE+ NKVH FL+GD  HP S EIY  LE + G +K  GY P T  V HD+ 
Sbjct: 412 LKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVE 471

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           + +K N +  HSE+LA+AFGLIST PGT + I KNLR+C DCH   K ISK T R+I +R
Sbjct: 472 DDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVR 531

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NR+HHF +G CSCGDYW
Sbjct: 532 DVNRYHHFKDGVCSCGDYW 550



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 45/230 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS---LVSLTTMLTCYAKQGEVA 58
           V+   +KD++V  +L+D+YA+ G V SA ++F  +  R    +VS   M+T YA      
Sbjct: 203 VQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYA------ 256

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
                                     HG A EAL LF  M     +P+ +T V VLSAC 
Sbjct: 257 -------------------------MHGHATEALDLFEEM-NRVAKPDHITFVGVLSACS 290

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVW 177
             G LE G      +     I   VQ  T ++++    G L +A  L+       D  VW
Sbjct: 291 HGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 350

Query: 178 NSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAG 223
            +++    +H     G+ AL+       I L+P D   ++ L +  A AG
Sbjct: 351 GALLNSCKIHANVELGEIALERL-----IELEPDDAGNYVILSNIYAQAG 395


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/437 (48%), Positives = 304/437 (69%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +L  Y K  ++ +A+ +F+ + EKDV+ W  M+ G A+ G   E+L LFR+M   K+E
Sbjct: 50  NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE 109

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+T V VLSAC Q GAL+ G++IH  I+    I  ++ + TAL++MY+KCGS+  A  
Sbjct: 110 PDEITLVGVLSACAQTGALDQGKYIHLLIDKFE-INCDLVLETALVDMYAKCGSIDLALQ 168

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF R+  ++V  WN+MI G AMHG G+DA+ LF++M   +L P D+TFI LL AC+HAGL
Sbjct: 169 VFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGL 228

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F  MK+++ IEP++EHYGC+V+LL RA +V++A   + +M I+ +SVLW TLL
Sbjct: 229 VDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 288

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR  G+  L EKI   +I     + G YV+LSN+YA +  WD   ++R  MK KG++K
Sbjct: 289 GACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 348

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEK 403
            PGCS IEL+  +H+F+AGD  H ++++IY M+EE+   +  + G+VP T  VL DI E+
Sbjct: 349 TPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE 408

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K++SL +HSEKLA+A GLIST  G+ I+IVKNLRVC DCH+  K+ SK   R+I+ RDR
Sbjct: 409 EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDR 468

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFHHF  G+CSC D+W
Sbjct: 469 SRFHHFKEGSCSCMDFW 485



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 119/192 (61%), Gaps = 3/192 (1%)

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + + P+EVT V+++ AC Q+G LE G+ +HSY      +  N+ V  A+++MY KC  ++
Sbjct: 5   DNLRPDEVTMVSLVPACAQLGNLERGKLLHSY-SKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+ VF+R+ +KDV+ W SM+ G A  G+ +++L LF +M   +++P +IT +G+LSACA
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G +++G ++ + + D++ I   +     +V++ ++ G ++ A ++   M++  +   W
Sbjct: 124 QTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTW 181

Query: 281 GTLLGACRLHGN 292
             ++G   +HG+
Sbjct: 182 NAMIGGLAMHGH 193



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV  T ++  YAK G +  A  +F  M  ++V  WN MI G A HG   +A+ LF +M  
Sbjct: 147 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEX 206

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           +K+ P++VT +A+L AC   G ++ G  +   ++N   I+  ++    ++++  +   + 
Sbjct: 207 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 266

Query: 161 DARLVFDRVNDK-DVVVWNSMI 181
           DA    + +  K + V+W +++
Sbjct: 267 DALAFIENMPIKANSVLWATLL 288


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/517 (43%), Positives = 323/517 (62%), Gaps = 39/517 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  LD +LYV   L+ +Y +   +  A+++   +P R +VS  +M++ YA+ G    A
Sbjct: 146 VLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDA 205

Query: 61  RVLFDDME-------------------------------------EKDVVCWNVMIDGYA 83
             L  +ME                                     +K V+ WNVMI  Y 
Sbjct: 206 LELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYV 265

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
            + +  EA+VL+ +M A  VEP+ V+ V+VL A G + AL  GR +H + E  + +  N+
Sbjct: 266 NNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLP-NL 324

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +  ALI+MY+KCG L+DAR VF+++  +DVV W S+I  Y   G G+DA+ +F EM   
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNS 384

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            L P  I F+ +L+AC+HAGL+++GR +FN M  E  I PK+EH+ C+V+LL RAG+++E
Sbjct: 385 GLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMA-ECGITPKLEHFACVVDLLGRAGKIDE 443

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
           AY  +  M +EPD  +WG LL ACR++ N+ +G   A+ L+  N  +SG YVLLSNIYA 
Sbjct: 444 AYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAK 503

Query: 324 IGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGW 383
            G W  VA +R++M+ KG++K PG S++EL++ VH FLAGD  HP+SK+IY  L+ + G 
Sbjct: 504 AGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGK 563

Query: 384 LKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDC 443
           +K  GY+P+T   LHD+ E+ K+  L VHSEKLAVAF +I+T+PGT I++ KNLRVC DC
Sbjct: 564 MKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDC 623

Query: 444 HAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           H   KLISK   R+I++RD +RFHHF  G CSCGDYW
Sbjct: 624 HVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  GE   AR +FD++ +K+VV +NVMI  Y  + L  +AL++++ M  +   P+
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL A  +  +L  G  IH  +     + +N+ VG  LI MY KC SLK+A+ V 
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKI-GLDLNLYVGNGLIAMYGKCKSLKEAQQVL 178

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  +DVV WNSM+  YA +G   DAL+L  EM  + LKP+D T   LL A  +    N
Sbjct: 179 DEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDN 238

Query: 227 --EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWG 281
               +  F  +  +  I      +  M+ +       +EA  L   M+   +EPD V   
Sbjct: 239 VLYVKEMFLKLTKKSVIS-----WNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIV 293

Query: 282 TLLGACRLHGNIALGEKIAEY 302
           ++L A      ++LG ++ ++
Sbjct: 294 SVLPAYGDLSALSLGRRVHKF 314



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%)

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           Q   + + + +H  + N + ++ N  VG  L+ +Y+ CG    AR +FD + DK+VV +N
Sbjct: 30  QYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFN 89

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            MI  Y  +   KDAL ++  M      P   T+  +L A + +
Sbjct: 90  VMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRS 133


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/481 (46%), Positives = 308/481 (64%), Gaps = 2/481 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAA 59
            VK     DLYV  +L   Y   GDV +   +F  +P+ R +V+   +L  Y + G V A
Sbjct: 156 AVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRA 215

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +F++M  +D V W+ ++ GY + G  + AL +FR M+ + V  NE   V  LSA  Q
Sbjct: 216 AREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQ 275

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE GR++H  ++ +  + V+V VG AL++M+SKCG +  AR VFD +  +DV  WN+
Sbjct: 276 MGLLEHGRFVHEVVQRT-GMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNA 334

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G+DA++LF       L P+DITF+G+L+AC+  GLV EGRR+F  M D+Y
Sbjct: 335 MICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKY 394

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IEP++EHYGCMV+LL RAG V EA +L+  M I PD VLWGT+L AC+ H  + LG  +
Sbjct: 395 RIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITV 454

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI    A+ G YVLL++IYA    WD V  VR LM  +G  K  G S +E    +H+
Sbjct: 455 GNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHK 514

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD+ H  S +IY ML+ IN  L   GYVP    VLHDIG+++K ++++VHSE+LA+A
Sbjct: 515 FLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIA 574

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +G I T+ G+ I+IVKNL+VC DCH   K+++K   R+I++RD +RFHH   G CSC DY
Sbjct: 575 YGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDY 634

Query: 480 W 480
           W
Sbjct: 635 W 635


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/436 (48%), Positives = 292/436 (66%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y +  E+  AR LFD+  EK +  WN MI G  Q+GL + A+ LF+ M    V 
Sbjct: 171 TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVN 230

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++LSAC QIGAL  G W+HS I+++R  + NV V TALI+MY+KCGS+  AR 
Sbjct: 231 PNPVTVTSILSACAQIGALSLGEWVHSLIKSNR-FESNVYVSTALIDMYAKCGSITVARE 289

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD + +K+ V WN+MI GY +HG G++AL+LF +M    +KP+ +TF+ +L AC+HAGL
Sbjct: 290 LFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGL 349

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG   F+TM  ++  EP  EHY CMV++L RAGQ+++A + +  M +EP   +WG LL
Sbjct: 350 VKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALL 409

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC +H +  L    +E L   +  N G YVL+SNIY+    +   A VR + K+K + K
Sbjct: 410 GACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAK 469

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGC+ IE+    H F +GD  HP+SK IY  L+++ G +   G+  +T  VLHD+ E++
Sbjct: 470 TPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEE 529

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +++VHSEKLA+AFGLIST+PG  I+I+KNLRVC DCH   K +SK T R I++RD N
Sbjct: 530 KELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDAN 589

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 590 RFHHFKDGLCSCGDYW 605



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 142/286 (49%), Gaps = 18/286 (6%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT +++ ++K GEV  AR+LF ++ +KD++  N MI G+  +G   +++ LF+ +L+   
Sbjct: 69  LTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGE 128

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN---IKVNV----QVGTALINMYSKC 156
             +  T V ++      G        HSY+ N  +   +K+ +     V TAL  +Y + 
Sbjct: 129 RVSSSTIVGLIPVYSPFG--------HSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
             +  AR +FD   +K +  WN+MI G   +G    A+ LF  M +  + P+ +T   +L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SACA  G ++ G    + +K     E  V     ++++ ++ G +  A +L  D+  E +
Sbjct: 241 SACAQIGALSLGEWVHSLIKSN-RFESNVYVSTALIDMYAKCGSITVAREL-FDLMPEKN 298

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
            V W  ++    LHG+     K+   ++S ++  +G    LS +YA
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTG-LTFLSVLYA 343



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 40/300 (13%)

Query: 78  MIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
           MI G+ ++    +++ +F  M L      +  T +AVL A  ++  L+ G  I   +   
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILC-LAIK 59

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
                +V + T LI+++SKCG ++ ARL+F  +  KD++  N+MI G+  +G  +D+++L
Sbjct: 60  CGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 197 FNEMCRIRLKPSDITFIGLLSA----------------CAHAGLVNEGRR---------- 230
           F E+     + S  T +GL+                  C   G+V+              
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 231 -----FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGT 282
                F   + DE A E  +  +  M++  ++ G  + A  L   M+   + P+ V   +
Sbjct: 180 LNEMIFARQLFDESA-EKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTS 238

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
           +L AC   G ++LGE +   LI  N   S  YV   L ++YA  G+      +  LM EK
Sbjct: 239 ILSACAQIGALSLGEWV-HSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEK 297



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 31/157 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            + ++YVST+L+D+YA+ G +  A +LF  MP+++ V+   M++ Y              
Sbjct: 264 FESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGY-------------- 309

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                              HG   EAL LF  ML+  V+P  +T ++VL AC   G ++ 
Sbjct: 310 -----------------GLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKE 352

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           G  I   + +    +   +    ++++  + G LK A
Sbjct: 353 GDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKA 389


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/440 (46%), Positives = 305/440 (69%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+SL TM   YAK G+VA A++LFD M+  +++ WN MI GYA++G A +A+ LF  M+ 
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMIN 316

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + V P+ ++  + +SAC Q+G+LE  RW+  Y+  S + + +V + +ALI+M++KCGS++
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS-DYRDDVFISSALIDMFAKCGSVE 375

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDR  D+DVVVW++MIVGY +HG  ++A+ L+  M R  + P+D+TF+GLL AC 
Sbjct: 376 CARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACN 435

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+G+V EG  FFN M D + I P+ +HY C+++LL RAG +++AY+++  M ++P   +W
Sbjct: 436 HSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC+ H ++ LG+  A+ L S + +N+G YV LSN+YAA   WD VA VR  MKEK
Sbjct: 495 GALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ GCS +E+  ++  F  GD  HP+ +EI   +E I   LK  G+V      LHD+
Sbjct: 555 GLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDL 614

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +++ + +L  HSE++ +A+GLIST  GT+++I KNLR C +CHA  KLISK  GR+I++
Sbjct: 615 NDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVV 674

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF +G CSCGDYW
Sbjct: 675 RDTNRFHHFKDGVCSCGDYW 694



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 132/244 (54%), Gaps = 7/244 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++   +  G++  AR +FDD+    V  WN +I GY+++    +AL+++ +M   +V
Sbjct: 56  ITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARV 115

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T   +L ACG +  L+ GR++H+ +      + +V V   LI +Y+KC  L  AR
Sbjct: 116 SPDSFTFPHLLKACGGLSHLQMGRFVHAQVFR-LGFEADVFVQNGLIALYAKCRRLGCAR 174

Query: 164 LVFD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            VF+   + ++ +V W +++  YA +G   +AL++F++M ++ +KP  +  + +L+A   
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTC 234

Query: 222 AGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
              + +GR    + MK     EP +     +  + ++ GQV  A K++ D    P+ +LW
Sbjct: 235 LQDLEQGRSIHASVMKMGLETEPDL--LISLNTMYAKCGQVATA-KILFDKMKSPNLILW 291

Query: 281 GTLL 284
             ++
Sbjct: 292 NAMI 295


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/434 (49%), Positives = 289/434 (66%), Gaps = 2/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V +AR +FD +  +D V WN M+  Y+Q+G  +  L L   M+   + P 
Sbjct: 217 LIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPT 276

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T V  +SA     AL  GR +H  +   +  + + +V TAL++MY+KCGS++ AR +F
Sbjct: 277 EATLVTAISASADNAALPQGRELHG-LSWRQEFESHDKVKTALVDMYAKCGSVRVARNLF 335

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +R+  K VV WN+MI GYAMHG   +AL LF EM R+  KP  ITF+G+LSAC+H GL+ 
Sbjct: 336 ERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLE 394

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG  FF TM  +Y I+P V+HY CMV+LL  +G+++EAY L+M MK+ PDS +WG LL +
Sbjct: 395 EGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNS 454

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C++H N+ LGE   E LI     ++G YV+LSNIYA  G W+GVA++R LM ++ ++K  
Sbjct: 455 CKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSI 514

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
            CS IE+ NKVH FL+GD  HP S EIY  LE + G +K  GY P T  V HD+ + +K 
Sbjct: 515 ACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKA 574

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           N +  HSE+LA+AFGLIST PGT + I KNLR+C DCH   K ISK T R+I +RD NR+
Sbjct: 575 NMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRY 634

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSCGDYW
Sbjct: 635 HHFKDGVCSCGDYW 648



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 136/249 (54%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y     +++AR+LFD + + ++  WNV+I GYA +G    A+ L+ +M    + 
Sbjct: 114 TKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLV 173

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T   VL AC  + A+E GR IH ++  +   + +V VG ALI+MY+KCG +  AR 
Sbjct: 174 PDNFTFPFVLKACAALSAIEHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSARE 232

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++  +D V+WNSM+  Y+ +G     L L +EM    L+P++ T +  +SA A    
Sbjct: 233 VFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAA 292

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +GR     + + E+    KV+    +V++ ++ G V  A  L   + ++   V W  +
Sbjct: 293 LPQGRELHGLSWRQEFESHDKVK--TALVDMYAKCGSVRVARNLFERLGVK-RVVSWNAM 349

Query: 284 LGACRLHGN 292
           +    +HG+
Sbjct: 350 ITGYAMHGH 358



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 88/184 (47%), Gaps = 11/184 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G V  AR LF+ +  K VV WN MI GYA HG A EAL LF  M     +
Sbjct: 316 TALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAK 374

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           P+ +T V VLSAC   G LE G      +     I   VQ  T ++++    G L +A  
Sbjct: 375 PDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYN 434

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDI-TFIGLLSAC 219
           L+       D  VW +++    +H     G+ AL+       I L+P D   ++ L +  
Sbjct: 435 LIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERL-----IELEPDDAGNYVILSNIY 489

Query: 220 AHAG 223
           A AG
Sbjct: 490 AQAG 493


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/472 (44%), Positives = 309/472 (65%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKL--FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V  +L+ +YA+ G V  A ++      P  ++++ T++L  Y K G++  AR +FD ++ 
Sbjct: 315 VGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKH 374

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GYAQ+GL ++ALVLFR M+ E  +PN  T  AVLS    + +L+ G+ +
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSMIVGYAMHG 188
           H+       +  +V VG ALI MYS+ GS+KDAR +F+ + + +D + W SMI+  A HG
Sbjct: 435 HAVAIRLEEVS-SVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHG 493

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G +A++LF +M RI LKP  IT++G+LSAC H GLV +G+ +FN MK+ + IEP   HY
Sbjct: 494 LGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHY 553

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CM++LL RAG +EEAY  + +M IEPD V WG+LL +CR+H  + L +  AE L+  + 
Sbjct: 554 ACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDP 613

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y+ L+N  +A G W+  A+VR  MK+K V+KE G S +++ NKVH F   D  HP
Sbjct: 614 NNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHP 673

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   IY M+ +I   +K  G++P T  VLHD+ ++ K+  L  HSEKLA+AF LI+T   
Sbjct: 674 QRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKH 733

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH+  + IS    R+I++RD  RFHHF +G+CSC DYW
Sbjct: 734 TTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 152/292 (52%), Gaps = 36/292 (12%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           ++++ +L++LY + G    A +LF  MP ++  S  T+L+ +AK G + +AR +FD++ +
Sbjct: 48  VFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQ 107

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
            D V W  MI GY   GL   A+  F RM++  + P + T   VL++C    AL+ G+ +
Sbjct: 108 PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKV 167

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--------------------- 168
           HS++       V V V  +L+NMY+KCG    A++VFDR                     
Sbjct: 168 HSFVVKLGQSGV-VPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQ 226

Query: 169 ----------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLS 217
                     + D D+V WNS+I GY   G+   AL+ F+ M +   LKP   T   +LS
Sbjct: 227 FDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLS 286

Query: 218 ACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           ACA+   +  G++   + ++ +  I   V +   ++++ +++G VE A+++V
Sbjct: 287 ACANRESLKLGKQIHAHIVRADVDIAGAVGN--ALISMYAKSGAVEVAHRIV 336



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 41/213 (19%)

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD------------------------ 161
           GR IH+ I       + V +   L+N+Y K GS  D                        
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 162 -------ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
                  AR VFD +   D V W +MIVGY   G  K A+  F  M    + P+  TF  
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 215 LLSACAHAGLVNEGRRF--FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           +L++CA A  ++ G++   F     +  + P       ++N+ ++ G    A K+V D  
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVA---NSLLNMYAKCGDSVMA-KVVFDRM 206

Query: 273 IEPDSVLWGTLLGA----CRLHGNIALGEKIAE 301
              D+  W T++      C+    +AL +++ +
Sbjct: 207 RLKDTSTWNTMISMHMQFCQFDLALALFDQMTD 239


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/505 (45%), Positives = 308/505 (60%), Gaps = 33/505 (6%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAK-------------- 53
           +++   T++V  YAR G V  A KLF  MP+R+ VS T ML  Y                
Sbjct: 208 RNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM 267

Query: 54  -----------------QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
                             GEV  AR +F  M+E+D   W+ MI  Y + G   EAL LFR
Sbjct: 268 PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFR 327

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           RM  E +  N  + ++VLS C  + +L+ G+ +H+ +  S     ++ V + LI MY KC
Sbjct: 328 RMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRS-EFDQDLYVASVLITMYVKC 386

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G+L  A+ VF+R   KDVV+WNSMI GY+ HG G++AL +F++MC   + P D+TFIG+L
Sbjct: 387 GNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVL 446

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SAC+++G V EG   F TMK +Y +EP +EHY C+V+LL RA QV EA KLV  M +EPD
Sbjct: 447 SACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPD 506

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           +++WG LLGACR H  + L E   E L      N+G YVLLSN+YA  G W  V  +R  
Sbjct: 507 AIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREK 566

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           +K + V K PGCS IE+  KVH F  GD + HP+   I  MLE++ G L+  GY P    
Sbjct: 567 IKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSF 626

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHD+ E++K +SL  HSEKLAVA+GL+    G  I+++KNLRVC DCH+  KLI+K TG
Sbjct: 627 VLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 686

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I++RD NRFHHF +G CSC DYW
Sbjct: 687 REIILRDANRFHHFKDGHCSCKDYW 711



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 147/329 (44%), Gaps = 57/329 (17%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D+++   TS+V  Y R GDV  AE+LF  MP +++VS T ML    ++G V  AR LFD 
Sbjct: 114 DRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDM 173

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M EKDVV    MI GY + G  +EA  LF  M    V    VT  A++S   + G ++  
Sbjct: 174 MPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVA 229

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +   +     +       TA++  Y+  G +++A  +FD +  K VVV N MI+G+ +
Sbjct: 230 RKLFEVMPERNEVS-----WTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGL 284

Query: 187 H-------------------------------GFGKDALQLFNEMCRIRLKPSDITFIGL 215
           +                               G+  +AL LF  M R  L  +  + I +
Sbjct: 285 NGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISV 344

Query: 216 LSACAHAGLVNEGRRFFNTM------KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           LS C     ++ G++    +      +D Y     +  Y    NL+ RA QV   + L  
Sbjct: 345 LSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLV-RAKQVFNRFPL-- 401

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEK 298
                 D V+W +++     HG   LGE+
Sbjct: 402 -----KDVVMWNSMITGYSQHG---LGEE 422



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 24/316 (7%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           L+  + + G +  A ++F TMP R++VS T+M+  Y + G+VA A  LF  M  K+VV W
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSW 151

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
            VM+ G  Q G  ++A  LF  M+ EK        VAV +  G  G  E GR   +    
Sbjct: 152 TVMLGGLLQEGRVDDARKLF-DMMPEK------DVVAVTNMIG--GYCEEGRLDEARALF 202

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
               K NV   TA+++ Y++ G +  AR +F+ + +++ V W +M++GY   G  ++A  
Sbjct: 203 DEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASS 262

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           LF+ M    +KP  +    ++      G V++ RR F  MK     E     +  M+ + 
Sbjct: 263 LFDAM---PVKPV-VVCNEMIMGFGLNGEVDKARRVFKGMK-----ERDNGTWSAMIKVY 313

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTL---LGACRLHGNIALGEKIAEYLISQNLANSG 312
            R G   EA  L   M+ E  ++ + +L   L  C    ++  G+++   L+     +  
Sbjct: 314 ERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEF-DQD 372

Query: 313 TYV--LLSNIYAAIGN 326
            YV  +L  +Y   GN
Sbjct: 373 LYVASVLITMYVKCGN 388



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 23/273 (8%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            ++V  Y        A  LF  MPQR+ VS   +++ + K G ++ AR +FD M +++VV
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  M+ GY ++G   EA  LF  M  + V    V+   +L    Q G ++  R +   +
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDARKLFDMM 174

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                + V     T +I  Y + G L +AR +FD +  ++VV W +M+ GYA +G    A
Sbjct: 175 PEKDVVAV-----TNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVA 229

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC--M 251
            +LF  M     + +++++  +L    H+G + E    F+ M     ++P V    C  M
Sbjct: 230 RKLFEVMP----ERNEVSWTAMLLGYTHSGRMREASSLFDAM----PVKPVVV---CNEM 278

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +      G+V++A ++   MK E D+  W  ++
Sbjct: 279 IMGFGLNGEVDKARRVFKGMK-ERDNGTWSAMI 310



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 151/315 (47%), Gaps = 24/315 (7%)

Query: 13  STSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           S+  +  YAR G +  A K+F    +P R++ S   M+  Y +  +   A +LF+ M ++
Sbjct: 25  SSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR 84

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           + V WN +I G+ ++G+ +EA    RR+     + N V+  +++    + G +     + 
Sbjct: 85  NTVSWNGLISGHIKNGMLSEA----RRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLF 140

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            ++ +   +   V +G  L     + G + DAR +FD + +KDVV   +MI GY   G  
Sbjct: 141 WHMPHKNVVSWTVMLGGLL-----QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRL 195

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A  LF+EM     K + +T+  ++S  A  G V+  R+ F  M +   +      +  
Sbjct: 196 DEARALFDEMP----KRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVS-----WTA 246

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           M+   + +G++ EA  L   M ++P  V    ++G   L+G +    ++ + +  +   +
Sbjct: 247 MLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFG-LNGEVDKARRVFKGMKER---D 302

Query: 311 SGTYVLLSNIYAAIG 325
           +GT+  +  +Y   G
Sbjct: 303 NGTWSAMIKVYERKG 317



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 32/181 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D+DLYV++ L+ +Y + G+++ A+++F   P + +V   +M+T            
Sbjct: 365 VRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMIT------------ 412

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              GY+QHGL  EAL +F  M +  V P++VT + VLSAC   G
Sbjct: 413 -------------------GYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSG 453

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G  +   ++    ++  ++    L+++  +   + +A +LV     + D +VW ++
Sbjct: 454 KVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGAL 513

Query: 181 I 181
           +
Sbjct: 514 L 514


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/439 (47%), Positives = 304/439 (69%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT++  YA+ G V+ A  +FD+M  K+VV W+ MI  YA++G   EAL LFR M+    
Sbjct: 212 MTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTH 271

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +  PN VT V+VL AC    ALE G+ IH+YI   R +   + V +ALI MY++CG L+ 
Sbjct: 272 DSVPNSVTMVSVLQACAAFAALEQGKLIHAYILR-RGLDSILPVISALITMYARCGKLES 330

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            +L+FDR++ KDVV+WNS+I  Y +HG+G+ A+++F EM      PS I+FI +L AC+H
Sbjct: 331 GQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSH 390

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            GLV EG++ F +M  E+ I+P VEHY CMV+LL RA +++EA K++ D++IEP   +WG
Sbjct: 391 TGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWG 450

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLGACR+H ++ L E+ ++ L      N+G YVLL++IYA    WD V RV+ L+  + 
Sbjct: 451 SLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRE 510

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK PG S IE+  K++ F + D  +P+ ++++ +L  ++  +K  GY PQT++VL+D+ 
Sbjct: 511 LQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLD 570

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           +++K+  +  HSEKLAVAFGLI+T  G +I+I KNLR+C DCH+V K ISKF  R+IM+R
Sbjct: 571 QEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVR 630

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSCGDYW
Sbjct: 631 DLNRFHHFKDGVCSCGDYW 649



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 15/309 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  +++   V  AR +FD   ++ +  WN +    A  G  N+ L L+ RM    V 
Sbjct: 108 TKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVS 167

Query: 105 PNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   +L AC      +  L+ G+ IH++I        +V V T L++MY++ G + 
Sbjct: 168 SDRFTYTYLLKACVASECLVSFLQKGKEIHAHILR-HGYGAHVHVMTTLMDMYARFGCVS 226

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK--PSDITFIGLLSA 218
            A  VFD +  K+VV W++MI  YA +G   +AL+LF EM        P+ +T + +L A
Sbjct: 227 YASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQA 286

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA    + +G +  +       ++  +     ++ + +R G++E   +L+ D   + D V
Sbjct: 287 CAAFAALEQG-KLIHAYILRRGLDSILPVISALITMYARCGKLESG-QLIFDRMHKKDVV 344

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW----DGVARVR 334
           LW +L+ +  LHG      KI E +I      S +++   ++  A  +     +G     
Sbjct: 345 LWNSLISSYGLHGYGRKAIKIFEEMIDHGF--SPSHISFISVLGACSHTGLVEEGKKLFE 402

Query: 335 TLMKEKGVQ 343
           +++KE G+Q
Sbjct: 403 SMVKEHGIQ 411



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 45/307 (14%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I    + G   +AL L    L+ +  P + T   ++ +  +  +L     +H  + +
Sbjct: 42  NHLIQSLCKQGNLKQALYL----LSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
                 +  + T LINM+S+  ++ +AR VFD+   + + VWN++    A+ G G D L+
Sbjct: 98  G-GFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLE 156

Query: 196 LFNEMCRIRLKPSDITFIGLLSACA---------------HAGLVNEGR----RFFNTMK 236
           L+  M  + +     T+  LL AC                HA ++  G         T+ 
Sbjct: 157 LYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLM 216

Query: 237 DEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE-----PD 276
           D YA                   V  +  M+   ++ G+  EA +L  +M +      P+
Sbjct: 217 DMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPN 276

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRT 335
           SV   ++L AC     +  G+ I  Y++ + L +    +  L  +YA  G  +    +  
Sbjct: 277 SVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFD 336

Query: 336 LMKEKGV 342
            M +K V
Sbjct: 337 RMHKKDV 343


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/465 (44%), Positives = 315/465 (67%), Gaps = 1/465 (0%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           L+  Y R GD++ A +LF +MP++   S  +++  + K G++  A+ LF  M EK+VV W
Sbjct: 216 LIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSW 275

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
             M++G++Q+G   +AL  F  ML E   PN+ T V+ LSAC +IGAL++G  IH+Y+  
Sbjct: 276 TTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSG 335

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           +   K+N+ +GTAL++MY+KCG+++ A  VF    +K +++W+ MI G+A+HG  + ALQ
Sbjct: 336 N-GFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQ 394

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            F  M     KP  + F+ +L+AC+H+G VNEG +FF+ M+  Y IEP ++HY  +V++L
Sbjct: 395 YFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDML 454

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            RAG+++EA K +  M I PD V+WG L  ACR H N+ + E  ++ L+     + G+YV
Sbjct: 455 GRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYV 514

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYM 375
            LSN YA++G WD   RVR  M++ G  K+PG S IE+ +K+H F+AGD  H ++ EIY 
Sbjct: 515 FLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYS 574

Query: 376 MLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVK 435
            L+EI+   + +GY  + + VLH+I E++K+ +L  HSEKLA+AFG++ST+PGT+++IVK
Sbjct: 575 KLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVK 634

Query: 436 NLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           NLRVC DCH+  K  SK + R+I++RD  RFHHF +G CSCGDYW
Sbjct: 635 NLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/439 (46%), Positives = 298/439 (67%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAE 101
           LTT++  Y+   +   A  +FD++ + D V WNV+I     +    +AL +F  M   A+
Sbjct: 206 LTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTAD 265

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
             EP++VT + +L AC  +GALE G  +H+YIE        + +  +LI MYS+CG L+ 
Sbjct: 266 GFEPDDVTCLLLLQACANLGALEFGERVHNYIEE-HGYDGALNLCNSLITMYSRCGRLEK 324

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  +F R+++++VV W++MI G+AMHG+G++A++ F +M ++ + P D T  G+LSAC+H
Sbjct: 325 AYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSH 384

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            GLV++G  FF+ M   + IEP + HYGCMV+LL RAG +++AY+L+M M I+PDS LW 
Sbjct: 385 CGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWR 444

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           TLLGACR+H +  LGE++  +LI      +G YVLL NIY+++GNWD V  +R  MKEKG
Sbjct: 445 TLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKG 504

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +Q  PGCS+IEL  KVHEF+  D+ HP++ EIY ML+EI   LK  GYV +    LH++G
Sbjct: 505 IQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELHNLG 564

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            ++K N L  HSEKLA+AFG+++T PGT+I++ KNLR+C DCH   K++S    R++++R
Sbjct: 565 AEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREVVIR 624

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           DR RFHHF  G CSC  YW
Sbjct: 625 DRTRFHHFREGQCSCNGYW 643



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 5/219 (2%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +NVMI  Y+      +   L+R M    V PN +++  V+ +C +I +L  G  IH+ I 
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARIL 195

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
              +   N+ + T L+++YS C   ++A  VFD +   D V WN +I     +   +DAL
Sbjct: 196 RDGHQSDNLLL-TTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDAL 254

Query: 195 QLFNEMCRIR--LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           ++F+ M       +P D+T + LL ACA+ G +  G R  N + +E+  +  +     ++
Sbjct: 255 RMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYI-EEHGYDGALNLCNSLI 313

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            + SR G++E+AY +   M  E + V W  ++    +HG
Sbjct: 314 TMYSRCGRLEKAYSIFKRMD-ERNVVSWSAMISGFAMHG 351



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 32/182 (17%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D  L +  SL+ +Y+R G +  A  +F  M +R++VS + M                   
Sbjct: 303 DGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAM------------------- 343

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
                       I G+A HG   EA+  F +M    V P++ T   VLSAC   G ++ G
Sbjct: 344 ------------ISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDG 391

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYA 185
                 +     I+ N+     ++++  + G L  A +L+   V   D  +W +++    
Sbjct: 392 LMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDSTLWRTLLGACR 451

Query: 186 MH 187
           +H
Sbjct: 452 IH 453


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/469 (46%), Positives = 305/469 (65%), Gaps = 9/469 (1%)

Query: 20  YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           + R G  L    L    P         +L  YAK G+V A R LF+ + + D+  WN ++
Sbjct: 123 WLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSIL 182

Query: 80  DGYAQHG--------LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
             Y  +         L+ E L LF  M    ++ NEVT VA++SAC ++GAL  G W H 
Sbjct: 183 SAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHV 242

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           Y+    N+K+N  VGTALI+MYSKCG L  A  +FD++  +D + +N+MI G+A+HG+G 
Sbjct: 243 YVLK-HNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 301

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            AL LF +M    L P D+T +  + +C+H GLV EG   F +MK+ Y +EPK+EHYGC+
Sbjct: 302 QALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCL 361

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG++ EA + V++M ++P++V+W +LLGA R+HGN+ +GE + ++LI      S
Sbjct: 362 VDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS 421

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G YVLLSN+YA+I  WD V RVR LMK+ G+ K PG S +E+   +HEFL GD  HP+SK
Sbjct: 422 GNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSK 481

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
           EIY+ LEE++  L   G+ P+T  VL DI E++K+++L  HSE+LA+AF LI++     I
Sbjct: 482 EIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPI 541

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I+KNLRVC DCH   KLISK   R+I++RDRNRFHHF  G CSC DYW
Sbjct: 542 RIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 131/275 (47%), Gaps = 29/275 (10%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANE 90
           +F T P   ++ +++ +           A  +F+ +    +  +N +I   A      + 
Sbjct: 38  IFHTYPLSRILLISSTIV-------FTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHI 90

Query: 91  ALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           A  L+ R+L    ++PN  T  ++  ACG    L  GR +H+++        +  V  AL
Sbjct: 91  AFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFLEPTCDPFVQAAL 150

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK---------DALQLFNEM 200
           +N Y+KCG +   R +F++++  D+  WNS++  Y +H  G          + L LF EM
Sbjct: 151 LNYYAKCGKVGACRYLFNQISKPDLASWNSILSAY-VHNSGAICEDVSLSLEVLTLFIEM 209

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP--KVEHY--GCMVNLLS 256
            +  +K +++T + L+SACA  G +++G          Y ++   K+ H+    ++++ S
Sbjct: 210 QKSLIKANEVTLVALISACAELGALSQG-----AWAHVYVLKHNLKLNHFVGTALIDMYS 264

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + G ++ A +L  D     D++ +  ++G   +HG
Sbjct: 265 KCGCLDLACQL-FDQLPHRDTLCYNAMIGGFAIHG 298


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/475 (44%), Positives = 303/475 (63%), Gaps = 2/475 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           DK+    T+++  Y R G +  A +LF  MP + + +   M+  +   GEV  AR +FD 
Sbjct: 230 DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQ 289

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M+EKD   W+ +I  Y + G   EAL LF  M  E V PN  + +++LS CG + +L+ G
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +HS +  S +  +++ V + LI MY KCG L   + VFDR + KD+V+WNS+I GYA 
Sbjct: 350 RQVHSQLVRS-HFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQ 408

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HGFG+ AL++F+EM      P +ITFIG+LSAC + G V EG   F +MK +Y ++ K E
Sbjct: 409 HGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTE 468

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CMV+LL RAG++ EA  L+ +M +E D+++WG LL ACR H N+ L E  A+ L+  
Sbjct: 469 HYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQL 528

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL-AGDL 365
             +++G Y+LLSN+YA+   W  VA +R  M+ + V K PGCS IE+ NKVH F   G  
Sbjct: 529 EPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSA 588

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP+ + I   LE++   L+  GY P    V+HD+ E+ K +SL  HSEK+AVA+GL+  
Sbjct: 589 SHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKV 648

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             G  I+++KNLRVC DCH+  KLI++ TGR+I++RD NRFHHF +G CSC D+W
Sbjct: 649 PVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 19/256 (7%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A+KLF  MP+R+ +S   +++ Y K G ++ AR +FD M E++VV W  M+ GY Q GL 
Sbjct: 66  AQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLI 125

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           +EA +LF RM     E N V+   +L    + G ++  R +   I        +V   T 
Sbjct: 126 DEAELLFWRM----PEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK-----DVVASTN 176

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           +I      G L +AR +FD +  ++VV W SMI GYAM+     A +LF  M       +
Sbjct: 177 MIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMP----DKN 232

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           ++T+  +L     +G +NE    F  M     ++P     G M+      G+V +A + V
Sbjct: 233 EVTWTAMLKGYTRSGRINEAAELFKAM----PVKPVAACNG-MIMGFGLNGEVGKA-RWV 286

Query: 269 MDMKIEPDSVLWGTLL 284
            D   E D   W  L+
Sbjct: 287 FDQMKEKDDGTWSALI 302



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 18/280 (6%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G V  A +LF  +P + +V+ T M+     +G ++ AR +FD+M +++VV W  MI GYA
Sbjct: 154 GRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYA 213

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN- 142
            +   + A  LF  M     + NEVT  A+L      G   SGR I+   E  + + V  
Sbjct: 214 MNNKVDVARKLFEVM----PDKNEVTWTAMLK-----GYTRSGR-INEAAELFKAMPVKP 263

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V     +I  +   G +  AR VFD++ +KD   W+++I  Y   GF  +AL LF+ M R
Sbjct: 264 VAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQR 323

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQV 261
             ++P+  + I +LS C     ++ GR+  + + +  + ++  V     ++ +  + G +
Sbjct: 324 EGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVS--SVLITMYIKCGDL 381

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
               K V D     D V+W +++     HG    GEK  E
Sbjct: 382 VTG-KRVFDRFSSKDIVMWNSIIAGYAQHG---FGEKALE 417



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 160/340 (47%), Gaps = 24/340 (7%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           ++   +  +AR G +  A  +F  +  +++ S   ++  Y      A A+ LFD M E++
Sbjct: 18  ITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERN 77

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
            + WN ++ GY ++G+ +EA  +F +M     E N V+  +++    Q G ++    +  
Sbjct: 78  TISWNGLVSGYVKNGMISEARKVFDKM----PERNVVSWTSMVRGYVQEGLIDEAELLF- 132

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
                R  + NV   T ++    + G + +AR +FD +  KDVV   +MI G    G   
Sbjct: 133 ----WRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLS 188

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A ++F+EM +  +    + +  ++S  A    V+  R+ F  M D+  +      +  M
Sbjct: 189 EAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT-----WTAM 239

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           +   +R+G++ EA +L   M ++P +   G ++G   L+G +     + + +  +   + 
Sbjct: 240 LKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFG-LNGEVGKARWVFDQMKEK---DD 295

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI 351
           GT+  L  IY   G       + +LM+ +GV+  P   SI
Sbjct: 296 GTWSALIKIYERKGFELEALALFSLMQREGVR--PNFPSI 333



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D D+YVS+ L+ +Y + GD+++ +++F                            
Sbjct: 357 VRSHFDLDIYVSSVLITMYIKCGDLVTGKRVF---------------------------- 388

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
              D    KD+V WN +I GYAQHG   +AL +F  M +    P+E+T + VLSACG  G
Sbjct: 389 ---DRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTG 445

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G  I   +++   +    +    ++++  + G L +A  L+ +   + D +VW ++
Sbjct: 446 KVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 505

Query: 181 IVGYAMH 187
           +     H
Sbjct: 506 LSACRTH 512


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/474 (45%), Positives = 303/474 (63%), Gaps = 18/474 (3%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           YV T  +D+         A +LF +MP R++ S  TM+T Y + G++A AR  FD M ++
Sbjct: 307 YVQTKKMDI---------ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR 357

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D V W  +I GYAQ G   EAL +F  +  +    N  T    LS C  I ALE G+ IH
Sbjct: 358 DCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417

Query: 131 SYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
                 + +K+       VG AL+ MY KCGS+ +A   F+ + +KDVV WN+M+ GYA 
Sbjct: 418 G-----QAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HGFG+ AL +F  M    +KP +IT +G+LSAC+H GL++ G  +F +M  +Y + P  +
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSK 532

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CM++LL RAG++EEA  L+ +M  +P +  WG LLGA R+HGN  LGEK AE +   
Sbjct: 533 HYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              NSG YVLLSN+YAA G W    ++R+ M++ GVQK PG S +E+ NK+H F  GD  
Sbjct: 593 EPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCS 652

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+ + IY  LEE++  ++ EGYV  T++VLHD+ E++K++ L+ HSEKLAVAFG+++  
Sbjct: 653 HPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP 712

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G  I+++KNLRVC DCH+  K ISK  GR I++RD +RFHHF  G CSCGDYW
Sbjct: 713 GGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 146/323 (45%), Gaps = 33/323 (10%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y R      A  LF  MP+R L S   MLT Y +   +  AR LFD M EKDVV
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN ++ GYAQ+G  +EA  +F  M     E N ++   +L+A    G +E    +    
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFESK 199

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
            +   I  N  +G      + +   L DAR +FD++  +D + WN+MI GYA  G    A
Sbjct: 200 SDWDLISWNCLMGG-----FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 194 LQLFNEMCRIRLKPSD--ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            +LF+E       P+    T+  ++S     G+++E + FF+ M ++  +      Y  M
Sbjct: 255 RRLFDE------SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAM 303

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---- 307
           +    +  +++ A +L   M     S  W T++      G+IA   K  + +  ++    
Sbjct: 304 IAGYVQTKKMDIARELFESMPCRNISS-WNTMITGYGQIGDIAQARKFFDMMPQRDCVSW 362

Query: 308 ------LANSGTYVLLSNIYAAI 324
                  A SG Y    N++  I
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEI 385



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 131/280 (46%), Gaps = 19/280 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++DL+    ++  Y R   +  A +LF  MP++ +VS  ++L+ YA+ G V  AR +FD+
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M EK+ + WN ++  Y  +G   EA +LF      K + + ++   ++    +   L   
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           RW+   +     I  N      +I+ Y++ G L  AR +FD    +DV  W +M+ GY  
Sbjct: 224 RWLFDKMPVRDAISWNT-----MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQ 278

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G   +A   F+EM     + +++++  +++       ++  R  F +M         + 
Sbjct: 279 NGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NIS 329

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            +  M+    + G + +A K   DM  + D V W  ++  
Sbjct: 330 SWNTMITGYGQIGDIAQARKF-FDMMPQRDCVSWAAIIAG 368



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 42/221 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK       +V  +L+ +Y + G +  A   F  + ++ +VS  TML  YA+        
Sbjct: 421 VKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR-------- 472

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   +AL +F  M    V+P+E+T V VLSAC   G
Sbjct: 473 -----------------------HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509

Query: 122 ALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNS 179
            L+ G  + +S  ++   I  +    T +I++  + G L++A+ L+ +         W +
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHY-TCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGA 568

Query: 180 MIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +HG    G+ A ++       +++P +     LLS
Sbjct: 569 LLGASRIHGNTELGEKAAEMV-----FKMEPQNSGMYVLLS 604



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
           RV D D++ WN  I  +  +G    AL +FN M R     S +++  ++S        N 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPR----RSSVSYNAMISGYLRNSKFNL 98

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
            R  F+ M      E  +  +  M+    R  ++ +A +L  D+  E D V W +LL   
Sbjct: 99  ARNLFDQMP-----ERDLFSWNVMLTGYVRNCRLGDARRL-FDLMPEKDVVSWNSLLSGY 152

Query: 288 RLHGNIALGEKIAEYLISQN 307
             +G +    ++ + +  +N
Sbjct: 153 AQNGYVDEAREVFDNMPEKN 172


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/461 (46%), Positives = 296/461 (64%), Gaps = 1/461 (0%)

Query: 20  YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           YA+   +    +LF  MP  ++ S   M++ Y + G++A AR LFD M ++D V W  +I
Sbjct: 291 YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAII 350

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GYAQ+GL  EA+ +   M  +    N  T    LSAC  I ALE G+ +H  +  +   
Sbjct: 351 AGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT-GY 409

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           +    VG AL+ MY KCG + +A  VF  V  KD+V WN+M+ GYA HGFG+ AL +F  
Sbjct: 410 EKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFES 469

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M    +KP +IT +G+LSAC+H GL + G  +F++M  +Y I P  +HY CM++LL RAG
Sbjct: 470 MITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAG 529

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
            +EEA  L+ +M  EPD+  WG LLGA R+HGN+ LGE+ AE +      NSG YVLLSN
Sbjct: 530 CLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSN 589

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           +YAA G W  V+++R  M++ GVQK PG S +E+ NK+H F  GD  HP+   IY  LEE
Sbjct: 590 LYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEE 649

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           ++  +K EGYV  T++VLHD+ E++K++ L+ HSEKLAVAFG+++   G  I+++KNLRV
Sbjct: 650 LDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRV 709

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K ISK  GR I++RD +R+HHF  G CSC DYW
Sbjct: 710 CEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 33/356 (9%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y R      A  LF  MP + L S   MLT YA+   +  AR+LFD M EKDVV
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVV 127

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN M+ GY + G  +EA  +F RM       N ++   +L+A  + G LE  R +    
Sbjct: 128 SWNAMLSGYVRSGHVDEARDVFDRM----PHKNSISWNGLLAAYVRSGRLEEARRLFESK 183

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
            +   I  N  +G      Y K   L DAR +FD++  +D++ WN+MI GYA  G    A
Sbjct: 184 SDWELISCNCLMGG-----YVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQA 238

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
            +LF E   +R      T+  ++ A    G+++E RR F+ M  +  +      Y  M+ 
Sbjct: 239 RRLFEE-SPVR---DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMS-----YNVMIA 289

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
             ++  +++   +L  +M   P+   W  ++     +G++A    + + +  +   +S +
Sbjct: 290 GYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQNGDLAQARNLFDMMPQR---DSVS 345

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKG--VQKEPGC---------SSIELSNKVH 358
           +  +   YA  G ++    +   MK  G  + +   C         +++EL  +VH
Sbjct: 346 WAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVH 401



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 28/295 (9%)

Query: 1   TVKFSLDKDLYVSTSLVDL---------YARGGDVLSAEKLFATMPQRSLVSLTTMLTCY 51
             KFSL +DL+      DL         YAR   +  A  LF +MP++ +VS   ML+ Y
Sbjct: 77  NAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGY 136

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
            + G V  AR +FD M  K+ + WN ++  Y + G   EA    RR+   K +   ++  
Sbjct: 137 VRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEA----RRLFESKSDWELISCN 192

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            ++    +   L   R +   I     I  N      +I+ Y++ G L  AR +F+    
Sbjct: 193 CLMGGYVKRNMLGDARQLFDQIPVRDLISWNT-----MISGYAQDGDLSQARRLFEESPV 247

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           +DV  W +M+  Y   G   +A ++F+EM + R    ++++  +++  A    ++ GR  
Sbjct: 248 RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR----EMSYNVMIAGYAQYKRMDMGREL 303

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           F  M       P +  +  M++   + G + +A  L  DM  + DSV W  ++  
Sbjct: 304 FEEMP-----FPNIGSWNIMISGYCQNGDLAQARNL-FDMMPQRDSVSWAAIIAG 352



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 130/289 (44%), Gaps = 52/289 (17%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +DL    +++  YA+ GD+  A +LF   P R + + T M+  Y + G +  AR +FD+M
Sbjct: 217 RDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            +K  + +NVMI GYAQ+    + + + R +  E   PN                   G 
Sbjct: 277 PQKREMSYNVMIAGYAQY----KRMDMGRELFEEMPFPN------------------IGS 314

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           W         NI         +I+ Y + G L  AR +FD +  +D V W ++I GYA +
Sbjct: 315 W---------NI---------MISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQN 356

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++A+ +  EM R     +  TF   LSACA    +  G++    +     +    E 
Sbjct: 357 GLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQV-----VRTGYEK 411

Query: 248 YGC-----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            GC     +V +  + G ++EAY +   ++   D V W T+L     HG
Sbjct: 412 -GCLVGNALVGMYCKCGCIDEAYDVFQGVQ-HKDIVSWNTMLAGYARHG 458



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 35/203 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   +K   V  +LV +Y + G +  A  +F  +  + +VS  TML  YA+        
Sbjct: 405 VRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYAR-------- 456

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   +AL +F  M+   V+P+E+T V VLSAC   G
Sbjct: 457 -----------------------HGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTG 493

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
             + G      +     I  N +    +I++  + G L++A+ L+ +   + D   W ++
Sbjct: 494 LTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGAL 553

Query: 181 IVGYAMHG---FGKDALQLFNEM 200
           +    +HG    G+ A ++  +M
Sbjct: 554 LGASRIHGNMELGEQAAEMVFKM 576


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/474 (45%), Positives = 303/474 (63%), Gaps = 18/474 (3%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           YV T  +D+         A +LF +MP R++ S  TM+T Y + G++A AR  FD M ++
Sbjct: 307 YVQTKKMDI---------ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR 357

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D V W  +I GYAQ G   EAL +F  +  +    N  T    LS C  I ALE G+ IH
Sbjct: 358 DCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417

Query: 131 SYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
                 + +K+       VG AL+ MY KCGS+ +A   F+ + +KDVV WN+M+ GYA 
Sbjct: 418 G-----QAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR 472

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HGFG+ AL +F  M    +KP +IT +G+LSAC+H GL++ G  +F +M  +Y + P  +
Sbjct: 473 HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSK 532

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CM++LL RAG++EEA  L+ +M  +P +  WG LLGA R+HGN  LGEK AE +   
Sbjct: 533 HYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKM 592

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              NSG YVLLSN+YAA G W    ++R+ M++ GVQK PG S +E+ NK+H F  GD  
Sbjct: 593 EPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCS 652

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+ + IY  LEE++  ++ EGYV  T++VLHD+ E++K++ L+ HSEKLAVAFG+++  
Sbjct: 653 HPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP 712

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G  I+++KNLRVC DCH+  K ISK  GR I++RD +RFHHF  G CSCGDYW
Sbjct: 713 GGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 128/261 (49%), Gaps = 57/261 (21%)

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           + GL++ G  +F  M +EY++ P  +HY CM++LL R  ++EE                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGA R+HGN  LGEK A+        NSG                      + M++ 
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------SKMRDV 857

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GVQK PG S  E+ NK+H F  G L   + +E    LEE++  LK               
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG-LFLSRERENIGFLEELD--LKMR------------E 902

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKN-LRVCPDCHAVFKLISKFTGRKIM 459
            E++K+ +L+  SE LA A G+++   G   +++K  + VC DC +  K +SK  GR I 
Sbjct: 903 REEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD +RF+  +   CSCG+YW
Sbjct: 963 LRDSHRFNESI---CSCGEYW 980



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 163/358 (45%), Gaps = 37/358 (10%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y R      A  LF  MP+R L S   MLT Y +   +  AR LFD M EKDVV
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN ++ GYAQ+G  +EA  +F  M     E N ++   +L+A    G +E    +    
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFESK 199

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
            +   I  N  +G      + +   L DAR +FD++  +D + WN+MI GYA  G    A
Sbjct: 200 SDWDLISWNCLMGG-----FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 194 LQLFNEMCRIRLKPSD--ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            +LF+E       P+    T+  ++S     G+++E + FF+ M ++  +      Y  M
Sbjct: 255 RRLFDE------SPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAM 303

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           +    +  +++ A +L   M     S  W T++      G+IA   K  + +  ++    
Sbjct: 304 IAGYVQTKKMDIARELFESMPCRNISS-WNTMITGYGQIGDIAQARKFFDMMPQRDCV-- 360

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV---QKEPGC--------SSIELSNKVH 358
            ++  +   YA  G+++    +   +K+ G    +   GC        +++EL  ++H
Sbjct: 361 -SWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIH 417



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 131/280 (46%), Gaps = 19/280 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++DL+    ++  Y R   +  A +LF  MP++ +VS  ++L+ YA+ G V  AR +FD+
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M EK+ + WN ++  Y  +G   EA +LF      K + + ++   ++    +   L   
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           RW+   +     I  N      +I+ Y++ G L  AR +FD    +DV  W +M+ GY  
Sbjct: 224 RWLFDKMPVRDAISWNT-----MISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQ 278

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G   +A   F+EM     + +++++  +++       ++  R  F +M         + 
Sbjct: 279 NGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-----NIS 329

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            +  M+    + G + +A K   DM  + D V W  ++  
Sbjct: 330 SWNTMITGYGQIGDIAQARKF-FDMMPQRDCVSWAAIIAG 368



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 35/203 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK       +V  +L+ +Y + G +  A   F  + ++ +VS  TML  YA+        
Sbjct: 421 VKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYAR-------- 472

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   +AL +F  M    V+P+E+T V VLSAC   G
Sbjct: 473 -----------------------HGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            L+ G      +     +    +  T +I++  + G L++A+ L+ +         W ++
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGAL 569

Query: 181 IVGYAMHG---FGKDALQLFNEM 200
           +    +HG    G+ A ++  +M
Sbjct: 570 LGASRIHGNTELGEKAAEMVFKM 592



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
           RV D D++ WN  I  +  +G    AL +FN M R     S +++  ++S        N 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPR----RSSVSYNAMISGYLRNSKFNL 98

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
            R  F+ M      E  +  +  M+    R  ++ +A +L  D+  E D V W +LL   
Sbjct: 99  ARNLFDQMP-----ERDLFSWNVMLTGYVRNCRLGDARRL-FDLMPEKDVVSWNSLLSGY 152

Query: 288 RLHGNIALGEKIAEYLISQN 307
             +G +    ++ + +  +N
Sbjct: 153 AQNGYVDEAREVFDNMPEKN 172


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 300/437 (68%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++++ Y+K   V  A  +F +++ K VV WN MI GYAQ+G  NEAL LF  M +  +
Sbjct: 382 MNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDI 441

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+V++A   +      +WIH     +   K NV V TALI+ ++KCG+++ AR
Sbjct: 442 KPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDK-NVFVCTALIDTHAKCGAIQTAR 500

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD + ++ V+ WN+MI GY  +G G++AL LFNEM    +KP++ITF+ +++AC+H+G
Sbjct: 501 KLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSG 560

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG  +F +MK+ Y +EP ++HYG MV+LL RAG++++A+K + DM ++P   + G +
Sbjct: 561 LVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAM 620

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LGEK A+ L   +  + G +VLL+N+YA+   WD VARVRT M++KG+Q
Sbjct: 621 LGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQ 680

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS +EL N+VH F +G   HP+SK IY  LE +   +KA GYVP T  + HD+ E 
Sbjct: 681 KTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEED 739

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  L  HSE+LA+AFGL++T+ GT+I I KNLRVC DCH   K IS  TGR+I++RD 
Sbjct: 740 VKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDL 799

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF NG CSCGDYW
Sbjct: 800 RRFHHFKNGICSCGDYW 816



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 145/290 (50%), Gaps = 44/290 (15%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ML  Y K G V +AR++F  M  ++VV WN MIDGYAQ+G + EA   F +ML E VE
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  V+ +  L AC  +G LE GR++H  ++  + I  +V V  +LI+MYSKC  +  A  
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVHRLLD-EKKIGFDVSVMNSLISMYSKCKRVDIAAS 400

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA---- 220
           VF  +  K VV WN+MI+GYA +G   +AL LF EM    +KP   T + +++A A    
Sbjct: 401 VFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSV 460

Query: 221 -----------------------------HA--GLVNEGRRFFNTMKDEYAIEPKVEHYG 249
                                        HA  G +   R+ F+ M++ + I      + 
Sbjct: 461 TRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WN 515

Query: 250 CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG 296
            M++     G   EA  L  +M+   ++P+ + + +++ AC   G +  G
Sbjct: 516 AMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG 565



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 143/247 (57%), Gaps = 3/247 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q +L ++T ++  YAK  ++  A  +F+ M ++D+V WN ++ GYAQ+G A  A+ +  +
Sbjct: 174 QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQ 233

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M     +P+ +T V+VL A   + AL  GR IH Y   +   +  V V TA+++ Y KCG
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRA-GFEYMVNVATAMLDTYFKCG 292

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S++ ARLVF  ++ ++VV WN+MI GYA +G  ++A   F +M    ++P++++ +G L 
Sbjct: 293 SVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALH 352

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           ACA+ G +  G R+ + + DE  I   V     ++++ S+  +V+ A  +  ++K     
Sbjct: 353 ACANLGDLERG-RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLK-HKTV 410

Query: 278 VLWGTLL 284
           V W  ++
Sbjct: 411 VTWNAMI 417



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
           T+  +++   T ++  +AK G +  AR LFD M+E+ V+ WN MIDGY  +G   EAL L
Sbjct: 474 TLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDL 533

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F  M    V+PNE+T ++V++AC   G +E G +    ++ +  ++  +    A++++  
Sbjct: 534 FNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLG 593

Query: 155 KCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
           + G L DA + + D      + V  +M+    +H
Sbjct: 594 RAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIH 627



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           T LI+++ K  S+ +A  VF+ V  K  V++++M+ GYA +   +DA++ +  M    + 
Sbjct: 80  TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P    F  LL        +  GR   + M      +  +     +VNL ++  Q+E+AYK
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGRE-IHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYK 198

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHG 291
           +   M  + D V W T++     +G
Sbjct: 199 MFERMP-QRDLVSWNTVVAGYAQNG 222


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/516 (42%), Positives = 313/516 (60%), Gaps = 38/516 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE----- 56
           VK  LD +L++  +LV +Y + G +  A K+   MP R +VS  +M+  YA+ G+     
Sbjct: 164 VKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDAL 223

Query: 57  --------------------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
                                           V     +F+ M +K+++ WNVMI  Y  
Sbjct: 224 EICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVN 283

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + + NEA+ LF +M    ++P+ VT  ++L ACG + AL  GR +H YIE   N++ N+ 
Sbjct: 284 NSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKG-NLRPNLL 342

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  AL++MY+KCG L++AR VFD++  +DVV W SM+  Y   G G DA+ LF +M    
Sbjct: 343 LENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSG 402

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             P  I F+ +LSAC+H GL+++GR +F  M ++Y I P++EH+ CMV+L  RAG+VEEA
Sbjct: 403 QNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEA 462

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y  +  M +EP+  +WG LL ACR+H  + +G   A+ L       SG YVLLSNIYA  
Sbjct: 463 YSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKA 522

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W  V  VR  MK+ G++K PG S++EL+ +VH FLAGD  HP++K IY  L+ + G +
Sbjct: 523 GMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKM 582

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
           K  GY+PQT+  LHD+  + K+  L +HSEKLA+ F +++T+ GT I+I KNLRVC DCH
Sbjct: 583 KELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCH 642

Query: 445 AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              KLISK   R I++RD NRFHHF NG CSCGDYW
Sbjct: 643 IAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 7/265 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+ QGE + AR +FD   EK+VV +NVMI  Y  + L  EAL +F+ ML+    P+
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC  +  L  G  +H  I     +  N+ +G AL+ MY KCG L++AR V 
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKV-GLDTNLFIGNALVAMYGKCGCLREARKVL 195

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D++  +DVV WNSM+ GYA  G   DAL++  EM  + L     T   L     +  L  
Sbjct: 196 DQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL-- 253

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
           E  ++ + M  E   +  +  +  M+ +        EA  L + M+   ++PD+V   +L
Sbjct: 254 ENVQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASL 312

Query: 284 LGACRLHGNIALGEKIAEYLISQNL 308
           L AC     + LG ++ +Y+   NL
Sbjct: 313 LPACGDLSALFLGRRLHKYIEKGNL 337



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 10/274 (3%)

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           + C   +++     G+ +   + F R+   KVE     A  V+    Q   +++   +HS
Sbjct: 5   IFCTRQILNSNKFRGIVSSTRIRFDRL---KVEVFSKEACEVI--LDQYPGIKTLNKLHS 59

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
            I  + +++++  +   L+  YS  G    AR +FDR  +K+VV +N MI  Y  +    
Sbjct: 60  KIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYV 119

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +AL +F  M      P   TF  +L AC+    +  G +  + +  +  ++  +     +
Sbjct: 120 EALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIV-KVGLDTNLFIGNAL 178

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-N 310
           V +  + G + EA K V+D     D V W +++      G      +I + + S NL  +
Sbjct: 179 VAMYGKCGCLREARK-VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHD 237

Query: 311 SGTYVLLSNI--YAAIGNWDGVARVRTLMKEKGV 342
           +GT   LS +  Y ++ N   +  +   M +K +
Sbjct: 238 AGTMASLSPVVCYTSLENVQYIHNMFERMTKKNL 271


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 305/475 (64%), Gaps = 2/475 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK     + YV  +L+ LY +   + S  ++F  M  +  VS  + ++   +      AR
Sbjct: 445 VKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEAR 504

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F++M   DVV W  +I   AQ    NEA+ +FR ML E+  PN      +L   G +G
Sbjct: 505 DVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLG 564

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A + G+ IH+ I     +   + V  AL++MY KC S  D+  VFD + ++D+  WN++I
Sbjct: 565 APQLGQQIHT-IAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTII 622

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG G++A++++  M    + P+++TF+GLL AC+H+GLV+EG +FF +M  +Y +
Sbjct: 623 TGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGL 682

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P +EHY CMV+LL RAG V+ A   + DM IEPDSV+W  LLGAC++H N+ +G + AE
Sbjct: 683 TPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAE 742

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L S   +N+G YV+LSNIY++ G WD VA+VR LMKE+GV K+PGCS +++ NK+H F+
Sbjct: 743 KLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFV 802

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  H + + IY  L E+   LKA GYVP T  VLHDI E+QK++SL  HSEKLAVA+G
Sbjct: 803 TGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYG 862

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           L+ T  G  I+I+KNLR+C DCH   K +S  T R+I +RD NRFHHF NG+CSC
Sbjct: 863 LLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 36/262 (13%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           ++ Y  ++++   ++ G +  A  ++   P +S+ S T+MLT  A+ G +  A++LFD +
Sbjct: 288 RNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQI 347

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRM----------LAEKVEPNEVTAVAVLS-- 115
            E +VV WN MI GY Q+ + +EA  LF RM          +      N  +  A++S  
Sbjct: 348 HEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQ 407

Query: 116 -------------------ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
                              AC  I ALE+G+ +HS    +   + N  V  ALI +Y K 
Sbjct: 408 ALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKA-GCQFNSYVCNALITLYGKY 466

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            S+   R +FDR+  KD V +NS +     +    +A  +FN M      P  +++  ++
Sbjct: 467 RSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP----SPDVVSWTTII 522

Query: 217 SACAHAGLVNEGRRFFNTMKDE 238
           SACA A   NE    F +M  E
Sbjct: 523 SACAQADQGNEAVEIFRSMLHE 544



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 28/286 (9%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           ++V  Y + GD+  A KLF  MP R + S  TMLT Y     +  AR LF+ M E++ V 
Sbjct: 131 AMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVS 190

Query: 75  WNVMIDGYA---QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC---GQIGALESGRW 128
           W VMI GY    QHG A +   +FR ML E + P +   V+VLSA    G+ G LES   
Sbjct: 191 WTVMISGYVLIEQHGRAWD---MFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILES--- 244

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL-VFDRVNDKDVVVWNSMIVGYAMH 187
           IH  +  +   + +V VGTA++N Y+K  ++ D+ +  F+ +  ++   W+++I   +  
Sbjct: 245 IHVLVHKT-GFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQA 303

Query: 188 GFGKDALQLFNEMCRIRLK--PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           G   DA  ++    R  LK  PS  +   +L+  A  G +++ +  F+ +      EP V
Sbjct: 304 GRIDDAFAVYQ---RDPLKSVPSRTS---MLTGLARYGRIDDAKILFDQIH-----EPNV 352

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             +  M+    +   V+EA  L   M    +++ W  ++     +G
Sbjct: 353 VSWNAMITGYMQNEMVDEAEDLFNRMPFR-NTISWAGMIAGYARNG 397



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 111/250 (44%), Gaps = 50/250 (20%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
            + G +  AR +FD M  +D++ WN MI  Y  +G+ +       R LA+          
Sbjct: 44  GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG-----RSLAD---------- 88

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
                     A+  G               N++ GT L++ Y++ G ++DAR VFD +  
Sbjct: 89  ----------AISGG---------------NLRTGTILLSGYARAGRVRDARRVFDGMGV 123

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DI-TFIGLLSACAHAGLVNEGR 229
           ++ V WN+M+  Y  +G    A +LF+ M      PS D+ ++  +L+   H+ L+ E R
Sbjct: 124 RNTVAWNAMVTCYVQNGDITLARKLFDAM------PSRDVSSWNTMLTGYCHSQLMEEAR 177

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
             F  M +   +   V   G +  L+ + G+  + ++ ++   + P+     ++L A R 
Sbjct: 178 NLFERMPERNGVSWTVMISGYV--LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRH 235

Query: 290 HGNIALGEKI 299
            G   + E I
Sbjct: 236 LGKPGILESI 245



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 26/212 (12%)

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           +A I    + G L +AR VFD +  +D++ WNSMI  Y  +G       L + +    L+
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
              I    LLS  A AG V + RR F+ M     +      +  MV    + G +  A K
Sbjct: 97  TGTI----LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLARK 147

Query: 267 LVMDMKIEPDSVLWGTLL-GACRLHGNIA-----LGEKIAEYL-ISQNLANSGTYVLLSN 319
           L  D     D   W T+L G C  H  +      L E++ E   +S  +  SG YVL+  
Sbjct: 148 L-FDAMPSRDVSSWNTMLTGYC--HSQLMEEARNLFERMPERNGVSWTVMISG-YVLIEQ 203

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI 351
              A   WD     RT++ E    ++P   S+
Sbjct: 204 HGRA---WD---MFRTMLCEGMTPEQPNLVSV 229


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/481 (45%), Positives = 322/481 (66%), Gaps = 8/481 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAA 60
           L+ DL    SL  + A+  D  ++  +   + +R     ++V    ++  YAK G + +A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQ 119
             +F+ +  KDVV WN +I GY Q+GLA+EA+ ++R M    +++ N+ T V++L+A   
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAH 489

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G  IH ++  + N+ ++V VGT LI++Y KCG L DA  +F +V  +  V WN+
Sbjct: 490 VGALQQGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNA 548

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I  + +HG G+ AL+LF EM    +KP  +TFI LLSAC+H+GLV+EG+ FF+ M+ EY
Sbjct: 549 IISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EY 607

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P ++HYGCMV+LL RAG +E AY  + DM + PD+ +WG LLGACR+HGNI LG+  
Sbjct: 608 GIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFA 667

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           ++ L   +  N G YVLLSNIYA +G W+GV +VR+L +E+G++K PG SSIE++ +V  
Sbjct: 668 SDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDI 727

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F  G+  HPK KEIY  L  +   +K+ GY+P    VL D+ E +K++ L  HSE+LA+A
Sbjct: 728 FYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIA 787

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+IST P ++I+I KNLRVC DCH   K IS+ T R+I++RD  RFHHF NG CSCGDY
Sbjct: 788 FGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDY 847

Query: 480 W 480
           W
Sbjct: 848 W 848



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 141/286 (49%), Gaps = 10/286 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++  Y++ G V  AR LFDDM  +D+  WN MI G  Q+G A +AL +   M  E + 
Sbjct: 211 ASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIN 270

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            + VT  ++L  C Q+G + +   IH Y+     ++  + V  ALINMY+K G+L DA+ 
Sbjct: 271 MDSVTVASILPVCAQLGDISTATLIHLYVIK-HGLEFELFVSNALINMYAKFGNLGDAQK 329

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF ++  +DVV WNS+I  Y  +     A   F +M    L+P  +T + L S  A +  
Sbjct: 330 VFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRD 389

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
               R      M+  + +E  V     M ++ ++ G ++ A+K V ++    D V W TL
Sbjct: 390 YKNSRSVHGFIMRRGWLMEAVVIGNAVM-DMYAKLGVIDSAHK-VFNLIPVKDVVSWNTL 447

Query: 284 LGACRLHGNIALGEKIAEYLISQNLA----NSGTYVLLSNIYAAIG 325
           +     +G     E I  Y + +       N GT+V +   YA +G
Sbjct: 448 ISGYTQNG--LASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVG 491



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 153/300 (51%), Gaps = 14/300 (4%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGEVAAAR 61
           ++ D     S++ + A+ GD+ +A  +   + +      L     ++  YAK G +  A+
Sbjct: 269 INMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQ 328

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F  M  +DVV WN +I  Y Q+     A   F +M    +EP+ +T V++ S   Q  
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             ++ R +H +I     +   V +G A+++MY+K G +  A  VF+ +  KDVV WN++I
Sbjct: 389 DYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLI 448

Query: 182 VGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDE 238
            GY  +G   +A++++  M  CR  +K +  T++ +L+A AH G + +G R   + +K  
Sbjct: 449 SGYTQNGLASEAIEVYRMMEECR-EIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTN 507

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
             ++  V    C+++L  + G++ +A  L   +  E  SV W  ++    +HG+   GEK
Sbjct: 508 LHLDVFVG--TCLIDLYGKCGRLVDAMCLFYQVPRE-SSVPWNAIISCHGIHGH---GEK 561



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 127/254 (50%), Gaps = 16/254 (6%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL-VLFR 96
           Q + +S+  ++  YA  G+V+ +R  FD ++ KDV  WN MI  Y ++G   EA+   ++
Sbjct: 106 QSNFISIR-LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQ 164

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            +L  K + +  T   VL AC     L  GR IH ++      + +V V  +LI+MYS+ 
Sbjct: 165 LLLVTKFQADFYTFPPVLKACQ---TLVDGRKIHCWVFK-LGFQWDVFVAASLIHMYSRF 220

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G +  AR +FD +  +D+  WN+MI G   +G    AL + +EM    +    +T   +L
Sbjct: 221 GFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASIL 280

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMK 272
             CA  G ++       T+   Y I+  +E        ++N+ ++ G + +A K+   M 
Sbjct: 281 PVCAQLGDISTA-----TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMF 335

Query: 273 IEPDSVLWGTLLGA 286
           +  D V W +++ A
Sbjct: 336 LR-DVVSWNSIIAA 348



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 39/191 (20%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K +L  D++V T L+DLY + G ++ A  LF  +P+ S V    +++C+   G      
Sbjct: 504 IKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHG------ 557

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   +AL LFR M  E V+P+ VT +++LSAC   G
Sbjct: 558 -----------------------HG--EKALKLFREMQDEGVKPDHVTFISLLSACSHSG 592

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVVW 177
            ++ G+W   ++     IK +++    ++++  + G L+   + +D + D     D  +W
Sbjct: 593 LVDEGKWFF-HLMQEYGIKPSLKHYGCMVDLLGRAGFLE---MAYDFIKDMPLHPDASIW 648

Query: 178 NSMIVGYAMHG 188
            +++    +HG
Sbjct: 649 GALLGACRIHG 659


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/442 (46%), Positives = 299/442 (67%), Gaps = 1/442 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R +  +  ++T Y K G +  AR LF D+  +DVV W  M+ GYAQ G  +EA+ LFRRM
Sbjct: 331 REIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRM 390

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             + ++P+++T  + L++C     L+ G+ IH  + ++    ++V + +AL++MY+KCGS
Sbjct: 391 QQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHA-GYSLDVYLQSALVSMYAKCGS 449

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           + DARLVF+++++++VV W +MI G A HG  ++AL+ F +M +  +KP  +TF  +LSA
Sbjct: 450 MDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSA 509

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C H GLV EGR+ F +M  +Y I+P VEHY C V+LL RAG +EEA  +++ M  +P   
Sbjct: 510 CTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPS 569

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +WG LL ACR+H ++  GE+ AE ++  +  + G YV LSNIYAA G ++   +VR +M+
Sbjct: 570 VWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVME 629

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           ++ V KEPG S IE+  KVH F   D  HP++KEIY  L ++   +K +GYVP T+ VLH
Sbjct: 630 KRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLH 689

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           D+ E+QK  +L  HSE+LA+ +GL+ T PGT I+IVKNLRVC DCH   K ISK  GR+I
Sbjct: 690 DVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREI 749

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           + RD +RFHHFV+G CSCGD+W
Sbjct: 750 IARDAHRFHHFVDGVCSCGDFW 771



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 143/248 (57%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK G+++ A+V+FD + EK+VV W ++I GYAQ G  + AL L  +M   +V 
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN++T  ++L  C    ALE G+ +H YI  S      + V  ALI MY KCG LK+AR 
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQS-GYGREIWVVNALITMYCKCGGLKEARK 354

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +  +DVV W +M+ GYA  GF  +A+ LF  M +  +KP  +TF   L++C+    
Sbjct: 355 LFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAF 414

Query: 225 VNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + EG+     +    Y+++  ++    +V++ ++ G +++A +LV +   E + V W  +
Sbjct: 415 LQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDA-RLVFNQMSERNVVAWTAM 471

Query: 284 LGACRLHG 291
           +  C  HG
Sbjct: 472 ITGCAQHG 479



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 139/264 (52%), Gaps = 7/264 (2%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           +G +V +A       P R L +  T+L+ YAK G +  AR +FD + ++++V W  MI+ 
Sbjct: 114 QGREVHAAILKSGIQPNRYLEN--TLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEA 171

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           +       EA   +  M     +P++VT V++L+A      L+ G+ +H  I  +  +++
Sbjct: 172 FVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKA-GLEL 230

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
             +VGT+L+ MY+KCG +  A+++FD++ +K+VV W  +I GYA  G    AL+L  +M 
Sbjct: 231 EPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQ 290

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
           +  + P+ IT+  +L  C     +  G++     ++  Y  E  V     ++ +  + G 
Sbjct: 291 QAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV--VNALITMYCKCGG 348

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EA KL  D+    D V W  ++
Sbjct: 349 LKEARKLFGDLP-HRDVVTWTAMV 371



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 6/234 (2%)

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
           + G   EAL +   M+ +           +L  C ++ +LE GR +H+ I  S  I+ N 
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKS-GIQPNR 131

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +   L++MY+KCGSL DAR VFD + D+++V W +MI  +       +A + +  M   
Sbjct: 132 YLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLA 191

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             KP  +TF+ LL+A  +  L+  G++      K    +EP+V     +V + ++ G + 
Sbjct: 192 GCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDIS 249

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYV 315
           +A +++ D   E + V W  L+      G + +  ++ E +    +A N  TY 
Sbjct: 250 KA-QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYT 302


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/516 (42%), Positives = 313/516 (60%), Gaps = 38/516 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE----- 56
           VK  LD +L++  +LV +Y + G +  A K+   MP R +VS  +M+  YA+ G+     
Sbjct: 164 VKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDAL 223

Query: 57  --------------------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
                                           V     +F+ M +K+++ WNVMI  Y  
Sbjct: 224 EICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVN 283

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + + NEA+ LF +M    ++P+ VT  ++L ACG + AL  GR +H YIE   N++ N+ 
Sbjct: 284 NSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKG-NLQPNLL 342

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  AL++MY+KCG L++AR VFD++  +DVV W SM+  Y   G G DA+ LF +M    
Sbjct: 343 LENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSG 402

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             P  I F+ +LSAC+H GL+++GR +F  M ++Y I P++EH+ CMV+L  RAG+VEEA
Sbjct: 403 QNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEA 462

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y  +  M +EP+  +WG LL ACR+H  + +G   A+ L       SG YVLLSNIYA  
Sbjct: 463 YSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKA 522

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W  V  VR  MK+ G++K PG S++EL+ +VH FLAGD  HP++K IY  L+ + G +
Sbjct: 523 GMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKM 582

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
           K  GY+PQT+  LHD+  + K+  L +HSEKLA+ F +++T+ GT I+I KNLRVC DCH
Sbjct: 583 KELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCH 642

Query: 445 AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              KLISK   R I++RD NRFHHF NG CSCGDYW
Sbjct: 643 IAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 7/265 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+ QGE + AR +FD   EK+VV +NVMI  Y  + L  EAL +F+ ML+    P+
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC  +  L  G  +H  I     +  N+ +G AL+ MY KCG L++AR V 
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKV-GLDTNLFIGNALVAMYGKCGCLREARKVL 195

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D++  +DVV WNSM+ GYA  G   DAL++  EM  + L     T   L     +  L  
Sbjct: 196 DQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSL-- 253

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
           E  ++ + M  E   +  +  +  M+ +        EA  L + M+   ++PD+V   +L
Sbjct: 254 ENVQYIHNMF-ERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASL 312

Query: 284 LGACRLHGNIALGEKIAEYLISQNL 308
           L AC     + LG ++ +Y+   NL
Sbjct: 313 LPACGDLSALFLGRRLHKYIEKGNL 337



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 120/274 (43%), Gaps = 10/274 (3%)

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           + C   +++     G  +   + F R+   KVE     A  V+    Q   +++   +HS
Sbjct: 5   IFCTRQILNSNKFRGFVSLTRIRFDRL---KVEVFSKEACEVI--LDQYPGIKTLNKLHS 59

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
            I  + +++++  +   L+  YS  G    AR +FDR  +K+VV +N MI  Y  +    
Sbjct: 60  KIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYV 119

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +AL +F  M      P   TF  +L AC+    +  G +  + +  +  ++  +     +
Sbjct: 120 EALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIV-KVGLDTNLFIGNAL 178

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-N 310
           V +  + G + EA K V+D     D V W +++      G      +I + + S NL  +
Sbjct: 179 VAMYGKCGCLREARK-VLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHD 237

Query: 311 SGTYVLLSNI--YAAIGNWDGVARVRTLMKEKGV 342
           +GT   LS +  Y ++ N   +  +   M +K +
Sbjct: 238 AGTMASLSPVVCYTSLENVQYIHNMFERMTKKNL 271


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 305/440 (69%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+SL TM   YAK G+VA A++LFD M+  +++ WN MI GYA++G A EA+ +F  M+ 
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + V P+ ++  + +SAC Q+G+LE  R ++ Y+  S + + +V + +ALI+M++KCGS++
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS-DYRDDVFISSALIDMFAKCGSVE 375

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            ARLVFDR  D+DVVVW++MIVGY +HG  ++A+ L+  M R  + P+D+TF+GLL AC 
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+G+V EG  FFN M D + I P+ +HY C+++LL RAG +++AY+++  M ++P   +W
Sbjct: 436 HSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC+ H ++ LGE  A+ L S + +N+G YV LSN+YAA   WD VA VR  MKEK
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ GCS +E+  ++  F  GD  HP+ +EI   +E I   LK  G+V      LHD+
Sbjct: 555 GLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDL 614

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +++ + +L  HSE++A+A+GLIST  GT ++I KNLR C +CHA  KLISK   R+I++
Sbjct: 615 NDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVV 674

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF +G CSCGDYW
Sbjct: 675 RDTNRFHHFKDGVCSCGDYW 694



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 130/244 (53%), Gaps = 7/244 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++   +  G++  AR +FDD+    +  WN +I GY+++    +AL+++  M   +V
Sbjct: 56  ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T   +L AC  +  L+ GR++H+ +        +V V   LI +Y+KC  L  AR
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 164 LVFD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            VF+   + ++ +V W +++  YA +G   +AL++F++M ++ +KP  +  + +L+A   
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234

Query: 222 AGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
              + +GR    + +K    IEP +     +  + ++ GQV  A K++ D    P+ +LW
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATA-KILFDKMKSPNLILW 291

Query: 281 GTLL 284
             ++
Sbjct: 292 NAMI 295


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/484 (44%), Positives = 322/484 (66%), Gaps = 14/484 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           ++ D +    L+       DV   E + + + +    SL     ++L  YA  G+VA+A 
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M EKD+V WN +I+G+A++G   EAL L+  M ++ ++P+  T V++LSAC +IG
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236

Query: 122 ALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           AL  G+ +H Y+     IKV    N+     L+++Y++CG +++A+ +FD + DK+ V W
Sbjct: 237 ALTLGKRVHVYM-----IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            S+IVG A++GFGK+A++LF  M     L P +ITF+G+L AC+H G+V EG  +F  M+
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 351

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +EY IEP++EH+GCMV+LL+RAGQV++AY+ +  M ++P+ V+W TLLGAC +HG+  L 
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E     ++     +SG YVLLSN+YA+   W  V ++R  M   GV+K PG S +E+ N+
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNR 471

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEFL GD  HP+S  IY  L+E+ G L++EGYVPQ   V  D+ E++K+N++  HSEK+
Sbjct: 472 VHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKI 531

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AF LIST   + I +VKNLRVC DCH   KL+SK   R+I++RDR+RFHHF NG+CSC
Sbjct: 532 AIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSC 591

Query: 477 GDYW 480
            DYW
Sbjct: 592 QDYW 595



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRM-LAE 101
           L   L        ++ A  +F  +E+  +V  WN +I GYA+ G +  A  L+R M ++ 
Sbjct: 56  LIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSG 115

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            VEP+  T   ++ A   +  +  G  IHS +  S      + V  +L+++Y+ CG +  
Sbjct: 116 LVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVAS 174

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VFD++ +KD+V WNS+I G+A +G  ++AL L+ EM    +KP   T + LLSACA 
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 234

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            G +  G+R    M  +  +   +     +++L +R G+VEEA K + D  ++ +SV W 
Sbjct: 235 IGALTLGKRVHVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEA-KTLFDEMVDKNSVSWT 292

Query: 282 TLLGACRLHG 291
           +L+    ++G
Sbjct: 293 SLIVGLAVNG 302



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 35/209 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L+ S  L+DLYAR G V  A+ LF                            
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF---------------------------- 280

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
              D+M +K+ V W  +I G A +G   EA+ LF+ M + E + P E+T V +L AC   
Sbjct: 281 ---DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 337

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +     I+  ++    ++++ ++ G +K A   +       +VV+W +
Sbjct: 338 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 397

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           ++    +H  G   L  F  +  ++L+P+
Sbjct: 398 LLGACTVH--GDSDLAEFARIQILQLEPN 424



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 57/223 (25%)

Query: 162 ARLVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSA 218
           A  VF ++    +V +WN++I GYA  G    A  L+ EM R+   ++P   T+  L+ A
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREM-RVSGLVEPDTHTYPFLIKA 130

Query: 219 C-----------------------------------AHAGLVNEGRRFFNTMKDEYAIEP 243
                                               A+ G V    + F+ M ++  +  
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA- 189

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIA 300
               +  ++N  +  G+ EEA  L  +M    I+PD     +LL AC   G + LG+++ 
Sbjct: 190 ----WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVH 245

Query: 301 EYLI----SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
            Y+I    ++NL +S    +L ++YA  G    V   +TL  E
Sbjct: 246 VYMIKVGLTRNLHSSN---VLLDLYARCGR---VEEAKTLFDE 282


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 305/440 (69%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+SL TM   YAK G+VA A++LFD M+  +++ WN MI GYA++G A EA+ +F  M+ 
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + V P+ ++  + +SAC Q+G+LE  R ++ Y+  S + + +V + +ALI+M++KCGS++
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS-DYRDDVFISSALIDMFAKCGSVE 375

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            ARLVFDR  D+DVVVW++MIVGY +HG  ++A+ L+  M R  + P+D+TF+GLL AC 
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+G+V EG  FFN M D + I P+ +HY C+++LL RAG +++AY+++  M ++P   +W
Sbjct: 436 HSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC+ H ++ LGE  A+ L S + +N+G YV LSN+YAA   WD VA VR  MKEK
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ GCS +E+  ++  F  GD  HP+ +EI   +E I   LK  G+V      LHD+
Sbjct: 555 GLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDL 614

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +++ + +L  HSE++A+A+GLIST  GT ++I KNLR C +CHA  KLISK   R+I++
Sbjct: 615 NDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVV 674

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF +G CSCGDYW
Sbjct: 675 RDTNRFHHFKDGVCSCGDYW 694



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 129/244 (52%), Gaps = 7/244 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++   +  G++  AR +FDD+    +  WN +I GY+++    +AL+++  M   +V
Sbjct: 56  ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T   +L AC  +  L+ GR++H+ +        +V V   LI +Y+KC  L  AR
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 164 LVFD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            VF+   + ++ +V W +++  YA +G   +AL++F+ M ++ +KP  +  + +L+A   
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTC 234

Query: 222 AGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
              + +GR    + +K    IEP +     +  + ++ GQV  A K++ D    P+ +LW
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATA-KILFDKMKSPNLILW 291

Query: 281 GTLL 284
             ++
Sbjct: 292 NAMI 295


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 301/436 (69%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+  ++ AAR +FD+ME+  +V +N +I GYA+    NEAL LFR + A  +EP
Sbjct: 170 TLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEP 229

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            +VT ++V+ +C  +GAL+ G+WIH Y++  +     V+V TALI+M++KCGSL DA  +
Sbjct: 230 TDVTMLSVIMSCALLGALDLGKWIHEYVKK-KGFDKYVKVNTALIDMFAKCGSLTDAISI 288

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  +D   W++MIV +A HG G  A+ +F EM R  ++P +ITF+GLL AC+HAGLV
Sbjct: 289 FEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLV 348

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +GR +F +M   Y I P ++HYGCMV+LL RAG ++EAY  V  ++I+   +LW TLL 
Sbjct: 349 EQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLS 408

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  HGN+ + +++ E +   + A+ G YV+LSN+YA +G W+ V  +R LMK++GV K 
Sbjct: 409 ACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKV 468

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSS+E++N VHEF +GD  H  S E+   L+E+   +K  GYVP T +V H D+ E+ 
Sbjct: 469 PGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEG 528

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+AFGL++T PGT+I++ KNLR+C DCH   KLIS   GRKI++RD  
Sbjct: 529 KELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQ 588

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +G CSCGD+W
Sbjct: 589 RFHRFEDGKCSCGDFW 604



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  L    T       +  A  LFD + +KD++ +N+M  GYA+      A  LF  +L 
Sbjct: 64  LTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLC 123

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             + P++ T  ++L AC    AL  G  +H +      +  N+ +   LINMY++C  + 
Sbjct: 124 SGLLPDDYTFSSLLKACASSKALREGMGLHCFAVK-LGLNHNIYICPTLINMYAECNDMN 182

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFD +    +V +N++I GYA      +AL LF E+    ++P+D+T + ++ +CA
Sbjct: 183 AARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCA 242

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G ++ G+     +K +   +  V+    ++++ ++ G + +A  +   M++  D+  W
Sbjct: 243 LLGALDLGKWIHEYVKKK-GFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVR-DTQAW 300

Query: 281 GTLLGACRLHGN 292
             ++ A   HG+
Sbjct: 301 SAMIVAFATHGD 312



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  +AK G +  A  +F+ M  +D   W+ MI  +A HG   +A+ +F  M  E V 
Sbjct: 270 TALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVR 329

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+T + +L AC   G +E GR     +  +  I   ++    ++++  + G L +A  
Sbjct: 330 PDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYN 389

Query: 165 VFDRVNDKDV-VVWNSMIVGYAMHG 188
             D++  K   ++W +++   + HG
Sbjct: 390 FVDKLEIKATPILWRTLLSACSTHG 414


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/512 (44%), Positives = 316/512 (61%), Gaps = 33/512 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYA-------------------------------RGGDVLSA 29
            V + LD  L+V T+L+ +YA                               R   V  A
Sbjct: 132 AVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDA 191

Query: 30  EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
           E++F  MP R+L S   ML  Y K GE+  AR +F  M  KD V W+ MI G+A +G  N
Sbjct: 192 EQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFN 251

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           +A   FR +  E + PNEV+   VLSAC Q GA E GR +H ++E S  +++ + V  AL
Sbjct: 252 DAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI-ISVNNAL 310

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           I+ YSKCG+L  ARLVFD +  +  V W +MI G AMHG+G++A++LFNEM    +KP  
Sbjct: 311 IDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDS 370

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           ITFI +L AC+HAGLV+ G  +F+ M + Y IEP +EHYGCMV+L  RAG++++AY  V 
Sbjct: 371 ITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVC 430

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
            M I P+ ++W TLLGAC +HGN+ L  ++   L   +  NSG +VLLSNIYA  G W  
Sbjct: 431 QMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKD 490

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-G 388
           VA +R  M  + ++K PG S IE++  ++ F+AG+ ++  + E +  L EI   L+ E G
Sbjct: 491 VAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGG 550

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YVP+   VLHDI  ++K++S+  HSEKLAVAFG+     G +I++VKNLR+C DCH V K
Sbjct: 551 YVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMK 610

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LISK    +I++RDR+RFH F +G+CSC DYW
Sbjct: 611 LISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/483 (46%), Positives = 316/483 (65%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEV 57
           ++  L  D +    ++   AR GD  S E +   +      R++   T++L  Y K G +
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A ++F  M EKD+V W+ MI GYA +GL  +AL LF +M +E ++P+  T V VLSAC
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +GAL+ G W  S ++ +  +  N  +GTALI+MYSKCGS+  A  +F  +  KD VVW
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLS-NPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVW 385

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+M+VG +M+G  K    LF+ + +  ++P + TFIGLL  C H G VNEGR+FFN MK 
Sbjct: 386 NAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKR 445

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +++ P +EHYGCMV+LL RAG + EA++L+ +M ++P++V+WG LLG C+LH +  L E
Sbjct: 446 VFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAE 505

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           ++ + LI     NSG YV LSNIY+    W+   ++R+ MKE+ +QK   CS IE+   V
Sbjct: 506 QVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIV 565

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFL GD  H  S++IY  L+E+   LKA G+VP T+ VL DI E++K++ L  HSEKLA
Sbjct: 566 HEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLA 625

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFGLI++ P   I++VKNLRVC DCH   KLISK T R+I++RD NRFH F++G+CSC 
Sbjct: 626 VAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCR 685

Query: 478 DYW 480
           DYW
Sbjct: 686 DYW 688



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 148/249 (59%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T++L+ Y K      A  +FDD+ +K+VV W  +I GY   G   EA+  F+++L   ++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  + V VL+AC ++G   SG WI  YI +S  +  NV V T+L++MY KCG+L+ A L
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANL 271

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  + +KD+V W++MI GYA +G  + AL LF +M    LKP   T +G+LSACA  G 
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 225 VNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G    + M ++E+   P +     ++++ S+ G V +A+++   MK + D V+W  +
Sbjct: 332 LDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAM 388

Query: 284 LGACRLHGN 292
           +    ++G+
Sbjct: 389 MVGLSMNGH 397



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L  +L C    G    ++++F  ++E ++  WN MI G       ++A+ L+  M     
Sbjct: 51  LNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGF 110

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T   VL AC +   +  G  IHS +  +     +V V T+L+++Y KC +  DA 
Sbjct: 111 LPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA-GYDHDVFVKTSLLSLYVKCDNFDDAL 169

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + DK+VV W ++I GY   G  ++A+  F ++  + LKP   + + +L+ACA  G
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
               G      + D   +   V     ++++  + G +E A  L+     E D V W T+
Sbjct: 230 DCTSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERA-NLIFSAMPEKDIVSWSTM 287

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +     +G       +   + S+NL  +  T V + +  A +G  D      +LM     
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347

Query: 343 QKEP--GCSSIELSNK 356
              P  G + I++ +K
Sbjct: 348 LSNPVLGTALIDMYSK 363


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/484 (45%), Positives = 315/484 (65%), Gaps = 5/484 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEV 57
           +K ++  D     ++V   A+ G +    +L + +      S    +  ++  Y+K GEV
Sbjct: 189 MKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEV 248

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A  LF  + +KDV+ WN +I G+    L  EAL+LF+ ML     PN+VT ++VL AC
Sbjct: 249 ETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 308

Query: 118 GQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
             +GA++ GRWIH YI    + +     + T+LI+MY+KCG ++ A+ VFD +  + +  
Sbjct: 309 AHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS 368

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WN+MI G+AMHG    A  LF++M +  + P DITF+GLLSAC+H+G+++ GR  F +M 
Sbjct: 369 WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS 428

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
            +Y I PK+EHYGCM++LL   G  +EA +++  M +EPD V+W +LL AC++H N+ LG
Sbjct: 429 QDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELG 488

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E  A+ LI     N G+YVLLSNIYA  G WD VA++RTL+ +KG++K PGCSSIE+ + 
Sbjct: 489 ESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSV 548

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEF+ GD  HP+++EIY MLEE+   ++  G+VP T  VL ++ E+ K+ +L  HSEKL
Sbjct: 549 VHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKL 608

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I+ RDR R H   +G  SC
Sbjct: 609 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSC 668

Query: 477 GDYW 480
            DYW
Sbjct: 669 HDYW 672



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 185/356 (51%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D+YV+TSL+ +YA+ G +  A K+F     R +VS T ++T YA +G +  AR
Sbjct: 92  LKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNAR 151

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD++  KDVV WN MI GY +     EAL L++ M+   V+P+E T V V+SAC Q G
Sbjct: 152 KLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSG 211

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+IE+      N+++   LI++YSKCG ++ A  +F  +  KDV+ WN++I
Sbjct: 212 SIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLI 270

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            G+      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 271 GGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKG 330

Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+   A+ L  
Sbjct: 331 VTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFS 390

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   I+PD + +  LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 391 KMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDL 446



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 135/261 (51%), Gaps = 34/261 (13%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           ++ A  +F+ ++E +++ WN M  G+A +  +  AL L+  M++  + PN  +   +L +
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------- 168
           C +  AL  G+ IH ++       +++ V T+LI+MY++ G L+DA  VFDR        
Sbjct: 75  CAKSKALIEGQQIHGHVLK-LGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 169 -----------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
                                  ++ KDVV WN+MI GY      K+AL+L+ +M +  +
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           KP + T + ++SACA +G +  GR+  + ++D +     ++    +++L S+ G+VE A 
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 266 KLVMDMKIEPDSVLWGTLLGA 286
            L   +  + D + W TL+G 
Sbjct: 253 GLFQGLA-KKDVISWNTLIGG 272



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 14/207 (6%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + + ++++WN+M  G+A++     AL+L+  M  + L P+  +F  LL +CA +  
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKA 80

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + EG++   + +K  Y ++  V     ++++ ++ G++E+A+K V D       V +  L
Sbjct: 81  LIEGQQIHGHVLKLGYDLDMYVN--TSLISMYAQNGRLEDAHK-VFDRSSHRHVVSYTAL 137

Query: 284 LGACRLHGNIALGEKIAEYL-----ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +      G I    K+ + +     +S N   SG YV   N   A+  +  + +      
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISG-YVETCNFKEALELYKDMMKTNVKPD 196

Query: 339 EKG-VQKEPGCS---SIELSNKVHEFL 361
           E   V     C+   SIEL  ++H ++
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWI 223


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/443 (46%), Positives = 300/443 (67%), Gaps = 2/443 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R  V  T +++ Y +      A  +F DM  KDV+ W VM   YAQ+G   EAL LF+ M
Sbjct: 340 RDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEM 399

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             E   P   T VAVL  C  + AL+ GR IHS+I  +R  ++ + V TALINMY KCG 
Sbjct: 400 QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENR-FRMEMVVETALINMYGKCGK 458

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           + +A  VF+++  +D++VWNSM+  YA HG+  + LQLFN+M    +K   ++F+ +LSA
Sbjct: 459 MAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSA 518

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDS 277
            +H+G V +G ++F  M  +++I P  E YGC+V+LL RAG+++EA  +V+ +    PD 
Sbjct: 519 LSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDG 578

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
           +LW TLLGACR H      +  AE ++ ++ ++SG YV+LSN+YAA G+WDGV R+R LM
Sbjct: 579 ILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLM 638

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           + +GV+KEPG SSIE+ N+VHEFL GD  HP+   IY  L+ +N  ++A GY+P T+++L
Sbjct: 639 RSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMIL 698

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ +++K++ L  HSE+LA+AFGLIST PGT ++++KNLRVC DCH   K ISK  GR+
Sbjct: 699 HDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGRE 758

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD +RFH+F +G CSC DYW
Sbjct: 759 ILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA+ G V  A+ +F+ +E KDV  W  MI  Y Q G  + AL +F +M  E V P 
Sbjct: 45  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 104

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +VT VA+L+AC    +L+ G  IH  I   +  + +V VGTALINMY+KCGS++ A   F
Sbjct: 105 KVTYVAILNACASTESLKDGMEIHGQILQ-QGFEGDVFVGTALINMYNKCGSVRGAWDSF 163

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            R+  +DVV W +MI     H     A  L+  M    + P+ IT   + +A      ++
Sbjct: 164 KRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLS 223

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG +F   +     +E  V      VN+   AG + +A +L  DM ++ D V W  ++  
Sbjct: 224 EG-KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITL 281

Query: 287 CRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
              + N     ++   L    + AN  T+VL+ N+Y ++ +      +  L+KE G  ++
Sbjct: 282 YVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 341

Query: 346 PGCSSIELS 354
              ++  +S
Sbjct: 342 AVVATALMS 350



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 139/249 (55%), Gaps = 5/249 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + + +  +   G +  AR LF+DM ++DVV WN++I  Y Q+    EA+ LF R+  + V
Sbjct: 244 MNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGV 303

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           + N++T V +L+    + +L  G+ IH  ++ +     +  V TAL+++Y +C +   A 
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEA-GYDRDAVVATALMSLYGRCEAPGQAW 362

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F  +  KDV+ W  M V YA +GF K+ALQLF EM     +P+  T + +L  CAH  
Sbjct: 363 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 422

Query: 224 LVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            + +GR+   + +++ + +E  VE    ++N+  + G++ EA  +   M  + D ++W +
Sbjct: 423 ALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRDILVWNS 479

Query: 283 LLGACRLHG 291
           +LGA   HG
Sbjct: 480 MLGAYAQHG 488



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 3/239 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K G V  A   F  +E +DVV W  MI    QH     A  L+RRM  + V 
Sbjct: 144 TALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 203

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN++T   V +A G    L  G++++  + +S  ++ +V+V  + +NM+   G L DAR 
Sbjct: 204 PNKITLYTVFNAYGDPNYLSEGKFVYGLV-SSGVMESDVRVMNSAVNMFGNAGLLGDARR 262

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + D+DVV WN +I  Y  +    +A++LF  + +  +K +DITF+ +L+       
Sbjct: 263 LFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTS 322

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G+     +K E   +        +++L  R     +A+K+ +DM    D + W  +
Sbjct: 323 LAKGKVIHELVK-EAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMG-SKDVITWTVM 379



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 3/193 (1%)

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+    VA+L  C     ++ GR +H ++ + R  + N  V   LI MY++CGS+ +A+
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRD-RGFEQNNLVCGHLIQMYAQCGSVPEAQ 59

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+ +  KDV  W  MI  Y   G    AL +F +M    + P+ +T++ +L+ACA   
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            + +G      +  +   E  V     ++N+ ++ G V  A+     ++   D V W  +
Sbjct: 120 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE-HRDVVSWTAM 177

Query: 284 LGACRLHGNIALG 296
           + AC  H   AL 
Sbjct: 178 IAACVQHDQFALA 190


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/483 (46%), Positives = 316/483 (65%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEV 57
           ++  L  D +    ++   AR GD  S E +   +      R++   T++L  Y K G +
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A ++F  M EKD+V W+ MI GYA +GL  +AL LF +M +E ++P+  T V VLSAC
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +GAL+ G W  S ++ +  +  N  +GTALI+MYSKCGS+  A  +F  +  KD VVW
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLS-NPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVW 385

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+M+VG +M+G  K    LF+ + +  ++P + TFIGLL  C H G VNEGR+FFN MK 
Sbjct: 386 NAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKR 445

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +++ P +EHYGCMV+LL RAG + EA++L+ +M ++P++V+WG LLG C+LH +  L E
Sbjct: 446 VFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAE 505

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           ++ + LI     NSG YV LSNIY+    W+   ++R+ MKE+ +QK   CS IE+   V
Sbjct: 506 QVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIV 565

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFL GD  H  S++IY  L+E+   LKA G+VP T+ VL DI E++K++ L  HSEKLA
Sbjct: 566 HEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLA 625

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFGLI++ P   I++VKNLRVC DCH   KLISK T R+I++RD NRFH F++G+CSC 
Sbjct: 626 VAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCR 685

Query: 478 DYW 480
           DYW
Sbjct: 686 DYW 688



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/249 (35%), Positives = 147/249 (59%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T++L+ Y K      A  +FDD+ +K+VV W  +I GY   G   EA+  F+++L   ++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  + V VL+AC ++G   SG WI  YI +S  +  NV V T+L++MY KCG+L+ A L
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANL 271

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  + +KD+V W++MI GYA +G  + AL LF +M    LKP   T +G+LSACA  G 
Sbjct: 272 IFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA 331

Query: 225 VNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G    + M ++E+   P +     ++++ S+ G V +A+++   MK   D V+W  +
Sbjct: 332 LDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAM 388

Query: 284 LGACRLHGN 292
           +    ++G+
Sbjct: 389 MVGLSMNGH 397



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L  +L C    G    ++++F  ++E ++  WN MI G       ++A+ L+  M     
Sbjct: 51  LNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGF 110

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T   VL AC +   +  G  IHS +  +     +V V T+L+++Y KC +  DA 
Sbjct: 111 LPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA-GYDHDVFVKTSLLSLYVKCDNFDDAL 169

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + DK+VV W ++I GY   G  ++A+  F ++  + LKP   + + +L+ACA  G
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
               G      + D   +   V     ++++  + G +E A  L+     E D V W T+
Sbjct: 230 DCTSGEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERA-NLIFSAMPEKDIVSWSTM 287

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +     +G       +   + S+NL  +  T V + +  A +G  D      +LM     
Sbjct: 288 IQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEF 347

Query: 343 QKEP--GCSSIELSNK 356
              P  G + I++ +K
Sbjct: 348 LSNPVLGTALIDMYSK 363


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/452 (46%), Positives = 305/452 (67%), Gaps = 1/452 (0%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A+KLF  +  R+LV LT M++ Y++ G V  AR++FD MEEKD+VCW+ MI GYA+    
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EAL LF  M    ++P++VT ++V+SAC ++G L+  +WIH Y++ +  +   + V  A
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKN-GLGGALPVNNA 120

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI+MY+KCG+L  AR VF+++  ++V+ W SMI  +A+HG   +AL+ F +M    +KP+
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            +TF+G+L AC+HAGLV EGRR F +M +E+ I PK EHYGCMV+L  RA  + +A +LV
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
             M + P+ V+WG+L+ AC++HG   LGE  A+ ++     + G  V LSNIYA    W 
Sbjct: 241 ETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQ 300

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            V  +R LMK++G+ KE GCS IEL+N+V+EF+  D +H ++ +IY  L+E+   LK  G
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           Y P T+ VL D+ E+ K+  +  HSEKLA+ +GL+    G+ I+IVKNLRVC DCH   K
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIK 420

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+SK  G +I++RDR RFHH+  G CSC DYW
Sbjct: 421 LVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L   L V+ +L+D+YA+ G++ +A  +F  M  R+++S T+M+  +A          
Sbjct: 108 KNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFA---------- 157

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                 HG A+ AL  F +M  E ++PN VT V VL AC   G 
Sbjct: 158 ---------------------IHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGL 196

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           +E GR   + + N  NI    +    +++++ +   L+DA  LV       +VV+W S++
Sbjct: 197 VEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLM 256

Query: 182 VGYAMHG 188
               +HG
Sbjct: 257 AACQIHG 263


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/470 (47%), Positives = 314/470 (66%), Gaps = 15/470 (3%)

Query: 19   LYARGGDVLSAEKL---FATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDM--EEKD 71
            L  R G+ L AE     F T+   Q SLV L      Y   G   +A  +FD+M    ++
Sbjct: 818  LALREGECLHAEAAKNGFVTLVFVQNSLVHL------YGACGLFESAHKVFDEMPVRGRN 871

Query: 72   VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
            +V WN M++ +A +G  NE L +F  ML     P+  T V+VL+AC + GAL  GR +H 
Sbjct: 872  LVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHV 931

Query: 132  YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFG 190
            Y+E    ++ N  V  ALI++Y+KCGS+ DAR +F+ +   + VV W S+IVG A +GFG
Sbjct: 932  YVEKVGLVE-NSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFG 990

Query: 191  KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            K+AL+LF+ M R +L P++IT +G+L AC+H GLV++G R+F+ MK++Y I P++EH GC
Sbjct: 991  KEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC 1050

Query: 251  MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
            MV+LL RAG+VEEAY  ++ M +EP++V+W TLLG+C +H  + LG+   E L+  +  +
Sbjct: 1051 MVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGH 1110

Query: 311  SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
            SG YVLLSN+YAA+G W  V  +R  M +  V+K PG S +EL N V+EF+ GD  HP+S
Sbjct: 1111 SGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPES 1170

Query: 371  KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
            ++IY ML EI   L+ EGY+P+T  VL DI E++K+ +L  HSE+LA+AF L+ + PG  
Sbjct: 1171 EQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIP 1230

Query: 431  IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            I+I+KNLR+C DCH  F LISK   R+I++RDR+RFHHF  G CSC DYW
Sbjct: 1231 IRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-VQVGTAL 149
           AL L RR LA    P+  T   ++ AC ++ AL  G  +H+  E ++N  V  V V  +L
Sbjct: 791 ALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHA--EAAKNGFVTLVFVQNSL 845

Query: 150 INMYSKCGSLKDARLVFDR--VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           +++Y  CG  + A  VFD   V  +++V WNSM+  +A +G   + L +F EM  +   P
Sbjct: 846 VHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAP 905

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
              T + +L+ACA  G +  GRR  +   ++  +         +++L ++ G V +A ++
Sbjct: 906 DGFTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRI 964

Query: 268 VMDMKIEPDSVLWGTLL 284
             +M +    V W +L+
Sbjct: 965 FEEMGLGRTVVSWTSLI 981



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 3    KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAAAR 61
            K  L ++ +VS +L+DLYA+ G V  A ++F  M   R++VS T+++             
Sbjct: 935  KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIV------------ 982

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                               G A +G   EAL LF  M  EK+ P E+T V VL AC   G
Sbjct: 983  -------------------GLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCG 1023

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
             ++ G      ++    I   ++    ++++  + G +++A   +     + + VVW ++
Sbjct: 1024 LVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTL 1083

Query: 181  IVGYAMH 187
            +   AMH
Sbjct: 1084 LGSCAMH 1090


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/436 (47%), Positives = 300/436 (68%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y    E+  AR +FD + E  VV +N MI GYA+    NEAL LFR + A  ++P
Sbjct: 161 TLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKP 220

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            +VT ++VLS+C  +GAL+ G+W+H Y++ +      V+V TALI+MY+KCGSL DA  V
Sbjct: 221 TDVTMLSVLSSCALLGALDLGKWMHEYVKKN-GFNRFVKVDTALIDMYAKCGSLDDAVCV 279

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  +D   W++MI+ YA+HG G  A+ LF EM +   +P +ITF+GLL AC+H GLV
Sbjct: 280 FENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLV 339

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG  +F  M+D+Y + P ++HYGCMV+LL RAG++EEAY+ ++ + I P  +LW TLL 
Sbjct: 340 EEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLS 399

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  HGN+ LG+++ E +   + ++ G Y++LSN+ A  G W+ V  VR LM E+GV K 
Sbjct: 400 ACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKI 459

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSS+E++N VHEF +GD  H  S +++  L+E+   LK  GYVP T +V H D+ +++
Sbjct: 460 PGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEE 519

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSEKLA+ FGL++T PGT+I++VKNLRVC DCH+  KLIS    R+I++RD  
Sbjct: 520 KEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQ 579

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSC DYW
Sbjct: 580 RFHHFKDGKCSCEDYW 595



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 3/233 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  LFD + + D+V +N M  GYA+      A  LF ++L   + P++ T  ++L AC  
Sbjct: 74  AHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACAS 133

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             ALE GR +H  +     +  NV V   LINMY+ C  +  AR VFD++ +  VV +N+
Sbjct: 134 CKALEEGRQLHC-LAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNA 192

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI GYA      +AL LF E+    LKP+D+T + +LS+CA  G ++ G+     +K   
Sbjct: 193 MITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKN- 251

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
                V+    ++++ ++ G +++A  +  +M +  D+  W  ++ A  +HG+
Sbjct: 252 GFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVR-DTQAWSAMIMAYAIHGH 303



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 42/222 (18%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +  A  +F++M  +D   W+ MI  YA HG   +A+ LF+ M     E
Sbjct: 261 TALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTE 320

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+T + +L AC   G +E G      + +   +   ++    ++++  + G L++A  
Sbjct: 321 PDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAY- 379

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
                           IVG                   + ++P+ I +  LLSAC   G 
Sbjct: 380 --------------EFIVG-------------------LPIRPTPILWRTLLSACGSHGN 406

Query: 225 VNEGRRFFNTMKDEYAIEPKVEH---YGCMVNLLSRAGQVEE 263
           V  G+R       E   E    H   Y  + NL +RAG+ E+
Sbjct: 407 VELGKRVI-----EQIFELDDSHGGDYIILSNLCARAGRWED 443



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 39/244 (15%)

Query: 138 NIKVNVQVGTALINMYS---KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
           ++  ++ V T  IN  S      S++ A  +FD++   D+V++N+M  GYA       A 
Sbjct: 47  HLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAF 106

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF---------------NTMKDEY 239
            LF ++    L P D TF  LL ACA    + EGR+                  T+ + Y
Sbjct: 107 TLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMY 166

Query: 240 AI---------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWG 281
                            EP V  Y  M+   +R  +  EA  L  +++   ++P  V   
Sbjct: 167 TACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTML 226

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKE 339
           ++L +C L G + LG+ + EY + +N  N    V   L ++YA  G+ D    V   M  
Sbjct: 227 SVLSSCALLGALDLGKWMHEY-VKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAV 285

Query: 340 KGVQ 343
           +  Q
Sbjct: 286 RDTQ 289


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/438 (48%), Positives = 300/438 (68%), Gaps = 1/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GEV  A  LF  +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 234 VNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 293

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
            PN+VT ++VL AC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG ++ A
Sbjct: 294 TPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 353

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  K +  WN+MI G+AMHG    +  LF+ M +I ++P DITF+GLLSAC+H+
Sbjct: 354 HQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHS 413

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F +M  +Y + PK+EHYGCM++LL  +G  +EA +++  M++EPD V+W +
Sbjct: 414 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 473

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++HGN+ L E  A+ LI     N  +Y+LLSNIYA+ G W+ VAR+R L+  K +
Sbjct: 474 LLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCM 533

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + V EF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 534 KKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 593

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KL+SK   R+I+ RD
Sbjct: 594 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARD 653

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF +G CSC DYW
Sbjct: 654 RTRFHHFRDGVCSCNDYW 671



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 186/356 (52%), Gaps = 41/356 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +Y +   +  A K+F     R +VS T ++T YA +G++ +A+
Sbjct: 91  LKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQ 150

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD++  KDVV WN MI GYA+ G   EAL LF  M+   V P+E T V VLSAC   G
Sbjct: 151 KLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSG 210

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS++++      N+++  ALI++YSKCG ++ A  +F  ++ KDV+ WN++I
Sbjct: 211 SIELGRQVHSWVDD-HGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLI 269

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 270 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKG 329

Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+ + ++ L  
Sbjct: 330 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFS 389

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
            M+   IEPD + +  LL AC   G + LG  I      +Y ++  L + G  + L
Sbjct: 390 RMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDL 445



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 32/257 (12%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  +F+ ++E + + WN MI G+A       +L L+  M++  + PN  T   +L +C +
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 120 IGALESGRWIHS--------------------YIEN----------SRNIKVNVQVGTAL 149
                 G+ IH                     Y++N           R+   +V   TAL
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           I  Y+  G ++ A+ +FD +  KDVV WN+MI GYA  G  K+AL+LF EM ++ ++P +
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
            T++ +LSACAH+G +  GR+  ++  D++  +  ++    +++L S+ G+VE A  L  
Sbjct: 197 STYVTVLSACAHSGSIELGRQ-VHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 270 DMKIEPDSVLWGTLLGA 286
            +  + D + W TL+G 
Sbjct: 256 GLSYK-DVISWNTLIGG 271



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 18/215 (8%)

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L  A  VF+ + + + ++WN+MI G+A+      +L L+  M  + L P+  TF  LL +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 219 CAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           CA +    EG++     +K  + ++  V  +  ++++  +  ++E+AYK V D     D 
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYV--HTSLISMYVQNWRLEDAYK-VFDRSSHRDV 130

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
           V +  L+      G+I   +K+ + +  +++ +    +   + YA  G +     +   M
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMI---SGYAETGCYKEALELFEEM 187

Query: 338 KEKGVQKE--------PGCS---SIELSNKVHEFL 361
            +  V+ +          C+   SIEL  +VH ++
Sbjct: 188 MKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWV 222


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/444 (47%), Positives = 301/444 (67%), Gaps = 4/444 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R +V  T +++ Y +      A  +F DM  KDV+ W VM   YAQ+G   EAL LF+ M
Sbjct: 341 RDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEM 400

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCG 157
             E   P   T VAVL  C  + AL+ GR IHS+I EN    ++ + V TALINMY KCG
Sbjct: 401 QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENG--FRMEMVVETALINMYGKCG 458

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            + +AR VF+++  +D++VWNSM+  YA HG+  + LQLFN+M     K   ++F+ +LS
Sbjct: 459 KMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLS 518

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPD 276
           A +H+G V +G ++F  M  +++I P  E YGC+V+LL RAG+++EA  +V+ +    PD
Sbjct: 519 ALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPD 578

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
            +LW TLLGACR H      +  AE ++ ++ ++SG YV+LSN+YAA G+WDGV R+R L
Sbjct: 579 GILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKL 638

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           M+ +GV+KEPG SSIE+ N+VHEFL GD  HP+   IY  L+ +N  ++A GY+P T+++
Sbjct: 639 MRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMI 698

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           LHD+ +++K++ L  HSE+LA+AFGL+ST PGT ++++KNLRVC DCH   K ISK  GR
Sbjct: 699 LHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGR 758

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++RD +RFH+F +G CSC DYW
Sbjct: 759 EILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 141/249 (56%), Gaps = 5/249 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + + +  +   G +  AR LF+DM ++DVV WN++I  Y Q+    EA+ LF R+  + +
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           + N++T V +L+    + +L  G+ IH  ++ +     +V V TAL+++Y +C +   A 
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEA-GYDRDVVVATALMSLYGRCEAPGQAW 363

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F  +  KDV+ W  M V YA +GF K+ALQLF EM     +P+  T + +L  CAH  
Sbjct: 364 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 423

Query: 224 LVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            + +GR+   + +++ + +E  VE    ++N+  + G++ EA + V +   + D ++W +
Sbjct: 424 ALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEA-RSVFEKMAKRDILVWNS 480

Query: 283 LLGACRLHG 291
           +LGA   HG
Sbjct: 481 MLGAYAQHG 489



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 4/300 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA+ G V  A+ +F+ +E KDV  W  MI  Y Q G  + AL +F +M  E V P 
Sbjct: 46  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 105

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +VT VA+L+AC    +L+ G  IH  I   +  + +V VGTALINMY+KCGS++ A   F
Sbjct: 106 KVTYVAILNACASTESLKDGMEIHGQILQ-QGFEGDVFVGTALINMYNKCGSVRGAWDSF 164

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            R+  +DVV W +MI     H     A  L+  M    + P+ IT   + +A      ++
Sbjct: 165 KRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLS 224

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG +F  ++     +E  V      +N+   AG + +A +L  DM ++ D V W  ++  
Sbjct: 225 EG-KFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVITF 282

Query: 287 CRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
              + N     ++   L    + AN  T+VL+ N+Y ++ +      +  L+KE G  ++
Sbjct: 283 YVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 342



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 3/239 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K G V  A   F  +E +DVV W  MI    QH     A  L+RRM  + V 
Sbjct: 145 TALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVV 204

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN++T   V +A G    L  G++I+S + +SR ++ +V+V  + +NM+   G L DAR 
Sbjct: 205 PNKITLYTVFNAYGDPHYLSEGKFIYSLV-SSRVMESDVRVMNSAMNMFGNAGLLGDARR 263

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + D+DVV WN +I  Y  +    +A++LF  + +  +K +DITF+ +L+       
Sbjct: 264 LFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTS 323

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G+     +K E   +  V     +++L  R     +A+K+ +DM    D + W  +
Sbjct: 324 LAKGKVIHELVK-EAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMG-SKDVITWTVM 380



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 3/193 (1%)

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+    VA+L  C     ++ GR +H ++ + R  + N  V   LI MY++CGS+ +A+
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCD-RGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+ +  KDV  W  MI  Y   G    AL +F +M    + P+ +T++ +L+ACA   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            + +G      +  +   E  V     ++N+ ++ G V  A+     ++   D V W  +
Sbjct: 121 SLKDGMEIHGQILQQ-GFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE-HRDVVSWTAM 178

Query: 284 LGACRLHGNIALG 296
           + AC  H   AL 
Sbjct: 179 IAACVQHDQFALA 191


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/516 (43%), Positives = 316/516 (61%), Gaps = 39/516 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  LD +LY+   LV +Y +   + +A ++   MP R +VS  +M+  YA+ G    A 
Sbjct: 164 VKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDAL 223

Query: 62  VLFDDME-------------------------------------EKDVVCWNVMIDGYAQ 84
            L  +ME                                     EK ++ WNVMI  Y  
Sbjct: 224 KLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVN 283

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + + NEA+ L+ +M    VEP+ V+  +VL ACG + A   GR IH Y+E  + ++ N+ 
Sbjct: 284 NAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKK-LRPNLL 342

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  ALI+MY+KCG LK+AR VFD++  +DVV W SMI  Y M G GKDA+ LF +M    
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSG 402

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             P  I F+ +L+AC+HAGLV+EGR  FN M  EY I P +EHY CMV+LL RAG+++EA
Sbjct: 403 FTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEA 461

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y L   M +EP+  +WG+LL ACR++ ++ +    A++L       SG YVLLSNIYA  
Sbjct: 462 YHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKA 521

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W  V  VR++M  KG++K PG S++E+++ V+ FLAGD  H +SKEIY  L  + G +
Sbjct: 522 GRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRM 581

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
           K  GY+P+T   LHD+ E+ K+  L VHSEKLA+ F +++T+PG++I+I KN+RVC DCH
Sbjct: 582 KELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCH 641

Query: 445 AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              KLISK   R+I++RD +RFHHF +G CSCGDYW
Sbjct: 642 VATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  GE    R +FD++ +K+VV +NVMI  Y  +GL  +AL++F+ M  +   P+
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC   G L  G  IH  +     + +N+ +G  L++MY KC  L  AR V 
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVK-LGLDMNLYIGNGLVSMYGKCKWLDAARRVL 195

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  +D+V WNSM+ GYA +G   DAL+L  EM  ++LKP   T   LL A  +    N
Sbjct: 196 DEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDN 255

Query: 227 --EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWG 281
               +  F  +K++  I      +  M+ +        EA  L + M+   +EPD+V   
Sbjct: 256 VLYVKDMFVKLKEKSLIS-----WNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSIS 310

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNL 308
           ++L AC       LG +I EY+  + L
Sbjct: 311 SVLPACGDLSAAVLGRRIHEYVERKKL 337



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 43/196 (21%)

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +HS I   +N+  N  +G  L+  Y+ CG     R +FD + DK+VV +N MI  Y  +G
Sbjct: 57  LHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNG 116

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------HAGLVNEG--------- 228
             +DAL +F  M      P + T+  +L AC+           H  +V  G         
Sbjct: 117 LYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGN 176

Query: 229 ---------------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL---VMD 270
                          RR  + M     +      +  MV   ++ G+  +A KL   + D
Sbjct: 177 GLVSMYGKCKWLDAARRVLDEMPGRDMVS-----WNSMVAGYAQNGRFNDALKLCREMED 231

Query: 271 MKIEPDSVLWGTLLGA 286
           +K++PD+   G+LL A
Sbjct: 232 LKLKPDAGTMGSLLPA 247


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/472 (45%), Positives = 301/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V+ +L+ +YA+ G V +A  +   A M   +++S T +L  Y K G++  AR +FD M  
Sbjct: 332 VTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSN 391

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+G  +EA+ LFR M+    EPN  T  AVLS C  +  LE G+ I
Sbjct: 392 RDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQI 451

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S   + +  V  +++ MY++ GSL  AR VFDRV+  K+ V W SMIV  A HG
Sbjct: 452 HCKAIRSLQ-EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G+DA+ LF EM R+ +KP  ITF+G+LSAC H G V+EG+R+F  ++D++ I P++ HY
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHY 570

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+RAG   EA + +  M +EPD++ WG+LL ACR+H N  L E  AE L+S + 
Sbjct: 571 ACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDP 630

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  LSN+Y+A G W+  A++    K+K V+KE G S   + N+VH F A D+ HP
Sbjct: 631 GNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHP 690

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   +Y    ++   +K  G+VP  Q VLHD+ ++ K+  L  HSEKLA+AFGL+ST   
Sbjct: 691 QRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEK 750

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH   K ISK   R+I++RD  RFHHF +G CSC DYW
Sbjct: 751 TTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 167/330 (50%), Gaps = 39/330 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   + V+ S++++Y + GD  +A  +F  MP+RS+ S   M++  A  G +  A 
Sbjct: 189 VKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLAL 248

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
            LF++M ++ +V WN +I GY Q+GL  +AL  F RML+   + P+E T  +VLSAC  +
Sbjct: 249 SLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANL 308

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS---------------------- 158
           G +  G+ +H+YI  SR   +  QV  ALI+MY+K GS                      
Sbjct: 309 GMVSIGKQVHAYILRSRMPYIG-QVTNALISMYAKSGSVENARGVMQQAVMADLNVISFT 367

Query: 159 -----------LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
                      +K AR +FD ++++DVV W +MIVGY  +G   +A++LF  M R   +P
Sbjct: 368 ALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEP 427

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           +  T   +LS CA    +  G++  +        E        +V + +R+G +  A ++
Sbjct: 428 NSYTVAAVLSVCASLACLEYGKQ-IHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRV 486

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
              +    ++V W +++ A   HG   LGE
Sbjct: 487 FDRVHWRKETVTWTSMIVALAQHG---LGE 513



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 149/307 (48%), Gaps = 48/307 (15%)

Query: 29  AEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           A +LF  +P  QR++ +  ++L+ YAK G +A AR +F +M E+D V W VM+ G  + G
Sbjct: 82  ARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVG 141

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
              EA+ +F  M+ + + P + T   VLS+C    A   GR +HS++     +   V V 
Sbjct: 142 RFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVK-LGLSSCVPVA 200

Query: 147 TALINMYSKCGSLKDARLVFDR-------------------------------VNDKDVV 175
            +++NMY KCG  + AR VF+R                               + D+ +V
Sbjct: 201 NSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIV 260

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
            WN++I GY  +G    AL  F+ M     + P + T   +LSACA+ G+V+ G++    
Sbjct: 261 SWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVH-- 318

Query: 235 MKDEYAIEPKVEHYGCMVNLL----SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
               Y +  ++ + G + N L    +++G VE A  ++    +   +V+  T L    L 
Sbjct: 319 ---AYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTAL----LE 371

Query: 291 GNIALGE 297
           G + LG+
Sbjct: 372 GYVKLGD 378


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/479 (43%), Positives = 309/479 (64%), Gaps = 2/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK     + +   +L+ +Y +  ++  A ++F+ M  + +VS  + L    +   +  AR
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEAR 505

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             FD+M  +D V W  +I  YA    +NEA+  F+ M  E   PN      +L  CG +G
Sbjct: 506 NTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A + G+ IH+ +     +   + V  ALI+MY KCG   D+R +FD + ++D+  WN++I
Sbjct: 566 ASKIGQQIHT-VAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTII 623

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG G++A++++  M    + P+++TF+GLL+AC+HAGLV+EG +FF +M  +Y +
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGL 683

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P  EHY CMV+LL R G V+ A + + DM IEPD+V+W  LLGAC++H N  +G++ AE
Sbjct: 684 TPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAE 743

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L     +N+G YV+LSNIY+++G W  VA VR +MK++GV KEPGCS  ++ +K+H F+
Sbjct: 744 KLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFV 803

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD +H + +EI   LEE+   LKA GYVP T+ VLHDI E+QK++SL  HSEKLAVA+ 
Sbjct: 804 TGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYC 863

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T  G  I+I+KNLR+C DCH   K +S  T R+I +RD NRFHHF NG+CSC D+W
Sbjct: 864 LLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 13/238 (5%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           K +   T+L+   A+ G +  A  LF  +P+  +VS   ++T Y + G V  A+ LFD M
Sbjct: 320 KSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKM 379

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             ++ + W  MI GYAQ+G + EAL L + +    + P+  +  ++  AC  I ALE+G 
Sbjct: 380 PFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGT 439

Query: 128 WIHSYIENSRNIKVNVQVGT----ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
            +HS       +KV  Q  +    ALI MY KC +++ AR VF R+  KD+V WNS +  
Sbjct: 440 QVHSLA-----VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAA 494

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              +    +A   F+ M    L   D+++  ++SA AHA   NE    F TM  E+ +
Sbjct: 495 LVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 27/349 (7%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+++     +++  Y + GD+  A +LF  MP R + S  +MLT Y    ++  AR LF+
Sbjct: 123 LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFE 182

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC---GQIGA 122
            M E+++V W VMI GY +     +A  +F +M  E + P++    + LSA    G +  
Sbjct: 183 KMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV 242

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL-VFDRVNDKDVVVWNSMI 181
           LES R     +      + +V +GTA++N+YS+  S+ D  +  F+ + +++   W++MI
Sbjct: 243 LESLR----VLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMI 298

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              + HG   DA     E   ++   S      L++  A  G +++ R  F     E   
Sbjct: 299 AALS-HGGRIDAAIAVYERDPVK---SIACRTALITGLAQCGRIDDARILF-----EQIP 349

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI--ALGEKI 299
           EP V  +  ++    + G V EA +L   M    +++ W  ++     +G    ALG   
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSEEALG--- 405

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGC 348
               + Q L  SG    LS++ +       +  + T  +   +  + GC
Sbjct: 406 ----LLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC 450



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 13  STSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV 72
           S  + DL  R G V  A ++F  MP+R +++  +M++ Y   G   AAR L+D +   ++
Sbjct: 38  SARIRDL-GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
               +++ GY + G   EA  +F  ML    E N V   A++S   Q G +   R +   
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGK 191
           + +      +V    +++  Y     + DAR +F+++ ++++V W  MI GY  +   GK
Sbjct: 153 MPSR-----DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK 207

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--EGRRFFNTMKDEYAIEPKVEHYG 249
            A  +F +M R  L P    F   LSA    G ++  E  R    +  +   E  V    
Sbjct: 208 -AWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLR---VLALKTGFERDVVIGT 263

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            ++N+ SR   V +      +  IE +   W T++ A    G I
Sbjct: 264 AILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRI 307



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 62/256 (24%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
            + G V  AR +FD M  +D++ WN MI  Y  +G+ + A  L+                
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY---------------- 88

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
                     A+  G               N++ G  L++ Y + G + +AR VFD + +
Sbjct: 89  ---------DAISGG---------------NMRTGAILLSGYGRLGRVLEARRVFDGMLE 124

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DI-TFIGLLSACAHAGLVNEGR 229
           ++ V WN+MI  Y  +G    A +LF+ M      PS D+ ++  +L+   H+  + + R
Sbjct: 125 RNTVAWNAMISCYVQNGDITMARRLFDAM------PSRDVSSWNSMLTGYCHSLQMVDAR 178

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE---EAYKLVMDMKIE---PDSVLWGTL 283
             F  M +   +   V        ++S  G++E   +A+ +   M  E   PD   + + 
Sbjct: 179 NLFEKMPERNLVSWTV--------MISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASA 230

Query: 284 LGACRLHGNIALGEKI 299
           L A +  GN+ + E +
Sbjct: 231 LSAVKGLGNLDVLESL 246


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/480 (46%), Positives = 313/480 (65%), Gaps = 8/480 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVL 63
            D +    L+    R   +   E L A   +  LV+L     +++  Y   G   +A  +
Sbjct: 118 PDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRV 177

Query: 64  FDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           FD++   E+++V WN +++G+A +G  NE L +FR  L   + P+  T V+VL+AC +IG
Sbjct: 178 FDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIG 237

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
           AL  GR +H +  +   +  N  VG ALI++Y+KCG ++DA  VF+ +   + VV W S+
Sbjct: 238 ALTLGRRVHVF-ASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSL 296

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           IVG A +GFGKDAL+LF  M R RL P+DIT +G+L AC+H GLV++G R+FN M+D+Y 
Sbjct: 297 IVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYG 356

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P +EH GCMV+LL RAG+VEEA+  +  M +EP++V+W TLLGAC +H  + LGE   
Sbjct: 357 IAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAW 416

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             L+  +  +SG YVLLSN+YAA+G W     +R  M   GV+K PG S +EL N V+EF
Sbjct: 417 ARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEF 476

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP+S +IY  L EI   L+ +GYVP+T  VL DI E++K+ +L  HSE+LA+AF
Sbjct: 477 VMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAF 536

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ + PG+ I+IVKNLR+C DCH V KLISK   R+I++RDR+RFHHF  G CSC DYW
Sbjct: 537 ALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           A  VL   + + D    N ++   A       AL L RR LA    P+  T   +L AC 
Sbjct: 75  AVTVLSCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACT 131

Query: 119 QIGALESGRWIHSYIENSRNIKVN-VQVGTALINMYSKCGSLKDARLVFDRVN--DKDVV 175
           ++ AL  G  +H+  E ++N  V  V V  +L++ Y  CG  + A  VFD +   ++++V
Sbjct: 132 RLLALREGESLHA--EAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLV 189

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            WNS++ G+A +G   + L +F E     L P   T + +L+ACA  G +  GRR  +  
Sbjct: 190 SWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRR-VHVF 248

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             +  +         +++L ++ G VE+A+K+  +M +    V W +L+
Sbjct: 249 ASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLI 297



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 31/186 (16%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  + +V  +L+DLYA+ G V  A K+F                      E+  AR 
Sbjct: 251 KVGLVGNSHVGNALIDLYAKCGGVEDAWKVFE---------------------EMGVART 289

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                    VV W  +I G A +G   +AL LF  M  E++ P ++T V VL AC   G 
Sbjct: 290 ---------VVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGL 340

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMI 181
           ++ G    + +++   I   ++    ++++  + G +++A   +     + + VVW +++
Sbjct: 341 VDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLL 400

Query: 182 VGYAMH 187
              AMH
Sbjct: 401 GACAMH 406


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/474 (46%), Positives = 305/474 (64%), Gaps = 14/474 (2%)

Query: 20  YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           + + G  L A  L    P        ++L  YAK G++  +R LFD + E D+  WN M+
Sbjct: 119 WLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTML 178

Query: 80  DGYAQHG-------------LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
             YAQ               ++ EAL LF  M   +++PNEVT VA++SAC  +GAL  G
Sbjct: 179 AAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQG 238

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
            W H Y+  + N+K+N  VGTAL++MYSKCG L  A  +FD ++D+D   +N+MI G+A+
Sbjct: 239 AWAHGYVLRN-NLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAV 297

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G  AL+L+  M    L P   T +  + AC+H GLV EG   F +MK  + +EPK+E
Sbjct: 298 HGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLE 357

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYGC+++LL RAG+++EA + + DM ++P+++LW +LLGA +LHGN+ +GE   ++LI  
Sbjct: 358 HYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIEL 417

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
               SG YVLLSN+YA+IG W+ V RVR LMK+ GV K PG S +E++  +HEFL GD  
Sbjct: 418 EPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKA 477

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP SKEIY  + EIN  L   G+ P+T  VL D+ E+ K++ L  HSE+LA+AF LI++ 
Sbjct: 478 HPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASS 537

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I+I+KNLRVC DCHA+ KLIS    R I++RDRNRFHHF +G+CSC DYW
Sbjct: 538 SSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 121/249 (48%), Gaps = 19/249 (7%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHG-LANEALVLFRRMLAEK-VEPNEVTAVAVLSAC 117
           A  +F+ +    +  +N +I     H    + A  L+  +L  K ++PN  T  ++  AC
Sbjct: 55  AFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKAC 114

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
                L+ G  +H+++        +  V  +L+N Y+K G L  +R +FD++++ D+  W
Sbjct: 115 ASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATW 174

Query: 178 NSMIVGYAMHG-------------FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           N+M+  YA                   +AL LF +M   ++KP+++T + L+SAC++ G 
Sbjct: 175 NTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGA 234

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +++G       +++   +   V     +V++ S+ G +  A +L  ++  + D+  +  +
Sbjct: 235 LSQGAWAHGYVLRNNLKLNRFVG--TALVDMYSKCGCLNLACQLFDELS-DRDTFCYNAM 291

Query: 284 LGACRLHGN 292
           +G   +HG+
Sbjct: 292 IGGFAVHGH 300


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/436 (48%), Positives = 299/436 (68%), Gaps = 4/436 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +++ YAK G V  AR +FD M EK VV WN MI GY Q+G   EA+ LF  M    V+P+
Sbjct: 159 LVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPD 218

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLV 165
             T V++LSAC Q+GA+  G W+H YI  +RN   +NV +GTAL+NMYS+CG++  AR V
Sbjct: 219 SSTFVSLLSACAQVGAIGLGFWVHEYI--ARNCFDLNVVLGTALMNMYSRCGNVSKAREV 276

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD + +K++V W +MI GY MHG G  A++LFNEM     +P+++TF+ +LSACAHAGLV
Sbjct: 277 FDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLV 336

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTLL 284
           +EGR+ F TMK EY + P VEH  CMV++L RAG + EAY+ + +    EP   +W  +L
Sbjct: 337 DEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAML 396

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC++H N  LG ++AE+L+S    N G YV+LSNIYA  G  D V ++R +M    ++K
Sbjct: 397 GACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKK 456

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E G S+I++ +KV+ F  GD  HPK+ +IY+ L+E+    +  GY+P ++ V+H++ E++
Sbjct: 457 EVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEE 516

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L  HSEKLA+AFGL+ T  G +I+IVKNLR+C DCH   K IS    R+I +RDR 
Sbjct: 517 REYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRL 576

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+CSC DYW
Sbjct: 577 RFHHFKDGSCSCQDYW 592



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 151/304 (49%), Gaps = 7/304 (2%)

Query: 39  RSLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           RSL+  T +L+  YA    ++  R LF  + + D   ++ +I   ++     E+L+ +RR
Sbjct: 51  RSLI--TKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRR 108

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML   +  +  T  AV+ +   + A   G  IH ++       ++  V  AL++ Y+K G
Sbjct: 109 MLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYIC-GYGLDAYVQAALVSFYAKSG 167

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  AR VFD++ +K VV WNSMI GY  +GFGK+A++LF  M  + +KP   TF+ LLS
Sbjct: 168 HVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLS 227

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           ACA  G +  G      +      +  V     ++N+ SR G V +A + V D   E + 
Sbjct: 228 ACAQVGAIGLGFWVHEYIARN-CFDLNVVLGTALMNMYSRCGNVSKA-REVFDSMEEKNI 285

Query: 278 VLWGTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           V W  ++    +HG+ +   E   E        N+ T+V + +  A  G  D   ++ T 
Sbjct: 286 VAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTT 345

Query: 337 MKEK 340
           MK++
Sbjct: 346 MKQE 349



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 2/145 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y++ G V+ AR +FD MEEK++V W  MI GY  HG  ++A+ LF  M  +   
Sbjct: 258 TALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPR 317

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT VAVLSAC   G ++ GR I + ++    +  +V+    +++M  + G L +A  
Sbjct: 318 PNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQ 377

Query: 165 VFDRVNDKD--VVVWNSMIVGYAMH 187
                + K+    VW +M+    MH
Sbjct: 378 FIKNTSPKEPAPAVWTAMLGACKMH 402


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/479 (43%), Positives = 309/479 (64%), Gaps = 2/479 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK     + +   +L+ +Y +  ++  A ++F+ M  + +VS  + L    +   +  AR
Sbjct: 446 VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEAR 505

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             FD+M  +D V W  +I  YA    +NEA+  F+ M  E   PN      +L  CG +G
Sbjct: 506 NTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLG 565

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A + G+ IH+ +     +   + V  ALI+MY KCG   D+R +FD + ++D+  WN++I
Sbjct: 566 ASKIGQQIHT-VAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTII 623

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG G++A++++  M    + P+++TF+GLL+AC+HAGLV+EG +FF +M  +Y +
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGL 683

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P  EHY CMV+LL R G V+ A + + DM IEPD+V+W  LLGAC++H N  +G++ AE
Sbjct: 684 TPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAE 743

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L     +N+G YV+LSNIY+++G W  VA VR +MK++GV KEPGCS  ++ +K+H F+
Sbjct: 744 KLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFV 803

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD +H + +EI   LEE+   LKA GYVP T+ VLHDI E+QK++SL  HSEKLAVA+ 
Sbjct: 804 TGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYC 863

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T  G  I+I+KNLR+C DCH   K +S  T R+I +RD NRFHHF NG+CSC D+W
Sbjct: 864 LLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 13/238 (5%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           K +   T+L+   A+ G +  A  LF  +P+  +VS   ++T Y + G V  A+ LFD M
Sbjct: 320 KSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKM 379

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             ++ + W  MI GYAQ+G + EAL L + +    + P+  +  ++  AC  I ALE+G 
Sbjct: 380 PFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGT 439

Query: 128 WIHSYIENSRNIKVNVQVGT----ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
            +HS       +KV  Q  +    ALI MY KC +++ AR VF R+  KD+V WNS +  
Sbjct: 440 QVHSLA-----VKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAA 494

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              +    +A   F+ M    L   D+++  ++SA AHA   NE    F TM  E+ +
Sbjct: 495 LVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 27/349 (7%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+++     +++  Y + GD+  A +LF  MP R + S  +MLT Y    ++  AR LF+
Sbjct: 123 LERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFE 182

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC---GQIGA 122
            M E+++V W VMI GY +     +A  +F +M  E + P++    + LSA    G +  
Sbjct: 183 KMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDV 242

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL-VFDRVNDKDVVVWNSMI 181
           LES R     +      + +V +GTA++N+YS+  S+ D  +  F+ + +++   W++MI
Sbjct: 243 LESLR----VLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMI 298

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              + HG   DA     E   ++   S      L++  A  G +++ R  F     E   
Sbjct: 299 AALS-HGGRIDAAIAVYERDPVK---SIACRTALITGLAQCGRIDDARILF-----EQIP 349

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI--ALGEKI 299
           EP V  +  ++    + G V EA +L   M    +++ W  ++     +G    ALG   
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSEEALG--- 405

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGC 348
               + Q L  SG    LS++ +       +  + T  +   +  + GC
Sbjct: 406 ----LLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC 450



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 13  STSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV 72
           S  + DL  R G V  A ++F  MP+R +++  +M++ Y   G   AAR L+D +   ++
Sbjct: 38  SARIRDL-GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
               +++ GY + G   EA  +F  ML    E N V   A++S   Q G +   R +   
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDA 152

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGK 191
           + +      +V    +++  Y     + DAR +F+++ ++++V W  MI GY  +   GK
Sbjct: 153 MPSR-----DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGK 207

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--EGRRFFNTMKDEYAIEPKVEHYG 249
            A  +F +M R  L P    F   LSA    G ++  E  R    +  +   E  V    
Sbjct: 208 -AWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLR---VLALKTGFERDVVIGT 263

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            ++N+ SR   V +      +  IE +   W T++ A    G I
Sbjct: 264 AILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRI 307



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 62/256 (24%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
            + G V  AR +FD M  +D++ WN MI  Y  +G+ + A  L+                
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLY---------------- 88

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
                     A+  G               N++ G  L++ Y + G + +AR VFD + +
Sbjct: 89  ---------DAISGG---------------NMRTGAILLSGYGRLGRVLEARRVFDGMLE 124

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DI-TFIGLLSACAHAGLVNEGR 229
           ++ V WN+MI  Y  +G    A +LF+ M      PS D+ ++  +L+   H+  + + R
Sbjct: 125 RNTVAWNAMISCYVQNGDITMARRLFDAM------PSRDVSSWNSMLTGYCHSLQMVDAR 178

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE---EAYKLVMDMKIE---PDSVLWGTL 283
             F  M +   +   V        ++S  G++E   +A+ +   M  E   PD   + + 
Sbjct: 179 NLFEKMPERNLVSWTV--------MISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASA 230

Query: 284 LGACRLHGNIALGEKI 299
           L A +  GN+ + E +
Sbjct: 231 LSAVKGLGNLDVLESL 246


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/486 (46%), Positives = 320/486 (65%), Gaps = 8/486 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG---EVA 58
           +K   D D+YV  +L+++YA  G++  A KLF   P    VS  ++L  Y K+G   +V 
Sbjct: 156 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVM 215

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
            A  LF++M+EKD+V W+ +I GY Q+G+  EALV+F  M A  +  +EV  V+VLSAC 
Sbjct: 216 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 275

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS----KCGSLKDARLVFDRVNDKDV 174
            +  +++G+ IH  +     I+  V +  ALI+MYS    KCG +++A  VF+ + +K V
Sbjct: 276 HLSIVKTGKMIHGLVIR-MGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGV 334

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
             WN++I+G A++G  + +L +F+EM    + P++ITF+G+L AC H GLV+EGR  F +
Sbjct: 335 SSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFAS 394

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           M +++ IEP V+HYGCMV+LL RAG + EA KL+  M + PD   WG LLGAC+ HG+  
Sbjct: 395 MIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 454

Query: 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           +GE++   LI     + G +VLLSNI+A+ G+W+ V  VR +MK++GV K PGCS IE +
Sbjct: 455 MGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 514

Query: 355 NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSE 414
             VHEFLAGD  HP   ++  ML E+   LK EGY P T  V  DI E++K+ +L  HSE
Sbjct: 515 GVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSE 574

Query: 415 KLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTC 474
           KLA+AFGL++  P T I+I+KNLR+C DCH   KLISK   R+I++RDR+RFH+F  G C
Sbjct: 575 KLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGAC 634

Query: 475 SCGDYW 480
           SC DYW
Sbjct: 635 SCMDYW 640



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 142/337 (42%), Gaps = 89/337 (26%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD +E  +   WN M+  Y Q   A +AL+L++ M+   V P+  T   V+ AC  +  
Sbjct: 85  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRL 143

Query: 123 LE-SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD-------------- 167
           LE  G+ IH ++        +V V   LINMY+ CG+++DAR +FD              
Sbjct: 144 LEFGGKEIHDHVLKV-GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 202

Query: 168 --------------------RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
                                +++KD+V W+++I GY  +G  ++AL +F EM    ++ 
Sbjct: 203 AGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 262

Query: 208 SDITFIGLLSACAHAGLVNEGR-------------------------------------- 229
            ++  + +LSACAH  +V  G+                                      
Sbjct: 263 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENA 322

Query: 230 -RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLG 285
              FN M+     E  V  +  ++  L+  G VE +  +  +MK   + P+ + +  +LG
Sbjct: 323 LEVFNGME-----EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLG 377

Query: 286 ACRLHGNIALGE-----KIAEYLISQNLANSGTYVLL 317
           ACR  G +  G       I ++ I  N+ + G  V L
Sbjct: 378 ACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDL 414


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/480 (43%), Positives = 319/480 (66%), Gaps = 2/480 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+F    D+YV  SLV +YA  G + +A ++F  M  R +VS T+M+  Y K G V  AR
Sbjct: 144 VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAR 203

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M  +++  W++MI+GYA++    +A+ LF  M  E V  NE   V+V+S+C  +G
Sbjct: 204 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLG 263

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G   + Y+  S ++ VN+ +GTAL++M+ +CG ++ A  VF+ + + D + W+S+I
Sbjct: 264 ALEFGERAYEYVVKS-HMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSII 322

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A+HG    A+  F++M  +   P D+TF  +LSAC+H GLV +G   +  MK ++ I
Sbjct: 323 KGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGI 382

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGC+V++L RAG++ EA   ++ M ++P++ + G LLGAC+++ N  + E++  
Sbjct: 383 EPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGN 442

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     +SG YVLLSNIYA  G WD +  +R +MKEK V+K PG S IE+  K+++F 
Sbjct: 443 MLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFT 502

Query: 362 AG-DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
            G D +HP+  +I    EEI G ++  GY   T     D+ E++K++S+ +HSEKLA+A+
Sbjct: 503 MGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAY 562

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G++ T+PGT+I+IVKNLRVC DCH V KLIS+  GR++++RDRNRFHHF NG CSC DYW
Sbjct: 563 GMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/434 (48%), Positives = 294/434 (67%), Gaps = 1/434 (0%)

Query: 47   MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
            ++  Y+K G V  A+ +FDDM E++V  W +MI G AQHG  ++A   F +ML E + P+
Sbjct: 665  LVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPD 724

Query: 107  EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
              T V++LSAC   GALE  + +H++   S  +  +++VG AL++MY+KCGS+ DAR VF
Sbjct: 725  ATTYVSILSACASTGALEWVKEVHNH-AVSAGLVSDLRVGNALVHMYAKCGSIDDARSVF 783

Query: 167  DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            D + ++DV  W  MI G A HG G +AL  F +M     KP+  +++ +L+AC+HAGLV+
Sbjct: 784  DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVD 843

Query: 227  EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            EGRR F +M  +Y IEP +EHY CMV+LL RAG +EEA   +++M IEPD   WG LLGA
Sbjct: 844  EGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGA 903

Query: 287  CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            C  +GN+ + E  A+  +     ++ TYVLLSNIYAA G W+    VR++M+ KG++KEP
Sbjct: 904  CVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEP 963

Query: 347  GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
            G S IE+ N++H F+ GD  HP+SKEIY  L ++   LKA+GYVP T++VL +  ++ K+
Sbjct: 964  GRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKE 1023

Query: 407  NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             +L  HSEKLA+ +GL+ TQ    I++ KNLRVC DCH   K ISK TGR+I+ RD  RF
Sbjct: 1024 QALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRF 1083

Query: 467  HHFVNGTCSCGDYW 480
            HHF +G CSCGDYW
Sbjct: 1084 HHFKDGVCSCGDYW 1097



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 175/305 (57%), Gaps = 11/305 (3%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +++L     +L  Y + G +  AR +FD + +K++  W  MI GYA++G A +A+ ++ +
Sbjct: 150 EQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E  +PNE+T +++L AC     L+ G+ IH++I  S   + +V+V TAL+NMY KCG
Sbjct: 210 MRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQS-GFQSDVRVETALVNMYVKCG 268

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S++DA+L+FD++ +++V+ W  MI G A +G G++A  LF +M R    P+  T++ +L+
Sbjct: 269 SIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILN 328

Query: 218 ACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           A A AG +   +    + +    A++ +V +   +V++ +++G +++A ++V D   E D
Sbjct: 329 ANASAGALEWVKEVHSHAVNAGLALDLRVGN--ALVHMYAKSGSIDDA-RVVFDGMTERD 385

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWDGVARV 333
              W  ++G    HG     E  + +L  Q    L N  TY+ + N  +AI +   +  V
Sbjct: 386 IFSWTVMIGGLAQHGRGQ--EAFSLFLQMQRNGCLPNLTTYLSILNA-SAIASTSALEWV 442

Query: 334 RTLMK 338
           + + K
Sbjct: 443 KVVHK 447



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 136/245 (55%), Gaps = 4/245 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G +  AR++FD M ++DV+ WN M+ G AQ+G  +EA  +F +M  E + P+
Sbjct: 464 LIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPD 523

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T +++L+  G   ALE    +H +   +  I  + +VG+A I+MY +CGS+ DARL+F
Sbjct: 524 STTYLSLLNTHGSTDALEWVNEVHKHAVETGLIS-DFRVGSAFIHMYIRCGSIDDARLLF 582

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D+++ + V  WN+MI G A    G++AL LF +M R    P   TFI +LSA      + 
Sbjct: 583 DKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALE 642

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             +   +   D   ++ +V +   +V+  S+ G V+ A K V D  +E +   W  ++G 
Sbjct: 643 WVKEVHSHATDAGLVDLRVGN--ALVHTYSKCGNVKYA-KQVFDDMVERNVTTWTMMIGG 699

Query: 287 CRLHG 291
              HG
Sbjct: 700 LAQHG 704



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK G +  ARV+FD M E+D+  W VMI G AQHG   EA  LF +M      PN  T 
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTY 424

Query: 111 VAVL--SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           +++L  SA     ALE  + +H + E +  I  ++++G ALI+MY+KCGS+ DARLVFD 
Sbjct: 425 LSILNASAIASTSALEWVKVVHKHAEEAGFIS-DLRIGNALIHMYAKCGSIDDARLVFDG 483

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           + D+DV+ WN+M+ G A +G G +A  +F +M +  L P   T++ LL+
Sbjct: 484 MCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 4/241 (1%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y + G +  AR+LFD +  + V  WN MI G AQ     EAL LF +M  E   P+  T 
Sbjct: 569 YIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTF 628

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           + +LSA     ALE  + +HS+  ++    V+++VG AL++ YSKCG++K A+ VFD + 
Sbjct: 629 INILSANVDEEALEWVKEVHSHATDAG--LVDLRVGNALVHTYSKCGNVKYAKQVFDDMV 686

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +++V  W  MI G A HG G DA   F +M R  + P   T++ +LSACA  G +   + 
Sbjct: 687 ERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKE 746

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
             N       +   +     +V++ ++ G +++A  +  DM +E D   W  ++G    H
Sbjct: 747 VHNHAVSA-GLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQH 804

Query: 291 G 291
           G
Sbjct: 805 G 805


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/467 (43%), Positives = 312/467 (66%), Gaps = 1/467 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++ +L +  +L+D++A  G++ +A  +F  M  R ++S T+++T +A    +  AR  FD
Sbjct: 271 VEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFD 330

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M E+D V W  MIDGY +     E L LFR M    V+P+E T V++L+AC  +GALE 
Sbjct: 331 QMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALEL 390

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G W  +YI+ ++ IK +  +G ALI+MY KCG+++ A+ +F+ +  KD   W +MIVG A
Sbjct: 391 GEWAKTYIDKNK-IKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLA 449

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
            +G G++AL +F+ M    + P +IT+IG++ AC H GLV +G+ FF+ M  ++ I+P +
Sbjct: 450 NNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNL 509

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
            HYGCMV+LL RAG ++EA +++M+M ++P+S++WG+LLGACR+H N+ L E  A  ++ 
Sbjct: 510 THYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE 569

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               N   YVLL NIYAA   W  +  VR +M E+G++K PGCS +E++  V+EF+AGD 
Sbjct: 570 LEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDK 629

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP+SKEIY  LE +   L   GY P T  V  D+GE+ K+ +L +HSEKLA+A+ LIS+
Sbjct: 630 SHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISS 689

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
             G +I+IVKNLR+C DCH +  ++SK   R++++RD+ RFHHF +G
Sbjct: 690 GKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 135/272 (49%), Gaps = 21/272 (7%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           LS+  LF T           +  C  + G+V  AR +FD++ +  V  WN MI GY++  
Sbjct: 63  LSSNHLFLTK--------VIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRIN 114

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI--HSYIENSRNIKVNVQ 144
            +   + L++ ML   ++P+  T   +L    +  AL+ G+ +  H+ I    +  + VQ
Sbjct: 115 CSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQ 174

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM---C 201
            G   I+++S CG +  AR +FD  +  +VV WN ++ GY      +++ +LF EM   C
Sbjct: 175 KG--FIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKC 232

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              + P+ +T + +LSAC+    +  G+  +N    E  +EP +     ++++ +  G++
Sbjct: 233 EC-VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEM 291

Query: 262 EEAYKLVMDMKIEPDSVLWGTLL----GACRL 289
           + A  +  +MK   D + W +++      CR+
Sbjct: 292 DAARGVFDEMKTR-DVISWTSIVTGFANTCRI 322



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 137/311 (44%), Gaps = 64/311 (20%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD +L+V    + L++  G V  A K+F       +V+   +L+ Y +      ++ LF 
Sbjct: 167 LDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFI 226

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
           +ME+K                              E V PN VT V +LSAC ++  L  
Sbjct: 227 EMEKK-----------------------------CECVSPNSVTLVLMLSACSKLKDLVG 257

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G+ I++       ++ N+ +  ALI+M++ CG +  AR VFD +  +DV+ W S++ G+A
Sbjct: 258 GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFA 317

Query: 186 --------------------------------MHGFGKDALQLFNEMCRIRLKPSDITFI 213
                                           M+ F K+ L LF +M    +KP + T +
Sbjct: 318 NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRF-KEVLTLFRDMQMSNVKPDEFTMV 376

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L+ACAH G +  G  +  T  D+  I+        ++++  + G VE+A K+  +M+ 
Sbjct: 377 SILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ- 434

Query: 274 EPDSVLWGTLL 284
           + D   W  ++
Sbjct: 435 KKDKFTWTAMI 445



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 34/208 (16%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  +  D ++  +L+D+Y + G+V  A+K+F  M                          
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM-------------------------- 433

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                ++KD   W  MI G A +G   EAL +F  ML   V P+E+T + V+ AC  +G 
Sbjct: 434 -----QKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGL 488

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           +  G+   S +     IK N+     ++++  + G LK+A  ++ +     + +VW S++
Sbjct: 489 VAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLL 548

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSD 209
               +H   + A    NE+  + L+P +
Sbjct: 549 GACRVHKNVQLAEMAANEI--LELEPEN 574


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/479 (45%), Positives = 309/479 (64%), Gaps = 33/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ DL+VS +LV ++   GD++SA+ L                             
Sbjct: 541 MKAGLESDLHVSNALVSMFVNCGDLMSAKNL----------------------------- 571

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             F+DM ++D+V WN +I G+ QHG    A   F+ M    ++P+++T   +L+AC    
Sbjct: 572 --FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE 629

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  GR +H+ I  +     +V VGT LI+MY+KCGS++DA  VF ++  K+V  W SMI
Sbjct: 630 ALTEGRRLHALITEAA-FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMI 688

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG GK+AL+LF +M +  +KP  ITF+G LSACAHAGL+ EG   F +MK E+ I
Sbjct: 689 AGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNI 747

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+L  RAG + EA + ++ M++EPDS +WG LLGAC++H N+ L EK A+
Sbjct: 748 EPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQ 807

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             +  +  ++G +V+LSNIYAA G W  VA++R +M ++GV K+PG S IE+  KVH F 
Sbjct: 808 KKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFY 867

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           + D  HP+++EI+  LE ++  ++  GYVP T+ VLHD+ + +K+ +L  HSE+LA+ +G
Sbjct: 868 SDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYG 927

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T P T I I KNLRVC DCH   K ISK T R+I+ RD NRFHHF +G CSCGD+W
Sbjct: 928 LLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 172/339 (50%), Gaps = 35/339 (10%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  +    T++  YAK G   +A+ +FDDM EKDV  WN+++ GY QHGL  EA  L  +
Sbjct: 142 QPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+ + V+P++ T V++L+AC     ++ GR +++ I  +     ++ VGTALINM+ KCG
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTALINMHIKCG 260

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            + DA  VFD +  +D+V W SMI G A HG  K A  LF  M    ++P  + F+ LL 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 218 ACAHAGLVNEGRRFFNTMKD-----------------------EYAIE-------PKVEH 247
           AC H   + +G++    MK+                       E A+E         V  
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  M+   ++ G+++EA+     M    IEP+ V + ++LGAC     +  G++I +++I
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 305 SQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                ++      L ++YA  G+     RV   + ++ V
Sbjct: 441 EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 180/333 (54%), Gaps = 19/333 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  + K G++  A  +FD++  +D+V W  MI G A+HG   +A  LF+RM  E V+
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++V  V++L AC    ALE G+ +H+ ++        + VGTA+++MY+KCGS++DA  
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD V  ++VV W +MI G+A HG   +A   FN+M    ++P+ +TF+ +L AC+    
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 225 VNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  G++  + + +  Y  + +V     ++++ ++ G +++A++ V +   + + V W  +
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHR-VFEKISKQNVVAWNAM 485

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAA-----IGNWDGVARVRTLM 337
           + A   H          + L+ + +  NS T+  + N+  +     +G W     V  L+
Sbjct: 486 ITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW-----VHFLI 540

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
            + G++ +   S+  +S  V+    GDL   K+
Sbjct: 541 MKAGLESDLHVSNALVSMFVN---CGDLMSAKN 570



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 138/247 (55%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L+ YAK G +  A  +F+ + +++VV WN MI  Y QH   + AL  F+ +L E ++
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  ++L+ C    +LE G+W+H  I  +  ++ ++ V  AL++M+  CG L  A+ 
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKA-GLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +D+V WN++I G+  HG  + A   F  M    +KP  ITF GLL+ACA    
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EGRR  + +  E A +  V     ++++ ++ G +E+A+++   +  + +   W +++
Sbjct: 631 LTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMI 688

Query: 285 GACRLHG 291
                HG
Sbjct: 689 AGYAQHG 695



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 143/278 (51%), Gaps = 12/278 (4%)

Query: 19  LYARGGDVLSAEKLFAT---MPQRSLVSLTTMLTCYAKQGEVAAAR-VLFDDMEEKDVVC 74
           +Y+R   V S ++  A    +P    +    MLT  +  G     R V+F D+  KD   
Sbjct: 21  IYSRNSWVFSRQRFLACSSCVPTHEGIETLRMLTT-SFSGRCPKGRCVVFADI--KDTQK 77

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
            N +++  ++ G  NEA+ +  R+ +  ++    T  A+L  C +   L  G  I+++I+
Sbjct: 78  ANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIK 137

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            S  ++ ++ +   LINMY+KCG+   A+ +FD + +KDV  WN ++ GY  HG  ++A 
Sbjct: 138 KS-GVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAF 196

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVN 253
           +L  +M +  +KP   TF+ +L+ACA A  V++GR  +N  +K  +  +  V     ++N
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG--TALIN 254

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  + G + +A K V D     D V W +++     HG
Sbjct: 255 MHIKCGDIGDATK-VFDNLPTRDLVTWTSMITGLARHG 291


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/479 (45%), Positives = 309/479 (64%), Gaps = 33/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ DL+VS +LV ++   GD++SA+ L                             
Sbjct: 541 MKAGLESDLHVSNALVSMFVNCGDLMSAKNL----------------------------- 571

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             F+DM ++D+V WN +I G+ QHG    A   F+ M    ++P+++T   +L+AC    
Sbjct: 572 --FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPE 629

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  GR +H+ I  +     +V VGT LI+MY+KCGS++DA  VF ++  K+V  W SMI
Sbjct: 630 ALTEGRRLHALITEAA-FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMI 688

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG GK+AL+LF +M +  +KP  ITF+G LSACAHAGL+ EG   F +MK E+ I
Sbjct: 689 TGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNI 747

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP++EHYGCMV+L  RAG + EA + ++ M++EPDS +WG LLGAC++H N+ L EK A+
Sbjct: 748 EPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQ 807

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             +  +  ++G +V+LSNIYAA G W  VA++R +M ++GV K+PG S IE+  KVH F 
Sbjct: 808 KKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFY 867

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           + D  HP+++EI+  LE ++  ++  GYVP T+ VLHD+ + +K+ +L  HSE+LA+ +G
Sbjct: 868 SDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYG 927

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T P T I I KNLRVC DCH   K ISK T R+I+ RD NRFHHF +G CSCGD+W
Sbjct: 928 LLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 172/339 (50%), Gaps = 35/339 (10%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  +    T++  YAK G   +A+ +FDDM EKDV  WN+++ GY QHGL  EA  L  +
Sbjct: 142 QPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+ + V+P++ T V++L+AC     ++ GR +++ I  +     ++ VGTALINM+ KCG
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKA-GWDTDLFVGTALINMHIKCG 260

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            + DA  VFD +  +D+V W SMI G A HG  K A  LF  M    ++P  + F+ LL 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 218 ACAHAGLVNEGRRFFNTMKD-----------------------EYAIE-------PKVEH 247
           AC H   + +G++    MK+                       E A+E         V  
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  M+   ++ G+++EA+     M    IEP+ V + ++LGAC     +  G++I +++I
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 305 SQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                ++      L ++YA  G+     RV   + ++ V
Sbjct: 441 EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 180/333 (54%), Gaps = 19/333 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  + K G++  A  +FD++  +D+V W  MI G A+HG   +A  LF+RM  E V+
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++V  V++L AC    ALE G+ +H+ ++        + VGTA+++MY+KCGS++DA  
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD V  ++VV W +MI G+A HG   +A   FN+M    ++P+ +TF+ +L AC+    
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSA 428

Query: 225 VNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  G++  + + +  Y  + +V     ++++ ++ G +++A++ V +   + + V W  +
Sbjct: 429 LKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHR-VFEKISKQNVVAWNAM 485

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAA-----IGNWDGVARVRTLM 337
           + A   H          + L+ + +  NS T+  + N+  +     +G W     V  L+
Sbjct: 486 ITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW-----VHFLI 540

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
            + G++ +   S+  +S  V+    GDL   K+
Sbjct: 541 MKAGLESDLHVSNALVSMFVN---CGDLMSAKN 570



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 138/247 (55%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L+ YAK G +  A  +F+ + +++VV WN MI  Y QH   + AL  F+ +L E ++
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  ++L+ C    +LE G+W+H  I  +  ++ ++ V  AL++M+  CG L  A+ 
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKA-GLESDLHVSNALVSMFVNCGDLMSAKN 570

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +D+V WN++I G+  HG  + A   F  M    +KP  ITF GLL+ACA    
Sbjct: 571 LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEA 630

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EGRR  + +  E A +  V     ++++ ++ G +E+A+++   +  + +   W +++
Sbjct: 631 LTEGRR-LHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMI 688

Query: 285 GACRLHG 291
                HG
Sbjct: 689 TGYAQHG 695



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 143/278 (51%), Gaps = 12/278 (4%)

Query: 19  LYARGGDVLSAEKLFAT---MPQRSLVSLTTMLTCYAKQGEVAAAR-VLFDDMEEKDVVC 74
           +Y+R   V S ++  A    +P    +    MLT  +  G     R V+F D+  KD   
Sbjct: 21  IYSRNSWVFSRQRFLACSSCVPTHEGIETLRMLTT-SFSGRCPKGRCVVFADI--KDTQK 77

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
            N +++  ++ G  NEA+ +  R+ +  ++    T  A+L  C +   L  G  I+++I+
Sbjct: 78  ANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIK 137

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            S  ++ ++ +   LINMY+KCG+   A+ +FD + +KDV  WN ++ GY  HG  ++A 
Sbjct: 138 KS-GVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAF 196

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVN 253
           +L  +M +  +KP   TF+ +L+ACA A  V++GR  +N  +K  +  +  V     ++N
Sbjct: 197 KLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG--TALIN 254

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  + G + +A K V D     D V W +++     HG
Sbjct: 255 MHIKCGDIGDATK-VFDNLPTRDLVTWTSMITGLARHG 291


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/480 (45%), Positives = 316/480 (65%), Gaps = 8/480 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVL 63
            D +    L+   AR   +   E L A   +   V+L     +++  Y   G   +A  +
Sbjct: 114 PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKV 173

Query: 64  FDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           FD+M    +++V WN M++ +A +G  NE L +F  ML     P+  T V+VL+AC + G
Sbjct: 174 FDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFG 233

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
           AL  GR +H Y+E    ++ N  V  ALI++Y+KCGS+ DAR +F+ +   + VV W S+
Sbjct: 234 ALALGRRVHVYVEKVGLVE-NSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSL 292

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           IVG A +GFGK+AL+LF+ M R +L P++IT +G+L AC+H GLV++G R+F+ MK++Y 
Sbjct: 293 IVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYG 352

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P++EH GCMV+LL RAG+VEEAY  ++ M +EP++V+W TLLG+C +H  + LG+   
Sbjct: 353 ISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAW 412

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E L+  +  +SG YVLLSN+YAA+G W  V  +R  M +  V+K PG S +EL N V+EF
Sbjct: 413 ERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEF 472

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP+S++IY ML EI   L+ EGY+P+T  VL DI E++K+ +L  HSE+LA+AF
Sbjct: 473 VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAF 532

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ + PG  I+I+KNLR+C DCH  F LISK   R+I++RDR+RFHHF  G CSC DYW
Sbjct: 533 ALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 9/197 (4%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-VQVGTAL 149
           AL L RR LA    P+  T   ++ AC ++ AL  G  +H+  E ++N  V  V V  +L
Sbjct: 103 ALELHRRRLAL---PDTHTYPPLIQACARLLALREGECLHA--EAAKNGFVTLVFVQNSL 157

Query: 150 INMYSKCGSLKDARLVFDR--VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           +++Y  CG  + A  VFD   V  +++V WNSM+  +A +G   + L +F EM  +   P
Sbjct: 158 VHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAP 217

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
              T + +L+ACA  G +  GRR  +   ++  +         +++L ++ G V +A ++
Sbjct: 218 DGFTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRI 276

Query: 268 VMDMKIEPDSVLWGTLL 284
             +M +    V W +L+
Sbjct: 277 FEEMGLGRTVVSWTSLI 293



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAAAR 61
           K  L ++ +VS +L+DLYA+ G V  A ++F  M   R++VS T+++             
Sbjct: 247 KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIV------------ 294

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              G A +G   EAL LF  M  EK+ P E+T V VL AC   G
Sbjct: 295 -------------------GLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCG 335

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            ++ G      ++    I   ++    ++++  + G +++A   +     + + VVW ++
Sbjct: 336 LVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTL 395

Query: 181 IVGYAMH 187
           +   AMH
Sbjct: 396 LGSCAMH 402


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/483 (45%), Positives = 301/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK     D  V T+L+D+Y + G      ++F       + S   ++   ++  +V+ A 
Sbjct: 180 VKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEAL 239

Query: 62  VLFDDM----EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
           +LF +      E +VV W  ++    Q+G   EA+ LFR M +  VEPN VT   VL A 
Sbjct: 240 LLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAF 299

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + AL  GR  H +    +    +V VG+AL++MY+KCG  + AR +FD +  ++VV W
Sbjct: 300 ANVAALMHGRSAHCF-SLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSW 358

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI GYAMHG   +A+QLF  M + + KP  +TF  +L AC+ AGL  EGRR+FN M+ 
Sbjct: 359 NAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQ 418

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            + I P++EHY CMV LL R+G+++EAY L+ +M  EPDS +WG+LLG+CR++GN+ L E
Sbjct: 419 GHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAE 478

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             AE L      N+G YVLLSNIYA+   WDGV RVR  MK  G++KE GCS IE+ NKV
Sbjct: 479 VAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKV 538

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H  LAGD  HP    I   L ++   +   G+ P    VLHD+ E++K N L VHSEKLA
Sbjct: 539 HMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLA 598

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VA GLIST+PGT ++++KNLR+C DCH   K IS F  R+I +RD NRFHHF +G CSCG
Sbjct: 599 VALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCG 658

Query: 478 DYW 480
           DYW
Sbjct: 659 DYW 661



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 147/328 (44%), Gaps = 42/328 (12%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L +D +V++SL+  Y R G   +A  +F  MP++++V  + ++  Y+ +G+  AA  L +
Sbjct: 48  LAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLE 107

Query: 66  DME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            M     E +V+ WN ++ G  + G A +A+    RM +E   P+       LSA G + 
Sbjct: 108 QMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVK 167

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +  G+ +H Y+  +   +++  V TALI+MY KCG   +   VF   +  DV   N+++
Sbjct: 168 EVSVGKQVHGYVVKA-GCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALV 226

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G + +    +AL LF E     ++ + +++  +++ C   G   E    F TM+    +
Sbjct: 227 AGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQ-SIGV 285

Query: 242 EPKVEHYGC-----------------------------------MVNLLSRAGQVEEAYK 266
           EP      C                                   +V++ ++ G+   A +
Sbjct: 286 EPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHA-R 344

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIA 294
            + D     + V W  ++G   +HG+ A
Sbjct: 345 TIFDAMPSRNVVSWNAMIGGYAMHGDAA 372


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/421 (50%), Positives = 284/421 (67%), Gaps = 1/421 (0%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LF+ +  KD V WN MI GYA++G A E+L LFRRM  +   P++VT +AVL AC Q
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQ 376

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           I AL  G  IHSY+   +    N  VGTAL++MYSKCGSL  +R VFD + DK +V W++
Sbjct: 377 IAALRYGMSIHSYLVK-KGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSA 435

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           M+ GY +HG G++A+ + + M    + P +  F  +LSAC+HAGLV EG+  F  M+ EY
Sbjct: 436 MVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEY 495

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            ++P + HY CMV+LL RAG ++EAY ++  M+I+P S +W  LL A RLH NI L E  
Sbjct: 496 NVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEIS 555

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A+ +   N     +Y+ LSNIYAA   WD V RVR +++ KG++K PGCS IEL N VH 
Sbjct: 556 AQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHR 615

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD  H ++++IY  L E+   LK  GY P T +V +D+ E+ K+  L  HSE+LA+A
Sbjct: 616 FLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIA 675

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           F LI+T PGT I+I KNLRVC DCH V KLIS+ TGR+I+MRD +RFHHF+ G CSCGDY
Sbjct: 676 FALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDY 735

Query: 480 W 480
           W
Sbjct: 736 W 736



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 168/354 (47%), Gaps = 41/354 (11%)

Query: 29  AEKLFATMPQRSLVSLTTMLTC-----YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
            ++L A M   S++   T L       YA  G ++ A V+FD +  K+   WN MI GYA
Sbjct: 78  GQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYA 137

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
            +GL  ++LVL+R ML      +  T   VL ACG +  +E GR +HS +     ++ ++
Sbjct: 138 SNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVC-GLESDI 196

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            VG +L+ MY+K G +  AR+VFDR+ ++D+  WN+MI GYA +     A  +F+ M + 
Sbjct: 197 YVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKA 256

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGR---------------RFF-----------NTMKD 237
            L     T +GLLSACA    V EG+               +FF           N M D
Sbjct: 257 GLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVD 316

Query: 238 EYAIEPKVE-----HYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRL 289
              +  +V       +  M+   +R G   E+ +L   M ++   PD V +  +LGAC  
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQ 376

Query: 290 HGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              +  G  I  YL+ +   AN+     L ++Y+  G+     RV   M +K +
Sbjct: 377 IAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSL 430



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 43/292 (14%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L  YAK G++  AR++FD M E+D+  WN MI GYA++  +  A ++F  M    +  
Sbjct: 201 SLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFA 260

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T + +LSAC  + A++ G+ IH Y   +     N     +LI MY  C  + DAR +
Sbjct: 261 DCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRL 320

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC------ 219
           F+RV  KD V WNSMI+GYA +G   ++L+LF  M      P  +TFI +L AC      
Sbjct: 321 FERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAAL 380

Query: 220 -----AHAGLVNEG------------------------RRFFNTMKDEYAIEPKVEHYGC 250
                 H+ LV +G                        RR F+ M D+  +      +  
Sbjct: 381 RYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS-----WSA 435

Query: 251 MVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
           MV      G+  EA  ++  MK   + PD+ ++ ++L AC   G +  G++I
Sbjct: 436 MVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEI 487



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K G +A +R +FD+M +K +V W+ M+ GY  HG   EA+ +   M A  V 
Sbjct: 403 TALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVI 462

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+     ++LSAC   G +  G+ I   +E   N+K  +   + ++++  + G L +A +
Sbjct: 463 PDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYV 522

Query: 165 VFDRVNDKDVV-VWNSMIVGYAMH 187
           +   +  K    +W +++    +H
Sbjct: 523 IIRTMEIKPTSDIWAALLTASRLH 546



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 2/173 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A+L +     + + G+ +H+++ +   ++ N  + T L   Y+ CG +  A ++FD +  
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           K+  +WN MI GYA +G    +L L+ EM     +  + T+  +L AC    LV  GRR 
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            + +     +E  +     ++ + ++ G +  A ++V D   E D   W T++
Sbjct: 184 HSEVV-VCGLESDIYVGNSLLAMYAKFGDMGTA-RMVFDRMAERDLTSWNTMI 234


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/466 (46%), Positives = 316/466 (67%), Gaps = 14/466 (3%)

Query: 24  GDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
            DV   E + + + +    SL     ++L  YA  G+VA+A  +FD M EKD+V WN +I
Sbjct: 2   ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 61

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
           +G+A++G   EAL L+  M ++ ++P+  T V++LSAC +IGAL  G+ +H Y+     I
Sbjct: 62  NGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-----I 116

Query: 140 KV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           KV    N+     L+++Y++CG +++A+ +FD + DK+ V W S+IVG A++GFGK+A++
Sbjct: 117 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIE 176

Query: 196 LFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
           LF  M     L P +ITF+G+L AC+H G+V EG  +F  M++EY IEP++EH+GCMV+L
Sbjct: 177 LFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDL 236

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
           L+RAGQV++AY+ +  M ++P+ V+W TLLGAC +HG+  L E     ++     +SG Y
Sbjct: 237 LARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDY 296

Query: 315 VLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIY 374
           VLLSN+YA+   W  V ++R  M   GV+K PG S +E+ N+VHEFL GD  HP+S  IY
Sbjct: 297 VLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIY 356

Query: 375 MMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIV 434
             L+E+ G L++EGYVPQ   V  D+ E++K+N++  HSEK+A+AF LIST   + I +V
Sbjct: 357 AKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVV 416

Query: 435 KNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           KNLRVC DCH   KL+SK   R+I++RDR+RFHHF NG+CSC DYW
Sbjct: 417 KNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 35/209 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L+ S  L+DLYAR G V  A+ LF                            
Sbjct: 116 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF---------------------------- 147

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
              D+M +K+ V W  +I G A +G   EA+ LF+ M + E + P E+T V +L AC   
Sbjct: 148 ---DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 204

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +     I+  ++    ++++ ++ G +K A   +       +VV+W +
Sbjct: 205 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 264

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           ++    +H  G   L  F  +  ++L+P+
Sbjct: 265 LLGACTVH--GDSDLAEFARIQILQLEPN 291


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/436 (49%), Positives = 293/436 (67%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++  YAK   V  A+ LF+ M  KD+V W VMI  YA    A E+LVLF RM  E V 
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGVV 198

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++V  V V++AC ++GA+   R+ + YI  +    ++V +GTA+I+MY+KCGS++ AR 
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRN-GFSLDVILGTAMIDMYAKCGSVESARE 257

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+ +K+V+ W++MI  Y  HG GKDA+ LF+ M    + P+ +TF+ LL AC+HAGL
Sbjct: 258 VFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGL 317

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG RFFN+M +E+A+ P V+HY CMV+LL RAG+++EA +L+  M +E D  LW  LL
Sbjct: 318 IEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALL 377

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H  + L EK A  L+     N G YVLLSNIYA  G W+ VA+ R +M ++ ++K
Sbjct: 378 GACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKK 437

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG + IE+ NK ++F  GD  HP+SKEIY ML  +   L+  GYVP T  VL D+ E+ 
Sbjct: 438 IPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEV 497

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           KQ  L  HSEKLA+AFGLI+   G  I+I KNLRVC DCH   K++S    R I++RD N
Sbjct: 498 KQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDAN 557

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +GTCSCGDYW
Sbjct: 558 RFHHFNDGTCSCGDYW 573



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 8/283 (2%)

Query: 13  STSLVDLYARGGDVLSAEKLFATM----PQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           + S +DL  R  +V    ++ A +      + LV    +L  YA+   +  A  LFD + 
Sbjct: 3   AESCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLT 62

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +D   W+VM+ G+A+ G        FR +L   V P+  T   V+  C     L+ GR 
Sbjct: 63  MRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRV 122

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  +     +  +  V  +L++MY+KC  ++DA+ +F+R+  KD+V W  MI  YA   
Sbjct: 123 IHDVVLK-HGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DC 180

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
              ++L LF+ M    + P  +  + +++ACA  G ++   RF N           V   
Sbjct: 181 NAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRA-RFANDYIVRNGFSLDVILG 239

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             M+++ ++ G VE A ++   MK E + + W  ++ A   HG
Sbjct: 240 TAMIDMYAKCGSVESAREVFDRMK-EKNVISWSAMIAAYGYHG 281



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 37/234 (15%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           FSLD  + + T+++D+YA+ G V SA ++F  M +++++S                    
Sbjct: 232 FSLD--VILGTAMIDMYAKCGSVESAREVFDRMKEKNVIS-------------------- 269

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                      W+ MI  Y  HG   +A+ LF  ML+  + PN VT V++L AC   G +
Sbjct: 270 -----------WSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLI 318

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           E G    + +     ++ +V+  T ++++  + G L +A RL+     +KD  +W++++ 
Sbjct: 319 EEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLG 378

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGRRFFNTM 235
              +H   + A +  N +  + L+P +     LLS   A AG   +  +F + M
Sbjct: 379 ACRIHSKMELAEKAANSL--LELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMM 430


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/437 (48%), Positives = 303/437 (69%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +L  Y K  ++ +A+ +F+ + EKDV+ W  M+ G A+ G   EAL LF++M   K+E
Sbjct: 252 NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIE 311

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +E+T V VLSAC Q GAL+ G++IH  I+    I  ++ + TAL++MY+KCGS+  A  
Sbjct: 312 LDEITLVGVLSACAQTGALDQGKYIHLLIDKFE-INCDLVLETALVDMYAKCGSIDLALQ 370

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF R+  ++V  WN++I G AMHG G+DA+ LF++M   +L P D+TFI LL AC+HAGL
Sbjct: 371 VFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGL 430

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F  MK+++ IEP++EHYGC+V+LL RA +V++A   + +M I+ +SVLW TLL
Sbjct: 431 VDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 490

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR  G+  L EKI   +I     + G YV+LSN+YA +  WD   ++R  MK KG++K
Sbjct: 491 GACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 550

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEK 403
            PGCS IEL+  +H+F+AGD  H ++++IY M+EE+   +  + G+VP T  VL DI E+
Sbjct: 551 TPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE 610

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K++SL +HSEKLA+A GLIST  G+ I+IVKNLRVC DCH+  K+ SK   R+I+ RDR
Sbjct: 611 EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDR 670

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFHHF  G+CSC D+W
Sbjct: 671 SRFHHFKEGSCSCMDFW 687



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 149/253 (58%), Gaps = 4/253 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  +  ++  Y   G    A  +FD+   +DVV WN+MI+ +   GL+ +A  L   M  
Sbjct: 146 LFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTK 205

Query: 101 -EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            + + P+EVT V+++ AC Q+G LE G+++HSY      +  N++V  A+++MY KC  +
Sbjct: 206 LDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY-SKELGLDENLRVNNAILDMYCKCDDI 264

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + A+ VF+R+ +KDV+ W SM+ G A  G+ ++AL LF +M   +++  +IT +G+LSAC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G +++G ++ + + D++ I   +     +V++ ++ G ++ A ++   M++  +   
Sbjct: 325 AQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFT 382

Query: 280 WGTLLGACRLHGN 292
           W  L+G   +HG+
Sbjct: 383 WNALIGGLAMHGH 395



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 147/328 (44%), Gaps = 40/328 (12%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           +  G++  AR LF  M+  D    N MI GYA+     EA+ L+  M+   V  +  T  
Sbjct: 56  SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            VL+AC ++GA++ GR  H  +  +     ++ V  ALI  Y  CGS   A  VFD    
Sbjct: 116 FVLAACARLGAVKLGRRFHCEVLKN-GFGSDLFVINALIQFYHNCGSFGCACDVFDESTV 174

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGR- 229
           +DVV WN MI  +   G  + A  L +EM ++  L+P ++T + L+ ACA  G +  G+ 
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234

Query: 230 --------------RFFNTMKDEYAI---------------EPKVEHYGCMVNLLSRAGQ 260
                         R  N + D Y                 E  V  +  M++ L+++G 
Sbjct: 235 LHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGY 294

Query: 261 VEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL- 316
            +EA  L   M   KIE D +    +L AC   G +  G+ I  +L+      +   VL 
Sbjct: 295 FQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYI--HLLIDKFEINCDLVLE 352

Query: 317 --LSNIYAAIGNWDGVARVRTLMKEKGV 342
             L ++YA  G+ D   +V   M+ + V
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNV 380



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV  T ++  YAK G +  A  +F  M  ++V  WN +I G A HG   +A+ LF +M  
Sbjct: 349 LVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEH 408

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           +K+ P++VT +A+L AC   G ++ G  +   ++N   I+  ++    ++++  +   + 
Sbjct: 409 DKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVD 468

Query: 161 DARLVFDRVNDK-DVVVWNSMI 181
           DA    + +  K + V+W +++
Sbjct: 469 DALAFIENMPIKANSVLWATLL 490


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/472 (45%), Positives = 312/472 (66%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++ ++LV +YA  G +  A  LF  M  ++LV+ T M+T Y+K G++  AR +F+ M 
Sbjct: 257 DPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMV 316

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +KD+VCW+ MI GYA+     EAL LF  M +  ++P++VT ++V++AC  +GAL+  +W
Sbjct: 317 KKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKW 376

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH +++ +      + +  ALI MY+KCGSL+ AR +FD++  K+V+ W  MI  +AMHG
Sbjct: 377 IHLFVDKN-GFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHG 435

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
               AL+ F++M    ++P+ ITF+G+L AC+HAGLV EGR+ F +M +E+ I PK  HY
Sbjct: 436 DAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHY 495

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RA  + EA +LV  M + P+ ++WG+L+ ACR+HG I LGE  A+ L+  + 
Sbjct: 496 GCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDP 555

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            + G +V LSNIYA    W+ V +VR LMK KG+ KE GCS  EL+N++HEFL  D  H 
Sbjct: 556 DHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHK 615

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            + EIY  L E+   LK  GY P T  +L D+ E++K+  +  HSEKLA+ +GL+    G
Sbjct: 616 HADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTG 675

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + I+I+KNLRVC DCH   KL SK   R+I++RDR RFHH+ +G CSC DYW
Sbjct: 676 SCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 163/304 (53%), Gaps = 37/304 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YA  G +A AR++FD M  +DVV W++MIDGY Q GL N+AL+LF  M    VE
Sbjct: 161 TGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVE 220

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSL---- 159
           P+E+    VLSACG+ G L  G+ IH +I EN  NI V+  + +AL+ MY+ CGS+    
Sbjct: 221 PDEMMLSTVLSACGRAGNLSYGKMIHDFIMEN--NIVVDPHLQSALVTMYASCGSMDLAL 278

Query: 160 ---------------------------KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                                      ++AR VF+++  KD+V W++MI GYA     ++
Sbjct: 279 NLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQE 338

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           AL LFNEM  + +KP  +T + +++ACAH G +++  ++ +   D+      +     ++
Sbjct: 339 ALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALI 397

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            + ++ G +E A + + D     + + W  ++ A  +HG+     +    +  +N+  +G
Sbjct: 398 EMYAKCGSLERARR-IFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNG 456

Query: 313 -TYV 315
            T+V
Sbjct: 457 ITFV 460



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 102/196 (52%), Gaps = 6/196 (3%)

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           + L+++ RM  + +  +  +   +L A  ++ +L  G  IH  +        +  V T L
Sbjct: 105 KTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHG-LAAKLGFDSDPFVQTGL 163

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           + MY+ CG + +ARL+FD++  +DVV W+ MI GY   G   DAL LF EM    ++P +
Sbjct: 164 VRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDE 223

Query: 210 ITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +    +LSAC  AG ++ G+   +  M++   ++P ++    +V + +  G ++ A  L 
Sbjct: 224 MMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ--SALVTMYASCGSMDLALNLF 281

Query: 269 MDMKIEPDSVLWGTLL 284
              K+ P +++  T +
Sbjct: 282 --EKMTPKNLVASTAM 295


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/437 (48%), Positives = 288/437 (65%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y + G +  A+ +F+  + +DV+ WN MI G+AQHG    A  LF+ M  E++E
Sbjct: 470 NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE 529

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ +T  +VLS C    ALE G+ IH  I  S  ++++V +G ALINMY +CGSL+DAR 
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAG 223
           VF  +  +DV+ W +MI G A  G    A++LF +M     +P D  TF  +LSAC HAG
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAG 648

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG + F++M+ EY + P +EHYGC+V LL RA + +EA  L+  M   PD+ +W TL
Sbjct: 649 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 708

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+HGNIAL E  A   +  N  N   Y+LLSN+YAA G WD VA++R +M+ +G++
Sbjct: 709 LGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIR 768

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPG S IE+ N +HEF+A D  HP++ EIY  L+ ++  ++  GY P TQ VLHD+G+ 
Sbjct: 769 KEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKA 828

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            ++ SL  HSE+LA+A+GLI T PGT I+I KNLR+C DCH   K ISK  GR+I+ RD 
Sbjct: 829 HQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDS 888

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFH F NG CSC DYW
Sbjct: 889 NRFHSFKNGKCSCEDYW 905



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +++ YA+ G++  AR LF  M ++D++ WN +I GYA+     EA+ L+++M +E V+
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  VT + +LSAC    A   G+ IH  I  S  IK N  +  AL+NMY +CGSL +A+ 
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+    +DV+ WNSMI G+A HG  + A +LF EM    L+P +ITF  +LS C +   
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G++    +  E  ++  V     ++N+  R G +++A  +   ++   D + W  ++
Sbjct: 548 LELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMI 605

Query: 285 GACRLHG 291
           G C   G
Sbjct: 606 GGCADQG 612



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 34/288 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++T   + G+V +A+  F  + ++DVV +N +I   AQHG   EA   + RM ++ V 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T +++L+AC    ALE+G+ IHS+I    +   +VQ+G ALI+MY++CG L  AR 
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIGNALISMYARCGDLPKARE 386

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-- 222
           +F  +  +D++ WN++I GYA      +A++L+ +M    +KP  +TF+ LLSACA++  
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 223 ------------------------GLVNEGRRFFNTMKDEYAIE----PKVEHYGCMVNL 254
                                    L+N  RR  + M+ +   E      V  +  M+  
Sbjct: 447 YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
            ++ G  E AYKL  +M+   +EPD++ + ++L  C+    + LG++I
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 19/339 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   V  A  +F +M  +DV+ WN +I  YAQ G   +A  LF  M      PN
Sbjct: 68  LINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           ++T +++L+AC     LE+G+ IHS I  +   + + +V  +L++MY KCG L  AR VF
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKA-GYQRDPRVQNSLLSMYGKCGDLPRARQVF 186

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             ++ +DVV +N+M+  YA   + K+ L LF +M    + P  +T+I LL A     +++
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE---EAYKLVMDMKIEPDSVLWGTL 283
           EG+R      +E  +   +     +V +  R G V+   +A+K + D     D V++  L
Sbjct: 247 EGKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR----DVVVYNAL 301

Query: 284 LGACRLHG-NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           + A   HG N+   E+           N  TY+ + N  +     +    + + + E G 
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG- 360

Query: 343 QKEPGCSSIELSNKVHEFLA--GDLRHPKSKEIYMMLEE 379
                 S +++ N +    A  GDL  PK++E++  + +
Sbjct: 361 ----HSSDVQIGNALISMYARCGDL--PKARELFYTMPK 393



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           QR      ++L+ Y K G++  AR +F  +  +DVV +N M+  YAQ     E L LF +
Sbjct: 160 QRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQ 219

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M +E + P++VT + +L A      L+ G+ IH  +     +  +++VGTAL+ M  +CG
Sbjct: 220 MSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK-LTVEEGLNSDIRVGTALVTMCVRCG 278

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  A+  F  + D+DVVV+N++I   A HG   +A + +  M    +  +  T++ +L+
Sbjct: 279 DVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+ +  +  G +  ++   E      V+    ++++ +R G + +A +L   M  + D 
Sbjct: 339 ACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDL 396

Query: 278 VLWGTLLGA 286
           + W  ++  
Sbjct: 397 ISWNAIIAG 405



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            E +  T VA+L  C +   L   + IH+ +  +  +  ++ +   LINMY KC S+ DA
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEA-GVGPDIFLSNLLINMYVKCRSVLDA 81

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF  +  +DV+ WNS+I  YA  GF K A QLF EM      P+ IT+I +L+AC   
Sbjct: 82  HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSP 141

Query: 223 GLVNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP-DSVLW 280
             +  G++  +  +K  Y  +P+V++   ++++  + G +  A ++     I P D V +
Sbjct: 142 AELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAG--ISPRDVVSY 197

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
            T+LG       +     +   + S+ ++ +  TY+ L + +      D   R+  L  E
Sbjct: 198 NTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE 257

Query: 340 KGVQKE 345
           +G+  +
Sbjct: 258 EGLNSD 263



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 31/184 (16%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  D+ +  +L+++Y R G +  A  +F ++  R ++S T M+   A QGE   A  LF 
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELF- 621

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                    W +  +G+                      P+  T  ++LSAC   G +  
Sbjct: 622 ---------WQMQNEGFR--------------------PPDGSTFTSILSACNHAGLVLE 652

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
           G  I S +E+   +   ++    L+ +  +    ++A  + +++    D  VW +++   
Sbjct: 653 GYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGAC 712

Query: 185 AMHG 188
            +HG
Sbjct: 713 RIHG 716


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/481 (44%), Positives = 306/481 (63%), Gaps = 2/481 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAA 59
            VK     DL+V  +LV  Y   GDV +  ++F  +P+ R +++   +L  Y + G +  
Sbjct: 172 AVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTV 231

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD+M  +D + W+ ++ GY +      AL +FR M+ + V PN+   V  LSA  +
Sbjct: 232 AREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAAR 291

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+++H+ ++ S  + V + VG AL++MY+KCG +  AR VFD +  +DV  WN+
Sbjct: 292 LGLLEHGKFVHNVVQRS-GMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNA 350

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G+DA++LF       L P+++TF+G+L+ C+ +GLV EGRR+F  + ++Y
Sbjct: 351 MICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKY 410

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IEP++EHYGCMV+LL RAG V EA +L+  M I PD VLWGT+L +C+ HG + LG  +
Sbjct: 411 RIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSV 470

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  +  +SG YVLLS IYA    WD V  VR LM  +G  K  G S +E   KVH+
Sbjct: 471 GNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHK 530

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD  H  S +IY  L+ IN  L   GYVP    VLHDIGE++K ++++VHSE+LA+A
Sbjct: 531 FLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIA 590

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +G I  + G+ I+IVKNLRVC DCH   K+++    R+I++RD +RFHH   G CSC DY
Sbjct: 591 YGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDY 650

Query: 480 W 480
           W
Sbjct: 651 W 651


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 293/436 (67%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  YAK G V +AR +FD ++E+DVVCWN M+  Y+Q+G  +E+L L R M    ++
Sbjct: 141 AALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLK 200

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P E T V  ++A    G L  G+ +H Y       + N +V TAL++MY+K GS+  AR 
Sbjct: 201 PTEGTFVISIAASADNGLLPQGKELHGY-SWRHGFESNDKVKTALMDMYAKSGSVNVARS 259

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + +K VV WN+MI GYAMHG   +AL LF EM + ++ P  ITF+G+L+AC+H GL
Sbjct: 260 LFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGL 318

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +NEG+  F +M  ++ I P V+HY CM++LL   G++EEAYKL+M+M++EPD+ +WG LL
Sbjct: 319 LNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALL 378

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +C++HGN+ +GE   E L+     + G YV+LSN+YA  G WDGVAR+R LM  KG++K
Sbjct: 379 HSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKK 438

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
              CS IE+ NKVH FL+ D  HPKS+ IY  L+     +K  GY PQ   V HD+ + +
Sbjct: 439 SIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDE 498

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K + +  HSE+LA+AFGLIST  GT + I+KNLR+C DCH   K ISK T R+I +RD N
Sbjct: 499 KVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVN 558

Query: 465 RFHHFVNGTCSCGDYW 480
           R+HHF +G CSCGD+W
Sbjct: 559 RYHHFKDGVCSCGDFW 574



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 34/281 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y     +  A +LFD + ++++  WNVMI GYA +G    A+ L+ +M    + 
Sbjct: 40  TKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLV 99

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T   VL AC  + A+E G+ IH  +  S  ++ +V VG ALI+MY+KCG ++ AR 
Sbjct: 100 PDKFTFPFVLKACSALSAMEEGKKIHKDVIRS-GLESDVFVGAALIDMYAKCGCVESARQ 158

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD+++++DVV WNSM+  Y+ +G   ++L L   M    LKP++ TF+  ++A A  GL
Sbjct: 159 VFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGL 218

Query: 225 VNEGRRFF---------------NTMKDEYAI---------------EPKVEHYGCMVNL 254
           + +G+                    + D YA                E +V  +  M+  
Sbjct: 219 LPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG 278

Query: 255 LSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNI 293
            +  G   EA  L  +M  K+ PD + +  +L AC  HG +
Sbjct: 279 YAMHGHANEALDLFKEMKGKVLPDHITFVGVLAACS-HGGL 318



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 3/181 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           ++L +C    A+E G+ +H+ I     I  N  + T L+N+Y  C SL +A L+FDR++ 
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARI-CQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISK 64

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           +++ +WN MI GYA +G  + A+ L+ +M    L P   TF  +L AC+    + EG++ 
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +     +E  V     ++++ ++ G VE A + V D   E D V W ++L     +G
Sbjct: 125 HKDVIRS-GLESDVFVGAALIDMYAKCGCVESA-RQVFDKIDERDVVCWNSMLATYSQNG 182

Query: 292 N 292
            
Sbjct: 183 Q 183



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 94/202 (46%), Gaps = 41/202 (20%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V T+L+D+YA+ G V  A  LF  + ++ +VS   M+T YA                   
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYA------------------- 280

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG ANEAL LF+ M   KV P+ +T V VL+AC   G L  G+    
Sbjct: 281 ------------MHGHANEALDLFKEMKG-KVLPDHITFVGVLAACSHGGLLNEGKMHFR 327

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG-- 188
            + +  NI   VQ  T +I++   CG L++A +L+ +   + D  VW +++    +HG  
Sbjct: 328 SMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNV 387

Query: 189 -FGKDALQLFNEMCRIRLKPSD 209
             G+ AL+       + L+P D
Sbjct: 388 EMGELALEKL-----VELEPDD 404


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/484 (44%), Positives = 305/484 (63%), Gaps = 5/484 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L KD  V ++++D+Y + G V     LF              +T  ++ G V  A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 61  RVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
             +F+  +E+    +VV W  +I G AQ+G   EAL LFR M    V+PN VT  ++L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           CG I AL  GR  H +      +  NV VG+ALI+MY+KCG +  +++VF+ +  K++V 
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WNS++ G++MHG  K+ + +F  + R RLKP  I+F  LLSAC   GL +EG ++F  M 
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +EY I+P++EHY CMVNLL RAG+++EAY L+ +M  EPDS +WG LL +CRL  N+ L 
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLA 576

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E  AE L      N GTYVLLSNIYAA G W  V  +R  M+  G++K PGCS I++ N+
Sbjct: 577 EIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNR 636

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           V+  LAGD  HP+  +I   ++EI+  ++  G+ P     LHD+ E++++  L  HSEKL
Sbjct: 637 VYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKL 696

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           AV FGL++T  GT ++++KNLR+C DCHAV K IS + GR+I +RD NRFHHF +G CSC
Sbjct: 697 AVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSC 756

Query: 477 GDYW 480
           GD+W
Sbjct: 757 GDFW 760



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 44/359 (12%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD D +V  S+  +Y R G +  A K+F  M  + +V+ + +L  YA++G +     +  
Sbjct: 147 LDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS 206

Query: 66  DME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +ME    E ++V WN ++ G+ + G   EA+V+F+++      P++VT  +VL + G   
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSE 266

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG------------------------ 157
            L  GR IH Y+     +K    + +A+I+MY K G                        
Sbjct: 267 MLNMGRLIHGYVIKQGLLKDKCVI-SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325

Query: 158 -----------SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
                      +L+   L  ++  + +VV W S+I G A +G   +AL+LF EM    +K
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P+ +T   +L AC +   +  GR         + ++  V     ++++ ++ G++  + +
Sbjct: 386 PNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLS-Q 443

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
           +V +M    + V W +L+    +HG       I E L+   L     ++  +++ +A G
Sbjct: 444 IVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD--FISFTSLLSACG 500



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/358 (19%), Positives = 145/358 (40%), Gaps = 73/358 (20%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+       A ++   + +  +  ++ +I    +  L  +++ +F RM +  + P+
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                 +   C ++ A + G+ IH  +     + ++  V  ++ +MY +CG + DAR VF
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHC-VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVF 174

Query: 167 DRVNDKDVVV-----------------------------------WNSMIVGYAMHGFGK 191
           DR++DKDVV                                    WN ++ G+   G+ K
Sbjct: 175 DRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHK 234

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------NTMKDEYAIEPKV 245
           +A+ +F ++  +   P  +T   +L +   + ++N GR           +KD+  I   +
Sbjct: 235 EAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294

Query: 246 EHYG------------------------CMVNLLSRAGQVEEA---YKLVMDMKIEPDSV 278
           + YG                          +  LSR G V++A   ++L  +  +E + V
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVV 354

Query: 279 LWGTLLGACRLHG-NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            W +++  C  +G +I   E   E  ++    N   +V + ++  A GN   +   R+
Sbjct: 355 SWTSIIAGCAQNGKDIEALELFREMQVAGVKPN---HVTIPSMLPACGNIAALGHGRS 409


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/477 (42%), Positives = 309/477 (64%), Gaps = 1/477 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  +  L V+ +LV LY++GG ++ A+++F TM  + +VS  T+L+ Y   G +  A  +
Sbjct: 333 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEV 392

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F  M  K+ + W VM+ GY   GL+ +AL LF +M AE V+P + T    ++ACG++GAL
Sbjct: 393 FKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGAL 452

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + GR +H+++      + +   G AL+ MY+KCG++ DARLVF  + + D V WN+MI  
Sbjct: 453 KHGRQLHAHLVQC-GFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 511

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
              HG G++AL+LF++M    + P  I+F+ +L+AC HAGLV+EG  +F +MK ++ I P
Sbjct: 512 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISP 571

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
             +HY  +++LL R+G++ EA  L+  M  EP   +W  +L  CR +G++  G   A+ L
Sbjct: 572 GEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQL 631

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
                 + GTY+LLSN Y+A G W   ARVR LM+++GV+KEPGCS IE+ +K+H FL G
Sbjct: 632 FRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVG 691

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D +HP+++E+Y  LE I   ++  GYVP T+ VLHD+   +K+  L  HSEKLAV FGL+
Sbjct: 692 DTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLL 751

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              PG ++ ++KNLR+C DCH     +SK  GR+I++RD  RFHHF +G CSCG+YW
Sbjct: 752 KLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 160/320 (50%), Gaps = 39/320 (12%)

Query: 10  LYVSTSLVDLYARGGDVLS---AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           L VS +L+ LY +     +   A K+   MP +  ++ TTM+  Y ++G+V AAR +F++
Sbjct: 200 LSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEE 259

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ++ K  V WN MI GY Q G+  +A  LFRRM++EKV  +E T  +VLSAC   G    G
Sbjct: 260 VDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHG 319

Query: 127 RWIHSYI---ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---- 179
           + +H  I   + +   +  + V  AL+ +YSK G +  A+ +FD +N KDVV WN+    
Sbjct: 320 KSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSG 379

Query: 180 ---------------------------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
                                      M+ GY   G  +DAL+LFN+M    +KP D T+
Sbjct: 380 YIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTY 439

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            G ++AC   G +  GR+    +  +   E        ++ + ++ G V +A +LV  + 
Sbjct: 440 AGAIAACGELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAVNDA-RLVFLVM 497

Query: 273 IEPDSVLWGTLLGACRLHGN 292
              DSV W  ++ A   HG+
Sbjct: 498 PNLDSVSWNAMISALGQHGH 517



 Score = 41.6 bits (96), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 146 GTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMC-R 202
            T+L+  ++  G L+DA   FD V    +D V+ N+M+  +A       A+ +F+ +   
Sbjct: 97  ATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 156

Query: 203 IRLKPSDITFIGLLSA 218
             L+P D +F  L+SA
Sbjct: 157 GSLRPDDYSFTALISA 172


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/472 (45%), Positives = 321/472 (68%), Gaps = 1/472 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           T++   D D +V T L+ LYA  G + S  K+F ++     V  T M+T  A+ G+VA A
Sbjct: 142 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFA 201

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R LF+ M EKD + WN MI GYAQ G + EAL LF  M  E V+ N V+ ++VLSAC Q+
Sbjct: 202 RKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQL 261

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ GRW HSYIE ++ IK+ V++GT L+++Y+KCG +  A  VF  + +K+V  W+S 
Sbjct: 262 GALDQGRWAHSYIERNK-IKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSA 320

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + G AM+GFG+  L+LF+ M +  + P+ +TF+ +L  C+  G V+EG++ F++M++E+ 
Sbjct: 321 LNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFG 380

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP+++HYGC+V+L +RAG++E+A  ++  M ++  + +W +LL A R++ N+ LG   +
Sbjct: 381 IEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLAS 440

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + ++    +N G YVLLSNIYA   +WD V+ VR  MK KGV+K+PGCS +E++ +VHEF
Sbjct: 441 KKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEF 500

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             GD  HPK  EI  + ++I+  L+  GY   T  V+ DI E++K+++L +HSEK A+AF
Sbjct: 501 FVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAF 560

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           G++S +    I+IVKNLRVC DCH V  +ISK   R+I++RDRNRFHHF +G
Sbjct: 561 GIMSLKADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/438 (42%), Positives = 275/438 (62%), Gaps = 2/438 (0%)

Query: 44   LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +  ++  Y K G++ ++  LF+D+  K++V WN MI  + Q+GLA E L  F       +
Sbjct: 675  VNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGL 734

Query: 104  EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            +P++ T +AVL  C  IG +   + IH  I        N  + TAL+++Y+K G L+D+ 
Sbjct: 735  KPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFC-GFNANTCITTALLDLYAKLGRLEDSS 793

Query: 164  LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             VF  +   D + W +M+  YA HG+G+DA++ F  M    L P  +TF  LL+AC+H+G
Sbjct: 794  TVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSG 853

Query: 224  LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            LV EGR +F TM   Y IEP+++HY CMV+L+ R+G +++AY L+ +M +EP S +WG L
Sbjct: 854  LVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGAL 913

Query: 284  LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
            LGACR++ +  LG K A+ L      +   Y++LSNIY+A G W   +R+R LMK+KG+ 
Sbjct: 914  LGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLV 973

Query: 344  KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGE 402
            +  G S IE  NK+H+F+ GD  HP+S++I   L+EI   +K+E G+  +T+ VLHD+ E
Sbjct: 974  RASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDE 1033

Query: 403  KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
              K+  +  HSEK+A+AFGL+   P   I I KNLR+C DCH   K IS    R+I++RD
Sbjct: 1034 DVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRD 1093

Query: 463  RNRFHHFVNGTCSCGDYW 480
              RFHHF+ G+CSC DYW
Sbjct: 1094 SKRFHHFLEGSCSCRDYW 1111



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 20/267 (7%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L A +P R + +L     C+  Q  +  +++   ++  +D   ++   DG    G   E 
Sbjct: 565 LKADVPIRIVKNLRVCGDCH--QVSMMISKIFNREIIVRDRNRFHHFKDGRGYLGKCFEV 622

Query: 92  LVLFRRMLAEKV--EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           L    RM+  +V   PNEVT ++++SAC   G  E G  IH  +  S  +   V+V  AL
Sbjct: 623 L---SRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKS-GVLEEVKVVNAL 678

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +N+Y K G L  +  +F+ ++ K++V WN+MIV +  +G  ++ L  FN    + LKP  
Sbjct: 679 MNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQ 738

Query: 210 ITFIGLLSACAHAGLVN-----EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
            TF+ +L  C   G+V       G   F        I         +++L ++ G++E++
Sbjct: 739 ATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITT------ALLDLYAKLGRLEDS 792

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHG 291
             + +++   PDS+ W  +L A   HG
Sbjct: 793 STVFLEI-TSPDSMAWTAMLAAYATHG 818



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 150/323 (46%), Gaps = 42/323 (13%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSAC 117
           A  + D  ++  +   N MI  + +  +  ++   + R+L+    ++P+  T   ++ AC
Sbjct: 67  ANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQAC 126

Query: 118 GQIGALESGRWIHSY-IENSRNIKVNVQVG-----------------------------T 147
             +G  E+G  +H   I    +   +VQ G                             T
Sbjct: 127 TGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRT 186

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           A++   ++CG +  AR +F+ + +KD + WN+MI GYA  G  ++AL LF+ M    +K 
Sbjct: 187 AMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKV 246

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           + ++ I +LSAC   G +++G R+ ++  +   I+  V     +V+L ++ G +++A ++
Sbjct: 247 NGVSMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEV 305

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY--LISQN--LANSGTYVLLSNIYAA 323
              M+ E +   W + L    ++G    GEK  +   L+ Q+    N+ T+V +    + 
Sbjct: 306 FWGME-EKNVYTWSSALNGLAMNG---FGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSV 361

Query: 324 IGNWD-GVARVRTLMKEKGVQKE 345
           +G  D G     ++  E G++ +
Sbjct: 362 VGFVDEGQKHFDSMRNEFGIEPQ 384


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 310/479 (64%), Gaps = 2/479 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F    DLYV  +++ +Y + G +  A K+F  MP R +V+ T ++  YA+ G++ +A  L
Sbjct: 138 FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACEL 197

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F  +  KD+V W  M+ GY+Q+ +  +AL  FR+M    V  +E+T V  +SAC Q+G  
Sbjct: 198 FVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVS 257

Query: 124 ESGRWIHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
               WI    E+SR     NV VG+ALI+MYSKCG++++A  VF  + + +V  ++SMIV
Sbjct: 258 GYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIV 317

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G+A+HG  + A++LF EM    +KP+ +TF+GL +AC+HAG+V +G++ F  MK+ Y + 
Sbjct: 318 GFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVS 377

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P  +HY CM +LL RAG +E+A +LV  M +EP+  +WG LLGA  +HGN  + E  +  
Sbjct: 378 PTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRS 437

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK-VHEFL 361
           L      N G Y+LLS  YA    WD V+RVR LM+EK ++K PGCS +E  N  +HEF 
Sbjct: 438 LFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFF 497

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD++HP+  EI   L+++   LK  GY P+   V +DI ++ K+  L  HSEKLA+A+G
Sbjct: 498 AGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYG 557

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ST  G++IKI+KNLR+C DCH V    SK TGRKI++RD  RFHHF+NG CSC ++W
Sbjct: 558 LLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 53/271 (19%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            +LF  +   +   ++ +I  YA++G  + ++ L+  ML   V P   T  A+ S     
Sbjct: 66  HLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKN- 124

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV---- 176
            +L S   +H+++    N   ++ VG  +I+MY K G L  AR VFD +  +DVV     
Sbjct: 125 PSLGSQLHLHAFLFGFVN---DLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTEL 181

Query: 177 ---------------------------WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
                                      W SM+ GY+ +   K ALQ F +M    +   +
Sbjct: 182 IVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDE 241

Query: 210 ITFIGLLSACAHAGL---------VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
           IT +G +SACA  G+         + E  RF             V     ++++ S+ G 
Sbjct: 242 ITLVGAISACAQLGVSGYADWIREIAESSRF--------GSGSNVFVGSALIDMYSKCGN 293

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           VEEAY +   MK E +   + +++    +HG
Sbjct: 294 VEEAYNVFKGMK-EMNVFSYSSMIVGFAVHG 323



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +F    +++V ++L+D+Y++ G+V  A  +F  M + ++ S ++M+  +A  G       
Sbjct: 271 RFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGR------ 324

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                    A  A+ LF  ML   ++PN VT V + +AC   G 
Sbjct: 325 -------------------------ARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGM 359

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           +E G+ +   ++    +         + ++  + G L+ A +LV     + +  VW +++
Sbjct: 360 VEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALL 419

Query: 182 VGYAMHG 188
               +HG
Sbjct: 420 GASHIHG 426


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/437 (46%), Positives = 298/437 (68%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++++ Y+K   V  A  +F+++  +  V WN MI GYAQ+G  +EAL  F  M +  +
Sbjct: 387 MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM 446

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+V+ A  ++      +WIH  I  S  +  N+ V TAL++MYSKCG++  AR
Sbjct: 447 KPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS-CLDKNIFVTTALVDMYSKCGAIHMAR 505

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD ++D+ V+ WN+MI GY  HG G+ AL LF++M +  ++P+DIT++ ++SAC+H+G
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EG R F +MK +Y +EP ++HYG MV+LL RAG+++EA+  + +M I P   ++G +
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAM 625

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H NI +GEK A+ L   N    G +VLL+NIYA+   W  VA VR  M++KG++
Sbjct: 626 LGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS +EL N+VH F +G   HP+SK IY  LEE+   +KA GYVP T ++L D+ + 
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDD 744

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            ++  L  HSEKLA+AFGL++T PGT+I + KNLRVC DCH   K IS  TGR+I++RD 
Sbjct: 745 VQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDM 804

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF NG CSCGDYW
Sbjct: 805 QRFHHFKNGICSCGDYW 821



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 143/252 (56%), Gaps = 4/252 (1%)

Query: 41  LVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           LV+++T L   Y+K G V  AR++FD M++K VV WN M+DGY Q+G   +A+ +F +ML
Sbjct: 282 LVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKML 341

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E ++P  VT +  L AC  +G LE G+++H +++   N+  ++ V  +LI+MYSKC  +
Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQ-LNLGSDISVMNSLISMYSKCKRV 400

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             A  +F+ +N +  V WN+MI+GYA +G   +AL  F+EM  + +KP   T + ++ A 
Sbjct: 401 DIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPAL 460

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A   +     ++ + +     ++  +     +V++ S+ G +  A KL  DM  +   + 
Sbjct: 461 AELSVTRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKL-FDMISDRHVIT 518

Query: 280 WGTLLGACRLHG 291
           W  ++     HG
Sbjct: 519 WNAMIDGYGTHG 530



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 2/225 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++ ++T ++  YAK  ++  A  +FD M E+D+V WN +I G++Q+G A +AL L  RM 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E   P+ +T V VL A   +G L  G+ IH Y   +   K+ V + TAL +MYSKCGS+
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL-VNISTALADMYSKCGSV 299

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + ARL+FD ++ K VV WNSM+ GY  +G  + A+ +F +M    + P+ +T +  L AC
Sbjct: 300 ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           A  G +  G +F +   D+  +   +     ++++ S+  +V+ A
Sbjct: 360 ADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ ++K G +  A  +F+ +++K    ++ M+ GYA++     AL    RM  + V+
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 105 PNEVTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P       +L  CG    L+ G+ IH   I NS     NV   T ++NMY+KC  + DA 
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNS--FAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FDR+ ++D+V WN++I G++ +GF K AL+L   M     +P  IT + +L A A  G
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 224 LVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           L+  G+         YAI       V     + ++ S+ G VE A +L+ D   +   V 
Sbjct: 263 LLMVGKSIHG-----YAIRAGFAKLVNISTALADMYSKCGSVETA-RLIFDGMDQKTVVS 316

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           W +++     +G       + E ++ + +  +G  ++
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  LDK+++V+T+LVD+Y+                               K G +  AR
Sbjct: 477 IRSCLDKNIFVTTALVDMYS-------------------------------KCGAIHMAR 505

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD + ++ V+ WN MIDGY  HGL   AL LF +M    VEPN++T ++V+SAC   G
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            ++ G      ++    ++ ++    A++++  + G +K+A
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEA 606


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/476 (44%), Positives = 296/476 (62%), Gaps = 1/476 (0%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           SLD  L V+ +L  LY + G V  A ++F  MP + LVS   +L+ Y   G +  A+  F
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFF 384

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++M E++++ W VMI G AQ+G   E+L LF RM +E  EP +      + AC  + AL 
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR +H+ +        ++  G ALI MY+KCG ++ A  +F  +   D V WN+MI   
Sbjct: 445 HGRQLHAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAAL 503

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             HG G  AL+LF  M +  + P  ITF+ +LS C+HAGLV EG R+F +M   Y I P 
Sbjct: 504 GQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPG 563

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY  M++LL RAG+  EA  ++  M +EP   +W  LL  CR+HGN+ LG + AE L 
Sbjct: 564 EDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLF 623

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                + GTYVLLSN+YA +G WD VA+VR LM++KGV+KEPGCS IE+ NKVH FL  D
Sbjct: 624 ELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDD 683

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
           + HP+ + +Y  LEE+   ++  GY+P T+ VLHD+  +QK+  L  HSEKLAV FGL+ 
Sbjct: 684 IVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLK 743

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              G ++++ KNLR+C DCH  FK +SK   R+I++RD  RFHHF NG CSCG+YW
Sbjct: 744 LPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 36/315 (11%)

Query: 28  SAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
           +A KLF  M +R  +S TTM+  Y + GE+ AAR   D M EK VV WN MI GY  HG 
Sbjct: 212 AARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271

Query: 88  ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI---ENSRNIKVNVQ 144
             EAL +FR+M    ++ +E T  +VLSAC   G    G+ +H+YI   E   ++  ++ 
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLS 331

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY-------------------- 184
           V  AL  +Y KCG + +AR VF+++  KD+V WN+++ GY                    
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERN 391

Query: 185 -----------AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
                      A +GFG+++L+LFN M     +P D  F G + ACA    +  GR+   
Sbjct: 392 LLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHA 451

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            +      +  +     ++ + ++ G VE A+ L + M    DSV W  ++ A   HG+ 
Sbjct: 452 QLV-RLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY-LDSVSWNAMIAALGQHGHG 509

Query: 294 ALGEKIAEYLISQNL 308
           A   ++ E ++ +++
Sbjct: 510 AQALELFELMLKEDI 524



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 172/379 (45%), Gaps = 51/379 (13%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF--DDME 68
           Y+   L+D+Y +  D++SA  LF  + Q  +V+ TT++  ++  G    AR +F    + 
Sbjct: 51  YILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLG 110

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA----------CG 118
            +D VC+N MI GY+ +     A+ LFR +L     P+  T  +VL A          C 
Sbjct: 111 IRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQ 170

Query: 119 QI--GALESGRWIHSYIENSRNIKVNVQVG-----------------------------T 147
           QI    ++SG    + + N+  + V V+                               T
Sbjct: 171 QIHCAVVKSGSGFVTSVLNAL-LSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWT 229

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
            +I  Y + G L  AR   D + +K VV WN+MI GY  HGF  +AL++F +M  + ++ 
Sbjct: 230 TMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW 289

Query: 208 SDITFIGLLSACAHAGLVNEGRR---FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
            + T+  +LSACA+AG    G++   +    +   +++  +     +  L  + G+V+EA
Sbjct: 290 DEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEA 349

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
            ++   M ++ D V W  +L      G I   +   E +  +NL    T+ ++ +  A  
Sbjct: 350 RQVFNQMPVK-DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLL---TWTVMISGLAQN 405

Query: 325 GNWDGVARVRTLMKEKGVQ 343
           G  +   ++   MK +G +
Sbjct: 406 GFGEESLKLFNRMKSEGFE 424



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 33/238 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D  L    +L+ +YA+ G V +A  LF TMP    VS   M+    + G      
Sbjct: 454 VRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHG------ 507

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   +AL LF  ML E + P+ +T + VLS C   G
Sbjct: 508 -----------------------HG--AQALELFELMLKEDILPDRITFLTVLSTCSHAG 542

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +E G      +     I         +I++  + G   +A+ + + +  +    +W ++
Sbjct: 543 LVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEAL 602

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           + G  +HG     +Q    +  + +   D T++ L +  A  G  ++  +    M+D+
Sbjct: 603 LAGCRIHGNMDLGIQAAERLFEL-MPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDK 659


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/480 (45%), Positives = 313/480 (65%), Gaps = 8/480 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVL 63
            D +    L+   AR   +   E L A   +  LVSL     +++  Y   G   +A  +
Sbjct: 120 PDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRV 179

Query: 64  FDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           FD++   E+++V WN +++G+A +G  NE L +FR ML  +  P+  T V+VL+AC +IG
Sbjct: 180 FDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIG 239

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            L  GR +H ++     +  N   G ALI++Y+KCG + DAR +F  +   + VV W S+
Sbjct: 240 VLALGRRVHVFVAKV-GLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSL 298

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           IVG A++GFG DALQLF+ M R +L P++IT +G+L AC+H GLV++G R+F+ MK EY 
Sbjct: 299 IVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYG 358

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P++EH GCMV+LL RAG+VEEA+  +  M +EP++V+W TLLGAC +H  + +GE   
Sbjct: 359 ITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAW 418

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             L+  +  +SG YVLLSN+YA +G W  V  +R  M   GV+K PG S +EL N V+EF
Sbjct: 419 ARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEF 478

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP++ +IY ML +I   L+ +GY+P T  VL DI +++K+++L  HSE+LA+AF
Sbjct: 479 VMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAF 538

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ + PGT I+IVKNLRVC DCH   KLISK   R+I++RDR+RFHHF  G CSC DYW
Sbjct: 539 ALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           A  VL   +   D    N ++  +A       AL L RR LA    P+  T   +L AC 
Sbjct: 77  AVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACA 133

Query: 119 QIGALESGRWIHSYIENSRNIKVN-VQVGTALINMYSKCGSLKDARLVFDRV--NDKDVV 175
           ++ AL  G  +H+  E  +N  V+ V V  +L+++Y  CG  + A  VFD +   ++++V
Sbjct: 134 RLLALRYGEGLHA--EACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLV 191

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            WNS++ G+A +G   + L +F EM  +   P   T + +L+ACA  G++  GRR  +  
Sbjct: 192 SWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRR-VHVF 250

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             +  +         +++L ++ G V++A K+  +M +    V W +L+
Sbjct: 251 VAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLI 299



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  + +   +L+DLYA+ G V  A K+F                     GE+   R 
Sbjct: 253 KVGLVGNAHAGNALIDLYAKCGGVDDARKMF---------------------GEMGVGRT 291

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                    VV W  +I G A +G   +AL LF  M  EK+ P E+T V VL AC   G 
Sbjct: 292 ---------VVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGL 342

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMI 181
           ++ G      ++    I   ++    ++++  + G +++A      +  + + VVW +++
Sbjct: 343 VDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLL 402

Query: 182 VGYAMH 187
              AMH
Sbjct: 403 GACAMH 408


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/436 (47%), Positives = 299/436 (68%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +T++  YAK G +  A+ LFD M +KD+V   VMI GYA+ G  NE+ VLF +M  +   
Sbjct: 140 STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFV 199

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++V  V +++AC ++GA+   R +H Y+  +R   ++V++GTA+I+MY+KCGS+  +R 
Sbjct: 200 PDKVAMVTIVNACAKLGAMNKARLVHDYV-CARRYSLDVELGTAMIDMYAKCGSIDSSRE 258

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FDR+  K+V+ W++MI  Y  HG G++AL+LF+ M    + P+ ITFI LL AC+HAGL
Sbjct: 259 IFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGL 318

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V++G + F+ M   Y + P V+HY CMV+LL RAG++++A +L+ +M++E D  +W   L
Sbjct: 319 VDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFL 378

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H  + L EK A+ L+S    N G Y+LLSNIYA  G W  VA++R LM ++ ++K
Sbjct: 379 GACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKK 438

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG + IE+ N ++ F AGD  H +S EIY ML+ ++  L++ GYVP T  VLHD+ E+ 
Sbjct: 439 IPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEV 498

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSEKLA+AFGLI+T  GT I+I KNLRVC DCH+  KL+S  T R I++RD N
Sbjct: 499 KLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDAN 558

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSCGDYW
Sbjct: 559 RFHHFKEGICSCGDYW 574



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 150/292 (51%), Gaps = 14/292 (4%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
           +D D ++ST       +  ++   +++ A +        L+    +L   AK  ++  A 
Sbjct: 1   MDPDFFISTLF-----KCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAH 55

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +LF+ MEE+D V W+VMI G+ ++G        FR ++    +P+  +   V+ AC    
Sbjct: 56  LLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTM 115

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  GR IHS +  +  + ++  V + L++MY+KCG + +A+ +FDR+  KD+V    MI
Sbjct: 116 GLIMGRLIHSTVLKN-GLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMI 174

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYA 240
            GYA  G   ++  LF++M R    P  +  + +++ACA  G +N+ R   + +    Y+
Sbjct: 175 AGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYS 234

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           ++  VE    M+++ ++ G ++ + + + D   + + + W  ++GA   HG 
Sbjct: 235 LD--VELGTAMIDMYAKCGSIDSS-REIFDRMEQKNVISWSAMIGAYGYHGQ 283


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/482 (45%), Positives = 317/482 (65%), Gaps = 4/482 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF    D Y   +L+ +Y   G +  A ++F TM   ++VS T++++ Y++ G V  A 
Sbjct: 127 LKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAF 186

Query: 62  VLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQ 119
            +F+ M  +K+ V WN MI  + +     EA  LFRRM  EK +E +   A  +LSAC  
Sbjct: 187 RVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTG 246

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GALE G WIH Y+E +  I ++ ++ T +I+MY KCG L  A  VF  +  K V  WN 
Sbjct: 247 VGALEQGMWIHKYVEKT-GIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNC 305

Query: 180 MIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           MI G+AMHG G+DA++LF EM     + P  ITF+ +L+ACAH+GLV EG  +F  M D 
Sbjct: 306 MIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDV 365

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           + I+P  EHYGCMV+LL+RAG++EEA K++ +M + PD+ + G LLGACR+HGN+ LGE+
Sbjct: 366 HGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEE 425

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           +   +I  +  NSG YV+L N+YA+ G W+ VA VR LM ++GV+KEPG S IE+   V+
Sbjct: 426 VGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVN 485

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           EF+AG   HP ++ IY  + E+   ++  G+VP T  VLHD+ E++++N L  HSEKLA+
Sbjct: 486 EFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAI 545

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           A+GL+ T+ G ++++ KNLRVC DCH   K+ISK     I++RDR+RFHHF NG CSC D
Sbjct: 546 AYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKD 605

Query: 479 YW 480
           YW
Sbjct: 606 YW 607



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 11/237 (4%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGY-AQHGLANEALVLFRRMLAEKVEPNEVTA 110
           +K G++  A  LF  +   D   +N +   + +     + +L+ +  ML   V PN  T 
Sbjct: 47  SKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTF 106

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            +++ AC      E  + +H+++        +      LI++Y   GSL DAR VF  ++
Sbjct: 107 PSLIRAC---KLEEEAKQLHAHVLKF-GFGGDTYALNNLIHVYFAFGSLDDARRVFCTMS 162

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           D +VV W S++ GY+  G   +A ++F  M     K + +++  +++         E   
Sbjct: 163 DPNVVSWTSLVSGYSQWGLVDEAFRVFELM---PCKKNSVSWNAMIACFVKGNRFREAFA 219

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLL 284
            F  M+ E  +E        M++  +  G +E+    +K V    I  DS L  T++
Sbjct: 220 LFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTII 276


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/505 (44%), Positives = 314/505 (62%), Gaps = 34/505 (6%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------------ 55
           ++++  T++V  YA+ G V  A KLF  MP+R+ VS T ML  Y + G            
Sbjct: 205 RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM 264

Query: 56  -------------------EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
                              E+  AR++F+ M+E+D   WN MI  + + GL  EAL LF 
Sbjct: 265 PVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFA 324

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           RM  E V  N  + ++VLS C  + +L+ GR +H+ +  S     ++ V + LI MY KC
Sbjct: 325 RMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRS-EFDQDLYVASVLITMYVKC 383

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  A+ +F+R   KDVV+WNSMI GY+ HG G++AL +F++MC   ++P ++TFIG+L
Sbjct: 384 GDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVL 443

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SAC+++G V EG   F  MK  Y +EP +EHY CMV+LL RAG+V+EA +LV  M +EPD
Sbjct: 444 SACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPD 503

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           +++WG LLGACR H  + L E   E L      N+G YVLLS++YA  G W  V  +R  
Sbjct: 504 AIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKK 563

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           +  + V K PGCS IE+  KVH F  GD + HP+   I  MLE+++G+L+  GY P    
Sbjct: 564 INRR-VIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSF 622

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHD+ E++K +SL  HSE+LAVA+GL+    G  I+++KNLRVC DCH+  KLI+K TG
Sbjct: 623 VLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 682

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I++RD NRFHHF +G+CSC D+W
Sbjct: 683 REIILRDANRFHHFKDGSCSCKDFW 707



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 140/269 (52%), Gaps = 20/269 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           + L  +TS +  Y R GD+ +A K+F    +PQR++ S   M++ Y +  +   A +LFD
Sbjct: 17  RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFD 76

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M +++ V +N MI GY ++G+  +A  +F  M     E N V+  +++    Q G +E 
Sbjct: 77  QMPQRNTVSFNGMISGYVKNGMVADARKVFDVM----PERNVVSWTSMVRGYVQEGMVEE 132

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
              +  + E  R    NV   T +I    K   + DA+ +FD + +KDVVV  +MI GY 
Sbjct: 133 AEKL--FWEMPRR---NVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYC 187

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
             G   +A +LF+EM ++R   +  T+  ++S  A  G V+  R+ F  M +   +    
Sbjct: 188 QVGRLDEARELFDEM-KVR---NVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVS--- 240

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
             +  M+   +++G+++EA++L   M ++
Sbjct: 241 --WTAMLMGYTQSGRMKEAFELFEAMPVK 267



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 33/278 (11%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            ++V  Y        A  LF  MPQR+ VS   M++ Y K G VA AR +FD M E++VV
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV 115

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  M+ GY Q G+  EA  LF  M              V+S    IG L       S I
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPRRN----------VVSWTVMIGGLLK----ESRI 161

Query: 134 ENSRNI-----KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           ++++ +     + +V V T +I  Y + G L +AR +FD +  ++V  W +M+ GYA +G
Sbjct: 162 DDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNG 221

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
               A +LF  M     + +++++  +L     +G + E    F  M  ++ +       
Sbjct: 222 RVDVARKLFEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIV------- 270

Query: 249 GC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            C  M+     AG++  A  +   MK E D   W  ++
Sbjct: 271 ACNEMILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMI 307



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 152/358 (42%), Gaps = 67/358 (18%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++++   TS+V  Y + G V  AEKLF  MP+R++VS T M+    K+  +  A+ LFD 
Sbjct: 111 ERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDM 170

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV----------------------- 103
           + EKDVV    MI GY Q G  +EA  LF  M    V                       
Sbjct: 171 IPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLF 230

Query: 104 ----EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGS 158
               E NEV+  A+L     +G  +SGR   ++ E    + V   V    +I  +   G 
Sbjct: 231 EVMPERNEVSWTAML-----MGYTQSGRMKEAF-ELFEAMPVKWIVACNEMILQFGLAGE 284

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  AR++F+ + ++D   WN+MI  +   G   +AL LF  M R  +  +  + I +LS 
Sbjct: 285 MHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSV 344

Query: 219 CAHAGLVNEGRRFFNTM------KDEYAIEPKVEHY------------------------ 248
           CA    ++ GR+    +      +D Y     +  Y                        
Sbjct: 345 CASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMW 404

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
             M+   S+ G  EEA  +  DM    ++PD V +  +L AC   G +  G +I E +
Sbjct: 405 NSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAM 462



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 32/181 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D+DLYV++ L+ +Y + GD++ A+ +F                           R
Sbjct: 362 VRSEFDQDLYVASVLITMYVKCGDLVRAKGIF--------------------------NR 395

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF D     VV WN MI GY+QHGL  EAL +F  M +  V+P+EVT + VLSAC   G
Sbjct: 396 FLFKD-----VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSG 450

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ G  I   ++ +  ++  ++    ++++  + G + +A  + +++  + D +VW ++
Sbjct: 451 KVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGAL 510

Query: 181 I 181
           +
Sbjct: 511 L 511


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/438 (49%), Positives = 296/438 (67%), Gaps = 4/438 (0%)

Query: 46  TMLTCYAKQGE--VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T+L  YAK GE  VA AR +FD + +KD V +N ++  YAQ G++NEA  +FRR++ EKV
Sbjct: 223 TLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKV 282

Query: 104 EP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
              N +T   VL A    GAL  G+ IH  +     ++ +V VGT++I+MY KCG ++ A
Sbjct: 283 VTFNCITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETA 341

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           RL FDR+ +K+V  W +MI GY MHG    AL+LF  M    ++P+ ITF+ +L+AC+HA
Sbjct: 342 RLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL + G  +FN MK  + +EP +EHYGCMV+LL RAG +++AY L+  MK+EPDS++W +
Sbjct: 402 GLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSS 461

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACR+H N+ L E     L   + +N G Y+LLS+IYA  G W  V RVR  MK +G+
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGL 521

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            K PG S +EL+ +VH FL GD  HP+ ++IY  L E+N  L   GYV  T  V HD+ E
Sbjct: 522 VKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE 581

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+ +L VHSEKLA+AFG+++T PG+++ +VKNLRVC DCH V KLISK   R+ ++RD
Sbjct: 582 EEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRD 641

Query: 463 RNRFHHFVNGTCSCGDYW 480
             RFHHF +G CSCGDYW
Sbjct: 642 AKRFHHFKDGFCSCGDYW 659



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 160/319 (50%), Gaps = 17/319 (5%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +SL+D+++      + ++ F    Q  +   + ++  Y+  G++  AR +FD++ ++++V
Sbjct: 87  SSLLDIFSGKQ---THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIV 143

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEP------NEVTAVAVLSACGQIGALESGR 127
            W  MI GY  +G A +A+ LF+ +L E+ +       + +  V+V+SAC ++ A     
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTE 203

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYA 185
            IHS++   R     V VG  L++ Y+K G   +  AR +FD++ DKD V +NS++  YA
Sbjct: 204 SIHSFVIK-RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262

Query: 186 MHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             G   +A  +F  + + ++   + IT   +L A +H+G +  G+   + +     +E  
Sbjct: 263 QSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVI-RMGLEDD 321

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           V     ++++  + G+VE A +L  D     +   W  ++    +HG+ A   ++   +I
Sbjct: 322 VIVGTSIIDMYCKCGRVETA-RLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 305 SQNLANSGTYVLLSNIYAA 323
              +     Y+   ++ AA
Sbjct: 381 DSGV--RPNYITFVSVLAA 397



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 54/325 (16%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +++ DV  WN +I   A+ G + EAL  F  M    + P   +    + AC  +  + SG
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSG 95

Query: 127 RWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           +  H  +++   ++   ++ V +ALI MYS CG L+DAR VFD +  +++V W SMI GY
Sbjct: 96  KQTHQQAFVFGYQS---DIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDIT-------FIGLLSAC---AHAGLVNEGRRFF-- 232
            ++G   DA+ LF ++  I     D T        + ++SAC   A  GL      F   
Sbjct: 153 DLNGNALDAVSLFKDLL-IEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIK 211

Query: 233 ----------NTMKDEYA-----------------IEPKVEHYGCMVNLLSRAGQVEEAY 265
                     NT+ D YA                 ++     Y  ++++ +++G   EA+
Sbjct: 212 RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAF 271

Query: 266 ----KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLS 318
               +L+ +  +  + +   T+L A    G + +G+ I + +I   L +    GT ++  
Sbjct: 272 DVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII-- 329

Query: 319 NIYAAIGNWDGVARVRTLMKEKGVQ 343
           ++Y   G  +        MK K V+
Sbjct: 330 DMYCKCGRVETARLAFDRMKNKNVR 354



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 6/202 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K G V  AR+ FD M+ K+V  W  MI GY  HG A +AL LF  M+   V 
Sbjct: 326 TSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN +T V+VL+AC   G  + G    + ++    ++  ++    ++++  + G L+ A  
Sbjct: 386 PNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSAC-AH 221
           +  ++  + D ++W+S++    +H   K+       + R+  L PS+  +  LLS   A 
Sbjct: 446 LIQKMKMEPDSIIWSSLLAACRIH---KNVELAEISVARLFELDPSNCGYYMLLSHIYAD 502

Query: 222 AGLVNEGRRFFNTMKDEYAIEP 243
           +G   +  R   TMK+   ++P
Sbjct: 503 SGRWKDVERVRMTMKNRGLVKP 524


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 298/440 (67%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++SLTTM   YAK+G V  AR  F+ ME+ +++ WN MI GYA +G   EA+ LFR M+ 
Sbjct: 224 VISLTTM---YAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 280

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + +  + +T  + + A  Q+G+LE  RW+  YI  S   + +  V T LI+MY+KCGS+ 
Sbjct: 281 KNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSE-YRDDTFVNTGLIDMYAKCGSIY 339

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDRV DKDVV+W+ MI+GY +HG G++A+ L+NEM +  + P+D TFIGLL+AC 
Sbjct: 340 LARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACK 399

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           ++GLV EG   F+ M D + IEP  +HY C+V+LL RAG + +AY  +M M I+P   +W
Sbjct: 400 NSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVW 458

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC++H  + LGE  AE L   +  N+G YV LSN+YA+   W  VA VR +M +K
Sbjct: 459 GALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQK 518

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ G SSIE++  +  F  GD  HPKSKEI+  L+ +   LKA GYVP  + VLHD+
Sbjct: 519 GLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDL 578

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
             ++ + +L  HSE+LAVA+G+IST PGT+++I KNLR C +CH+  KLISK   R+I++
Sbjct: 579 NHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIII 638

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSCGD+W
Sbjct: 639 RDAKRFHHFKDGVCSCGDFW 658



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 139/256 (54%), Gaps = 11/256 (4%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q SLVS+      YAK G+++ AR++FD + ++ VV W  +I GY Q+G   EAL +F+ 
Sbjct: 123 QNSLVSM------YAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 176

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M    V+P+ +  V+V++A   +  L  G+ IH  +     ++    +  +L  MY+K G
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV-TKLGLEFEPDIVISLTTMYAKRG 235

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++ AR  F+R+   ++++WN+MI GYA +G+G++A++LF EM    ++   IT    + 
Sbjct: 236 LVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVL 295

Query: 218 ACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           A A  G +   R     + K EY  +  V     ++++ ++ G +  A + V D   + D
Sbjct: 296 ASAQVGSLELARWLDGYISKSEYRDDTFVN--TGLIDMYAKCGSIYLA-RCVFDRVADKD 352

Query: 277 SVLWGTLLGACRLHGN 292
            VLW  ++    LHG+
Sbjct: 353 VVLWSVMIMGYGLHGH 368



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 132/257 (51%), Gaps = 9/257 (3%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+V  A   F ++ E D++ WN +I GY Q  + +  + ++  M   +V PN  T + VL
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            ACG       G+ IH           NV V  +L++MY+K G +  AR+VFD+++D+ V
Sbjct: 93  KACGGTSVEGIGKQIHGQ-TFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTV 151

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W S+I GY  +G   +AL +F EM +  +KP  I  + +++A  +   + +G+   + 
Sbjct: 152 VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS-IHG 210

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           +  +  +E + +    +  + ++ G VE A +   +   +P+ +LW  ++     + N  
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAKRGLVEVA-RFFFNRMEKPNLILWNAMISG---YANNG 266

Query: 295 LGE---KIAEYLISQNL 308
            GE   K+   +I++N+
Sbjct: 267 YGEEAIKLFREMITKNI 283



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
            IN     G +  A   F  V++ D+++WN++I GY         ++++ +M   ++ P+
Sbjct: 25  FINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPN 84

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             TF+ +L AC    +   G++  +    +Y     V     +V++ ++ GQ+  A ++V
Sbjct: 85  CFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA-RIV 142

Query: 269 MDMKIEPDSVLWGTLLGACRLHGN 292
            D   +   V W +++     +G+
Sbjct: 143 FDKLHDRTVVSWTSIISGYVQNGD 166


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/440 (48%), Positives = 303/440 (68%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+SLT     YAK G V  A+  FD M+  +V+ WN MI GYA++G A EA+ LF  M++
Sbjct: 293 LISLTAF---YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS 349

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P+ VT  + + A  Q+G+LE  +W+  Y+  S N   ++ V T+LI+MY+KCGS++
Sbjct: 350 RNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKS-NYGSDIFVNTSLIDMYAKCGSVE 408

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDR +DKDVV+W++MI+GY +HG G +A+ L++ M +  + P+D+TFIGLL+AC 
Sbjct: 409 FARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACN 468

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG   F+ MKD + I P+ EHY C+V+LL RAG + EA   +M + IEP   +W
Sbjct: 469 HSGLVKEGWELFHCMKD-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVW 527

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC+++  + LGE  A  L S +  N+G YV LSN+YA+   WD VA VR LM+EK
Sbjct: 528 GALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREK 587

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ G S IE++ K+  F  GD  HP +KEI+  L+ +   LK  G+VP T+ VLHD+
Sbjct: 588 GLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDL 647

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
             ++K+ +L  HSE++AVA+GLIST PGT+++I KNLR C +CH+  KLISK   R+I++
Sbjct: 648 NYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIV 707

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF +G CSCGDYW
Sbjct: 708 RDANRFHHFKDGLCSCGDYW 727



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 135/250 (54%), Gaps = 13/250 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G +  A+V+FD +  + +V W  +I GYAQ+G A EAL +F +M    V+P+
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI----NMYSKCGSLKDA 162
            +  V++L A   +  LE GR IH ++     IK+ ++   AL+      Y+KCG +  A
Sbjct: 255 WIALVSILRAYTDVDDLEQGRSIHGFV-----IKMGLEDEPALLISLTAFYAKCGLVTVA 309

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           +  FD++   +V++WN+MI GYA +G  ++A+ LF+ M    +KP  +T    + A A  
Sbjct: 310 KSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQV 369

Query: 223 GLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           G +   +   + + K  Y  +  V     ++++ ++ G VE A + V D   + D V+W 
Sbjct: 370 GSLELAQWMDDYVSKSNYGSDIFVN--TSLIDMYAKCGSVEFA-RRVFDRNSDKDVVMWS 426

Query: 282 TLLGACRLHG 291
            ++    LHG
Sbjct: 427 AMIMGYGLHG 436



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 47/339 (13%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++   +  G++  AR LFD+    DV  WN +I  Y+++ +  + + ++R M    V
Sbjct: 91  MTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGV 150

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T   VL AC ++        IH  I        +V V   L+ +Y+KCG +  A+
Sbjct: 151 HPDGFTFPYVLKACTELLDFGLSCIIHGQIIK-YGFGSDVFVQNGLVALYAKCGHIGVAK 209

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA----- 218
           +VFD +  + +V W S+I GYA +G   +AL++F++M    +KP  I  + +L A     
Sbjct: 210 VVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVD 269

Query: 219 ------------------------------CAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
                                          A  GLV   + FF+ MK    I      +
Sbjct: 270 DLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIM-----W 324

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             M++  ++ G  EEA  L   M    I+PDSV   + + A    G++ L + + +Y+  
Sbjct: 325 NAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSK 384

Query: 306 QNLANSGTYVLLS--NIYAAIGNWDGVARVRTLMKEKGV 342
            N   S  +V  S  ++YA  G+ +   RV     +K V
Sbjct: 385 SNYG-SDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDV 422


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/438 (48%), Positives = 296/438 (67%), Gaps = 4/438 (0%)

Query: 46  TMLTCYAKQGE--VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T+L  YAK GE  VA AR +FD + +KD V +N ++  YAQ G++NEA  +FRR++  KV
Sbjct: 223 TLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKV 282

Query: 104 EP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
              N +T   VL A    GAL  G+ IH  +     ++ +V VGT++I+MY KCG ++ A
Sbjct: 283 VTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETA 341

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R  FDR+ +K+V  W +MI GY MHG    AL+LF  M    ++P+ ITF+ +L+AC+HA
Sbjct: 342 RKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL  EG R+FN MK  + +EP +EHYGCMV+LL RAG +++AY L+  MK++PDS++W +
Sbjct: 402 GLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSS 461

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACR+H N+ L E     L   + +N G Y+LLS+IYA  G W  V RVR +MK +G+
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            K PG S +EL+ +VH FL GD  HP+ ++IY  L E+N  L   GYV  T  V HD+ E
Sbjct: 522 VKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE 581

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+ +L VHSEKLA+AFG+++T PG+++ +VKNLRVC DCH V KLISK   R+ ++RD
Sbjct: 582 EEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRD 641

Query: 463 RNRFHHFVNGTCSCGDYW 480
             RFHHF +G CSCGDYW
Sbjct: 642 AKRFHHFKDGGCSCGDYW 659



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 160/319 (50%), Gaps = 17/319 (5%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +SL D+++      + ++ F    Q  +   + ++  Y+  G++  AR +FD++ ++++V
Sbjct: 87  SSLFDIFSGKQ---THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIV 143

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT------AVAVLSACGQIGALESGR 127
            W  MI GY  +G A +A+ LF+ +L ++ + ++         V+V+SAC ++ A     
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYA 185
            IHS++   R     V VG  L++ Y+K G   +  AR +FD++ DKD V +NS++  YA
Sbjct: 204 SIHSFVIK-RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262

Query: 186 MHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             G   +A ++F  + + ++   + IT   +L A +H+G +  G+   + +     +E  
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI-RMGLEDD 321

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           V     ++++  + G+VE A K    MK   +   W  ++    +HG+ A   ++   +I
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 305 SQNLANSGTYVLLSNIYAA 323
              +     Y+   ++ AA
Sbjct: 381 DSGV--RPNYITFVSVLAA 397



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 52/324 (16%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +++ DV  WN +I   A+ G + EAL+ F  M    + P   +    + AC  +  + SG
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95

Query: 127 RWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           +  H  +++   ++   ++ V +ALI MYS CG L+DAR VFD +  +++V W SMI GY
Sbjct: 96  KQTHQQAFVFGYQS---DIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITF------IGLLSACAHA---GLVNEGRRFF--- 232
            ++G   DA+ LF ++        D  F      + ++SAC+     GL      F    
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 233 ---------NTMKDEYA-----------------IEPKVEHYGCMVNLLSRAGQVEEAY- 265
                    NT+ D YA                 ++     Y  ++++ +++G   EA+ 
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFE 272

Query: 266 ---KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSN 319
              +LV +  +  +++   T+L A    G + +G+ I + +I   L +    GT ++  +
Sbjct: 273 VFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII--D 330

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQ 343
           +Y   G  +   +    MK K V+
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVR 354



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K G V  AR  FD M+ K+V  W  MI GY  HG A +AL LF  M+   V 
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PN +T V+VL+AC   G  +E  RW ++ ++    ++  ++    ++++  + G L+ A 
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNA-MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 164 LVFDRVNDK-DVVVWNSMIVGYAMH 187
            +  R+  K D ++W+S++    +H
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIH 469


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/438 (48%), Positives = 296/438 (67%), Gaps = 4/438 (0%)

Query: 46  TMLTCYAKQGE--VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T+L  YAK GE  VA AR +FD + +KD V +N ++  YAQ G++NEA  +FRR++  KV
Sbjct: 223 TLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKV 282

Query: 104 EP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
              N +T   VL A    GAL  G+ IH  +     ++ +V VGT++I+MY KCG ++ A
Sbjct: 283 VTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETA 341

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R  FDR+ +K+V  W +MI GY MHG    AL+LF  M    ++P+ ITF+ +L+AC+HA
Sbjct: 342 RKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL  EG R+FN MK  + +EP +EHYGCMV+LL RAG +++AY L+  MK++PDS++W +
Sbjct: 402 GLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSS 461

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACR+H N+ L E     L   + +N G Y+LLS+IYA  G W  V RVR +MK +G+
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            K PG S +EL+ +VH FL GD  HP+ ++IY  L E+N  L   GYV  T  V HD+ E
Sbjct: 522 VKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE 581

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+ +L VHSEKLA+AFG+++T PG+++ +VKNLRVC DCH V KLISK   R+ ++RD
Sbjct: 582 EEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRD 641

Query: 463 RNRFHHFVNGTCSCGDYW 480
             RFHHF +G CSCGDYW
Sbjct: 642 AKRFHHFKDGGCSCGDYW 659



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 160/319 (50%), Gaps = 17/319 (5%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +SL D+++      + ++ F    Q  +   + ++  Y+  G++  AR +FD++ ++D+V
Sbjct: 87  SSLFDIFSGKQ---THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIV 143

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT------AVAVLSACGQIGALESGR 127
            W  MI GY  +G A +A+ LF+ +L ++ + ++         V+V+SAC ++ A     
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYA 185
            IHS++   R     V VG  L++ Y+K G   +  AR +FD++ DKD V +NS++  YA
Sbjct: 204 SIHSFVIK-RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262

Query: 186 MHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             G   +A ++F  + + ++   + IT   +L A +H+G +  G+   + +     +E  
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI-RMGLEDD 321

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           V     ++++  + G+VE A K    MK   +   W  ++    +HG+ A   ++   +I
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 305 SQNLANSGTYVLLSNIYAA 323
              +     Y+   ++ AA
Sbjct: 381 DSGV--RPNYITFVSVLAA 397



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 147/324 (45%), Gaps = 52/324 (16%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +++ DV  WN +I   A+ G + EAL+ F  M    + P   +    + AC  +  + SG
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95

Query: 127 RWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           +  H  +++   ++   ++ V +ALI MYS CG L+DAR VFD +  +D+V W SMI GY
Sbjct: 96  KQTHQQAFVFGYQS---DIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGY 152

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITF------IGLLSACAHA---GLVNEGRRFF--- 232
            ++G   DA+ LF ++        D  F      + ++SAC+     GL      F    
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 233 ---------NTMKDEYA-----------------IEPKVEHYGCMVNLLSRAGQVEEAY- 265
                    NT+ D YA                 ++     Y  ++++ +++G   EA+ 
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFE 272

Query: 266 ---KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSN 319
              +LV +  +  +++   T+L A    G + +G+ I + +I   L +    GT ++  +
Sbjct: 273 VFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII--D 330

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQ 343
           +Y   G  +   +    MK K V+
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVR 354



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K G V  AR  FD M+ K+V  W  MI GY  HG A +AL LF  M+   V 
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PN +T V+VL+AC   G  +E  RW ++ ++    ++  ++    ++++  + G L+ A 
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNA-MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 164 LVFDRVNDK-DVVVWNSMIVGYAMH 187
            +  R+  K D ++W+S++    +H
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIH 469


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/461 (45%), Positives = 301/461 (65%), Gaps = 8/461 (1%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           +S   +FA   Q     LT     Y     + AA ++F+D+       WNVMI G+A  G
Sbjct: 497 MSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 556

Query: 87  LANEALVLFRRMLAEKVEP-------NEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
               +L L+ +M+ + ++P       N V+ ++VL ACG +GAL  G W HSY+  +   
Sbjct: 557 RFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQT-GF 615

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           + ++ V TA+++MYSKCGSL  AR +FD    KD+V W++MI  Y +HG G+ A+ LF++
Sbjct: 616 EFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQ 675

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M +  ++PS +TF  +LSAC+H+GL+ EG+ +F  M +E+ I  K+ +Y CMV+LL RAG
Sbjct: 676 MVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG 735

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
           Q+ EA  L+ +M +EPD+ +WG+LLGACR+H N+ L EKIA++L   +  ++G +VLLSN
Sbjct: 736 QLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSN 795

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           IYAA   W+ V +VR +M  +G  K  G S +E  N+VH+F  GD  HP+ +++Y  LEE
Sbjct: 796 IYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEE 855

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           +   +K  GYVP T  VLHDI E+ K+ +L  HSE+LA+AFGLI+T PGT+++I KNLR+
Sbjct: 856 LAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRI 915

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   KLISK   R I++RD +RFH F +G CSCGDYW
Sbjct: 916 CGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 36/233 (15%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            D DL +  SL++LYA+ G    A  LF+ MP++ ++S +TM+ CYA       A  LF 
Sbjct: 202 FDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFH 261

Query: 66  DMEEK-----------------------------------DVVCWNVMIDGYAQHGLANE 90
           +M EK                                   DVV W  ++ GYAQ+G+A +
Sbjct: 262 EMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYK 321

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           ++ +FR ML++ ++P+ V  V +L+A  ++G  +    +H Y+  S     NV VG +LI
Sbjct: 322 SMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLI 380

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +YSKCGSL DA  +F  +  +DVV+W+SMI  Y +HG G +AL++F++M ++
Sbjct: 381 ELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQV 433



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 19/340 (5%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLT----CYAKQGEVAAARVLFDDMEEKD 71
           LVDL+    +  S  +L + + +  ++  T   T     YAK   + AAR +FD+    +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGRWIH 130
           V  WN  +  Y +     E L LF  M+    E P+  T    L AC  +  LE G+ IH
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            + + +  I  ++ VG+AL+ +YSKCG + +A  VF+     D V+W SM+ GY  +   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 191 KDALQLFNEMCRIRLKPSDITFI-GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           ++AL LF++M  +     D+  +  LL+  A  G        F+ M      E  V  + 
Sbjct: 187 EEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-----EKDVISWS 241

Query: 250 CMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            M+   +      EA  L  +M   + EP+SV   + L AC +  N+  G+KI +  + +
Sbjct: 242 TMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK 301

Query: 307 NLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE 345
           ++    ++V L + YA  G  +  +   R ++ + G+Q +
Sbjct: 302 DVV---SWVALLSGYAQNGMAYKSMGVFRNMLSD-GIQPD 337



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 137/330 (41%), Gaps = 90/330 (27%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLT---------------- 49
           +  D++V ++LV+LY++ G +  A K+F    +   V  T+M+T                
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFS 194

Query: 50  --------------------CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
                                YAK G    A  LF  M EKDV+ W+ MI  YA +  AN
Sbjct: 195 QMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAAN 254

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           EAL LF  M+ ++ EPN VT V+ L AC     LE G+ IH         K+ V      
Sbjct: 255 EALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIH---------KIAVW----- 300

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
                                 KDVV W +++ GYA +G    ++ +F  M    ++P  
Sbjct: 301 ----------------------KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDA 338

Query: 210 ITFIGLLSACAHAGLVNEG--------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
           +  + +L+A +  G+  +         R  FN+          V     ++ L S+ G +
Sbjct: 339 VAVVKILAASSELGIFQQALCLHGYVVRSGFNS---------NVFVGASLIELYSKCGSL 389

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +A KL   M +  D V+W +++ A  +HG
Sbjct: 390 GDAVKLFKGMIVR-DVVIWSSMIAAYGIHG 418



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 136/310 (43%), Gaps = 26/310 (8%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+   + +++V  SL++LY++ G +  A KLF  M  R +V  ++M+  Y   G    A
Sbjct: 364 VVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEA 423

Query: 61  RVLFDDM---EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV---AVL 114
             +FD M    +    C+ + +    Q  LA  +  L   +      P +V A    A  
Sbjct: 424 LEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHI------PWKVKAFYMRAHF 477

Query: 115 SACGQIGALESGRWIHSYIENSRNI-----KVNVQVGTALINMYSKCGSLKDARLVFDRV 169
              G    +       +   +  NI     + + ++ T    MY     +  A +VF+ +
Sbjct: 478 RWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDI 537

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-------ITFIGLLSACAHA 222
            +    +WN MI G+A  G    +L+L+++M    LKP +       ++ + +L AC + 
Sbjct: 538 PNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNL 597

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G + +G  +F++   +   E  +     ++++ S+ G ++ A + + D     D V W  
Sbjct: 598 GALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA-RCLFDETAGKDLVCWSA 655

Query: 283 LLGACRLHGN 292
           ++ +  +HG+
Sbjct: 656 MIASYGIHGH 665


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/440 (48%), Positives = 298/440 (67%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++SLTTM   YAK+G V  AR  F+ ME+ +++ WN MI GYA +G   EA+ LFR M+ 
Sbjct: 239 VISLTTM---YAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMIT 295

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + +  + +T  + + A  Q+G+LE  RW+  YI  S   + +  V T LI+MY+KCGS+ 
Sbjct: 296 KNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSE-YRDDTFVNTGLIDMYAKCGSIY 354

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDRV DKDVV+W+ MI+GY +HG G++A+ L+NEM +  + P+D TFIGLL+AC 
Sbjct: 355 LARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACK 414

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           ++GLV EG   F+ M D + IEP  +HY C+V+LL RAG + +AY  +M M I+P   +W
Sbjct: 415 NSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVW 473

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC++H  + LGE  AE L   +  N+G YV LSN+YA+   W  VA VR +M +K
Sbjct: 474 GALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQK 533

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G+ K+ G SSIE++  +  F  GD  HPKSKEI+  L+ +   LKA GYVP  + VLHD+
Sbjct: 534 GLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDL 593

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
             ++ + +L  HSE+LAVA+G+IST PGT+++I KNLR C +CH+  KLISK   R+I++
Sbjct: 594 NHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIII 653

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSCGD+W
Sbjct: 654 RDAKRFHHFKDGVCSCGDFW 673



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 139/256 (54%), Gaps = 11/256 (4%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q SLVS+      YAK G+++ AR++FD + ++ VV W  +I GY Q+G   EAL +F+ 
Sbjct: 138 QNSLVSM------YAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKE 191

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M    V+P+ +  V+V++A   +  L  G+ IH  +     ++    +  +L  MY+K G
Sbjct: 192 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV-TKLGLEFEPDIVISLTTMYAKRG 250

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++ AR  F+R+   ++++WN+MI GYA +G+G++A++LF EM    ++   IT    + 
Sbjct: 251 LVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVL 310

Query: 218 ACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           A A  G +   R     + K EY  +  V     ++++ ++ G +  A + V D   + D
Sbjct: 311 ASAQVGSLELARWLDGYISKSEYRDDTFVN--TGLIDMYAKCGSIYLA-RCVFDRVADKD 367

Query: 277 SVLWGTLLGACRLHGN 292
            VLW  ++    LHG+
Sbjct: 368 VVLWSVMIMGYGLHGH 383



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 132/257 (51%), Gaps = 9/257 (3%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+V  A   F ++ E D++ WN +I GY Q  + +  + ++  M   +V PN  T + VL
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            ACG       G+ IH           NV V  +L++MY+K G +  AR+VFD+++D+ V
Sbjct: 108 KACGGTSVEGIGKQIHGQ-TFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTV 166

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W S+I GY  +G   +AL +F EM +  +KP  I  + +++A  +   + +G+   + 
Sbjct: 167 VSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS-IHG 225

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           +  +  +E + +    +  + ++ G VE A +   +   +P+ +LW  ++     + N  
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAKRGLVEVA-RFFFNRMEKPNLILWNAMISG---YANNG 281

Query: 295 LGE---KIAEYLISQNL 308
            GE   K+   +I++N+
Sbjct: 282 YGEEAIKLFREMITKNI 298



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
            IN     G +  A   F  V++ D+++WN++I GY         ++++ +M   ++ P+
Sbjct: 40  FINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPN 99

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             TF+ +L AC    +   G++  +    +Y     V     +V++ ++ GQ+  A ++V
Sbjct: 100 CFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA-RIV 157

Query: 269 MDMKIEPDSVLWGTLLGACRLHGN 292
            D   +   V W +++     +G+
Sbjct: 158 FDKLHDRTVVSWTSIISGYVQNGD 181


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/473 (44%), Positives = 307/473 (64%), Gaps = 6/473 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFA--TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V  +L+ +YA+ G V  A  +         ++++ T++L  Y K G V  AR +F+ + +
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+GL N+AL LFR M+ E  EPN  T  A+LS    +  LE G+ I
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQI 431

Query: 130 H-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           H S I+   +      V  ALI MY+K G++  A+ VFD  N  K++V W SMI+  A H
Sbjct: 432 HASAIKAGES--STPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G GK+A+ LF  M  + +KP  IT++G+LSAC H GLV +GR+++N M + + IEP + H
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSH 549

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CM++L  RAG ++EAY  +  M IEPD++ WG+LL +C++H N  L +  AE L+  +
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLID 609

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             NSG Y+ L+N+Y+A G W+  A+ R LMK++GV+KE G S I + N+VH F   D+ H
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIH 669

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+  EIY ++ EI   +K  G++P T+ VLHD+ E+ K+  L+ HSEKLA+AFGL++T  
Sbjct: 670 PQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPE 729

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            T+++I+KNLRVC DCH+  K ISK  GR+I++RD  RFHHF +G+CSC DYW
Sbjct: 730 NTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 192/387 (49%), Gaps = 48/387 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L   +Y+  +L+  YA+ G +  A  +F  MP +S  S  T+++ YAKQG    +R
Sbjct: 37  IKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSR 96

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            L  +M + D V W  +I GY Q GL + A+ +F +M++E+V P++ T   VLS+C    
Sbjct: 97  RLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQ 156

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN----------- 170
            L+ GR IHS++     +   V V T+L+NMY+KCG    A++VFDR+            
Sbjct: 157 TLDIGRKIHSFVVK-LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALI 215

Query: 171 --------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSD 209
                               D+D+V WNSMI GY+  G+  +AL +F++M     LKP +
Sbjct: 216 SLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDN 275

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG----CMVNLLSRAGQVEEAY 265
            T   +LSACA+   +N G++        Y +  + E  G     ++++ +++G VE A 
Sbjct: 276 FTLASILSACANLEKLNIGKQI-----HAYILRAETETSGAVGNALISMYAKSGGVEIAR 330

Query: 266 KLVMDMKIEPDSVL-WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
            +V   +    +++ + +LL      GN+    +I   L  +++  + T +++   Y   
Sbjct: 331 LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV-AWTAMIVG--YVQN 387

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSI 351
           G W+    +  LM  +G   EP   ++
Sbjct: 388 GLWNDALELFRLMVNEG--PEPNSYTL 412


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 301/436 (69%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y +  +V AAR +FD + E  VVC+N MI GYA+    NEAL LFR M  + ++P
Sbjct: 171 TLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKP 230

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE+T ++VLS+C  +G+L+ G+WIH Y +     K  V+V TALI+M++KCGSL DA  +
Sbjct: 231 NEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKY-VKVNTALIDMFAKCGSLDDAVSI 289

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  KD   W++MIV YA HG  ++++ +F  M    ++P +ITF+GLL+AC+H GLV
Sbjct: 290 FENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLV 349

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGR +F+ M  E+ I P ++HYG MV+LL RAG +E+AY+ +  + I P  +LW  LL 
Sbjct: 350 EEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLA 409

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  H N+ L EK++E ++  + ++ G YV+LSN+YA    W+ V  +R +MK++   K 
Sbjct: 410 ACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKV 469

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE++N VHEF +GD     + +++  L+E+   LK  GYVP T +V+H D+G+++
Sbjct: 470 PGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQE 529

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSEKLA+AFGL++T PGT+I++VKNLRVC DCH+  KLIS   GRK+++RD  
Sbjct: 530 KEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLRDVQ 589

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSC D+W
Sbjct: 590 RFHHFEDGKCSCRDFW 605



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 145/280 (51%), Gaps = 7/280 (2%)

Query: 33  FATMPQRSLVSLTTMLTCY----AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           +A    +  VS  T L  +      +  ++ AR LFD M E D+V +N +  GY++    
Sbjct: 53  YAIKSHQEDVSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNP 112

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            E   LF  +L + + P+  T  ++L AC    ALE GR +H  +     +  NV V   
Sbjct: 113 LEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHC-LSMKLGVDDNVYVCPT 171

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LINMY++C  +  AR VFDR+ +  VV +N+MI GYA      +AL LF EM    LKP+
Sbjct: 172 LINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPN 231

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +IT + +LS+CA  G ++ G ++ +    ++     V+    ++++ ++ G +++A  + 
Sbjct: 232 EITLLSVLSSCALLGSLDLG-KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIF 290

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            +M+ + D+  W  ++ A   HG       + E + S+N+
Sbjct: 291 ENMRYK-DTQAWSAMIVAYANHGQAENSMLMFERMRSENV 329



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  +AK G +  A  +F++M  KD   W+ MI  YA HG A  ++++F RM +E V+
Sbjct: 271 TALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQ 330

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+T + +L+AC   G +E GR   S++ +   I  +++   +++++  + G L+DA  
Sbjct: 331 PDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYE 390

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHG 188
             D++      ++W  ++   + H 
Sbjct: 391 FIDKLPISPTPMLWRILLAACSSHN 415


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/439 (48%), Positives = 303/439 (69%), Gaps = 12/439 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           L++ +  YA  G +  AR + DD   E D VC   M D   + G   EAL +F +M  EK
Sbjct: 196 LSSAIRMYASFGRLVEARRILDDKGGEVDAVC---MPD---RKGCFMEALEIFHQMQKEK 249

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P +    +VLSAC  +GAL+ GRWIH+Y + + +I+++  +GT+L++MY+KCG +  A
Sbjct: 250 IRPRKFVLPSVLSACANLGALDQGRWIHTYAKRN-SIQLDGVLGTSLVDMYAKCGRIDLA 308

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+++++K+V  WN+MI G AMHG  +DA+ LF++M    + P++ITF+G+L+ACAH 
Sbjct: 309 WEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHG 365

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV +G   FN+M+ EY +EP++EHYGC+V+LL RAG + EA K+V  +  EP   +WG 
Sbjct: 366 GLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGA 425

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR HGN+ LGE++ + L+     NSG Y LLSNIYA  G W+ V  VR LMKE+G+
Sbjct: 426 LLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGI 485

Query: 343 QKEPGCSSIELSN-KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +  PG S I+L   +VH+F+ GD  HP+ K+IY ML+++   L+ EGY P    VL DI 
Sbjct: 486 KTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDID 545

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+ ++  HSEKLA+ FGLI+T PGT+I+IVKNLRVC DCH+  KLIS+   R+I++R
Sbjct: 546 EEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVR 605

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           DR R+HHF NG CSC D+W
Sbjct: 606 DRIRYHHFRNGACSCKDFW 624



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD + + +V  WN MI    ++    +A++L+  M+     PN+ T  AVL AC   G 
Sbjct: 114 VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 173

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDKDVVVWNSMI 181
           +  G  +H+++     +  +  + ++ I MY+  G L +AR +  D+  + D V      
Sbjct: 174 VAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPD-- 230

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
                 G   +AL++F++M + +++P       +LSACA+ G +++G R+ +T     +I
Sbjct: 231 ----RKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSI 285

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +        +V++ ++ G+++ A+++   M  +  S  W  ++G   +HG
Sbjct: 286 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSS-WNAMIGGLAMHG 334



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 97/249 (38%), Gaps = 36/249 (14%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L +G    SYI  S  +K    V T   N Y    S + +  VFD V   +V +WN MI 
Sbjct: 79  LRTGHLQDSYIAGSL-VKSYANVST---NRYL---SFESSLRVFDFVRKPNVFLWNCMIK 131

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM------K 236
               +     A+ L+ EM     +P+  T+  +L AC+ AG+V EG +    +       
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 191

Query: 237 DEYAIEPKVEHYGCMVNLL-------SRAGQVE------------EAYKLVMDM---KIE 274
           D + +   +  Y     L+        + G+V+            EA ++   M   KI 
Sbjct: 192 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQKEKIR 251

Query: 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARV 333
           P   +  ++L AC   G +  G  I  Y    ++   G     L ++YA  G  D    V
Sbjct: 252 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 311

Query: 334 RTLMKEKGV 342
              M  K V
Sbjct: 312 FEKMSNKEV 320


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 290/445 (65%), Gaps = 5/445 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           L+    ++  Y+K     AAR +FDD  +EE++VV W VMI G+AQ+G +N+AL LF  M
Sbjct: 446 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 505

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSK 155
           ++E   V PN  T   +L AC  + A+  G+ IH+Y+  + R       V   LI+MYSK
Sbjct: 506 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK 565

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  AR VFD ++ K  + W SM+ GY MHG G +AL +F++M +    P DITF+ +
Sbjct: 566 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 625

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+H G+V++G  +F++M  +Y + P+ EHY C ++LL+R+G++++A++ V DM +EP
Sbjct: 626 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEP 685

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            +V+W  LL ACR+H N+ L E     L+  N  N G+Y L+SNIYA  G W  VAR+R 
Sbjct: 686 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 745

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMK+ G++K PGCS ++       F  GD  HP S +IY +LE +   +KA GYVP+T  
Sbjct: 746 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 805

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+ E++K N L  HSEKLA+A+GL++T PG  I+I KNLRVC DCH+ F  ISK   
Sbjct: 806 ALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVD 865

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I++RD +RFHHF NG+CSCG YW
Sbjct: 866 HEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 19/301 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D++V  +L+D YA+ G + +A K+F  M  + +VS   M+  Y++ G   AA  LF +M 
Sbjct: 299 DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMR 358

Query: 69  EK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++    DVV W  +I GY+Q G ++EAL LFR+M+     PN VT ++VLSAC  +GA  
Sbjct: 359 KENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFS 418

Query: 125 SGRWIHSYIENSRNIKVNVQVG---------TALINMYSKCGSLKDARLVFDRV--NDKD 173
            G  IH+Y   +  + ++   G          ALI+MYSKC S K AR +FD +   +++
Sbjct: 419 QGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 478

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           VV W  MI G+A +G   DAL+LF EM      + P+  T   +L ACAH   +  G++ 
Sbjct: 479 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 538

Query: 232 FNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
              +   +  E        C++++ S+ G V+ A + V D   +  ++ W +++    +H
Sbjct: 539 HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA-RHVFDSMSQKSAISWTSMMTGYGMH 597

Query: 291 G 291
           G
Sbjct: 598 G 598



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 18/290 (6%)

Query: 33  FATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
              +P    +S     T ++  Y   G    A ++ + +     V WN++I  + + G  
Sbjct: 77  LPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRL 136

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           + A+ +  RML     P+  T   VL ACG++ +   G   H  I      + NV +  A
Sbjct: 137 DSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNA 195

Query: 149 LINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-R 204
           L+ MYS+CGSL++A ++FD +  +   DV+ WNS++  +        AL LF++M  I  
Sbjct: 196 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 255

Query: 205 LKPSD-----ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRA 258
            KP++     I+ + +L AC     V + +    N +++     P V     +++  ++ 
Sbjct: 256 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKC 313

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           G +E A K+   M+ + D V W  ++      GN     ++ + +  +N+
Sbjct: 314 GLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENI 362



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 33/227 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V+  L+D+Y++ GDV +A  +F +M Q+S +S T+M+T Y                   
Sbjct: 554 FVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY------------------- 594

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                         HG  +EAL +F +M      P+++T + VL AC   G ++ G    
Sbjct: 595 ------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 642

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     +    +     I++ ++ G L  A R V D   +   VVW +++    +H  
Sbjct: 643 DSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSN 702

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            + A    N++  +  + +D ++  + +  A AG   +  R  + MK
Sbjct: 703 VELAEHALNKLVEMNAE-NDGSYTLISNIYATAGRWKDVARIRHLMK 748


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/472 (45%), Positives = 312/472 (66%), Gaps = 1/472 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K   +  + +  +L+ +Y++ GD++ A KLF       L+S  +M++ Y K   V  A
Sbjct: 402 SLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNA 461

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + +FD M EKDVV W+ MI GYAQ+ L +E L LF+ M     +P+E T V+V+SAC ++
Sbjct: 462 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 521

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            ALE G+W+H+YI+ +  + +NV +GT LI+MY KCG ++ A  VF  + +K +  WN++
Sbjct: 522 AALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNAL 580

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I+G AM+G  + +L +F+ M +  + P++ITF+G+L AC H GLV+EG+  F +M  ++ 
Sbjct: 581 ILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHK 640

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P V+HYGCMV+LL RAG+++EA +L+  M + PD   WG LLGAC+ HG+  +G ++ 
Sbjct: 641 IQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVG 700

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             LI     + G +VLLSNIYA+ G WD V  +R +M +  V K PGCS IE +  +HEF
Sbjct: 701 RKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEF 760

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           LAGD  HP    I  ML E+   LK EGY P    VL D+ E++K+++L  HSEKLA+AF
Sbjct: 761 LAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAF 820

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           GLI+  P T I+I+KNLR+C DCH   KLISK   RKI++RDR+RFHHF  G
Sbjct: 821 GLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 170/371 (45%), Gaps = 72/371 (19%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           S++  Y   G+V  A+ ++  MP+RS+++  +M+  +  +G V  A  LFD+M EKD+V 
Sbjct: 284 SILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVT 343

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-I 133
           W+ +I  + Q+ +  EA+  F  M    V  +EV AV+ LSAC  +  +  G+ IHS  +
Sbjct: 344 WSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSL 403

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSL-------------------------------KDA 162
           +      +N+Q   ALI MYSKCG +                                +A
Sbjct: 404 KIGTESYINLQ--NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNA 461

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + +FD + +KDVV W+SMI GYA +    + L LF EM     KP + T + ++SACA  
Sbjct: 462 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 521

Query: 223 GLVNEGRRFF---------------NTMKDEY---------------AIEPKVEHYGCMV 252
             + +G+                   T+ D Y                IE  +  +  ++
Sbjct: 522 AALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALI 581

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK-----IAEYLI 304
             L+  G VE +  +  +MK   + P+ + +  +LGACR  G +  G+      I ++ I
Sbjct: 582 LGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKI 641

Query: 305 SQNLANSGTYV 315
             N+ + G  V
Sbjct: 642 QPNVKHYGCMV 652



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            Y Q    + A  L++ ML+  +  +  T   ++ AC    +    + +H+++       
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLK-LGFD 245

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +V V   LIN +S C ++ DA  VF+  +  D V WNS++ GY   G  ++A  ++++M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 201 CRIRLKPSD--ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
               +  S+  I   G+       GLV E  + F+ M     +E  +  +  ++    + 
Sbjct: 306 PERSIIASNSMIVLFGM------RGLVVEACKLFDEM-----LEKDMVTWSALIACFQQN 354

Query: 259 GQVEEAYKLVMDMK---IEPDSVLWGTLLGAC 287
              EEA +  + M    +  D V+  + L AC
Sbjct: 355 EMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 386


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/438 (46%), Positives = 299/438 (68%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G++  AR +FD + E+DVV    +I GYAQ GL  EAL LFRR+  E + 
Sbjct: 150 SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMR 209

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT  +VL+A   + AL+ GR +HS++  ++ +   V +  +LI+MYSKCGSL  +R 
Sbjct: 210 SNYVTYASVLTALSGLAALDHGRQVHSHVLRAK-LPFYVVLQNSLIDMYSKCGSLTYSRR 268

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAG 223
           +FD + ++ V+ WN+M+VGY+ HG G++A++LF  M    ++KP  +TF+ +LS C+H G
Sbjct: 269 IFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGG 328

Query: 224 LVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           + + G   F  M ++    EP++EHYGC+V+L  RAG+VEEA++ +  M  EP + +WG+
Sbjct: 329 MEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGS 388

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR+H N+ +GE +A  L+     N+G YV+LSN+YA+ G WD V  VR LMKEK V
Sbjct: 389 LLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAV 448

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S IEL   +H F A D  HP+ +E++  + E++  +K  GYVP+   VL+D+ +
Sbjct: 449 IKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDD 508

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L+ HSEKLA+AFGLI T  GT ++I+KNLR+C DCH   K +S+  GR++ +RD
Sbjct: 509 EQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRD 568

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFHH V GTCSCGDYW
Sbjct: 569 KNRFHHIVGGTCSCGDYW 586



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 140/261 (53%), Gaps = 14/261 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +  AR + D+M E++VV W  MI GY+Q G A+EAL LF  ML     
Sbjct: 49  TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA 108

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   VL++C      + GR IHS +  + + + ++ VG++L++MY+K G + +AR 
Sbjct: 109 PNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARR 167

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + ++DVV   ++I GYA  G  ++AL LF  + R  ++ + +T+  +L+A +    
Sbjct: 168 VFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 227

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           ++ GR+  +     + +  K+  Y      ++++ S+ G +  + + + D   E   + W
Sbjct: 228 LDHGRQVHS-----HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRR-IFDSMPERTVISW 281

Query: 281 GTLLGACRLHGNIALGEKIAE 301
             +L     HG   LG +  E
Sbjct: 282 NAMLVGYSKHG---LGREAVE 299



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           VL A+  F  + Q SL+ +      Y+K G +  +R +FD M E+ V+ WN M+ GY++H
Sbjct: 238 VLRAKLPFYVVLQNSLIDM------YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKH 291

Query: 86  GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNV 143
           GL  EA+ LF+ M  E KV+P+ VT +AVLS C   G  + G  I   + N ++  +  +
Sbjct: 292 GLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 351

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           +    +++++ + G +++A     ++  +    +W S++    +H
Sbjct: 352 EHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           +VL+ C    A+  G+ +H+++  +   +  V + T LI +Y+KC  L DAR V D + +
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKT-CYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 73

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++VV W +MI GY+  G+  +AL LF EM      P++ TF  +L++C  +     GR+ 
Sbjct: 74  RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ- 132

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            +++  + + E  +     ++++ ++AG++ EA + V D   E D V
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARR-VFDGLPERDVV 178


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/473 (45%), Positives = 309/473 (65%), Gaps = 7/473 (1%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           ++ TSLV++YA  G +  A +++  +P + +V  T ML+ YAK G V  AR +FD M EK
Sbjct: 253 HIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEK 312

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D+VCW+ MI GYA+     EAL LF  M   ++ P+++T ++V+SAC  +GAL   +WIH
Sbjct: 313 DLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIH 372

Query: 131 SYIENS---RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           +Y + +   R + +N     ALI+MY+KCG+L  AR VF+ +  K+V+ W+SMI  +AMH
Sbjct: 373 TYADKNGFGRTLPIN----NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 428

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G    A+ LF+ M    ++P+ +TFIG+L AC+HAGLV EG++FF++M +E+ I P+ EH
Sbjct: 429 GDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREH 488

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGCMV+L  RA  + +A +L+  M   P+ ++WG+L+ AC+ HG I LGE  A  L+   
Sbjct: 489 YGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELE 548

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             + G  V+LSNIYA    WD V  VR LMK KGV KE  CS IE++N+VH F+  D  H
Sbjct: 549 PDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYH 608

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
            +S EIY  L+ +   LK  GY P T  +L D+ E++K+  +  HSEKLA+ +GLI  + 
Sbjct: 609 KQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERK 668

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            + I+IVKNLR+C DCH+  KL+SK    +I+MRDR RFHHF  G CSC DYW
Sbjct: 669 ESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 38/298 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YA  G +  AR LFD M  +DVV WN+MIDGY+Q+   +  L L+  M     E
Sbjct: 155 SALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTE 214

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL----- 159
           P+ +    VLSAC   G L  G+ IH +I+++   +V   + T+L+NMY+ CG++     
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDN-GFRVGSHIQTSLVNMYANCGAMHLARE 273

Query: 160 --------------------------KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                                     +DAR +FDR+ +KD+V W++MI GYA      +A
Sbjct: 274 VYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEA 333

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           LQLFNEM R R+ P  IT + ++SACA+ G + +  ++ +T  D+      +     +++
Sbjct: 334 LQLFNEMQRRRIVPDQITMLSVISACANVGALVQA-KWIHTYADKNGFGRTLPINNALID 392

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAEYLISQN 307
           + ++ G + +A ++  +M    + + W +++ A  +HG+    IAL  ++ E  I  N
Sbjct: 393 MYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPN 449



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF  +        N ++  +++       L L+  +       +  +   +L A  ++ A
Sbjct: 71  LFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSA 130

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G  IH           +  + +ALI MY+ CG + DAR +FD+++ +DVV WN MI 
Sbjct: 131 LNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMID 190

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           GY+ +      L+L+ EM     +P  I    +LSACAHAG ++ G+     +KD
Sbjct: 191 GYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKD 245



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K    + L ++ +L+D+YA+ G+++ A ++F  MP+++++S ++M+  +A  G+  +A  
Sbjct: 377 KNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSA-- 434

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                        + LF RM  + +EPN VT + VL AC   G 
Sbjct: 435 -----------------------------IALFHRMKEQNIEPNGVTFIGVLYACSHAGL 465

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           +E G+   S + N   I    +    ++++Y +   L+ A  L+       +V++W S++
Sbjct: 466 VEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLM 525

Query: 182 VGYAMHG 188
                HG
Sbjct: 526 SACQNHG 532



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 14/120 (11%)

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
             I + +AC   G + + R  F+ M         V  +  M++  S+    +   KL  +
Sbjct: 156 ALIAMYAAC---GRIMDARFLFDKMSHR-----DVVTWNIMIDGYSQNAHYDHVLKLYEE 207

Query: 271 MKI---EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS--NIYAAIG 325
           MK    EPD+++  T+L AC   GN++ G+ I ++ I  N    G+++  S  N+YA  G
Sbjct: 208 MKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQF-IKDNGFRVGSHIQTSLVNMYANCG 266


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 212/473 (44%), Positives = 307/473 (64%), Gaps = 6/473 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFA--TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V  +L+ +YA+ G V  A  +         ++++ T++L  Y K G V  AR +F+ + +
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+GL N+AL LFR M+ E  EPN  T  A+LS    +  LE G+ I
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQI 431

Query: 130 H-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           H S I+   +      V  ALI MY+K G++  A+ VFD  N  K++V W SMI+  A H
Sbjct: 432 HASAIKAGES--STPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G GK+A+ LF  M  + +KP  IT++G+LSAC H GLV +GR+++N M + + IEP + H
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSH 549

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CM++L  RAG ++EAY  +  M IEPD++ WG+LL +C++H N  L +  AE L+  +
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLID 609

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             NSG Y+ L+N+Y+A G W+  A+ R LMK++GV+KE G S I + N+VH F   D+ H
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIH 669

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+  EIY ++ EI   +K  G++P T+ VLHD+ E+ K+  L+ HSEKLA+AFGL++T  
Sbjct: 670 PQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPE 729

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            T+++I+KNLRVC DCH+  K ISK  GR+I++RD  RFHHF +G+CSC DYW
Sbjct: 730 NTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 192/387 (49%), Gaps = 48/387 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L   +Y+  +L+  YA+ G +  A  +F  MP +S  S  T+++ YAKQG    +R
Sbjct: 37  IKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSR 96

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            L  +M + D V W  +I GY Q GL + A+ +F +M++E+V P++ T   VLS+C    
Sbjct: 97  RLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQ 156

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN----------- 170
            L+ GR IHS++     +   V V T+L+NMY+KCG    A++VFDR+            
Sbjct: 157 TLDIGRKIHSFVVK-LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALI 215

Query: 171 --------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSD 209
                               D+D+V WNSMI GY+  G+  +AL +F++M     LKP +
Sbjct: 216 SLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDN 275

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG----CMVNLLSRAGQVEEAY 265
            T   +LSACA+   +N G++        Y +  + E  G     ++++ +++G VE A 
Sbjct: 276 FTLASILSACANLEKLNIGKQI-----HAYILRAETETSGAVGNALISMYAKSGGVEIAR 330

Query: 266 KLVMDMKIEPDSVL-WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
            +V   +    +++ + +LL      GN+    +I   L  +++  + T +++   Y   
Sbjct: 331 LIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV-AWTAMIVG--YVQN 387

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSI 351
           G W+    +  LM  +G   EP   ++
Sbjct: 388 GLWNDALELFRLMVNEG--PEPNSYTL 412


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/461 (45%), Positives = 306/461 (66%), Gaps = 6/461 (1%)

Query: 24  GDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           GDV     +   + Q  L S    + ++++ Y+K   V  A  +F++++ K +V WN MI
Sbjct: 391 GDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMI 450

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GYAQ+G  NEA+  F +M  + ++P+  T V+V+ A  ++  L   +WIH  +  +  +
Sbjct: 451 LGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRT-CL 509

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
             NV V TAL++MY+KCG++  AR +FD ++++ V  WN+MI GY  HG GK AL+LF +
Sbjct: 510 DKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEK 569

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M +  +KP+++TF+ +LSAC+H+GLV EG ++F +MK +Y +EP ++HYG MV+LL RA 
Sbjct: 570 MKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRAN 629

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
           ++ EA+  +  M IEP   ++G +LGACR+H N+ LGEK A  +   +  + G +VLL+N
Sbjct: 630 RLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLAN 689

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           IYA    WD VARVRT M++KG+QK PG S +EL N+VH F +G   HP++K+IY  LE 
Sbjct: 690 IYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLET 749

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           +   +KA GY+P T  V HD+ +  K+  L  HSEKLA+AF L++T PGT+I + KNLRV
Sbjct: 750 LGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRV 808

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K IS  T R+I++RD  RFHHF +GTCSCGDYW
Sbjct: 809 CGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 159/285 (55%), Gaps = 8/285 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++ ++T ++  YAK   V  A  +FD M E+D+VCWN +I GYAQ+G    AL L  RM 
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E   P+ +T V++L A   +G+L  GR IH Y   +   +  V V TAL++MYSKCGS+
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRA-GFESFVNVSTALVDMYSKCGSV 327

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             ARL+FDR+  K VV WNSMI GY  +G    A+++F +M   +++ +++T +G L AC
Sbjct: 328 GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHAC 387

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G V +G RF + + D+  +   V     ++++ S+  +V+ A ++  +++     V 
Sbjct: 388 ADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ-HKTLVS 445

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYA 322
           W  ++     +G I    +  +Y     L N    ++ ++S I A
Sbjct: 446 WNAMILGYAQNGRI---NEAIDYFCKMQLQNIKPDSFTMVSVIPA 487



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 145/300 (48%), Gaps = 38/300 (12%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VST+LVD+Y++ G V +A  +F  M  +++VS  +M+  Y + G+  AA  +F       
Sbjct: 313 VSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIF------- 365

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                                   ++M+ E+VE   VT +  L AC  +G +E GR++H 
Sbjct: 366 ------------------------QKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHK 401

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
            ++    +  +V V  +LI+MYSKC  +  A  +F+ +  K +V WN+MI+GYA +G   
Sbjct: 402 LLDQ-LELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRIN 460

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+  F +M    +KP   T + ++ A A   ++ +  ++ + +     ++  V     +
Sbjct: 461 EAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQA-KWIHGLVIRTCLDKNVFVATAL 519

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG----NIALGEKIAEYLISQN 307
           V++ ++ G V  A KL  DM  E     W  ++     HG     + L EK+ + +I  N
Sbjct: 520 VDMYAKCGAVHTARKL-FDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPN 578



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 17/292 (5%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           L +E LF    Q  LVSL      + K G +  A  +F  +E+K    ++ M+ GYA++ 
Sbjct: 105 LYSEHLF----QTKLVSL------FCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNS 154

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQV 145
             ++A+  F RM  + V P       +L  CG    L  G+ IH   I N      NV  
Sbjct: 155 SLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVN--GFASNVFA 212

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
            T ++NMY+KC  +++A  +FDR+ ++D+V WN++I GYA +GFGK AL+L   M     
Sbjct: 213 MTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGK 272

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           +P  IT + +L A A  G +  GR     +M+  +  E  V     +V++ S+ G V  A
Sbjct: 273 RPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGF--ESFVNVSTALVDMYSKCGSVGTA 330

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
            +L+ D       V W +++     +G+     +I + ++ + +  +   V+
Sbjct: 331 -RLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVM 381



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  LDK+++V+T+LVD+YA+ G V +A KLF  M +R + +   M+  Y          
Sbjct: 505 IRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGY---------- 554

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HGL   AL LF +M  E ++PNEVT + VLSAC   G
Sbjct: 555 ---------------------GTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSG 593

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            +E G      ++    ++  +    A++++  +   L +A
Sbjct: 594 LVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEA 634


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/486 (44%), Positives = 315/486 (64%), Gaps = 10/486 (2%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  L+ +++V  +L+ +Y + G V  ++K+F     R L S  T++  Y   G ++ A
Sbjct: 141 AVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLA 200

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + LFD M E+DVV W+ +I GY Q G   EAL  F +ML    +PNE T V+ L+AC  +
Sbjct: 201 KELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNL 260

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
            AL+ G+WIH+YI     IK+N ++  ++I+MY+KCG ++ A R+ F+    + V +WN+
Sbjct: 261 VALDQGKWIHAYIGKGE-IKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNA 319

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G+AMHG   +A+ +F +M   ++ P+ +TFI LL+AC+H  +V EG+ +F  M  +Y
Sbjct: 320 MIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDY 379

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           AI P++EHYGCMV+LLSR+G ++EA  ++  M + PD  +WG LL ACR++ ++  G +I
Sbjct: 380 AITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRI 439

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE----PGCSSIELSN 355
              +   +  + G +VLLSNIY+  G W+     R L ++  + ++    PGCSSIEL  
Sbjct: 440 GRIIKGMDPNHIGCHVLLSNIYSTSGRWN---EARILREKNEISRDRKKIPGCSSIELKG 496

Query: 356 KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSE 414
             H+FL GD  HP+S+EIY  L+E+   LK+ GYVP+   +LHDI  E+ K+ +L VHSE
Sbjct: 497 TFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSE 556

Query: 415 KLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTC 474
           KLA+AFGL++T  GT I+IVKNLRVC DCH   K ISK   R I++RDR R+HHF +G C
Sbjct: 557 KLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGIC 616

Query: 475 SCGDYW 480
           SC DYW
Sbjct: 617 SCKDYW 622



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 158/348 (45%), Gaps = 50/348 (14%)

Query: 18  DLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY----------AKQGEVAAARVLFDDM 67
           D Y+R   ++ + K    + Q     +TT L  +          A    ++ A  LFD +
Sbjct: 14  DHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAACASLSYAHKLFDQI 73

Query: 68  EEKDVVCWNVMIDGY--AQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALE 124
            + D+  +N MI  +  + H   N +L++FR +  +  + PN  + V   SACG    ++
Sbjct: 74  PQPDLFIYNTMIKAHSLSPHSCHN-SLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQ 132

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSK----------------------------- 155
            G  +  +      ++ NV V  ALI MY K                             
Sbjct: 133 EGEQVRIHAVKV-GLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAY 191

Query: 156 --CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
              G++  A+ +FD + ++DVV W+++I GY   G   +AL  F++M +I  KP++ T +
Sbjct: 192 VGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLV 251

Query: 214 GLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
             L+AC++   +++G+     + K E  +  ++     ++++ ++ G++E A ++  + K
Sbjct: 252 SALAACSNLVALDQGKWIHAYIGKGEIKMNERL--LASIIDMYAKCGEIESASRVFFEHK 309

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSN 319
           ++    LW  ++G   +HG       + E +  + ++ N  T++ L N
Sbjct: 310 VKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLN 357


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/451 (46%), Positives = 303/451 (67%), Gaps = 9/451 (1%)

Query: 34  ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
           A +   +LVS T + T Y +  ++ +AR +FD M EK +  WN MI GYAQ+GL   A+ 
Sbjct: 342 ARLDADALVS-TALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVA 400

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           LF+ M    V+PN +T  + LSAC  +GAL  G+W+H  I   + +++NV V TALI+MY
Sbjct: 401 LFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEK-LELNVYVMTALIDMY 459

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +KCGS+ +AR +FDR+++K+VV WN+MI GY +HG G +AL+L+ +M   R+ P+  TF+
Sbjct: 460 AKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFL 519

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            ++ AC+H GLV+EG++ F  M +EY I P +EH  CMV+LL RAG++ EA +L+ +   
Sbjct: 520 SVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEF-- 577

Query: 274 EPDSVL----WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
            P S +    WG LLGAC +H N  L +  ++ L   +  N+G YVLLSN+Y +  ++  
Sbjct: 578 -PQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSE 636

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389
            A VR   K + + K PGC+ IE+ ++ H F+AGD  HP+S+ IY  LE +   +   GY
Sbjct: 637 AAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGY 696

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKL 449
            P T+  L+D+ E++K++ ++VHSEKLA+AFGL+ST+PGT I+I+KNLRVC DCH   K 
Sbjct: 697 QPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKF 756

Query: 450 ISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ISK T R I++RD +RFHHF +G CSCGDYW
Sbjct: 757 ISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T +++ Y+K G++ +A+ LFD M+  D+V +N +I GY+ +G+   ++ LF+ + A   
Sbjct: 250 VTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW 309

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T VAV+      G     R +H+++  +R +  +  V TAL  +Y +   ++ AR
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR-LDADALVSTALTTLYCRLNDMESAR 368

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD + +K +  WN+MI GYA +G  + A+ LF  M  + ++P+ IT    LSACAH G
Sbjct: 369 SIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLG 428

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+     +  E  +E  V     ++++ ++ G + EA + + D     + V W  +
Sbjct: 429 ALSLGKWVHRIISKE-KLELNVYVMTALIDMYAKCGSIAEA-RSIFDRMDNKNVVSWNAM 486

Query: 284 LGACRLHGNIALGEKI-AEYLISQNLANSGTYVLLSNIYA 322
           +    LHG  A   K+  + L ++ L  S T+  LS IYA
Sbjct: 487 ISGYGLHGQGAEALKLYKDMLDARILPTSSTF--LSVIYA 524



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 152/319 (47%), Gaps = 55/319 (17%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACG 118
           AR +FD +   D + WN ++ G       +EAL  F RM+ A +V P+  T  + L A  
Sbjct: 168 ARKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAA 223

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           +   +  GR +H Y      +  +  V T L+++YSKCG +  A+ +FDR+++ D+V +N
Sbjct: 224 EASHMAMGRCVHGYGVKC-GLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYN 282

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG-----------LLSACAHAGLVN- 226
           ++I GY+++G  + +++LF E+     +P+  T +            LL+ C HA +V  
Sbjct: 283 ALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKA 342

Query: 227 -----------------------EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
                                    R  F+ M     +E  +E +  M++  ++ G  E 
Sbjct: 343 RLDADALVSTALTTLYCRLNDMESARSIFDAM-----LEKTMESWNAMISGYAQNGLTEM 397

Query: 264 A---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL--LS 318
           A   ++L+ ++ ++P+ +   + L AC   G ++LG K    +IS+       YV+  L 
Sbjct: 398 AVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYVMTALI 456

Query: 319 NIYAAIGNWDGVARVRTLM 337
           ++YA  G+   +A  R++ 
Sbjct: 457 DMYAKCGS---IAEARSIF 472


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 290/445 (65%), Gaps = 5/445 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           L+    ++  Y+K     AAR +FDD  +EE++VV W VMI G+AQ+G +N+AL LF  M
Sbjct: 453 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 512

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSK 155
           ++E   V PN  T   +L AC  + A+  G+ IH+Y+  + R       V   LI+MYSK
Sbjct: 513 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK 572

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  AR VFD ++ K  + W SM+ GY MHG G +AL +F++M +    P DITF+ +
Sbjct: 573 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 632

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+H G+V++G  +F++M  +Y + P+ EHY C ++LL+R+G++++A++ V DM +EP
Sbjct: 633 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEP 692

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            +V+W  LL ACR+H N+ L E     L+  N  N G+Y L+SNIYA  G W  VAR+R 
Sbjct: 693 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 752

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMK+ G++K PGCS ++       F  GD  HP S +IY +LE +   +KA GYVP+T  
Sbjct: 753 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 812

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+ E++K N L  HSEKLA+A+GL++T PG  I+I KNLRVC DCH+ F  ISK   
Sbjct: 813 ALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVD 872

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I++RD +RFHHF NG+CSCG YW
Sbjct: 873 HEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 19/301 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D++V  +L+D YA+ G + +A K+F  M  + +VS   M+  Y++ G   AA  LF +M 
Sbjct: 306 DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMR 365

Query: 69  EK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++    DVV W  +I GY+Q G ++EAL LFR+M+     PN VT ++VLSAC  +GA  
Sbjct: 366 KENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFS 425

Query: 125 SGRWIHSYIENSRNIKVNVQVG---------TALINMYSKCGSLKDARLVFDRV--NDKD 173
            G  IH+Y   +  + ++   G          ALI+MYSKC S K AR +FD +   +++
Sbjct: 426 QGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 485

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           VV W  MI G+A +G   DAL+LF EM      + P+  T   +L ACAH   +  G++ 
Sbjct: 486 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 545

Query: 232 FNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
              +   +  E        C++++ S+ G V+ A + V D   +  ++ W +++    +H
Sbjct: 546 HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA-RHVFDSMSQKSAISWTSMMTGYGMH 604

Query: 291 G 291
           G
Sbjct: 605 G 605



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 18/290 (6%)

Query: 33  FATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
              +P    +S     T ++  Y   G    A ++ + +     V WN++I  + + G  
Sbjct: 84  LPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRL 143

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           + A+ +  RML     P+  T   VL ACG++ +   G   H  I      + NV +  A
Sbjct: 144 DSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNA 202

Query: 149 LINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-R 204
           L+ MYS+CGSL++A ++FD +  +   DV+ WNS++  +        AL LF++M  I  
Sbjct: 203 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 262

Query: 205 LKPSD-----ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRA 258
            KP++     I+ + +L AC     V + +    N +++     P V     +++  ++ 
Sbjct: 263 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN--GTFPDVFVGNALIDAYAKC 320

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           G +E A K+   M+ + D V W  ++      GN     ++ + +  +N+
Sbjct: 321 GLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENI 369



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 33/227 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V+  L+D+Y++ GDV +A  +F +M Q+S +S T+M+T Y                   
Sbjct: 561 FVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY------------------- 601

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                         HG  +EAL +F +M      P+++T + VL AC   G ++ G    
Sbjct: 602 ------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 649

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     +    +     I++ ++ G L  A R V D   +   VVW +++    +H  
Sbjct: 650 DSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSN 709

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            + A    N++  +  + +D ++  + +  A AG   +  R  + MK
Sbjct: 710 VELAEHALNKLVEMNAE-NDGSYTLISNIYATAGRWKDVARIRHLMK 755


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/518 (42%), Positives = 320/518 (61%), Gaps = 42/518 (8%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLT------------- 49
           K     +++V+ SL+ +Y+R G    A  LF  MP R + S   M++             
Sbjct: 143 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 202

Query: 50  --------------------------CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
                                      YAK G + +A  +F+ +  KDV+ WN +I GYA
Sbjct: 203 VLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262

Query: 84  QHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           Q+GLA+EA+ +++ M   +++ PN+ T V++L A   +GAL+ G  IH  +  + N+ ++
Sbjct: 263 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLD 321

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V T LI++Y KCG L DA  +F +V  +  V WN++I  + +HG  +  L+LF EM  
Sbjct: 322 VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 381

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             +KP  +TF+ LLSAC+H+G V EG+  F  M+ EY I+P ++HYGCMV+LL RAG +E
Sbjct: 382 EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLE 440

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
            AY  + DM ++PD+ +WG LLGACR+HGNI LG+  ++ L   +  N G YVLLSNIYA
Sbjct: 441 MAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYA 500

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
            +G W+GV +VR+L +E+G++K PG S+IE++ KV  F  G+  HPK KEIY  L  +  
Sbjct: 501 NVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTA 560

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPD 442
            +K+ GY+P    VL D+ E +K++ L  HSE+LA+AFG+IST P + I+I KNLRVC D
Sbjct: 561 KMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGD 620

Query: 443 CHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           CH   K IS+ T R+I++RD NRFHHF +G CSCGDYW
Sbjct: 621 CHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 135/276 (48%), Gaps = 12/276 (4%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL-VLFRR 97
           +S+   T ++  YA  G+V+ +R  FD + +KDV  WN MI  Y  +G  +EA+   ++ 
Sbjct: 49  QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 108

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           +L  ++ P+  T   VL AC   G L  GR IH +       + NV V  +LI+MYS+ G
Sbjct: 109 LLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCW-AFKLGFQWNVFVAASLIHMYSRFG 164

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
               AR +FD +  +D+  WN+MI G   +G    AL + +EM    +K + +T + +L 
Sbjct: 165 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 224

Query: 218 AC----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK- 272
                 A  GL++   + F  +  +  I       G   N L  A +  E YK++ + K 
Sbjct: 225 VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL--ASEAIEVYKMMEECKE 282

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           I P+   W ++L A    G +  G KI   +I  NL
Sbjct: 283 IIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 318



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 39/192 (20%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K +L  D++V+T L+D+Y + G ++ A  LF  +PQ S V+   +++C+         
Sbjct: 313 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI------- 365

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG A + L LF  ML E V+P+ VT V++LSAC   
Sbjct: 366 ------------------------HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 401

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVV 176
           G +E G+W    ++    IK +++    ++++  + G L+   + +D + D     D  +
Sbjct: 402 GFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLE---MAYDFIKDMPLQPDASI 457

Query: 177 WNSMIVGYAMHG 188
           W +++    +HG
Sbjct: 458 WGALLGACRIHG 469



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           ++ + T L+N+Y+  G +  +R  FD++  KDV  WNSMI  Y  +G   +A+  F ++ 
Sbjct: 50  SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 109

Query: 202 RI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
            +  ++P   TF  +L AC   G + +GR+  +    +   +  V     ++++ SR G 
Sbjct: 110 LVSEIRPDFYTFPPVLKAC---GTLVDGRK-IHCWAFKLGFQWNVFVAASLIHMYSRFGF 165

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL----ISQNLANSGTYV- 315
              A  L  DM    D   W  ++     +GN A    + + +    I  N     + + 
Sbjct: 166 TGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 224

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +  ++YA +G  D   +V  ++  K V
Sbjct: 225 VFVDMYAKLGLLDSAHKVFEIIPVKDV 251


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/479 (44%), Positives = 307/479 (64%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
           +  D + +  ++   AR  D+ + E ++    Q    +S+   T  +  Y K GE+A AR
Sbjct: 215 MRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAR 274

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M +KD V W  M+ GYA +G   EAL LF  M AE V P+       LSAC ++G
Sbjct: 275 EVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLG 334

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ GR     ++    +  N  +GTALI+MY+KCGS  +A +VF ++  KD++VWN+MI
Sbjct: 335 ALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMI 393

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G  M G  K A  L  +M +  +K +D TFIGLL +C H GL+ +GRR+F+ M   Y I
Sbjct: 394 LGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHI 453

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYGC+V+LLSRAG ++EA++L+ DM +  ++V+ G LLG C++H N  L E +  
Sbjct: 454 SPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLT 513

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     NSG YV+LSNIY+  G W+  A++R  MKEKGV+K P CS +E   KVHEF 
Sbjct: 514 QLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFR 573

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP S +IY  L+E+   +K  GY P T++V+ D+ +++K+++L  HSEKLA+AF 
Sbjct: 574 VGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFN 633

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T PG +I++ KNLRVC DCH   KLIS+ T R+I++RD NRFH F +G+CSC DYW
Sbjct: 634 LLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS-LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           R G+ L A  L   +P  +    LT++LT YA+ G +  A+ +FD+M     V W  +I 
Sbjct: 135 RAGEQLHARSL--KLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALIT 192

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            Y   G   EA+ + R   A  + P+  TAV VL+AC ++  L +G  +    E    I 
Sbjct: 193 AYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQE-GIA 251

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +V V TA +++Y KCG +  AR VFD++ DKD V W +M+ GYA +G  ++AL LF  M
Sbjct: 252 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 311

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAG 259
               ++P      G LSAC   G ++ GR+    +  DE+   P +     ++++ ++ G
Sbjct: 312 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 369

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              EA+ +   M+ + D ++W  ++    + G+    EK A  LI Q
Sbjct: 370 STAEAWVVFQQMR-KKDIIVWNAMILGLGMTGH----EKTAFTLIGQ 411


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/512 (42%), Positives = 319/512 (62%), Gaps = 40/512 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATM------PQR---------------------- 39
           +D+   T +++ YA  G++  A  LFATM      P R                      
Sbjct: 323 RDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREI 382

Query: 40  -----------SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
                       L+  T ++  YAK G +  AR +FD M  +DVV W+ MI  Y ++G  
Sbjct: 383 HSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYG 442

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EA   F  M    +EP+ VT + +L+ACG +GAL+ G  I++    + ++  +V +G A
Sbjct: 443 TEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA-DLVSHVPLGNA 501

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI M +K GS++ AR +FD +  +DV+ WN+MI GY++HG  ++AL LF+ M + R +P+
Sbjct: 502 LIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPN 561

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            +TF+G+LSAC+ AG V+EGRRFF  + +   I P V+ YGCMV+LL RAG+++EA  L+
Sbjct: 562 SVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLI 621

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
             M ++P S +W +LL ACR+HGN+ + E+ AE  +  +  +   YV LS++YAA G W+
Sbjct: 622 KSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWE 681

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            VA+VR +M+ +G++KE GC+ IE++ KVH F+  D  HP   EIY  L  +   +K EG
Sbjct: 682 NVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREG 741

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           Y+P TQ VLHD+GE+QK+ ++  HSEKLA+A+G++S   GT I+I KNLRVC DCH+  K
Sbjct: 742 YIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASK 801

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ISK TGR+I+ RD +RFHHF +G CSCGDYW
Sbjct: 802 FISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 175/348 (50%), Gaps = 43/348 (12%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSL------------------- 44
           +D+     +V  YA+ GD   A +LF  M Q  L    +S                    
Sbjct: 222 RDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAV 281

Query: 45  ----------------TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
                           T+++  Y   G +  AR +FD+M+ +DVV W VMI+GYA++G  
Sbjct: 282 HAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNI 341

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            +A  LF  M  E ++P+ +T + +++AC     L   R IHS ++ +     ++ V TA
Sbjct: 342 EDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIA-GFGTDLLVSTA 400

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L++MY+KCG++KDAR VFD +  +DVV W++MI  Y  +G+G +A + F+ M R  ++P 
Sbjct: 401 LVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPD 460

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            +T+I LL+AC H G ++ G   + T   +  +   V     ++ + ++ G VE A + +
Sbjct: 461 GVTYINLLNACGHLGALDVGMEIY-TQAIKADLVSHVPLGNALIIMNAKHGSVERA-RYI 518

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYV 315
            D  +  D + W  ++G   LHGN      + + ++ +    NS T+V
Sbjct: 519 FDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFV 566



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 51/347 (14%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++  L T++  Y+  G V  AR +FD +E K VV WN +I GYAQ G   EA  LFR+
Sbjct: 89  QLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQ 148

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+ E +EP+ +T ++VL AC     L  G+ +H+ +  +  +  + ++GTAL++MY K G
Sbjct: 149 MVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVS-DFRIGTALVSMYVKGG 207

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL- 216
           S+ DAR VFD ++ +DV  +N M+ GYA  G  + A +LF  M ++ LKP+ I+F+ +L 
Sbjct: 208 SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILD 267

Query: 217 ---------------SACAHAGLVNE-------------------GRRFFNTMKDEYAIE 242
                          + C +AGLV++                    RR F+ MK      
Sbjct: 268 GCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR---- 323

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
             V  +  M+   +  G +E+A+ L   M+   I+PD + +  ++ AC +  N+    +I
Sbjct: 324 -DVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREI 382

Query: 300 AEYLISQNLANSGTYVLLS----NIYAAIGNWDGVARVRTLMKEKGV 342
              +   ++A  GT +L+S    ++YA  G      +V   M  + V
Sbjct: 383 HSQV---DIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDV 426



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 35/321 (10%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  + T+LV +Y +GG +  A ++F  +  R + +   M+  YAK G+            
Sbjct: 192 DFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD------------ 239

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 W              +A  LF RM    ++PN+++ +++L  C    AL  G+ 
Sbjct: 240 ------W-------------EKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKA 280

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H+   N+  +  +++V T+LI MY+ CGS++ AR VFD +  +DVV W  MI GYA +G
Sbjct: 281 VHAQCMNAGLVD-DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENG 339

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +DA  LF  M    ++P  IT++ +++ACA +  +N  R   + + D       +   
Sbjct: 340 NIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV-DIAGFGTDLLVS 398

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             +V++ ++ G +++A + V D     D V W  ++GA   +G      +    +   N+
Sbjct: 399 TALVHMYAKCGAIKDA-RQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNI 457

Query: 309 ANSG-TYVLLSNIYAAIGNWD 328
              G TY+ L N    +G  D
Sbjct: 458 EPDGVTYINLLNACGHLGALD 478


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/438 (46%), Positives = 299/438 (68%), Gaps = 3/438 (0%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++L  YAK G++  AR +FD + E+DVV    +I GYAQ GL  EAL LFRR+  E + 
Sbjct: 617  SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMR 676

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             N VT  +VL+A   + AL+ GR +HS++  ++ +   V +  +LI+MYSKCGSL  +R 
Sbjct: 677  SNYVTYASVLTALSGLAALDHGRQVHSHVLRAK-LPFYVVLQNSLIDMYSKCGSLTYSRR 735

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAG 223
            +FD + ++ V+ WN+M+VGY+ HG G++A++LF  M    ++KP  +TF+ +LS C+H G
Sbjct: 736  IFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGG 795

Query: 224  LVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            + + G   F  M ++    EP++EHYGC+V+L  RAG+VEEA++ +  M  EP + +WG+
Sbjct: 796  MEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGS 855

Query: 283  LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            LLGACR+H N+ +GE +A  L+     N+G YV+LSN+YA+ G WD V  VR LMKEK V
Sbjct: 856  LLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAV 915

Query: 343  QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
             KEPG S IEL   +H F A D  HP+ +E++  + E++  +K  GYVP+   VL+D+ +
Sbjct: 916  IKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDD 975

Query: 403  KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
            +QK+  L+ HSEKLA+AFGLI T  GT ++I+KNLR+C DCH   K +S+  GR++ +RD
Sbjct: 976  EQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRD 1035

Query: 463  RNRFHHFVNGTCSCGDYW 480
            +NRFHH V GTCSCGDYW
Sbjct: 1036 KNRFHHIVGGTCSCGDYW 1053



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 140/261 (53%), Gaps = 14/261 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +  AR + D+M E++VV W  MI GY+Q G A+EAL LF  ML     
Sbjct: 516 TRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA 575

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   VL++C      + GR IHS +  + + + ++ VG++L++MY+K G + +AR 
Sbjct: 576 PNEFTFATVLTSCTSSSGFQLGRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARR 634

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + ++DVV   ++I GYA  G  ++AL LF  + R  ++ + +T+  +L+A +    
Sbjct: 635 VFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 694

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           ++ GR+  +     + +  K+  Y      ++++ S+ G +  + + + D   E   + W
Sbjct: 695 LDHGRQVHS-----HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRR-IFDSMPERTVISW 748

Query: 281 GTLLGACRLHGNIALGEKIAE 301
             +L     HG   LG +  E
Sbjct: 749 NAMLVGYSKHG---LGREAVE 766



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           VL A+  F  + Q SL+ +      Y+K G +  +R +FD M E+ V+ WN M+ GY++H
Sbjct: 705 VLRAKLPFYVVLQNSLIDM------YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKH 758

Query: 86  GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNV 143
           GL  EA+ LF+ M  E KV+P+ VT +AVLS C   G  + G  I   + N ++  +  +
Sbjct: 759 GLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEI 818

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           +    +++++ + G +++A     ++  +    +W S++    +H
Sbjct: 819 EHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 863



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           +VL+ C    A+  G+ +H+++  +   +  V + T LI +Y+KC  L DAR V D + +
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKT-CYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPE 540

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++VV W +MI GY+  G+  +AL LF EM      P++ TF  +L++C  +     GR+ 
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ- 599

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            +++  + + E  +     ++++ ++AG++ EA + V D   E D V
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARR-VFDGLPERDVV 645


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/479 (44%), Positives = 307/479 (64%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
           +  D + +  ++   AR  D+ + E ++    Q    +S+   T  +  Y K GE+A AR
Sbjct: 168 MRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M +KD V W  M+ GYA +G   EAL LF  M AE V P+       LSAC ++G
Sbjct: 228 EVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLG 287

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ GR     ++    +  N  +GTALI+MY+KCGS  +A +VF ++  KD++VWN+MI
Sbjct: 288 ALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMI 346

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G  M G  K A  L  +M +  +K +D TFIGLL +C H GL+ +GRR+F+ M   Y I
Sbjct: 347 LGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHI 406

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYGC+V+LLSRAG ++EA++L+ DM +  ++V+ G LLG C++H N  L E +  
Sbjct: 407 SPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLT 466

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     NSG YV+LSNIY+  G W+  A++R  MKEKGV+K P CS +E   KVHEF 
Sbjct: 467 QLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFR 526

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP S +IY  L+E+   +K  GY P T++V+ D+ +++K+++L  HSEKLA+AF 
Sbjct: 527 VGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFN 586

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T PG +I++ KNLRVC DCH   KLIS+ T R+I++RD NRFH F +G+CSC DYW
Sbjct: 587 LLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS-LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           R G+ L A  L   +P  +    LT++LT YA+ G +  A+ +FD+M     V W  +I 
Sbjct: 88  RAGEQLHARSL--KLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALIT 145

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            Y   G   EA+ + R   A  + P+  TAV VL+AC ++  L +G  +    E    I 
Sbjct: 146 AYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQE-GIA 204

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +V V TA +++Y KCG +  AR VFD++ DKD V W +M+ GYA +G  ++AL LF  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAG 259
               ++P      G LSAC   G ++ GR+    +  DE+   P +     ++++ ++ G
Sbjct: 265 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 322

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              EA+ +   M+ + D ++W  ++    + G+    EK A  LI Q
Sbjct: 323 STAEAWVVFQQMR-KKDIIVWNAMILGLGMTGH----EKTAFTLIGQ 364


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/480 (45%), Positives = 311/480 (64%), Gaps = 6/480 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAA 60
           +  D + +  ++   AR  D+ + E ++A   Q      S+   T  L  Y K GE+  A
Sbjct: 37  MRPDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKA 96

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +FD+M+ +D V W  M+ GYA +G   EAL LF  M  E  +P+  T V  LSAC ++
Sbjct: 97  RSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRL 156

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ GR     + +   +  N  +GTALI+MY+KCGS  +A +VF ++ ++D++VWN+M
Sbjct: 157 GALDLGRQAVGMV-HWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAM 215

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I+G  M G  K A  L  +M +  +K +D TFIGLL +C H GLVN+GR++F+ M   Y 
Sbjct: 216 ILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYR 275

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P++EHYGCMV+L SRAG +EEA++L+ DM +  ++V+WG LLG C++H N  L E   
Sbjct: 276 ISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHAL 335

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + LI     NSG YV+LSNIY+  G W+  A++R  MK KG++K P  S +EL  KVH+F
Sbjct: 336 KQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKF 395

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             GD  HP S +IY  L+E+   +KA GY P T++V+ D+  ++K+N+L  HSEK+A+AF
Sbjct: 396 YVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAF 455

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI+T+PG +I++ KNLRVC DCH+  KLIS+ T R+I++RD NRFH F +G CSC DYW
Sbjct: 456 SLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 8/241 (3%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M     V W  +I  Y   G A EA+ + RR  A  + P+  TAV VL+AC ++  LE+G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             + +       +  +V V TA +++Y KCG ++ AR VFD + ++D V W +M+ GYA 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYAIEPKV 245
           +G  ++AL LF  M     KP   T +G LSAC   G ++ GR+    +  DE    P +
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
                ++++ ++ G   EA+ +V    +E D ++W  ++    + G+    EKIA  L+ 
Sbjct: 181 G--TALIDMYAKCGSTSEAW-MVFQQMLERDIIVWNAMILGLGMTGH----EKIAFALVG 233

Query: 306 Q 306
           Q
Sbjct: 234 Q 234


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/484 (46%), Positives = 310/484 (64%), Gaps = 7/484 (1%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF          SL+ +Y     +  A ++F T+P    VS T++++ Y+K G +  A  
Sbjct: 150 KFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFT 209

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIG 121
           +F  M +K+   WN M+  Y Q    +EA  LF RM AE     ++  A  +LSAC  +G
Sbjct: 210 IFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLG 269

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVVVWNS 179
           AL+ G+WIH YI+ +  I+++ ++ TA+++MY KCG L+ A  VF  +    + +  WN 
Sbjct: 270 ALDQGKWIHEYIKRN-GIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNC 328

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G AMHG G+ A+QLF EM R R+ P DITF+ LL+ACAH+GLV EGR +F+ M   Y
Sbjct: 329 MIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVY 388

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IEP++EH+GCMV+LL RAG V EA KL+ +M + PD  + GTLLGAC+ H NI LGE+I
Sbjct: 389 GIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEI 448

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              +I     NSG YVLL+N+YA  G W+  A+VR LM ++GV+K PG S IEL   VHE
Sbjct: 449 GRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHE 508

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL--HDIGEKQK-QNSLEVHSEKL 416
           F+AG+  HP++KE++  + E+   LK+ GYV  T  VL  HD  E++  +N L  HSEKL
Sbjct: 509 FIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKL 568

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AFGL  T+PG +++I+KNLR+C DCH   KLIS    R+I++RDR RFH F  G CSC
Sbjct: 569 AIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSC 628

Query: 477 GDYW 480
            DYW
Sbjct: 629 QDYW 632



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 121/269 (44%), Gaps = 48/269 (17%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGL--ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           LFD + + D   +N +I G+    L   N  L+L+  ML   V PN  T  ++L AC +I
Sbjct: 79  LFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI 138

Query: 121 GALESGRWIHSYIEN----SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
              + G  IH+++      + ++ +N     +LI+MY    +L++AR VF  +   D V 
Sbjct: 139 ---QHGMQIHAHLFKFGFGAHSVCLN-----SLIHMYVTFQALEEARRVFHTIPHPDSVS 190

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMC----------------------------RIRLKPS 208
           W S+I GY+  G   +A  +F  M                             R++ + +
Sbjct: 191 WTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENN 250

Query: 209 DI--TFIG--LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           ++   F+   +LSAC   G +++G+     +K    IE   +    +V++  + G +E+A
Sbjct: 251 NVLDKFVATTMLSACTGLGALDQGKWIHEYIKRN-GIELDSKLTTAIVDMYCKCGCLEKA 309

Query: 265 YKLVMDMKIEPDSV-LWGTLLGACRLHGN 292
            ++   + +    +  W  ++G   +HGN
Sbjct: 310 LQVFHSLPLPCRWISSWNCMIGGLAMHGN 338


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/439 (51%), Positives = 291/439 (66%), Gaps = 4/439 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK- 102
           T ++  Y+K  E+  A  LF  M   ++VV W  +I GY Q+G  + A+ LF +M  E+ 
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEG 392

Query: 103 VEPNEVTAVAVLSACG-QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           VEPNE T  +VL+AC     ++E G+  HS    S      + V +AL+ MY+K G+++ 
Sbjct: 393 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAKRGNIES 451

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VF R  D+D+V WNSMI GYA HG GK +L++F EM    L+   ITFIG++SAC H
Sbjct: 452 ANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTH 511

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLVNEG+R+F+ M  +Y I P +EHY CMV+L SRAG +E+A  L+  M     + +W 
Sbjct: 512 AGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWR 571

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           TLL ACR+H N+ LGE  AE LIS    +S  YVLLSNIYA  GNW   A+VR LM  K 
Sbjct: 572 TLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKK 631

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           V+KE G S IE+ NK   F+AGDL HP+S  IY+ LEE++  LK  GY P T+ VLHD+ 
Sbjct: 632 VKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVE 691

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E+ K+  L  HSE+LA+AFGLI+T PGT I+IVKNLRVC DCH V KLISK  GR I++R
Sbjct: 692 EEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVR 751

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF  G+CSCGDYW
Sbjct: 752 DSNRFHHFKGGSCSCGDYW 770



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 24/251 (9%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K   V     +FD+M  K+VV W  ++ GY Q+GL  +AL LF +M  E ++
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  AVL      GA+E G  +H+ +  S  +   + VG +++NMYSK   + DA+ 
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS-GLDSTIFVGNSMVNMYSKSLMVSDAKA 249

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA---- 220
           VFD + +++ V WNSMI G+  +G   +A +LF  M    +K +   F  ++  CA    
Sbjct: 250 VFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKE 309

Query: 221 -------HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
                  H  ++  G  F   +K    +              S+  ++++A+KL   M  
Sbjct: 310 MSFAKQLHCQVIKNGSDFDLNIKTALMVA------------YSKCSEIDDAFKLFCMMHG 357

Query: 274 EPDSVLWGTLL 284
             + V W  ++
Sbjct: 358 VQNVVSWTAII 368



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 3/232 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           ++ LFD+  ++ +   N ++  ++++    EAL LF  +       +  +   VL  CG 
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +     G+ +H        ++ +V VGT+L++MY K  S++D   VFD +  K+VV W S
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           ++ GY  +G  + AL+LF++M    +KP+  TF  +L   A  G V +G +  +TM  + 
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKS 222

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            ++  +     MVN+ S++  V +A K V D     ++V W +++     +G
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDA-KAVFDSMENRNAVSWNSMIAGFVTNG 273



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 40/221 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K      L VS++LV +YA+ G++ SA ++F     R LVS  +M++ YA        
Sbjct: 424 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYA-------- 475

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                  QHG   ++L +F  M ++ +E + +T + V+SAC   
Sbjct: 476 -----------------------QHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 512

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G +  G+     +    +I   ++  + ++++YS+ G L+ A  + +++       +W +
Sbjct: 513 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 572

Query: 180 MIVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +H     G+ A +       I L+P D     LLS
Sbjct: 573 LLAACRVHLNVQLGELAAEKL-----ISLQPQDSAAYVLLS 608


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/437 (46%), Positives = 296/437 (67%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++++ Y+K   V  A  +F+++  +  V WN MI GYAQ+G  +EAL  F  M +  +
Sbjct: 387 MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGM 446

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+V+ A  ++      +WIH  I  S  +  N+ V TAL++MYSKCG++  AR
Sbjct: 447 KPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS-CLDKNIFVTTALVDMYSKCGAIHMAR 505

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD ++D+ V+ WN+MI GY  HG G+ AL LF++M +  ++P+DIT++ ++SAC+H+G
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EG R F +MK +Y +EP ++HYG MV+LL RAG+++EA+  + +M I P   ++G  
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAX 625

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
            GAC++H NI +GEK A+ L   N    G +VLL+NIYA+   W  VA VR  M++KG++
Sbjct: 626 XGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLK 685

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS +EL N+VH F +G   HP+SK IY  LEE+   +KA GYVP T ++L D+ + 
Sbjct: 686 KTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDD 744

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            ++  L  HSEKLA+AFGL++T PGT+I + KNLRVC DCH   K IS  TGR+I++RD 
Sbjct: 745 VQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDM 804

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF NG CSCGDYW
Sbjct: 805 QRFHHFKNGICSCGDYW 821



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 143/252 (56%), Gaps = 4/252 (1%)

Query: 41  LVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           LV+++T L   Y+K G V  AR++FD M++K VV WN M+DGY Q+G   +A+ +F +ML
Sbjct: 282 LVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKML 341

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E ++P  VT +  L AC  +G LE G+++H +++   N+  ++ V  +LI+MYSKC  +
Sbjct: 342 EEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQ-LNLGSDISVMNSLISMYSKCKRV 400

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             A  +F+ +N +  V WN+MI+GYA +G   +AL  F+EM  + +KP   T + ++ A 
Sbjct: 401 DIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPAL 460

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A   +     ++ + +     ++  +     +V++ S+ G +  A KL  DM  +   + 
Sbjct: 461 AELSVTRHA-KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKL-FDMISDRHVIT 518

Query: 280 WGTLLGACRLHG 291
           W  ++     HG
Sbjct: 519 WNAMIDGYGTHG 530



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 2/225 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++ ++T ++  YAK  ++  A  +FD M E+D+V WN +I G++Q+G A +AL L  RM 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E   P+ +T V VL A   +G L  G+ IH Y   +   K+ V + TAL +MYSKCGS+
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL-VNISTALADMYSKCGSV 299

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + ARL+FD ++ K VV WNSM+ GY  +G  + A+ +F +M    + P+ +T +  L AC
Sbjct: 300 ETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           A  G +  G +F +   D+  +   +     ++++ S+  +V+ A
Sbjct: 360 ADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 137/277 (49%), Gaps = 13/277 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ ++K G +  A  +F+ +++K    ++ M+ GYA++     AL    RM  + V+
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 105 PNEVTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P       +L  CG    L+ G+ IH   I NS     NV   T ++NMY+KC  + DA 
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNS--FAANVFAMTGVVNMYAKCRQIDDAY 202

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FDR+ ++D+V WN++I G++ +GF K AL+L   M     +P  IT + +L A A  G
Sbjct: 203 KMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVG 262

Query: 224 LVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           L+  G+         YAI       V     + ++ S+ G VE A +L+ D   +   V 
Sbjct: 263 LLMVGKSIHG-----YAIRAGFAKLVNISTALADMYSKCGSVETA-RLIFDGMDQKTVVS 316

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           W +++     +G       + E ++ + +  +G  ++
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  LDK+++V+T+LVD+Y+                               K G +  AR
Sbjct: 477 IRSCLDKNIFVTTALVDMYS-------------------------------KCGAIHMAR 505

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD + ++ V+ WN MIDGY  HGL   AL LF +M    VEPN++T ++V+SAC   G
Sbjct: 506 KLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSG 565

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            ++ G      ++    ++ ++    A++++  + G +K+A
Sbjct: 566 LVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEA 606


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/475 (46%), Positives = 312/475 (65%), Gaps = 2/475 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +KD +  T L+D  ++ G + +A  +F  MP R+ VS   M+  Y K G+   A+ LFD 
Sbjct: 208 EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQ 267

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M E+ +V WN MI GY ++    +AL LF  ML E + PN  T +  +SA   + +L +G
Sbjct: 268 MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTG 327

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           RW+HSYI  S   K +  +GT LI MYSKCGS+K A  VF  +  K +  W S+IVG  M
Sbjct: 328 RWVHSYIVKS-GFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGM 386

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG  +  L+LF+EMCR  LKP  ITFIG+L+AC+HAG   +  R+F  M  +Y I+P +E
Sbjct: 387 HGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIE 446

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYGC++++L RAG +EEA   +  M I+ + V+W +LL   R HGNI +GE  A++LI  
Sbjct: 447 HYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDL 506

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
               +G YV+LSN+YAA G W+ V +VR +MK+KG++K+PGCSSIE    +HEF+ GD  
Sbjct: 507 APDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKS 566

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE-KQKQNSLEVHSEKLAVAFGLIST 425
           HP+++EIY+ L E+   L   G++P T  VL  + E  +K+  LE HSE+LA+AFGL++ 
Sbjct: 567 HPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNI 626

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + G+ I+I+KNLR+C DCHAV KL+S    R+I++RD +RFHHF +G+CSC D+W
Sbjct: 627 KHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 145/283 (51%), Gaps = 12/283 (4%)

Query: 34  ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
           A++   S+ S    L    +   +  A  LFD ++E  +V WN++I  Y ++  +N+A+ 
Sbjct: 42  ASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIA 101

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           LF ++L + V P+  T   VL  C ++GAL+ G+ IH  +       V+  V ++L++MY
Sbjct: 102 LFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKI-GFGVDKFVLSSLVSMY 159

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           SKCG ++  R VFDR+ DKDVV WNS+I GYA  G  + AL++F EM     +    ++ 
Sbjct: 160 SKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEM----PEKDSFSWT 215

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            L+   + +G +   R  F+ M    ++      +  M+N   +AG    A +L  D   
Sbjct: 216 ILIDGLSKSGKLEAARDVFDRMPIRNSVS-----WNAMINGYMKAGDSNTAKEL-FDQMP 269

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           E   V W +++     +       K+ E ++ ++++ + T +L
Sbjct: 270 ERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTIL 312



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 58/297 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           + F +DK  +V +SLV +Y++ G++    K+F  M  + +VS  +++  YA+ GE+  A 
Sbjct: 143 IGFGVDK--FVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELAL 200

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F++M EKD   W ++IDG ++ G    A  +F RM                       
Sbjct: 201 EMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRM----------------------- 237

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
                      I NS +         A+IN Y K G    A+ +FD++ ++ +V WNSMI
Sbjct: 238 ----------PIRNSVS-------WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMI 280

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR-RFFNTMKDEYA 240
            GY  +     AL+LF  M R  + P+  T +G +SA   +G+V+ G  R+ ++    Y 
Sbjct: 281 TGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAA--SGMVSLGTGRWVHS----YI 334

Query: 241 IEPKVEHYGCMVNLL----SRAGQVEEAYKLVMDMKIEPDSVL--WGTLLGACRLHG 291
           ++   +  G +  LL    S+ G V+ A ++   +   P   L  W +++    +HG
Sbjct: 335 VKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSI---PKKKLGHWTSVIVGLGMHG 388


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/476 (45%), Positives = 323/476 (67%), Gaps = 7/476 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D     S++  +A  GDV+SA +LF  +P  + V+ T+M+    + G+VAAAR LF++M
Sbjct: 73  RDTVSFNSMIHAHAMSGDVVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEM 132

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             +D+V WN M+ G A +    EAL LFRRM+AE   PN  T ++ L+AC   GALE+G+
Sbjct: 133 PVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGK 192

Query: 128 WIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           WIH+++E  R  +  +  +GTAL++MY+KCG+++ A  VF ++  ++   WN+MI G AM
Sbjct: 193 WIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAM 252

Query: 187 HGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           +G+   AL +F +M   R + P ++TF+G+L AC+H G V+ GR  F+ ++ +Y I   +
Sbjct: 253 NGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLIL 312

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EHY CMV+LL+R+G ++EA+K++  M ++PD+V+W  LLG CRLH ++    K+AE  IS
Sbjct: 313 EHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLHKDV----KMAETAIS 368

Query: 306 QNLAN-SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
           +  A  SG +VLLSN+YAA+G W GV  VR  M+ KG++K PGCSSIE+++ +HEF++GD
Sbjct: 369 EMEATCSGDHVLLSNLYAAVGRWSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGD 428

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP   +I+  L EI+  ++ +GYV +T  V +D+ E++K+ +L  HSEKLA+AFGLI 
Sbjct: 429 KSHPSYNDIHAKLAEISARMQQQGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIG 488

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             P  +I+IVKNLR C DCH   KL+S+    +I++RDR RFHHF  G CSC D+W
Sbjct: 489 GPPNVAIRIVKNLRFCADCHKFAKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 296/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +  AR +FD M  +DVV W+ MI  Y ++G   EA   F  M    VE
Sbjct: 403 TALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVE 462

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ VT + +L+ACG +GAL+ G  I++    + ++  ++ VG ALINM  K GS++ AR 
Sbjct: 463 PDVVTYINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIERARY 521

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +DVV WN MI GY++HG  ++AL LF+ M + R +P+ +TF+G+LSAC+ AG 
Sbjct: 522 IFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGF 581

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EGRRFF+ + D   I P +E YGCMV+LL RAG+++EA  L+  M ++P+S +W TLL
Sbjct: 582 VEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLL 641

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR++GN+ + E+ AE  +     +   YV LS++YAA G W+ VA+VR +M+ +GV+K
Sbjct: 642 AACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRK 701

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E GC+ IE+  K+H F+  D  HP++ EIY  L  +   +K EGY+P TQ VLH++GE++
Sbjct: 702 EQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQE 761

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ ++  HSEKLA+A+G++S   G  I+I KNLRVC DCH+  K ISK TGR+I+ RD +
Sbjct: 762 KEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDAS 821

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG CSCGDYW
Sbjct: 822 RFHHFKNGVCSCGDYW 837



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 153/272 (56%), Gaps = 4/272 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y   G +  AR +FD M+ +DVV W VMI GYA++    +A  LF  M  E ++
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQ 361

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ +T + +++AC     L   R IHS +  +     ++ V TAL++MY+KCG++KDAR 
Sbjct: 362 PDRITYIHIINACASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKDARQ 420

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD ++ +DVV W++MI  Y  +G G++A + F+ M R  ++P  +T+I LL+AC H G 
Sbjct: 421 VFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGA 480

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++ G   + T   +  +   +     ++N+  + G +E A  +  +M ++ D V W  ++
Sbjct: 481 LDLGMEIY-TQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMI 538

Query: 285 GACRLHGNIALGEKIAEYLISQNL-ANSGTYV 315
           G   LHGN      + + ++ +    NS T+V
Sbjct: 539 GGYSLHGNAREALDLFDRMLKERFRPNSVTFV 570



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 168/351 (47%), Gaps = 59/351 (16%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++  L T++  ++  G +  AR  FD +E K VV WN +I GYAQ G   EA  LFR+
Sbjct: 93  QLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQ 152

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMY 153
           M+ E +EP+ +T + VL AC     L+ G+  H+ +     IKV    + ++GTAL++MY
Sbjct: 153 MVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQV-----IKVGFVSDFRIGTALVSMY 207

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
            K GS+  AR VFD +  +DV  +N MI GYA  G G+ A QLF  M +   KP+ I+F+
Sbjct: 208 VKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFL 267

Query: 214 GLLSACA-----------HAGLVNEG------------------------RRFFNTMKDE 238
            +L  C+           HA  +N G                        RR F+ MK  
Sbjct: 268 SILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR 327

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIAL 295
                 V  +  M+   +    +E+A+ L   M+   I+PD + +  ++ AC    +++L
Sbjct: 328 -----DVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSL 382

Query: 296 GEKIAEYLISQNLANSGTYVL----LSNIYAAIGNWDGVARVRTLMKEKGV 342
             +I   ++    A  GT +L    L ++YA  G      +V   M  + V
Sbjct: 383 AREIHSQVVR---AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDV 430



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 150/347 (43%), Gaps = 75/347 (21%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D  + T+LV +Y +GG +  A ++F  + +R + +   M+  YAK G+     
Sbjct: 189 IKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGD----- 243

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                       +A  LF RM  E  +PN ++ +++L  C    
Sbjct: 244 --------------------------GEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPE 277

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G+ +H+   N+  +  +V+V TALI MY  CGS++ AR VFD++  +DVV W  MI
Sbjct: 278 ALAWGKAVHAQCMNTGLVD-DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMI 336

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA------------------- 222
            GYA +   +DA  LF  M    ++P  IT+I +++ACA +                   
Sbjct: 337 RGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG 396

Query: 223 ----------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
                           G + + R+ F+ M         V  +  M+      G  EEA++
Sbjct: 397 TDLLVDTALVHMYAKCGAIKDARQVFDAMSRR-----DVVSWSAMIGAYVENGCGEEAFE 451

Query: 267 LVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
               MK   +EPD V +  LL AC   G + LG +I    I  +L +
Sbjct: 452 TFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVS 498


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/436 (47%), Positives = 296/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y     ++ A  LFD+M E++ V WN +I GY  +    +A+  FR MLA+  +
Sbjct: 128 TALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQ 187

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E T V VLSAC  +GA   G+WIH +I ++R +++NV VGTALI+MY+KCG++ +   
Sbjct: 188 PSERTVVVVLSACSHLGAFNQGKWIHEFIYHNR-LRLNVFVGTALIDMYAKCGAVYEVEK 246

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + +K+V  WN +I GYAM+G G  ALQ F+ M     KP ++TF+G+L AC H GL
Sbjct: 247 VFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGL 306

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EGR  F +MK ++ ++P++EHYGCMV+LL RAG +EEA +L+  M IEPD ++W  LL
Sbjct: 307 VTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALL 366

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+HGN  LGE I + LI     N   YVLLSNIY+    W  V ++R +M  +G++K
Sbjct: 367 CACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRK 426

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCSSIE++N V+EF+A + R P+ + IY  L+ +   LK  GYV  T + L+DI +++
Sbjct: 427 VPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEE 486

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K++S+  HSEKLA+AFGL+++    +++IVKNLR+C DCH  FK++S    R I++RDRN
Sbjct: 487 KEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRN 546

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSC DYW
Sbjct: 547 RFHHFYEGFCSCRDYW 562



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N MI  Y        +L +F  M    + P+  T  AVL A  Q+     G+ IH  +  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
              I  +V   TAL+++Y  C S+ DA  +FD + +++ V WN++I GY  +     A+ 
Sbjct: 118 MGFI-CDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            F  M     +PS+ T + +LSAC+H G  N+G ++ +       +   V     ++++ 
Sbjct: 177 AFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ G V E  K+  +++ E +   W  L+    ++G
Sbjct: 236 AKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNG 270



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 34/205 (16%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  +++V T+L+D+YA+ G V   EK+F  + ++++ +   +++                
Sbjct: 221 LRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS---------------- 264

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GYA +G  + AL  F RML E  +P+EVT + VL AC   G +  
Sbjct: 265 ---------------GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTE 309

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGY 184
           GRW    ++    ++  ++    ++++  + G L++A  L+     + D ++W +++   
Sbjct: 310 GRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCAC 369

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSD 209
            +HG  K    +   +  I L+P++
Sbjct: 370 RVHGNTKLGEYIIKRL--IELEPNN 392


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/436 (47%), Positives = 296/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y     ++ A  LFD+M E++ V WN +I GY  +    +A+  FR MLA+  +
Sbjct: 128 TALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQ 187

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E T V VLSAC  +GA   G+WIH +I ++R +++NV VGTALI+MY+KCG++ +   
Sbjct: 188 PSERTVVVVLSACSHLGAFNQGKWIHEFIYHNR-LRLNVFVGTALIDMYAKCGAVYEVEK 246

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + +K+V  WN +I GYAM+G G  ALQ F+ M     KP ++TF+G+L AC H GL
Sbjct: 247 VFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGL 306

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EGR  F +MK ++ ++P++EHYGCMV+LL RAG +EEA +L+  M IEPD ++W  LL
Sbjct: 307 VTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALL 366

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+HGN  LGE I + LI     N   YVLLSNIY+    W  V ++R +M  +G++K
Sbjct: 367 CACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRK 426

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCSSIE++N V+EF+A + R P+ + IY  L+ +   LK  GYV  T + L+DI +++
Sbjct: 427 VPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEE 486

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K++S+  HSEKLA+AFGL+++    +++IVKNLR+C DCH  FK++S    R I++RDRN
Sbjct: 487 KEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRN 546

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSC DYW
Sbjct: 547 RFHHFYEGFCSCRDYW 562



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 3/216 (1%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N MI  Y        +L +F  M    + P+  T  AVL A  Q+     G+ IH  +  
Sbjct: 58  NSMIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQ 117

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
              I  +V   TAL+++Y  C S+ DA  +FD + +++ V WN++I GY  +     A+ 
Sbjct: 118 MGFI-CDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAID 176

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            F  M     +PS+ T + +LSAC+H G  N+G ++ +       +   V     ++++ 
Sbjct: 177 AFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTALIDMY 235

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ G V E  K+  +++ E +   W  L+    ++G
Sbjct: 236 AKCGAVYEVEKVFEEIR-EKNVYTWNVLISGYAMNG 270



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 34/205 (16%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  +++V T+L+D+YA+ G V   EK+F  + ++++ +   +++                
Sbjct: 221 LRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLIS---------------- 264

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GYA +G  + AL  F RML E  +P+EVT + VL AC   G +  
Sbjct: 265 ---------------GYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTE 309

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGY 184
           GRW    ++    ++  ++    ++++  + G L++A  L+     + D ++W +++   
Sbjct: 310 GRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCAC 369

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSD 209
            +HG  K    +   +  I L+P++
Sbjct: 370 RVHGNTKLGEYIIKRL--IELEPNN 392


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/468 (44%), Positives = 302/468 (64%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TS++  Y   G +  AE+ F  MP + +++   M+  + + GE++ AR +FD ME++D  
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  MI  Y + G   EAL LF +M  + V P+  + +++LS C  + +L+ GR +H+++
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
              +    +V V + L+ MY KCG L  A+LVFDR + KD+++WNS+I GYA HG G++A
Sbjct: 358 VRCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEA 416

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L++F+EM      P+ +T I +L+AC++AG + EG   F +M+ ++ + P VEHY C V+
Sbjct: 417 LKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           +L RAGQV++A +L+  M I+PD+ +WG LLGAC+ H  + L E  A+ L      N+GT
Sbjct: 477 MLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGT 536

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKE 372
           YVLLS+I A+   W  VA VR  M+   V K PGCS IE+  KVH F  G ++ HP+   
Sbjct: 537 YVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAM 596

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I MMLE+ +G L+  GY P    VLHD+ E++K +SL  HSE+LAVA+GL+    G  I+
Sbjct: 597 ILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIR 656

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCHA  KLISK T R+I++RD NRFHHF NG CSC DYW
Sbjct: 657 VMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 47/338 (13%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL---------------------- 44
           ++++   T++V  Y + G V  AE LF  MP+R+ VS                       
Sbjct: 107 ERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDM 166

Query: 45  ---------TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
                    T M+    ++G V  AR++FD+M E++VV W  MI GY Q+   + A  LF
Sbjct: 167 MPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLF 226

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
             M     E  EV+  ++L      G +E        +     I  N     A+I  + +
Sbjct: 227 EVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACN-----AMIVGFGE 277

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
            G +  AR VFD + D+D   W  MI  Y   GF  +AL LF +M +  ++PS  + I +
Sbjct: 278 VGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISI 337

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           LS CA    +  GR+    +      +  V     ++ +  + G++ +A KLV D     
Sbjct: 338 LSVCATLASLQYGRQVHAHLV-RCQFDDDVYVASVLMTMYVKCGELVKA-KLVFDRFSSK 395

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           D ++W +++     HG   LGE+  +  I   + +SGT
Sbjct: 396 DIIMWNSIISGYASHG---LGEEALK--IFHEMPSSGT 428



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 19/277 (6%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           S+V  Y   G    A +LF  M +R++VS   +++ Y K   +  AR +F+ M E++VV 
Sbjct: 53  SIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVS 112

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W  M+ GY Q G+  EA  LF RM     E NEV+   +       G ++  R ++  + 
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRM----PERNEVSWTVMFGGLIDDGRIDKARKLYDMMP 168

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                  +V   T +I    + G + +ARL+FD + +++VV W +MI GY  +     A 
Sbjct: 169 VK-----DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVAR 223

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
           +LF  M     + +++++  +L     +G + +   FF  M     ++P +     +V  
Sbjct: 224 KLFEVMP----EKTEVSWTSMLLGYTLSGRIEDAEEFFEVM----PMKPVIACNAMIVG- 274

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
               G++ +A + V D+  + D+  W  ++ A    G
Sbjct: 275 FGEVGEISKARR-VFDLMEDRDNATWRGMIKAYERKG 310



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           I+  S+ G + +AR  FD +  K +  WNS++ GY  +G  K+A QLF+EM    +    
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           +++ GL+S      ++ E R  F  M      E  V  +  MV    + G V EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIVEARNVFELMP-----ERNVVSWTAMVKGYMQEGMVGEAESLFW 134

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            M  E + V W  + G     G I    K+ + +  +++  S   +
Sbjct: 135 RMP-ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMI 179


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/482 (46%), Positives = 301/482 (62%), Gaps = 27/482 (5%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEV 57
           +K  LD+D++V  +L+ +Y     V  A  +F  M +R +VS     T +L  YAK G +
Sbjct: 186 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHL 245

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             AR LF+ + +K VV W  MI G  +     E   LF RM  E + PNE+T +      
Sbjct: 246 GLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML------ 299

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
                            N   ++V+  + TAL++MY+KCG +  A  +F     +D+ +W
Sbjct: 300 -----------------NKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 342

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N++I G+AMHG+G++AL +F EM R  +KP+DITFIGLL AC+HAGLV EG++ F  M  
Sbjct: 343 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 402

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            + + P++EHYGCMV+LL RAG ++EA++++  M I+P++++WG L+ ACRLH N  LGE
Sbjct: 403 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 462

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L+     N G  VL+SNIYAA   W   A VR  MK  G++KEPG S IE++  V
Sbjct: 463 LAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 522

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFL GD  HP+ + I  ML E+   L   GYVP T  VL +I E++K+ +L  HSEKLA
Sbjct: 523 HEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLA 582

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGLIST P T I+IVKNLRVC DCHA  KL+SK  GR I++RDRNRFHHF  G CSCG
Sbjct: 583 MAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCG 642

Query: 478 DY 479
           DY
Sbjct: 643 DY 644



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 114/233 (48%), Gaps = 22/233 (9%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN +I  Y +      AL ++ ++     E +   A +VL ACGQ+   + G+ IH ++ 
Sbjct: 127 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 186

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW----NSMIVGYAMHGFG 190
             + +  +V VG AL+ MY +C  ++ ARLVFD++ ++DVV W     +++  YA  G  
Sbjct: 187 -KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHL 245

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG- 249
             A QLFN +     + + +++  +++ C  +  + EG + F  M++E     ++     
Sbjct: 246 GLARQLFNGLT----QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNK 301

Query: 250 -----------CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                       +V++ ++ G +  A +L ++  I  D  +W  ++    +HG
Sbjct: 302 ERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMHG 353


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           ++V    RGGD+    +LF  MP R+L+S   ML  Y K GE+  AR +F +M  KD V 
Sbjct: 177 AMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVS 236

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W+ MI G+A +G   EA   FR +  + + PNE +   VLSAC Q GALE G+ +H +IE
Sbjct: 237 WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIE 296

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDA 193
            S  +   V V  AL++ YSKCG++  A+LVF+R+ N++++V W SM+   AMHG G++A
Sbjct: 297 KS-GLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEA 355

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           + +F++M    ++P +I FI LL AC+HAGLV +G  +F+ MK  Y IEP +EHYGCMV+
Sbjct: 356 IGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVD 415

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           L  RAGQ+++AY+ V  M I   +++W TLLGAC +HG++ L E++ E L   +  NS  
Sbjct: 416 LYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSD 475

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           +VLLSN YA  G W   A VR  M E+ + K PG S IE+   ++ FLAG  ++  ++E 
Sbjct: 476 HVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEA 535

Query: 374 YMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           Y  L+EI   L+ E GYVP+   VLHDI E++K+ S+ VHSEKLAVAFG+     G +I+
Sbjct: 536 YKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIR 595

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IVKNLR+C DCHAV KLIS+    +I++RDR+RFH F +G CSC DYW
Sbjct: 596 IVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/474 (43%), Positives = 323/474 (68%), Gaps = 8/474 (1%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGEVAAARV 62
           + D +  TS++   A    V++ +K+ A + ++    +L    +++  Y K G +  AR 
Sbjct: 89  NPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARH 148

Query: 63  LFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQ 119
           LFD+M   +++VVCWN MI GYAQ+   ++A+ +FR M     V PN+VT V+VL AC  
Sbjct: 149 LFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAH 208

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G+WI  +I + R + + + +G AL +MY+KCG + +AR VF+++ ++DV+ W+ 
Sbjct: 209 LGALDLGKWIDGFI-SRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSI 267

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I G AM+G   +A   F EM     KP+D+ F+GLL+AC HAGLV +G   FNTM  EY
Sbjct: 268 IICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEY 327

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            + PKVEHYGC+V+LLSRAG++++A  ++  M ++P+ ++WG LLG CR++ +   G+++
Sbjct: 328 GVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRV 387

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++++  +  +SG+YV L+N+Y+++G  D  A+ R  M+E GV K PGCS IE+ N VHE
Sbjct: 388 VQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHE 447

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F  GDL HP+S +IY M+ E+   +K  GY P+T +V+H I E++K+++L +HSEKLA+A
Sbjct: 448 FFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIA 507

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           FGLIST  GT+I++VKNLR+C DCH   K+IS    R+I++RDR+RFHHF +G 
Sbjct: 508 FGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/449 (48%), Positives = 306/449 (68%), Gaps = 13/449 (2%)

Query: 25  DVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           DV   EK+ +   +    SL     T++  YA  G   +A  LF+ M E+++V WN +I+
Sbjct: 10  DVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVIN 69

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GYA +G  NEAL LFR M    VEP+  T V++LSAC ++GAL  GR  H Y+     +K
Sbjct: 70  GYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM-----VK 124

Query: 141 V----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           V    N+  G AL+++Y+KCGS++ A  VFD + +K VV W S+IVG A++GFGK+AL+L
Sbjct: 125 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 184

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F E+ R  L PS+ITF+G+L AC+H G+V+EG  +F  MK+EY I PK+EHYGCMV+LL 
Sbjct: 185 FKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLG 244

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           RAG V++A++ + +M ++P++V+W TLLGAC +HG++ALGE     L+     +SG YVL
Sbjct: 245 RAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVL 304

Query: 317 LSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMM 376
           LSN+YA+   W  V +VR  M  +GV+K PG S +EL N++HEF+ GD  HP+++EIY+ 
Sbjct: 305 LSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVK 364

Query: 377 LEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKN 436
           L EI   LK EGYVP    VL DI E++K+ +L  HSEK+A+AF LI+T  G  I++VKN
Sbjct: 365 LAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKN 424

Query: 437 LRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           LRVC DCH   KLISK   R+I++RDR+R
Sbjct: 425 LRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  LD +L+   +L+DLYA+ G +  A K+F  M ++S+VS T+++             
Sbjct: 123 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIV------------ 170

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              G A +G   EAL LF+ +  + + P+E+T V VL AC   G
Sbjct: 171 -------------------GLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G      ++    I   ++    ++++  + G +K A   + +     + VVW ++
Sbjct: 212 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 271

Query: 181 IVGYAMHG 188
           +    +HG
Sbjct: 272 LGACTIHG 279


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/440 (46%), Positives = 294/440 (66%), Gaps = 8/440 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T Y +  ++ +AR  FD M EK +  WN MI GYAQ+GL   A+ LF++M A  V 
Sbjct: 361 TALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVR 420

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN +T  + LSAC Q+GAL  G+W+H  I N + +++NV V TALI+MY KCGS+ +AR 
Sbjct: 421 PNPLTISSALSACAQLGALSLGKWVHKIIANEK-LELNVYVMTALIDMYVKCGSIAEARC 479

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +++K+VV WN MI GY +HG G +AL+L+ +M    L P+  TF+ +L AC+H GL
Sbjct: 480 IFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGL 539

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV----LW 280
           V EG   F +M  +Y I P +EH  CMV+LL RAGQ++EA++L+ +    P S     +W
Sbjct: 540 VKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEF---PKSAVGPGIW 596

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGAC +H +  L +  ++ L      N+G YVLLSN+Y +   +   A VR   K +
Sbjct: 597 GALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSR 656

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            + K PGC+ IE+ ++ H F+AGD  HP+S  IY+ LE++   +   GY P T+  L+D+
Sbjct: 657 KLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDV 716

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K++ ++VHSEKLA+AFGL++T+PGT I+I+KNLRVC DCH   K+ISK T R I++
Sbjct: 717 EEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVV 776

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD +RFHHF +G CSCGDYW
Sbjct: 777 RDASRFHHFRDGVCSCGDYW 796



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 156/307 (50%), Gaps = 9/307 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T +++ YAK G++  AR LFD ME  D+V +N +I GY+ +G+   ++ LF+ ++   +
Sbjct: 259 VTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T VA++      G       +H+++  +  +  N  V TAL  +Y +   +  AR
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKA-GLDANAPVSTALTTLYCRFNDMDSAR 377

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             FD + +K +  WN+MI GYA +G  + A+ LF +M  + ++P+ +T    LSACA  G
Sbjct: 378 RAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLG 437

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+     + +E  +E  V     ++++  + G + EA + + D     + V W  +
Sbjct: 438 ALSLGKWVHKIIANE-KLELNVYVMTALIDMYVKCGSIAEA-RCIFDSMDNKNVVSWNVM 495

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW---DGVARVRTLMKEK 340
           +    LHG  A   K+ + ++  +L  + +   LS +YA        +G    R++  + 
Sbjct: 496 ISGYGLHGQGAEALKLYKDMMDAHLHPTSS-TFLSVLYACSHGGLVKEGTTVFRSMTSDY 554

Query: 341 GVQKEPG 347
           G+   PG
Sbjct: 555 GIT--PG 559



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 138/288 (47%), Gaps = 49/288 (17%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACG 118
           AR +FD +   D V WN ++ G +     +EAL  F RM  A  V P+  T  +VL A  
Sbjct: 177 ARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAA 232

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           ++     GR +H++ E    +  +  V T LI++Y+KCG ++ AR +FDR+   D+V +N
Sbjct: 233 EVANTTMGRCVHAFGEKC-GLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYN 291

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL-----------LSACAHAGLVNE 227
           ++I GY+++G    +++LF E+  + L+PS  T + L           L+ C HA +V  
Sbjct: 292 ALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKA 351

Query: 228 G------------------------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           G                        RR F+ M      E  +E +  M++  ++ G  E 
Sbjct: 352 GLDANAPVSTALTTLYCRFNDMDSARRAFDAMP-----EKTMESWNAMISGYAQNGLTEM 406

Query: 264 AYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           A  L   M+   + P+ +   + L AC   G ++LG+ + + + ++ L
Sbjct: 407 AVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKL 454



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 10/179 (5%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++  Y K G +A AR +FD M+ K+VV WNVMI GY  HG   EAL L++ M+   +
Sbjct: 461 MTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHL 520

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P   T ++VL AC   G ++ G  +   + +   I   ++  T ++++  + G LK+A 
Sbjct: 521 HPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEA- 579

Query: 164 LVFDRVND--KDVV---VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             F+ +++  K  V   +W +++    +H  G D  +L ++     L+P +  +  LLS
Sbjct: 580 --FELISEFPKSAVGPGIWGALLGACMVHKDG-DLAKLASQKL-FELEPENTGYYVLLS 634



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI- 203
           V +AL  +Y       DAR VFD V   D V+WN+++ G +    G +AL+ F  M    
Sbjct: 160 VASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAG 215

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            ++P   T   +L A A       G R  +   ++  +         +++L ++ G +E 
Sbjct: 216 SVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMEC 274

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYA 322
           A  L   M+  PD V +  L+    ++G +    ++ + L+   L  +S T V L  +++
Sbjct: 275 ARHLFDRME-GPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHS 333

Query: 323 AIGN 326
             G+
Sbjct: 334 PFGH 337


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/473 (45%), Positives = 299/473 (63%), Gaps = 3/473 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L ++ +++D+Y + G +  A+ LF  M ++ +VS TTML  +AK G    A  +FD M  
Sbjct: 309 LILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPH 368

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           K    WN +I  Y Q+G    AL LF  M L++  +P+EVT +  L A  Q+GA++ G W
Sbjct: 369 KWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHW 428

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH YI+   +I +N  + T+L++MY+KCG+L  A  VF  V  KDV VW++MI   AM+G
Sbjct: 429 IHVYIKK-HDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYG 487

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            GK AL LF+ M    +KP+ +TF  +L AC HAGLVNEG + F  M+  Y I P+++HY
Sbjct: 488 QGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHY 547

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            C+V++  RAG +E+A   +  M I P + +WG LLGAC  HGN+ L E   + L+    
Sbjct: 548 VCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEP 607

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N G +VLLSNIYA  G+W+ V+ +R LM++  V+KEP CSSI+++  VHEFL GD  HP
Sbjct: 608 CNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHP 667

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQP 427
            S++IY  L+EI+   K  GY P    +L    E    + SL VHSEKLA+AFGLIST  
Sbjct: 668 FSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTAS 727

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              I+IVKN+R+C DCHA  KL+S+   R I++RDR RFHHF  G CSC DYW
Sbjct: 728 SQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 164/345 (47%), Gaps = 67/345 (19%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G VL    + A++    L  L +++  Y   G    A  +F +M  KDVV WN MI+ +A
Sbjct: 192 GSVLHGMVIKASL-SSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFA 250

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
             GL ++AL+LF+ M  + V+PN +T V+VLSAC +   LE GRWI SYIEN+     ++
Sbjct: 251 LGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENN-GFTEHL 309

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVV---------------------------- 175
            +  A+++MY KCG + DA+ +F+++++KD+V                            
Sbjct: 310 ILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHK 369

Query: 176 ---VWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGR-- 229
               WN++I  Y  +G  + AL LF+EM   +  KP ++T I  L A A  G ++ G   
Sbjct: 370 WTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWI 429

Query: 230 -------------RFFNTMKDEY--------------AIEPK-VEHYGCMVNLLSRAGQV 261
                            ++ D Y              A+E K V  +  M+  L+  GQ 
Sbjct: 430 HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQG 489

Query: 262 EEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
           + A  L   M    I+P++V +  +L AC   G +  GE++ E +
Sbjct: 490 KAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQM 534



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 10/287 (3%)

Query: 13  STSLVDLYARGGDVLSAEKLFATMPQRSLV----SLTTMLTCYAKQGE--VAAARVLFDD 66
           ST++++   +  + +  +++ A M + S      + + +LT YA      +  A+ +F+ 
Sbjct: 72  STNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQ 131

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALES 125
           + + ++ CWN +I GYA      ++ ++F  ML    E PN+ T   +  A  ++  L  
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G  +H  +  + ++  ++ +  +LIN Y   G+   A  VF  +  KDVV WN+MI  +A
Sbjct: 192 GSVLHGMVIKA-SLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFA 250

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           + G    AL LF EM    +KP+ IT + +LSACA    +  GR   + +++    E  +
Sbjct: 251 LGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLI 310

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
            +   M+++  + G + +A  L   M  E D V W T+L      GN
Sbjct: 311 LN-NAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLDGHAKLGN 355



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 32/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ + +++TSL+D+YA+ G++  A ++F                             
Sbjct: 435 KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHA--------------------------- 467

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
               +E KDV  W+ MI   A +G    AL LF  ML   ++PN VT   +L AC   G 
Sbjct: 468 ----VERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGL 523

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMI 181
           +  G  +   +E    I   +Q    +++++ + G L+ A    +++       VW +++
Sbjct: 524 VNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALL 583

Query: 182 VGYAMHG 188
              + HG
Sbjct: 584 GACSRHG 590


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 297/468 (63%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  Y + G V  A +LF  MP+  + +   M+  + ++G V AA+ +F+ M E+D  
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDG 299

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MI  Y Q+    EAL  FR ML   V PN  + +++L+ C  +  L+ GR +H+ +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
               +  ++V   +ALI MY KCG+L  A+ VF     KD+V+WNSMI GYA HG G+ A
Sbjct: 360 LRC-SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L +F++M    + P  IT+IG L+AC++ G V EGR  FN+M    +I P  EHY CMV+
Sbjct: 419 LGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVD 478

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL R+G VEEA+ L+ +M +EPD+V+WG L+GACR+H N  + E  A+ L+     N+G 
Sbjct: 479 LLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGP 538

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD-LRHPKSKE 372
           YVLLS+IY ++G W+  +++R  +  + + K PGCS IE   +VH F +GD L HP+   
Sbjct: 539 YVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAA 598

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I  +LE+++G L   GY      VLHDI E+QK +SL  HSE+ AVA+GL+    G  I+
Sbjct: 599 ILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIR 658

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCH+  KLI+K T R+I++RD NRFHHF +G CSC DYW
Sbjct: 659 VMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 42/310 (13%)

Query: 23  GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82
            G V  A +LF  MP R +V+ T ML+ Y + G +  AR LFD+M +++VV W  MI GY
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGY 215

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           AQ+G  N A  LF  M     E NEV+  A+L    Q G +E    + + +         
Sbjct: 216 AQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEH-----P 266

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V    A++  + + G +  A+ VF+++ ++D   W++MI  Y  + F  +AL  F EM  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM------KDEYAI--------------- 241
             ++P+  + I +L+ CA   +++ GR     M       D +A+               
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 242 --------EPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMKI---EPDSVLWGTLLGACRL 289
                   EPK +  +  M+   ++ G  E+A  +  DM++    PD + +   L AC  
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 290 HGNIALGEKI 299
            G +  G +I
Sbjct: 447 TGKVKEGREI 456



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 114/257 (44%), Gaps = 20/257 (7%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           AR G++  A   F  MP R+  S   +L  Y +     AA  LF  M  +D+  +N +I 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 81  GYA--QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           G +  +  L + A  L     +    P+ V+  ++L    + G L     +   +    +
Sbjct: 88  GLSLRRQTLPDAAAAL----ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
           +   V +G  L       G + +AR +FD + D+DVV W +M+ GY   G   +A  LF+
Sbjct: 144 VSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           EM     K + +++  ++S  A  G VN  R+ F  M +   +      +  M+    +A
Sbjct: 199 EMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQA 249

Query: 259 GQVEEAYKLVMDMKIEP 275
           G VE+A +L   M   P
Sbjct: 250 GHVEDAAELFNAMPEHP 266



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 89/187 (47%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++ S D D++  ++L+ +Y + G++  A+++F T   + +V   +M+T Y          
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY---------- 409

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHGL  +AL +F  M    + P+ +T +  L+AC   G
Sbjct: 410 ---------------------AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTG 448

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ GR I + +  + +I+   +  + ++++  + G +++A  L+ +   + D V+W ++
Sbjct: 449 KVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGAL 508

Query: 181 IVGYAMH 187
           +    MH
Sbjct: 509 MGACRMH 515


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/436 (47%), Positives = 283/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +++ Y+    +  A  +F ++  +DVV WN +I   AQ G +  AL L R M    VE
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT V+ L AC ++ AL  G+ IH +I        N  +  +LI+MY +CGS++ +R 
Sbjct: 598 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNF-ILNSLIDMYGRCGSIQKSRR 656

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  +D+V WN MI  Y MHGFG DA+ LF +   + LKP+ ITF  LLSAC+H+GL
Sbjct: 657 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGL 716

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG ++F  MK EYA++P VE Y CMV+LLSRAGQ  E  + +  M  EP++ +WG+LL
Sbjct: 717 IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H N  L E  A YL      +SG YVL++NIY+A G W+  A++R LMKE+GV K
Sbjct: 777 GACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTK 836

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCS IE+  K+H F+ GD  HP  ++I   +E +   +K  GYVP T  VL D+ E +
Sbjct: 837 PPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDE 896

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ SL  HSEK+A+AFGLIST  GT ++I+KNLRVC DCH+  K ISK   R I+MRD  
Sbjct: 897 KEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNY 956

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHFV+G CSCGDYW
Sbjct: 957 RFHHFVDGVCSCGDYW 972



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 157/294 (53%), Gaps = 15/294 (5%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD DL V  SLVD YA+   V  A + F  + Q  LVS   ML  YA +G    A  L  
Sbjct: 394 LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLS 453

Query: 66  DME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +M+    E D++ WN ++ G+ Q+G    AL  F+RM +  ++PN  T    L+ACGQ+ 
Sbjct: 454 EMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVR 513

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ G+ IH Y+  + +I+++  VG+ALI+MYS C SL+ A  VF  ++ +DVVVWNS+I
Sbjct: 514 NLKLGKEIHGYVLRN-HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              A  G   +AL L  EM    ++ + +T +  L AC+    + +G+        ++ I
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEI-----HQFII 627

Query: 242 EPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              ++        ++++  R G ++++ + + D+  + D V W  ++    +HG
Sbjct: 628 RCGLDTCNFILNSLIDMYGRCGSIQKSRR-IFDLMPQRDLVSWNVMISVYGMHG 680



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 43/326 (13%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVL 63
           KD+++   +V  Y   G+   A K  + M    +    V+   +++ YA+ G+   A   
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKY 313

Query: 64  FDDME-----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           F +M      + +VV W  +I G  Q+G   EAL +FR+M+ E V+PN +T  + +SAC 
Sbjct: 314 FLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACT 373

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +  L  GR IH Y      +  ++ VG +L++ Y+KC S++ AR  F  +   D+V WN
Sbjct: 374 NLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWN 433

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +M+ GYA+ G  ++A++L +EM    ++P  IT+ GL++     G       FF  M   
Sbjct: 434 AMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH-- 491

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
                                           M ++P++      L AC    N+ LG++
Sbjct: 492 -------------------------------SMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 299 IAEYLISQNLA-NSGTYVLLSNIYAA 323
           I  Y++  ++  ++G    L ++Y+ 
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSG 546



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 4/263 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  Y + G V  AR +FD M E++V  W  +++ Y   G   E + LF  M+ E V 
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 187

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+      V  AC ++     G+ ++ Y+  S   + N  V  ++++M+ KCG +  AR 
Sbjct: 188 PDHFVFPKVFKACSELKNYRVGKDVYDYML-SIGFEGNSCVKGSILDMFIKCGRMDIARR 246

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F+ +  KDV +WN M+ GY   G  K AL+  ++M    +KP  +T+  ++S  A +G 
Sbjct: 247 FFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQ 306

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWG 281
             E  ++F  M      +P V  +  ++    + G   EA  +   M +E   P+S+   
Sbjct: 307 FEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIA 366

Query: 282 TLLGACRLHGNIALGEKIAEYLI 304
           + + AC     +  G +I  Y I
Sbjct: 367 SAVSACTNLSLLRHGREIHGYCI 389



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 140/346 (40%), Gaps = 73/346 (21%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L  + K G +  AR  F+++E KDV  WN+M+ GY   G   +AL     M    V+P
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           ++VT  A++S   Q G  E                            + + G LKD +  
Sbjct: 290 DQVTWNAIISGYAQSGQFEEAS-----------------------KYFLEMGGLKDFK-- 324

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
                  +VV W ++I G   +G+  +AL +F +M    +KP+ IT    +SAC +  L+
Sbjct: 325 ------PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLL 378

Query: 226 NEGRRFF----------------NTMKDEYAIEPKVE---------------HYGCMVNL 254
             GR                   N++ D YA    VE                +  M+  
Sbjct: 379 RHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAG 438

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
            +  G  EEA +L+ +MK   IEPD + W  L+     +G+   G+   E+   Q + + 
Sbjct: 439 YALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD---GKAALEFF--QRMHSM 493

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           G     + I  A+       +VR L   K +      + IELS  V
Sbjct: 494 GMDPNTTTISGALA---ACGQVRNLKLGKEIHGYVLRNHIELSTGV 536



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 44/243 (18%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  Y + G +  +R +FD M ++D+V WNVMI  Y  HG   +A+ LF++     +
Sbjct: 638 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGL 697

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +PN +T   +LSAC   G +E G      ++    +   V+    ++++ S+ G   +  
Sbjct: 698 KPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 164 LVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
              +++  + +  VW S++                   CRI   P               
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGA-----------------CRIHCNPD-------------- 786

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVE-HYGCMVNLLSRAGQVEEAYKLVMDMK----IEPDS 277
            L     R+       + +EP+   +Y  M N+ S AG+ E+A K+   MK     +P  
Sbjct: 787 -LAEYAARYL------FELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPG 839

Query: 278 VLW 280
             W
Sbjct: 840 CSW 842



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 114/261 (43%), Gaps = 51/261 (19%)

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAV--AVLSACGQIGALESGRWIHSYIENSRNIKV 141
           ++G+ N A +L   M  +   P+E   +  ++L  C ++  L  G  +H+ +     + V
Sbjct: 66  RNGVLNNAAMLLSSM--DLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLV-VNGVDV 122

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
              +G+ L+ +Y + G ++DAR +FD++++++V  W +++  Y   G  ++ ++LF  M 
Sbjct: 123 CEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMV 182

Query: 202 RIRLKPSDITFIGLLSACAH-----------------------------------AGLVN 226
              ++P    F  +  AC+                                     G ++
Sbjct: 183 NEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMD 242

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
             RRFF  ++ +      V  +  MV+  +  G+ ++A K + DMK   ++PD V W  +
Sbjct: 243 IARRFFEEIEFK-----DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAI 297

Query: 284 LGACRLHGNIALGEKIAEYLI 304
           +      G     E+ ++Y +
Sbjct: 298 ISGYAQSGQF---EEASKYFL 315


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/469 (43%), Positives = 306/469 (65%), Gaps = 3/469 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TS++  Y + G +  AE+LF  MP + +++   M++   ++GE+A AR +FD M+E++  
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  +I  + ++G   EAL LF  M  + V P   T +++LS C  + +L  G+ +H+ +
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
              +   V+V V + L+ MY KCG L  ++L+FDR   KD+++WNS+I GYA HG G++A
Sbjct: 358 VRCQ-FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEA 416

Query: 194 LQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           L++F EM      KP+++TF+  LSAC++AG+V EG + + +M+  + ++P   HY CMV
Sbjct: 417 LKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMV 476

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           ++L RAG+  EA +++  M +EPD+ +WG+LLGACR H  + + E  A+ LI     NSG
Sbjct: 477 DMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSG 536

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSK 371
           TY+LLSN+YA+ G W  VA +R LMK + V+K PGCS  E+ NKVH F  G +  HP+ +
Sbjct: 537 TYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQE 596

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
            I  +L+E++G L+  GY P     LHD+ E++K NSL+ HSE+LAVA+ L+    G  I
Sbjct: 597 SILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPI 656

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +++KNLRVC DCH   K+ISK   R+I++RD NRFHHF NG CSC DYW
Sbjct: 657 RVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 131/256 (51%), Gaps = 19/256 (7%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A KLF  MP R+++S   +++ Y K GE+  AR +FD M E++VV W  ++ GY  +G  
Sbjct: 67  ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           + A  LF +M     E N+V+   +L    Q G ++    ++  I +  NI       T+
Sbjct: 127 DVAESLFWKM----PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNI-----ARTS 177

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           +I+   K G + +AR +FD ++++ V+ W +M+ GY  +    DA ++F+ M     + +
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKT 233

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           ++++  +L      G + +    F  M     ++P +     M++ L + G++ +A ++ 
Sbjct: 234 EVSWTSMLMGYVQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVF 288

Query: 269 MDMKIEPDSVLWGTLL 284
             MK E +   W T++
Sbjct: 289 DSMK-ERNDASWQTVI 303



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 145/301 (48%), Gaps = 21/301 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D+++     LV  Y + G++  A K+F  MP+R++VS T ++  Y   G+V  A  LF  
Sbjct: 76  DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M EK+ V W VM+ G+ Q G  ++A  L+  M+ +K   + +   +++    + G ++  
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK---DNIARTSMIHGLCKEGRVDEA 191

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R I   +        +V   T ++  Y +   + DAR +FD + +K  V W SM++GY  
Sbjct: 192 REIFDEMSER-----SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQ 246

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G  +DA +LF  M    +KP  I    ++S     G + + RR F++MK     E    
Sbjct: 247 NGRIEDAEELFEVM---PVKPV-IACNAMISGLGQKGEIAKARRVFDSMK-----ERNDA 297

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            +  ++ +  R G   EA  L + M+   + P      ++L  C    ++  G+++   L
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357

Query: 304 I 304
           +
Sbjct: 358 V 358



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 28/312 (8%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
           +T  ++ G++  AR LFD  + K +  WN M+ GY  + +  +A    R++  E  + N 
Sbjct: 24  ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDA----RKLFDEMPDRNI 79

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
           ++   ++S   + G ++  R +   +        NV   TAL+  Y   G +  A  +F 
Sbjct: 80  ISWNGLVSGYMKNGEIDEARKVFDLMPER-----NVVSWTALVKGYVHNGKVDVAESLFW 134

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
           ++ +K+ V W  M++G+   G   DA +L+ EM   +    +I    ++      G V+E
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK---DNIARTSMIHGLCKEGRVDE 190

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
            R  F+ M +   I      +  MV    +  +V++A K + D+  E   V W ++L   
Sbjct: 191 AREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARK-IFDVMPEKTEVSWTSMLMGY 244

Query: 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
             +G I   E++ E +  + +      +  + + + +G    +A+ R +       KE  
Sbjct: 245 VQNGRIEDAEELFEVMPVKPV------IACNAMISGLGQKGEIAKARRVFDS---MKERN 295

Query: 348 CSSIELSNKVHE 359
            +S +   K+HE
Sbjct: 296 DASWQTVIKIHE 307


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/476 (44%), Positives = 315/476 (66%), Gaps = 5/476 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLF 64
           + +V  S +   A G   + A  LF  + Q  +     + +++L       +++  R+L 
Sbjct: 125 ETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 184

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
             +E+     W  MI GY Q G A EA+ LF +M    V+ NEVT VAVL+AC  +GAL+
Sbjct: 185 GVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALD 244

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G  IH Y  N    K NV++   LI+MY KCG L++A  VF+ + ++ VV W++MI G 
Sbjct: 245 LGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGL 303

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           AMHG  ++AL+LF++M ++ ++P+ +TFIGLL AC+H GL++EGRRFF +M  +Y I P+
Sbjct: 304 AMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQ 363

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +EHYGCMV+LLSRAG + EA++ +++M ++P+ V+WG LLGACR+H N+ + E+  ++L+
Sbjct: 364 IEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLL 423

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
             +  N G YV+LSNIYA  G W+  ARVR  MK++ V+K PG SSI +   VHEF+AG+
Sbjct: 424 ELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGE 483

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP +++I+   EE+   ++ +GYVP T +VL DI E +K   +  HSEKLA+ FGL++
Sbjct: 484 ESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMN 543

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T   T I+I+KNLR+C DCH+ FKLIS    R+I++RDRNRFH F + +CSC DYW
Sbjct: 544 TPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 35/237 (14%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +    +++ +S +L+D+Y + G +  A K+F  M +R++VS + M+   A  G       
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGR------ 308

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                    A EAL LF  M    +EPN VT + +L AC  +G 
Sbjct: 309 -------------------------AEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGL 343

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           +  GR   + +     I   ++    ++++ S+ G L +A   + +     + VVW +++
Sbjct: 344 ISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALL 403

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
               +H   + A +    +  + L P +D  ++ L +  A AG   +  R    MKD
Sbjct: 404 GACRVHKNVEMAEEAIKHL--LELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKD 458


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/483 (45%), Positives = 303/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEV 57
           ++  L  D +    ++   +R GD+ S   +   M +   V      T+++  YAK G +
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSM 254

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             AR +FD M EKDVVCW+ +I GYA +G+  EAL +F  M  E V P+    V V SAC
Sbjct: 255 EEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
            ++GALE G W    ++    +  N  +GTALI+ Y+KCGS+  A+ VF  +  KD VV+
Sbjct: 315 SRLGALELGNWARGLMDGDEFLS-NPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVF 373

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N++I G AM G    A  +F +M ++ ++P   TF+GLL  C HAGLV++G R+F+ M  
Sbjct: 374 NAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSS 433

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +++ P +EHYGCMV+L +RAG + EA  L+  M +E +S++WG LLG CRLH +  L E
Sbjct: 434 VFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAE 493

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
            + + LI     NSG YVLLSNIY+A   WD   ++R+ + +KG+QK PGCS +E+   V
Sbjct: 494 HVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVV 553

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFL GD  HP S +IY  LE +   L+  GY P T+ VL D+ E++K+  L  HSEKLA
Sbjct: 554 HEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLA 613

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAF LIST     I++VKNLRVC DCH   KL+SK TGR+I++RD NRFHHF  G+CSC 
Sbjct: 614 VAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCR 673

Query: 478 DYW 480
           DYW
Sbjct: 674 DYW 676



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 150/255 (58%), Gaps = 6/255 (2%)

Query: 42  VSLTTMLTC-YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           V + T L C Y+K G +  AR +FD++ EK+VV W  +I GY + G   EAL LFR +L 
Sbjct: 137 VFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLE 196

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             + P+  T V +L AC ++G L SGRWI  Y+  S ++  NV V T+L++MY+KCGS++
Sbjct: 197 MGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVG-NVFVATSLVDMYAKCGSME 255

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +AR VFD + +KDVV W+++I GYA +G  K+AL +F EM R  ++P     +G+ SAC+
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315

Query: 221 HAGLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
             G +  G      M  DE+   P +     +++  ++ G V +A ++   M+   D V+
Sbjct: 316 RLGALELGNWARGLMDGDEFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGMR-RKDCVV 372

Query: 280 WGTLLGACRLHGNIA 294
           +  ++    + G++ 
Sbjct: 373 FNAVISGLAMCGHVG 387



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A V+F      ++  +N +I G   +    +A+ ++  M      P+  T   VL AC +
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113

Query: 120 IGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           +      G  +HS +  +     +V V T L+ +YSK G L DAR VFD + +K+VV W 
Sbjct: 114 LPHYFHVGLSLHSLVIKT-GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWT 172

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           ++I GY   G   +AL LF  +  + L+P   T + +L AC+  G +  GR     M++ 
Sbjct: 173 AIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRES 232

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++   V     +V++ ++ G +EEA + V D  +E D V W  L+
Sbjct: 233 GSV-GNVFVATSLVDMYAKCGSMEEARR-VFDGMVEKDVVCWSALI 276


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/482 (46%), Positives = 311/482 (64%), Gaps = 36/482 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+ +L+VS +L+++YA+ G +  A+K+F  +                        
Sbjct: 121 VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI----------------------- 157

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQ 119
                    KDVV WN +I GYAQ+GLA+EA+ ++  M   E++ PN+ T V++L A   
Sbjct: 158 ---------KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSH 208

Query: 120 IGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           +GAL+ G  IH   I+N   +  +V VGT LI+MY KCG L DA  +F +V  K+ V WN
Sbjct: 209 VGALQQGMRIHGQVIKNC--LYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWN 266

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +MI  Y +HG G+ AL+LF EM   R+KP  ITF+ LLSAC+H+GLV++ +  FN M++E
Sbjct: 267 AMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEE 326

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           Y I+P ++HYGCMV+L  RAG++E A+  +  M I+PD+  WG LL ACR+HGNI LG+ 
Sbjct: 327 YGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKH 386

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
            +E L   +  N G YVLLSNIYA +G W+GV  VR+L +++G++K PG SSI L+NKV 
Sbjct: 387 ASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVD 446

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
            F  G+  HPK +EIY  L ++   +K  GYVP    VL D+ E +K++ L  HSE+LA+
Sbjct: 447 VFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAI 506

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           A+G+IST P T I+I KNLRVC DCH V K IS  T R+I++RD +RFHHF  GTCSCGD
Sbjct: 507 AYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGD 566

Query: 479 YW 480
           YW
Sbjct: 567 YW 568



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 151/283 (53%), Gaps = 12/283 (4%)

Query: 24  GDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           GD+L  +K+   +     +  +    +++  Y++ G V  AR LFDDM  +D   WN MI
Sbjct: 8   GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMI 67

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GY Q+G A EAL +   M  E V+ + +T  +VL  C Q+G + SG+ IH Y+     +
Sbjct: 68  SGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYV-IKHGL 126

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           +  + V  ALINMY+K GSL  A+ VF  +  KDVV WN++I GYA +G   +A++++  
Sbjct: 127 EFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLL 185

Query: 200 MCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           M     + P+  T++ +L A +H G + +G R    +     +   V    C++++  + 
Sbjct: 186 MEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN-CLYSDVFVGTCLIDMYGKC 244

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           G++++A  L   +    +SV W  ++    +HG+   GEK  E
Sbjct: 245 GKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGD---GEKALE 283


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/482 (43%), Positives = 315/482 (65%), Gaps = 4/482 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D++   +L+ +YA  G++  A +LF  +P+R  VS   M+  Y K G+V  A 
Sbjct: 115 IKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAY 174

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F DM  K+VV W  +I G  + G + EAL L   M     E + V   ++L+AC  +G
Sbjct: 175 GVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLG 234

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNS 179
           AL+ GRW+H Y+ N+  + V+  +G AL+NMY KCG +++A  VF ++  N KDV +W +
Sbjct: 235 ALDQGRWLHFYVLNN-GVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G+A+HG G +AL+ FN M R  ++P+ ITF  +L AC++ GLV EG+  F +MK  Y
Sbjct: 294 MIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFY 353

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            + P +EHYGCMV+LL R+G+++EA +L+  M ++P +V+WG LL AC +H +  LG ++
Sbjct: 354 NVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQV 413

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
             +L+  +  +SG Y+ L+ I AA G W   A VR  MK  GV   PG SS+ L+  VHE
Sbjct: 414 GAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHE 473

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKA-EGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           FLAG   HP+ ++I + L++I   L+  EGY P T+ +L D+  ++K+ ++  HSEKLA+
Sbjct: 474 FLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAI 533

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGLI+T+PGT+I+++KNLR+C DCH V KL+S+   R+I+MRDR RFHHF +G+CSC D
Sbjct: 534 AFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKD 593

Query: 479 YW 480
           YW
Sbjct: 594 YW 595



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 46/275 (16%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G++  A+ +F+ +   +   WN +I  Y+       A + +++ML+  V  N  T   +L
Sbjct: 36  GDLLYAQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLL 95

Query: 115 SACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVN 170
            AC  + A+     +H  +     IK+    +V    AL+++Y+ CG +  AR +FD + 
Sbjct: 96  RACRNLLAMGEALQVHGLV-----IKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIP 150

Query: 171 DKDVVVWNSMIVGYAMHGFGK-------------------------------DALQLFNE 199
           ++D V WN MI GY   G  K                               +AL L  E
Sbjct: 151 ERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYE 210

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGC-MVNLLSR 257
           M     +   +    LL+ACA+ G +++GR   F  + +   ++  +   GC +VN+  +
Sbjct: 211 MQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVI---GCALVNMYVK 267

Query: 258 AGQVEEAYKLVMDMK-IEPDSVLWGTLLGACRLHG 291
            G +EEA  +   +K  + D  +W  ++    +HG
Sbjct: 268 CGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHG 302


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/450 (46%), Positives = 309/450 (68%), Gaps = 11/450 (2%)

Query: 33  FATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           F++ P  Q SLV+       Y+K  E+  AR +FD++ E+++VCW+ M+ GYA+ G+ NE
Sbjct: 123 FSSSPYVQSSLVNF------YSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINE 176

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL++FR M    +EP+EV+ V VLSAC  +GAL+ G+W+H+YI+  R I V++++ TALI
Sbjct: 177 ALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKK-RMIHVDLELNTALI 235

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           NMY+KCG ++ AR +FD +  KD   W+SMIVG A+HG  +DAL +F+ M   + KP+ +
Sbjct: 236 NMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHV 295

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           TFIG+LSACAH GLV++G+R++++M  E  IEP +EHYGCMV+LL R G ++EAY   + 
Sbjct: 296 TFIGILSACAHGGLVSDGKRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALI 354

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
           +   PD V+W TLL A   +  +   E +A  L+      +  Y++L+N+YA++   + V
Sbjct: 355 IP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKV 413

Query: 331 ARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390
           + VR +MKE G++  PGC+SIE+   VH F+ GD  HP+++EI   L ++   +   GY 
Sbjct: 414 SHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYK 473

Query: 391 PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLI 450
           P   +VLH + +++K+N L  HSE+LA+A+GL+ T+   +I+IVKNLRVC DCH V K+I
Sbjct: 474 PFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKII 533

Query: 451 SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           SK   R+I++RDR RFH FVNGTCSC DYW
Sbjct: 534 SKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 135/253 (53%), Gaps = 5/253 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL-ANEALVLFRRML 99
           L+S        +  G    AR +F  +    +  +N +I G     + + E + LF+ M+
Sbjct: 24  LISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMV 83

Query: 100 AEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            +    PN  T   VL AC  I ALE G+ IH+ I  S     +  V ++L+N YSKC  
Sbjct: 84  GKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRS-GFSSSPYVQSSLVNFYSKCEE 142

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  AR VFD + ++++V W++M+ GYA  G   +AL +F EM  + ++P +++ +G+LSA
Sbjct: 143 ITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSA 202

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA  G ++ G+     +K    I   +E    ++N+ ++ G +E+A ++  +M+++ DS 
Sbjct: 203 CAMVGALDIGKWVHAYIKKR-MIHVDLELNTALINMYAKCGCIEKAREIFDEMRVK-DSK 260

Query: 279 LWGTLLGACRLHG 291
            W +++    +HG
Sbjct: 261 AWSSMIVGLAIHG 273


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/434 (48%), Positives = 296/434 (68%), Gaps = 2/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +++ +   G++ +A  LF+DM E+D+V WN +I G+ QHG    A   F+ M    V+P+
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPD 608

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           ++T   +L+AC    AL  GR +H+ I  +  +  +V VGT LI+MY+KCGS+ DA LVF
Sbjct: 609 QITFTGLLNACASPEALTEGRRLHALITEAA-LDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  K+V  W SMI GYA HG GK+AL+LF +M +  +KP  ITF+G LSACAHAGL+ 
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIK 727

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG   F +MKD + IEP++EHYGCMV+L  RAG + EA + +  M+++PDS LWG LLGA
Sbjct: 728 EGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGA 786

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C++H ++ L EK+A+  +  +  + G YV+LSNIYAA G W  V ++R +M ++GV K+P
Sbjct: 787 CQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKP 846

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S IE+  +VH F + D  HP+ +EI+  L  ++  +K  GYVP T+ VLHD+ + +K+
Sbjct: 847 GQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKE 906

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           ++L  HSE+LA+A+GL+ T P T I I KNLRVC DCH   KLISK T R+I+ RD NRF
Sbjct: 907 HALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRF 966

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSCGD+W
Sbjct: 967 HHFKDGVCSCGDFW 980



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 159/323 (49%), Gaps = 35/323 (10%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  +     +++ YAK G   +A+ +FD+M +KDV  WN+++ GY QH    EA  L  +
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+ + V+P++ T V +L+AC     ++ G  + S I N+     ++ VGTALINM+ KCG
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNA-GWDTDLFVGTALINMHIKCG 254

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            + DA  VF+ +  +D++ W SMI G A H   K A  LF  M    ++P  + F+ LL 
Sbjct: 255 GVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLK 314

Query: 218 ACAHAGLVNEGRRFFNTMKD-----------------------EYAIE-------PKVEH 247
           AC H   + +G+R    MK+                       E A+E         V  
Sbjct: 315 ACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  M+   ++ G++EEA+     M    IEP+ V + ++LGAC     +  G +I + +I
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 305 SQN-LANSGTYVLLSNIYAAIGN 326
               + +      L ++YA  G+
Sbjct: 435 KAGYITDDRVRTALLSMYAKCGS 457



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 138/247 (55%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L+ YAK G +  AR +F+ + +++VV WN MI  Y QH   + A+  F+ +L E ++
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T  ++L+ C    ALE G+W+ S I  +   + ++ +  AL++M+  CG L  A  
Sbjct: 506 PDSSTFTSILNVCKSPDALELGKWVQSLIIRA-GFESDLHIRNALVSMFVNCGDLMSAMN 564

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + ++D+V WN++I G+  HG  + A   F  M    +KP  ITF GLL+ACA    
Sbjct: 565 LFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEA 624

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EGRR  + +  E A++  V     ++++ ++ G +++A+ LV     + +   W +++
Sbjct: 625 LTEGRR-LHALITEAALDCDVVVGTGLISMYTKCGSIDDAH-LVFHNLPKKNVYSWTSMI 682

Query: 285 GACRLHG 291
                HG
Sbjct: 683 TGYAQHG 689



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 177/346 (51%), Gaps = 47/346 (13%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D DL+V T+L++++ + G V  A K+F  +P+R L++ T+M+T  A+  +   A  LF  
Sbjct: 237 DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQV 296

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           MEE                               E V+P++V  V++L AC    ALE G
Sbjct: 297 MEE-------------------------------EGVQPDKVAFVSLLKACNHPEALEQG 325

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + +H+ ++    +   + VGTAL++MY+KCGS++DA  VF+ V  ++VV W +MI G+A 
Sbjct: 326 KRVHARMKEV-GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQ 384

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKV 245
           HG  ++A   FN+M    ++P+ +TF+ +L AC+    + +GR+  +  +K  Y  + +V
Sbjct: 385 HGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRV 444

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
                ++++ ++ G + +A + V +   + + V W  ++ A   H          + L+ 
Sbjct: 445 R--TALLSMYAKCGSLMDA-RNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 306 QNL-ANSGTYVLLSNIYAA-----IGNWDGVARVRTLMKEKGVQKE 345
           + +  +S T+  + N+  +     +G W     V++L+   G + +
Sbjct: 502 EGIKPDSSTFTSILNVCKSPDALELGKW-----VQSLIIRAGFESD 542



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 37/302 (12%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N  ++  ++ G  +EA+++   + +  ++ +  T  ++L  C +   L  G  IH++I+ 
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           S+ I+ ++ +   LI+MY+KCG+   A+ +FD + DKDV  WN ++ GY  H   ++A +
Sbjct: 133 SK-IQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFR 191

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM------KDEYAIEPKVE-HY 248
           L  +M +  +KP   TF+ +L+ACA A  V++G   F+ +       D +     +  H 
Sbjct: 192 LHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHI 251

Query: 249 GC-----------------------MVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGT 282
            C                       M+  L+R  Q ++A  L   M+   ++PD V + +
Sbjct: 252 KCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVS 311

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
           LL AC     +  G+++   +    L ++  YV   L ++Y   G+ +    V  L+K +
Sbjct: 312 LLKACNHPEALEQGKRVHARMKEVGL-DTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 341 GV 342
            V
Sbjct: 371 NV 372



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 118/236 (50%), Gaps = 11/236 (4%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLF 64
           D    T L++  A    +    +L A + + +L    V  T +++ Y K G +  A ++F
Sbjct: 608 DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
            ++ +K+V  W  MI GYAQHG   EAL LF +M  E V+P+ +T V  LSAC   G ++
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIK 727

Query: 125 SGRWIHSYIE-NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIV 182
            G  +H +      NI+  ++    +++++ + G L +A    +++  K D  +W +++ 
Sbjct: 728 EG--LHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLG 785

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKD 237
              +H   + A ++  +  ++ L P+D   ++ L +  A AG+  E  +    M D
Sbjct: 786 ACQVHLDVELAEKVAQK--KLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLD 839



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV----WNSMIVGYAMHGFGKDALQLF 197
           N Q   A +N  SK G L +A LV   V+   + +    ++S++     H    D  ++ 
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
           N +   +++P    +  L+S  A  G  N  ++ F+ M D+      V  +  ++    +
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK-----DVYSWNLLLGGYVQ 182

Query: 258 AGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             + EEA++L   M    ++PD   +  +L AC    N+  G ++   +++
Sbjct: 183 HRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILN 233


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/482 (42%), Positives = 309/482 (64%), Gaps = 4/482 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAA 59
           V+   D    V  +L+ +YA+ G V  A ++   + +    +++ T +L  Y K G++  
Sbjct: 267 VRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITP 326

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +F+ +++ DVV W  MI GY Q+GL N+A+ +F+ M++E   PN  T  A+LSA   
Sbjct: 327 ARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSS 386

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWN 178
           + +L  G+ IH+    S    ++  VG AL  MY+K GS+  AR VF+ +  ++D V W 
Sbjct: 387 VTSLNHGKQIHASAIRSGE-ALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWT 445

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           SMI+  A HG G++A++LF +M  + +KP  IT++G+LSAC H GLV +GR +F+ MK+ 
Sbjct: 446 SMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNV 505

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           + I+P + HY CMV+L  RAG ++EAYK V +M +EPD + WG+LL +C+++ N+ L + 
Sbjct: 506 HKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKV 565

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
            AE L+     NSG Y  L+N+Y++ G WD  A++R LMK +GV+KE G S +++ NK H
Sbjct: 566 AAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTH 625

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
            F   D  HP+  EIY M+++I   +K  G+ P T+ VLHD+  + K   L  HSEKLA+
Sbjct: 626 VFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAI 685

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFG+IST   T+++I+KNLRVC DCH   K ISK   R+I++RD  RFHHF +G+CSC D
Sbjct: 686 AFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKD 745

Query: 479 YW 480
           YW
Sbjct: 746 YW 747



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 182/377 (48%), Gaps = 49/377 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   +Y+  +L++LYA+ G  L A  LF  MP ++  S  T+L+ YAKQG++  A 
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAH 61

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD +  +D V W  +I GY Q G   +A+ +F  M+ +KV P + T   VL++C   G
Sbjct: 62  QVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------- 168
           +   G+ +HS++     +   V V  +L+NMY+K G LK A++VFDR             
Sbjct: 122 SRGIGKKVHSFVVK-LGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 169 ------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSD 209
                             ++++D+V WNSMI G   HGF  +ALQ F+ + +   LKP  
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG----CMVNLLSRAGQVEEAY 265
            +    LSACA+   ++ G++        Y +    +  G     ++++ +++G VE A 
Sbjct: 241 FSLASALSACANLEKLSFGKQIHG-----YIVRTMFDASGAVGNALISMYAKSGGVEIAR 295

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
           +++    I    V+  T L    L+G + LG+      I  +L +       + I   + 
Sbjct: 296 RIIEQSGISDLDVIAFTAL----LNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQ 351

Query: 326 NW---DGVARVRTLMKE 339
           N    D +   +T++ E
Sbjct: 352 NGLNNDAIEVFKTMVSE 368


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/437 (47%), Positives = 310/437 (70%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T +L  YAK  +VA AR +FD M  +K++V W+ M+ GY++ G+ NEAL LFR M A  V
Sbjct: 214 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 273

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+EVT V+V+SAC + GAL+ G+W+H+YI+  + I V++++ TALI+MY+KCG ++ AR
Sbjct: 274 EPDEVTMVSVISACAKAGALDLGKWVHAYIDR-KGITVDLELSTALIDMYAKCGLIERAR 332

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + +KD   W++MIVG+A+HG  +DAL LF+ M  ++++P+++TFIG+LSACAH+G
Sbjct: 333 GVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 392

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV +GRR+++ M++   I+P +E+YGCMV+LL R+G +++AY  V+ M + P+SV+W TL
Sbjct: 393 LVEDGRRYWSIMQN-LGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTL 451

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L AC+    I + E   + L+     N   YVLLSN+YA+   WD V+ +R  MK K V 
Sbjct: 452 LVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVT 511

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
              G SSIE++  +HEF+  D  HP+ +EI ++L E+   ++  G+ P T  VLHD+GE+
Sbjct: 512 AIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEE 571

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ +L  HSE+LA+A+GL+ T+    I++VKNLR C DCH V K+ISK   R+I++RDR
Sbjct: 572 EKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDR 631

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFH F+ G+CSC D+W
Sbjct: 632 VRFHKFMGGSCSCKDFW 648



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 8/240 (3%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQ 119
           R LFD + +    C+N +I      G A  AL ++RRML A    PN  T    L AC  
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAA 187

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD-RVNDKDVVVWN 178
           + A   GR +H+     + +  +  V T L+N+Y+KC  +  AR VFD    DK++V W+
Sbjct: 188 VPAPGEGRQLHAQALR-QGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 246

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +M+ GY+  G   +AL LF EM  + ++P ++T + ++SACA AG ++ G ++ +   D 
Sbjct: 247 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDR 305

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI--ALG 296
             I   +E    ++++ ++ G +E A + V D  +E D+  W  ++    +HG +  ALG
Sbjct: 306 KGITVDLELSTALIDMYAKCGLIERA-RGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 364


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/484 (44%), Positives = 319/484 (65%), Gaps = 14/484 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           ++ D +    L+    +  DV   E + + + +    SL     ++L  YA  G+VA+A 
Sbjct: 117 VEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M EKD+V WN +I+G+A++G   EAL L+  M  + ++P+  T V++LSAC +IG
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIG 236

Query: 122 ALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           AL  G+  H Y+     IKV    N+     L+++Y++CG +++A+ +FD + DK+ V W
Sbjct: 237 ALTLGKRFHVYM-----IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291

Query: 178 NSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            S+IVG A++G GK+A++LF  M  +  L P +ITF+G+L AC+H G+V EG  +F  M 
Sbjct: 292 TSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMS 351

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +EY IEP++EH+GCMV+LL+RAGQV++AY+ ++ M ++P+ V+W TLLGAC +HG+  L 
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLA 411

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E     ++     +SG YVLLSN+YA+   W  V ++R  M   GV+K PG S +E+ N+
Sbjct: 412 ELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNR 471

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEFL GD  HP++  IY  L+E+   L+ EGYVPQ   V  D+ E++K+N+L  HSEK+
Sbjct: 472 VHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKI 531

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AF LIST     I++VKNL+VC DCH   KL+SK   R+I++RDR+RFHHF NG+CSC
Sbjct: 532 AIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSC 591

Query: 477 GDYW 480
            DYW
Sbjct: 592 QDYW 595



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 5/250 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           L   L        ++ A  +F  +E+  +V  WN +I GYA+ G +  A+ L+R M A  
Sbjct: 56  LIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASG 115

Query: 103 -VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            VEP+  T   +L A G++  +  G  IHS +  S      + V  +L+++Y+ CG +  
Sbjct: 116 FVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVAS 174

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VFD++ +KD+V WNS+I G+A +G  ++AL L+ EM    +KP   T + LLSACA 
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAK 234

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            G +  G+RF   M  +  +   +     +++L +R G+VEEA K + D  ++ +SV W 
Sbjct: 235 IGALTLGKRFHVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEA-KTLFDEMVDKNSVSWT 292

Query: 282 TLLGACRLHG 291
           +L+    ++G
Sbjct: 293 SLIVGLAVNG 302



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 33/189 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L+ S  L+DLYAR G V  A+ LF                            
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF---------------------------- 280

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
              D+M +K+ V W  +I G A +GL  EA+ LF+ M + E + P E+T V +L AC   
Sbjct: 281 ---DEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHC 337

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +     I+  ++    ++++ ++ G +K A   +       +VV+W +
Sbjct: 338 GMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRT 397

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 398 LLGACTVHG 406


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/440 (46%), Positives = 296/440 (67%), Gaps = 8/440 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + T + +  ++ +AR  FD M EK +  WN MI GYAQ+GL   A+ LF +M+   V 
Sbjct: 352 TAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVR 411

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN +T  + LSAC Q+GAL  G+W+H  I    +++ NV V TALI+MY+KCGS+ +AR 
Sbjct: 412 PNPITISSTLSACAQLGALSLGKWLHRII-TEEDLEPNVYVMTALIDMYAKCGSISEARR 470

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +++K+VV WN+MI GY +HG G +AL+L+ +M    L P+  TF+ +L AC+H GL
Sbjct: 471 IFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGL 530

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL----W 280
           V EG + F +M D+YAI P +EH  CMV+LL RAGQ++EA++L+ +    P S +    W
Sbjct: 531 VEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEF---PKSAVGPGVW 587

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGAC +H +  L +  ++ L   +  NSG YVLLSN++ +   +   A VR   K +
Sbjct: 588 GALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSR 647

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            + K PG + IE+ NK H F+AGD  HP+S+ IY  LE++   +   GY P+T+  L+D+
Sbjct: 648 KLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDV 707

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K++ ++VHSEKLA+AFGL+ST+PGT I+I+KNLRVC DCH   K ISK T R I++
Sbjct: 708 EEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVV 767

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD +RFHHF +G CSCGDYW
Sbjct: 768 RDASRFHHFRDGVCSCGDYW 787



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 153/282 (54%), Gaps = 10/282 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT +++ Y+K G+V +AR LFD ME+ D+V +N +I GY+ +G+   ++ LF  ++   +
Sbjct: 250 LTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGL 309

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T VA++      G     + +H ++  S     N  V TA+  ++ +   ++ AR
Sbjct: 310 WPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKS-GFTANSPVSTAITTLHCRLNDMESAR 368

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             FD + +K +  WN+MI GYA +G  + A+ LF +M ++ ++P+ IT    LSACA  G
Sbjct: 369 KAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLG 428

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL--VMDMKIEPDSVLWG 281
            ++ G+     + +E  +EP V     ++++ ++ G + EA ++   MD K   + V W 
Sbjct: 429 ALSLGKWLHRIITEE-DLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK---NVVSWN 484

Query: 282 TLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYA 322
            ++    LHG  A   K+ + ++  + L  S T+  LS +YA
Sbjct: 485 AMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATF--LSVLYA 524



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 152/324 (46%), Gaps = 52/324 (16%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACG 118
           AR +FD +   D V WN ++ G +     +EA+  F RM+ +  V P+  T  +VL A  
Sbjct: 168 ARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVLPAAA 223

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           ++  +  GR +HS+ E    +  +  V T LI++YSKCG ++ AR +FD +   D+V +N
Sbjct: 224 EVADVTMGRCVHSFAEKC-GLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYN 282

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG-----------LLSACAHAGLVNE 227
           ++I GY+++G    ++ LF E+  + L P+  T +            LL+ C H  ++  
Sbjct: 283 ALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKS 342

Query: 228 G------------------------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           G                        R+ F+TM      E  +E +  M++  ++ G  E 
Sbjct: 343 GFTANSPVSTAITTLHCRLNDMESARKAFDTMP-----EKTMESWNAMISGYAQNGLTEM 397

Query: 264 AYKL---VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL--LS 318
           A  L   ++ + + P+ +   + L AC   G ++LG+ +   +  ++L     YV+  L 
Sbjct: 398 AVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDL-EPNVYVMTALI 456

Query: 319 NIYAAIGNWDGVARVRTLMKEKGV 342
           ++YA  G+     R+   M  K V
Sbjct: 457 DMYAKCGSISEARRIFNTMDNKNV 480



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 8/149 (5%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +T ++  YAK G ++ AR +F+ M+ K+VV WN MI GY  HG   EAL L++ ML   +
Sbjct: 452 MTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHL 511

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P   T ++VL AC   G +E G  +   + +   I   ++  T ++++  + G LK+A 
Sbjct: 512 LPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEA- 570

Query: 164 LVFDRVND--KDVV---VWNSMIVGYAMH 187
             F+ +++  K  V   VW +++    +H
Sbjct: 571 --FELISEFPKSAVGPGVWGALLGACMVH 597



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRI 203
           V +AL  +Y     +  AR VFD V   D V+WN+++ G +    G +A++ F  M C  
Sbjct: 151 VASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDG 206

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            ++P   T   +L A A    V  G R  ++  ++  +         +++L S+ G VE 
Sbjct: 207 SVRPDATTLASVLPAAAEVADVTMG-RCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVES 265

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYA 322
           A + + DM  +PD V +  L+    ++G +     +   L++  L  NS T V L  +++
Sbjct: 266 A-RCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHS 324

Query: 323 AIGN 326
             G+
Sbjct: 325 PFGH 328


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/437 (47%), Positives = 310/437 (70%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T +L  YAK  +VA AR +FD M  +K++V W+ M+ GY++ G+ NEAL LFR M A  V
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 224

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+EVT V+V+SAC + GAL+ G+W+H+YI+  + I V++++ TALI+MY+KCG ++ AR
Sbjct: 225 EPDEVTMVSVISACAKAGALDLGKWVHAYIDR-KGITVDLELSTALIDMYAKCGLIERAR 283

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + +KD   W++MIVG+A+HG  +DAL LF+ M  ++++P+++TFIG+LSACAH+G
Sbjct: 284 GVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 343

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV +GRR+++ M++   I+P +E+YGCMV+LL R+G +++AY  V+ M + P+SV+W TL
Sbjct: 344 LVEDGRRYWSIMQN-LGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTL 402

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L AC+    I + E   + L+     N   YVLLSN+YA+   WD V+ +R  MK K V 
Sbjct: 403 LVACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVT 462

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
              G SSIE++  +HEF+  D  HP+ +EI ++L E+   ++  G+ P T  VLHD+GE+
Sbjct: 463 AIAGRSSIEINGHLHEFVVSDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEE 522

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ +L  HSE+LA+A+GL+ T+    I++VKNLR C DCH V K+ISK   R+I++RDR
Sbjct: 523 EKEAALCQHSERLAIAYGLLKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDR 582

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFH F+ G+CSC D+W
Sbjct: 583 VRFHKFMGGSCSCKDFW 599



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 8/240 (3%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQ 119
           R LFD + +    C+N +I      G A  AL ++RRML A    PN  T    L AC  
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGSA-PALAVYRRMLRAGSPRPNSFTLAFALKACAA 138

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD-RVNDKDVVVWN 178
           + A   GR +H+     + +  +  V T L+N+Y+KC  +  AR VFD    DK++V W+
Sbjct: 139 VPAPGEGRQLHAQALR-QGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 197

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +M+ GY+  G   +AL LF EM  + ++P ++T + ++SACA AG ++ G ++ +   D 
Sbjct: 198 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDR 256

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI--ALG 296
             I   +E    ++++ ++ G +E A + V D  +E D+  W  ++    +HG +  ALG
Sbjct: 257 KGITVDLELSTALIDMYAKCGLIERA-RGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 315


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 294/436 (67%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  YA+ G++  A  +FD ++ K+ V WN +I G+A+ G    AL+ F  ML    E
Sbjct: 191 SALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFE 250

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
               T  +V S+  ++GALE G+W+H+++  SR  K+   VG  L++MY+K GS+ DAR 
Sbjct: 251 ATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQ-KLTAFVGNTLLDMYAKSGSMIDARK 309

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDRV++KD+V WNSM+  +A +G GK+A+  F EM +  +  + ITF+ +L+AC+H GL
Sbjct: 310 VFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGL 369

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG+R+F  MK EY +EP+++HY  +V LL RAG +  A   +  M +EP + +WG LL
Sbjct: 370 VKEGKRYFEMMK-EYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALL 428

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H N  +G+  A+++   +  +SG  VLL NIYA+ G WD  ARVR +MK  GV+K
Sbjct: 429 AACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKK 488

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N VH F+A D  HP+++EIY M  EI+  ++ EGYVP    VL  + +++
Sbjct: 489 EPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQE 548

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L+ HSEKLA+AF LI    G +I+I+KN+R+C DCH+ FK ISK  GR+I++RD N
Sbjct: 549 KEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTN 608

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+CSCGDYW
Sbjct: 609 RFHHFSSGSCSCGDYW 624



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 144/271 (53%), Gaps = 10/271 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K   V  AR +FD M  KD+V W  +I GYAQ+ +  EA+ L   ML  + +P
Sbjct: 91  SLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKP 150

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T  ++L A G      +GR IH+ +        +V VG+AL++MY++CG +  A  V
Sbjct: 151 NGFTFASLLKAAGAYADSGTGRQIHA-LAVKCGWHEDVYVGSALLDMYARCGKMDMATAV 209

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD+++ K+ V WN++I G+A  G G+ AL  F EM R   + +  T+  + S+ A  G +
Sbjct: 210 FDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 226 NEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G+    + +K    +   V +   ++++ +++G + +A K V D     D V W ++L
Sbjct: 270 EQGKWVHAHVIKSRQKLTAFVGN--TLLDMYAKSGSMIDARK-VFDRVDNKDLVTWNSML 326

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            A   +G   LG++   +   + +  SG Y+
Sbjct: 327 TAFAQYG---LGKEAVSHF--EEMRKSGVYL 352



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 9/228 (3%)

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           A ++ P      + ++AC Q   LE  R IH+++ +SR    +  +  +LI+MY KC S+
Sbjct: 44  AGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSR-FAGDAFLDNSLIHMYCKCRSV 102

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            DAR VFD++  KD+V W S+I GYA +    +A+ L   M + R KP+  TF  LL A 
Sbjct: 103 LDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAA 162

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
                   GR+  + +  +      V     ++++ +R G+++ A   V D     + V 
Sbjct: 163 GAYADSGTGRQ-IHALAVKCGWHEDVYVGSALLDMYARCGKMDMA-TAVFDKLDSKNGVS 220

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYAAIG 325
           W  L+      G+   GE  A    ++ L N    T+   S+++++I 
Sbjct: 221 WNALISGFARKGD---GES-ALMTFAEMLRNGFEATHFTYSSVFSSIA 264



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 37/180 (20%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V  +L+D+YA+ G ++ A K+F  +  + LV+  +MLT                     
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLT--------------------- 327

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                      +AQ+GL  EA+  F  M    V  N++T + +L+AC   G ++ G+   
Sbjct: 328 ----------AFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGK--- 374

Query: 131 SYIENSRNIKVNVQVG--TALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
            Y E  +   +  ++     ++ +  + G L  A   +F    +    VW +++    MH
Sbjct: 375 RYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 297/468 (63%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  Y + G V  A +LF  MP+  + +   M+  + ++G V AA+ +F+ M E+D  
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MI  Y Q+    EAL  FR ML   V PN  + +++L+ C  +  L+ GR +H+ +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
               +  ++V   +ALI MY KCG+L  A+ VF     KD+V+WNSMI GYA HG G+ A
Sbjct: 360 LRC-SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L +F++M    + P  IT+IG L+AC++ G V EGR  FN+M    +I P  EHY CMV+
Sbjct: 419 LGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVD 478

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL R+G VEEA+ L+ +M +EPD+V+WG L+GACR+H N  + E  A+ L+     N+G 
Sbjct: 479 LLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGP 538

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD-LRHPKSKE 372
           YVLLS+IY ++G W+  +++R  +  + + K PGCS IE   +VH F +GD L HP+   
Sbjct: 539 YVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAA 598

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I  +LE+++G L   GY      VLHDI E+QK +SL  HSE+ AVA+GL+    G  I+
Sbjct: 599 ILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIR 658

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCH+  KLI+K T R+I++RD NRFHHF +G CSC DYW
Sbjct: 659 VMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 42/310 (13%)

Query: 23  GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82
            G V  A +LF  MP R +V+ T ML+ Y + G +  AR LFD+M +++VV W  MI GY
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGY 215

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           AQ+G  N A  LF  M     E NEV+  A+L    Q G +E    + + +         
Sbjct: 216 AQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEH-----P 266

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V    A++  + + G +  A+ VF+++ ++D   W++MI  Y  + F  +AL  F EM  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM------KDEYAI--------------- 241
             ++P+  + I +L+ CA   +++ GR     M       D +A+               
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 242 --------EPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMKI---EPDSVLWGTLLGACRL 289
                   EPK +  +  M+   ++ G  E+A  +  DM++    PD + +   L AC  
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 290 HGNIALGEKI 299
            G +  G +I
Sbjct: 447 TGKVKEGREI 456



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 20/267 (7%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           AR G++  A   F  MP R+  S   +L  Y +     AA  LF  M  +D+  +N +I 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 81  GYA--QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           G +  +  L + A  L     +    P+ V+  ++L    + G L     +   +    +
Sbjct: 88  GLSLRRQTLPDAAAAL----ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
           +   V +G  L       G + +AR +FD + D+DVV W +M+ GY   G   +A  LF+
Sbjct: 144 VSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           EM +  +    +++  ++S  A  G VN  R+ F  M +   +      +  M+    +A
Sbjct: 199 EMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQA 249

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           G VE+A +L   M   P +     ++G
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 89/187 (47%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++ S D D++  ++L+ +Y + G++  A+++F T   + +V   +M+T Y          
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY---------- 409

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHGL  +AL +F  M    + P+ +T +  L+AC   G
Sbjct: 410 ---------------------AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTG 448

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ GR I + +  + +I+   +  + ++++  + G +++A  L+ +   + D V+W ++
Sbjct: 449 KVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGAL 508

Query: 181 IVGYAMH 187
           +    MH
Sbjct: 509 MGACRMH 515


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 302/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK     D  V+T+L+D+Y + G      ++F       + S   ++   ++  +V+ A 
Sbjct: 183 VKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEAL 242

Query: 62  VLFDDME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            LF +      E +VV W  ++    Q+G   EA+ LFR M +E +EPN VT   VL A 
Sbjct: 243 RLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAF 302

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             I AL  GR  H +    +    ++ VG+AL++MY+KCG ++DAR++F+ +  ++VV W
Sbjct: 303 ANIAALMHGRSAHCF-SLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSW 361

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI GYAMHG  ++A++LF  M   + KP  +TF  +L AC+ AG   EGR +FN M+ 
Sbjct: 362 NAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQH 421

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           ++ I P++EHY CMV LL RAG++++AY ++  M  EPD  +WG+LLG+CR+HGN+ L E
Sbjct: 422 KHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAE 481

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             AE L      N+G YVLLSNIYA+   WDGV R+R +MK  G++KE GCS IE+ NKV
Sbjct: 482 VAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKV 541

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H  LAGD  HP    I   L+ +   ++  G+ P T  VLHD+ E++K + L VHSEKLA
Sbjct: 542 HMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLA 601

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VA GLIST  GT ++++KNLR+C DCH   K IS F  R+I +RD NRFHHF +G CSC 
Sbjct: 602 VALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCA 661

Query: 478 DYW 480
           DYW
Sbjct: 662 DYW 664



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 145/325 (44%), Gaps = 42/325 (12%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           + +D +V++SL+  Y R G    A  +   MP R++V  + ++  +A  G+   A  L +
Sbjct: 51  VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110

Query: 66  DME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            M     E +V+ WN ++ G  + G A +A++   RM  E   P+       LSA G +G
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVG 170

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +  G  +H Y+  +   +++  V TALI+MY KCG   +   VFD  +  DV   N+++
Sbjct: 171 DVAVGEQLHGYVVKA-GCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G + +    +AL+LF E     ++ + +++  +++ C   G   E    F  M+ E  I
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE-GI 288

Query: 242 EPKVEHYGC-----------------------------------MVNLLSRAGQVEEAYK 266
           EP      C                                   +V++ ++ G+V +A +
Sbjct: 289 EPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDA-R 347

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHG 291
           ++ +     + V W  ++G   +HG
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHG 372



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 40/193 (20%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V ++L++ Y + G+  DAR V D +  + VV W+++I  +A HG  + A  L   M    
Sbjct: 57  VASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDG 116

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           ++P+ IT+ GL+S                                     L+R+G+  +A
Sbjct: 117 VEPNVITWNGLVSG------------------------------------LNRSGRARDA 140

Query: 265 YKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNI 320
              ++ M  E   PD+      L A    G++A+GE++  Y++      ++     L ++
Sbjct: 141 VLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDM 200

Query: 321 YAAIGNWDGVARV 333
           Y   G  D + RV
Sbjct: 201 YGKCGRADEIVRV 213


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/464 (45%), Positives = 306/464 (65%), Gaps = 5/464 (1%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR G +   +++ A   +  LVS       ++  Y+K G +  AR +FD M ++DVV W 
Sbjct: 358 ARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWT 417

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
            ++ GYA  G   E+   F++ML + VE N++T + VL AC    AL+ G+ IH+ +  +
Sbjct: 418 ALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA 477

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             I  ++ V  AL++MY KCGS++DA  V + ++ +DVV WN++I G A +G G +ALQ 
Sbjct: 478 -GIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQK 536

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F  M    ++P+  TF+ ++SAC    LV EGRR F +M+ +Y I P  +HY CMV++L+
Sbjct: 537 FEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILA 596

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           RAG + EA  +++ M  +P + +WG LL ACR HGN+ +GE+ AE  +     N+GTYV 
Sbjct: 597 RAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVS 656

Query: 317 LSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMM 376
           LS IYAA G W  VA++R LMKE+GV+KEPG S IE++ +VH F+AGD  HP+++EIY  
Sbjct: 657 LSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSE 716

Query: 377 LEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKN 436
           LE +   +K+ GYVP T+ V+HD+ ++ K+ ++  HSEKLA+A+GLIST P T I++ KN
Sbjct: 717 LEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKN 776

Query: 437 LRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LRVC DCH   K ISK TGR+I+ RD +RFHHF NG CSCGDYW
Sbjct: 777 LRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 167/333 (50%), Gaps = 35/333 (10%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + T+L  Y   G V  AR LFD    K VV WNVMI GYA  GL  EA  LF  M  E +
Sbjct: 82  INTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGL 141

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP++ T V++LSAC    AL  GR +H  +  +  +  N  VG ALI+MY+KCGS++DAR
Sbjct: 142 EPDKFTFVSILSACSSPAALNWGREVHVRVMEA-GLANNATVGNALISMYAKCGSVRDAR 200

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD +  +D V W ++   YA  G+ +++L+ ++ M +  ++PS IT++ +LSAC    
Sbjct: 201 RVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLA 260

Query: 224 LVNEGR---------------RFFNTMKDEY----AIEPKVEHYGC-----------MVN 253
            + +G+               R    +   Y    A++   E + C           M+ 
Sbjct: 261 ALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320

Query: 254 LLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
            L  +GQ+EEA+ +   M  E   PD V +  +L AC   G +A G++I    +   L +
Sbjct: 321 GLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS 380

Query: 311 SGTY-VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              +   L N+Y+  G+     +V   M ++ V
Sbjct: 381 DVRFGNALINMYSKAGSMKDARQVFDRMPKRDV 413



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 5/177 (2%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V +L +C +   L  G+ +H +I     +K NV +   L+ +Y  CGS+ +AR +FD+ +
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRF-GMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +K VV WN MI GYA  G G++A  LF  M +  L+P   TF+ +LSAC+    +N GR 
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166

Query: 231 F-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                M+   A    V +   ++++ ++ G V +A + V D     D V W TL GA
Sbjct: 167 VHVRVMEAGLANNATVGN--ALISMYAKCGSVRDARR-VFDAMASRDEVSWTTLTGA 220


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/441 (46%), Positives = 299/441 (67%), Gaps = 8/441 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + T++  Y   G++ A+R +FD ++E  VV +N +I   A++  ANEAL LFR +    +
Sbjct: 150 VPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGL 209

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIEN---SRNIKVNVQVGTALINMYSKCGSLK 160
           +P +VT + VLS+C  +G+L+ GRW+H Y++     R +KVN    T LI+MY+KCGSL 
Sbjct: 210 KPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVN----TTLIDMYAKCGSLD 265

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  VF  +  +D   W+++IV YA HG G  A+ + NEM + +++P +ITF+G+L AC+
Sbjct: 266 DAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACS 325

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GLV EG  +F+ M +EY I P ++HYGCMV+LL RAG+++EAYK + ++ I+P  +LW
Sbjct: 326 HNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILW 385

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            TLL AC  HGN+ +G+++ E +   + ++ G YV+ SN+ A  G WD V  +R  M +K
Sbjct: 386 RTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDK 445

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-D 399
           G  K PGCSSIE++N VHEF AG+  H  S  ++  L+E+   LK+ GYVP T +V + D
Sbjct: 446 GAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYAD 505

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + +++K+  L  HSEKLA+ FGL++T PGT+I++VKNLRVC DCH   K IS   GR+I+
Sbjct: 506 MEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQII 565

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD  RFHHF +G CSCGDYW
Sbjct: 566 LRDVQRFHHFKDGKCSCGDYW 586



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 18/244 (7%)

Query: 49  TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV 108
           T    +  +  A  LFD + + ++V +N M  GYA+       +  FRR           
Sbjct: 69  TSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRR----------- 117

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
                L    ++ AL  G+ +H +      +  N+ V   LINMY+ CG +  +R VFD+
Sbjct: 118 ----CLRLVSKVKALAEGKQLHCFAV-KLGVSDNMYVVPTLINMYTACGDIDASRRVFDK 172

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           +++  VV +N++I+  A +    +AL LF E+  I LKP+D+T + +LS+CA  G ++ G
Sbjct: 173 IDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLG 232

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
           R     +K +Y  +  V+    ++++ ++ G +++A  +  DM  + D+  W  ++ A  
Sbjct: 233 RWMHEYVK-KYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWSAIIVAYA 290

Query: 289 LHGN 292
            HG+
Sbjct: 291 THGD 294



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K+  D+ + V+T+L+D+YA+ G +  A  +F  MP+R   + + ++  YA  G       
Sbjct: 241 KYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHG------- 293

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                            DG+       +A+ +   M  EKV+P+E+T + +L AC   G 
Sbjct: 294 -----------------DGF-------QAISMLNEMKKEKVQPDEITFLGILYACSHNGL 329

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV-VVWNSMI 181
           +E G      + N   I  +++    ++++  + G L +A    D +  K   ++W +++
Sbjct: 330 VEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLL 389

Query: 182 VGYAMHG---FGKDALQLFNEM 200
              + HG    GK  ++   E+
Sbjct: 390 SACSTHGNVEMGKRVIERIFEL 411



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 45/264 (17%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRV 169
           ++S   +   L+  + I +Y   + N + N  V T  IN  +      S++ A  +FD++
Sbjct: 29  LISLIPKCTTLKELKQIQAYTIKT-NYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQI 87

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---------------------IRLKPS 208
              ++V++N+M  GYA      D L++     R                     ++L  S
Sbjct: 88  TQPNIVLFNTMARGYARLN---DPLRMITHFRRCLRLVSKVKALAEGKQLHCFAVKLGVS 144

Query: 209 D-----ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           D      T I + +AC   G ++  RR F+ +      EP V  Y  ++  L+R  +  E
Sbjct: 145 DNMYVVPTLINMYTAC---GDIDASRRVFDKID-----EPCVVAYNAIIMSLARNNRANE 196

Query: 264 AYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS-GTYVLLSN 319
           A  L  +++   ++P  V    +L +C L G++ LG  + EY+              L +
Sbjct: 197 ALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLID 256

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQ 343
           +YA  G+ D    V   M ++  Q
Sbjct: 257 MYAKCGSLDDAVNVFRDMPKRDTQ 280


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/436 (45%), Positives = 302/436 (69%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T++L+ Y   G+ ++ARVLFD M++K++V WN MI GY+Q+GL  E+L LFR+ L+E ++
Sbjct: 490 TSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQ 549

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +E+  V+V  AC Q+ AL  G+  H Y+  +   + +  VG ++I+MY+K G +K++R 
Sbjct: 550 SHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTE-DAFVGCSIIDMYAKSGCIKESRK 608

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + DK+V  WN++IV + +HG GK+A++L+  M ++   P   T+IG+L AC HAGL
Sbjct: 609 VFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGL 668

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG ++F  M++   IEPK+EHY C++++L+RAG++++A +LV +M  E D+ +W +LL
Sbjct: 669 VEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLL 728

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +CR  G + +GEK+A+ L+      +  YVLLSN+YA +G WDGV RVR +MKE G+QK
Sbjct: 729 RSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQK 788

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           + GCS IE+  +V+ F+ GD   PKS EI ++   +   +   GY P T  VLH++GE++
Sbjct: 789 DAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEE 848

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K + L  HSEKLA++FGL+ T  GT+++I KNLR+C DCH   KLISK   R+I++RD  
Sbjct: 849 KIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNK 908

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSC DYW
Sbjct: 909 RFHHFRDGLCSCCDYW 924



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 136/251 (54%), Gaps = 5/251 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
           T ++  YA  G    +R++FD+ME K+++ WN ++ GY ++GL  + + +F  ++++   
Sbjct: 83  TRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDF 142

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T  +V+ ACG I  +  G  IH  +     + ++V VG AL+ MY KCG++ +A 
Sbjct: 143 QPDNFTFPSVIKACGGILDVRLGEVIHGMVI-KMGLVLDVFVGNALVGMYGKCGAVDEAM 201

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHA 222
            VFD + + ++V WNSMI  ++ +GF +D+  L  EM     L P  +T + +L  CA  
Sbjct: 202 KVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGE 261

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G V+ G    + +  +  +  +V     MV + S+ G + EA ++        + V W T
Sbjct: 262 GEVDIGMG-IHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA-QMSFVKNNNKNVVSWNT 319

Query: 283 LLGACRLHGNI 293
           ++ A  L G++
Sbjct: 320 MISAFSLEGDV 330



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 137/249 (55%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
              +  YAK G + +A  +F  + +K V  WN +I G+AQ+G   +AL L  +M     +
Sbjct: 389 NAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQ 448

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T  ++L AC  + +L+ G+ IH Y+  +  ++ +  VGT+L++ Y  CG    AR+
Sbjct: 449 PDWFTISSLLLACAHLKSLQYGKEIHGYVLRN-GLETDFFVGTSLLSHYIHCGKASSARV 507

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FDR+ DK++V WN+MI GY+ +G   ++L LF +     ++  +I  + +  AC+    
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSA 567

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  G+     +    A++ +    GC ++++ +++G ++E+ K+   +K + +   W  +
Sbjct: 568 LRLGKEAHGYVLK--ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLK-DKNVASWNAI 624

Query: 284 LGACRLHGN 292
           + A  +HG+
Sbjct: 625 IVAHGIHGH 633



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 79/349 (22%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L  D++V  +LV +Y + G V  A K+F  MP+ +LVS                 
Sbjct: 172 VIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVS----------------- 214

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQ 119
                         WN MI  ++++G + ++  L   ML E+ + P+ VT V +L  C  
Sbjct: 215 --------------WNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAG 260

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
            G ++ G  IH  +     +   V V  A++ MYSKCG L +A++ F + N+K+VV WN+
Sbjct: 261 EGEVDIGMGIHG-LAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNT 319

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSAC----------------- 219
           MI  +++ G   +A  L  EM +I+   +K +++T + +L AC                 
Sbjct: 320 MISAFSLEGDVNEAFNLLQEM-QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSF 378

Query: 220 -----------------AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
                            A  G +N   + F+ + D+      V  +  ++   ++ G   
Sbjct: 379 RHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDK-----TVSSWNALIGGHAQNGDPR 433

Query: 263 EAYKLVMDMKI---EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           +A  L+  M     +PD     +LL AC    ++  G++I  Y++   L
Sbjct: 434 KALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGL 482



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 3/180 (1%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L ACG    +E+GR +H ++ +S + + +  + T LI MY+ CGS  D+RLVFD +  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           +++ WN+++ GY  +G   D +++F ++      +P + TF  ++ AC     V  G   
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG-EV 167

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            + M  +  +   V     +V +  + G V+EA K V D   E + V W +++ A   +G
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMK-VFDFMPETNLVSWNSMICAFSENG 226


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/516 (42%), Positives = 314/516 (60%), Gaps = 39/516 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ------- 54
           +K  LD +L+V   L+ +Y + G +  A ++F  M  + +VS  +M+  YA         
Sbjct: 146 LKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDAL 205

Query: 55  -------------------------GEVAAARVL-----FDDMEEKDVVCWNVMIDGYAQ 84
                                       ++  VL     F ++E K+++ WNVMI  Y +
Sbjct: 206 EICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMK 265

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + L  +A+ L+ +M   +VEP+ +T  +VL ACG + AL  GR IH Y+E  + +  N+ 
Sbjct: 266 NSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKK-LCPNLL 324

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  +LI+MY++CG L DA+ VFDR+  +DV  W S+I  Y M G G +A+ LF EM    
Sbjct: 325 LENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSG 384

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             P  I F+ +LSAC+H+GL++EGR +F  M D+Y I P++EHY C+V+LL RAG+V+EA
Sbjct: 385 QAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEA 444

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y ++  M IEP+  +W TLL +CR+  N+ +G   A+ L+      SG YVLLSNIYA  
Sbjct: 445 YNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKA 504

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W  V  +R++MK K ++K PG S++EL+N+VH FLAGD  HP+SKEIY  L  +   +
Sbjct: 505 GRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKM 564

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
           K  GYVP+T   LHD+ E+ K+  L VHSEKLA+ F L++TQ    I+I KNLRVC DCH
Sbjct: 565 KELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCH 623

Query: 445 AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              KLISK   R+I++RD NRFHHF +G CSCGDYW
Sbjct: 624 IAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 149/305 (48%), Gaps = 18/305 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  GE    R +FD+M +++VV +NVMI  Y  +   ++ L++FR M+     P+
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC     L  G  IH  +     +  N+ VG  LI MY KCG L +AR VF
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKV-GLDFNLFVGNGLIAMYGKCGCLFEARRVF 177

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  KDVV WNSM+ GYA +    DAL++  EM     KP   T   L+ A A+    N
Sbjct: 178 DEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSEN 237

Query: 227 --EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWG 281
                + F  ++ +  I      +  M+ +  +     +A  L + M   ++EPD++ + 
Sbjct: 238 VLYVEKIFVNLERKNLIS-----WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFA 292

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLM 337
           ++L AC     + LG +I EY+  + L  +   +LL N    +YA  G  D   RV   M
Sbjct: 293 SVLPACGDLSALLLGRRIHEYVEKKKLCPN---LLLENSLIDMYARCGCLDDAKRVFDRM 349

Query: 338 KEKGV 342
           K + V
Sbjct: 350 KFRDV 354



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%)

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           N   N  +G  L+  Y+ CG     R VFD ++D++VV +N MI  Y  +    D L +F
Sbjct: 48  NSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVF 107

Query: 198 NEMCRIRLKPSDITFIGLLSACA 220
            EM     +P + T+  +L AC+
Sbjct: 108 REMVNGGFRPDNYTYPCVLKACS 130


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 297/468 (63%), Gaps = 2/468 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  Y + G V  A +LF  MP+  + +   M+  + ++G V AA+ +F+ M E+D  
Sbjct: 240 TAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG 299

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ MI  Y Q+    EAL  FR ML   V PN  + +++L+ C  +  L+ GR +H+ +
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAM 359

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
               +  ++V   +ALI MY KCG+L  A+ VF     KD+V+WNSMI GYA HG G+ A
Sbjct: 360 LRC-SFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L +F++M    + P  IT+IG L+AC++ G V EGR  FN+M    +I P  EHY CMV+
Sbjct: 419 LGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVD 478

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL R+G VEEA+ L+ +M +EPD+V+WG L+GACR+H N  + E  A+ L+     N+G 
Sbjct: 479 LLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGP 538

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD-LRHPKSKE 372
           YVLLS+IY ++G W+  +++R  +  + + K PGCS IE   +VH F +GD L HP+   
Sbjct: 539 YVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAA 598

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I  +LE+++G L   GY      VLHDI E+QK +SL  HSE+ AVA+GL+    G  I+
Sbjct: 599 ILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIR 658

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++KNLRVC DCH+  KLI+K T R+I++RD NRFHHF +G CSC DYW
Sbjct: 659 VMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 42/310 (13%)

Query: 23  GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82
            G V  A +LF  MP R +V+ T ML+ Y + G +  AR LFD+M +++VV W  MI GY
Sbjct: 156 AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGY 215

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           AQ+G  N A  LF  M     E NEV+  A+L    Q G +E    + + +         
Sbjct: 216 AQNGEVNLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEH-----P 266

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V    A++  + + G +  A+ VF+++ ++D   W++MI  Y  + F  +AL  F EM  
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM------KDEYAI--------------- 241
             ++P+  + I +L+ CA   +++ GR     M       D +A+               
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 242 --------EPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMKI---EPDSVLWGTLLGACRL 289
                   EPK +  +  M+   ++ G  E+A  +  DM++    PD + +   L AC  
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 290 HGNIALGEKI 299
            G +  G +I
Sbjct: 447 TGKVKEGREI 456



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 118/267 (44%), Gaps = 20/267 (7%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           AR G++  A   F  MP R+  S   +L  Y +     AA  LF  M  +D+  +N +I 
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALIS 87

Query: 81  GYA--QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           G +  +  L + A  L     +    P+ V+  ++L    + G L     +   +    +
Sbjct: 88  GLSLRRQTLPDAAAAL----ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
           +   V +G  L       G + +AR +FD + D+DVV W +M+ GY   G   +A  LF+
Sbjct: 144 VSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           EM     K + +++  ++S  A  G VN  R+ F  M +   +      +  M+    +A
Sbjct: 199 EMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVS-----WTAMLVGYIQA 249

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           G VE+A +L   M   P +     ++G
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVG 276



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 89/187 (47%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++ S D D++  ++L+ +Y + G++  A+++F T   + +V   +M+T Y          
Sbjct: 360 LRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY---------- 409

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHGL  +AL +F  M    + P+ +T +  L+AC   G
Sbjct: 410 ---------------------AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTG 448

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ GR I + +  + +I+   +  + ++++  + G +++A  L+ +   + D V+W ++
Sbjct: 449 KVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGAL 508

Query: 181 IVGYAMH 187
           +    MH
Sbjct: 509 MGACRMH 515


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 298/478 (62%), Gaps = 35/478 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  ++++   +V LYA  G++  A K+F  MPQR +++   M+    K G+   A  
Sbjct: 141 KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYK 200

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF +M E++V  W  MI GYAQ G + EA+ LF  M    + PNEVT VAVL AC  +G 
Sbjct: 201 LFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGN 260

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  GR IH +  N    + N++V   LI+MY KCG L+DA  +FD + ++ VV W++MI 
Sbjct: 261 LVLGRRIHDF-SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G A HG  +DAL LFN+M    +KP+ +TFIG+L AC+H G+V +GR++F +M  +Y I 
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P++EHYGCMV+L SRAG ++EA++ +M+M I P+ V+WG LLG C++H N+ L E+   +
Sbjct: 380 PRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRH 439

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L   +  N G YV+LSNIYA  G W+ VARVR LM+++G                     
Sbjct: 440 LSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTW------------------- 480

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
                          E++   +K +GYVP T +VL D+ E QK+  L  HSEKLAV FGL
Sbjct: 481 ---------------EKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGL 525

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I T PGT I+I+KNLRVC DCHA  K+IS  + R+I++RDRNRFH F NG+CSCGDYW
Sbjct: 526 IKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 138/296 (46%), Gaps = 35/296 (11%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           L A  L    P  SL  L+ + +  A     + A+++F  ++  +V  WN  +  +A+  
Sbjct: 34  LHAHLLKTNSPLSSL-PLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGD 92

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
              +A+ LF R+    + P+  T   VL AC ++  + +G+ +H Y+E    ++ N+ + 
Sbjct: 93  SPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK-LGLQSNMFLQ 151

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWN---------------------------- 178
             ++++Y+ CG +  AR VFD++  +DV+ WN                            
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211

Query: 179 ---SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
              SMI GYA  G  K+A+ LF EM    L P+++T + +L ACA  G +  GRR  +  
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHD-F 270

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +    E  +     ++++  + G +E+A ++  +M+ E   V W  ++     HG
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME-ERTVVSWSAMIAGLAAHG 325


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/477 (42%), Positives = 308/477 (64%), Gaps = 1/477 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  +  L V+ +LV LY++ G++  A ++F  M  + +VS  T+L+ Y +   +  A  +
Sbjct: 327 FVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F++M  K+ + W VM+ GY   G + +AL LF RM AE V+P + T    +SACG++G+L
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSL 446

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + G+ +H ++      + +   G ALI MY++CG++K+A L+F  + + D V WN+MI  
Sbjct: 447 KHGKQLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISA 505

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
              HG G++AL+LF+ M    + P  I+F+ +L+AC H+GLV+EG ++F +MK ++ I P
Sbjct: 506 LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIP 565

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
             +HY  +++LL RAG++ EA  L+  M  EP   +W  +L  CR  G++ LG   A+ L
Sbjct: 566 GEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
                 + GTY+LLSN Y+A G W   ARVR LM+++GV+KEPGCS IE  NKVH F+ G
Sbjct: 626 FKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVG 685

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D +HP++ ++Y  LE +   ++  GYVP T++VLHD+   QK++ L  HSE+LAV FGL+
Sbjct: 686 DTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLL 745

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              PG ++ ++KNLR+C DCHAV   +SK  GR+I++RD  RFHHF +G CSCG+YW
Sbjct: 746 KLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 159/320 (49%), Gaps = 39/320 (12%)

Query: 10  LYVSTSLVDLYARGGDVLS---AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           L VS +LV LY +   + +   A K+   MP +  ++ TTM+  Y ++G+V AAR +F++
Sbjct: 194 LSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEE 253

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ++ K  V WN MI GY   G+  EA  LFRRM+ E+V  +E T  +VLSAC   G    G
Sbjct: 254 VDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHG 313

Query: 127 RWIHSYIENSRN---IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---- 179
           + +H  I   +     +  + V  AL+ +YSKCG++  AR +FD +  KDVV WN+    
Sbjct: 314 KSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSG 373

Query: 180 ---------------------------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
                                      M+ GY   GF +DAL+LFN M    +KP D T+
Sbjct: 374 YVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTY 433

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            G +SAC   G +  G++    +  +   E        ++ + +R G V+EA  + + M 
Sbjct: 434 AGAISACGELGSLKHGKQLHGHLV-QLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP 492

Query: 273 IEPDSVLWGTLLGACRLHGN 292
              DSV W  ++ A   HG+
Sbjct: 493 -NIDSVSWNAMISALGQHGH 511



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 145/323 (44%), Gaps = 60/323 (18%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE- 69
           +++  L+ LY   GD+ +A  LF   P    V+ T+++  YA  G + AA   FD + + 
Sbjct: 60  HLTLRLIHLYTLSGDLPAAATLFRADP--CPVAATSLVAAYAAAGRLPAAVSFFDAVPQA 117

Query: 70  -KDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGR 127
            +D V  N +I  YA+   A  A+ +FR +LA   + P++ +  A+LSA G +  +    
Sbjct: 118 RRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNIS--- 174

Query: 128 WIHSYIENSRNIKVNV---------QVGTALINMYSKCGSL---KDARLVFDRVNDKDV- 174
                + +   ++ +V          V  AL+ +Y KC +L   +DAR V D + DKD  
Sbjct: 175 -----VRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDAL 229

Query: 175 ------------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
                                         VVWN+MI GY   G   +A +LF  M   R
Sbjct: 230 TWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLER 289

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRF---FNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
           +   + TF  +LSACA+AG    G+        ++  +  E  +     +V L S+ G +
Sbjct: 290 VPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNI 349

Query: 262 EEAYKLVMDMKIEPDSVLWGTLL 284
             A ++  +MK + D V W T+L
Sbjct: 350 AVARRIFDNMKSK-DVVSWNTIL 371


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/471 (43%), Positives = 298/471 (63%), Gaps = 1/471 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L V+ +L+  Y +   ++ A ++F  MP R ++S   +L+ Y     +  A  +F +M E
Sbjct: 326 LSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPE 385

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           ++V+ W VMI G AQ+G   E L LF +M +E +EP +      ++AC  +G+L++G+ I
Sbjct: 386 RNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQI 445

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           HS +    +    +  G ALI MYS+CG ++ A  VF  +   D V WN+MI   A HG 
Sbjct: 446 HSQVIRLGH-DSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGH 504

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           G  A++LF +M +  + P  ITF+ +L+AC HAGL+ EGR +F+TM   Y I P  +HY 
Sbjct: 505 GVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYA 564

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            +++LL RAG   +A  ++  M  E  + +W  LL  CR+HGN+ LG + A+ L+     
Sbjct: 565 RLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPG 624

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
             GTY++LSN+YAA+G WD VARVR LM+E+GV+KEPGCS +E+ N VH FL  D RHP+
Sbjct: 625 QDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPE 684

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
            + +Y  L+++   +K  GYVP T+ VLHD+  + K++SL  HSEKLAV +G++    G 
Sbjct: 685 VQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGA 744

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++ KNLR+C DCH  FK ISK   R+I++RDR RFHHF NG CSCG+YW
Sbjct: 745 TIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 158/323 (48%), Gaps = 46/323 (14%)

Query: 28  SAEKLFATMPQRSLV--SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           SA K+F   P+  +   S TTM+  Y +  ++ AAR L D +     V WN MI GY + 
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACG----QIGALESGRWIHSYI-----ENS 136
           GL  EA   FRRM +  ++ +E T  +++SACG    ++G    GR +H YI     E S
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPS 321

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY------------ 184
            +  ++V    ALI  Y+K   + +AR VFD++  +D++ WN+++ GY            
Sbjct: 322 HHFVLSVN--NALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSI 379

Query: 185 -------------------AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
                              A +GFG++ L+LFN+M    L+P D  F G ++AC+  G +
Sbjct: 380 FSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSL 439

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + G++  + +      +  +     ++ + SR G VE A  + + M    DSV W  ++ 
Sbjct: 440 DNGQQIHSQVI-RLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIA 497

Query: 286 ACRLHGNIALGEKIAEYLISQNL 308
           A   HG+     ++ E ++ +++
Sbjct: 498 ALAQHGHGVKAIELFEQMMKEDI 520



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 68/335 (20%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD--D 66
           + ++   L+++Y +  ++  A KLF  +P+  +V+ TT+L+ Y+  G V  A+ LF+   
Sbjct: 39  NTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATP 98

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +  +D V +N MI  Y+     + AL LF +M      P+  T  +VLSA   I   E  
Sbjct: 99  LTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEER- 157

Query: 127 RWIHSYIENSRNIKVNV----QVGTALINMYSKCGS---------LKDARLVFDRV---- 169
              H  + +   IK+       V  AL++ Y  C S         +  AR VFD      
Sbjct: 158 ---HCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQ 214

Query: 170 ---------------NDKDV--------------VVWNSMIVGYAMHGFGKDALQLFNEM 200
                          ND  V              V WN+MI GY   G  ++A   F  M
Sbjct: 215 IYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRM 274

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA------IEPKVEHY-----G 249
             + ++  + T+  L+SAC   G  NE    FN  +  +       +EP   H+      
Sbjct: 275 HSMGIQEDEYTYTSLISAC---GSCNEKMGMFNCGRQVHGYILRTVVEPS-HHFVLSVNN 330

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++   ++  ++ EA ++   M +  D + W  +L
Sbjct: 331 ALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVL 364



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 33/237 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   D  L    +L+ +Y+R G V SAE +F TMP    VS   M+   A+ G      
Sbjct: 450 IRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHG------ 503

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG+  +A+ LF +M+ E + P+ +T + +L+AC   G
Sbjct: 504 -----------------------HGV--KAIELFEQMMKEDILPDRITFLTILTACNHAG 538

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ GR     +     I         LI++  + G    A+ V   +  +    +W ++
Sbjct: 539 LIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEAL 598

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           + G  +HG  +  +Q  + +  + +   D T+I L +  A  G  +E  R    M++
Sbjct: 599 LAGCRIHGNMELGIQAADRLLEL-IPGQDGTYIILSNMYAALGQWDEVARVRLLMRE 654



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
            R +H++I  S   K N  +   LIN+Y K  ++  AR +FD++   D+V   +++  Y+
Sbjct: 24  ARAVHAHILTS-GFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 186 MHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             G  K A QLFN     IR     +++  +++A +H    +     F  MK  Y   P 
Sbjct: 83  SSGNVKLAQQLFNATPLTIR---DTVSYNAMITAYSHGNDGHAALNLFVQMK-RYGFLPD 138

Query: 245 VEHYGCMVNLLS 256
              +  +++ LS
Sbjct: 139 PFTFSSVLSALS 150


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/477 (42%), Positives = 307/477 (64%), Gaps = 1/477 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  +  L V+ +LV  Y++ G++  A ++F  M  + +VS  T+L+ Y +   +  A  +
Sbjct: 327 FVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F++M  K+ + W VM+ GY   G A +AL LF +M +E V+P + T    ++ACG++GAL
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGAL 446

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + G+ +H +I      + +   G ALI MY++CG++K+A L+F  + + D V WN+MI  
Sbjct: 447 KHGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISA 505

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
              HG G++AL+LF+ M    + P  I+F+ +L+AC H+GLV+EG R+F +MK ++ I P
Sbjct: 506 LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIP 565

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
             +HY  +++LL RAG++ EA  L+  M  EP   +W  +L  CR  G++ LG   A+ L
Sbjct: 566 GEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
                 + GTY+LLSN Y+A G W   ARVR LM+++GV+KEPGCS IE  NKVH FL G
Sbjct: 626 FKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVG 685

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D +HP++ E+Y  LE +   ++  GYVP T++VLHD+   QK++ L  HSE+LAV FGL+
Sbjct: 686 DTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLL 745

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +  PG ++ ++KNLR+C DCHA    +SK  GR+I++RD  RFHHF +G CSCG+YW
Sbjct: 746 NLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 160/320 (50%), Gaps = 39/320 (12%)

Query: 10  LYVSTSLVDLYARGGD---VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           L V  +LV LY +         A K+   MP +  ++ TTM+  Y ++G+V AAR +F++
Sbjct: 194 LSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEE 253

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ++ K  V WN MI GY   G+A EA  LFRRM+ E+V  +E T  +VLSAC  +G    G
Sbjct: 254 VDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHG 313

Query: 127 RWIHSYI---ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---- 179
           + +H  I   + +   +  + V  AL+  YSKCG++  AR +FD +  KDVV WN+    
Sbjct: 314 KSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSG 373

Query: 180 ---------------------------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
                                      M+ GY   GF +DAL+LFN+M    +KP D T+
Sbjct: 374 YVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTY 433

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            G ++AC   G +  G++    +  +   E        ++ + +R G V+EA+ + + M 
Sbjct: 434 AGAIAACGELGALKHGKQLHGHIV-QLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP 492

Query: 273 IEPDSVLWGTLLGACRLHGN 292
              DSV W  ++ A   HG+
Sbjct: 493 -NIDSVSWNAMISALGQHGH 511



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 46/316 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME-- 68
           +++  L+ LY    D+ +A  LF   P    VS T+++  YA    + AA   FD +   
Sbjct: 60  HLTLRLIHLYTLSRDLPAAATLFCADP--CPVSATSLVAAYAAADRLPAAVSFFDAVPPA 117

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIG--ALES 125
            +D V  N +I  YA+   A  A+ +FR +LA   + P++ +  A+LSA G +   ++  
Sbjct: 118 RRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRH 177

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKC----------------------------- 156
              +H  +  S      + V  AL+ +Y KC                             
Sbjct: 178 CAQLHCSVLKS-GAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVV 236

Query: 157 -----GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                G +  AR VF+ V+ K  VVWN+MI GY   G   +A +LF  M   R+   + T
Sbjct: 237 GYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFT 296

Query: 212 FIGLLSACAHAGLVNEGRRFFNT---MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           F  +LSACA+ GL   G+        ++  +  E  +     +V   S+ G +  A ++ 
Sbjct: 297 FTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIF 356

Query: 269 MDMKIEPDSVLWGTLL 284
            +M ++ D V W T+L
Sbjct: 357 DNMTLK-DVVSWNTIL 371


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/494 (44%), Positives = 319/494 (64%), Gaps = 29/494 (5%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEE 69
           +S+V  Y R   +   E +   + +R L +       ++  Y++ G++  ++ +FD ME+
Sbjct: 323 SSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMED 382

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK--------------VEPNEVTAVAV 113
           +D+V WN +I  Y   G +++AL+L   M  + EK               +PN +T + V
Sbjct: 383 RDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTV 442

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVN-VQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           L  C  + AL  G+ IH+Y    RN+  + V VG+AL++MY+KCG L  AR VFD++  +
Sbjct: 443 LPGCASLSALAKGKEIHAYA--IRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR 500

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-----RLKPSDITFIGLLSACAHAGLVNE 227
           +V+ WN +I+ Y MHG GK++L+LF +M         +KP+++TFI L ++C+H+G+V+E
Sbjct: 501 NVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDE 560

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGA 286
           G   F+ MK+E+ IEP  +HY C+V+L+ RAG+VEEAY LV  M    D V  W +LLGA
Sbjct: 561 GLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGA 620

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR++ NI +GE  AE L+      +  YVLLSNIY++ G WD    +R  MK  GV+KEP
Sbjct: 621 CRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEP 680

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           GCS IE  ++VH+FLAGDL HP+S++++  LE ++  LK EGYVP T  VLHDI E++K+
Sbjct: 681 GCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKE 740

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSEKLA+AFG+++T PGT+I++ KNLRVC DCH   K ISK   R+I++RD  RF
Sbjct: 741 TILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRF 800

Query: 467 HHFVNGTCSCGDYW 480
           HHF +GTCSCGDYW
Sbjct: 801 HHFKDGTCSCGDYW 814



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 7/245 (2%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S   ++  YAK G +  A+ L    E++D+V WN MI  ++Q+    EAL+  R M+ E 
Sbjct: 152 SNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEG 211

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V+P+ VT  +VL AC  +  L +G+ IH+Y   + ++  N  VG+AL++MY  CG ++  
Sbjct: 212 VKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESG 271

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           RLVFD V D+ + +WN+MI GYA     + AL LF EM       S+ T    +S+   A
Sbjct: 272 RLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNAT---TMSSIVPA 328

Query: 223 GLVNEG---RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
            +  EG   +   +    +  +E        ++++ SR G ++ + K + D   + D V 
Sbjct: 329 YVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTS-KRIFDSMEDRDIVS 387

Query: 280 WGTLL 284
           W T++
Sbjct: 388 WNTII 392



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 68/365 (18%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V ++LVD+Y   G V S                                R++FD + ++
Sbjct: 253 FVGSALVDMYCNCGQVES-------------------------------GRLVFDSVLDR 281

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
            +  WN MI GYAQ     +AL+LF  M  A  +  N  T  +++ A  +   +     I
Sbjct: 282 KIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGI 341

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H Y+   R ++ N  +  ALI+MYS+ G +K ++ +FD + D+D+V WN++I  Y + G 
Sbjct: 342 HGYVIK-RGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400

Query: 190 GKDALQLFNEMCRIR----------------LKPSDITFIGLLSACAHAGLVNEGRRFFN 233
             DAL L +EM RI                  KP+ IT + +L  CA    + +G+    
Sbjct: 401 SSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIH- 459

Query: 234 TMKDEYAIE----PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
                YAI      +V     +V++ ++ G +  A ++   M I  + + W  ++ A  +
Sbjct: 460 ----AYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGM 514

Query: 290 HGNIALGEKIAEYLISQNLANSG----TYVLLSNIYAAIGNW----DGVARVRTLMKEKG 341
           HG      ++ E ++++  A  G    T V    ++A+  +     +G++    +  E G
Sbjct: 515 HGKGKESLELFEDMVAEG-AKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHG 573

Query: 342 VQKEP 346
           ++  P
Sbjct: 574 IEPAP 578



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 6/244 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y K G +  A  +FD + E+D V WN +I    +      A+  FR ML E  EP
Sbjct: 52  TLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEP 111

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENS--RNIKVNVQVGTALINMYSKCGSLKDAR 163
           +  T V++  AC  +     G W+   I     R          AL+ MY+K G L DA+
Sbjct: 112 SSFTLVSMALACSNLRK-RDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAK 170

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +     D+D+V WNSMI  ++ +    +AL     M    +KP  +TF  +L AC+H  
Sbjct: 171 SLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLD 230

Query: 224 LVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           L+  G+      ++ +  IE        +V++    GQVE   +LV D  ++    LW  
Sbjct: 231 LLRTGKEIHAYALRTDDVIENSFVG-SALVDMYCNCGQVESG-RLVFDSVLDRKIGLWNA 288

Query: 283 LLGA 286
           ++  
Sbjct: 289 MIAG 292



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 38/267 (14%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKC 156
           M+     P+     AVL A   I  L  G+ IH+++ +       +V +   L+NMY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L DA  VFDR+ ++D V WNS+I         + A++ F  M     +PS  T + + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 217 SACA--------------HAGLVNEGR-RFF--NTMKDEYAIEPKVEH------------ 247
            AC+              H     +G  R F  N +   YA   +++             
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 248 ---YGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAE 301
              +  M++  S+  +  EA   +  M +E   PD V + ++L AC     +  G++I  
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA 240

Query: 302 YLISQN--LANSGTYVLLSNIYAAIGN 326
           Y +  +  + NS     L ++Y   G 
Sbjct: 241 YALRTDDVIENSFVGSALVDMYCNCGQ 267


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/435 (46%), Positives = 296/435 (68%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L+ Y   G+  AA+VLFD ME + +V WNVMI GY+Q+GL +EA+ LFR+ML++ ++P
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            E+  + V  AC Q+ AL  G+ +H +   + ++  ++ V +++I+MY+K G +  ++ +
Sbjct: 410 YEIAIMCVCGACSQLSALRLGKELHCFALKA-HLTEDIFVSSSIIDMYAKGGCIGLSQRI 468

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR+ +KDV  WN +I GY +HG GK+AL+LF +M R+ LKP D TF G+L AC+HAGLV
Sbjct: 469 FDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLV 528

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +G  +FN M + + IEPK+EHY C+V++L RAG++++A +L+ +M  +PDS +W +LL 
Sbjct: 529 EDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLS 588

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           +CR+HGN+ LGEK+A  L+         YVL+SN++A  G WD V RVR  MK+ G+QK+
Sbjct: 589 SCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKD 648

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
            GCS IE+  KVH FL GD   P+ +E+      +   + + GY P T  VLHD+ E+ K
Sbjct: 649 AGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDK 708

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
              L  HSEKLA++FGL++T  G  +++ KNLR+C DCH   K ISK   R I++RD  R
Sbjct: 709 IGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKR 768

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G CSCGDYW
Sbjct: 769 FHHFRDGICSCGDYW 783



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 125/248 (50%), Gaps = 4/248 (1%)

Query: 45  TTMLTCYAKQGEVA-AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
             ++  Y K G V  A + +FD M+ K V  WN ++ GYAQ+    +AL L+ +M    +
Sbjct: 247 NALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGL 306

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T  ++L AC ++ +L  G  IH +   +  + V+  +G +L+++Y  CG    A+
Sbjct: 307 DPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN-GLAVDPFIGISLLSLYICCGKPFAAQ 365

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++FD +  + +V WN MI GY+ +G   +A+ LF +M    ++P +I  + +  AC+   
Sbjct: 366 VLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLS 425

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G+         +  E  +     ++++ ++ G +  + + + D   E D   W  +
Sbjct: 426 ALRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQR-IFDRLREKDVASWNVI 483

Query: 284 LGACRLHG 291
           +    +HG
Sbjct: 484 IAGYGIHG 491



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 35/239 (14%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L +D++VS+S++D+YA+GG +         + QR                     
Sbjct: 437 ALKAHLTEDIFVSSSIIDMYAKGGCI--------GLSQR--------------------- 467

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +FD + EKDV  WNV+I GY  HG   EAL LF +ML   ++P++ T   +L AC   
Sbjct: 468 --IFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 525

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G +E G    + + N  NI+  ++  T +++M  + G + DA RL+ +   D D  +W+S
Sbjct: 526 GLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSS 585

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           ++    +HG      ++ N++  +   KP +   I  L   A +G  ++ RR    MKD
Sbjct: 586 LLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLF--AGSGKWDDVRRVRGRMKD 642



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 39/335 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           T ++T Y+  G  + +R++FD +  K++  WN ++  Y ++ L  +A+ +F  +++  + 
Sbjct: 145 TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 204

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
           +P+  T   V+ AC  +  L  G+ IH  +    ++  +V VG ALI MY KCG +++A 
Sbjct: 205 KPDNFTLPCVIKACAGLLDLGLGQIIHG-MATKMDLVSDVFVGNALIAMYGKCGLVEEAV 263

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD ++ K V  WN+++ GYA +   + AL L+ +M    L P   T   LL AC+  
Sbjct: 264 KRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 323

Query: 223 GLVNEGRRFFN-TMKDEYAIEPKV------------------------EH-----YGCMV 252
             ++ G       +++  A++P +                        EH     +  M+
Sbjct: 324 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 383

Query: 253 NLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
              S+ G  +EA  L   M    I+P  +    + GAC     + LG+++  + +  +L 
Sbjct: 384 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 443

Query: 310 NSGTYVLLS--NIYAAIGNWDGVARVRTLMKEKGV 342
               +V  S  ++YA  G      R+   ++EK V
Sbjct: 444 ED-IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV 477



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 79  IDGYAQHGLANEALVLFRR----MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           I    + G   EAL   +R    ++ +  + +E   V +L ACGQ   +E GR +H  + 
Sbjct: 74  IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGV-LLQACGQRKDIEVGRRLHEMVS 132

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            S     +  + T +I MYS CGS  D+R+VFD++  K++  WN+++  Y  +   +DA+
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192

Query: 195 QLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGR-RFFNTMKDEYAIEPKVEHYGCMV 252
            +F+E+  +   KP + T   ++ AC  AGL++ G  +  + M  +  +   V     ++
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNALI 250

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +  + G VEEA K V D+        W  LL
Sbjct: 251 AMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/461 (46%), Positives = 302/461 (65%), Gaps = 3/461 (0%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           R GDV  A+ +F  MP R+L S   ML  YAK GE+  AR +F +M  +D V W+ MI G
Sbjct: 181 RCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVG 240

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           +A +G  +EA   FR +L E++  NEV+   VLSAC Q GA E G+ +H ++E +  + V
Sbjct: 241 FAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYV 300

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
              V  ALI+ YSKCG++  ARLVF  +   + +V W S+I G AMHG G++A+QLF+EM
Sbjct: 301 G-SVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEM 359

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
               ++P  ITFI LL AC+H+GLV EG   F+ MK+ Y IEP +EHYGCMV+L  RA +
Sbjct: 360 EESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAAR 419

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           +++AY+ + +M + P++++W TLLGAC +HGNI + E +   L   +  NSG +VLLSN+
Sbjct: 420 LQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNV 479

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           YA  G W  V+ +R  M E  ++K PG S IE+   ++ F+AG+  +  ++E +  L EI
Sbjct: 480 YAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREI 539

Query: 381 NGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
              L+ E GY PQ + VLHDI E++K++S+  HSEKLA AFG+     G  ++IVKNLRV
Sbjct: 540 MLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRV 599

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH V KLISK    +I++RDR+RFH F +G CSC DYW
Sbjct: 600 CGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/477 (42%), Positives = 307/477 (64%), Gaps = 6/477 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L   T+++  Y+  GDV+ A++ F +MP+R L++ T ML+ YA  G +   R +F  M 
Sbjct: 177 NLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMP 236

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRM-----LAEKVEPNEVTAVAVLSACGQIGAL 123
           E+D++ W  M+    ++ L  E+  LF RM     L++ + PN VT + +L AC  +GAL
Sbjct: 237 ERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGAL 296

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
             GR IH+ +   R    ++ V  AL+N Y +CG+L DA++VFD +  +DV+ W+SMI  
Sbjct: 297 AEGRKIHAAVAE-RGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISA 355

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
           +A  G   +A++L++ M      P DI FI +L AC+++G+V     FF ++  +  +EP
Sbjct: 356 FAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEP 415

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            +EHY CMV++L RAG++ +A  L+  M   P  +L+ T+L AC+L+ ++  GE  AE +
Sbjct: 416 TLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVV 475

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
              +  NS  Y+ L+NIY+A       AR+R LM+E+G++K+PGCS IE+ ++VHEF+AG
Sbjct: 476 FELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAG 535

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP+  EIY  ++ +   +K  GY   T++VL D+ E +K+N L  HSEKLA+AFGLI
Sbjct: 536 DKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLI 595

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ST PG  ++IVKNLRVC DCHA  K+ISK TGR+I++RD NRFHHF NG CSC DYW
Sbjct: 596 STPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 34/342 (9%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D+D +    ++ +YAR GD+ +A+ +F  MP+ SL S T +L+ +A  G    A+ LFD 
Sbjct: 20  DRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDT 79

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M+E+D++ W +M+   A      +A   F +M     E + V   A+L+A  + G +E+ 
Sbjct: 80  MQERDLIAWTIMLTVLATFSNIEDAKYHFDQM----PERDLVAWTAMLAANAERGQMENA 135

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R     +        N+   T+L++ Y + G +K A  VFD + + ++V W +M+ GY++
Sbjct: 136 RETFDQMPER-----NLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSL 190

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
            G    A + F+ M    L    I +  +LSA A  G +   R  F  M +   I     
Sbjct: 191 SGDVVRAKRAFDSMPERDL----IAWTAMLSAYAFNGHLRYTREIFQRMPERDLIS---- 242

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMK--------IEPDSVLWGTLLGACRLHGNIALGEK 298
            +  MV  L     +EE+ +L   M         + P+ V + TLL AC   G +A G K
Sbjct: 243 -WATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRK 301

Query: 299 I----AEYLISQNLANSGTYVLLSNIYAAIGN----WDGVAR 332
           I    AE     +L  S   V       A+G+    +DG+ R
Sbjct: 302 IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRR 343


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/474 (45%), Positives = 303/474 (63%), Gaps = 1/474 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +K+    +++V  Y   GD+ +A + F   P RS+++ T M+T Y K G V  A  LF +
Sbjct: 163 EKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQE 222

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  + +V WN MI GY ++G A + L LFR ML   V+PN ++  +VL  C  + AL+ G
Sbjct: 223 MSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLG 282

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + +H  +     +  +   GT+L++MYSKCG LKDA  +F ++  KDVV WN+MI GYA 
Sbjct: 283 KQVHQLVCKC-PLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQ 341

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG GK AL+LF+EM +  LKP  ITF+ +L AC HAGLV+ G ++FNTM+ ++ IE K E
Sbjct: 342 HGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPE 401

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CMV+LL RAG++ EA  L+  M  +P   ++GTLLGACR+H N+ L E  A+ L+  
Sbjct: 402 HYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLEL 461

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           +   +  YV L+N+YAA   WD VA +R  MK+  V K PG S IE+++ VH F + D  
Sbjct: 462 DPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRL 521

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+   I+  L+++   +K  GYVP  + VLHD+GE+ K+  L  HSEKLA+AFGL+   
Sbjct: 522 HPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVP 581

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G  I++ KNLRVC DCH+  K IS   GR+I++RD  RFHHF +G CSC DYW
Sbjct: 582 LGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 159/332 (47%), Gaps = 23/332 (6%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           + G    A +LF  +PQ + VS   ML C+     V  AR  FD M  KDV  WN MI  
Sbjct: 85  KPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISA 144

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS---ACGQI-GALESGRWIHSYIENSR 137
            AQ GL  EA    RR+ +   E N V+  A++S   ACG +  A+E       Y    R
Sbjct: 145 LAQVGLMGEA----RRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVEC-----FYAAPMR 195

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
               +V   TA+I  Y K G ++ A  +F  ++ + +V WN+MI GY  +G  +D L+LF
Sbjct: 196 ----SVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLF 251

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
             M    +KP+ ++   +L  C++   +  G++  + +  +  +         +V++ S+
Sbjct: 252 RTMLETGVKPNALSLTSVLLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSK 310

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTY 314
            G +++A++L + +    D V W  ++     HG      ++ + +  + L     +   
Sbjct: 311 CGDLKDAWELFIQIP-RKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVA 369

Query: 315 VLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           VLL+  +A + +  GV    T+ ++ G++ +P
Sbjct: 370 VLLACNHAGLVDL-GVQYFNTMRRDFGIETKP 400



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 31/160 (19%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  D    TSLV +Y++ GD+  A +LF  +P++ +V    M++ YA+ G    A  
Sbjct: 291 KCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALR 350

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD+M++                               E ++P+ +T VAVL AC   G 
Sbjct: 351 LFDEMKK-------------------------------EGLKPDWITFVAVLLACNHAGL 379

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           ++ G    + +     I+   +    ++++  + G L +A
Sbjct: 380 VDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEA 419



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 16/172 (9%)

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           +++ S+         NV     LI  Y +CG +  A  VF+ +  K  V WNS++  +A 
Sbjct: 25  KYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAK 84

Query: 187 H-GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
             G  + A QLF ++     +P+ +++  +L+   H   V++ R FF++M  +      V
Sbjct: 85  KPGHFEYARQLFEKI----PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK-----DV 135

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
             +  M++ L++ G + EA +L   M  E + V W  ++      G +A G+
Sbjct: 136 ASWNTMISALAQVGLMGEARRLFSAMP-EKNCVSWSAMVS-----GYVACGD 181


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/472 (46%), Positives = 298/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLV--SLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V  +L+ +Y+R G V +A +L      + L     T +L  Y K G++  A+ +FD +++
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKD 375

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY QHGL  EA+ LFR M+ E+  PN  T  A+LS    + +L  G+ I
Sbjct: 376 RDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQI 435

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S  I  +V V  ALI MY+K GS+  A   FD +  ++D V W SMI+  A HG
Sbjct: 436 HGSAVKSGEI-YSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHG 494

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             ++AL+LF  M    L+P  IT++G+ SAC HAGLVN+GR++F+ MKD   I P + HY
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+L  RAG ++EA + +  M IEPD V WG+LL ACR++ NI LG+  AE L+    
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEP 614

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  L+N+Y+A G W+  A++R  MK+  V+KE G S IE+ +KVH F   D  HP
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHP 674

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +  EIY+ +++I   +K  GYVP T  VLHD+ E+ K+  L  HSEKLA+AFGLIST   
Sbjct: 675 QKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDK 734

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH   K ISK  GR+I++RD  RFHHF +G CSC DYW
Sbjct: 735 TTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 168/334 (50%), Gaps = 50/334 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L   +Y+  +L+++Y++ G  L A KLF  MP R+  S  T+L+ YAK+G++ ++ 
Sbjct: 41  IKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSC 100

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             FD + ++D V W  MI GY   G  ++A+ +   M+ E +EP++ T   VL++     
Sbjct: 101 EFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATR 160

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------- 168
            LE+G+ +HS+I     ++ NV V  +L+NMY+KCG    A++VFDR             
Sbjct: 161 CLETGKKVHSFIVK-LGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMI 219

Query: 169 ------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD 209
                             + ++D+V WNSMI GY   G+   AL +F++M R   L P  
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDR 279

Query: 210 ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            T   +LSACA+   +  G +   + +   + I   V     ++++ SR G VE A +L+
Sbjct: 280 FTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLI 337

Query: 269 -----MDMKIEPDSVLWGTLLGACRLHGNIALGE 297
                 D+KIE  + L         L G I LG+
Sbjct: 338 EQRGTKDLKIEGFTAL---------LDGYIKLGD 362


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/437 (46%), Positives = 292/437 (66%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y K G V  A  +F++    D+V +  ++  YAQ G   EAL L+  M    +
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+     ++L+AC  + A E G+ +H +I        ++  G +L+NMY+KCGS++DA 
Sbjct: 411 KPDSFVCSSLLNACASLSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDAS 469

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             F R+  + +V W++MI G A HG+GK+ALQLF +M ++ + P+ IT + +L AC HAG
Sbjct: 470 CAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAG 529

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV E + +FN+MK  + IEP  EHY CM++LL RAG++E A +LV  M  + ++++WG L
Sbjct: 530 LVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGAL 589

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGA R+H NI LGE+ AE L++     SGT+VLL+NIYA++G WD VARVR LMK+  V+
Sbjct: 590 LGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVK 649

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPG S +E+ +KV+ F+ GD  H +S EIY  L+E++  LK  GYVP  +I LHD+   
Sbjct: 650 KEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERS 709

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  L  HSEKLAVAFGLI+T PG  I++ KNLR+C DCH V K ISK   R+I++RD 
Sbjct: 710 EKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDT 769

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G+CSCG+YW
Sbjct: 770 NRFHHFREGSCSCGEYW 786



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 11/244 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++  YAK G    AR LFD + ++ VV WN +   Y    +  EA+ LF  M+   + 
Sbjct: 49  NSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIR 108

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLK 160
           PNE +  ++++ C  +     GR IH Y+     IK+    +     AL++MY+K G L+
Sbjct: 109 PNEFSLSSMINVCTGLEDSVQGRKIHGYL-----IKLGYDSDAFSANALVDMYAKVGILE 163

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  VFD +   D+V WN++I G  +H +   AL+L  EM +  + P+  T    L ACA
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
              L   GR+  +++             G ++++ S+   +++A +LV  +  E D + W
Sbjct: 224 GMALRELGRQLHSSLIKMDMGSDSFLGVG-LIDMYSKCNSMDDA-RLVFKLMPERDMIAW 281

Query: 281 GTLL 284
             ++
Sbjct: 282 NAVI 285



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 134/278 (48%), Gaps = 34/278 (12%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S   ++  YAK G +  A  +FD++ + D+V WN +I G   H   + AL L R M    
Sbjct: 148 SANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSG 207

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + PN  T  + L AC  +   E GR +HS +    ++  +  +G  LI+MYSKC S+ DA
Sbjct: 208 MCPNMFTLSSALKACAGMALRELGRQLHSSLIK-MDMGSDSFLGVGLIDMYSKCNSMDDA 266

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-- 220
           RLVF  + ++D++ WN++I G++ +   ++A  LF  M    +  +  T   +L + A  
Sbjct: 267 RLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAAL 326

Query: 221 ---------HAGLVNEGRRF----FNTMKDEYAIEPKVEH---------------YGCMV 252
                    HA  +  G  F     N++ D Y     VE                +  +V
Sbjct: 327 QANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLV 386

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGAC 287
              ++ GQ EEA +L ++M+   I+PDS +  +LL AC
Sbjct: 387 TAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC 424



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 15/251 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K   +  AR++F  M E+D++ WN +I G++Q+    EA  LF  M  E +  N
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFN 312

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + T   VL +   + A    R IH+    S   + +  V  +LI+ Y KCG ++DA  VF
Sbjct: 313 QTTLSTVLKSIAALQANYMCRQIHALSLKS-GFEFDNYVVNSLIDTYGKCGHVEDATRVF 371

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +     D+V++ S++  YA  G G++AL+L+ EM    +KP       LL+ACA      
Sbjct: 372 EESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYE 431

Query: 227 EGRRF------FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           +G++       F  M D +A          +VN+ ++ G +E+A      + +    V W
Sbjct: 432 QGKQVHVHILKFGFMSDIFA-------GNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSW 483

Query: 281 GTLLGACRLHG 291
             ++G    HG
Sbjct: 484 SAMIGGLAQHG 494



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           ++ NE    +VL AC     L  G+ +H  +  +     +  V  +L+ +Y+KCG   DA
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVT-GFDSDEFVANSLVILYAKCGGFGDA 64

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R +FD + D+ VV WN++   Y       +A+ LF++M    ++P++ +   +++ C   
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
               +GR+    +  +   +        +V++ ++ G +E+A   V D   +PD V W  
Sbjct: 125 EDSVQGRKIHGYLI-KLGYDSDAFSANALVDMYAKVGILEDASS-VFDEIAKPDIVSWNA 182

Query: 283 LLGACRLH 290
           ++  C LH
Sbjct: 183 IIAGCVLH 190


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/435 (48%), Positives = 301/435 (69%), Gaps = 4/435 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GEV  A  LFD +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQ-VGTALINMYSKCGSLKD 161
            PN+VT +++L AC  +GA++ GRWIH YI    + +  NV  + T+LI+MY+KCG +  
Sbjct: 320 TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDA 379

Query: 162 ARLVFDR-VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           A+ VFD  ++++ +  WN+MI G+AMHG    A  +F+ M    ++P DITF+GLLSAC+
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+G+++ GR  F +M   Y I PK+EHYGCM++LL  +G  +EA +++  M +EPD V+W
Sbjct: 440 HSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 499

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            +LL AC++HGN+ LGE  A+ LI     NSG+YVLLSNIYAA G W+ VA++R L+ +K
Sbjct: 500 CSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDK 559

Query: 341 GVQKE-PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           G++K+ PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL +
Sbjct: 560 GMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 619

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + E+ ++ +L  HSEKLA+AFGLIST+PGT + I+KNLRVC +CH   KLISK   R+I+
Sbjct: 620 MEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREII 679

Query: 460 MRDRNRFHHFVNGTC 474
            RDR RF HF +G C
Sbjct: 680 ARDRTRFXHFRDGVC 694



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 39/336 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D+YV TSL+ +YA+ G +  A K+F     R +VS T ++  Y  +G + +A+
Sbjct: 116 LKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQ 175

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR-MLAEKVEPNEVTAVAVLSACGQI 120
            LFD++  KDVV WN MI GY + G   EAL LF+  M+   V P+E T V V+SAC Q 
Sbjct: 176 KLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQS 235

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            ++E GR +HS+I N      N+++  ALI++YSK G ++ A  +FD + +KDV+ WN++
Sbjct: 236 DSIELGRHVHSWI-NDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTL 294

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR----------- 229
           I GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR           
Sbjct: 295 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLK 354

Query: 230 -------RFFNTMKDEYA----------------IEPKVEHYGCMVNLLSRAGQVEEAYK 266
                      ++ D YA                    +  +  M++  +  G+   A+ 
Sbjct: 355 GVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFD 414

Query: 267 LVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
           +   M+   IEPD + +  LL AC   G + LG  I
Sbjct: 415 IFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNI 450



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 126/256 (49%), Gaps = 35/256 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +FD ++E +++ WN M  G+A       AL L+  M++  + P+  T   +L +C +   
Sbjct: 45  VFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKI 104

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV----------------- 165
            + G+ IH ++       +++ V T+LI+MY++ G L+DAR V                 
Sbjct: 105 RKEGQQIHGHVLK-LGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIA 163

Query: 166 --------------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDI 210
                         FD +  KDVV WN+MI GY   G  K+AL+LF EM  +  ++P + 
Sbjct: 164 GYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDES 223

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           T + ++SACA +  +  GR   + + D +     ++    +++L S+ G+VE A +L  D
Sbjct: 224 TMVTVVSACAQSDSIELGRHVHSWIND-HGFASNLKIVNALIDLYSKFGEVETACEL-FD 281

Query: 271 MKIEPDSVLWGTLLGA 286
                D + W TL+G 
Sbjct: 282 GLWNKDVISWNTLIGG 297



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 103/210 (49%), Gaps = 19/210 (9%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + + ++++WN+M  G+A+      AL+L+  M  + L P   TF  LL +CA + +
Sbjct: 45  VFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKI 104

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG++   + +K  + ++  V  +  ++++ ++ G++E+A K V D+    D V +  L
Sbjct: 105 RKEGQQIHGHVLKLGFDLDIYV--HTSLISMYAQNGRLEDARK-VFDISSHRDVVSYTAL 161

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMKEKGV 342
           +      G I   +K+ + +  +++ +    +   + Y   GN+ + +   + +M    V
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMI---SGYVETGNYKEALELFKEMMMMTNV 218

Query: 343 QKE--------PGCS---SIELSNKVHEFL 361
           + +          C+   SIEL   VH ++
Sbjct: 219 RPDESTMVTVVSACAQSDSIELGRHVHSWI 248


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/437 (47%), Positives = 295/437 (67%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L  ++  YA  G +  A V+FD+M E D   W+ M+ GY+Q+G A E L L R M AE V
Sbjct: 105 LNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENV 164

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T  +V+  CG +G L+ G+W+HSYI+    +K++V +GTAL+ MYSKCGSL +A 
Sbjct: 165 SSDAFTLASVVGVCGDLGVLDLGKWVHSYIDK-EGVKIDVVLGTALVGMYSKCGSLDNAL 223

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  + ++DV  W+ MI GYA+HG  + ALQLF+ M R ++ P+ +TF  +LSA +H+G
Sbjct: 224 KVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSG 283

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV +G + F TM  EY I P+++HYGCMV+L  RAG V  A+K +  M IEP+ VLW TL
Sbjct: 284 LVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTL 343

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC+ HG   LGE I+  ++  + ++   YV +SN+YA++G W  V +VR+LMKEK  +
Sbjct: 344 LGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPK 403

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+ G SSIE++  VH+F+ G+  HPK ++IY ML ++   LK  G+V  T  VLHDI E+
Sbjct: 404 KQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGHVASTVDVLHDIDEE 463

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ +L +HSE+LA+A+GL+ T  G+ I+IVKNLR C DCH V KLIS+   R+I++RDR
Sbjct: 464 EKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKLISEVYNREIILRDR 523

Query: 464 NRFHHFVNGTCSCGDYW 480
             FHHF    CSC DYW
Sbjct: 524 VCFHHFRERGCSCNDYW 540



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           +  G VA A  +F      ++  WN +I GY+       A+ L++ M    + PN  T  
Sbjct: 12  SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            VL+AC ++  L  G+ +HS I  +  +     +   LI +Y+ CG +  A ++FD + +
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVKA-GLDFETPLLNGLIKLYAACGCMDYACVMFDEMPE 130

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            D   W++M+ GY+ +G   + L+L  EM    +     T   ++  C   G+++ G ++
Sbjct: 131 PDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KW 189

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            ++  D+  ++  V     +V + S+ G ++ A K+   M  E D   W  ++    +HG
Sbjct: 190 VHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMA-ERDVTTWSIMIAGYAIHG 248

Query: 292 N 292
           +
Sbjct: 249 H 249



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ + T+LV +Y++ G + +A K+F  M +R + + + M+  YA  G    A  LFD M+
Sbjct: 202 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMK 261

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
              ++                               PN VT  +VLSA    G +E G  
Sbjct: 262 RSKII-------------------------------PNCVTFTSVLSAYSHSGLVEKGHQ 290

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
           I   +     I   ++    +++++ + G +  A + +     + +VV+W +++     H
Sbjct: 291 IFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTH 350

Query: 188 GF 189
           G+
Sbjct: 351 GY 352


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/482 (43%), Positives = 311/482 (64%), Gaps = 3/482 (0%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            V+ +++++  +   LVD+YA+ G +  A K++    ++ ++    M++ +   G    A+
Sbjct: 607  VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAK 666

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             LFD ME+++   WN ++ GYA  GL  E+   F  ML   +E + +T V +++ C  + 
Sbjct: 667  NLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLP 726

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            ALE G  +HS I     +  +V + TAL++MYSKCG++  AR VFD +N K++V WN+MI
Sbjct: 727  ALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMI 786

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             GY+ HG  K+AL L+ EM +  + P+++TF+ +LSAC+H GLV EG R F +M+++Y I
Sbjct: 787  SGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNI 846

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            E K EHY CMV+LL RAG++E+A + V  M IEP+   WG LLGACR+H ++ +G   A+
Sbjct: 847  EAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQ 906

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L   +  N G YV++SNIYAA G W  V  +R +MK KGV+K+PG S IE+++++  F 
Sbjct: 907  RLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFH 966

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH---DIGEKQKQNSLEVHSEKLAV 418
            AG   HPK++EIY  L  +    K  GY+P T  +L    DI E++++  L  HSE+LA+
Sbjct: 967  AGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLAL 1026

Query: 419  AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
            + GLIS    ++I++ KNLR+C DCH   K ISK TGR+I+ RD NRFHHF NG CSCGD
Sbjct: 1027 SLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGD 1086

Query: 479  YW 480
            YW
Sbjct: 1087 YW 1088



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 154/290 (53%), Gaps = 17/290 (5%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +F+L   L  S  L D+  +G ++     L   +    ++  + ++  Y+K G V  A  
Sbjct: 377 RFNLGSILMASAGLADI-GKGRELHG--HLVRNLLNSDIILGSALVDMYSKCGMVEEAHQ 433

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIG 121
           +F  + E++ V +N ++ GY Q G A EAL L+  M +E  ++P++ T   +L+ C    
Sbjct: 434 VFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQR 493

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
               GR IH+++  + NI  N+ V T L++MYS+CG L  A+ +F+R+ +++   WNSMI
Sbjct: 494 NDNQGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 552

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-----NTMK 236
            GY  +G  ++AL+LF +M    +KP   +   +LS+C       +GR        NTM+
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +E  ++        +V++ ++ G ++ A+K V D  I+ D +L   ++ A
Sbjct: 613 EEGILQV------VLVDMYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSA 655



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 189/407 (46%), Gaps = 57/407 (14%)

Query: 19  LYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
           L +R G      KL A   +        ++  YAK  +  +   +FD+M E++ V WN +
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 348

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           I   AQ G  N+ALVLF RM     + N     ++L A   +  +  GR +H ++   RN
Sbjct: 349 ISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHL--VRN 406

Query: 139 -IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
            +  ++ +G+AL++MYSKCG +++A  VF  + +++ V +N+++ GY   G  ++AL+L+
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 198 NEM-CRIRLKPSDITFIGLLSACA-----------HAGLV-------------------- 225
           ++M     ++P   TF  LL+ CA           HA L+                    
Sbjct: 467 HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE 526

Query: 226 ----NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSV 278
               N  +  FN M +  A       +  M+    + G+ +EA +L   M+   I+PD  
Sbjct: 527 CGRLNYAKEIFNRMAERNAYS-----WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCF 581

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARVRTLM 337
              ++L +C    +   G ++  +++   +   G   V+L ++YA  G+ D   +V    
Sbjct: 582 SLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVY--- 638

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
            ++ ++K+   +++ +S  V+   A D     +K ++  +E+ N  L
Sbjct: 639 -DQTIKKDVILNNVMVSAFVNSGRAND-----AKNLFDQMEQRNTAL 679



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 140/325 (43%), Gaps = 36/325 (11%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA+ G +  A    D++E   VV WN +I GY +     EA  +F RML   V P+  T 
Sbjct: 220 YARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTF 279

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            + L  CG + + + G+ +HS +  +   K +  VG ALI+MY+KC   +    VFD + 
Sbjct: 280 ASALRVCGALRSRDGGKQVHSKLI-ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMG 338

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +++ V WNS+I   A  G   DAL LF  M     K +      +L A A    + +GR 
Sbjct: 339 ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRE 398

Query: 231 FF---------------NTMKDEYAIEPKVEH---------------YGCMVNLLSRAGQ 260
                            + + D Y+    VE                Y  ++    + G+
Sbjct: 399 LHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGK 458

Query: 261 VEEAYKLVMDMK----IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYV 315
            EEA +L  DM+    I+PD   + TLL  C    N   G +I  +LI  N+  N     
Sbjct: 459 AEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVET 518

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEK 340
            L ++Y+  G  +    +   M E+
Sbjct: 519 ELVHMYSECGRLNYAKEIFNRMAER 543



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 14/291 (4%)

Query: 44  LTTMLTCYAKQG---EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +T +L  YA+ G   ++  AR LF++M E+++  WN MI  YA+     E L L+ RM  
Sbjct: 109 MTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRG 168

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
                ++ T  +V+ AC  +  +   R + S +  +  +  N+ VG AL++ Y++ G + 
Sbjct: 169 SGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKA-GLNCNLFVGGALVDGYARFGWMD 227

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA    D +    VV WN++I GY      ++A  +F+ M +I + P + TF   L  C 
Sbjct: 228 DAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCG 287

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
                + G++  + +    A   K + +    ++++ ++    E   K V D   E + V
Sbjct: 288 ALRSRDGGKQVHSKL---IACGFKGDTFVGNALIDMYAKCDDEESCLK-VFDEMGERNQV 343

Query: 279 LWGTLLGACRLHGN----IALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
            W +++ A    G+    + L  ++ E     N  N G+ ++ S   A IG
Sbjct: 344 TWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/451 (47%), Positives = 292/451 (64%), Gaps = 2/451 (0%)

Query: 30  EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
           E++  +  +R +     ++  YAK G V  AR +FD + ++D V WN M+  YAQ+G  +
Sbjct: 183 ERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPD 242

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           E+L L   M A+ V P E T V V+S+   I  L  GR IH +       + N +V TAL
Sbjct: 243 ESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGF-GWRHGFQYNDKVKTAL 301

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           I+MY+KCGS+K A ++F+R+ +K VV WN++I GYAMHG   +AL LF  M +   +P  
Sbjct: 302 IDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMK-EAQPDH 360

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           ITF+G L+AC+   L++EGR  +N M  +  I P VEHY CMV+LL   GQ++EAY L+ 
Sbjct: 361 ITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIR 420

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
            M + PDS +WG LL +C+ HGN+ L E   E LI     +SG YV+L+N+YA  G W+G
Sbjct: 421 QMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEG 480

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389
           VAR+R LM +KG++K   CS IE+ NKV+ FL+GD+ HP S  IY  L+ + G ++  GY
Sbjct: 481 VARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGY 540

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKL 449
           VP T  V HD+ E +K + +  HSE+LA+AFGLIST PGT + I KNLR+C DCH   K 
Sbjct: 541 VPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKF 600

Query: 450 ISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ISK T R+I +RD NR+HHF +G CSCGDYW
Sbjct: 601 ISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 141/272 (51%), Gaps = 5/272 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+    +  A  LFD + + ++  WNV+I  YA +G    A+ L+ +ML   ++
Sbjct: 97  TKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLK 156

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T   VL AC  +  +  GR IH  +  S   + +V VG AL++MY+KCG + DAR 
Sbjct: 157 PDNFTLPFVLKACSALSTIGEGRVIHERVIRS-GWERDVFVGAALVDMYAKCGCVVDARH 215

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++ D+D V+WNSM+  YA +G   ++L L  EM    ++P++ T + ++S+ A    
Sbjct: 216 VFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIAC 275

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  GR       +  +    KV+    ++++ ++ G V+ A  L   ++ E   V W  +
Sbjct: 276 LPHGREIHGFGWRHGFQYNDKVK--TALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAI 332

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
           +    +HG       + E ++ +   +  T+V
Sbjct: 333 ITGYAMHGLAVEALDLFERMMKEAQPDHITFV 364



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 3/187 (1%)

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N     ++L +C    ALE G+ +H+ +     I  N+ + T L+N YS C SL++A  +
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARL-CQLGIAYNLDLATKLVNFYSVCNSLRNAHHL 115

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD++   ++ +WN +I  YA +G  + A+ L+++M    LKP + T   +L AC+    +
Sbjct: 116 FDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTI 175

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGR     +      E  V     +V++ ++ G V +A + V D  ++ D+VLW ++L 
Sbjct: 176 GEGRVIHERVIRS-GWERDVFVGAALVDMYAKCGCVVDA-RHVFDKIVDRDAVLWNSMLA 233

Query: 286 ACRLHGN 292
           A   +G+
Sbjct: 234 AYAQNGH 240



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 41/202 (20%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V T+L+D+YA+ G V  A  LF  + ++ +VS   ++T Y                    
Sbjct: 297 VKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGY-------------------- 336

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                      A HGLA EAL LF RM+ E  +P+ +T V  L+AC +   L+ GR +++
Sbjct: 337 -----------AMHGLAVEALDLFERMMKE-AQPDHITFVGALAACSRGRLLDEGRALYN 384

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV----VWNSMIVGYAMH 187
            +     I   V+  T ++++   CG L +A   +D +   DV+    VW +++     H
Sbjct: 385 LMVRDCRINPTVEHYTCMVDLLGHCGQLDEA---YDLIRQMDVMPDSGVWGALLNSCKTH 441

Query: 188 GFGKDALQLFNEMCRIRLKPSD 209
           G  + A     ++  I L+P D
Sbjct: 442 GNVELAEVALEKL--IELEPDD 461


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/473 (45%), Positives = 315/473 (66%), Gaps = 5/473 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEK-LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           V+ SL+ LY   G +  A + L++      +VS  TM++ Y K G++ AAR +F  M E+
Sbjct: 115 VTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           ++V W+ M+D   + G   EAL +F RM+ E+  P+ V  V+VL AC  +GA+E GRW+H
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234

Query: 131 SYIENSR--NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
            Y+E       + N+ + TAL++MY KCG ++DA  VFD V+ +DVV+WN+MI G AM+G
Sbjct: 235 RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNG 294

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           +G+ AL+LF  M +    P++ TFI +L AC H G V+EG+R F +M+D Y I+P+ EHY
Sbjct: 295 YGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKPQREHY 353

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GC+ +LL RAG VEEA  L++DM +EP +  WG L+ +C++H +I +GE++ + LI    
Sbjct: 354 GCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEP 413

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            + G YV+L N+YA  G W+    +R +M+++G +KE G S IEL+  VHEF++GD RHP
Sbjct: 414 YDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHP 473

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQP 427
            +++IY +LE+I   L+  GYV  T  V+ D+  E+ K  +L  HSE+LA+AFG+++   
Sbjct: 474 LTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQ 533

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G  I+IVKNLRVC DCH   KL+SK   R+I++RDR+RFH F +G CSC DYW
Sbjct: 534 GVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 287/445 (64%), Gaps = 5/445 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           L+    ++  Y+K     AAR +FDD  +EE++VV W VMI G+AQ+G +N+AL LF  M
Sbjct: 408 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 467

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSK 155
           ++E   V PN  T   +L AC  + A+  G+ IH+Y+        +   V   LINMYSK
Sbjct: 468 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 527

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  AR VFD ++ K  + W SM+ GY MHG G +AL +F++M +    P DITF+ +
Sbjct: 528 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 587

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+H G+V++G  +F++M  +Y + P+ EHY   ++LL+R G++++A+K V DM +EP
Sbjct: 588 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 647

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            +V+W  LL ACR+H N+ L E     L+  N  N G+Y L+SNIYA  G W  VAR+R 
Sbjct: 648 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 707

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMK+ G++K PGCS ++       F  GD  HP S +IY +LE +   +KA GYVP+T  
Sbjct: 708 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 767

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+ E++K N L  HSEKLA+A+GL++T PG  I+I KNLRVC DCH+ F  ISK   
Sbjct: 768 ALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVD 827

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I++RD +RFHHF NG+CSCG YW
Sbjct: 828 HEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 162/301 (53%), Gaps = 19/301 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D++V  +L+D YA+ G + +A K+F  M  + +VS   M+  Y++ G   AA  LF +M 
Sbjct: 261 DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMR 320

Query: 69  EK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++    D+V W  +I GY+Q G ++EAL +FR+M+     PN VT ++VLSAC  +GA  
Sbjct: 321 KENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFS 380

Query: 125 SGRWIHSYIENSRNIKVNVQVG---------TALINMYSKCGSLKDARLVFDRV--NDKD 173
            G  IH+Y   +  + ++   G          ALI+MYSKC S K AR +FD +   +++
Sbjct: 381 QGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 440

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           VV W  MI G+A +G   DAL+LF EM      + P+  T   +L ACAH   +  G++ 
Sbjct: 441 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 500

Query: 232 FNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
              +   +  +        C++N+ S+ G V+ A + V D   +  ++ W +++    +H
Sbjct: 501 HAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA-RHVFDSMSQKSAISWTSMMTGYGMH 559

Query: 291 G 291
           G
Sbjct: 560 G 560



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 166/389 (42%), Gaps = 97/389 (24%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRM--LAE 101
           ++  Y++ G +  A ++FD++ ++   DV+ WN ++  + +   A  AL LF +M  +  
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 217

Query: 102 KVEPNE----VTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKC 156
           +   NE    ++ V +L ACG + A+   + +H + I N   +  +V VG ALI+ Y+KC
Sbjct: 218 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKC 275

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK---------- 206
           G +++A  VF+ +  KDVV WN+M+ GY+  G  K A +LF  M +  +           
Sbjct: 276 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI 335

Query: 207 -------------------------PSDITFIGLLSACAHAGLVNEGRRF---------- 231
                                    P+ +T I +LSACA  G  ++G             
Sbjct: 336 AGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 395

Query: 232 ---------------FNTMKDEYAI-----------------EPKVEHYGCMVNLLSRAG 259
                          +N + D Y+                  E  V  +  M+   ++ G
Sbjct: 396 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 455

Query: 260 QVEEAYKLVMDM-----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
              +A KL ++M      + P++     +L AC     I +G++I  Y++  +  +S  Y
Sbjct: 456 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY 515

Query: 315 VL---LSNIYAAIGNWDGVARVRTLMKEK 340
            +   L N+Y+  G+ D    V   M +K
Sbjct: 516 FVANCLINMYSKCGDVDTARHVFDSMSQK 544



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 133/290 (45%), Gaps = 18/290 (6%)

Query: 33  FATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
              +P    +S     T ++  Y   G    A ++ + +     V WN++I  + + G  
Sbjct: 39  LPALPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRL 98

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           + A+ +  RML      +  T   VL ACG++ +   G   H  I      + NV +  A
Sbjct: 99  DSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNA 157

Query: 149 LINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-R 204
           L+ MYS+CGSL++A ++FD +  +   DV+ WNS++  +        AL LF++M  I  
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 217

Query: 205 LKPSD-----ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRA 258
            KP++     I+ + +L AC     V + +    N +++   ++  V +   +++  ++ 
Sbjct: 218 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKC 275

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           G +E A K V +M    D V W  ++      GN     ++ + +  +N+
Sbjct: 276 GLMENAVK-VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENI 324



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 33/227 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V+  L+++Y++ GDV +A  +F +M Q+S +S T+M+T Y                   
Sbjct: 516 FVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY------------------- 556

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                         HG  +EAL +F +M      P+++T + VL AC   G ++ G    
Sbjct: 557 ------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 604

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     +    +     I++ ++ G L  A + V D   +   VVW +++    +H  
Sbjct: 605 DSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSN 664

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            + A    N++  +  + +D ++  + +  A AG   +  R  + MK
Sbjct: 665 VELAEHALNKLVEMNAE-NDGSYTLISNIYATAGRWKDVARIRHLMK 710


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/474 (42%), Positives = 301/474 (63%), Gaps = 1/474 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D  + V+ +L+  Y + G V  A+++F  MP+R LVS   +L+ Y     +  A+  F++
Sbjct: 325 DVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNE 384

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M EK+++ W +MI G AQ G A EAL  F RM  +  EP +      + +C  +G+L+ G
Sbjct: 385 MPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHG 444

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +H+ +      + ++  G ALI MY++CG +  A  +F  +   D + WN+MI     
Sbjct: 445 RQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQ 503

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G  A++LF EM +  + P  I+F+ ++SAC+HAGLV EGR++F++M + Y + P  E
Sbjct: 504 HGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEE 563

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY  +++LL RAG+  EA +++  M  EP + +W  LL  CR+HGNI LG + AE L   
Sbjct: 564 HYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFEL 623

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              + GTYVLLSN+YA  G W+ +A+VR LM+++GV+KEPGCS IE+ NKVH FL GD  
Sbjct: 624 KPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDAN 683

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+ ++IY  LE++   ++  GYVP T+ VLHD+    K++ L  HSEKLAVA+G +   
Sbjct: 684 HPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLP 743

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G ++++ KNLR+C DCH  FK +SK  GR+I++RD  RFHHF +G CSCGDYW
Sbjct: 744 HGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 36/314 (11%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A KLF  MP R  +S TT++T Y K  ++ AA+   +   +K  V WN MI GYA  GL 
Sbjct: 211 ARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLY 270

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS---RNIKVNVQV 145
            EA  +FR+M+  K++ +E T  +V+S C   G    G+ +H+Y   +       V + V
Sbjct: 271 LEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPV 330

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY--------------------- 184
             ALI  Y KCG +  A+ +F+++ ++D+V WN ++ GY                     
Sbjct: 331 NNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNI 390

Query: 185 ----------AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
                     A  GF ++AL+ FN M     +P D  F G + +C+  G +  GR+    
Sbjct: 391 LSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQ 450

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           +   Y  E  +     ++ + +R G V+ A+ L ++M    D++ W  ++ A   HG   
Sbjct: 451 VV-RYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALGQHGQGT 508

Query: 295 LGEKIAEYLISQNL 308
              ++ E ++ + +
Sbjct: 509 QAIELFEEMLKEGI 522



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 166/380 (43%), Gaps = 53/380 (13%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD--ME 68
           ++   L+D+Y++   +  A  LF  +PQ  +V+ TT++  Y+  G++  +R +F D  + 
Sbjct: 49  HILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLG 108

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG-R 127
            +D V +N MI  Y+ +   + A+ LF  M  +   P+  T  +VL A   +   E   +
Sbjct: 109 MRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQ 168

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGS---------LKDARLVFDRVNDKDV---- 174
            +H  +  S    V   V  ALI+ Y KC +         + +AR +FD + ++D     
Sbjct: 169 QLHCAVVKSGTGFV-TSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWT 227

Query: 175 ---------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
                                      V WN+MI GYA  G   +A ++F +M   +++ 
Sbjct: 228 TIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQL 287

Query: 208 SDITFIGLLSACAHAGLVNEGRR----FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            + TF  ++S CA+AG    G+     F  T+ +  A +  +     ++    + G+V+ 
Sbjct: 288 DEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANP-APDVAMPVNNALITFYWKCGKVDI 346

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
           A ++   M  E D V W  +L     + N+   ++   +       N  +++++ +  A 
Sbjct: 347 AQEIFNKMP-ERDLVSWNIILSG---YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQ 402

Query: 324 IGNWDGVARVRTLMKEKGVQ 343
           IG  +   +    MK +G +
Sbjct: 403 IGFAEEALKFFNRMKLQGFE 422



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 41/241 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V++  +  L    +L+ +YAR G V +A  LF  MP    +S   M+    +        
Sbjct: 452 VRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQ-------- 503

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   +A+ LF  ML E + P+ ++ + V+SAC   G
Sbjct: 504 -----------------------HGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAG 540

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ GR     + N   +  + +    +I++  + G   +A+ V + +  +    +W ++
Sbjct: 541 LVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEAL 600

Query: 181 IVGYAMHG---FGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMK 236
           + G  +HG    G +A +   E     LKP  D T++ L +  A AG  N+  +    M+
Sbjct: 601 LAGCRIHGNIDLGIEAAERLFE-----LKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMR 655

Query: 237 D 237
           D
Sbjct: 656 D 656


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 287/445 (64%), Gaps = 5/445 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           L+    ++  Y+K     AAR +FDD  +EE++VV W VMI G+AQ+G +N+AL LF  M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSK 155
           ++E   V PN  T   +L AC  + A+  G+ IH+Y+        +   V   LINMYSK
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  AR VFD ++ K  + W SM+ GY MHG G +AL +F++M +    P DITF+ +
Sbjct: 421 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 480

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+H G+V++G  +F++M  +Y + P+ EHY   ++LL+R G++++A+K V DM +EP
Sbjct: 481 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 540

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            +V+W  LL ACR+H N+ L E     L+  N  N G+Y L+SNIYA  G W  VAR+R 
Sbjct: 541 TAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRH 600

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMK+ G++K PGCS ++       F  GD  HP S +IY +LE +   +KA GYVP+T  
Sbjct: 601 LMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNF 660

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+ E++K N L  HSEKLA+A+GL++T PG  I+I KNLRVC DCH+ F  ISK   
Sbjct: 661 ALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVD 720

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I++RD +RFHHF NG+CSCG YW
Sbjct: 721 HEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 162/301 (53%), Gaps = 19/301 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D++V  +L+D YA+ G + +A K+F  M  + +VS   M+  Y++ G   AA  LF +M 
Sbjct: 154 DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMR 213

Query: 69  EK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++    D+V W  +I GY+Q G ++EAL +FR+M+     PN VT ++VLSAC  +GA  
Sbjct: 214 KENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFS 273

Query: 125 SGRWIHSYIENSRNIKVNVQVG---------TALINMYSKCGSLKDARLVFDRV--NDKD 173
            G  IH+Y   +  + ++   G          ALI+MYSKC S K AR +FD +   +++
Sbjct: 274 QGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 333

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           VV W  MI G+A +G   DAL+LF EM      + P+  T   +L ACAH   +  G++ 
Sbjct: 334 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 393

Query: 232 FNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
              +   +  +        C++N+ S+ G V+ A + V D   +  ++ W +++    +H
Sbjct: 394 HAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA-RHVFDSMSQKSAISWTSMMTGYGMH 452

Query: 291 G 291
           G
Sbjct: 453 G 453



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 166/389 (42%), Gaps = 97/389 (24%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRM--LAE 101
           ++  Y++ G +  A ++FD++ ++   DV+ WN ++  + +   A  AL LF +M  +  
Sbjct: 51  LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 110

Query: 102 KVEPNE----VTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKC 156
           +   NE    ++ V +L ACG + A+   + +H + I N   +  +V VG ALI+ Y+KC
Sbjct: 111 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKC 168

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK---------- 206
           G +++A  VF+ +  KDVV WN+M+ GY+  G  K A +LF  M +  +           
Sbjct: 169 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI 228

Query: 207 -------------------------PSDITFIGLLSACAHAGLVNEGRRF---------- 231
                                    P+ +T I +LSACA  G  ++G             
Sbjct: 229 AGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 288

Query: 232 ---------------FNTMKDEYAI-----------------EPKVEHYGCMVNLLSRAG 259
                          +N + D Y+                  E  V  +  M+   ++ G
Sbjct: 289 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 348

Query: 260 QVEEAYKLVMDM-----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
              +A KL ++M      + P++     +L AC     I +G++I  Y++  +  +S  Y
Sbjct: 349 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY 408

Query: 315 VL---LSNIYAAIGNWDGVARVRTLMKEK 340
            +   L N+Y+  G+ D    V   M +K
Sbjct: 409 FVANCLINMYSKCGDVDTARHVFDSMSQK 437



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML      +  T   VL ACG++ +   G   H  I      + NV +  AL+ MYS+CG
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLI-CCNGFESNVFICNALVAMYSRCG 59

Query: 158 SLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSD---- 209
           SL++A ++FD +  +   DV+ WNS++  +        AL LF++M  I   KP++    
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 210 -ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
            I+ + +L AC     V + +    N +++   ++  V +   +++  ++ G +E A K 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLMENAVK- 176

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           V +M    D V W  ++      GN     ++ + +  +N+
Sbjct: 177 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENI 217



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 33/227 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V+  L+++Y++ GDV +A  +F +M Q+S +S T+M+T Y                   
Sbjct: 409 FVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY------------------- 449

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                         HG  +EAL +F +M      P+++T + VL AC   G ++ G    
Sbjct: 450 ------------GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 497

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     +    +     I++ ++ G L  A + V D   +   VVW +++    +H  
Sbjct: 498 DSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSN 557

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            + A    N++  +  + +D ++  + +  A AG   +  R  + MK
Sbjct: 558 VELAEHALNKLVEMNAE-NDGSYTLISNIYATAGRWKDVARIRHLMK 603


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 299/436 (68%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y +  +V +AR +FD + E  VVC+N MI GYA+    NEAL LFR M  + ++P
Sbjct: 169 TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE+T ++VLS+C  +G+L+ G+WIH Y +     K  V+V TALI+M++KCGSL DA  +
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSI 287

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+++  KD   W++MIV YA HG  + ++ +F  M    ++P +ITF+GLL+AC+H G V
Sbjct: 288 FEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRV 347

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGR++F+ M  ++ I P ++HYG MV+LLSRAG +E+AY+ +  + I P  +LW  LL 
Sbjct: 348 EEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLA 407

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  H N+ L EK++E +   + ++ G YV+LSN+YA    W+ V  +R +MK++   K 
Sbjct: 408 ACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKV 467

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE++N VHEF +GD     + +++  L+E+   LK  GYVP T +V+H ++ +++
Sbjct: 468 PGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQE 527

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSEKLA+ FGL++T PGT+I++VKNLRVC DCH   KLIS   GRK+++RD  
Sbjct: 528 KEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQ 587

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGD+W
Sbjct: 588 RFHHFEDGKCSCGDFW 603



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 3/268 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +  L    T    +  ++ AR LF+ M E D+V +N M  GY++     E   LF  +L 
Sbjct: 63  VAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE 122

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + + P+  T  ++L AC    ALE GR +H  +     +  NV V   LINMY++C  + 
Sbjct: 123 DGILPDNYTFPSLLKACAVAKALEEGRQLHC-LSMKLGLDDNVYVCPTLINMYTECEDVD 181

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDR+ +  VV +N+MI GYA      +AL LF EM    LKP++IT + +LS+CA
Sbjct: 182 SARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA 241

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G ++ G ++ +    +++    V+    ++++ ++ G +++A  +   M+ + D+  W
Sbjct: 242 LLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAW 299

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++ A   HG       + E + S+N+
Sbjct: 300 SAMIVAYANHGKAEKSMLMFERMRSENV 327



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 82/145 (56%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  +AK G +  A  +F+ M  KD   W+ MI  YA HG A +++++F RM +E V+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+T + +L+AC   G +E GR   S + +   I  +++   +++++ S+ G+L+DA  
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYE 388

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHG 188
             D++      ++W  ++   + H 
Sbjct: 389 FIDKLPISPTPMLWRILLAACSSHN 413


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 302/436 (69%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  YA+ G +  A ++FD +  K+ V WN +I GYA+ G   EAL LF RM  E   
Sbjct: 214 SSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYR 273

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P E T  A+LS+C  +G LE G+W+H+++  S   K+   VG  L++MY+K GS++DA  
Sbjct: 274 PTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQ-KLVGYVGNTLLHMYAKSGSIRDAEK 332

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++   DVV  NSM++GYA HG GK+A Q F+EM R  ++P+DITF+ +L+AC+HA L
Sbjct: 333 VFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARL 392

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG+ +F  M+ +Y IEPKV HY  +V+LL RAG +++A   + +M IEP   +WG LL
Sbjct: 393 LDEGKHYFGLMR-KYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GA ++H N  +G   A+ +   + +  GT+ LL+NIYA+ G W+ VA+VR +MK+ GV+K
Sbjct: 452 GASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKK 511

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N VH F+A D+ HP+ ++I+ M E++N  +K  GYVP T  VL  + +++
Sbjct: 512 EPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQE 571

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L+ HSEKLA++F L++T PG++I+I+KN+RVC DCH+  K +S    R+I++RD N
Sbjct: 572 KELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTN 631

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 632 RFHHFCDGFCSCGDYW 647



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 157/265 (59%), Gaps = 8/265 (3%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +  LV   ++L  YA+ G +  AR LFD+M  +D+V W  MI GYAQ+  A++AL+LF R
Sbjct: 106 KHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPR 165

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML++  EPNE T  +++  CG + +   GR IH+          NV VG++L++MY++CG
Sbjct: 166 MLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWK-YGCHSNVFVGSSLVDMYARCG 224

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            L +A LVFD++  K+ V WN++I GYA  G G++AL LF  M R   +P++ T+  LLS
Sbjct: 225 YLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLS 284

Query: 218 ACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +C+  G + +G+    + MK    +   V +   ++++ +++G + +A K V D  ++ D
Sbjct: 285 SCSSMGCLEQGKWLHAHLMKSSQKLVGYVGN--TLLHMYAKSGSIRDAEK-VFDKLVKVD 341

Query: 277 SVLWGTLLGACRLHGNIALGEKIAE 301
            V   ++L     HG   LG++ A+
Sbjct: 342 VVSCNSMLIGYAQHG---LGKEAAQ 363



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 3/184 (1%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +EP+      +L  C Q+G L+ G+ +H ++ NS N K ++ +  +L+ MY++CGSL+ A
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNS-NFKHDLVIQNSLLFMYARCGSLEGA 128

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R +FD +  +D+V W SMI GYA +    DAL LF  M     +P++ T   L+  C + 
Sbjct: 129 RRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
              N GR+       +Y     V     +V++ +R G + EA  LV D     + V W  
Sbjct: 189 ASYNCGRQIHACCW-KYGCHSNVFVGSSLVDMYARCGYLGEAM-LVFDKLGCKNEVSWNA 246

Query: 283 LLGA 286
           L+  
Sbjct: 247 LIAG 250



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 35/179 (19%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           YV  +L+ +YA+ G +  AEK+F  + +  +VS  +ML  Y                   
Sbjct: 312 YVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGY------------------- 352

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                       AQHGL  EA   F  M+   +EPN++T ++VL+AC     L+ G+  H
Sbjct: 353 ------------AQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGK--H 398

Query: 131 SY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
            + +    NI+  V     ++++  + G L  A+   + +  +  V +W +++    MH
Sbjct: 399 YFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMH 457


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/479 (40%), Positives = 312/479 (65%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           L  D +  +S++ +++   DVL  +++   + ++ + S     ++++  YAK   +  + 
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 261

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F  +  +D + WN ++ GY Q+G  NEAL LFR+M++ KV P  V   +V+ AC  + 
Sbjct: 262 RVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLA 321

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  G+ +H Y+        N+ + +AL++MYSKCG+++ AR +FDR+N  D V W ++I
Sbjct: 322 TLHLGKQLHGYVLRG-GFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAII 380

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G+A+HG G +A+ LF EM R  +KP+ + F+ +L+AC+H GLV+E   +FN+M   Y +
Sbjct: 381 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 440

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             ++EHY  + +LL RAG++EEAY  +  M++EP   +W TLL +C +H N+ L EK+AE
Sbjct: 441 NQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAE 500

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            + + +  N G YVL+ N+YA+ G W  +A++R  +++KG++K+P CS IE+ NK H F+
Sbjct: 501 KIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFV 560

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +GD  HP    I   L+ +   ++ EGYV  T  VLHD+ E+ K+  L  HSE+LAVAFG
Sbjct: 561 SGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFG 620

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I+T+PGT+I++ KN+R+C DCH   K ISK T R+I++RD +RFHHF  G+CSCGDYW
Sbjct: 621 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 144/292 (49%), Gaps = 36/292 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  +D DLY   +L+++Y++   + S  K+F  MP++ +VS  T               
Sbjct: 132 VRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNT--------------- 176

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                           +I GYAQ G+  +AL + R M    ++P+  T  +VL    +  
Sbjct: 177 ----------------VIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYV 220

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +  G+ IH Y+   + I  +V +G++L++MY+K   ++D+  VF  +  +D + WNS++
Sbjct: 221 DVLKGKEIHGYVIR-KGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLV 279

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYA 240
            GY  +G   +AL+LF +M   +++P  + F  ++ ACAH   ++ G++     ++  + 
Sbjct: 280 AGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 339

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
               +     +V++ S+ G ++ A K+   M +  D V W  ++    LHG+
Sbjct: 340 RNIFIA--SALVDMYSKCGNIQAARKIFDRMNLH-DEVSWTAIIMGHALHGH 388



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 151/353 (42%), Gaps = 38/353 (10%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S  S + +++ Y     +  A ++F  +E   V+ W  +I  +    L + AL  F  M 
Sbjct: 38  SHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMR 97

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           A    P+     +VL +C  +  L  G  +H +I     +  ++  G AL+NMYSK   +
Sbjct: 98  ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR-LGMDCDLYTGNALMNMYSKLLGI 156

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
              R VF+ +  KDVV +N++I GYA  G  +DAL++  EM    LKP   T   +L   
Sbjct: 157 DSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIF 216

Query: 220 AHAGLVNEGRRFF---------------NTMKDEYAIEPKVE---------------HYG 249
           +    V +G+                  +++ D YA   ++E                + 
Sbjct: 217 SEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWN 276

Query: 250 CMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            +V    + G+  EA +L   M   K+ P +V + +++ AC     + LG+++  Y++  
Sbjct: 277 SLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG 336

Query: 307 NLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
               N      L ++Y+  GN   +   R +     +  E   ++I + + +H
Sbjct: 337 GFGRNIFIASALVDMYSKCGN---IQAARKIFDRMNLHDEVSWTAIIMGHALH 386


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/479 (44%), Positives = 307/479 (64%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
           +  D + +  ++   AR  D+ + E ++    Q    +S+   T  +  Y K GE+A AR
Sbjct: 168 MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M  KD V W  M+ GYA +G   EAL LF  M AE ++P+       LSAC ++G
Sbjct: 228 EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 287

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ GR     ++    +  N  +GTALI+MY+KCGS  +A +VF ++  KD++VWN+MI
Sbjct: 288 ALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMI 346

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G  M G  K A  L  +M +  +K +D TFIGLL +C H GL+ +GRR+F+ M   Y I
Sbjct: 347 LGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHI 406

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYGCMV+LLSRAG ++EA++LV DM +  ++V+ G LLG C++H N  L E + +
Sbjct: 407 SPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLK 466

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     NSG YV+LSNIY+  G W+  A++R  MK KGV+K P CS +E   KVHEF 
Sbjct: 467 QLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFR 526

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP S +IY  L+E+   +K  GY P T++V+ D+ +++K+++L  HSEKLA+AF 
Sbjct: 527 VGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFN 586

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T PG +I++ KNLRVC DCH   KL+S+ T R+I++RD NRFH F +G+CSC DYW
Sbjct: 587 LLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS-LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           R G+ L A  L   +P  +    LT++L+ YAK G +  A+ +FD+M     V W  +I 
Sbjct: 88  RAGEQLHARSL--KLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALIT 145

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            Y   G   EA+ + R   A  + P+  TAV VL+AC +I  L +G  +    E    + 
Sbjct: 146 AYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQE-GVA 204

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +V V TA +++Y KCG +  AR VFD++  KD V W +M+ GYA +G  ++AL LF  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAG 259
               +KP      G LSAC   G ++ GR+    +  DE+   P +     ++++ ++ G
Sbjct: 265 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 322

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              EA+ +   M+ + D ++W  ++    + G+    EKIA  L+ Q
Sbjct: 323 STVEAWVVFQQMR-KKDIIVWNAMILGLGMTGH----EKIAFALVGQ 364


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/467 (44%), Positives = 305/467 (65%), Gaps = 2/467 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +L+D+YA+ GD+  A+ +F  + + +       ++  Y K G V  AR LFD M  +DV+
Sbjct: 277 ALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVI 336

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            +N MI GY   G   +AL LF +M    +  +  T V++L+AC  +GAL  GR +H+ I
Sbjct: 337 TFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASI 396

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           E  R ++ +V +GTAL++MY KCG + +A  VF R+ ++DV  W +MI G A +G GKDA
Sbjct: 397 EQ-RIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDA 455

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L+ F +M R   +P+ +T+I +L+AC+H+ L++EGR  FN M+  + + P+VEHYGCM++
Sbjct: 456 LESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMID 515

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL+R+G ++EA  LV  M ++P++V+WG++L ACR+H NI L    AE+L+         
Sbjct: 516 LLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAV 575

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YV L NIY     W    RVR LM+E+GV+K  G SSI ++ +VH+F+A D  HP + EI
Sbjct: 576 YVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEI 635

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKI 433
             M+EEI   LK+ GY P T  +  D+ E++K+ +L  HSEK+A+AFGLIS  P   I I
Sbjct: 636 MAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHI 695

Query: 434 VKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           VKNLRVC DCH+  KL+S+   R+I++RDR+RFHHF +G CSC D+W
Sbjct: 696 VKNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 35/312 (11%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V+  L+ +YA  G    A + F  +P +  V   T++    + G +  AR L     E++
Sbjct: 142 VANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 201

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           VV W  +I GY++ G   +A+  F  ML++ V P+EV  +  LSAC ++  L+ GR +H 
Sbjct: 202 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHL 261

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-------------------- 171
            +   R I++   +  ALI+MY+KCG +  A+ VFD V                      
Sbjct: 262 LVGQKR-IRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHV 320

Query: 172 ------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
                       +DV+ +NSMI GY   G  +DALQLF +M R  ++  + T + LL+AC
Sbjct: 321 DVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G +  GR    ++ ++  +E  V     ++++  + G+V+EA  +   M  E D   
Sbjct: 381 ASLGALPHGRALHASI-EQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ERDVHT 438

Query: 280 WGTLLGACRLHG 291
           W  ++     +G
Sbjct: 439 WTAMIAGLAFNG 450


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/435 (46%), Positives = 296/435 (68%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L+ Y   G+  AA+VLFD ME + +V WNVMI GY+Q+GL +EA+ LFR+ML++ ++P
Sbjct: 448 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 507

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            E+  + V  AC Q+ AL  G+ +H +   + ++  ++ V +++I+MY+K G +  ++ +
Sbjct: 508 YEIAIMCVCGACSQLSALRLGKELHCFALKA-HLTEDIFVSSSIIDMYAKGGCIGLSQRI 566

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR+ +KDV  WN +I GY +HG GK+AL+LF +M R+ LKP D TF G+L AC+HAGLV
Sbjct: 567 FDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLV 626

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +G  +FN M + + IEPK+EHY C+V++L RAG++++A +L+ +M  +PDS +W +LL 
Sbjct: 627 EDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLS 686

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           +CR+HGN+ LGEK+A  L+         YVL+SN++A  G WD V RVR  MK+ G+QK+
Sbjct: 687 SCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKD 746

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
            GCS IE+  KVH FL GD   P+ +E+      +   + + GY P T  VLHD+ E+ K
Sbjct: 747 AGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDK 806

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
              L  HSEKLA++FGL++T  G  +++ KNLR+C DCH   K ISK   R I++RD  R
Sbjct: 807 IGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKR 866

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G CSCGDYW
Sbjct: 867 FHHFRDGICSCGDYW 881



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 124/247 (50%), Gaps = 3/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
              +  Y + G + ++  +FD M+ K V  WN ++ GYAQ+    +AL L+ +M    ++
Sbjct: 346 NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD 405

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T  ++L AC ++ +L  G  IH +   +  + V+  +G +L+++Y  CG    A++
Sbjct: 406 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRN-GLAVDPFIGISLLSLYICCGKPFAAQV 464

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  + +V WN MI GY+ +G   +A+ LF +M    ++P +I  + +  AC+    
Sbjct: 465 LFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSA 524

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G+         +  E  +     ++++ ++ G +  + + + D   E D   W  ++
Sbjct: 525 LRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQR-IFDRLREKDVASWNVII 582

Query: 285 GACRLHG 291
               +HG
Sbjct: 583 AGYGIHG 589



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 35/239 (14%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L +D++VS+S++D+YA+GG +         + QR                     
Sbjct: 535 ALKAHLTEDIFVSSSIIDMYAKGGCI--------GLSQR--------------------- 565

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +FD + EKDV  WNV+I GY  HG   EAL LF +ML   ++P++ T   +L AC   
Sbjct: 566 --IFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 623

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G +E G    + + N  NI+  ++  T +++M  + G + DA RL+ +   D D  +W+S
Sbjct: 624 GLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSS 683

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           ++    +HG      ++ N++  +   KP +   I  L   A +G  ++ RR    MKD
Sbjct: 684 LLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLF--AGSGKWDDVRRVRGRMKD 740



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 131/245 (53%), Gaps = 6/245 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           T ++T Y+  G  + +R++FD +  K++  WN ++  Y ++ L  +A+ +F  +++  + 
Sbjct: 38  TRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEH 97

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T   V+ AC  +  L  G+ IH  +    ++  +V VG ALI MY KCG +++A 
Sbjct: 98  KPDNFTLPCVIKACAGLLDLGLGQIIHG-MATKMDLVSDVFVGNALIAMYGKCGLVEEAV 156

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSACAH 221
            VF+ + ++++V WNS+I G++ +GF +++   F EM        P   T + +L  CA 
Sbjct: 157 KVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAG 216

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
              + +G    + +  +  +  ++     ++++ S+   + EA +L+ D   + + V W 
Sbjct: 217 EEDIEKGMA-VHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEA-QLLFDKNDKKNIVSWN 274

Query: 282 TLLGA 286
           +++G 
Sbjct: 275 SMIGG 279



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 153/335 (45%), Gaps = 39/335 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--K 102
            +++  Y+K   ++ A++LFD  ++K++V WN MI GYA+         L ++M  E  K
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           ++ +E T + VL  C +   L+S + +H Y      ++ N  V  A I  Y++CG+L  +
Sbjct: 303 MKADEFTILNVLPVCLERSELQSLKELHGY-SWRHGLQSNELVANAFIAAYTRCGALCSS 361

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VFD ++ K V  WN+++ GYA +   + AL L+ +M    L P   T   LL AC+  
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 223 GLVNEGRRFFN-TMKDEYAIEPKV------------------------EH-----YGCMV 252
             ++ G       +++  A++P +                        EH     +  M+
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 481

Query: 253 NLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
              S+ G  +EA  L   M    I+P  +    + GAC     + LG+++  + +  +L 
Sbjct: 482 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 541

Query: 310 NSGTYVLLS--NIYAAIGNWDGVARVRTLMKEKGV 342
               +V  S  ++YA  G      R+   ++EK V
Sbjct: 542 ED-IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV 575



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 141/351 (40%), Gaps = 79/351 (22%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
             K  L  D++V  +L+ +Y + G V  A K+F  MP+R+LVS                 
Sbjct: 127 ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVS----------------- 169

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA--EKVEPNEVTAVAVLSACG 118
                         WN +I G++++G   E+   FR ML   E   P+  T V VL  C 
Sbjct: 170 --------------WNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCA 215

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
               +E G  +H  +     +   + V  +LI+MYSKC  L +A+L+FD+ + K++V WN
Sbjct: 216 GEEDIEKGMAVHG-LAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWN 274

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRI-----RLKPSDITFIGLLSAC-------------- 219
           SMI GYA     +D  + F  + ++     ++K  + T + +L  C              
Sbjct: 275 SMIGGYARE---EDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHG 331

Query: 220 ---------------------AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
                                   G +    R F+ M  +          G   N  S  
Sbjct: 332 YSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQN--SDP 389

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            +  + Y  + D  ++PD    G+LL AC    ++  GE+I  + +   LA
Sbjct: 390 RKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA 440



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 5/174 (2%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L ACGQ   +E GR +H  +  S     +  + T +I MYS CGS  D+R+VFD++  K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGR-R 230
           ++  WN+++  Y  +   +DA+ +F+E+  +   KP + T   ++ AC  AGL++ G  +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 121

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             + M  +  +   V     ++ +  + G VEEA K+   M  E + V W +++
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSII 174


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/435 (45%), Positives = 299/435 (68%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L+ Y   GE ++AR+LFD MEEK  V WN MI GY+Q+GL  +AL+LFR+++++  +P
Sbjct: 377 SLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQP 436

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +++  V+VL AC Q  AL  G+  H Y   +  ++ +V V  + I+MY+K G +K++R V
Sbjct: 437 SDIAVVSVLGACSQQSALRLGKETHCYALKALLME-DVFVACSTIDMYAKSGCIKESRSV 495

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD + +KD+  WN++I  Y +HG G+++++LF  M ++   P   TFIG+L+ C+HAGLV
Sbjct: 496 FDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLV 555

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG ++FN M++ + IEPK+EHY C++++L RAG++++A +LV +M  +PDS +W +LL 
Sbjct: 556 EEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLS 615

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
            CR  G + +G+ +AE L+     N   YV LSN+YA  G WD V RVR ++K+ G+QK+
Sbjct: 616 FCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKD 675

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
            GCS IEL  KVH F+AGD   P+SKE+ M   ++   +   GY P T  VLHD+ E++K
Sbjct: 676 AGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKK 735

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
              L  HSEKLA+ FGL++T  GT+++I KNLR+C DCH   K +S+ TGR+I++RD  R
Sbjct: 736 IEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKR 795

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G CSCGDYW
Sbjct: 796 FHHFKDGLCSCGDYW 810



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 147/338 (43%), Gaps = 55/338 (16%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKV 103
            +++  Y+K G +  A++LFD    K+ V WN MI G    G   EA  LFR M + E +
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           E NEVT + +L AC +I  L S + +H Y       + +  V    +  Y+KCG L  A 
Sbjct: 233 EVNEVTVLNILPACLEISQLRSLKELHGY-SIRHGFQYDELVANGFVAAYAKCGMLICAE 291

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT------------ 211
            VF  +  K V  WN++I G A +G  + AL L+ +M    L P   T            
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351

Query: 212 ---------------------FIG--LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
                                FIG  LLS   H G  +  R  F+ M+++ ++      +
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS-----W 406

Query: 249 GCMVNLLSRAGQVEEAY----KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
             M++  S+ G  E+A     KLV D   +P  +   ++LGAC     + LG++   Y +
Sbjct: 407 NAMISGYSQNGLPEDALILFRKLVSD-GFQPSDIAVVSVLGACSQQSALRLGKETHCYAL 465

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                     +L+ +++ A    D  A+   + + + V
Sbjct: 466 KA--------LLMEDVFVACSTIDMYAKSGCIKESRSV 495



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 101/178 (56%), Gaps = 4/178 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA--EK 102
             ++  Y K G V AA  +F  M  +++V WN +I G++++G + +   +   M+A  E 
Sbjct: 70  NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P+  T V VL  C +   ++ G  IH  +     +  +V+V  +L++MYSKCG L +A
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHG-LAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSAC 219
           +++FD+ N K+ V WN+MI G    G+  +A  LF EM  +  ++ +++T + +L AC
Sbjct: 189 QMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 35/239 (14%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L +D++V+ S +D+YA+ G +  +  +F                           
Sbjct: 464 ALKALLMEDVFVACSTIDMYAKSGCIKESRSVF--------------------------- 496

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
               D ++ KD+  WN +I  Y  HG   E++ LF RM      P+  T + +L+ C   
Sbjct: 497 ----DGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHA 552

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G +E G    + ++N   I+  ++    +++M  + G L DA RLV +     D  VW+S
Sbjct: 553 GLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSS 612

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKD 237
           ++       FG+  +        + L+P ++  ++ L +  A +G  ++ RR    +KD
Sbjct: 613 LLS--FCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKD 669



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 10/212 (4%)

Query: 87  LANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESG--RWIHSYIENSRNIKVNV 143
           L ++A+ +F +++ + +   +  T   V+ AC   G+L+ G    IH  +     + ++V
Sbjct: 10  LYSDAIDMFVKLITDTEFNADNFTFPCVIKAC--TGSLDRGLGEVIHGMVIK-MGLLLDV 66

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            VG ALI MY K G +  A  VF  +  +++V WNS+I G++ +GF KD   +  EM   
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 204 R--LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              L P   T + +L  CA    V  G R  + +  +  +   V     +V++ S+ G +
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIR-IHGLAVKLGLSEDVRVNNSLVDMYSKCGYL 185

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            EA +++ D     ++V W T++G     G I
Sbjct: 186 TEA-QMLFDKNNRKNAVSWNTMIGGLCTKGYI 216


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/477 (45%), Positives = 302/477 (63%), Gaps = 4/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L     V + +  LY  GG V     +F    Q   + LT ++  Y+       A  +FD
Sbjct: 105 LSSSFAVKSCIRFLYLPGG-VQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFD 163

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQIGAL 123
           +M  +D V WNVMI    ++    +AL LF  M     K EP++VT + +L AC  + AL
Sbjct: 164 EMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNAL 223

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           E G  IH YI   R  +  + +  +LI+MYS+CG L  A  VF  + +K+VV W++MI G
Sbjct: 224 EFGERIHGYIME-RGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISG 282

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
            AM+G+G++A++ F EM RI + P D TF G+LSAC+++G+V+EG  FF+ M  E+ + P
Sbjct: 283 LAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTP 342

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            V HYGCMV+LL RAG +++AY+L+M M ++PDS +W TLLGACR+HG++ LGE++  +L
Sbjct: 343 NVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHL 402

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
           I      +G YVLL NIY++ G+W+ VA VR LMK K +Q  PGCS+IEL   VHEF+  
Sbjct: 403 IELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVD 462

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D+ H +++EIY  L+EIN  L+  GYV +    LH + +K+K   L  HSEKLAVAFG++
Sbjct: 463 DVSHSRNREIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVL 522

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +T PGT +++  NLRVC DCH   KL S    R +++RD NRFHHF  G CSC DYW
Sbjct: 523 ATPPGTILRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 9/270 (3%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQG---EVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           + A  +  T+ Q   VSL   L+  A  G   + + ++  F  +    V  +N MI   +
Sbjct: 22  IHAHIIRTTLIQYPTVSLQ-FLSRIALSGPLQDASYSQRFFGQLSHPLVSHYNTMIRACS 80

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
                 + L+L+R M    +  + +++   + +C +   L  G  +H  I    + + + 
Sbjct: 81  MSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGH-QWDT 139

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--C 201
            + TA++++YS C    DA  VFD +  +D V WN MI     +   +DAL LF+ M   
Sbjct: 140 LLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGS 199

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
             + +P D+T + LL ACAH   +  G R    +  E      +     ++++ SR G +
Sbjct: 200 SYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIM-ERGYRDALNLCNSLISMYSRCGCL 258

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++AY++   M    + V W  ++    ++G
Sbjct: 259 DKAYEVFKGMG-NKNVVSWSAMISGLAMNG 287


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/504 (42%), Positives = 303/504 (60%), Gaps = 35/504 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA------ 60
           ++D+    +++  YA+ G V  A ++F  MP ++ +S   +L  Y + G +  A      
Sbjct: 54  ERDIVSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFES 113

Query: 61  --------------------RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
                               R LFD+M ++D + W+ MI GY+Q+G + EAL  F  M  
Sbjct: 114 KMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQR 173

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKC 156
           +    N  +    LS C  I ALE GR +H      R +K   Q    VG AL+ MY KC
Sbjct: 174 DCERLNRSSFTCALSTCSNIAALELGRQLHC-----RLVKAGYQTGWYVGNALLAMYCKC 228

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           GS+ +AR  F  + +KDVV WN+MI GYA HGFG++AL +F  M    ++P D T + +L
Sbjct: 229 GSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVL 288

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC+HAGLV++G  +F +M  +Y I  K+ HY CMV+LL RAGQ+EEA  L+ +M  EPD
Sbjct: 289 AACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPD 348

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           +  WG LLGA R+HGN  LGEK A+ +      NSG Y+LLS +YAA G W    ++R  
Sbjct: 349 AATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLE 408

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           M+ KGV+K PG S +E+ NK+H F  GD  HP + +IY  LEE++  LK EGY+  T +V
Sbjct: 409 MRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLV 468

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
            HD+ E++K + L+ HSEKLAVA+G++    G  I+++KNLRVC DCH   K ISK  GR
Sbjct: 469 FHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGR 528

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
            I++RD +RFH+F  G+CSC D+W
Sbjct: 529 LIILRDNHRFHYFEGGSCSCRDFW 552


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/481 (44%), Positives = 313/481 (65%), Gaps = 8/481 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAA 60
              DL    SL  + A+  D  ++  +   + +R      +V    ++  YAK G + +A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQ 119
             +F+ +  KDV+ WN +I GYAQ+GLA+EA+ +++ M   +++ PN+ T V++L A   
Sbjct: 473 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G  IH  +  + N+ ++V V T LI++Y KCG L DA  +F +V  +  V WN+
Sbjct: 533 VGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNA 591

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I  + +HG  +  L+LF EM    +KP  +TF+ LLSAC+H+G V EG+  F  M+ EY
Sbjct: 592 IISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EY 650

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P ++HYGCMV+LL RAG +E AY  + DM ++PD+ +WG LLGACR+HGNI LG+  
Sbjct: 651 GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFA 710

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           ++ L   +  N G YVLLSNIYA +G W+GV +VR+L +E+G++K PG S+IE++ KV  
Sbjct: 711 SDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDV 770

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F  G+  HPK KEIY  L  +   +K+ GY+P    VL D+ E +K++ L  HSE+LA+A
Sbjct: 771 FYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIA 830

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+IST P + I+I KNLRVC DCH   K IS+ T R+I++RD NRFHHF +G CSCGDY
Sbjct: 831 FGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDY 890

Query: 480 W 480
           W
Sbjct: 891 W 891



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 8/292 (2%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++    +++  Y++ G    AR LFDDM  +D+  WN MI G  Q+G A +AL +   
Sbjct: 247 QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE 306

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E ++ N VT V++L  C Q+G + +   IH Y+     ++ ++ V  ALINMY+K G
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK-HGLEFDLFVSNALINMYAKFG 365

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +L+DAR  F ++   DVV WNS+I  Y  +     A   F +M     +P  +T + L S
Sbjct: 366 NLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLAS 425

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
             A +      R     +     +   V     +V++ ++ G ++ A+K+   + ++ D 
Sbjct: 426 IVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DV 484

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQN----LANSGTYVLLSNIYAAIG 325
           + W TL+     +G     E I  Y + +     + N GT+V +   YA +G
Sbjct: 485 ISWNTLITGYAQNG--LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 11/309 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G +  AR  F  M   DVV WN +I  Y Q+     A   F +M     +P+
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPD 416

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V++ S   Q    ++ R +H +I     +  +V +G A+++MY+K G L  A  VF
Sbjct: 417 LLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVF 476

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGL 224
           + +  KDV+ WN++I GYA +G   +A++++  M  C+  + P+  T++ +L A AH G 
Sbjct: 477 EIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK-EIIPNQGTWVSILPAYAHVGA 535

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G +     +K    ++  V    C++++  + G++ +A  L   +  E  SV W  +
Sbjct: 536 LQQGMKIHGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAI 592

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +    +HG+     K+   ++ + +  +  T+V L +  +  G  +       LM+E G+
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGI 652

Query: 343 Q---KEPGC 348
           +   K  GC
Sbjct: 653 KPSLKHYGC 661



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL-VLFRR 97
           +S+   T ++  YA  G+V+ +R  FD + +KDV  WN MI  Y  +G  +EA+   ++ 
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 208

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           +L  ++ P+  T   VL ACG    L  GR IH +       + NV V  +LI+MYS+ G
Sbjct: 209 LLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCW-AFKLGFQWNVFVAASLIHMYSRFG 264

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
               AR +FD +  +D+  WN+MI G   +G    AL + +EM    +K + +T + +L 
Sbjct: 265 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
            C   G ++      +    ++ +E  +     ++N+ ++ G +E+A K    M I  D 
Sbjct: 325 VCPQLGDISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT-DV 382

Query: 278 VLWGTLLGA 286
           V W +++ A
Sbjct: 383 VSWNSIIAA 391



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 39/191 (20%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K +L  D++V+T L+D+Y + G ++ A  LF  +PQ S V+   +++C+          
Sbjct: 547 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI-------- 598

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG A + L LF  ML E V+P+ VT V++LSAC   G
Sbjct: 599 -----------------------HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVVW 177
            +E G+W    ++    IK +++    ++++  + G L+   + +D + D     D  +W
Sbjct: 636 FVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLE---MAYDFIKDMPLQPDASIW 691

Query: 178 NSMIVGYAMHG 188
            +++    +HG
Sbjct: 692 GALLGACRIHG 702


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/516 (40%), Positives = 311/516 (60%), Gaps = 39/516 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------- 55
           K  LD+++YV+ S + +Y+R G    A ++F  MP R +VS   M+  +A+ G       
Sbjct: 151 KLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIE 210

Query: 56  -------------------------------EVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
                                          ++   R +FD+M+ K+++ WN M+  YA 
Sbjct: 211 VFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYAN 270

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           +    +A+ LF  M  ++VEP+ +T   VL  CG++ A   G+ IH  I+  +N+  N+ 
Sbjct: 271 NEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKR-KNMCPNLL 329

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  AL++MY+ CG LKDAR +FD ++ +DV+ W S+I  Y  HG G++A+ LF +M    
Sbjct: 330 LENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQG 389

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           L+P  I F+ +L+AC+HAGL+ +G+ +F++M   Y I PK EHY CMV+LL RAG + EA
Sbjct: 390 LEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEA 449

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y  +  M IEP+  +WG LL ACR+H N+ +G   A+ L S     +G YVLLSN+YA  
Sbjct: 450 YDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARA 509

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W  V  VR++M  KG++K PG S +EL ++VH F  GD  HP+S+ IY  L+E+ G +
Sbjct: 510 GRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKI 569

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
           +  GY P+ +  LHD+ E+ K++ L VHSEKLA+AF L++T PGT I++  NLR C DCH
Sbjct: 570 RGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCH 629

Query: 445 AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              KLIS  T R+I+++D NR HH V G CSCGDYW
Sbjct: 630 LAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 135/290 (46%), Gaps = 21/290 (7%)

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGA 122
           D       VC+NV+I       L  +ALVLF  M        P+  T    L +C     
Sbjct: 79  DGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKD 138

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G  IHS +   R +  NV V  + I+MYS+CG  +DA  VFD +  +DVV WN+MI 
Sbjct: 139 LLLGLQIHSAVAKLR-LDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIA 197

Query: 183 GYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGL--VNEGRRFFNTMKDEY 239
           G+A  G    A+++F +   ++   P   T  G+L A  +A    +   RR F+ M+ + 
Sbjct: 198 GFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKE 257

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALG 296
            I      +  M+ + +      +A +L M M   ++EPDS+   T+L  C      ++G
Sbjct: 258 LIS-----WNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVG 312

Query: 297 EKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLMKEKGV 342
           ++I E +  +N+  +   +LL N    +YA+ G       +  LM  + V
Sbjct: 313 KRIHEIIKRKNMCPN---LLLENALMDMYASCGCLKDAREIFDLMSARDV 359


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 309/479 (64%), Gaps = 9/479 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAARVL 63
           DL    SL  + A  G+ LS+  +   + +R      +     ++  YAK G + +AR +
Sbjct: 340 DLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKV 399

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGA 122
           F+ +  KDV+ WN +I GY+Q+GLANEA+ ++  M       PN+ T V++L+A  Q+GA
Sbjct: 400 FEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGA 459

Query: 123 LESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L+ G   H   I+N   +  ++ V T L++MY KCG L DA  +F  V  +  V WN++I
Sbjct: 460 LKQGMKAHGQLIKNF--LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAII 517

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             + +HG+G  A++LF EM    +KP  ITF+ LLSAC+H+GLV+EG+  F  M++ Y I
Sbjct: 518 SCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGI 577

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P ++HYGCMV+L  RAG +E+A+  V +M + PD  +WG LLGACR+H N+ L   +++
Sbjct: 578 RPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSD 637

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L+     N G YVLLSNIYA +G+W+GV  VR+L +++G++K PG SSIE+  K+  F 
Sbjct: 638 HLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFY 697

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            G+  HPK +EIY  L  +   +K+ GYVP    VL D+ + +K+N L  HSE+LA+AFG
Sbjct: 698 TGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFG 757

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +IST P T+++I KNLRVC DCH   K ISK T R+I++RD NRFHHF +G CSCGDYW
Sbjct: 758 IISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 134/252 (53%), Gaps = 3/252 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L     ++  YAK GE+ +A  +F+ M+ +D+V WN ++  + Q+     AL ++ +M +
Sbjct: 275 LFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHS 334

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+ +T V++ S   ++G   S R IH ++        ++ +G A+I+MY+K G + 
Sbjct: 335 IGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFID 394

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSAC 219
            AR VF+ +  KDV+ WNS+I GY+ +G   +A+ +++ M       P+  T++ +L+A 
Sbjct: 395 SARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAH 454

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +  G + +G +    +   + +   +    C+V++  + G++ +A  L  ++     SV 
Sbjct: 455 SQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVP-HQSSVS 512

Query: 280 WGTLLGACRLHG 291
           W  ++    LHG
Sbjct: 513 WNAIISCHGLHG 524



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 4/277 (1%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y++ G V+ A  LFD+M  +D+  WN MI G+  +G   EAL +F  M  + V  + VT 
Sbjct: 184 YSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTI 243

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            ++L  C Q+  + SG  IH Y      ++ ++ V  ALINMY+K G L+ A  +F+++ 
Sbjct: 244 SSLLPICVQLDDIISGVLIHVY-AIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMK 302

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +D+V WNS++  +  +     AL ++N+M  I + P  +T + L S  A  G     R 
Sbjct: 303 VRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRS 362

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
               +         +     ++++ ++ G ++ A K+   + ++ D + W +L+     +
Sbjct: 363 IHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITGYSQN 421

Query: 291 G--NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
           G  N A+    +    S  + N GT+V +   ++ +G
Sbjct: 422 GLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLG 458



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 148/298 (49%), Gaps = 22/298 (7%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           +S+     ++  YA  G++  AR+ FD ++ KDV  WN MI  YA+ G  + A+  F   
Sbjct: 73  QSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEF 132

Query: 99  LAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           L+   ++ +  T   V+ ACG    L+ GR +H  +      + +V +  + I+ YS+ G
Sbjct: 133 LSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVLK-LGFECDVYIAASFIHFYSRFG 188

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  A  +FD +  +D+  WN+MI G+ ++G   +AL++F+EM    +    +T   LL 
Sbjct: 189 FVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLP 248

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEH--YGC--MVNLLSRAGQVEEAYKLVMDMKI 273
            C     +  G      +   YAI+  +E   + C  ++N+ ++ G++  A  +   MK+
Sbjct: 249 ICVQLDDIISG-----VLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKV 303

Query: 274 EPDSVLWGTLLGACRLHGN--IALG--EKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
             D V W +LL A   +    IALG   K+    +  +L    T V L+++ A +GN+
Sbjct: 304 R-DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLL---TLVSLASVAAELGNF 357



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  D++VST LVD+Y + G +  A  LF  +P +S VS   +++C           
Sbjct: 471 IKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISC----------- 519

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                               +  HG   +A+ LF+ M +E V+P+ +T V++LSAC   G
Sbjct: 520 --------------------HGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSG 559

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G+W    ++ +  I+ +++    +++++ + G L+ A   V +     DV VW ++
Sbjct: 560 LVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGAL 619

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 620 LGACRIH 626


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/474 (44%), Positives = 312/474 (65%), Gaps = 2/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V  S+V +Y   G++  A ++F  MP R +VS  +M+  Y K GE+  A+ +F+ M 
Sbjct: 143 DPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMS 202

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +KDVV W  MI  Y Q+    +AL LFR ML+  + P+    V+VLSA   +G +E G+W
Sbjct: 203 DKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKW 262

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
           +H+Y+  ++    +  +G+ALI+MYSKCG +++A  VF  ++ + ++  WNSMI G A+H
Sbjct: 263 LHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH 322

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL +F EM R+ ++P++ITF+GLLS C+H GLV EG+ +F +M ++Y I P+++H
Sbjct: 323 GLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQH 382

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGCM++L  RAG++E+A  ++ +M  E D + W  +L A   HG+I +G+  A   I   
Sbjct: 383 YGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELA 442

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLR 366
             +S +YVLLSNIYA  G WD VA++R +M+++GV+K  GCSS+ ++ KVHEFL G +L 
Sbjct: 443 PDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELD 502

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
              S ++   + E+   LK +GY P    VL DI ++ K++ L +HSEK+A+AFGLI   
Sbjct: 503 SSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHIN 562

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I IVKNLRVC DCH   KL+SK   R+I+MRD+NRFHHF NG CSC +YW
Sbjct: 563 KSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 36/288 (12%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++  L    +     G +  A  +F  ++  +   +  +I G++      E+L+L+ R
Sbjct: 38  QFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYAR 97

Query: 98  MLA--EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           ML+        E +  +VL ACG++ A + GR +H  +  + ++  +  VG +++ MY  
Sbjct: 98  MLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKT-HLWFDPFVGNSMVRMYID 156

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG------------FGKD----------- 192
            G ++ AR VFDR+ ++DVV WNSMI GY   G              KD           
Sbjct: 157 FGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAY 216

Query: 193 --------ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
                   AL LF EM  + L+P     + +LSA A  G V EG ++ +       IE  
Sbjct: 217 VQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEG-KWLHAYVSMNKIELS 275

Query: 245 VEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
               G  ++++ S+ G +E AY +   +    +   W +++    +HG
Sbjct: 276 SGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHG 323


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/471 (43%), Positives = 302/471 (64%), Gaps = 1/471 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L VS +L+ LY +   V  A K+F  MP R++++   +L+ Y   G +  A+  F++M  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           K+++   VMI G AQ+G  +E L LF++M  +  EP +      L+AC  +GALE+GR +
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H+ + +    + ++ VG A+I+MY+KCG ++ A  VF  +   D+V WNSMI     HG 
Sbjct: 448 HAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGH 506

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           G  A++LF++M +  + P  ITF+ +L+AC+HAGLV +GR +FN+M + Y I P  +HY 
Sbjct: 507 GVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA 566

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            MV+L  RAG    A  ++  M  +P + +W  LL  CR+HGN+ LG + AE L      
Sbjct: 567 RMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQ 626

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           N GTYVLLSNIYA +G W+ VA+VR LM+++ V+KEP CS IE+ NKVH F+  D  HP+
Sbjct: 627 NDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPE 686

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
              +Y  LE++   +K  GY+P T+ VLHD+  +QK+++L  HSEKLAV FG++   PG 
Sbjct: 687 VLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGA 746

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++++ KN+R+C DCH  FK +SK   R+I++RDR RFHHF NG CSC DYW
Sbjct: 747 TVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 147/301 (48%), Gaps = 36/301 (11%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           ++SA KLF  MP+R  ++ TTM+T Y +  ++  AR +F+ M E     WN MI GY   
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI---ENSRNIKVN 142
           G   EAL L R+M    ++ +++T   ++SAC  +G+ + G+ +H+YI   E + N    
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFC 327

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY------------------ 184
           + V  ALI +Y K   + +AR +F  +  ++++ WN+++ GY                  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 185 -------------AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
                        A +GFG + L+LF +M     +P D  F G L+AC+  G +  GR+ 
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +      E  +     M+++ ++ G VE A  + + M    D V W +++ A   HG
Sbjct: 448 HAQLV-HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHG 505

Query: 292 N 292
           +
Sbjct: 506 H 506



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 54/342 (15%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD--DMEEKDVV 73
           L+++Y +  +++ A +LF  +P    ++ TT++T Y   G +   R +F+   +  +D V
Sbjct: 54  LLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA----------CGQ---- 119
            +N MI GYA +G  + AL LFR M  +   P++ T  +VLSA          CGQ    
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 120 -----IGALESG---RWIHSYIENSRNIKVNVQ------------------VGTALINMY 153
                +G + S      +  Y++ +  + ++                      T +I  Y
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
            +   L  AR VF+ + +     WN+MI GY   G  ++AL L  +M  + ++  DIT+ 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 214 GLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGC------MVNLLSRAGQVEEAYK 266
            ++SACA+ G    G++     +K+E  + P   H  C      ++ L  +  +V+EA K
Sbjct: 294 TIISACANVGSFQMGKQVHAYILKNE--LNPN--HSFCLSVSNALITLYCKNNKVDEARK 349

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           +   M +  + + W  +L      G +   +   E +  +NL
Sbjct: 350 IFYAMPVR-NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 41/242 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V    +  L V  +++ +YA+ G V +AE +F TMP   LVS  +M+    + G      
Sbjct: 452 VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG------ 505

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG+  +A+ LF +ML E V P+ +T + VL+AC   G
Sbjct: 506 -----------------------HGV--KAIELFDQMLKEGVFPDRITFLTVLTACSHAG 540

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-VVVWNSM 180
            +E GR   + +  S  I         +++++ + G    AR+V D +  K    VW ++
Sbjct: 541 LVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEAL 600

Query: 181 IVGYAMHG---FGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           + G  +HG    G +A  QLF  M       +D T++ L +  A  G  NE  +    M+
Sbjct: 601 LAGCRIHGNMDLGIEAAEQLFKLM-----PQNDGTYVLLSNIYADVGRWNEVAKVRKLMR 655

Query: 237 DE 238
           D+
Sbjct: 656 DQ 657


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/479 (44%), Positives = 307/479 (64%), Gaps = 5/479 (1%)

Query: 6    LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
            +  D + +  ++   AR  D+ + E ++    Q    +S+   T  +  Y K GE+A AR
Sbjct: 623  MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 682

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             +FD M  KD V W  M+ GYA +G   EAL LF  M AE ++P+       LSAC ++G
Sbjct: 683  EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 742

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            AL+ GR     ++    +  N  +GTALI+MY+KCGS  +A +VF ++  KD++VWN+MI
Sbjct: 743  ALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMI 801

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            +G  M G  K A  L  +M +  +K +D TFIGLL +C H GL+ +GRR+F+ M   Y I
Sbjct: 802  LGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHI 861

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P++EHYGCMV+LLSRAG ++EA++LV DM +  ++V+ G LLG C++H N  L E + +
Sbjct: 862  SPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLK 921

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             LI     NSG YV+LSNIY+  G W+  A++R  MK KGV+K P CS +E   KVHEF 
Sbjct: 922  QLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFR 981

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP S +IY  L+E+   +K  GY P T++V+ D+ +++K+++L  HSEKLA+AF 
Sbjct: 982  VGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFN 1041

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ T PG +I++ KNLRVC DCH   KL+S+ T R+I++RD NRFH F +G+CSC DYW
Sbjct: 1042 LLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS-LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           R G+ L A  L   +P  +    LT++L+ YAK G +  A+ +FD+M     V W  +I 
Sbjct: 543 RAGEQLHARSL--KLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALIT 600

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            Y   G   EA+ + R   A  + P+  TAV VL+AC +I  L +G  +    E    + 
Sbjct: 601 AYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQE-GVA 659

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +V V TA +++Y KCG +  AR VFD++  KD V W +M+ GYA +G  ++AL LF  M
Sbjct: 660 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 719

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAG 259
               +KP      G LSAC   G ++ GR+    +  DE+   P +     ++++ ++ G
Sbjct: 720 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 777

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              EA+ +   M+ + D ++W  ++    + G+    EKIA  L+ Q
Sbjct: 778 STVEAWVVFQQMR-KKDIIVWNAMILGLGMTGH----EKIAFALVGQ 819


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 306/437 (70%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T +L  YAK  EVA AR +FD M  +K++  W+ MI GY++ G+ NEAL LFR M A  V
Sbjct: 170 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 229

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+EVT V+V+SAC + GAL+ GRW+H++I+  + I V++++ TALI+MY+KCG ++ A+
Sbjct: 230 NPDEVTMVSVISACAKAGALDLGRWVHAFIDR-KGITVDLELSTALIDMYAKCGLIERAK 288

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + ++D   W++MIVG A+HG  + AL+LF+ M  ++++P+++TFIG+LSACAH+G
Sbjct: 289 GVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSG 348

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LVNEGRR+++TM+ E  I+P +E+YGCMV+L  R+  ++EAY  V  M I P+SV+W TL
Sbjct: 349 LVNEGRRYWSTMQ-ELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTL 407

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L A +      + +  ++ L+     N   YVLLSN+YA+   WD V+ +R  MKE  V 
Sbjct: 408 LVASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVN 467

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
              GCSSIE++  +H+F+  D  HP+ KEI ++L EI   +   G+ P T  VLHD+GE+
Sbjct: 468 VVAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEE 527

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ +L  HSE+LA+A+GL+ T+    I++VKNLR CPDCH V K++SK   R+I++RDR
Sbjct: 528 EKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDR 587

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFH FV G+CSC D+W
Sbjct: 588 VRFHRFVEGSCSCKDFW 604



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 150/290 (51%), Gaps = 9/290 (3%)

Query: 60  ARVLFDDMEEKDVVCWNVMI---DGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLS 115
           AR LFD + E    C+N +I      A    A + ++++RRML A    PN  T    L 
Sbjct: 80  ARNLFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALK 139

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD-RVNDKDV 174
           AC  + AL  GR +HS     R ++ +  V T L+N+Y+KC  +  AR VFD  V DK++
Sbjct: 140 ACSVVPALGEGRQLHSQ-AFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNL 198

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
             W++MI GY+  G   +AL LF EM    + P ++T + ++SACA AG ++ G R+ + 
Sbjct: 199 AAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLG-RWVHA 257

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
             D   I   +E    ++++ ++ G +E A K V D   E D+  W  ++    +HG + 
Sbjct: 258 FIDRKGITVDLELSTALIDMYAKCGLIERA-KGVFDAMAERDTKAWSAMIVGLAIHGLVE 316

Query: 295 LGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +  K+   ++   +  N+ T++ + +  A  G  +   R  + M+E G++
Sbjct: 317 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIK 366



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 33/176 (18%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL +ST+L+D+YA+ G +  A+ +F                               D M 
Sbjct: 267 DLELSTALIDMYAKCGLIERAKGVF-------------------------------DAMA 295

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+D   W+ MI G A HGL   AL LF RML  KV PN VT + VLSAC   G +  GR 
Sbjct: 296 ERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRR 355

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG 183
             S ++    IK +++    +++++ +   L +A   V       + V+W +++V 
Sbjct: 356 YWSTMQE-LGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVA 410


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/474 (47%), Positives = 308/474 (64%), Gaps = 22/474 (4%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR  D  +  +L A + +  + +    +TT+L  YAK G++A+AR +FD+M  +DV  WN
Sbjct: 131 ARCSDAFATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWN 190

Query: 77  VMIDGYAQHGLANEALVLFRRM------LAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            ++ G AQ    N ALVLFRR+      L  + EPNEVT VA LSAC Q+GAL+ G   H
Sbjct: 191 ALLAGLAQGTEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAH 250

Query: 131 SYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVWNSMIVGYAM 186
            +   +R I    NV+V  ALI+MYSKCGSL  A  VF   ++ D+ +V +N+ I   +M
Sbjct: 251 DF---ARTIGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSM 307

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G+DAL+LF+EM   R++P ++T++ +L  C HAGLV++GRR F++M+    + P ++
Sbjct: 308 HGHGEDALKLFDEM-PARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR----VPPNMK 362

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYG +V+LL RAG++ EA+ ++M M    D VLW TLLGA ++HGN+ L E  A  L   
Sbjct: 363 HYGTIVDLLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADL 422

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
                G YVLLSN+YA+   W  V RVR  M+   V+K PG S  E+   +H+F+ GD  
Sbjct: 423 GSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKE 482

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           H + +EIY  L+EI   +   GY P+T  VLHDIGE++KQ +L  HSEKLA+AFGLIST 
Sbjct: 483 HLRWREIYRALDEIGSKICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTP 542

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PG +I+++KNLR+C DCH V KLISK  GR I++RDR RFH F +G CSC DYW
Sbjct: 543 PGETIRVIKNLRICGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/454 (46%), Positives = 300/454 (66%), Gaps = 3/454 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYAR-GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
            VK  L   L VS +L+ ++A   G +  A  L  T       +  T++T YA+ G V  
Sbjct: 236 AVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTD 295

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LFD+M  ++ V W+ M++GY Q G   EAL LF RM A+ V P++   V VL+AC Q
Sbjct: 296 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQ 355

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+W+H Y++ + NI++ V +GTAL++MY+KCG ++ A  VF  + +K+V+ W +
Sbjct: 356 LGVLEQGKWVHGYLK-ANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G AMHG G +AL+LF++M R+ +KP DI FIG L AC H GLV++GR  F++M  +Y
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGCMV+LL+R G + EA ++V  M ++PD+++WG L+  CR H N+ L E +
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++ I      SG YVLL NIYAA G       +R LM+EKGV K PGCS++E+   +H+
Sbjct: 535 VKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQ 594

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           F+ GDL HP  +EI    +EI+  ++  EGYVP  + VL DI E++K+N+L  HSEK+A+
Sbjct: 595 FIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAI 654

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           AF LI+T     I+IVKNLRVC DCH V KLISK
Sbjct: 655 AFALINTSDDMPIRIVKNLRVCHDCHHVTKLISK 688


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/479 (43%), Positives = 306/479 (63%), Gaps = 33/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK++LD+D+YV ++L+D+YAR                           C   Q    A R
Sbjct: 190 VKYNLDEDVYVGSALLDMYAR---------------------------C---QQMDMAIR 219

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           V FD ++ K+ V WN +I G+A+ G     L+ F  M          T  +V SA  +IG
Sbjct: 220 V-FDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIG 278

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE GRW+H+++  S   K+   V   ++ MY+K GS+ DAR VFDRV+ +D+V WN+M+
Sbjct: 279 ALEQGRWVHAHMIKSGQ-KLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTML 337

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             +A +G GK+A+  F E+ +  ++ + ITF+ +L+AC+H GLV EG+++F+ MKD Y +
Sbjct: 338 TAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNV 396

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP+++HY   V+LL RAG ++EA   V  M +EP + +WG LLGACR+H N  +G+  A+
Sbjct: 397 EPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAAD 456

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           ++   +  ++G  VLL NIYA+ G WD  ARVR +MK  GV+KEP CS +E+ N VH F+
Sbjct: 457 HVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFV 516

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           A D  HPKS+EIY M EE+N  +K  GYVP T  VL  I E++++  L+ HSEK+A+AF 
Sbjct: 517 ADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFA 576

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LI+   G +I+I+KN+R+C DCH+ F+ +S+   R+I++RD NRFHHF NG+CSCGDYW
Sbjct: 577 LINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 139/269 (51%), Gaps = 9/269 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  Y K G V+ AR +FD +  +DVV W  +I GYAQ+ +  EAL L   ML  + 
Sbjct: 100 LNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARF 159

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T  + L A G  G    G  +H+ +    N+  +V VG+AL++MY++C  +  A 
Sbjct: 160 RPSGFTFTSFLKAAGACGGRGIGEQMHA-LAVKYNLDEDVYVGSALLDMYARCQQMDMAI 218

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD ++ K+ V WN++I G+A  G G+  L  F EM R     +  T+  + SA A  G
Sbjct: 219 RVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIG 278

Query: 224 LVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            + +GR     M K    +   V +   ++ + +++G + +A K V D   + D V W T
Sbjct: 279 ALEQGRWVHAHMIKSGQKLTAFVAN--TILGMYAKSGSMVDARK-VFDRVDQRDLVTWNT 335

Query: 283 LLGACRLHG----NIALGEKIAEYLISQN 307
           +L A   +G     +A  E+I +Y I  N
Sbjct: 336 MLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           +L  ++ P      ++++AC Q   L   R IHS++  SR +  +  +  +LI+MY KCG
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSR-LAGDGFLLNSLIHMYCKCG 111

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++ DAR VFD +  +DVV W  +I GYA +    +AL L  +M R R +PS  TF   L 
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLK 171

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           A    G    G +  + +  +Y ++  V     ++++ +R  Q++ A + V D     + 
Sbjct: 172 AAGACGGRGIGEQ-MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIR-VFDWLDSKNE 229

Query: 278 VLWGTLLGACRLHGNIALGE-KIAEYLISQNLANSGTYVLLSNIYAAIG 325
           V W  L+      G+   GE  + ++   Q      T+   S++++A+ 
Sbjct: 230 VSWNALIAGFARKGD---GETTLMKFAEMQRNGFGATHFTYSSVFSALA 275


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/479 (44%), Positives = 307/479 (64%), Gaps = 5/479 (1%)

Query: 6    LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
            +  D + +  ++   AR  D+ + E ++    Q    +S+   T  +  Y K GE+A AR
Sbjct: 647  MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 706

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             +FD M  KD V W  M+ GYA +G   EAL LF  M AE ++P+       LSAC ++G
Sbjct: 707  EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 766

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            AL+ GR     ++    +  N  +GTALI+MY+KCGS  +A +VF ++  KD++VWN+MI
Sbjct: 767  ALDLGRQAIRMVDWDEFLD-NPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMI 825

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            +G  M G  K A  L  +M +  +K +D TFIGLL +C H GL+ +GRR+F+ M   Y I
Sbjct: 826  LGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHI 885

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P++EHYGCMV+LLSRAG ++EA++LV DM +  ++V+ G LLG C++H N  L E + +
Sbjct: 886  SPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLK 945

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             LI     NSG YV+LSNIY+  G W+  A++R  MK KGV+K P CS +E   KVHEF 
Sbjct: 946  QLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFR 1005

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP S +IY  L+E+   +K  GY P T++V+ D+ +++K+++L  HSEKLA+AF 
Sbjct: 1006 VGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFN 1065

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ T PG +I++ KNLRVC DCH   KL+S+ T R+I++RD NRFH F +G+CSC DYW
Sbjct: 1066 LLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 12/287 (4%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS-LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           R G+ L A  L   +P  +    LT++L+ YAK G +  A+ +FD+M     V W  +I 
Sbjct: 567 RAGEQLHARSL--KLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALIT 624

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            Y   G   EA+ + R   A  + P+  TAV VL+AC +I  L +G  +    E    + 
Sbjct: 625 AYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQE-GVA 683

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +V V TA +++Y KCG +  AR VFD++  KD V W +M+ GYA +G  ++AL LF  M
Sbjct: 684 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 743

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAG 259
               +KP      G LSAC   G ++ GR+    +  DE+   P +     ++++ ++ G
Sbjct: 744 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 801

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              EA+ +   M+ + D ++W  ++    + G+    EKIA  L+ Q
Sbjct: 802 STVEAWVVFQQMR-KKDIIVWNAMILGLGMTGH----EKIAFALVGQ 843


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/473 (42%), Positives = 305/473 (64%), Gaps = 33/473 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+YV  +L+ LYA+  D+  A+K+F  MPQR++++                         
Sbjct: 223 DMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIA------------------------- 257

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 WN +I GY Q+GL  E++ LF  M+    +P+  T V++LS+C Q+GAL+ G W
Sbjct: 258 ------WNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 311

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H Y + +    +NV +GT+LINMY++CG++  AR VFD + +++VV W +MI GY MHG
Sbjct: 312 LHDYADGN-GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHG 370

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           +G+ A++LF EM     +P++ITF+ +LSACAH+GL+++GRR F++MK+ Y + P VEH 
Sbjct: 371 YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHN 430

Query: 249 GCMVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
            CMV++  RAG + +AY+ +   +  EP   +W ++LGACR+H N  LG K+AE+++S  
Sbjct: 431 VCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVE 490

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             N G YV+LSNIYA  G  D V  VR +M  + ++K+ G S+IE++ K + F  GD  H
Sbjct: 491 PENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSH 550

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P++  IY  L+E+       GYVP  + ++HD+ E+++  +L  HSEKLA+AFGL+ T  
Sbjct: 551 PQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQ 610

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G +I+IVKNLR+C DCH+  K IS    R+I++RD+ RFHHF +G+CSC DYW
Sbjct: 611 GETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 147/306 (48%), Gaps = 10/306 (3%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
            RS   LT +++     G +  AR LF  +   D   ++ ++   ++ G + + ++ +RR
Sbjct: 120 HRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRR 179

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML      +  T  +V+ AC  + AL  G+ IHS++        ++ V  ALI +Y+K  
Sbjct: 180 MLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVC-GYGSDMYVQAALIALYAKAS 238

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +K A+ VFD +  + ++ WNS+I GY  +G  ++++ LF+ M     +P   T + LLS
Sbjct: 239 DMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS 298

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           +C+  G ++ G  + +   D    +  V     ++N+ +R G V +A ++   MK E + 
Sbjct: 299 SCSQLGALDFG-CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMK-ERNV 356

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYVLLSNIYAAIGNWDGVARV 333
           V W  ++    +HG    G +  E            N+ T+V + +  A  G  D   RV
Sbjct: 357 VTWTAMISGYGMHG---YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV 413

Query: 334 RTLMKE 339
            + MKE
Sbjct: 414 FSSMKE 419


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/473 (42%), Positives = 305/473 (64%), Gaps = 33/473 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+YV  +L+ LYA+  D+  A+K+F  MPQR++++                         
Sbjct: 159 DMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIA------------------------- 193

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 WN +I GY Q+GL  E++ LF  M+    +P+  T V++LS+C Q+GAL+ G W
Sbjct: 194 ------WNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCW 247

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H Y + +    +NV +GT+LINMY++CG++  AR VFD + +++VV W +MI GY MHG
Sbjct: 248 LHDYADGN-GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHG 306

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           +G+ A++LF EM     +P++ITF+ +LSACAH+GL+++GRR F++MK+ Y + P VEH 
Sbjct: 307 YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHN 366

Query: 249 GCMVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
            CMV++  RAG + +AY+ +   +  EP   +W ++LGACR+H N  LG K+AE+++S  
Sbjct: 367 VCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVE 426

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             N G YV+LSNIYA  G  D V  VR +M  + ++K+ G S+IE++ K + F  GD  H
Sbjct: 427 PENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSH 486

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P++  IY  L+E+       GYVP  + ++HD+ E+++  +L  HSEKLA+AFGL+ T  
Sbjct: 487 PQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQ 546

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G +I+IVKNLR+C DCH+  K IS    R+I++RD+ RFHHF +G+CSC DYW
Sbjct: 547 GETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 147/306 (48%), Gaps = 10/306 (3%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
            RS   LT +++     G +  AR LF  +   D   ++ ++   ++ G + + ++ +RR
Sbjct: 56  HRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRR 115

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML      +  T  +V+ AC  + AL  G+ IHS++        ++ V  ALI +Y+K  
Sbjct: 116 MLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVC-GYGSDMYVQAALIALYAKAS 174

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +K A+ VFD +  + ++ WNS+I GY  +G  ++++ LF+ M     +P   T + LLS
Sbjct: 175 DMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLS 234

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           +C+  G ++ G  + +   D    +  V     ++N+ +R G V +A ++   MK E + 
Sbjct: 235 SCSQLGALDFG-CWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMK-ERNV 292

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYVLLSNIYAAIGNWDGVARV 333
           V W  ++    +HG    G +  E            N+ T+V + +  A  G  D   RV
Sbjct: 293 VTWTAMISGYGMHG---YGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRV 349

Query: 334 RTLMKE 339
            + MKE
Sbjct: 350 FSSMKE 355


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/437 (48%), Positives = 292/437 (66%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y K+G V  A  +F  +EEKD+V W+ MI GYAQ G    A+ +F +M  EK++
Sbjct: 45  TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK 104

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T   +++AC    A +E G+ +H++   SR     + V +AL+ MYSK G ++ A 
Sbjct: 105 PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSR-FNNALCVSSALLTMYSKRGDIESAF 163

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF R  ++D+V WNS+I GYA HG+G+ AL++F EM R  L+   +TFIG++SAC H G
Sbjct: 164 EVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTG 223

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L NEG+R+F+ M  ++ IEP++EHY CMV+L  RAG + +A +++ +M     + +W TL
Sbjct: 224 LANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTL 283

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L A  +H N+ +G+  A+ LIS    N  +YVLL+N+YA++GNW   A+VR LM+EK V+
Sbjct: 284 LAASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVK 343

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K  G S IE+ NK + FLAGD+ HP S +IY  LEE++  LK  GY P T  V  D+ E+
Sbjct: 344 KVAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEE 403

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  L  HSE+LA+AFGLI T PGT ++IVKNLRVC DCH+V KLIS   GR I++RD 
Sbjct: 404 HKEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDS 463

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G CSCGDYW
Sbjct: 464 NRFHHFKGGLCSCGDYW 480



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 120/221 (54%), Gaps = 18/221 (8%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E ++PN+ T   +L+A   +   E    +H+     RN   +  VGTAL++ Y K G
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFE----MHAQ-AIKRNYVKSPSVGTALLDAYVKRG 55

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++ +A  VF R+ +KD+V W++MI GYA  G  + A+++F +M + ++KP++ TF G+++
Sbjct: 56  NVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIIN 115

Query: 218 ACA--HAGLVNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDM 271
           ACA   AG V +G++        ++I+ +  +  C    ++ + S+ G +E A++ V   
Sbjct: 116 ACAAPTAG-VEQGKQL-----HAWSIKSRFNNALCVSSALLTMYSKRGDIESAFE-VFKR 168

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           + E D V W +++     HG      ++ E +  QNL   G
Sbjct: 169 QRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDG 209



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 84/188 (44%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K   +  L VS++L+ +Y++ GD+ SA ++F    +R LVS  ++++ YA        
Sbjct: 134 SIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYA-------- 185

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                  QHG   +AL +F  M  + +E + VT + V+SAC   
Sbjct: 186 -----------------------QHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHT 222

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G    G+     +    +I+  ++  + ++++Y + G L  A  + + +       VW +
Sbjct: 223 GLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRT 282

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 283 LLAASCIH 290


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/473 (46%), Positives = 304/473 (64%), Gaps = 5/473 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG-EVAAARVLFDDMEEK 70
           V   LV  YA  G +  A ++F       +V+   +L  YA++G +    R  F  M  +
Sbjct: 113 VRCRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSR 172

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWI 129
           D V WN ++     +G  +EA+ +FR MLA ++ +P+ VT V+V+SA   +GAL  G W 
Sbjct: 173 DSVSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWA 232

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNSMIVGYAMHG 188
           H+Y+   + I+V  ++ +ALINMYSKCG ++ A  VFD V  K  +  WN+M+ G+  +G
Sbjct: 233 HAYVFR-KCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANG 291

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           + + AL+LF  M   RL P+ ITF  +L+AC+H GLV EG ++F  M   Y IEP + HY
Sbjct: 292 YSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHY 351

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RAG  E+A +++  M +EPD+ +   LLGACR H N+ LG+K+   LI    
Sbjct: 352 GCMVDLFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAA 411

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            +   YVLLSNIYA  GNW GV +VR LM ++GV K PG SS+EL+  +HEF++GD  H 
Sbjct: 412 NDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHS 471

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQP 427
           + ++IY ML EI   LK+ GY P T  VL DI ++  K++SL +HSEKLA+AFGLIST P
Sbjct: 472 RKRDIYKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAP 531

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GT I++V NLR+C DCH   KLISK  GR I++RD NRFHHF  G+CSCGDYW
Sbjct: 532 GTPIRVVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL LF  +L    +P+        ++C +     +   +H++      +  + +V   L+
Sbjct: 59  ALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCRLV 118

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           + Y+ CG L  AR VFD   D D+V WN ++ GYA  G  +D L+ F    R+  + S +
Sbjct: 119 HAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDF--FARMPSRDS-V 175

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
           ++  +LS C   G  +E    F  M      +P
Sbjct: 176 SWNTVLSWCVVNGEYDEAIAVFREMLASQECQP 208


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/481 (44%), Positives = 313/481 (65%), Gaps = 8/481 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAA 60
              DL    SL  + A+  D  ++  +   + +R      +V    ++  YAK G + +A
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQ 119
             +F+ +  KDV+ WN +I GYAQ+GLA+EA+ +++ M   +++ PN+ T V++L A   
Sbjct: 473 HKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 532

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G  IH  +  + N+ ++V V T LI++Y KCG L DA  +F +V  +  V WN+
Sbjct: 533 VGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNA 591

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I  + +HG  +  L+LF EM    +KP  +TF+ LLSAC+H+G V EG+  F  M+ EY
Sbjct: 592 IISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EY 650

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P ++HYGCMV+LL RAG +E AY  + DM ++PD+ +WG LLGACR+HGNI LG+  
Sbjct: 651 GIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFA 710

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           ++ L   +  N G YVLLSNIYA +G W+GV +VR+L +E+G++K PG S+IE++ KV  
Sbjct: 711 SDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDV 770

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F  G+  HPK KEIY  L  +   +K+ GY+P    VL D+ E +K++ L  HSE+LA+A
Sbjct: 771 FYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIA 830

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+IST P + I+I KNLRVC DCH   K IS+ T R+I++RD NRFHHF +G CSCGDY
Sbjct: 831 FGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDY 890

Query: 480 W 480
           W
Sbjct: 891 W 891



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 8/292 (2%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++    +++  Y++ G    AR LFDDM  +D+  WN MI G  Q+G A +AL +   
Sbjct: 247 QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE 306

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E ++ N VT V++L  C Q+G + +   IH Y+     ++ ++ V  ALINMY+K G
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK-HGLEFDLFVSNALINMYAKFG 365

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +L+DAR  F ++   DVV WNS+I  Y  +     A   F +M     +P  +T + L S
Sbjct: 366 NLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLAS 425

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
             A +      R     +     +   V     +V++ ++ G ++ A+K V ++ +  D 
Sbjct: 426 IVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK-VFEIILVKDV 484

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQN----LANSGTYVLLSNIYAAIG 325
           + W TL+     +G     E I  Y + +     + N GT+V +   YA +G
Sbjct: 485 ISWNTLITGYAQNG--LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 154/309 (49%), Gaps = 11/309 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G +  AR  F  M   DVV WN +I  Y Q+     A   F +M     +P+
Sbjct: 357 LINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPD 416

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V++ S   Q    ++ R +H +I     +  +V +G A+++MY+K G L  A  VF
Sbjct: 417 LLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVF 476

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGL 224
           + +  KDV+ WN++I GYA +G   +A++++  M  C+  + P+  T++ +L A AH G 
Sbjct: 477 EIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK-EIIPNQGTWVSILPAYAHVGA 535

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G R     +K    ++  V    C++++  + G++ +A  L   +  E  SV W  +
Sbjct: 536 LQQGMRIHGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAI 592

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +    +HG+     K+   ++ + +  +  T+V L +  +  G  +       LM+E G+
Sbjct: 593 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGI 652

Query: 343 Q---KEPGC 348
           +   K  GC
Sbjct: 653 KPSLKHYGC 661



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 7/249 (2%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL-VLFRR 97
           +S+   T ++  YA  G+V+ +R  FD + +KDV  WN MI  Y  +G  +EA+   ++ 
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQL 208

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           +L  ++ P+  T   VL ACG    L  GR IH +       + NV V  +LI+MYS+ G
Sbjct: 209 LLVSEIRPDFYTFPPVLKACG---TLVDGRRIHCW-AFKLGFQWNVFVAASLIHMYSRFG 264

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
               AR +FD +  +D+  WN+MI G   +G    AL + +EM    +K + +T + +L 
Sbjct: 265 FTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 324

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
            C   G ++      +    ++ +E  +     ++N+ ++ G +E+A K    M I  D 
Sbjct: 325 VCPQLGDISTA-MLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT-DV 382

Query: 278 VLWGTLLGA 286
           V W +++ A
Sbjct: 383 VSWNSIIAA 391



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 33/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K +L  D++V+T L+D+Y + G ++ A  LF  +PQ S V+   +++C+          
Sbjct: 547 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGI-------- 598

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG A + L LF  ML E V+P+ VT V++LSAC   G
Sbjct: 599 -----------------------HGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            +E G+W    ++    IK +++    ++++  + G L+ A   + D     D  +W ++
Sbjct: 636 FVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGAL 694

Query: 181 IVGYAMHG 188
           +    +HG
Sbjct: 695 LGACRIHG 702


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/478 (44%), Positives = 309/478 (64%), Gaps = 7/478 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++ T+LV +YA  G +  A + F  M  R+L   T M++ Y+K G +  ARV+FD  E
Sbjct: 249 DTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTE 308

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KD+VCW  MI  YA+     EAL +F  M    ++P+ VT ++V+SAC  +G L+  +W
Sbjct: 309 MKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKW 368

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H Y  +   ++  + +  ALINMY+KCG L  AR VF+++  ++VV W+SMI  +AMHG
Sbjct: 369 VHRYT-HLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHG 427

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
              D+L LF +M +  ++P+++TF+G+L  C+H+GLV EG++ F +M DEY I PK+EHY
Sbjct: 428 EASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHY 487

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RA  + EA +++  M + P+ V+WG+L+ ACR+HG + LGE  A+ ++    
Sbjct: 488 GCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEP 547

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            + G  VL+SNIYA    WD V  +R +M++K V KE G S I+L+ K HEFL GD RH 
Sbjct: 548 DHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHK 607

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +S EIY  L E+   LK  GYVP    VL D+ E++K++ +  HSEKLA+ FGL++ +  
Sbjct: 608 QSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKE 667

Query: 429 TS------IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
                   I+IVKNLRVC DCHA FKL+SK    +I++RDR RFH + +G CSC DYW
Sbjct: 668 EEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 162/383 (42%), Gaps = 99/383 (25%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +   D +V T L+D+YA  G +  A  +F  M QR +V+  TM+  Y + G       
Sbjct: 142 KIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG------- 194

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                   L +EA  LF  M    V P+E+    ++SACG+ G 
Sbjct: 195 ------------------------LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGN 230

Query: 123 LESGRWIHSY-IENS----------------------------RNIKV-NVQVGTALINM 152
           +   R I+ + IEN                             R + V N+ V TA+++ 
Sbjct: 231 MRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSG 290

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           YSK G L DAR++FD+   KD+V W +MI  YA     ++AL++F EMC   +KP  +T 
Sbjct: 291 YSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTM 350

Query: 213 IGLLSACAHAGLVNEGR---RF-------------------------FNTMKDEYAIEP- 243
           + ++SAC + G +++ +   R+                          +  +D +   P 
Sbjct: 351 LSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT 410

Query: 244 -KVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
             V  +  M+N  +  G+  ++  L   MK   +EP+ V +  +L  C   G +  G+KI
Sbjct: 411 RNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKI 470

Query: 300 -----AEYLISQNLANSGTYVLL 317
                 EY I+  + + G  V L
Sbjct: 471 FASMTDEYNITPKIEHYGCMVDL 493



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 32/244 (13%)

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
           + +N ++   ++ G     ++ ++R+       + ++   +L A  ++ AL  G  +H +
Sbjct: 80  IVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGF 139

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  +  V T L++MY+ CG +  AR VFD ++ +DVV WN+MI  Y   G   +
Sbjct: 140 AFKIATLS-DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDE 198

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM------KDEYAIEPKVE 246
           A +LF EM    + P ++    ++SAC   G +   R  ++ +       D + +   V 
Sbjct: 199 AFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVT 258

Query: 247 HY---GC---------------------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            Y   GC                     MV+  S+AG++++A +++ D     D V W T
Sbjct: 259 MYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDA-RVIFDQTEMKDLVCWTT 317

Query: 283 LLGA 286
           ++ A
Sbjct: 318 MISA 321


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/454 (46%), Positives = 300/454 (66%), Gaps = 3/454 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYAR-GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
            VK  L   L VS +L+ ++A   G +  A  L  T       +  T++T YA+ G V  
Sbjct: 236 AVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTD 295

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR LFD+M  ++ V W+ M++GY Q G   EAL LF RM A+ V P++   V VL+AC Q
Sbjct: 296 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQ 355

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+W+H Y++ + NI++ V +GTAL++MY+KCG ++ A  VF  + +K+V+ W +
Sbjct: 356 LGVLEQGKWVHGYLK-ANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G AMHG G +AL+LF++M R+ +KP DI FIG L AC H GLV++GR  F++M  +Y
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGCMV+LL+R G + EA ++V  M ++PD+++WG L+  CR H N+ L E +
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++ I      SG YVLL NIYAA G       +R LM+EKGV K PGCS++E+   +H+
Sbjct: 535 VKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQ 594

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           F+ GDL HP  +EI    +EI+  ++  EGYVP  + VL DI E++K+N+L  HSEK+A+
Sbjct: 595 FIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAI 654

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           AF LI+T     I+IVKNLRVC DCH V KLISK
Sbjct: 655 AFALINTSDDMPIRIVKNLRVCHDCHHVTKLISK 688


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/473 (42%), Positives = 305/473 (64%), Gaps = 1/473 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  +  L V+ +LV LY++GG ++ A+++F TM  + +VS  T+L+ Y   G +  A  +
Sbjct: 331 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEV 390

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F  M  K+ + W VM+ GY   GL+ +AL LF +M AE V+P + T    ++ACG++GAL
Sbjct: 391 FKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGAL 450

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + GR +H+++      + +   G AL+ MY+KCG++ DARLVF  + + D V WN+MI  
Sbjct: 451 KHGRQLHAHLVQC-GFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 509

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
              HG G++AL+LF++M    + P  I+F+ +L+AC HAGLV+EG  +F +MK ++ I P
Sbjct: 510 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISP 569

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
             +HY  +++LL R+G++ EA  L+  M  EP   +W  +L  CR +G++  G   A+ L
Sbjct: 570 GEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQL 629

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
                 + GTY+LLSN Y+A G W   ARVR LM+++GV+KEPGCS IE+ +K+H FL G
Sbjct: 630 FRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVG 689

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D +HP+++E+Y  LE I   ++  GYVP T+ VLHD+   +K+  L  HSEKLAV FGL+
Sbjct: 690 DTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLL 749

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
              PG ++ ++KNLR+C DCH     +SK  GR+I++RD  RFHHF +G CSC
Sbjct: 750 KLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 160/320 (50%), Gaps = 39/320 (12%)

Query: 10  LYVSTSLVDLYARGGDVLS---AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           L VS +L+ LY +     +   A K+   MP +  ++ TTM+  Y ++G+V AAR +F++
Sbjct: 198 LSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEE 257

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ++ K  V WN MI GY Q G+  +A  LFRRM++EKV  +E T  +VLSAC   G    G
Sbjct: 258 VDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHG 317

Query: 127 RWIHSYI---ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---- 179
           + +H  I   + +   +  + V  AL+ +YSK G +  A+ +FD +N KDVV WN+    
Sbjct: 318 KSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSG 377

Query: 180 ---------------------------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
                                      M+ GY   G  +DAL+LFN+M    +KP D T+
Sbjct: 378 YIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTY 437

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            G ++AC   G +  GR+    +  +   E        ++ + ++ G V +A +LV  + 
Sbjct: 438 AGAIAACGELGALKHGRQLHAHLV-QCGFEASNSAGNALLTMYAKCGAVNDA-RLVFLVM 495

Query: 273 IEPDSVLWGTLLGACRLHGN 292
              DSV W  ++ A   HG+
Sbjct: 496 PNLDSVSWNAMISALGQHGH 515


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 300/436 (68%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YA+   +  A+V+F+ +  K+VV WN +I G+A+ G     + LF +ML +  E
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFE 304

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P   T  +V +AC   G+LE G+W+H+++  S    +   +G  LI+MY+K GS+KDA+ 
Sbjct: 305 PTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPI-AYIGNTLIDMYAKSGSIKDAKK 363

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF R+  +D+V WNS+I GYA HG G +ALQLF +M + +++P++ITF+ +L+AC+H+GL
Sbjct: 364 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 423

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG+ +F  MK ++ IE +V H+  +V+LL RAG++ EA K + +M I+P + +WG LL
Sbjct: 424 LDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           G+CR+H N+ LG   AE +   +  +SG +VLLSNIYA+ G     A+VR +MKE GV+K
Sbjct: 483 GSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 542

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N+VH F+A D  HP  +EI  M E+I+G +K  GYVP T  VL  + ++ 
Sbjct: 543 EPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQD 602

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++  L+ HSEKLA+AF ++ T PG +I+I KN+R+C DCH+ FK  S+  GR+I++RD N
Sbjct: 603 RELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTN 662

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF++G CSC DYW
Sbjct: 663 RFHHFLHGMCSCRDYW 678



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 148/251 (58%), Gaps = 3/251 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV L  +L  YAK G +  A+ LFD M  KD+V W V+I GY+Q G A+EAL LF +ML 
Sbjct: 140 LVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLH 199

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
              +PNE T  ++L A G   +   GR +H++        +NV VG++L++MY++   ++
Sbjct: 200 LGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF-SLKYGYDMNVHVGSSLLDMYARWAHMR 258

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A+++F+ +  K+VV WN++I G+A  G G+  ++LF +M R   +P+  T+  + +ACA
Sbjct: 259 EAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACA 318

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            +G + +G ++ +    +   +P       ++++ +++G +++A K+   + ++ D V W
Sbjct: 319 SSGSLEQG-KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSW 376

Query: 281 GTLLGACRLHG 291
            +++     HG
Sbjct: 377 NSIISGYAQHG 387



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 40/274 (14%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +EP       +L+ C  +  L+ GR IH++I++S   + ++ +   ++NMY+KCGSL++A
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSS-TFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + +FD++  KD+V W  +I GY+  G   +AL LF +M  +  +P++ T   LL A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 223 GLVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLL------------ 255
              + GR+                 +++ D YA    +     + N L            
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 256 ---SRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS---Q 306
              +R G+ E   +L + M     EP    + ++  AC   G++  G+ +  ++I    Q
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ 339

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARV-RTLMKE 339
            +A  G  ++  ++YA  G+     +V R L+K+
Sbjct: 340 PIAYIGNTLI--DMYAKSGSIKDAKKVFRRLVKQ 371



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 37/180 (20%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+  +L+D+YA+ G +  A+K+F  + ++ +VS  ++++ YA                  
Sbjct: 343 YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYA------------------ 384

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                        QHGL  EAL LF +ML  KV+PNE+T ++VL+AC   G L+ G++  
Sbjct: 385 -------------QHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQY-- 429

Query: 131 SYIENSRNIKVNVQVG--TALINMYSKCGSLKDARLVFDRVNDKDV-VVWNSMIVGYAMH 187
            Y E  +  K+  QV     ++++  + G L +A    + +  K    VW +++    MH
Sbjct: 430 -YFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMH 488


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 304/479 (63%), Gaps = 32/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  +D D+Y+ +SLVD+YA+   +  +E++F+             L C           
Sbjct: 269 IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSR------------LYC----------- 305

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                   +D + WN ++ GY Q+G  NEAL LFR+M+  KV+P  V   +V+ AC  + 
Sbjct: 306 --------RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA 357

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  G+ +H Y+        N+ + +AL++MYSKCG++K AR +FDR+N  D V W ++I
Sbjct: 358 TLHLGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G+A+HG G +A+ LF EM R  +KP+ + F+ +L+AC+H GLV+E   +FN+M   Y +
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 476

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             ++EHY  + +LL RAG++EEAY  +  M +EP   +W TLL +C +H N+ L EK+AE
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAE 536

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            + + +  N G YVL+ N+YA+ G W  +A++R  M++KG++K+P CS IE+ NK H F+
Sbjct: 537 KIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFV 596

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +GD  HP   +I   L+ +   ++ EGYV  T  VLHD+ E+ K+  L  HSE+LAVAFG
Sbjct: 597 SGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFG 656

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I+T+PGT+I++ KN+R+C DCH   K ISK T R+I++RD +RFHHF  G CSCGDYW
Sbjct: 657 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 160/298 (53%), Gaps = 12/298 (4%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTML---TCYAKQG 55
           V+  +D DLY   +L+++YA+    G  +S   +F  MPQR+  S    +   TC    G
Sbjct: 132 VRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG 191

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
            + + R +F+ M  KDVV +N +I GYAQ G+  +AL + R M    ++P+  T  +VL 
Sbjct: 192 -IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP 250

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
              +   +  G+ IH Y+   + I  +V +G++L++MY+K   ++D+  VF R+  +D +
Sbjct: 251 IFSEYVDVIKGKEIHGYVIR-KGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-T 234
            WNS++ GY  +G   +AL+LF +M   ++KP  + F  ++ ACAH   ++ G++     
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           ++  +     +     +V++ S+ G ++ A K+   M +  D V W  ++    LHG+
Sbjct: 370 LRGGFGSNIFIA--SALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGH 424



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 157/389 (40%), Gaps = 74/389 (19%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S  S + +++ Y     +  A +LF  ++   V+ W  +I  +    L ++AL  F  M 
Sbjct: 38  SHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMR 97

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK---- 155
           A    P+     +VL +C  +  L  G  +H +I     +  ++  G AL+NMY+K    
Sbjct: 98  ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR-LGMDCDLYTGNALMNMYAKLLGM 156

Query: 156 -----CGSLKD---------------------------ARLVFDRVNDKDVVVWNSMIVG 183
                 G++ D                            R VF+ +  KDVV +N++I G
Sbjct: 157 GSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAG 216

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF----------- 232
           YA  G  +DAL++  EM    LKP   T   +L   +    V +G+              
Sbjct: 217 YAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSD 276

Query: 233 ----NTMKDEYAIEPKVE---------------HYGCMVNLLSRAGQVEEAYKLVMDM-- 271
               +++ D YA   ++E                +  +V    + G+  EA +L   M  
Sbjct: 277 VYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVT 336

Query: 272 -KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDG 329
            K++P +V + +++ AC     + LG+++  Y++     +N      L ++Y+  GN   
Sbjct: 337 AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN--- 393

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           +   R +     V  E   ++I + + +H
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALH 422


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 299/476 (62%), Gaps = 3/476 (0%)

Query: 7   DKD--LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           D+D  L V  +L+ LY + G V  A K+F  MP + +++  T+L+ Y   G +  A+  F
Sbjct: 323 DRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFF 382

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
             M EK+++ W VMI G AQ+G   +AL LF +M  +  EPN+      ++AC  +GALE
Sbjct: 383 AQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALE 442

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           +GR +H+ I +  +    + VG A+I MY++CG ++ AR +F  +   D V WNSMI   
Sbjct: 443 NGRQLHAQIVHLGH-DSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAAL 501

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             HG G  A++L+ +M +  + P   TF+ +LSAC+HAGLV EG R+FN+M + Y I P 
Sbjct: 502 GQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPG 561

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY  M++L  RAG+  +A  ++  M  E  + +W  LL  CR HGN+ LG + AE L 
Sbjct: 562 EDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLF 621

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                + GTYVLLSN+YA++G W+ VAR R LM+++GV+KEP CS  E+ NKVH FL  D
Sbjct: 622 KLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDD 681

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP+   IY  LE++N  +K  GY+P T+ VLHD+  + K+ +L  HSEKLAVAFGL+ 
Sbjct: 682 TVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMK 741

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              G ++++ KNLR+C DCH   K +SK  GR+I++RD  RFHHF NG CSC +YW
Sbjct: 742 LPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 158/324 (48%), Gaps = 54/324 (16%)

Query: 28  SAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
           SA KLF  MP+R+    TT++T Y + G++  AR + D M E+  + WN MI GY  HGL
Sbjct: 210 SARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGL 269

Query: 88  ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVN--VQ 144
             +AL LFR+M    V+ +E T  +V+SAC   G    G+ +H+YI +N  N   +  + 
Sbjct: 270 FEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLS 329

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY-------------------- 184
           VG  LI +Y K G +  AR +F  +  KD++ WN+++ GY                    
Sbjct: 330 VGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKN 389

Query: 185 -----------AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
                      A +GFG+ AL+LFN+M     +P+D  F G ++AC+  G +  GR+   
Sbjct: 390 LLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQ--- 446

Query: 234 TMKDEYAIEPKVEHYG---------CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                  +  ++ H G          M+ + +R G VE A  + + M    D V W +++
Sbjct: 447 -------LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF-VDPVSWNSMI 498

Query: 285 GACRLHGNIALGEKIAEYLISQNL 308
            A   HG+     ++ E ++ + +
Sbjct: 499 AALGQHGHGVKAIELYEQMLKEGI 522



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 156/321 (48%), Gaps = 50/321 (15%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD--ME 68
           ++   L+D+Y +  D + A KLF  +PQ  +++ TT++T Y+  G +  AR +F++  ++
Sbjct: 49  HIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLD 108

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA----------CG 118
            +D V +N MI GY+     + A+ LFR M     +P++ T  +VLSA          CG
Sbjct: 109 MRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCG 168

Query: 119 QI--GALESGRWIHSYIEN-----------------------SRNI-----KVNVQVGTA 148
           Q+    ++ G  I   + N                       +R +     K N  + T 
Sbjct: 169 QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI  Y + G L  AR + D + ++  + WN+MI GY  HG  +DAL LF +M  + ++  
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVD 288

Query: 209 DITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHY----GCMVNLLSRAGQVEE 263
           + T+  ++SACA  G    G++     +K+E  + P  +        ++ L  + G+V+ 
Sbjct: 289 ESTYTSVISACADGGFFLLGKQVHAYILKNE--LNPDRDFLLSVGNTLITLYWKYGKVDG 346

Query: 264 AYKLVMDMKIEPDSVLWGTLL 284
           A K+  +M ++ D + W TLL
Sbjct: 347 ARKIFYEMPVK-DIITWNTLL 366



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 34/156 (21%)

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           R +L  +V  N   A   L     + +    R +H ++  S   K+   +   LI++Y K
Sbjct: 2   RNVLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIAS-GFKLRGHIVNRLIDIYWK 60

Query: 156 CGSLKDARLVFDRVNDKDV---------------------------------VVWNSMIV 182
                 AR +FD +   DV                                 V +N+MI 
Sbjct: 61  SSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMIT 120

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           GY+    G  A++LF  M     +P D TF  +LSA
Sbjct: 121 GYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSA 156


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/477 (41%), Positives = 307/477 (64%), Gaps = 1/477 (0%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F  +  L V+ +LV LY++ G +  A K+F +M  + +VS  T+L+ Y + G +  A  +
Sbjct: 329 FVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARI 388

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           F +M  K  + W VM+ GY   GLA +AL LF +M +E V+P + T    ++ACG++GAL
Sbjct: 389 FKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGAL 448

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           + G+ +H+++      + +   G AL+ MY++CG++KDARLVF  + + D V WN+MI  
Sbjct: 449 KHGKQLHAHLVQC-GFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
              HG G++AL+LF++M    + P  I+F+ +L+AC HAGLV++G ++F +M+ ++ I P
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISP 567

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
             +HY  +++LL RAG++ EA  L+  M  EP   +W  +L  CR++G++ LG   A+ L
Sbjct: 568 GEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQL 627

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
                 + GTY+LLSN Y+A G W   ARVR LM+++GV+KEPGCS IE+ NKVH FL G
Sbjct: 628 FKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVG 687

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D +HP + E+Y  LE +   ++  GYVP T+  L D+   +K+  L  HSE+LAV+FGL+
Sbjct: 688 DTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLL 747

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               G ++ ++KNL++C DCH     +S+  GR+I++RD  RFHHF +G CSCG+YW
Sbjct: 748 KLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 168/336 (50%), Gaps = 39/336 (11%)

Query: 10  LYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           L VS +L+ LY +    G    A K+   MP++  ++ TT++  + ++G+V AAR  F++
Sbjct: 196 LSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEE 255

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ++ +  V WN MI GY Q G+  EA  LFRRM+++++ P+E T  ++LSAC   G    G
Sbjct: 256 IDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHG 315

Query: 127 RWIH-SYIENSRNI--KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---- 179
           + +H  +I    +   +  + V  AL+ +YSK G +  A  +FD +  KDVV WN+    
Sbjct: 316 KSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSG 375

Query: 180 ---------------------------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
                                      M+ GY   G  +DAL+LFN+M    +KP D T+
Sbjct: 376 YIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTY 435

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
            G ++AC   G +  G++    +  +   E        ++ + +R G V++A +LV  + 
Sbjct: 436 AGAVAACGELGALKHGKQLHAHLV-QCGFEASNSAGNALLTMYARCGAVKDA-RLVFLVM 493

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
              DSV W  ++ A   HG+     ++ + +++Q +
Sbjct: 494 PNVDSVSWNAMISALGQHGHGREALELFDQMVAQGI 529



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 148/317 (46%), Gaps = 47/317 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME-- 68
           +++  L+ LY    D+ +   LF   P    V+ T++++ YA  G +  +   FD +   
Sbjct: 61  HLTLRLLHLYTLSPDLATPAVLFRADP--GPVAATSLVSAYAVAGRLRDSAAFFDSVPVA 118

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA--EKVEPNEVTAVAVLSACGQIG--ALE 124
            +D V  N MI  +A+  LA  A+ +FR +LA  + + P++ +  ++LSA GQ+   A+ 
Sbjct: 119 RRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVS 178

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVNDKDV------- 174
               +H  +       V + V  ALI +Y KC   G  +DAR V D + +KD        
Sbjct: 179 HCTQLHCAVHKLGAGAV-LSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIV 237

Query: 175 ------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                                   VVWN+MI GY   G   +A +LF  M   R+ P + 
Sbjct: 238 VGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEF 297

Query: 211 TFIGLLSACAHAGLVNEGRRF---FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           TF  LLSACA+AG    G+     F  ++ ++  E  +     +V L S++G++  A K+
Sbjct: 298 TFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKI 357

Query: 268 VMDMKIEPDSVLWGTLL 284
              M ++ D V W T+L
Sbjct: 358 FDSMTLK-DVVSWNTIL 373


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/489 (42%), Positives = 318/489 (65%), Gaps = 11/489 (2%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L        +++D+YA+ G +  A ++F  M  +S+VS T +L    +   V   R
Sbjct: 145 VKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGR 204

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
           V+FD+M E++ V W +MI GY   GL  E+  L R M+ + ++E N VT  ++L+AC Q 
Sbjct: 205 VVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQS 264

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G L  GRW+H+Y   ++  ++N+ VGTA+++MY+KCG +  A   F ++  ++VV WN+M
Sbjct: 265 GDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAM 324

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + G AMHG G+ AL +F +M +   KP D+TF  +LSAC+H+GLV++G  +F  ++  Y 
Sbjct: 325 LSGLAMHGLGRAALDIFPQMFK-EAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYG 383

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I PKVEHY CMV+LL RAG++EEA  LV +M I P+ V+ G+LLG+C +HG + LGE + 
Sbjct: 384 ITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLL 443

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L+  +  N+  ++LLSN+YA  G  +    +R ++K++G++K PG SSI +  +VH+F
Sbjct: 444 QELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQF 503

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI-------VLHD--IGEKQKQNSLEV 411
            AGD  HP+++E+Y ML+E+   L+  GY P T +        L D  + +++K+ +L  
Sbjct: 504 SAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFS 563

Query: 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVN 471
           HSEKLA+ FGLIST PG  + I KNLR+C DCH+  K++SK   R+I++RDRNRFH F  
Sbjct: 564 HSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKE 623

Query: 472 GTCSCGDYW 480
           G+CSC DYW
Sbjct: 624 GSCSCCDYW 632



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 54/289 (18%)

Query: 46  TMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +L  YA  G    AR +FD++    KD V W  ++  + +H +++EAL++F  M    V
Sbjct: 55  ALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGV 114

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCG-- 157
           +P+EVT V +   C ++G +  G   H  +     +K+ +    +   A+++MY+K G  
Sbjct: 115 KPDEVTLVCLFGGCARLGDVVVGAQGHGCM-----VKMGLGGVEKACNAVMDMYAKSGLM 169

Query: 158 -----------------------------SLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
                                         +++ R+VFD + +++ V W  MI GY   G
Sbjct: 170 GEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSG 229

Query: 189 FGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
             +++  L  EM   + ++ + +T   +L+AC+ +G +  GR         YA++ K + 
Sbjct: 230 LTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWV-----HAYALKTKEKE 284

Query: 248 YG-----CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                   MV++ ++ G++  A+K    M  + + V W  +L    +HG
Sbjct: 285 LNIMVGTAMVDMYAKCGRIHIAFKFFKKMP-QRNVVSWNAMLSGLAMHG 332



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRV-- 169
           +L +C +  +L+ G  +H+ I  +         +  AL+  Y+ CG    AR VFD +  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           + KD V W +++  +  H    +AL +F EM R  +KP ++T + L   CA  G V  G 
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVG- 137

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
                           + +GCMV +    G VE+A   VMDM
Sbjct: 138 ---------------AQGHGCMVKM--GLGGVEKACNAVMDM 162


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/469 (44%), Positives = 302/469 (64%), Gaps = 1/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V  +++++Y + G    A ++F  M  ++ VS  +++  + + G++ +A  +F  M + D
Sbjct: 378 VCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSD 437

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           +V WN MI    Q  +  EA+ LFR M +E +  ++VT V V SACG +GAL+  +WIH 
Sbjct: 438 LVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHG 497

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI+  ++I  ++ +GTAL++M+++CG  + A  VF+++  +DV  W + I   AM G G 
Sbjct: 498 YIKK-KDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGT 556

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            A++LF+EM +  +KP  + F+ LL+A +H GLV +G   F +MKD Y I P+  HYGCM
Sbjct: 557 GAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCM 616

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG + EA  L+  M++EP+ V+WG+LL ACR+H N+ +    AE +   +   +
Sbjct: 617 VDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERT 676

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G +VLLSNIYA+ G WD VA+VR  +KEKG  K PG SSIE++ K+ EF  GD  HP+  
Sbjct: 677 GIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMT 736

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
            I  ML+EI   L+  GYVP    VL D+ EK+K+  L  HSEKLA+AF LIST  G  I
Sbjct: 737 HIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPI 796

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++ KNLR+C DCH+  KL+SK   R+I++RD NRFH F  G CSCGDYW
Sbjct: 797 RVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 145/282 (51%), Gaps = 11/282 (3%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R +    +++  Y + GE+   R +FD M E++VV W  +I GYA+ G   EA+ LF  
Sbjct: 171 ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFE 230

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   + PN VT V V+SAC ++  L+ G  + + I     ++VN  +  AL++MY KCG
Sbjct: 231 MVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCI-GELELEVNALMVNALVDMYMKCG 289

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++  AR +FD   DK++V++N+++  Y   G  ++ L +  EM +   +P  IT +  +S
Sbjct: 290 AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVS 349

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKI 273
           AC+    V+ G+         Y +   +E +      ++N+  + G+ E A + V D  +
Sbjct: 350 ACSELDDVSCGKWCHG-----YVLRNGLEGWDNVCNAIINMYMKCGKQEMACR-VFDRML 403

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
               V W +L+     +G++    KI   +   +L +  T +
Sbjct: 404 NKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI 445



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 119/210 (56%), Gaps = 3/210 (1%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           ++ +I G++  GL  +A+V+FR+++     P+  T   VLSAC +  AL  G  +H  I 
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                + ++ V  +LI+ Y +CG +   R VFD++++++VV W S+I GYA  G  K+A+
Sbjct: 167 K-MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LF EM  + ++P+ +T +G++SACA    +  G +   T   E  +E        +V++
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVC-TCIGELELEVNALMVNALVDM 284

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             + G +++A K + D  ++ + VL+ T++
Sbjct: 285 YMKCGAIDKARK-IFDECVDKNLVLYNTIM 313



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+++ T+LVD++AR GD  SA ++F  M +R + + T  +   A +G    A  LFD+  
Sbjct: 507 DMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDE-- 564

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                                        ML + ++P+ V  VA+L+A    G +E G  
Sbjct: 565 -----------------------------MLQQGIKPDGVVFVALLTALSHGGLVEQGWH 595

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           I   +++   I         ++++  + G L +A  + + +  + + V+W S++    +H
Sbjct: 596 IFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVH 655



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 47/244 (19%)

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
           +++S+I G++  G G  A+ +F ++  +   P + TF  +LSAC  +  + EG +    +
Sbjct: 106 MFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAI 165

Query: 236 ------KDEYAIEPKVEHYG------CMVNLL------------------SRAGQVEEAY 265
                 +D +     +  YG      CM  +                   ++ G  +EA 
Sbjct: 166 VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 266 KLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIY 321
            L  +M    I P+SV    ++ AC    ++ LGE++   +    L  +   V  L ++Y
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMY 285

Query: 322 AAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD--------LRH-PKSKE 372
              G  D   + R +  E  V K     +  +SN V + LA +        L+H P+   
Sbjct: 286 MKCGAID---KARKIFDE-CVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDR 341

Query: 373 IYMM 376
           I M+
Sbjct: 342 ITML 345


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/475 (44%), Positives = 305/475 (64%), Gaps = 7/475 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++ T+L+++YA  G +  A K++  +  + L+  T ML+ YAK G V  AR +FD M 
Sbjct: 256 DSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMI 315

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+D+VCW+ MI GYA+     EAL LF  ML ++  P+++T ++V+SAC  +GAL    W
Sbjct: 316 ERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANW 375

Query: 129 IHSYIENS---RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           IH+Y++ S   R + VN     ALI+MY+KCG+L  AR VF+ +  K+V+ W+SMI  +A
Sbjct: 376 IHTYVDRSGFGRALSVN----NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFA 431

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           MHG    A++LF  M  + ++P+ +TFIG+L AC HAGLV EG + F++M +E+ I P  
Sbjct: 432 MHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTR 491

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EHYGCMV+L  RA  + +A +L+  M   P+ ++WG+L+ AC++HG   LGE  A+ L+ 
Sbjct: 492 EHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLE 551

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               + G  V+LSNIYA    W+ V  +R  M  KG+ KE   S IE++N+VH F+  D 
Sbjct: 552 LEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADR 611

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            H +S EIY  L+E+   LK  GY P T  +L D+ E+ K+  +  HSEKLAV +GLIS 
Sbjct: 612 YHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISR 671

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +  + I+IVKNLR+C DCH+  KL+SK    +I++RDR RFHH   G CSC DYW
Sbjct: 672 RNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 160/327 (48%), Gaps = 65/327 (19%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YA    +  AR+LFD M   D V WN++IDGY Q+G  ++AL LF  M +  ++
Sbjct: 160 TGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMK 219

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL----- 159
           P+ V    VLSACG  G L  GR IH +++++    ++  + TALINMY+ CG++     
Sbjct: 220 PDSVILCTVLSACGHAGNLSYGRTIHEFVKDN-GYAIDSHLQTALINMYANCGAMDLARK 278

Query: 160 --------------------------KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                                     KDAR +FD++ ++D+V W++MI GYA     ++A
Sbjct: 279 IYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEA 338

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG--------RRFF-------NTMKDE 238
           L+LF+EM + R  P  IT + ++SAC+H G + +         R  F       N + D 
Sbjct: 339 LKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDM 398

Query: 239 YA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
           YA                   V  +  M+N  +  G  + A KL   MK   IEP+ V +
Sbjct: 399 YAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTF 458

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQN 307
             +L AC   G +  GEK+   +I+++
Sbjct: 459 IGVLYACGHAGLVEEGEKLFSSMINEH 485



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 4/157 (2%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           ++L A  ++ A   G  IH  + +      +  + T LI MY+ C  + DARL+FD++  
Sbjct: 126 SLLKAVSKVSAFNHGLEIHG-LASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCH 184

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            D V WN +I GY  +G   DAL+LF +M    +KP  +    +LSAC HAG ++ GR  
Sbjct: 185 PDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTI 244

Query: 232 FNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
              +KD  YAI+  ++    ++N+ +  G ++ A K+
Sbjct: 245 HEFVKDNGYAIDSHLQ--TALINMYANCGAMDLARKI 279


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/472 (44%), Positives = 301/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSL--VSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V+ +L+  YA+ G V +A ++     +  L  +S T +L  Y K G++ +AR +F  M  
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+G  +EA+ LFR M+    EPN  T  AVLS C  +  L+ G+ I
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S  ++ +  V  A+I MY++ GS   AR +FD+V   K+ + W SMIV  A HG
Sbjct: 454 HCRAIRSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G++A+ LF EM R  ++P  IT++G+LSAC+HAG VNEG+R+++ +K+E+ I P++ HY
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 572

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+RAG   EA + +  M +EPD++ WG+LL ACR+H N  L E  AE L+S + 
Sbjct: 573 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDP 632

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  ++N+Y+A G W   AR+    KEK V+KE G S   + +K+H F A D+ HP
Sbjct: 633 NNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHP 692

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   +Y M   +   +K  G+VP  Q VLHD+ ++ K+  L  HSEKLA+AFGLIST   
Sbjct: 693 QRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 752

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++++KNLRVC DCHA  K ISK T R+I++RD  RFHHF +G CSC DYW
Sbjct: 753 TTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 171/365 (46%), Gaps = 69/365 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   + V+ S++++Y + GD  +A  +F  MP RS+ S   M++     G +  A 
Sbjct: 191 VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 250

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            LF+ M ++ +V WN MI GY Q+GL  +AL LF RML E  + P+E T  +VLSAC  +
Sbjct: 251 SLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANL 310

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------ 168
           G +  G+ +H+YI  +  +  N QV  ALI+ Y+K GS+++AR + D+            
Sbjct: 311 GNVRIGKQVHAYILRT-EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 369

Query: 169 ---------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
                                +N++DVV W +MIVGY  +G   +A+ LF  M     +P
Sbjct: 370 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 429

Query: 208 SDITFIGLLSACAHAGLVNEGRR-------------------------------FFNTMK 236
           +  T   +LS CA    ++ G++                               +   M 
Sbjct: 430 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF 489

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNI 293
           D+     +   +  M+  L++ GQ EEA  L  +M    +EPD + +  +L AC   G +
Sbjct: 490 DQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFV 549

Query: 294 ALGEK 298
             G++
Sbjct: 550 NEGKR 554



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 150/314 (47%), Gaps = 43/314 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR----GGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQG 55
           VK  L    Y+  +L+  Y       G +  A +LF  +P  +R++ +  ++L+ +AK G
Sbjct: 53  VKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSG 112

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
            +A AR +F +M E+D V W VM+ G  + G   EA+     M A+   P + T   VLS
Sbjct: 113 RLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLS 172

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------- 168
           +C    A   GR +HS++     +   V V  +++NMY KCG  + A  VF+R       
Sbjct: 173 SCAVTQAGAVGRKVHSFVVK-LGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVS 231

Query: 169 ------------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RI 203
                                   + D+ +V WN+MI GY  +G    AL+LF+ M    
Sbjct: 232 SWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 291

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
            + P + T   +LSACA+ G V  G++     ++ E A   +V +   +++  +++G VE
Sbjct: 292 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVE 349

Query: 263 EAYKLVMDMKIEPD 276
            A + +MD  +E D
Sbjct: 350 NARR-IMDQSMETD 362


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/437 (46%), Positives = 291/437 (66%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++++ Y+K   V  A  +F ++  K +V WN MI GYAQ+G  NEAL  F  M +  +
Sbjct: 270 MNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNI 329

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+V+ A  ++      +WIH  +   R +  NV V TAL++MY+KCG++  AR
Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIR-RFLDKNVFVMTALVDMYAKCGAIHTAR 388

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD +N + V+ WN+MI GY  HG GK +++LF EM +  +KP+DITF+  LSAC+H+G
Sbjct: 389 KLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSG 448

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG  FF +MK +Y IEP ++HYG MV+LL RAG++ +A+  +  M I+P   ++G +
Sbjct: 449 LVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAM 508

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N+ LGEK A  +   N  + G +VLL+NIYA    W  VA+VRT+M++ G+Q
Sbjct: 509 LGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQ 568

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PGCS +E+ N+VH F +G   HP+SK+IY  LE +   ++A GYVP T  + HD+ + 
Sbjct: 569 KTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDD 627

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K   L  HSEKLA+AFGL++T  GT I I KNLRVC DCH   K IS  TGR+I++RD 
Sbjct: 628 VKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDM 687

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFH F +G CSCGDYW
Sbjct: 688 HRFHLFKDGVCSCGDYW 704



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 138/233 (59%), Gaps = 2/233 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +L ++T ++  YAK  ++  A  +FD M E+D+VCWN MI GYAQ+G A  AL+L  RM 
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMS 123

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E   P+ +T V++L A      L  G  +H Y+  +   +  V V TAL++MYSKCGS+
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRA-GFESLVNVSTALVDMYSKCGSV 182

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             AR++FD ++ + VV WNSMI GY   G  + A+ +F +M    ++P+++T +G L AC
Sbjct: 183 SIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHAC 242

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           A  G +  G +F + + D+  ++  V     ++++ S+  +V+ A  +  +++
Sbjct: 243 ADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR 294



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 141/253 (55%), Gaps = 4/253 (1%)

Query: 40  SLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV+++T L   Y+K G V+ ARV+FD M+ + VV WN MIDGY Q G A  A+++F++M
Sbjct: 164 SLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKM 223

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L E V+P  VT +  L AC  +G LE G+++H  ++  + +  +V V  +LI+MYSKC  
Sbjct: 224 LDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLK-LDSDVSVMNSLISMYSKCKR 282

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  A  +F  + +K +V WN+MI+GYA +G   +AL  F EM    +KP   T + ++ A
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            A   +  + +     +   + ++  V     +V++ ++ G +  A KL  DM      +
Sbjct: 343 LAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKL-FDMMNARHVI 400

Query: 279 LWGTLLGACRLHG 291
            W  ++     HG
Sbjct: 401 TWNAMIDGYGTHG 413



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 8/235 (3%)

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           M+ GYA+    + AL  F RM  + V P       +L  CG    L+ G+ IH  +  S 
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS- 59

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
               N+   T ++NMY+KC  + DA  +FDR+ ++D+V WN+MI GYA +GF K AL L 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
             M     +P  IT + +L A A   L+  G      +      E  V     +V++ S+
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVL-RAGFESLVNVSTALVDMYSK 178

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            G V  A +++ D       V W ++     + G +  G+     LI Q + + G
Sbjct: 179 CGSVSIA-RVIFDGMDHRTVVSWNSM-----IDGYVQSGDAEGAMLIFQKMLDEG 227



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
            +++  +T ++  YAK G +  AR LFD M  + V+ WN MIDGY  HGL   ++ LF+ 
Sbjct: 365 DKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKE 424

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M    ++PN++T +  LSAC   G +E G      ++    I+  +    A++++  + G
Sbjct: 425 MKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAG 484

Query: 158 SLKDARLVFDRVNDKD-VVVWNSMIVGYAMH---GFG-KDALQLFNEMCRIRLKPSDITF 212
            L  A     ++  K  + V+ +M+    +H     G K A ++F      +L P D  +
Sbjct: 485 RLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIF------KLNPDDGGY 538

Query: 213 IGLLS 217
             LL+
Sbjct: 539 HVLLA 543


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/437 (47%), Positives = 291/437 (66%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++T Y+K   V  A  +FD+++ +  V WN MI G AQ+G + +A+ LF RM  E V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+V+ A   I      RWIH Y     ++  +V V TALI+MY+KCG +  AR
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGY-SIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++F+   ++ V+ WN+MI GY  HGFGK A++LF EM  I + P++ TF+ +LSAC+HAG
Sbjct: 419 ILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EGR +F +MK++Y +EP +EHYG MV+LL RAG+++EA+  +  M ++P   ++G +
Sbjct: 479 LVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC+LH N+ L E+ A+ +          +VLL+NIYA    W  VARVRT M++ G+Q
Sbjct: 539 LGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQ 598

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S I+L N++H F +G   H ++KEIY  L ++   +KA GYVP T  + HD+ + 
Sbjct: 599 KTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDD 657

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K   L  HSEKLA+AFGLI T PGT+I+I KNLRVC DCH   KLIS  TGR+I+MRD 
Sbjct: 658 VKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDI 717

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 718 QRFHHFKDGKCSCGDYW 734



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 8/287 (2%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFD 65
           L   TSL+ L A  GD+ +   + A +  R +    ++ T +   YAK    A AR +FD
Sbjct: 59  LRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFD 118

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALE 124
            M  +D V WN ++ GYA++GLA  A+ +  RM  E+ E P+ +T V+VL AC    AL 
Sbjct: 119 RMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALA 178

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           + R  H++   S  ++  V V TA+++ Y KCG ++ AR+VFD +  K+ V WN+MI GY
Sbjct: 179 ACREAHAFAIRS-GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGY 237

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A +G  ++AL LFN M    +  +D++ +  L AC   G ++EG R    +     ++  
Sbjct: 238 AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLV-RIGLDSN 296

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           V     ++ + S+  +V+ A   V D       V W  ++  C  +G
Sbjct: 297 VSVMNALITMYSKCKRVDLASH-VFDELDRRTQVSWNAMILGCAQNG 342



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL  F  M +    P   T  ++L  C   G L +GR +H+ +  +R I       TAL 
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLA-ARGIDSEALAATALA 101

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD 209
           NMY+KC    DAR VFDR+  +D V WN+++ GYA +G  + A+++   M      +P  
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 210 ITFIGLL 216
           IT + +L
Sbjct: 162 ITLVSVL 168



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD+D+YV T+L+D+YA+ G V  A  LF +  +R +++   M+  Y         
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY--------- 439

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG    A+ LF  M +  + PNE T ++VLSAC   
Sbjct: 440 ----------------------GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G ++ GR   + ++    ++  ++    ++++  + G L +A     ++  D  + V+ +
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537

Query: 180 MIVGYAMH 187
           M+    +H
Sbjct: 538 MLGACKLH 545


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/471 (43%), Positives = 301/471 (63%), Gaps = 1/471 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L VS +L+ LY +   V  A K+F  MP R++++   +L+ Y   G +  A+  F++M  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           K+++   VMI G AQ+G  +E L LF++M  +  EP +      L+AC  +GALE+GR +
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H+ + +    + ++ VG A+I+MY+KCG ++ A  VF  +   D+V WNSMI     HG 
Sbjct: 448 HAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGH 506

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           G  A++LF++M +  + P  ITF+ +L+AC+HAGLV +GR +FN+M + Y I P  +HY 
Sbjct: 507 GVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA 566

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            MV+L  RAG    A  ++  M  +P + +W  LL  CR+HGN+ LG + AE L      
Sbjct: 567 RMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQ 626

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           N GTYVLLSNIYA +G W+ VA+VR LM+++ V+KEP CS IE+ NKVH F+  D  HP+
Sbjct: 627 NDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPE 686

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
              +Y  LE++   +K  GY+P T+ VLHD+  +QK+++L  HSEKLAV FG++   P  
Sbjct: 687 VLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDA 746

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++++ KN+R+C DCH  FK +SK   R+I++RDR RFHHF NG CSC DYW
Sbjct: 747 TVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 147/301 (48%), Gaps = 36/301 (11%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           ++SA KLF  MP+R  ++ TTM+T Y +  ++  AR +F+ M E     WN MI GY   
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI---ENSRNIKVN 142
           G   EAL L R+M    ++ +++T   ++SAC  +G+ + G+ +H+YI   E + N    
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFC 327

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY------------------ 184
           + V  ALI +Y K   + +AR +F  +  ++++ WN+++ GY                  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 185 -------------AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
                        A +GFG + L+LF +M     +P D  F G L+AC+  G +  GR+ 
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +      E  +     M+++ ++ G VE A  + + M    D V W +++ A   HG
Sbjct: 448 HAQLV-HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHG 505

Query: 292 N 292
           +
Sbjct: 506 H 506



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 54/342 (15%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD--DMEEKDVV 73
           L+++Y +  +V+ A +LF  +P    ++ TT++T Y   G +   R +F+   +  +D V
Sbjct: 54  LLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSV 113

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA----------CGQ---- 119
            +N MI GYA +G  + AL LFR M  +   P++ T  +VLSA          CGQ    
Sbjct: 114 FYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCA 173

Query: 120 -----IGALESG---RWIHSYIENSRNIKVNVQ------------------VGTALINMY 153
                +G + S      +  Y++ +  + +                       T +I  Y
Sbjct: 174 VVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGY 233

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
            +   L  AR VF+ + +     WN+MI GY   G  ++AL L  +M  + ++  DIT+ 
Sbjct: 234 VRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYT 293

Query: 214 GLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGC------MVNLLSRAGQVEEAYK 266
            ++SACA+ G    G++     +K+E  + P   H  C      ++ L  +  +V+EA K
Sbjct: 294 TIISACANVGSFQMGKQMHAYILKNE--LNPN--HSFCLSVSNALITLYCKNNKVDEARK 349

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           +   M +  + + W  +L      G +   +   E +  +NL
Sbjct: 350 IFYAMPVR-NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 41/242 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V    +  L V  +++ +YA+ G V +AE +F TMP   LVS  +M+    + G      
Sbjct: 452 VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG------ 505

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG+  +A+ LF +ML E V P+ +T + VL+AC   G
Sbjct: 506 -----------------------HGV--KAIELFDQMLKEGVFPDRITFLTVLTACSHAG 540

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-VVVWNSM 180
            +E GR   + +  S  I         +++++ + G    AR+V D +  K    VW ++
Sbjct: 541 LVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEAL 600

Query: 181 IVGYAMHG---FGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           + G  +HG    G +A  QLF  M +     +D T++ L +  A  G  N+  +    M+
Sbjct: 601 LAGCRIHGNMDLGIEAAEQLFKLMPQ-----NDGTYVLLSNIYADVGRWNDVAKVRKLMR 655

Query: 237 DE 238
           D+
Sbjct: 656 DQ 657


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/472 (44%), Positives = 301/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSL--VSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V+ +L+  YA+ G V +A ++     +  L  +S T +L  Y K G++ +AR +F  M  
Sbjct: 228 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 287

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+G  +EA+ LFR M+    EPN  T  AVLS C  +  L+ G+ I
Sbjct: 288 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 347

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S  ++ +  V  A+I MY++ GS   AR +FD+V   K+ + W SMIV  A HG
Sbjct: 348 HCRAIRSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 406

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G++A+ LF EM R  ++P  IT++G+LSAC+HAG VNEG+R+++ +K+E+ I P++ HY
Sbjct: 407 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 466

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+RAG   EA + +  M +EPD++ WG+LL ACR+H N  L E  AE L+S + 
Sbjct: 467 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDP 526

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  ++N+Y+A G W   AR+    KEK V+KE G S   + +K+H F A D+ HP
Sbjct: 527 NNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHP 586

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   +Y M   +   +K  G+VP  Q VLHD+ ++ K+  L  HSEKLA+AFGLIST   
Sbjct: 587 QRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 646

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++++KNLRVC DCHA  K ISK T R+I++RD  RFHHF +G CSC DYW
Sbjct: 647 TTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 171/365 (46%), Gaps = 69/365 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   + V+ S++++Y + GD  +A  +F  MP RS+ S   M++     G +  A 
Sbjct: 85  VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 144

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            LF+ M ++ +V WN MI GY Q+GL  +AL LF RML E  + P+E T  +VLSAC  +
Sbjct: 145 SLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANL 204

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------ 168
           G +  G+ +H+YI  +  +  N QV  ALI+ Y+K GS+++AR + D+            
Sbjct: 205 GNVRIGKQVHAYILRT-EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 263

Query: 169 ---------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
                                +N++DVV W +MIVGY  +G   +A+ LF  M     +P
Sbjct: 264 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 323

Query: 208 SDITFIGLLSACAHAGLVNEGRR-------------------------------FFNTMK 236
           +  T   +LS CA    ++ G++                               +   M 
Sbjct: 324 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF 383

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNI 293
           D+     +   +  M+  L++ GQ EEA  L  +M    +EPD + +  +L AC   G +
Sbjct: 384 DQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFV 443

Query: 294 ALGEK 298
             G++
Sbjct: 444 NEGKR 448



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 124/259 (47%), Gaps = 37/259 (14%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           +AK G +A AR +F +M E+D V W VM+ G  + G   EA+     M A+   P + T 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-- 168
             VLS+C    A   GR +HS++     +   V V  +++NMY KCG  + A  VF+R  
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVK-LGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 169 -----------------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
                                        + D+ +V WN+MI GY  +G    AL+LF+ 
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 200 MC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSR 257
           M     + P + T   +LSACA+ G V  G++     ++ E A   +V +   +++  ++
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAK 238

Query: 258 AGQVEEAYKLVMDMKIEPD 276
           +G VE A + +MD  +E D
Sbjct: 239 SGSVENARR-IMDQSMETD 256



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           M++K G L DAR VF  + ++D V W  M+VG    G   +A++   +M      P+  T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 212 FIGLLSACA--HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
              +LS+CA   AG V  GR+  ++   +  +   V     ++N+  + G  E A  +  
Sbjct: 61  LTNVLSSCAVTQAGAV--GRK-VHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 117

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            M +   S  W  ++      G + L E + E +  +++
Sbjct: 118 RMPVRSVSS-WNAMVSLNTHLGRMDLAESLFESMPDRSI 155


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/437 (48%), Positives = 289/437 (66%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT+L  YAK GE+ +A  +FD+M ++D+  WN +I G+AQ     EAL LF+RM  +  +
Sbjct: 144 TTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFK 203

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE++ +  LSAC Q+G  + G  IH YI+  R   +N QV   +I+MY+KCG +  A L
Sbjct: 204 PNEISVLGALSACAQLGDFKEGEKIHGYIKVER-FDMNAQVCNVVIDMYAKCGFVDKAYL 262

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           VF+ ++  KD+V WN+MI+ +AMHG G  AL+LF +M +  + P D++++ +L AC H G
Sbjct: 263 VFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGG 322

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG R FN+M++   ++P V+HYG +V+LL RAG++ EAY +V  M   PD VLW TL
Sbjct: 323 LVEEGFRLFNSMEN-CGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTL 381

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGA R H N+ + E ++  L+     + G +VLLSN+YAA   W  V RVR  MK + V+
Sbjct: 382 LGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVK 441

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S IE +  +H+F   D  H   +EIY  L+EI   +K  GYV +T  VLHDIGE+
Sbjct: 442 KVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEE 501

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+N L  HSEKLAVAFGLIST  GT I+++KNLR+C DCH V KLISK   R+I++RDR
Sbjct: 502 DKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDR 561

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFH F  G CSC DYW
Sbjct: 562 VRFHRFKEGFCSCRDYW 578



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 5/263 (1%)

Query: 32  LFATMPQRSLVS--LTTMLTCYA-KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           LF T   R  +S   + +L  YA   G ++ A + F  +       WN +I G+ Q    
Sbjct: 27  LFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNP 86

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
             A   ++ M+++  + + +T   VL AC ++ A      IH++I   +    +  +GT 
Sbjct: 87  TNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVR-KGFIADALLGTT 145

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+++Y+K G +  A  VFD +  +D+  WN++I G+A      +AL LF  M     KP+
Sbjct: 146 LLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPN 205

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +I+ +G LSACA  G   EG +    +K E   +   +    ++++ ++ G V++AY + 
Sbjct: 206 EISVLGALSACAQLGDFKEGEKIHGYIKVE-RFDMNAQVCNVVIDMYAKCGFVDKAYLVF 264

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
             M    D V W T++ A  +HG
Sbjct: 265 ESMSCRKDIVTWNTMIMAFAMHG 287



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 40/187 (21%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAAARVLF 64
            D +  V   ++D+YA+ G V  A  +F +M  ++ +V+  TM+  +A  GE        
Sbjct: 237 FDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGE-------- 288

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
                                    +AL LF +M    V P++V+ +AVL AC   G +E
Sbjct: 289 -----------------------GCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVE 325

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVVWNSM 180
            G  + + +EN   +K NV+   +++++  + G L +A   +D VN      D+V+W ++
Sbjct: 326 EGFRLFNSMENC-GVKPNVKHYGSVVDLLGRAGRLHEA---YDIVNSMPTVPDIVLWQTL 381

Query: 181 IVGYAMH 187
           +     H
Sbjct: 382 LGASRTH 388


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/469 (44%), Positives = 297/469 (63%), Gaps = 15/469 (3%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG-- 81
           G V  A +LF  MP + +V+ T M+     +G +  AR +FD+M +++VV W  MI G  
Sbjct: 101 GRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEK 160

Query: 82  -----------YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                      Y + G   EAL LF  M  E V P+  + ++VLS CG + +L+ GR +H
Sbjct: 161 DDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVH 220

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
           S +  S+   +++ V + LI MY KCG L  A+ VFDR + KD+V+WNS+I GYA HGFG
Sbjct: 221 SQLVRSQ-FDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFG 279

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           + AL++F++M    + P +ITFIG+LSAC++ G V EG   F +MK +Y ++PK EHY C
Sbjct: 280 EKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYAC 339

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           MV+LL RAG++ EA  L+ +M +E D+++WG LLGACR H N+ L E  A+ L+     N
Sbjct: 340 MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNN 399

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL-AGDLRHPK 369
           +G Y+LLSN+Y++   W  V  +R  M+ K ++K PGCS IE+  KVH F   G   HP+
Sbjct: 400 AGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPE 459

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
            + I   L ++   L+  GY P    V+HD+ E++K +SL  HSEKLAVA+GL+    G 
Sbjct: 460 HEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGM 519

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
            I+++KNLRVC D H+  KLI++ TGR+I++RD NRFHHF +G CSC D
Sbjct: 520 PIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 29/287 (10%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A KLF  MP+ + +S   +++ Y + G ++ AR +FD M E++VV W  MI GY Q GL 
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EA +LF RM     E N V+   +L    + G ++  R +   +        +V   T 
Sbjct: 73  EEAELLFWRM----PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK-----DVVASTN 123

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG-------------YAMHGFGKDALQ 195
           +I+     G L +AR +FD +  ++VV W SMI G             Y   GF  +AL 
Sbjct: 124 MIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALA 183

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNL 254
           LF+ M R  ++PS  + I +LS C     ++ GR+  + + + ++ I+  V     ++ +
Sbjct: 184 LFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS--SVLITM 241

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             + G +  A K V D     D V+W +++     HG    GEK  E
Sbjct: 242 YIKCGDLVTA-KRVFDRFSSKDIVMWNSIIAGYAQHG---FGEKALE 284



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D D+YVS+ L+ +Y + GD+++A+++F     + +V   +++  Y          
Sbjct: 224 VRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGY---------- 273

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                AQHG   +AL +F  M +  + P+E+T + VLSAC   G
Sbjct: 274 ---------------------AQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTG 312

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G  I   +++   +    +    ++++  + G L +A  L+ +   + D +VW ++
Sbjct: 313 KVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 372

Query: 181 IVGYAMH 187
           +     H
Sbjct: 373 LGACRTH 379



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 20/194 (10%)

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           ++AR +FD++ + + + WN ++ GY  +G   +A ++F++M    +    +++  ++   
Sbjct: 11  REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGY 66

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
              GL+ E    F  M      E  V  +  M+  L   G+V+EA +L  DM    D V 
Sbjct: 67  VQEGLIEEAELLFWRMP-----ERNVVSWTVMLGGLIEDGRVDEARQL-FDMMPVKDVVA 120

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLA----------NSGTYVLLSNIYAAIGNWDG 329
              ++      G +    +I + +  +N+           + GT+  +  IY   G    
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELE 180

Query: 330 VARVRTLMKEKGVQ 343
              + +LM+ +GV+
Sbjct: 181 ALALFSLMQREGVR 194


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/480 (43%), Positives = 305/480 (63%), Gaps = 1/480 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K S + D++V  S++  Y+  G +  A  +F    +  +VS  +M+    + G +  A
Sbjct: 118 VIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEA 177

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             LF  M E++ + WN+MI GYAQ+G   EAL LFR M     EPN    V+VLSAC Q+
Sbjct: 178 LSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQL 237

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ G W+H YI   + ++V+  +  ALI+MY+KCGS+  A   F     +DV  + + 
Sbjct: 238 GALDHGCWVHCYI-GKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAA 296

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G AM+G  ++ALQLF +M    + P  +++I +L AC+HAG V +G  +F +M D + 
Sbjct: 297 ISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHG 356

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P+++HY CMV+LL RAG +EEA K V  M I+PD+V+WG LLGACR++GN  +G+++ 
Sbjct: 357 IRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVG 416

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             L+  +  + G Y+LLSNIYA     +   +VR  M+ + V + PGCS IE++  VHEF
Sbjct: 417 SLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEF 476

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
            +GD  H K++EIY+M EEI   +K  GY  +T+ V+ D+ E++K+  +  HSEKLAVAF
Sbjct: 477 FSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAF 536

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G + T+ G++++IVKN+R+C DCH   KL+SK   RKI +RDR  FHHF  G CSC DYW
Sbjct: 537 GFLYTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 119/293 (40%), Gaps = 70/293 (23%)

Query: 72  VVCWNVMIDGYAQ---HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           V  +N  I G+++    G    +++LF RM    + PN  T   +   C    A + GR 
Sbjct: 54  VFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQ 113

Query: 129 IHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS-------- 179
            H   I+NS   +++V V  ++I  YS CG L DAR VFD  ++ DVV WNS        
Sbjct: 114 FHGMVIKNS--FEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRN 171

Query: 180 -----------------------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
                                  MI GYA +G  K+AL LF EM  +  +P+    + +L
Sbjct: 172 GNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVL 231

Query: 217 SACAHAGLVNEG---------------RRFFNTMKDEYAI---------------EPKVE 246
           SAC+  G ++ G                     + D YA                +  V 
Sbjct: 232 SACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVS 291

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG 296
            Y   ++ L+  G  EEA +L   MK   I PD V +  +L AC   G +  G
Sbjct: 292 AYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKG 344


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/468 (42%), Positives = 308/468 (65%), Gaps = 10/468 (2%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
           + GD+L   ++   +     +S    +TT++  Y+       A  +FD++ ++D V WNV
Sbjct: 125 KSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNV 184

Query: 78  MIDGYAQHGLANEALVLFRRM---LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +I  Y ++    + LVLF +M   +   V+P+ VT +  L AC  +GAL+ G+ +H +I+
Sbjct: 185 LISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFID 244

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            +  +   + +   L++MYS+CGS+  A  VF+R+ +++VV W +MI G AM+GFGK+A+
Sbjct: 245 EN-GLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAI 303

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD-EYAIEPKVEHYGCMVN 253
           + FNEM +  + P + T  GLLSAC+H+GLV+EG  FF+ M+  E+ I+P + HYGC+V+
Sbjct: 304 EAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVD 363

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RA  +++AY L+  M+++PDS +W TLLGACR+HGN+ LGE++  +LI      +G 
Sbjct: 364 LLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGD 423

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YVLL N Y+++G W+ V  +R+LMK+K +Q  PGCS+IEL   VHEF+  D+ HP+ +EI
Sbjct: 424 YVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEI 483

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           Y ML EIN  LK  GYV +    LH++  E++K  +L  HSEKLA+AFG++ T P T+I+
Sbjct: 484 YKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIR 543

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + KNLR C DCH   K +S    R +++RDR+RFHHF  G+CSC D+W
Sbjct: 544 VTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/437 (47%), Positives = 291/437 (66%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++T Y+K   V  A  +FD+++ +  V WN MI G AQ+G + +A+ LF RM  E V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+V+ A   I      RWIH Y     ++  +V V TALI+MY+KCG +  AR
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGY-SIRLHLDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++F+   ++ V+ WN+MI GY  HGFGK A++LF EM  I + P++ TF+ +LSAC+HAG
Sbjct: 419 ILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EGR +F +MK++Y +EP +EHYG MV+LL RAG+++EA+  +  M ++P   ++G +
Sbjct: 479 LVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAM 538

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC+LH N+ L E+ A+ +          +VLL+NIYA    W  VARVRT M++ G+Q
Sbjct: 539 LGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQ 598

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S I+L N++H F +G   H ++KEIY  L ++   +KA GYVP T  + HD+ + 
Sbjct: 599 KTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDD 657

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K   L  HSEKLA+AFGLI T PGT+I+I KNLRVC DCH   KLIS  TGR+I+MRD 
Sbjct: 658 VKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDI 717

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 718 QRFHHFKDGKCSCGDYW 734



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 8/287 (2%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFD 65
           L   TSL+ L A  GD+ +   + A +  R +    ++ T +   YAK    A AR +FD
Sbjct: 59  LRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFD 118

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALE 124
            M  +D V WN ++ GYA++GLA  A+ +  RM  E+ E P+ +T V+VL AC    AL 
Sbjct: 119 RMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALA 178

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           + R  H++   S  ++  V V TA+++ Y KCG ++ AR+VFD +  K+ V WN+MI GY
Sbjct: 179 ACREAHAFAIRS-GLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGY 237

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A +G  ++AL LFN M    +  +D++ +  L AC   G ++EG R    +     ++  
Sbjct: 238 AQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLV-RIGLDSN 296

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           V     ++ + S+  +V+ A   V D       V W  ++  C  +G
Sbjct: 297 VSVMNALITMYSKCKRVDLASH-VFDELDRRTQVSWNAMILGCAQNG 342



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL  F  M +    P   T  ++L  C   G L +GR +H+ +  +R I       TAL 
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLA-ARGIDSEALAATALA 101

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD 209
           NMY+KC    DAR VFDR+  +D V WN+++ GYA +G  + A+++   M      +P  
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 210 ITFIGLL 216
           IT + +L
Sbjct: 162 ITLVSVL 168



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD+D+YV T+L+D+YA+ G V  A  LF +  +R +++   M+  Y         
Sbjct: 389 SIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY--------- 439

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG    A+ LF  M +  + PNE T ++VLSAC   
Sbjct: 440 ----------------------GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G ++ GR   + ++    ++  ++    ++++  + G L +A     ++  D  + V+ +
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537

Query: 180 MIVGYAMH 187
           M+    +H
Sbjct: 538 MLGACKLH 545


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/472 (44%), Positives = 301/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSL--VSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V+ +L+  YA+ G V +A ++     +  L  +S T +L  Y K G++ +AR +F  M  
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+G  +EA+ LFR M+    EPN  T  AVLS C  +  L+ G+ I
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S  ++ +  V  A+I MY++ GS   AR +FD+V   K+ + W SMIV  A HG
Sbjct: 454 HCRAIRSL-LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G++A+ LF EM R  ++P  IT++G+LSAC+HAG VNEG+R+++ +K+E+ I P++ HY
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHY 572

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+RAG   EA + +  M +EPD++ WG+LL ACR+H N  L E  AE L+S + 
Sbjct: 573 ACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDP 632

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  ++N+Y+A G W   AR+    KEK V+KE G S   + +K+H F A D+ HP
Sbjct: 633 NNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHP 692

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   +Y M   +   +K  G+VP  Q VLHD+ ++ K+  L  HSEKLA+AFGLIST   
Sbjct: 693 QRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 752

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++++KNLRVC DCHA  K ISK T R+I++RD  RFHHF +G CSC DYW
Sbjct: 753 TTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 170/365 (46%), Gaps = 69/365 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   + V+ S++++Y + GD  +A  +F  MP RS+ S   M++     G +  A 
Sbjct: 191 VKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 250

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            LF+ M  + +V WN MI GY Q+GL  +AL LF RML E  + P+E T  +VLSAC  +
Sbjct: 251 SLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANL 310

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------ 168
           G +  G+ +H+YI  +  +  N QV  ALI+ Y+K GS+++AR + D+            
Sbjct: 311 GNVRIGKQVHAYILRT-EMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 369

Query: 169 ---------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
                                +N++DVV W +MIVGY  +G   +A+ LF  M     +P
Sbjct: 370 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 429

Query: 208 SDITFIGLLSACAHAGLVNEGRR-------------------------------FFNTMK 236
           +  T   +LS CA    ++ G++                               +   M 
Sbjct: 430 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMF 489

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNI 293
           D+     +   +  M+  L++ GQ EEA  L  +M    +EPD + +  +L AC   G +
Sbjct: 490 DQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFV 549

Query: 294 ALGEK 298
             G++
Sbjct: 550 NEGKR 554



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 43/314 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR----GGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQG 55
           VK  L    Y+  +L+  Y       G +  A +LF  +P  +R++ +  ++L+ +AK G
Sbjct: 53  VKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSG 112

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
            +A AR +F +M E+D V W VM+ G  + G   EA+     M A+   P + T   VLS
Sbjct: 113 RLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLS 172

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------- 168
           +C    A   GR +HS++     +   V V  +++NMY KCG  + A  VF+R       
Sbjct: 173 SCAVTQAGAVGRKVHSFVVK-LGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVS 231

Query: 169 ------------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RI 203
                                   +  + +V WN+MI GY  +G    AL+LF+ M    
Sbjct: 232 SWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES 291

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
            + P + T   +LSACA+ G V  G++     ++ E A   +V +   +++  +++G VE
Sbjct: 292 SMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVE 349

Query: 263 EAYKLVMDMKIEPD 276
            A + +MD  +E D
Sbjct: 350 NARR-IMDQSMETD 362


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/479 (45%), Positives = 306/479 (63%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAAR 61
           L  D +V   ++   AR GD+ S   +   M +    R++   T+++  Y K G +  AR
Sbjct: 201 LRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEAR 260

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M EKD+VCW+ MI GYA +GL  EA+ LF  M    V P+    V  LS+C  +G
Sbjct: 261 FVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLG 320

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G W    + N      N  +GT+LI+ Y+KCGS+++A  V+  + +KD VV+N++I
Sbjct: 321 ALELGNWAKGLM-NYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVI 379

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G AM+G    A  +F +M +  + P++ TF+GLL  C HAGLV++GR +FN+M  ++++
Sbjct: 380 SGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSV 439

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P +EHYGCMV+LL+RAG ++EA+ L+  M ++ + ++WG+LLG CRLH    L E + +
Sbjct: 440 TPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLK 499

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI     NSG YVLLSNIY+A   WD   ++R+ + EKG+QK PG S +E+   VHEFL
Sbjct: 500 QLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFL 559

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP S++IY  LE +   LK  GY P T+ VL D+ E++K++ L  HSEKLAVAF 
Sbjct: 560 VGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSEKLAVAFA 619

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIST     I++VKNLRVC DCH   K ISK TGR+I++RD NRFH F +G CSC DYW
Sbjct: 620 LISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGACSCRDYW 678



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 145/251 (57%), Gaps = 5/251 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K G +  A  +FDDM  K+VV W  MI G  + G   EA+ LFR +L   + 
Sbjct: 143 TNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLR 202

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+    V VL AC ++G LESGRWI   +     +  NV V T+L++MY+KCGS+++AR 
Sbjct: 203 PDGFVIVRVLRACARLGDLESGRWIDRCMREC-GLSRNVFVATSLVDMYTKCGSMEEARF 261

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + +KD+V W++MI GYA +G  ++A++LF EM ++ ++P     +G LS+CA  G 
Sbjct: 262 VFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGA 321

Query: 225 VNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  G      M  +E+   P +     +++  ++ G +EEA  +   MK E D V++  +
Sbjct: 322 LELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEEALGVYKMMK-EKDRVVFNAV 378

Query: 284 LGACRLHGNIA 294
           +    ++G + 
Sbjct: 379 ISGLAMYGQVG 389



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 3/210 (1%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N MI G       N A+ L+  M    + P+  T   VL AC ++     G  IHS + 
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVF 131

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            +     +V V T ++  YSKCG L+DA  VFD +  K+VV W  MI G    G  ++A+
Sbjct: 132 KT-GFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAV 190

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LF  +    L+P     + +L ACA  G +  GR     M+ E  +   V     +V++
Sbjct: 191 DLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMR-ECGLSRNVFVATSLVDM 249

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++ G +EEA + V D  +E D V W  ++
Sbjct: 250 YTKCGSMEEA-RFVFDGMVEKDIVCWSAMI 278



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 4/183 (2%)

Query: 164 LVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           LVF +   + +  ++N+MI G        +A+ L+  M +  + P   TF  +L ACA  
Sbjct: 58  LVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARL 117

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            L + G    +++  +   +  V     +V   S+ G + +A+K+  DM ++ + V W  
Sbjct: 118 NLFHLG-VMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVK-NVVSWTG 175

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVL-LSNIYAAIGNWDGVARVRTLMKEKG 341
           ++  C   G       +   L+   L   G  ++ +    A +G+ +    +   M+E G
Sbjct: 176 MICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECG 235

Query: 342 VQK 344
           + +
Sbjct: 236 LSR 238


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/442 (47%), Positives = 297/442 (67%), Gaps = 3/442 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +VS TTM+    K G    ARVLFD M E+++V WN M+ GY +     +AL +F  M A
Sbjct: 165 VVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRA 224

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V+ N   A   + AC   GAL  GR +H ++E S  I+++ ++ TA+++MY KCG ++
Sbjct: 225 RGVDGNVFVAATAVVACTGAGALARGREVHRWVEQS-GIQMDEKLATAVVDMYCKCGCVE 283

Query: 161 DARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +A  VF+ +    K +  WN MI G+A+HG G+DAL+LF  M R  + P D+T + +L+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CAHAG+++EGR +FN +   Y IEPK+EHYGCMV+L  RAG++EEA K++ DM +EPD  
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           + G L GA ++HG++ LGE I   +I  +  NSG YVLL+N+ A  G W+ VARVR LM 
Sbjct: 404 VLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           E+ V KE G S IE+  +V EF  G L HP+++E+Y M  ++   ++AEGYVP T+ VLH
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLH 523

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
            I E++K+  L  HSEKLA+AFGL+ T+PG +++I KNLRVC DCH   K +S+   R+I
Sbjct: 524 AIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQI 583

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDRNRFHHF +G CSC DYW
Sbjct: 584 VVRDRNRFHHFKDGQCSCKDYW 605


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/447 (46%), Positives = 301/447 (67%), Gaps = 1/447 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K     +LY+   +V LYA  G++  A  LF  MPQR +V+   M+    KQG+   A  
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF  M E++V  W  MI GY Q G A EA+ LF +M    V+ NEVT VAVL+AC  +GA
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G  IH Y  N    K NV++   LI+MY KCG L++A  VF+ + ++ VV W++MI 
Sbjct: 276 LDLGMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G AMHG  ++AL+LF++M ++ ++P+ +TFIGLL AC+H GL++EGRRFF +M  +Y I 
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P++EHYGCMV+LLSRAG + EA++ +++M ++P+ V+WG LLGACR+H N+ + E+  ++
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L+  +  N G YV+LSNIYA  G W+  ARVR  MK++ V+K PG SSI +   VHEF+A
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           G+  HP +++I+   EE+   ++ +GYVP T +VL DI E +K   +  HSEKLA+ FGL
Sbjct: 515 GEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGL 574

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKL 449
           ++T   T I+I+KNLR+C DCH+ F++
Sbjct: 575 MNTPAETPIRIMKNLRICEDCHSAFQI 601



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 140/294 (47%), Gaps = 36/294 (12%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK--DVVCWNVMIDGYAQHGLA 88
           ++  T    S++ LT +    A       A+ +F+ +E++  +   WN  +   A+    
Sbjct: 50  QIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSP 109

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            +A++LF R+    V P+  T  +VL AC  +  L +GR +H  +E     + N+ +   
Sbjct: 110 IDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKV-GFRSNLYLQNM 168

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWN------------------------------ 178
           ++++Y+ CG + +ARL+F+++  +DVV WN                              
Sbjct: 169 IVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSW 228

Query: 179 -SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            SMI GY   G  K+A+ LF +M    +K +++T + +L+ACA  G ++ G R  +   +
Sbjct: 229 TSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMR-IHEYSN 287

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  +  V     ++++  + G +EEA K+  +M+ E   V W  ++G   +HG
Sbjct: 288 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME-ERTVVSWSAMIGGLAMHG 340


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/459 (43%), Positives = 300/459 (65%), Gaps = 1/459 (0%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           + G +  A KLF  MP++  VS +T++  +AK G++  A  LFD M EK+VV W  M+DG
Sbjct: 262 KAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDG 321

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           ++++G + +AL +F +ML E V PN  T V+ LSAC +IG LE+G  IH YI+++  + +
Sbjct: 322 FSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDN-GLHL 380

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
              +GTAL++MY+KCG+++ A  VF     K +  W  MI G+A+HG  + A+  F +M 
Sbjct: 381 TEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMM 440

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              +KP ++ F+ LL+AC H+G V+ G  FF++M+ +Y IEP ++HY  +V++L R+GQ+
Sbjct: 441 FAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQL 500

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321
           +EA + +  M + PD V+WG L  ACR H    + +     L+     ++G Y+ LSN Y
Sbjct: 501 KEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAY 560

Query: 322 AAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEIN 381
           AA+G W+   RVR LM+ +GV K  G S IE+  +VH F++GD  H  SK I + LEEI 
Sbjct: 561 AALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIM 620

Query: 382 GWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCP 441
                +GY+P T+ VLH++ +++K++ L  H EKLA+AF LI T PG +I+IVKNL+VC 
Sbjct: 621 AGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCG 680

Query: 442 DCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           DCH++ K  SK + R+IM+RD  RFHHF +G+CSC D+W
Sbjct: 681 DCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 20/326 (6%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           + A+ +   +   SL++ T +++  + +  +  +  +F+  + K++  +N +I G   + 
Sbjct: 100 IHAQIIIHNLSSSSLIT-TQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNS 158

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
               A+  FR ML   ++P+ +T   VL +   + + E G  IH  I     I+++  V 
Sbjct: 159 HFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRC-GIELDSFVR 217

Query: 147 TALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
            +L++MY K   L  A  VFD   ++       ++WN +I G    G  K A++LF  M 
Sbjct: 218 VSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP 277

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
               K  ++++  L+   A  G ++     F+ M      E  V  +  MV+  SR G  
Sbjct: 278 ----KKENVSWSTLIDGFAKNGDMDRAMELFDQMP-----EKNVVSWTTMVDGFSRNGDS 328

Query: 262 EEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLL 317
           E+A  +   M    + P++    + L AC   G +  G +I +Y+    L         L
Sbjct: 329 EKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTAL 388

Query: 318 SNIYAAIGNWDGVARVRTLMKEKGVQ 343
            ++YA  GN +  + V    ++K ++
Sbjct: 389 VDMYAKCGNIESASEVFGETEQKSIR 414



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 39/234 (16%)

Query: 3   KFSLDKDLYVS----TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           K+  D  L+++    T+LVD+YA+ G++ SA ++F    Q+S+ +               
Sbjct: 371 KYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRT--------------- 415

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
                           W VMI G+A HG + +A+  F++M+   ++P+EV  +A+L+AC 
Sbjct: 416 ----------------WTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACM 459

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVW 177
             G ++ G      +     I+ +++  T +++M  + G LK+A    +R+  + D V+W
Sbjct: 460 HSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIW 519

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRR 230
            ++      H   K A    N++  ++L+P+    +I L +A A  G   +  R
Sbjct: 520 GALFCACRAHKKTKMAKFALNKL--LKLEPTHTGNYIFLSNAYAALGQWEDAER 571


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/443 (45%), Positives = 297/443 (67%), Gaps = 2/443 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R L  + +++T Y K G +  AR LF D+  +DVV W  M+ GYAQ G  +EA+ LFRRM
Sbjct: 282 RELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRM 341

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             + ++P+++T  +VL++C     L+ G+ IH  + ++    ++V + +AL++MY+KCGS
Sbjct: 342 QQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKCGS 400

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGY-AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           + DA LVF+++++++VV W ++I G  A HG  ++AL+ F++M +  +KP  +TF  +LS
Sbjct: 401 MDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLS 460

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC H GLV EGR+ F +M  +Y I+P VEHY C V+LL RAG +EEA  +++ M   P  
Sbjct: 461 ACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGP 520

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +WG LL ACR+H ++  GE+ AE ++  +  + G YV LS+IYAA G ++   +VR +M
Sbjct: 521 SVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVM 580

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           +++ V KEPG S IE+  KVH F   D  HP+S++IY+ L ++   +K  GYVP T+ VL
Sbjct: 581 EKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVL 640

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ E+QK+  L  HSE+LA+ +GL+ T PG  I+IVKNLRVC DCH   K ISK  GR+
Sbjct: 641 HDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGRE 700

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I+ RD  RFHHF +G CSCGD+W
Sbjct: 701 IIARDAQRFHHFADGVCSCGDFW 723



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 143/249 (57%), Gaps = 6/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK G+++ ARV+FD + EK+VV W ++I GYAQ G  + AL L   M   +V 
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN++T  ++L  C    ALE G+ +H YI  S      + V  +LI MY KCG L++AR 
Sbjct: 247 PNKITFASILQGCTTPAALEHGKKVHRYIIQS-GYGRELWVVNSLITMYCKCGGLEEARK 305

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +  +DVV W +M+ GYA  GF  +A+ LF  M +  +KP  +TF  +L++C+    
Sbjct: 306 LFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAF 365

Query: 225 VNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + EG+R    +    Y ++  ++    +V++ ++ G +++A  LV +   E + V W  +
Sbjct: 366 LQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDA-SLVFNQMSERNVVAWTAI 422

Query: 284 L-GACRLHG 291
           + G C  HG
Sbjct: 423 ITGCCAQHG 431



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 169/358 (47%), Gaps = 43/358 (12%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           +G +V +A       P R L +  T+L+ YAK G +  AR +FD + ++++V W  MI+ 
Sbjct: 65  QGREVHAAILKSGIQPNRYLEN--TLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEA 122

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           +       EA   +  M     +P++VT V++L+A      L+ G+ +H  I  +  +++
Sbjct: 123 FVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEA-GLEL 181

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
             +VGT+L+ MY+KCG +  AR++FDR+ +K+VV W  +I GYA  G    AL+L   M 
Sbjct: 182 EPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQ 241

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
           +  + P+ ITF  +L  C     +  G++     ++  Y  E  V     ++ +  + G 
Sbjct: 242 QAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV--VNSLITMYCKCGG 299

Query: 261 VEEAYKLVMDMK----------------------------------IEPDSVLWGTLLGA 286
           +EEA KL  D+                                   I+PD + + ++L +
Sbjct: 300 LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTS 359

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
           C     +  G++I + L+     N   Y+   L ++YA  G+ D  + V   M E+ V
Sbjct: 360 CSSPAFLQEGKRIHQQLVHAGY-NLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNV 416



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
           G   EAL +   M+ +           +L  C ++ +LE GR +H+ I  S  I+ N  +
Sbjct: 26  GRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKS-GIQPNRYL 84

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
              L++MY+KCGSL DAR VFD + D+++V W +MI  +       +A + +  M     
Sbjct: 85  ENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGC 144

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           KP  +TF+ LL+A  +  L+  G++     ++    +EP+V     +V + ++ G + +A
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISKA 202

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            +++ D   E + V W  L+      G + +  ++ E +    +A
Sbjct: 203 -RVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/472 (44%), Positives = 300/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V  +L+ +Y++ G V  A+K+   + +    +++ T +L  Y K G++  AR +FD +  
Sbjct: 315 VGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRV 374

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY Q+G   +A+ LFR M+ E  +PN  T   +LS    + +L+ GR I
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQI 434

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H+    S N   +V V  ALI MY+K GS+ DAR VF+ ++  +D + W SMI+  A HG
Sbjct: 435 HASATRSGNAS-SVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG 493

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G++AL LF  M    +KP  IT++G+LSAC H GLV +GR ++N M++ + I P   HY
Sbjct: 494 LGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHY 553

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CM++L  RAG ++EA+  + +M IEPD + WG+LL +C++H N+ L E  AE L+    
Sbjct: 554 ACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEP 613

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  L+N+Y+A G W+  A +R  MK+KGV+K+ G S +++ NKVH F   D  HP
Sbjct: 614 ENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHP 673

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   IY M+ +I   +K  G+VP T+ VLHD+ E+ K+  L  HSEKLA+AFGLI T   
Sbjct: 674 QRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPEN 733

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH+  K ISK  GR+I++RD  RFHHF NG CSC DYW
Sbjct: 734 TTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 184/375 (49%), Gaps = 45/375 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L   +++  +L++ YA+ G +  A ++F  MP +S+ S   +L+ YAK G +  A 
Sbjct: 40  IKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAH 99

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F++M E D V W  MI GY Q G    A+ +FR M+++ V P + T   VL++C  + 
Sbjct: 100 RVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVE 159

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN----------- 170
            L  GR +HS++     +   + V  +L+NMY+K G    A++VFDR+            
Sbjct: 160 CLGIGRKVHSFVVK-HGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMI 218

Query: 171 --------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSD 209
                               ++DVV WN+MI GY  HGF ++AL +F++M      KP  
Sbjct: 219 SSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDK 278

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG----CMVNLLSRAGQVEEAY 265
            T    LSACA+   +  G++        + I  + + +G     ++++ S++G VE A 
Sbjct: 279 FTLASALSACANLENLKLGKQI-----HAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQ 333

Query: 266 KLVMDMKIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           K++    I   D + +  LL      G+I    +I + L  +++  + T +++  +    
Sbjct: 334 KIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVV-AWTAMIVGYVQNGF 392

Query: 325 GNWDGVARVRTLMKE 339
            N D +   R+++KE
Sbjct: 393 -NQDAMELFRSMIKE 406


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/481 (43%), Positives = 313/481 (65%), Gaps = 9/481 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS-----LVSLTTMLTCYAKQGEVAAARV 62
            D+    SL    A+ GD L A+ +   + +R      +++   M+  YAK  ++ AA+ 
Sbjct: 267 PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK 326

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIG 121
           +FD++ ++DVV WN +I GY Q+GLANEA+ ++  M   E ++P + T V+VL A   +G
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLG 386

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ G  +H+ +     + ++V V T LI++Y+KCG L +A  +F+ +  +    WN++I
Sbjct: 387 GLQQGMRMHA-LSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAII 445

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G  +HG G  AL LF++M +  +KP  +TF+ LL+AC+HAGLV++GR FF+ M+  Y I
Sbjct: 446 AGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGI 505

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P  +HY CMV++L RAGQ++EA++ +  M I+PDS +WG LLGACR+HGN+ +G+  ++
Sbjct: 506 VPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQ 565

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L   +  N G YVL+SN+YA IG WDGV  VR+L++ + +QK PG SS+E+   V  F 
Sbjct: 566 NLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFY 625

Query: 362 AGDLR--HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           +G     HP+ +EI   L ++   +K+ GYVP    VL D+ E +K+  L  HSE+LA+A
Sbjct: 626 SGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIA 685

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+I+T PGT + I KNLRVC DCH+  K ISK T R+I++RD NRFHHF +G CSCGD+
Sbjct: 686 FGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDF 745

Query: 480 W 480
           W
Sbjct: 746 W 746



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 3/250 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y K G +  A  +F  M  +D+V WN +I    Q G    A+ LF  M+   V P
Sbjct: 208 ALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCP 267

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + +T V++ SA  Q G     + +H Y+        ++  G A+++MY+K   +  A+ V
Sbjct: 268 DVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKV 327

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGL 224
           FD + D+DVV WN++I GY  +G   +A++++N+M     LKP   TF+ +L A ++ G 
Sbjct: 328 FDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGG 387

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + +G R  + +  +  +   V    C+++L ++ G++ EA  L   M     +  W  ++
Sbjct: 388 LQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP-RRSTGPWNAII 445

Query: 285 GACRLHGNIA 294
               +HG+ A
Sbjct: 446 AGLGVHGHGA 455



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 8/301 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y + G VA A  +FD+M E+DV  WN M+ G  ++  A +A+ L  RM+ E V  
Sbjct: 107 SLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG 166

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT  +VL  C  +G       +H Y      +   + V  ALI++Y K G L +A  V
Sbjct: 167 DAVTLSSVLPMCVVLGDRALALVMHVYAVK-HGLSGELFVCNALIDVYGKLGMLTEAHWV 225

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D+V WNS+I      G    A++LF+ M    + P  +T + L SA A  G  
Sbjct: 226 FGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDE 285

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
              +     ++        +     MV++ ++  +++ A K V D   + D V W TL+ 
Sbjct: 286 LGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK-VFDNLPDRDVVSWNTLIT 344

Query: 286 ACRLHGNIALGEKIAEYLISQNLAN----SGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
               +G     E I  Y    N        GT+V +   Y+ +G      R+  L  + G
Sbjct: 345 GYMQNG--LANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTG 402

Query: 342 V 342
           +
Sbjct: 403 L 403



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 40/221 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K  L+ D+YV+T L+DLYA+ G ++ A  LF  MP+RS      ++      G  A A
Sbjct: 398 SIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKA 457

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             LF  M++                               E+++P+ VT V++L+AC   
Sbjct: 458 LSLFSQMQQ-------------------------------EEIKPDHVTFVSLLAACSHA 486

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
           G ++ GR     ++    I    +  T +++M  + G L +A      +  K D  VW +
Sbjct: 487 GLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGA 546

Query: 180 MIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +HG    GK A Q   E     L P ++ +  L+S
Sbjct: 547 LLGACRIHGNVEMGKVASQNLFE-----LDPENVGYYVLMS 582



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           NV    +L++ Y + G + +A  VFD + ++DV  WN+M+ G   +    DA+ L   M 
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV--EHYGC--MVNLLSR 257
              +    +T   +L  C     V  G R    +   YA++  +  E + C  ++++  +
Sbjct: 161 GEGVAGDAVTLSSVLPMC-----VVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGK 215

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVL 316
            G + EA+ +   M +  D V W +++ A    G +A   ++   ++   +  +  T V 
Sbjct: 216 LGMLTEAHWVFGGMALR-DLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVS 274

Query: 317 LSNIYAAIGNWDGVARVRTLMKEKG 341
           L++  A  G+  G   V   ++ +G
Sbjct: 275 LASAVAQCGDELGAKSVHCYVRRRG 299


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/442 (47%), Positives = 297/442 (67%), Gaps = 3/442 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +VS TTM+    K G    ARVLFD M E+++V WN M+ GY +     +AL +F  M A
Sbjct: 165 VVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRA 224

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V+ N   A   + AC   GAL  GR +H ++E S  I+++ ++ TA+++MY KCG ++
Sbjct: 225 RGVDGNVFVAATAVVACTGAGALARGREVHRWVEQS-GIQMDEKLATAVVDMYCKCGCVE 283

Query: 161 DARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +A  VF+ +    K +  WN MI G+A+HG G+DAL+LF  M R  + P D+T + +L+A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CAHAG+++EGR +FN +   Y IEPK+EHYGCMV+L  RAG++EEA K++ DM +EPD  
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           + G L GA ++HG++ LGE I   +I  +  NSG YVLL+N+ A  G W+ VARVR LM 
Sbjct: 404 VLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           E+ V KE G S IE+  +V EF  G L HP+++E+Y M  ++   ++AEGYVP T+ VLH
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVLH 523

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
            I E++K+  L  HSEKLA+AFGL+ T+PG +++I KNLRVC DCH   K +S+   R+I
Sbjct: 524 AIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQI 583

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDRNRFHHF +G CSC DYW
Sbjct: 584 VVRDRNRFHHFKDGQCSCKDYW 605


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/474 (42%), Positives = 301/474 (63%), Gaps = 32/474 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D D+++ +SL+D+YA+   V  + ++F  +PQ                            
Sbjct: 268 DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH--------------------------- 300

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
               D + WN +I G  Q+G+ +E L  F++ML  K++PN V+  +++ AC  +  L  G
Sbjct: 301 ----DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + +H YI  SR    NV + +AL++MY+KCG+++ AR +FD++   D+V W +MI+GYA+
Sbjct: 357 KQLHGYIIRSR-FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL 415

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG   DA+ LF  M    +KP+ + F+ +L+AC+HAGLV+E  ++FN+M  +Y I P +E
Sbjct: 416 HGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLE 475

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY  + +LL R G++EEAY+ + DM IEP   +W TLL ACR+H NI L EK+++ L + 
Sbjct: 476 HYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTV 535

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           +  N G YVLLSNIY+A G W    ++R  M++KG++K+P CS IE+ NKVH F+AGD  
Sbjct: 536 DPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKS 595

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP    I   L+ +   ++ EGYV  T  VLHD+ E+QK+  L  HSE+LA+ FG+IST 
Sbjct: 596 HPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTP 655

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            GT+I++ KNLRVC DCH   K ISK  GR+I++RD +RFHHF +G CSCGD+W
Sbjct: 656 AGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 152/299 (50%), Gaps = 21/299 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARG---GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           ++  +  DLY   +L+++Y++     +V + +K+F       + S     + Y     + 
Sbjct: 133 IRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY-----LG 187

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           + R +F+ M ++D+V WN +I G AQ+G+  +AL++ R M    + P+  T  +VL    
Sbjct: 188 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 247

Query: 119 QIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           +   L  G+ IH Y I N  +   +V +G++LI+MY+KC  + D+  VF  +   D + W
Sbjct: 248 EYVNLLKGKEIHGYAIRNGYD--ADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 305

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           NS+I G   +G   + L+ F +M   ++KP+ ++F  ++ ACAH   ++ G++       
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG---- 361

Query: 238 EYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
            Y I  + +        +V++ ++ G +  A  +   M++  D V W  ++    LHG+
Sbjct: 362 -YIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGH 418



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 147/369 (39%), Gaps = 77/369 (20%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV-VCWNVMIDGYAQH 85
           L A+ L  ++P  SL  L+T+L+ Y+    +  + ++F+ +      + W  +I  Y  H
Sbjct: 27  LHAQILRTSLPSPSL--LSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSH 84

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
           GL   +L  F +MLA    P+     +VL +C  +  L  G  +H  I     +  ++  
Sbjct: 85  GLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIR-LGMGFDLYT 143

Query: 146 GTALINMYSKCGSLKDA-----------------------------RLVFDRVNDKDVVV 176
             AL+NMYSK  SL++                              R VF+ +  +D+V 
Sbjct: 144 CNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVS 203

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT------------------------- 211
           WN++I G A +G  +DAL +  EM    L+P   T                         
Sbjct: 204 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAI 263

Query: 212 --------FIG--LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
                   FIG  L+   A    V++  R F  +     I       GC+ N     G  
Sbjct: 264 RNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN-----GMF 318

Query: 262 EEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLL 317
           +E  K    M   KI+P+ V + +++ AC     + LG+++  Y+I      N      L
Sbjct: 319 DEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASAL 378

Query: 318 SNIYAAIGN 326
            ++YA  GN
Sbjct: 379 VDMYAKCGN 387



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 115/240 (47%), Gaps = 37/240 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   D +++++++LVD+YA+ G++ +A  +F  M    +VS T M+  YA         
Sbjct: 364 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA--------- 414

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG A +A+ LF+RM  E V+PN V  +AVL+AC   G
Sbjct: 415 ----------------------LHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 452

Query: 122 AL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
            + E+ ++ +S  ++ R I   ++   A+ ++  + G L++A   + D   +    VW++
Sbjct: 453 LVDEAWKYFNSMTQDYRIIP-GLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWST 511

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGRRFFNTMKDE 238
           ++    +H   + A ++  ++    + P +I    LLS   + AG   + R+    M+D+
Sbjct: 512 LLAACRVHKNIELAEKVSKKL--FTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDK 569


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 315/510 (61%), Gaps = 41/510 (8%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE------------ 56
           ++++  +L D+YA+ G++  A  LF  + +++LVS   M++ YAK G+            
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248

Query: 57  -----------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
                                  V  AR +F + +EKD+VCW  M+ GYA++G   +AL+
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALIN 151
           LF  ML E +EP+  T  +V+S+C ++ +L  G+ +H  S +    N   N+ V +ALI+
Sbjct: 309 LFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN---NLLVSSALID 365

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MYSKCG + DAR VF+ +  ++VV WN+MIVG A +G  KDAL+LF  M + + KP ++T
Sbjct: 366 MYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVT 425

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           FIG+LSAC H   + +G+ +F+++ +++ + P ++HY CMVNLL R G++E+A  L+ +M
Sbjct: 426 FIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
             +PD ++W TLL  C   G+I   E  A +L   +   +  Y++LSN+YA++G W  VA
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVA 545

Query: 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            VR LMK K V+K  G S IE+ N+VH F + D  HP+S++IY  L  + G L+ EG+ P
Sbjct: 546 SVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTP 605

Query: 392 QTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS-IKIVKNLRVCPDCHAVFKLI 450
            T +VLHD+GE +K  S+  HSEKLA+AFGLI    G S I+I+KN+R+C DCH   K  
Sbjct: 606 NTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFA 665

Query: 451 SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           S+  GR+I++RD NRFHHF  G CSC D W
Sbjct: 666 SRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 172/342 (50%), Gaps = 18/342 (5%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++   L+ LYA+ G +  A+ LF  M +R   S   +L+ YAK G +   +  FD M 
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +D V +N  I G++ +    E+L LF+RM  E  EP E T V++L+A  Q+  L  G+ 
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  I   RN   NV +  AL +MY+KCG ++ AR +FD +  K++V WN MI GYA +G
Sbjct: 177 IHGSII-VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +  + L ++M      P  +T   +++A    G V+E RR F+  K     E  +  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFK-----EKDIVCW 290

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRL-----HGNIALGEKIA 300
             M+   ++ G+ E+A  L  +M    IEPDS    +++ +C       HG    G+ I 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             L +  L +S     L ++Y+  G  D    V  LM  + V
Sbjct: 351 AGLNNNLLVSSA----LIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 32/177 (18%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+ +L VS++L+D+Y++ G +  A  +F  MP R++VS   M+                 
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIV---------------- 396

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          G AQ+G   +AL LF  ML +K +P+ VT + +LSAC     +E 
Sbjct: 397 ---------------GCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQ 441

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           G+     I N   +   +     ++N+  + G ++ A  L+ +  +D D ++W++++
Sbjct: 442 GQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 315/510 (61%), Gaps = 41/510 (8%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE------------ 56
           ++++  +L D+YA+ G++  A  LF  + +++LVS   M++ YAK G+            
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248

Query: 57  -----------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
                                  V  AR +F + +EKD+VCW  M+ GYA++G   +AL+
Sbjct: 249 LSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALL 308

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALIN 151
           LF  ML E +EP+  T  +V+S+C ++ +L  G+ +H  S +    N   N+ V +ALI+
Sbjct: 309 LFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNN---NLLVSSALID 365

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MYSKCG + DAR VF+ +  ++VV WN+MIVG A +G  KDAL+LF  M + + KP ++T
Sbjct: 366 MYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVT 425

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           FIG+LSAC H   + +G+ +F+++ +++ + P ++HY CMVNLL R G++E+A  L+ +M
Sbjct: 426 FIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
             +PD ++W TLL  C   G+I   E  A +L   +   +  Y++LSN+YA++G W  VA
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVA 545

Query: 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            VR LMK K V+K  G S IE+ N+VH F + D  HP+S++IY  L  + G L+ EG+ P
Sbjct: 546 SVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTP 605

Query: 392 QTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS-IKIVKNLRVCPDCHAVFKLI 450
            T +VLHD+GE +K  S+  HSEKLA+AFGLI    G S I+I+KN+R+C DCH   K  
Sbjct: 606 NTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFA 665

Query: 451 SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           S+  GR+I++RD NRFHHF  G CSC D W
Sbjct: 666 SRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 173/342 (50%), Gaps = 18/342 (5%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++   L+ LYA+ G +  A+ LF  M +R + S   +L+ YAK G +   +  FD M 
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +D V +N  I G++ +    E+L LF+RM  E  EP E T V++L+A  Q+  L  G+ 
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  I   RN   NV +  AL +MY+KCG ++ AR +FD +  K++V WN MI GYA +G
Sbjct: 177 IHGSII-VRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +  + L ++M      P  +T   +++A    G V+E RR F+  K     E  +  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFK-----EKDIVCW 290

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRL-----HGNIALGEKIA 300
             M+   ++ G+ E+A  L  +M    IEPDS    +++ +C       HG    G+ I 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             L +  L +S     L ++Y+  G  D    V  LM  + V
Sbjct: 351 AGLNNNLLVSSA----LIDMYSKCGFIDDARSVFNLMPTRNV 388



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 32/177 (18%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+ +L VS++L+D+Y++ G +  A  +F  MP R++VS   M+                 
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIV---------------- 396

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          G AQ+G   +AL LF  ML +K +P+ VT + +LSAC     +E 
Sbjct: 397 ---------------GCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQ 441

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           G+     I N   +   +     ++N+  + G ++ A  L+ +  +D D ++W++++
Sbjct: 442 GQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 305/483 (63%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L KD  V ++++D+Y + G V    KLF              +T  ++ G V  A 
Sbjct: 279 IKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKAL 338

Query: 62  VLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            +F   +E+    +VV W  +I G AQ+G   EAL LFR M    V+PN VT  ++L AC
Sbjct: 339 EMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPAC 398

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G I AL  GR  H +      +  +V VG+ALI+MY+KCG +K +++VF+ +  K++V W
Sbjct: 399 GNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCW 457

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           NS++ GY+MHG  K+ + +F  + R RLKP  I+F  LLSAC   GL +EG ++FN M +
Sbjct: 458 NSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSE 517

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           EY I+P++EHY CMVNLL RAG+++EAY L+ ++  EPDS +WG LL +CRL  N+ L E
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAE 577

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A+ L      N GTYVL+SNIYAA G W  V  +R  M+  G++K PGCS I++ NKV
Sbjct: 578 IAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKV 637

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           +  LA D  HP+  +I   ++EI+  ++  G+ P     L D+ E++++  L  HSEKLA
Sbjct: 638 YTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLA 697

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           V FGL++T  GT ++++KNLR+C DCHAV K IS + GR+I +RD NRFHHF +G CSCG
Sbjct: 698 VVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCG 757

Query: 478 DYW 480
           D+W
Sbjct: 758 DFW 760



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 166/360 (46%), Gaps = 44/360 (12%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD D +V  SL  +Y R G +  A K+F  M ++ +V+ + +L  YA++G +     +  
Sbjct: 147 LDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILS 206

Query: 66  DME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +ME    E ++V WN ++ G+ + G   EA+++F++M      P++VT  +VL + G   
Sbjct: 207 EMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSE 266

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN----------- 170
            L  GR IH Y+     +K    + +A+++MY K G +     +FD              
Sbjct: 267 NLNMGRQIHGYVIKQGLLKDKCVI-SAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYI 325

Query: 171 ---------DK---------------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
                    DK               +VV W S+I G A +G   +AL+LF EM    +K
Sbjct: 326 TGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P+ +T   +L AC +   +  GR         + ++  V     ++++ ++ G+++ + +
Sbjct: 386 PNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMS-Q 443

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326
           +V +M    + V W +L+    +HG       I E L+   L     ++  +++ +A G 
Sbjct: 444 IVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD--FISFTSLLSACGQ 501



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 136/299 (45%), Gaps = 37/299 (12%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+       A ++   + +  V  ++ +I    +  L ++++ +F RM +  + P+
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                 +   C ++ A ++G+ IH  +     + ++  V  +L +MY +CG + DAR VF
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHC-VACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVF 174

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           DR+++KDVV  ++++ GYA  G  ++ +++ +EM +  ++P+ +++ G+LS    +G   
Sbjct: 175 DRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHK 234

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E    F           K+ H G                         PD V   ++L +
Sbjct: 235 EAVIMFQ----------KMHHLG-----------------------FCPDQVTVSSVLPS 261

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARV--RTLMKEKGV 342
                N+ +G +I  Y+I Q L      +  + ++Y   G+  G+ ++     M E GV
Sbjct: 262 VGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGV 320


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/452 (45%), Positives = 301/452 (66%), Gaps = 4/452 (0%)

Query: 30  EKLFATMPQRSLVS-LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
            KL   +   S VS + ++++ Y+K   V  A  +F+++E+ +V  WN MI GYAQ+G  
Sbjct: 370 HKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVT-WNAMILGYAQNGCV 428

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EAL LF  M ++ ++ +  T V V++A          +WIH  +     +  NV V TA
Sbjct: 429 KEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHG-LAVRACMDNNVFVSTA 487

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L++MY+KCG++K AR +FD + ++ V+ WN+MI GY  HG GK+ L LFNEM +  +KP+
Sbjct: 488 LVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPN 547

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           DITF+ ++SAC+H+G V EG   F +M+++Y +EP ++HY  MV+LL RAGQ+++A+  +
Sbjct: 548 DITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFI 607

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            +M I+P   + G +LGAC++H N+ LGEK A+ L   +    G +VLL+NIYA+   WD
Sbjct: 608 QEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWD 667

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            VA+VRT M++KG+ K PGCS +EL N++H F +G   HP+SK+IY  LE +   +KA G
Sbjct: 668 KVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAG 727

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YVP    + HD+ E  K+  L  HSE+LA+AFGL++T PGT++ I KNLRVC DCH   K
Sbjct: 728 YVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTK 786

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            IS  TGR+I++RD  RFHHF NG+CSCGDYW
Sbjct: 787 YISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/253 (35%), Positives = 137/253 (54%), Gaps = 5/253 (1%)

Query: 40  SLVSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV++T  +L  Y K G    AR++F  M  K VV WN MIDG AQ+G + EA   F +M
Sbjct: 279 SLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKM 338

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L E   P  VT + VL AC  +G LE G ++H  ++  + +  NV V  +LI+MYSKC  
Sbjct: 339 LDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLK-LDSNVSVMNSLISMYSKCKR 397

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  A  +F+ + +K  V WN+MI+GYA +G  K+AL LF  M    +K    T +G+++A
Sbjct: 398 VDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            A    VN   ++ + +     ++  V     +V++ ++ G ++ A KL  DM  E   +
Sbjct: 457 LADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKL-FDMMQERHVI 514

Query: 279 LWGTLLGACRLHG 291
            W  ++     HG
Sbjct: 515 TWNAMIDGYGTHG 527



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 137/247 (55%), Gaps = 4/247 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + +L  +T +++ YAK  ++  A  +F+ M+ KD+V W  ++ GYAQ+G A  AL L  +
Sbjct: 177 ESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQ 236

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M     +P+ VT V++L A   + AL  GR IH Y   S   +  V V  AL++MY KCG
Sbjct: 237 MQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRS-GFESLVNVTNALLDMYFKCG 295

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S + ARLVF  +  K VV WN+MI G A +G  ++A   F +M      P+ +T +G+L 
Sbjct: 296 SARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLL 355

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           ACA+ G +  G  F + + D+  ++  V     ++++ S+  +V+ A  +  ++  E  +
Sbjct: 356 ACANLGDLERG-WFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL--EKTN 412

Query: 278 VLWGTLL 284
           V W  ++
Sbjct: 413 VTWNAMI 419



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 5/288 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ + K G  + A  +F+ +E K  V +++M+ GYA++    +AL  F RM+ ++V 
Sbjct: 83  TKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVR 142

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
                   +L  CG+   L+ GR IH  I  +   + N+ V TA++++Y+KC  + +A  
Sbjct: 143 LVVGDYACLLQLCGENLDLKKGREIHGLII-TNGFESNLFVMTAVMSLYAKCRQIDNAYK 201

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+R+  KD+V W +++ GYA +G  K ALQL  +M     KP  +T + +L A A    
Sbjct: 202 MFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKA 261

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  GR   +        E  V     ++++  + G    A +LV         V W T++
Sbjct: 262 LRIGRS-IHGYAFRSGFESLVNVTNALLDMYFKCGSARIA-RLVFKGMRSKTVVSWNTMI 319

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
             C  +G     E  A +L   +     T V +  +  A  N   + R
Sbjct: 320 DGCAQNGESE--EAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLER 365



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  +D +++VST+LVD+YA+ G + +A KLF  M +R +++   M              
Sbjct: 474 VRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAM-------------- 519

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                            IDGY  HG+  E L LF  M    V+PN++T ++V+SAC   G
Sbjct: 520 -----------------IDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSG 562

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            +E G  +   ++    ++  +   +A++++  + G L DA
Sbjct: 563 FVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDA 603


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 291/436 (66%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  YA+ G +  A  +FD ++ K+ V WN +I G+A+ G    AL+ F  ML    E
Sbjct: 191 SALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFE 250

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
               T  +V S+  ++GALE G+W+H+++  SR  K+    G  L++MY+K GS+ DAR 
Sbjct: 251 ATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQ-KMTAFAGNTLLDMYAKSGSMIDARK 309

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDRV+DKD+V WN+M+  +A +G GK+A+  F EM +  +  + +TF+ +L+AC+H GL
Sbjct: 310 VFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGL 369

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG+R+F  MK EY +EP+++H+  +V LL RAG +  A   +  M IEP + +WG LL
Sbjct: 370 VKEGKRYFEMMK-EYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALL 428

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H N  +G+  A+++   +  +SG  VLL NIYA+ G WD  ARVR +MK  GV+K
Sbjct: 429 AACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKK 488

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N VH F+A D  HP+++EIY M  +I+  ++ EGYVP    VL  + +++
Sbjct: 489 EPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQE 548

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L+ HSEKLA+AF LI    G +I+I+KN+R+C DCH+ FK ISK  GR+I++RD N
Sbjct: 549 REANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTN 608

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG+CSC DYW
Sbjct: 609 RFHHFSNGSCSCADYW 624



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 145/272 (53%), Gaps = 12/272 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G V  AR +FD+M  KD+V W  +I GYAQ+ +  EA+ L   ML  + +P
Sbjct: 91  SLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKP 150

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T  ++L A G       GR IH+ +    +   +V VG+AL++MY++CG +  A  V
Sbjct: 151 NGFTFASLLKAAGAHADSGIGRQIHA-LAVKCDWHEDVYVGSALLDMYARCGMMDMATAV 209

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD+++ K+ V WN++I G+A  G G+ AL  F EM R   + +  T+  + S+ A  G +
Sbjct: 210 FDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGAL 269

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYG--CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +G+     M        K+  +    ++++ +++G + +A K V D   + D V W T+
Sbjct: 270 EQGKWVHAHMIKS---RQKMTAFAGNTLLDMYAKSGSMIDARK-VFDRVDDKDLVTWNTM 325

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
           L A   +G   LG++   +   + +  SG Y+
Sbjct: 326 LTAFAQYG---LGKEAVSHF--EEMRKSGIYL 352



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 2/124 (1%)

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           A ++ P        ++AC Q   LE  R +H+++ +SR    +  +  +LI++Y KCGS+
Sbjct: 44  AGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSR-FAGDAFLDNSLIHLYCKCGSV 102

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            +AR VFD +  KD+V W S+I GYA +   ++A+ L   M + R KP+  TF  LL A 
Sbjct: 103 LEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAA 162

Query: 220 -AHA 222
            AHA
Sbjct: 163 GAHA 166



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 37/180 (20%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +   +L+D+YA+ G ++ A K+F  +  + LV+  TMLT                     
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLT--------------------- 327

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                      +AQ+GL  EA+  F  M    +  N+VT + +L+AC   G ++ G+   
Sbjct: 328 ----------AFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGK--- 374

Query: 131 SYIENSRNIKVNVQVG--TALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
            Y E  +   +  ++     ++ +  + G L  A   +F    +    VW +++    MH
Sbjct: 375 RYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMH 434


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/436 (45%), Positives = 297/436 (68%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y +  +V +AR +FD + E  VVC+N MI GYA+    NEAL LFR M  + ++P
Sbjct: 169 TLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE+T ++VLS+C  +G+L+ G+WIH Y +     K  V+V TALI+M++KCGSL DA  +
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSI 287

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+++  KD   W++MIV YA HG  + ++ +F  M    ++P +ITF+GLL+AC+H G V
Sbjct: 288 FEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRV 347

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EGR++F+ M  ++ I P ++HYG MV+LLS AG +E+AY+ +  + I P  +LW  LL 
Sbjct: 348 EEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLA 407

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  H N+ L EK++E +   + ++ G YV+LSN+YA    W+ V  +R +MK++   K 
Sbjct: 408 ACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKV 467

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE++N VHEF +GD     + +++  L+E+   LK  GYVP T +V+H ++ +++
Sbjct: 468 PGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQE 527

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSEKLA+ FGL++T PGT+I++VKNLRVC DCH   KLIS   GRK++ RD  
Sbjct: 528 KEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXRDVQ 587

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGD+W
Sbjct: 588 RFHHFEDGKCSCGDFW 603



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 3/268 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +  L    T    +  ++ AR LF+ M E D+V +N M  GY++     E   LF  +L 
Sbjct: 63  VAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE 122

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + + P+  T  ++L AC    ALE GR +H  +     +  NV V   LINMY++C  + 
Sbjct: 123 DGILPDNYTFPSLLKACAVAKALEEGRQLHC-LSMKLGLDDNVYVCPTLINMYTECEDVD 181

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFDR+ +  VV +N+MI GYA      +AL LF EM    LKP++IT + +LS+CA
Sbjct: 182 SARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA 241

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G ++ G ++ +    +++    V+    ++++ ++ G +++A  +   M+ + D+  W
Sbjct: 242 LLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAW 299

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++ A   HG       + E + S+N+
Sbjct: 300 SAMIVAYANHGKAEKSMLMFERMRSENV 327



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  +AK G +  A  +F+ M  KD   W+ MI  YA HG A +++++F RM +E V+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+T + +L+AC   G +E GR   S + +   I  +++   +++++ S  G+L+DA  
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYE 388

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHG 188
             D++      ++W  ++   + H 
Sbjct: 389 FIDKLPISPTPMLWRILLAACSSHN 413


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 291/436 (66%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y    +V AAR +FD + E  VV +N +I   A++   NEAL LFR +    ++P
Sbjct: 175 TLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKP 234

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            +VT +  LS+C  +GAL+ GRWIH Y++ +      V+V TALI+MY+KCGSL DA  V
Sbjct: 235 TDVTMLVALSSCALLGALDLGRWIHEYVKKN-GFDQYVKVNTALIDMYAKCGSLDDAVSV 293

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D   W++MIV YA HG G  A+ +  EM + +++P +ITF+G+L AC+H GLV
Sbjct: 294 FKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLV 353

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG  +F++M  EY I P ++HYGCM++LL RAG++EEA K + ++ I+P  +LW TLL 
Sbjct: 354 EEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLS 413

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           +C  HGN+ + + + + +   + ++ G YV+LSN+ A  G WD V  +R +M +KG  K 
Sbjct: 414 SCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKV 473

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
           PGCSSIE++N VHEF +GD  H  S  ++  L+E+   LK  GYVP T +V + DI +++
Sbjct: 474 PGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEE 533

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+ +GL++T PGT+I++VKNLRVC DCH   K IS   GR+I++RD  
Sbjct: 534 KEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQ 593

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 594 RFHHFKDGKCSCGDYW 609



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 3/252 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  L    T       +  A  +FD + + D+V +N M  GYA+      A++L  ++L 
Sbjct: 69  LTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLC 128

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             + P++ T  ++L AC ++ ALE G+ +H  +     +  N+ V   LINMY+ C  + 
Sbjct: 129 SGLLPDDYTFSSLLKACARLKALEEGKQLHC-LAVKLGVGDNMYVCPTLINMYTACNDVD 187

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFD++ +  VV +N++I   A +    +AL LF E+    LKP+D+T +  LS+CA
Sbjct: 188 AARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCA 247

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G ++ GR     +K     +  V+    ++++ ++ G +++A  +  DM    D+  W
Sbjct: 248 LLGALDLGRWIHEYVKKN-GFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMP-RRDTQAW 305

Query: 281 GTLLGACRLHGN 292
             ++ A   HG+
Sbjct: 306 SAMIVAYATHGH 317



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 3/146 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +  A  +F DM  +D   W+ MI  YA HG  ++A+ + R M   KV+
Sbjct: 275 TALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQ 334

Query: 105 PNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P+E+T + +L AC   G +E G  + HS + +   I  +++    +I++  + G L++A 
Sbjct: 335 PDEITFLGILYACSHTGLVEEGYEYFHS-MTHEYGIVPSIKHYGCMIDLLGRAGRLEEAC 393

Query: 164 LVFDRVNDKDV-VVWNSMIVGYAMHG 188
              D +  K   ++W +++   + HG
Sbjct: 394 KFIDELPIKPTPILWRTLLSSCSSHG 419



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 120/287 (41%), Gaps = 47/287 (16%)

Query: 100 AEKVEPN----EVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYS 154
           A + EPN    E  + ++LS   +  +L   + I +Y I+  +N   N  V T LIN  +
Sbjct: 21  APRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIKTHQN---NPTVLTKLINFCT 77

Query: 155 K---CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                 S+  A  +FD++   D+V++N+M  GYA       A+ L +++    L P D T
Sbjct: 78  SNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYT 137

Query: 212 FIGLLSACAHAGLVNEGRRFF---------------NTMKDEYAI--------------- 241
           F  LL ACA    + EG++                  T+ + Y                 
Sbjct: 138 FSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIG 197

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK 298
           EP V  Y  ++   +R  +  EA  L  +++   ++P  V     L +C L G + LG  
Sbjct: 198 EPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRW 257

Query: 299 IAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           I EY + +N  +    V   L ++YA  G+ D    V   M  +  Q
Sbjct: 258 IHEY-VKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQ 303


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 300/444 (67%), Gaps = 4/444 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  +  ++  Y   G    A  +FD+   +DVV WN+MI+ +   GL+ +A  L   M  
Sbjct: 146 LFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTK 205

Query: 101 -EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV--GTALINMYSKCG 157
            + + P+EVT V+++ AC Q+G LE G+++HSY +     ++N  +   TAL++MY+KCG
Sbjct: 206 LDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCG 265

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+  A  VF R+  ++V  WN++I G AMHG G+DA+ LF++M   +L P D+TFI LL 
Sbjct: 266 SIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLC 325

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+HAGLV+EG   F  MK+++ IEP++EHYGC+V+LL RA +V++A   + +M I+ +S
Sbjct: 326 ACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS 385

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
           VLW TLLGACR  G+  L EKI   +I     + G YV+LSN+YA +  WD   ++R  M
Sbjct: 386 VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQM 445

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIV 396
           K KG++K PGCS IEL+  +H+F+AGD  H ++++IY M+EE+   +  + G+VP T  V
Sbjct: 446 KNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANV 505

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           L DI E++K++SL +HSEKLA+A GLIST  G+ I+IVKNLRVC DCH+  K+ SK   R
Sbjct: 506 LFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNR 565

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I+ RDR+RFHHF  G+CSC D+W
Sbjct: 566 EIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 5/244 (2%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           +  G++  AR LF  M+  D    N MI GYA+     EA+ L+  M+   V  +  T  
Sbjct: 56  SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            VL+AC ++GA++ GR  H  +  +     ++ V  ALI  Y  CGS   A  VFD    
Sbjct: 116 FVLAACARLGAVKLGRRFHCEVLKN-GFGSDLFVINALIQFYHNCGSFGCACDVFDESTV 174

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRR 230
           +DVV WN MI  +   G  + A  L +EM ++  L+P ++T + L+ ACA  G +  G+ 
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234

Query: 231 FFNTMK--DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
             +  K  D++ I   +     +V++ ++ G ++ A ++   M++  +   W  L+G   
Sbjct: 235 LHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLA 293

Query: 289 LHGN 292
           +HG+
Sbjct: 294 MHGH 297



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 42/229 (18%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           S  G L  AR +F ++ + D  + N+MI GYA      +A+ L+  M    +   + T+ 
Sbjct: 56  SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115

Query: 214 GLLSACAHAGLVNEGRRFFNTM------KDEYAIEPKVEHY------GC----------- 250
            +L+ACA  G V  GRRF   +       D + I   ++ Y      GC           
Sbjct: 116 FVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVR 175

Query: 251 -------MVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALGEKI 299
                  M+N     G  E+A+ L+ +M     + PD V   +L+ AC   GN+  G+ +
Sbjct: 176 DVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFL 235

Query: 300 AEYLISQNLAN---SGTYVL---LSNIYAAIGNWDGVARVRTLMKEKGV 342
             Y  S+ L     +   VL   L ++YA  G+ D   +V   M+ + V
Sbjct: 236 HSY--SKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 282



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 32/180 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF ++ DL + T+LVD+YA+ G +  A ++F  M  R++ +   ++   A  G    A  
Sbjct: 244 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAIS 303

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD ME                                +K+ P++VT +A+L AC   G 
Sbjct: 304 LFDQMEH-------------------------------DKLMPDDVTFIALLCACSHAGL 332

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
           ++ G  +   ++N   I+  ++    ++++  +   + DA    + +  K + V+W +++
Sbjct: 333 VDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 392


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/483 (44%), Positives = 304/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEV 57
           V+  +  D Y    ++      GD+ S E +   M     Q++    TT++  YAK G++
Sbjct: 204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             AR +FD M EKD+V W+ MI GYA +    E + LF +ML E ++P++ + V  LS+C
Sbjct: 264 EKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSC 323

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +GAL+ G W  S I+    +  N+ +  ALI+MY+KCG++     VF  + +KD+V+ 
Sbjct: 324 ASLGALDLGEWGISLIDRHEFL-TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+ I G A +G  K +  +F +  ++ + P   TF+GLL  C HAGL+ +G RFFN +  
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            YA++  VEHYGCMV+L  RAG +++AY+L+ DM + P++++WG LL  CRL  +  L E
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
            + + LI+    N+G YV LSNIY+  G WD  A VR +M +KG++K PG S IEL  KV
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFLA D  HP S +IY  LE++   ++  G+VP T+ V  D+ E++K+  L  HSEKLA
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLA 622

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VA GLIST  G  I++VKNLRVC DCH V KLISK T R+I++RD NRFH F NG+CSC 
Sbjct: 623 VALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCN 682

Query: 478 DYW 480
           DYW
Sbjct: 683 DYW 685



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 148/255 (58%), Gaps = 3/255 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           + ++T++L+ Y+  G +  A  LFD++ ++ VV W  +  GY   G   EA+ LF++M+ 
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVE 205

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V+P+    V VLSAC  +G L+SG WI  Y+E    ++ N  V T L+N+Y+KCG ++
Sbjct: 206 MGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFD + +KD+V W++MI GYA + F K+ ++LF +M +  LKP   + +G LS+CA
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G ++ G  +  ++ D +     +     ++++ ++ G +   +++  +MK E D V+ 
Sbjct: 325 SLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIM 382

Query: 281 GTLLGACRLHGNIAL 295
              +     +G++ L
Sbjct: 383 NAAISGLAKNGHVKL 397



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 125/244 (51%), Gaps = 5/244 (2%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV+L    T + +Q + +   +LF   +  ++  +N +I+G+  + L +E L LF  +  
Sbjct: 47  LVNLLLKRTLFFRQTKYS--YLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRK 104

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             +  +  T   VL AC +  + + G  +HS +        +V   T+L+++YS  G L 
Sbjct: 105 HGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKC-GFNHDVAAMTSLLSIYSGSGRLN 163

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  +FD + D+ VV W ++  GY   G  ++A+ LF +M  + +KP     + +LSAC 
Sbjct: 164 DAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACV 223

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H G ++ G      M +E  ++        +VNL ++ G++E+A + V D  +E D V W
Sbjct: 224 HVGDLDSGEWIVKYM-EEMEMQKNSFVRTTLVNLYAKCGKMEKA-RSVFDSMVEKDIVTW 281

Query: 281 GTLL 284
            T++
Sbjct: 282 STMI 285


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 300/436 (68%), Gaps = 3/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YA+   +  A+V+F+ +  K+VV WN +I G+A+ G     + LF +ML +  E
Sbjct: 245 SSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFE 304

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P   T  +VL AC   G+LE G+W+H+++  S    +   +G  LI+MY+K GS+KDA+ 
Sbjct: 305 PTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPI-AYIGNTLIDMYAKSGSIKDAKK 362

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF R+  +D+V WNS+I GYA HG G +ALQLF +M + +++P++ITF+ +L+AC+H+GL
Sbjct: 363 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGL 422

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG+ +F  MK ++ IE +V H+  +V+LL RAG++ EA K + +M I+P + +WG LL
Sbjct: 423 LDEGQYYFELMK-KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H N+ LG   AE +   +  +SG +VLLSNIYA+ G     A+VR +MKE GV+K
Sbjct: 482 GACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKK 541

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N+VH F+A D  HP  +EI  M E+I+G +K  GYVP T  VL  + ++ 
Sbjct: 542 EPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQD 601

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++  L+ HSEKLA+AF ++ T PG +I+I KN+R+C DCH+ FK  S+  GR+I++RD N
Sbjct: 602 RELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTN 661

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF++G CSC DYW
Sbjct: 662 RFHHFLHGMCSCRDYW 677



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 148/251 (58%), Gaps = 4/251 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV L  +L  YAK G +  A+ LFD M  KD+V W V+I GY+Q G A+EAL LF +ML 
Sbjct: 140 LVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLH 199

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
              +PNE T  ++L A G   +   GR +H++        +NV VG++L++MY++   ++
Sbjct: 200 LGFQPNEFTLSSLLKASGTGPSDHHGRQLHAF-SLKYGYDMNVHVGSSLLDMYARWAHMR 258

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A+++F+ +  K+VV WN++I G+A  G G+  ++LF +M R   +P+  T+  +L ACA
Sbjct: 259 EAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACA 317

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            +G + +G ++ +    +   +P       ++++ +++G +++A K+   + ++ D V W
Sbjct: 318 SSGSLEQG-KWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL-VKQDIVSW 375

Query: 281 GTLLGACRLHG 291
            +++     HG
Sbjct: 376 NSIISGYAQHG 386



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 102/197 (51%), Gaps = 6/197 (3%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +EP       +L+ C  +  L+ GR IH++I++S   + ++ +   ++NMY+KCGSL++A
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSS-TFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + +FD++  KD+V W  +I GY+  G   +AL LF +M  +  +P++ T   LL A    
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
              + GR+  +    +Y  +  V     ++++ +R   + EA K++ +     + V W  
Sbjct: 220 PSDHHGRQ-LHAFSLKYGYDMNVHVGSSLLDMYARWAHMREA-KVIFNSLAAKNVVSWNA 277

Query: 283 LLGACRLHGNIALGEKI 299
           L+     H     GE +
Sbjct: 278 LIAG---HARKGEGEHV 291



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 37/180 (20%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+  +L+D+YA+ G +  A+K+F  + ++ +VS  ++++ YA                  
Sbjct: 342 YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYA------------------ 383

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                        QHGL  EAL LF +ML  KV+PNE+T ++VL+AC   G L+ G++  
Sbjct: 384 -------------QHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQY-- 428

Query: 131 SYIENSRNIKVNVQVG--TALINMYSKCGSLKDARLVFDRVNDKDV-VVWNSMIVGYAMH 187
            Y E  +  K+  QV     ++++  + G L +A    + +  K    VW +++    MH
Sbjct: 429 -YFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMH 487


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/436 (47%), Positives = 307/436 (70%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK  ++  A  +FD++ ++++V W+ MI GYA+ GL NEAL LFR M    V 
Sbjct: 131 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 190

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+EVT V+V+SAC   GAL++G+W+H+YI N + I+ ++++ TAL+NMY+KCG ++ A+ 
Sbjct: 191 PDEVTMVSVISACAASGALDTGKWVHAYI-NKQLIETDLELSTALVNMYAKCGCIERAKE 249

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  KD   W+SMIVG A++G  +DAL+ F  M   ++KP+ +TFIG+LSACAH+GL
Sbjct: 250 VFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGL 309

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EGRR++++M  E+ I P +E YGCMV+LL RA  VE+A  LV  M I P+ V+W TLL
Sbjct: 310 VSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 368

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
             C+   N+   E +A+ L+     N+  Y+LLSN+YA++  W+ +++VR  MK  G++ 
Sbjct: 369 VGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKA 428

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCSSIE+   VHEF+ GD  HP++ E+  +L +I+  + A G+ P    VLH++ +++
Sbjct: 429 VPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEE 488

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+N+L  HSE+LA+A+GL+ T+   +I+IVKNLRVC DCH V K+IS    R+I++RDR 
Sbjct: 489 KENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRV 548

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH FVNG+CSC D+W
Sbjct: 549 RFHKFVNGSCSCRDFW 564



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 133/239 (55%), Gaps = 5/239 (2%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEKVE-PNEVTAVA 112
           G++  AR LF  ++  ++  WN MI G +Q    + E ++LFR+M+      PN  T   
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           VL AC  + ALE G+ +H+ +  S     +  V TAL+N Y+KC  +  A  VFD + D+
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKS-GFGSSPFVETALVNFYAKCEDIVLASKVFDEITDR 156

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           ++V W++MI GYA  G   +AL LF +M +  + P ++T + ++SACA +G ++ G ++ 
Sbjct: 157 NLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG-KWV 215

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +   ++  IE  +E    +VN+ ++ G +E A K V D     D+  W +++    ++G
Sbjct: 216 HAYINKQLIETDLELSTALVNMYAKCGCIERA-KEVFDAMPVKDTKAWSSMIVGLAING 273



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 35/180 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++ DL +ST+LV++YA+ G +  A+++F  MP                            
Sbjct: 224 IETDLELSTALVNMYAKCGCIERAKEVFDAMPV--------------------------- 256

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
               KD   W+ MI G A +GLA +AL  F RM   KV+PN VT + VLSAC   G +  
Sbjct: 257 ----KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSE 312

Query: 126 G-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG 183
           G R+  S +E    I  ++++   ++++  +   ++DA  LV       + V+W +++VG
Sbjct: 313 GRRYWSSMLEF--GIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 370



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 42/211 (19%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM-HGFGKDALQLFNEMCRIRLK-PSDIT 211
           S  G +  AR +F ++   ++  WNSMI G +      K+ + LF +M R     P+  T
Sbjct: 35  SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 94

Query: 212 FIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEH----------------------- 247
              +L AC+    + EG++   N +K  +   P VE                        
Sbjct: 95  MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 154

Query: 248 ------YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK 298
                 +  M++  +R G V EA  L  DM+   + PD V   +++ AC   G +  G+ 
Sbjct: 155 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKW 214

Query: 299 IAEY----LISQNLANSGTYVLLSNIYAAIG 325
           +  Y    LI  +L  S   V   N+YA  G
Sbjct: 215 VHAYINKQLIETDLELSTALV---NMYAKCG 242


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/439 (48%), Positives = 293/439 (66%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT+L  YAK G V+ A  +F  M  K+ V W+ MI  +A++ +  +AL LF+ M+ E  
Sbjct: 221 MTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAH 280

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +  PN VT V VL AC  + ALE G+ IH YI   R +   + V  ALI MY +CG +  
Sbjct: 281 DSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR-RGLDSILPVLNALITMYGRCGEILM 339

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            + VFD + ++DVV WNS+I  Y MHGFGK A+Q+F  M      PS I+FI +L AC+H
Sbjct: 340 GQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSH 399

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV EG+  F +M  +Y I P +EHY CMV+LL RA +++EA KL+ DM  EP   +WG
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWG 459

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG+CR+H N+ L E+ +  L      N+G YVLL++IYA    W     V  L++ +G
Sbjct: 460 SLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARG 519

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK PGCS IE+  KV+ F++ D  +P+ +EI+ +L +++  +KA+GYVPQT +VL+D+ 
Sbjct: 520 LQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLD 579

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+  +  HSEKLAVAFGLI+T  G +I+I KNLR+C DCHAV K ISKF  R+I++R
Sbjct: 580 EEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVR 639

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSCGDYW
Sbjct: 640 DVNRFHHFKDGVCSCGDYW 658



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 132/285 (46%), Gaps = 11/285 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y + G +  AR +FD+  E+ +  WN +    A  G   E L L+ +M    + 
Sbjct: 117 TKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIP 176

Query: 105 PNEVTAVAVLSACG----QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   VL AC      +  L+ G+ IH++I      + N+ V T L+++Y+K GS+ 
Sbjct: 177 SDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILR-HGYEANIHVMTTLLDVYAKFGSVS 235

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK--PSDITFIGLLSA 218
            A  VF  +  K+ V W++MI  +A +     AL+LF  M        P+ +T + +L A
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQA 295

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA    + +G+     +     ++  +     ++ +  R G++    ++  +MK   D V
Sbjct: 296 CAGLAALEQGKLIHGYILRR-GLDSILPVLNALITMYGRCGEILMGQRVFDNMK-NRDVV 353

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
            W +L+    +HG      +I E +I Q   +S +Y+    +  A
Sbjct: 354 SWNSLISIYGMHGFGKKAIQIFENMIHQ--GSSPSYISFITVLGA 396



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           +L  +  P + T   ++ +C Q  +L  G  +H  + +S     +  + T LINMY + G
Sbjct: 69  LLCCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSS-GFDQDPFLATKLINMYYELG 127

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+  AR VFD   ++ + VWN++    AM G GK+ L L+ +M  I +     T+  +L 
Sbjct: 128 SIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLK 187

Query: 218 AC 219
           AC
Sbjct: 188 AC 189


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/451 (46%), Positives = 295/451 (65%), Gaps = 2/451 (0%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++  T  +RS    T +L  Y K G    A  +F+ +E KD++ W+ M+ GYAQ G   E
Sbjct: 418 EVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEE 477

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQ-IGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           A  LF +++ E ++PNE T  +V++AC     A E G+  H+Y    R +   + V +AL
Sbjct: 478 AAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMR-LNNALCVSSAL 536

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           + MY+K G++  A  VF R  ++D+V WNSMI GY+ HG  K AL++F+EM +  +    
Sbjct: 537 VTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDA 596

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           +TFIG+++AC HAGLV +G+++FN+M +++ I P ++HY CM++L SRAG +E+A  ++ 
Sbjct: 597 VTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIIN 656

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
           +M   P + +W TLLGA R+H N+ LGE  AE LIS    +S  YVLLSN+YAA GNW  
Sbjct: 657 EMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQE 716

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389
              VR LM ++ V+KEPG S IE+ NK + FLAGDL HP S +IY  L E++  LK  GY
Sbjct: 717 RTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGY 776

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKL 449
            P T+ V HDI ++QK+  L  HSE+LA+AFGLI+T P   I+IVKNLRVC DCH   KL
Sbjct: 777 QPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKL 836

Query: 450 ISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +S    R I++RD NRFHHF +G CSCGDYW
Sbjct: 837 VSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K   V   R +FD+M E++VV W  ++ GY+ +GL      LF +M  E V 
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVL 191

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T   V++A    G +  G  +H+ +      +  + V  +LI++YS+ G L+DAR 
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVK-HGFEEAIPVFNSLISLYSRLGMLRDARD 250

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA---H 221
           VFD++  +D V WNSMI GY  +G   +  ++FN+M    +KP+ +TF  ++ +CA    
Sbjct: 251 VFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRE 310

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
             LV   +     +K  +  +  V     ++  LS+  ++++A  L   M+   + V W 
Sbjct: 311 LALVKLMQ--CKALKSGFTTDQIV--ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWT 366

Query: 282 TLLGACRLHGNIALGEKIAEYLISQ 306
            ++  C  +G    G   A  L SQ
Sbjct: 367 AMISGCLQNG----GNDQAVNLFSQ 387



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 33/335 (9%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + ++    ++++ Y++ G +  AR +FD ME +D V WN MI GY ++G   E   +F +
Sbjct: 226 EEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNK 285

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M    V+P  +T  +V+ +C  +  L   + +      S     +  V TAL+   SKC 
Sbjct: 286 MQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKS-GFTTDQIVITALMVALSKCK 344

Query: 158 SLKDARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            + DA  +F  + + K+VV W +MI G   +G    A+ LF++M R  +KP+  T+  +L
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404

Query: 217 ----------------------SACAHAGLVNEGRRFFNTM---KDEYAIEPK-VEHYGC 250
                                 S+     L++   +  NT+   K    IE K +  +  
Sbjct: 405 TVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSA 464

Query: 251 MVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIA-LGEKIAEYLISQ 306
           M+   ++ G+ EEA KL   +    I+P+   + +++ AC      A  G++   Y I  
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKM 524

Query: 307 NLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            L N+      L  +YA  GN D    V    KE+
Sbjct: 525 RLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER 559



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 60  ARVLFDDMEEKDVVC--WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
           A  LFD +  +       N ++  Y++     EAL LF  +L   ++P+E T   V + C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 118 GQIGALES--GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
              G+L+   GR +H        +  +V VGT+L++MY K  ++ D R VFD + +++VV
Sbjct: 104 A--GSLDGKLGRQVHCQCVKFGLVD-HVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVV 160

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            W S++ GY+ +G      +LF +M    + P+  T   +++A  + G+V  G +  + M
Sbjct: 161 SWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAM 219

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             ++  E  +  +  +++L SR G + +A  +   M+I  D V W +++ 
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIA 268



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 40/220 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+  L VS++LV +YA+ G++ SA ++F    +R LVS  +M++ Y++ G+   A 
Sbjct: 522 IKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKAL 581

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M+++     N+ +D                           VT + V++AC   G
Sbjct: 582 EVFDEMQKR-----NMDVDA--------------------------VTFIGVITACTHAG 610

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +E G+   + + N  +I   ++  + +I++YS+ G L+ A  + + +       VW ++
Sbjct: 611 LVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTL 670

Query: 181 IVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +H     G+ A +       I L+P D     LLS
Sbjct: 671 LGAARVHRNVELGELAAEKL-----ISLQPEDSAAYVLLS 705


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/467 (43%), Positives = 297/467 (63%), Gaps = 2/467 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TS++  Y   G +  AE+ F  MP + +++   M+    + GE+  AR +FD ME++D  
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNA 297

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  MI  Y + G   EAL LF +M  + V P+  + +++LS C  + +L+ GR +H+++
Sbjct: 298 TWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
              +    +V V + L+ MY KCG L  A+LVFDR   KD+++WNS+I GYA HG G++A
Sbjct: 358 VRCQ-FDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEA 416

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L++F+EM      P+ +T I +L+AC++ G + EG   F +M+ ++ + P VEHY C V+
Sbjct: 417 LKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           +L RAG+V++A +L+  M I+PD+ +WG LLGAC+ H  + L E  A+ L      N+G 
Sbjct: 477 MLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGP 536

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKE 372
           Y+LLS+I A+   W  VA +R  M+ K V K PGCS IE+  KVH F  G +R HP+   
Sbjct: 537 YILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAM 596

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I MMLE+ +G L+  GY P    VLHD+ E++K +SL  HSE+LAVA+GL+    G  I+
Sbjct: 597 ILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIR 656

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           ++KNLRVC DCHA  KLISK T R+I++RD NRFHHF NG CSC DY
Sbjct: 657 VMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 19/277 (6%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           S+V  Y   G    A ++F  MP+R++VS   +++ Y K   +  AR +F+ M E++VV 
Sbjct: 53  SIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS 112

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W  M+ GY Q G+  EA +LF RM     E NEV+   +       G ++  R ++  + 
Sbjct: 113 WTAMVKGYVQEGMVVEAELLFWRM----PERNEVSWTVMFGGLIDGGRIDDARKLYDMMP 168

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                  +V   T +I    + G + +AR +FD + +++V+ W +MI GY  +     A 
Sbjct: 169 GK-----DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVAR 223

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
           +LF  M     + +++++  +L     +G + +   FF  M     ++P +     M+  
Sbjct: 224 KLFEVMP----EKTEVSWTSMLLGYTLSGRIEDAEEFFEVM----PMKPVIA-CNAMIVA 274

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           L   G++ +A + V D   + D+  W  ++ A    G
Sbjct: 275 LGEVGEIVKARR-VFDQMEDRDNATWRGMIKAYERKG 310



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 152/368 (41%), Gaps = 62/368 (16%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++++     LV  Y +   +  A  +F  MP+R++VS T M+  Y ++G V  A +LF  
Sbjct: 76  ERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWR 135

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLF---------------------------RRML 99
           M E++ V W VM  G    G  ++A  L+                           R + 
Sbjct: 136 MPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIF 195

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGR-------------W--------IHSYIENSRN 138
            E  E N +T   +++  GQ   ++  R             W        +   IE++  
Sbjct: 196 DEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE 255

Query: 139 I-----KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                    V    A+I    + G +  AR VFD++ D+D   W  MI  Y   GF  +A
Sbjct: 256 FFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEA 315

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L+LF +M R  ++PS  + I +LS CA    +  GR+    +      +  V     ++ 
Sbjct: 316 LELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLV-RCQFDGDVYVASVLMT 374

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK----IAEYLISQNLA 309
           +  + G++ +A KLV D     D ++W +++     HG   LGE+      E  +S  + 
Sbjct: 375 MYVKCGELVKA-KLVFDRFPSKDIIMWNSIISGYASHG---LGEEALKVFHEMPLSGTMP 430

Query: 310 NSGTYVLL 317
           N  T + +
Sbjct: 431 NKVTLIAI 438



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           I+  S+ G + +AR  FD +  K +  WNS++ GY  +G  ++A Q+F+EM    +    
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI---- 79

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           +++ GL+S      ++ E R  F  M      E  V  +  MV    + G V EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEIMP-----ERNVVSWTAMVKGYVQEGMVVEAELLFW 134

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            M  E + V W  + G     G I    K+ + +  +++  S   +
Sbjct: 135 RMP-ERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMI 179


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/476 (43%), Positives = 309/476 (64%), Gaps = 5/476 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKL--FATMP--QRSLVSLTTMLTCYAKQGEVAAARVLF 64
           D +  +S++ ++A G DV    +L  FAT       +   ++++  YA       +  +F
Sbjct: 172 DSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVF 231

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D++  +D + WN M+ G AQ+G  +EAL LFRRML   ++P  VT  +++ ACG + +L 
Sbjct: 232 DNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLL 291

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G+ +H+Y+        NV + ++LI+MY KCG++  AR +FDR+   D+V W +MI+G+
Sbjct: 292 LGKQLHAYVIRG-GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGH 350

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A+HG  ++AL LF+ M    LKP+ ITF+ +L+AC+HAGLV++G ++FN+M D Y I P 
Sbjct: 351 ALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPS 410

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +EH+  + + L R G++EEAY  +  MKI+P + +W TLL AC++H N  L E++A+ + 
Sbjct: 411 LEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIF 470

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                + G++++LSN Y++ G W+  A +R  M++KG+QKEP CS IE+ NK H F+A D
Sbjct: 471 DLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHD 530

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP  + I   L   +  +  +GYVP T  V  DI E+QK + L  HSEKLA+ FG+IS
Sbjct: 531 KSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIIS 590

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T PGT+I+++KNLRVC DCH V K ISK  GR+I+MRD NRFHHF +G CSCGD+W
Sbjct: 591 TPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 5/234 (2%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           + R +FD+M EKDVV WN ++ G A+ G   EAL L R M  +  +P+  T  +VL    
Sbjct: 125 SVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFA 184

Query: 119 QIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           +   +  G  +H +   +RN    +V VG++LI+MY+ C     +  VFD +  +D ++W
Sbjct: 185 EGADVRRGMELHGFA--TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILW 242

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           NSM+ G A +G   +AL LF  M    +KP  +TF  L+ AC +   +  G++  +    
Sbjct: 243 NSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ-LHAYVI 301

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
               +  V     ++++  + G V  A + + D    PD V W  ++    LHG
Sbjct: 302 RGGFDGNVFISSSLIDMYCKCGNVSIARR-IFDRIQSPDIVSWTAMIMGHALHG 354



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 115/277 (41%), Gaps = 37/277 (13%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV------LSACGQIGALESGRW 128
           W   I   A  G  + A+ LF RM A   +P    +  +      L +C  +G    G  
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRAS--DPAAACSSVLTSLPGALKSCAALGLRALGAS 79

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGS--------------LKDARLVFDRVNDKDV 174
           +H+    S     +     AL+N+Y K  +              L+  R VFD + +KDV
Sbjct: 80  LHALALRSGAF-ADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV 138

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V WN++++G A  G   +AL L  EM R   KP   T   +L   A    V  G    + 
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGME-LHG 197

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI- 293
                     V     ++++ +   + + + K+  ++ +  D++LW ++L  C  +G++ 
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNGSVD 256

Query: 294 -ALGEKIAEYLISQNLANSGTY---VLLSNIYAAIGN 326
            ALG       + + + +SG     V  S++  A GN
Sbjct: 257 EALG-------LFRRMLHSGIKPMPVTFSSLIPACGN 286



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   D ++++S+SL+D+Y + G+V  A ++F  +    +VS T M+  +A  G    A 
Sbjct: 301 IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREAL 360

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           VLFD ME                  L N             ++PN +T +AVL+AC   G
Sbjct: 361 VLFDRME------------------LGN-------------LKPNHITFLAVLTACSHAG 389

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNSM 180
            ++ G    + + +   I  +++   AL +   + G L++A      +  K    VW+++
Sbjct: 390 LVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTL 449

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 450 LRACKVH 456


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/445 (44%), Positives = 288/445 (64%), Gaps = 5/445 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           L+    ++  Y+K     AAR +FD +   E++VV W VMI GYAQ+G +N+AL +F  M
Sbjct: 442 LMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEM 501

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSK 155
           +++   V PN  T   +L AC  + AL  G+ IH+Y+      + +V  V   LI+MYSK
Sbjct: 502 ISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSK 561

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  AR VFD +  ++ V W SM+ GY MHG GK+AL +F++M +    P DI+F+ L
Sbjct: 562 CGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVL 621

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+H+G+V++G  +F+ M+ +Y +    EHY C+++LL+R G++++A+K + +M +EP
Sbjct: 622 LYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEP 681

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            +V+W  LL ACR+H N+ L E     L++    N G+Y L+SNIYA    W  VAR+R 
Sbjct: 682 SAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQ 741

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMK+ G++K PGCS ++       F  GD  HP S EIY +LE + G +K  GYVP+T  
Sbjct: 742 LMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNF 801

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+ +++K N L  HSEKLA+A+GL++T PG  I+I KNLRVC DCH+ F  ISK   
Sbjct: 802 ALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVD 861

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I++RD +RFHHF NG+CSCG YW
Sbjct: 862 HEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 164/303 (54%), Gaps = 21/303 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V  +L+D YA+ G +  A K+F  M  + +VS   M+T Y + G   AA  LF++M 
Sbjct: 293 DAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMR 352

Query: 69  EK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++    DV+ W+ +I GYAQ G + EAL  F++M+ +  EPN VT +++LSAC  +GAL 
Sbjct: 353 KENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALS 412

Query: 125 SGRWIHSY-----------IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--ND 171
            G  IH+Y                    ++ V  ALI+MYSKC S K AR +FD +   +
Sbjct: 413 QGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRE 472

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGR 229
           ++VV W  MI GYA +G   DAL++F+EM      + P+  T   +L ACAH   +  G+
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGK 532

Query: 230 RFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
           +    +   +  EP V     C++++ S+ G V+ A + V D   + + V W +++    
Sbjct: 533 QIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTA-RNVFDSMPKRNEVSWTSMMSGYG 591

Query: 289 LHG 291
           +HG
Sbjct: 592 MHG 594



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 135/297 (45%), Gaps = 32/297 (10%)

Query: 33  FATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
            A +P  S VS     T ++  Y   G    A  + + +     V WN+++  + + G  
Sbjct: 71  LAPLPSHSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHL 130

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           + A+ +  RML    +P+  T    L ACG++ +   GR +H  I      + NV V  A
Sbjct: 131 DRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLI-CCNGFESNVFVCNA 189

Query: 149 LINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-- 203
           L+ MYS+CGSL+DA LVFD +  K   DV+ WNS++  +      + AL+LF+EM  I  
Sbjct: 190 LVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVH 249

Query: 204 ----RLKPSDITFIGLLSACAHAGLVNEGRRFFN------TMKDEYAIEPKVEHYGCMVN 253
                 +   I+ + +L ACA    + + +   +      T  D +     ++ Y     
Sbjct: 250 EKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTY----- 304

Query: 254 LLSRAGQVEEAYKL--VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++ G + +A K+  VM+ K   D V W  ++      GN     ++ E +  +N+
Sbjct: 305 --AKCGSMNDAVKVFNVMEFK---DVVSWNAMVTGYTQSGNFGAAFELFENMRKENI 356



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 122/273 (44%), Gaps = 45/273 (16%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRM--LA 100
            ++  Y++ G +  A ++FD++  K   DV+ WN ++  + +      AL LF  M  + 
Sbjct: 189 ALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIV 248

Query: 101 EKVEPNE----VTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSK 155
            +   NE    ++ V +L AC  + AL   + IHSY I N      +  V  ALI+ Y+K
Sbjct: 249 HEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRN--GTFADAFVCNALIDTYAK 306

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CGS+ DA  VF+ +  KDVV WN+M+ GY   G    A +LF  M +  +    IT+  +
Sbjct: 307 CGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAV 366

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           ++  A  G   E    F  M                                ++D   EP
Sbjct: 367 IAGYAQRGCSQEALDAFQQM--------------------------------ILDGS-EP 393

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           +SV   +LL AC   G ++ G +I  Y + + L
Sbjct: 394 NSVTIISLLSACASLGALSQGMEIHAYSLKKCL 426


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 305/480 (63%), Gaps = 33/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK+    D+YV ++L+D+YAR                           C    G +  A
Sbjct: 191 TVKYDWHDDVYVGSALLDMYAR---------------------------C----GRMDMA 219

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +FD +E K+ V WN +I G+A+ G     L++F  M     E    T  +V SA   I
Sbjct: 220 IAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGI 279

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE G+W+H+++  S   +++  VG  +++MY+K GS+ DAR VFDRV+ KDVV WNSM
Sbjct: 280 GALEQGKWVHAHMIKSGE-RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSM 338

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +  +A +G G++A+  F EM +  +  + ITF+ +L+AC+H GLV EG+++F+ MK EY 
Sbjct: 339 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYN 397

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP+++HY  +V+LL RAG + +A   +  M ++P + +WG LLG+CR+H N  +G+  A
Sbjct: 398 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAA 457

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           +++   +  ++G  VLL NIYA+ G WD  ARVR +MK  GV+KEP CS +E+ N VH F
Sbjct: 458 DHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 517

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HP+S+EIY   EEI+  ++  GYVP T  VL  + E+++Q  L+ HSEK+A+AF
Sbjct: 518 VANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAF 577

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI+   G +I+I+KN+R+C DCH+ F+ ISK   R+I++RD NRFHHF +G+CSCGDYW
Sbjct: 578 ALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 134/247 (54%), Gaps = 5/247 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G VA AR +FD M  +D+  W  +I GYAQ+ + +EAL L   ML  + +P
Sbjct: 104 SLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKP 163

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T  ++L A G   +   G  IH+ +    +   +V VG+AL++MY++CG +  A  V
Sbjct: 164 NGFTFASLLKAAGASASSGIGEQIHA-LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD++  K+ V WN++I G+A  G G+  L +F EM R   + +  T+  + SA A  G +
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 226 NEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G+     M K    +   V +   ++++ +++G + +A K V D   + D V W ++L
Sbjct: 283 EQGKWVHAHMIKSGERLSAFVGN--TILDMYAKSGSMIDARK-VFDRVDKKDVVTWNSML 339

Query: 285 GACRLHG 291
            A   +G
Sbjct: 340 TAFAQYG 346



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 12/231 (5%)

Query: 101 EKVEPNEVTAV-----AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           + V+  E+ A      ++++AC +  +L+  R IH+++  S+    +V +  +LI++Y K
Sbjct: 53  DSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQ-FAGSVFLDNSLIHLYCK 111

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG++ DAR VFD +  +D+  W S+I GYA +    +AL L   M R R KP+  TF  L
Sbjct: 112 CGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASL 171

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L A   +     G +  + +  +Y     V     ++++ +R G+++ A   V D     
Sbjct: 172 LKAAGASASSGIGEQ-IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIA-VFDQLESK 229

Query: 276 DSVLWGTLLGACRLHGNIALGE-KIAEYLISQNLANSGTYVLLSNIYAAIG 325
           + V W  L+      G+   GE  +  +   Q      T+   S++++AI 
Sbjct: 230 NGVSWNALIAGFARKGD---GETTLLMFAEMQRNGFEATHFTYSSVFSAIA 277


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/475 (45%), Positives = 302/475 (63%), Gaps = 8/475 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           ++L V+  LV  Y+    +  A  LF  M  R  VS + M+  +AK G+       F   
Sbjct: 393 QNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTF--- 449

Query: 68  EEKDVVCWNVMIDGYAQH--GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
             ++++      D Y     G ANE+LVLF +M  E V P++V  V V+ AC ++GA+  
Sbjct: 450 --RELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHK 507

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
            R I  YI+  +  +++V +GTA+I+M++KCG ++ AR +FDR+ +K+V+ W++MI  Y 
Sbjct: 508 ARTIDDYIQR-KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 566

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
            HG G+ AL LF  M R  + P+ IT + LL AC+HAGLV EG RFF+ M ++Y++   V
Sbjct: 567 YHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADV 626

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           +HY C+V+LL RAG+++EA KL+  M +E D  LWG  LGACR H ++ L EK A  L+ 
Sbjct: 627 KHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLE 686

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               N G Y+LLSNIYA  G W+ VA+ R LM ++ ++K PG + IE+ NK H+F  GD 
Sbjct: 687 LQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDT 746

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP+SKEIY ML+ +   L+  GYVP T  VLHD+ E+ K   L  HSEKLA+AFGLI+T
Sbjct: 747 THPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIAT 806

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              T I+I+KNLRVC DCH   KL+S  TGR I++RD NRFHHF  G CSCGDYW
Sbjct: 807 PEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 145/260 (55%), Gaps = 14/260 (5%)

Query: 33  FATMPQRSLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           F     R L +L   L   Y K  E+  AR LFD M+E+D+V W VMI GYA+ G ANE+
Sbjct: 184 FVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 243

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           LVLF +M  E V P++V  V V+ AC ++GA+   R I  YI+  +  +++V +GTA+I+
Sbjct: 244 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR-KKFQLDVILGTAMID 302

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY+KCG ++ AR +FDR+ +K+V+ W++MI  Y  HG G+ AL LF  M    + P  IT
Sbjct: 303 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 362

Query: 212 FIGLLSACAHAGLVNEGRRF-----FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
              LL AC +   + + R+       + M     +  K+ H+       S    +++AY 
Sbjct: 363 LASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHF------YSYYRALDDAYG 416

Query: 267 LVMDMKIEPDSVLWGTLLGA 286
           L   M +  DSV W  ++G 
Sbjct: 417 LFDGMCVR-DSVSWSVMVGG 435



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 43/289 (14%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  ++  T M+  YAK G V +AR +FD MEEK+V+ W+ MI  Y  HG   +AL LFR 
Sbjct: 291 QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRM 350

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML+  + P+++T  ++L AC     L   R +H+   +   +  N+ V   L++ YS   
Sbjct: 351 MLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQ-ASVHGMLQNLIVANKLVHFYSYYR 409

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +L DA  +FD +  +D V W+ M+ G+A  G   +    F E+ R   +P + T    L 
Sbjct: 410 ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYT----LP 465

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEH----YGC----------------------- 250
            C +A   NE    F+ M++E  +  KV      + C                       
Sbjct: 466 FCGNA---NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL 522

Query: 251 -------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
                  M+++ ++ G VE A + + D   E + + W  ++ A   HG 
Sbjct: 523 DVILGTAMIDMHAKCGCVESA-REIFDRMEEKNVISWSAMIAAYGYHGQ 570



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 143/308 (46%), Gaps = 34/308 (11%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++V    ++  Y+    +  A  LFD M  +D V W+VM+ G+A+ G        FR ++
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 171

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
                P+  T   V+ AC                   R++K N+Q+  AL++MY KC  +
Sbjct: 172 RCGARPDNYTLPFVIRAC-------------------RDLK-NLQM--ALVDMYVKCREI 209

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           +DAR +FD++ ++D+V W  MI GYA  G   ++L LF +M    + P  +  + ++ AC
Sbjct: 210 EDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 269

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           A  G +++ R     + D+Y    K +        M+++ ++ G VE A + + D   E 
Sbjct: 270 AKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESA-REIFDRMEEK 323

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           + + W  ++ A   HG       +   ++S  +       L S +YA I N   + +VR 
Sbjct: 324 NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKI-TLASLLYACI-NCRNLTQVRQ 381

Query: 336 LMKEKGVQ 343
           +  +  V 
Sbjct: 382 VHAQASVH 389


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/445 (46%), Positives = 286/445 (64%), Gaps = 4/445 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R  +  T+++ CYA +G+   AR LF +M  +D V WNV+I   A++    +AL LF  M
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
                  EP++VT + +L AC  +GAL+ G  + +Y E        ++V  +LI MYS+C
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEE-HGYGAKLKVRNSLIAMYSRC 270

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G +  A  VF     K VV W++MI G A +GFG DA+  F EM R  + P + TF G+L
Sbjct: 271 GCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVL 330

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM-DMKIEP 275
           SAC+H+GLV+EG RFF+ M+ EY ++P V HYGC+V+L+ RAG ++EAY+LV  +MK+ P
Sbjct: 331 SACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAP 390

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D+ +W TLLGACR+HG++ LGE++   LI      +G YVLL N YAA+G W  V+ VR 
Sbjct: 391 DATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRK 450

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LM+EKG+Q  PGC+++E + +V+EF+A D  HP+  EIY  L EIN  L+  GYVP    
Sbjct: 451 LMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVSS 510

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+  + K+++L  HSEKLA+AF L+ T     I++ KNLRVC DCH   K+ S    
Sbjct: 511 ELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIYN 570

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R +++RDR RFHHF  G CSC DYW
Sbjct: 571 RLVIVRDRTRFHHFQGGKCSCNDYW 595



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 33/181 (18%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L V  SL+ +Y+R G V  A ++F   PQ+S+V+                          
Sbjct: 257 LKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVT-------------------------- 290

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                W+ MI G A +G  ++A+  F  M+   V P+E T   VLSAC   G ++ G   
Sbjct: 291 -----WSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRF 345

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVN-DKDVVVWNSMIVGYAMH 187
              +     +K NV+    ++++  + G L +A  LV + +    D  +W +++    +H
Sbjct: 346 FDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIH 405

Query: 188 G 188
           G
Sbjct: 406 G 406


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/467 (44%), Positives = 296/467 (63%), Gaps = 1/467 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++++  Y   GD+ +AE+L+  +  +S+V  T MLT Y K G+V  A  +F  M  K++V
Sbjct: 202 SAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLV 261

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN MI GY ++  A + L +F+ M+  +V PN ++  +VL  C  + AL  GR +H  +
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             S  +  +    T+LI+MY KCG L  A  +F  +  KDV+ WN+MI GYA HG G+ A
Sbjct: 322 SKS-PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKA 380

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L LF++M    +KP  ITF+ ++ AC HAG V+ G ++F +MK E+ IE K  HY C+++
Sbjct: 381 LHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVID 440

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG+++EA  L+ +M   P + ++GTLLGACR+H N+ L E  A  L++ +  ++  
Sbjct: 441 LLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG 500

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YV L+NIYAA   WD VA+VR +MKE  V K PG S IE+ +  HEF + D  HP+   I
Sbjct: 501 YVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSI 560

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKI 433
           +  L E++G +K  GYVP  +  LHD+ E+ K+  L  HSEKLA+AFGL+ T PGT I++
Sbjct: 561 HKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRV 620

Query: 434 VKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            KNLRVC DCH   K IS    R+I++RD  RFHHF NG CSCGDYW
Sbjct: 621 FKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 168/349 (48%), Gaps = 19/349 (5%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K S+   +  +T L       G V  A +LF  +P+   VS   ML CY +   V AA  
Sbjct: 98  KMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALA 157

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F+ M  KD+  WN +I G+AQ+G   +A  LF  M     E N V+  A++S   + G 
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKNGVSWSAMISGYVEHGD 213

Query: 123 LESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           LE+        E  +N+ + +V V TA++  Y K G ++ A  +F R+  K++V WNSMI
Sbjct: 214 LEAAE------ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY  +   +D L++F  M   R++P+ ++   +L  C++   +  GR+  + +  +  +
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPL 326

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG----NIALGE 297
                    ++++  + G ++ A+KL ++M    D + W  ++     HG     + L +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNAMISGYAQHGAGRKALHLFD 385

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           K+    +  +       +L  N +A   +  GV   +++ KE G++ +P
Sbjct: 386 KMRNGTMKPDWITFVAVILACN-HAGFVDL-GVQYFKSMKKEFGIEAKP 432


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/445 (44%), Positives = 288/445 (64%), Gaps = 5/445 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           LV    ++  Y+K     AAR +F+ +   E++VV W VMI GYAQ+G +N+AL LF  M
Sbjct: 442 LVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEM 501

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSK 155
           +++   V PN  T   +L AC  + +L  G+ IH+Y+      + +V  V   LI+MYSK
Sbjct: 502 ISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSK 561

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  AR VFD +  ++ V W SM+ GY MHG GK+AL +F++M +    P DI+F+ L
Sbjct: 562 CGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVL 621

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+H+G+V++G  +F+ M+ +Y +    +HY C+++LL+R+G++++A+K + +M +EP
Sbjct: 622 LYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEP 681

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            + +W  LL ACR+H N+ L E     L+S    N G+Y L+SNIYA    W  VAR+R 
Sbjct: 682 SAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQ 741

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LMK+ G++K PGCS ++       F  GD  HP S EIY +LE + G +K  GYVP+T  
Sbjct: 742 LMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNF 801

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+ +++K N L  HSEKLA+A+GL++T PG  I+I KNLRVC DCH+ F  ISK   
Sbjct: 802 ALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVD 861

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I++RD +RFHHF NG+CSCG YW
Sbjct: 862 HEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 159/303 (52%), Gaps = 21/303 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V  +L+D YA+ G +  A  +F  M  + +VS   M+T Y + G+  AA  LF +M 
Sbjct: 293 DAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMR 352

Query: 69  EK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           ++    DV+ W+ +I GYAQ G   EAL  F++M+    EPN VT +++LSAC  +GAL 
Sbjct: 353 KENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALS 412

Query: 125 SGRWIHSY-----------IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--ND 171
            G   H+Y                    ++ V  ALI+MYSKC S K AR +F+ +   +
Sbjct: 413 QGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRE 472

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGR 229
           ++VV W  MI GYA +G   DAL+LF+EM      + P+  T   +L ACAH   +  G+
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGK 532

Query: 230 RFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
           +    +   +  E  V     C++++ S+ G V+ A + V D   + + V W +++    
Sbjct: 533 QIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTA-RNVFDSMPKRNEVSWTSMMSGYG 591

Query: 289 LHG 291
           +HG
Sbjct: 592 MHG 594



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 50/338 (14%)

Query: 36  MPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +P  S VS     T ++  Y   G  + A  + + +     V WN+++  + + G  + A
Sbjct: 74  LPSHSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRA 133

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           + +  RML    +P+  T    L ACG++ +  SG   H  I      + NV V  AL+ 
Sbjct: 134 IGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLI-CCNGFESNVFVCNALVA 192

Query: 152 MYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI----- 203
           MYS+ GSL+DA LVFD +  K   DV+ WNS++  +      + AL LF+EM  I     
Sbjct: 193 MYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKA 252

Query: 204 -RLKPSDITFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYA------- 240
              +   I+ + +L ACA    + + +                  N + D YA       
Sbjct: 253 TNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKD 312

Query: 241 -------IEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLG--AC 287
                  +E K V  +  MV   +++G+   A++L  +M+   I  D + W  ++   A 
Sbjct: 313 AVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQ 372

Query: 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
           R +G  AL +   + ++  +  NS T + L +  A++G
Sbjct: 373 RGYGQEAL-DTFQQMILYGSEPNSVTIISLLSACASLG 409



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 121/272 (44%), Gaps = 45/272 (16%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRM--LAE 101
           ++  Y++ G +  A ++FD++  K   DV+ WN ++  + +      AL LF  M  +  
Sbjct: 190 LVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVH 249

Query: 102 KVEPNE----VTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKC 156
           +   NE    ++ V +L AC  + AL   + IHSY I N      +  V  ALI+ Y+KC
Sbjct: 250 EKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRN--GTFADAFVCNALIDTYAKC 307

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           GS+KDA  VF+ +  KDVV WN+M+ GY   G    A +LF  M +  +    IT+  ++
Sbjct: 308 GSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVI 367

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +  A  G   E    F  M            YG                        EP+
Sbjct: 368 AGYAQRGYGQEALDTFQQMI----------LYGS-----------------------EPN 394

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           SV   +LL AC   G ++ G +   Y + + L
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCL 426



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 32/178 (17%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +V+  L+D+Y++ GDV +A  +F +MP+R+ VS T+M++ Y                   
Sbjct: 550 FVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY------------------- 590

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                         HG   EAL +F +M      P++++ + +L AC   G ++ G    
Sbjct: 591 ------------GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYF 638

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
             + +   +  + Q    +I++ ++ G L  A + + +   +    +W +++    +H
Sbjct: 639 DIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVH 696


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/443 (44%), Positives = 296/443 (66%), Gaps = 4/443 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R++  + ++++ Y K  EV  A  +F  ++ + +V WN MI G+AQ+G   EAL  F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM 429

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCG 157
            A  V+P+  T V+V++A  ++      +WIH  +   RN +  NV V TAL++MY+KCG
Sbjct: 430 QARTVKPDTFTYVSVITAIAELSITHHAKWIHGVV--MRNCLDKNVFVTTALVDMYAKCG 487

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++  ARL+FD ++++ V  WN+MI GY  HG GK AL+LF EM +  ++P+ +TF+ ++S
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVIS 547

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+H+GLV  G + F+ MK+ Y+IEP ++HYG MV+LL RAG++ EA+  +M M ++P  
Sbjct: 548 ACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            ++G +LGAC++H N+   EK+AE L   N  + G +VLL+NIY A   W+ V +VR  M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
             +G++K PGCS +E+ N+VH F +G   HP SK+IY  LE++   +K  GYVP T ++L
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL 727

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
             + +  K+  L  HSEKLA++FGL++T  GT+I + KNLRVC DCH   K IS  TGR+
Sbjct: 728 -GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD  RFHHF NG CSCGDYW
Sbjct: 787 IIVRDMQRFHHFKNGACSCGDYW 809



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 140/253 (55%), Gaps = 4/253 (1%)

Query: 40  SLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV++ T L   YAK G +  AR+LFD M E++VV WN MID Y Q+    EA+V+F++M
Sbjct: 269 SLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKM 328

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L E V+P +V+ +  L AC  +G LE GR+IH  +     +  NV V  +LI+MY KC  
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHK-LSVELELDRNVSVVNSLISMYCKCKE 387

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  A  +F ++  + +V WN+MI+G+A +G   +AL  F++M    +KP   T++ +++A
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            A   + +  +     +     ++  V     +V++ ++ G +  A +L+ DM  E    
Sbjct: 448 IAELSITHHAKWIHGVVMRN-CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVT 505

Query: 279 LWGTLLGACRLHG 291
            W  ++     HG
Sbjct: 506 TWNAMIDGYGTHG 518



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L ++T +   YAK  +V  AR +FD M E+D+V WN ++ GY+Q+G+A  AL +   M  
Sbjct: 170 LFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCE 229

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E ++P+ +T V+VL A   +  +  G+ IH Y   +      V + TAL++MY+KCGSLK
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA-GFDSLVNIATALVDMYAKCGSLK 288

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            ARL+FD + +++VV WNSMI  Y  +   K+A+ +F +M    +KP+D++ +G L ACA
Sbjct: 289 TARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             G +  G RF + +  E  ++  V     ++++  +  +V+ A
Sbjct: 349 DLGDLERG-RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 133/243 (54%), Gaps = 5/243 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ + + G V  A  +F+ +++K  V +  M+ G+A+    ++AL  F RM  ++VE
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVE 132

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P       +L  CG    L  G+ IH  +  S    +++   T L NMY+KC  + +AR 
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GFSLDLFAMTGLENMYAKCRQVHEARK 191

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+ ++D+V WN+++ GY+ +G  + AL++ N MC   LKPS IT + +L A +   L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRL 251

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  G+      M+  +  +  V     +V++ ++ G ++ A +L+ D  +E + V W ++
Sbjct: 252 IRIGKEIHGYAMRAGF--DSLVNIATALVDMYAKCGSLKTA-RLLFDGMLERNVVSWNSM 308

Query: 284 LGA 286
           + A
Sbjct: 309 IDA 311



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 31/157 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LDK+++V+T+LVD+YA+ G ++ A  +F  M +R + +   M+  Y   G   AA  LF+
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFE 528

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
           +M++                                 + PN VT ++V+SAC   G +E+
Sbjct: 529 EMQKG-------------------------------TIRPNGVTFLSVISACSHSGLVEA 557

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           G      ++ + +I+ ++    A++++  + G L +A
Sbjct: 558 GLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEA 594



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           T L++++ + GS+ +A  VF+ ++ K  V++ +M+ G+A       AL+ F  M    ++
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVE 132

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           P    F  LL  C     +  G+     + K  ++++  +     + N+ ++  QV EA 
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD--LFAMTGLENMYAKCRQVHEAR 190

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           K V D   E D V W T++     +G   +  ++   +  +NL  S  ++ + ++  A+
Sbjct: 191 K-VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPS--FITIVSVLPAV 246


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/467 (44%), Positives = 297/467 (63%), Gaps = 1/467 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++++  Y   GD+ +AE+L+  +  +S+V  T MLT Y K G+V  A  +F  M  K++V
Sbjct: 202 SAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLV 261

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN MI GY ++  A + L +F+ M+  +V PN ++  +VL  C  + AL  GR +H  +
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             S  +  +    T+LI+MY KCG L  A  +F  +  KDV+ WN+MI GYA HG G+ A
Sbjct: 322 SKS-PLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKA 380

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L LF++M    +KP  ITF+ ++ AC HAG V+ G ++F +MK E+ IE K  HY C+++
Sbjct: 381 LHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVID 440

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RAG+++EA  L+ +M  +P + ++GTLLGACR+H N+ L E  A  L++ +  ++  
Sbjct: 441 LLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATG 500

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YV L+NIYAA   WD VA+VR +MKE  V K PG S IE+ +  HEF + D  HP+   I
Sbjct: 501 YVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSI 560

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKI 433
           +  L E++G +K  GYVP  +  LHD+ E+ K+  L  HSEKLA+AFGL+ T PGT I++
Sbjct: 561 HKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRV 620

Query: 434 VKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            KNLRVC DCH   K IS    R+I++RD  RFHHF NG CSCGDYW
Sbjct: 621 FKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 19/349 (5%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K S+   +  +T L       G V  A +LF  +P+   VS   ML CY +   V AA  
Sbjct: 98  KMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALA 157

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F+ M  KD+  WN +I G+AQ+G   +A  LF  M     E N V+  A++S   + G 
Sbjct: 158 FFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVM----PEKNGVSWSAMISGYVEHGD 213

Query: 123 LESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           LE+   ++      +N+ + +V V TA++  Y K G ++ A  +F R+  K++V WNSMI
Sbjct: 214 LEAAEELY------KNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMI 267

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY  +   +D L++F  M   R++P+ ++   +L  C++   +  GR+  + +  +  +
Sbjct: 268 AGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ-MHQLVSKSPL 326

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG----NIALGE 297
                    ++++  + G ++ A+KL ++M    D + W  ++     HG     + L +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNAMISGYAQHGAGRKALHLFD 385

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           K+    +  +       +L  N +A   +  GV   +++ KE G++ +P
Sbjct: 386 KMRNGTMKPDWITFVAVILACN-HAGFVDL-GVQYFKSMKKEFGIEAKP 432


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/472 (44%), Positives = 301/472 (63%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +  +L+  YA+ G V +A ++   A +   +++S T +L  Y K G+   AR +FD M  
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNN 576

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DV+ W  MI GY Q+G  +EA+ LFR M+    EPN  T  AVLSAC  +  L+ G+ I
Sbjct: 577 RDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQI 636

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S   + +V V  A+I +Y++ GS+  AR VFD++   K+ + W SMIV  A HG
Sbjct: 637 HCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G+ A+ LF EM R+ +KP  IT++G+LSACAHAG V++G+R++  M++E+ I P++ HY
Sbjct: 696 LGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHY 755

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+L +RAG + EA++ +  M + PD+V+WG+LL ACR+  N  L E  A  L+S + 
Sbjct: 756 ACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDP 815

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  L+N+Y+A G W+  AR+  L K+KGV+KE G S   +  KVH F A D+ HP
Sbjct: 816 HNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHP 875

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   IY    E+   +K  G+VP    VLHD+ ++ K+  L  HSEKLA+AFGLIST   
Sbjct: 876 QRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 935

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH   K ISKF  R+I++RD  RFHHF +G CSC DYW
Sbjct: 936 TTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 166/330 (50%), Gaps = 37/330 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   + V+ S++ +Y + GD  +A  +F  M  RS+ S   M++ Y  QG +  A 
Sbjct: 374 VKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAV 433

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQI 120
            +F++M E+ +V WN +I GY Q+GL   AL  F RML A  +EP+  T  +VLSAC  +
Sbjct: 434 SMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANL 493

Query: 121 GALESGRWIHSYI-------------------------ENSRNI-------KVNVQVGTA 148
             L+ G+ +HSYI                         E +R I        +NV   TA
Sbjct: 494 RMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTA 553

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+  Y K G  K AR +FD +N++DV+ W +MIVGY  +G   +A++LF  M  I  +P+
Sbjct: 554 LLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPN 613

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             T   +LSACA    ++ G++  +        E  V     ++ + +R+G V  A ++ 
Sbjct: 614 SHTLAAVLSACASLAYLDYGKQ-IHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVF 672

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
             +    +++ W +++ A   HG   LGE+
Sbjct: 673 DQICWRKETITWTSMIVAMAQHG---LGEQ 699



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 46/335 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR----GGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQG 55
           VK  L    Y+  +L+  YA      G    A  LF  +P  +R+  +  ++L+ YAK G
Sbjct: 236 VKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSG 295

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
            +  A V+F +M ++D V W +MI G  + G   +A+  F  M++E   P++ T   VLS
Sbjct: 296 RLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLS 355

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN----- 170
           +C  + A   GR +H ++     +   V V  +++ MY KCG  + AR VF+R+      
Sbjct: 356 SCAAMEACGVGRKVHPFVVK-LGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVS 414

Query: 171 --------------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI- 203
                                     ++ +V WN++I GY  +G    AL+ F+ M    
Sbjct: 415 SWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSAS 474

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            ++P   T   +LSACA+  ++  G++  + +     +    +    +++  +++G VE 
Sbjct: 475 SMEPDAFTVTSVLSACANLRMLKMGKQMHSYIL-RTGMPCSSQIMNALISTYAKSGSVET 533

Query: 264 AYKLVMDMKIEPD-SVLWGTLLGACRLHGNIALGE 297
           A + +MD  +  D +V+  T L    L G + LG+
Sbjct: 534 ARR-IMDQAVVADLNVISFTAL----LEGYVKLGD 563


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/434 (47%), Positives = 284/434 (65%), Gaps = 4/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +LT Y + G V  AR LFD M EK ++ WN MI GYAQ+GLA   L L+R+M    + P+
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPD 259

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT V VLS+C  +GA  +GR +   IE S     N  +  ALINMY++CG+L  AR +F
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELS-GFGFNPFLKNALINMYARCGNLVKARAIF 318

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + +K+V+ W ++I GY MHG G+ A+QLF+EM      P    F+ +LSAC+HAGL  
Sbjct: 319 DGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTE 378

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G  +F  M+ +Y ++P  EHY C+V+LL RAG++EEA KL+  M +EPD  +WG LLGA
Sbjct: 379 KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGA 438

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C++H N+ L E   E +I     N G YVLLSNI++  GN +G+ RVR +M+E+ ++KEP
Sbjct: 439 CKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEP 498

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           GCS +E   ++H FLAGD  HP+++EIY ML+ +   +K  G          +   ++  
Sbjct: 499 GCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDND---QESRNEELI 555

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             + VHSEKLA+AFGLI+T+PGT I ++KNLRVC DCH   KL+S+   R++++RD  RF
Sbjct: 556 TGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRF 615

Query: 467 HHFVNGTCSCGDYW 480
           HHF NG CSC DYW
Sbjct: 616 HHFKNGVCSCKDYW 629



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T++++ Y K   +A+AR +FD+        VC+N +I GY+ +   ++A++LFR+M  E 
Sbjct: 95  TSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEG 154

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V  N VT + ++  C     L  G  +H+       +  ++ VG  L+ MY +CGS+  A
Sbjct: 155 VSVNAVTMLGLIPVCAGPIHLGFGTSLHA-CSVRFGLDGDLSVGNCLLTMYVRCGSVDFA 213

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R +FD + +K ++ WN+MI GYA +G     L L+ +M    + P  +T +G+LS+CAH 
Sbjct: 214 RKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHL 273

Query: 223 GLVNEGRRFFNTMK-DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           G    GR     ++   +   P +++   ++N+ +R G + +A + + D   E + + W 
Sbjct: 274 GAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKA-RAIFDGMTEKNVISWT 330

Query: 282 TLLGACRLHGNIALGEKIAEYLISQN-LANSGTYV-LLSNIYAAIGNWDGVARVRTLMKE 339
            ++    +HG   L  ++ + +IS + L +   +V +LS    A     G+     + ++
Sbjct: 331 AIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERD 390

Query: 340 KGVQKEP 346
            G+Q  P
Sbjct: 391 YGLQPGP 397



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 130/316 (41%), Gaps = 49/316 (15%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +     WN  +   A+     EAL L+ +MLA    PN  T      +C  +    +G  
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 129 IHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKD--VVVWNSMIV 182
           +H ++     IK   +    V T+LI+MY KC ++  AR VFD  +      V +N++I 
Sbjct: 78  LHGHV-----IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIA 132

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------HA--------- 222
           GY+++    DA+ LF +M +  +  + +T +GL+  CA           HA         
Sbjct: 133 GYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDG 192

Query: 223 ---------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
                          G V+  R+ F+ M ++  I       G   N L  AG V + Y+ 
Sbjct: 193 DLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGL--AGHVLDLYRK 250

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL-ISQNLANSGTYVLLSNIYAAIGN 326
           +    I PD V    +L +C   G  A G ++ + + +S    N      L N+YA  GN
Sbjct: 251 MEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGN 310

Query: 327 WDGVARVRTLMKEKGV 342
                 +   M EK V
Sbjct: 311 LVKARAIFDGMTEKNV 326


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/369 (52%), Positives = 262/369 (71%), Gaps = 1/369 (0%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            +L AC  + ALE G+ +H+ I      +++V V   L++MY KCG ++DA+ VF ++ +
Sbjct: 3   GILRACASVAALEQGKQVHADIIKI-GFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLE 61

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            DV  WN+MI G A HG GK+A+ LF +M +  +KP+ ITF+ +LS C+HAGLV+EGR +
Sbjct: 62  PDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNY 121

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           F++M  ++ I PK EHY CMV+L  RAG ++EA   +  M +EP++ +WG+LLGACR+HG
Sbjct: 122 FDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHG 181

Query: 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI 351
           NI L E+  E LI     N GTYVLLSNIYAA G WD   +VR +MK++ V+KEPGCS I
Sbjct: 182 NIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWI 241

Query: 352 ELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEV 411
           E+ NKVH F+ GD  HP+ +EIY  LE +   +KA GY+P T  VLHD+ E+QK+  L  
Sbjct: 242 EVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGH 301

Query: 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVN 471
           HSEKLA+AFG+IST PGT+I++VKNLRVC DCH   K IS+   R+I++RD +RFHHF +
Sbjct: 302 HSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKD 361

Query: 472 GTCSCGDYW 480
           G CSCGDYW
Sbjct: 362 GQCSCGDYW 370



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 4/193 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K G +  A+ +F  + E DV  WN MI G AQHG   EA++LF +ML   V+PN
Sbjct: 39  LVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPN 98

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           ++T V VLS C   G ++ GR     +     I    +  + +++++ + G L +A    
Sbjct: 99  QITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFI 158

Query: 167 DRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGL 224
           +++  + +  VW S++    +HG  + A +   ++  I L P +  T++ L +  A AG 
Sbjct: 159 NQMPVEPNASVWGSLLGACRVHGNIELAERAVEQL--IELTPENPGTYVLLSNIYAAAGR 216

Query: 225 VNEGRRFFNTMKD 237
            ++  +    MKD
Sbjct: 217 WDDAGKVRKMMKD 229


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/494 (42%), Positives = 303/494 (61%), Gaps = 21/494 (4%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +DL+V  +LVD+YA+ G V  A K+F  + ++ +VS   M+  Y++ G    A  LF+ M
Sbjct: 46  EDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKM 105

Query: 68  EEKD----VVCWNVMIDGYAQ---------------HGLANEALVLFRRMLAEK--VEPN 106
            E++    VV W+ +I  +AQ               HG AN+AL LF  M  +   V+PN
Sbjct: 106 REENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPN 165

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T    L AC ++ AL  GR IH+YI  +      + V   LI+MY+K G +  AR VF
Sbjct: 166 CFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVF 225

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  K+ V W S++ GY MHG GK+AL++F+EM R+ L+P  +T + +L AC+H+G+++
Sbjct: 226 DNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMID 285

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G  FFN+M  E+ + P  EHY CMV+LL RAG++ EA +L+  M++EP S++W  LL  
Sbjct: 286 QGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG 345

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H N+ LGE  A+ L+  N  N G+Y LLSNIYA    W  VARVR+LMK  G++K P
Sbjct: 346 CRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRP 405

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           GCS ++       F   D  HP+SK+IY +L  +   +K  GYVP+T   LHD+ +++K 
Sbjct: 406 GCSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKV 465

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           + L  HSEKLA+A+G++ + PG  I+I KNLRVC DCH     IS     +I++RD +RF
Sbjct: 466 DLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRF 525

Query: 467 HHFVNGTCSCGDYW 480
           HHF  G+CSC  YW
Sbjct: 526 HHFKKGSCSCSGYW 539



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 19/240 (7%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P+ V+ V VL AC  +GA   G+ +H     S + + ++ VG AL++MY+KCG + +A
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFE-DLFVGNALVDMYAKCGMVDEA 67

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VFDR+ +KDVV WN+M+ GY+  G  +DAL LF +M    ++ + +++  +++A A  
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL  E    F  M+   A +         + L S        +    D  ++P+      
Sbjct: 128 GLGCETLDVFREMQHGEANDA--------LELFS--------WMFKQDGLVKPNCFTISC 171

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
            L AC     + LG +I  Y++  +  ++  YV   L ++YA  G+ D    V   +K+K
Sbjct: 172 ALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQK 231


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 293/440 (66%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +VS TTM+    + G V  AR +FD M  +++V WN MI GY +     +AL +F  M A
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRA 223

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VE N   A + L AC   GAL  GR I+ ++E S  I+V+ ++ TA+++MY KCG + 
Sbjct: 224 LGVEGNGFVATSALVACTGAGALGRGREIYRWVEQS-GIEVDAKLATAVVDMYCKCGCVD 282

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A  VFD +  + +  WN MI G+A+HG   DAL+LF++M    + P D+T + +L+ACA
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           HAG V+EGRR+ N +   + IEPK EHYGCMV+L  RAGQ++EA K++ +M ++PD  + 
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGAC++HG++ LGE I   +I  +  NSG YVLL+N+ A  G WD V +VR LM E+
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            V KE G S IE+  +  EF  G+LRHP+++EIY M  ++   ++AEGYVP T   LHD+
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+ +L  HSEKLA+AFGL+  +P  +++I KNLRVC DCH   K +S+  GR+I++
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDR+RFHHF +G CSC DYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 286/445 (64%), Gaps = 4/445 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R  +  T+++ CYA +G+   AR LFD+M  +D V WNV+I  YA++    +AL LF  M
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227

Query: 99  LAE--KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
             +  + EP++VT + +L AC  +GAL+ G  + +Y E        ++V  +LI MY +C
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEE-HGYGGELKVRNSLITMYLRC 286

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G +  A  VF     K VV W +MI G A +GFG DA+ +F EM R  + P + TF G+L
Sbjct: 287 GCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVL 346

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM-DMKIEP 275
           SAC+H+GLV+EG RFF+ M+ EY ++P V HYGC+V+L+ RAG ++EAY+ V  +MK+ P
Sbjct: 347 SACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAP 406

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D+ +W TLLGACR+HG++ LGE++   LI      +G YVLL N YAA+G W  V+ +R 
Sbjct: 407 DATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRK 466

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LM+E+G+Q  PGC+++E +  VHEF+A D  HP+  EIY  L EI   L+  GYVP    
Sbjct: 467 LMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSS 526

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+  + K+++L  HSEKLA+AF L+ T     I++ KNLRVC DCH   K+ S    
Sbjct: 527 ELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYR 586

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R +++RDR RFHHF  G CSC DYW
Sbjct: 587 RIVIVRDRTRFHHFQGGKCSCNDYW 611



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 39/185 (21%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L V  SL+ +Y R G V  A ++F+  PQ+S+V+ T M                     
Sbjct: 272 ELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAM--------------------- 310

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                     I G A +G  N+A+ +F  M+   V P+E T   VLSAC   G ++ G  
Sbjct: 311 ----------ISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 360

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVG 183
               +     +K NV+    ++++  + G L +A   ++ V ++     D  +W +++  
Sbjct: 361 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA---YEFVTNEMKVAPDATIWRTLLGA 417

Query: 184 YAMHG 188
             +HG
Sbjct: 418 CRIHG 422


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 295/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ Y K G +  AR +FD M ++ VV WN MI GY Q+G A EA+ LF RM    VE
Sbjct: 150 TALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVE 209

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T V+VLSAC  +GA   G W+H Y   +  + +NV +GT+LINMY++CG++  AR 
Sbjct: 210 PNSATFVSVLSACAHLGAFILGCWVHEYAVGN-GLDLNVVLGTSLINMYTRCGNVSKARE 268

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + +++VV W +MI GY  +G+G  A++LF+EM R  L P+ ITF+ +LSACAHAGL
Sbjct: 269 VFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGL 328

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           VNEGRR F +M++EY + P+VEH+ C+V++L RAG ++EAY  + ++  EP   +W  +L
Sbjct: 329 VNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAML 388

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC++H N  LG ++AE+ ++    N   YV+LSNIYA  G  D V  VR  M  K ++K
Sbjct: 389 GACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKK 448

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           + G S+I+L  K + F  GD  H ++ EIY  L+++    +  GYV  +  V+H++ E++
Sbjct: 449 QVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEE 508

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L  HSEKLA+AFGL+ T  GT I+IVKNLR+C DCH+  K IS  + R+I++RD+ 
Sbjct: 509 REYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKL 568

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG+CSC DYW
Sbjct: 569 RFHHFKNGSCSCLDYW 584



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 19/306 (6%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEK 102
           LT +L      G ++  R +F  +   D   +  +I   ++ H  +  +L  + RM+   
Sbjct: 47  LTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSN 106

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V P+  T  +V+ +C  + AL  GR IH ++        +V V TAL++ Y KCG L +A
Sbjct: 107 VAPSNYTFTSVIKSCADLVALRHGRIIHGHVL-VNGFGSDVYVQTALMSFYGKCGVLCNA 165

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R VFD++ D+ VV WNSMI GY  +GF K+A++LF+ M  I ++P+  TF+ +LSACAH 
Sbjct: 166 RKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHL 225

Query: 223 GLVNEGRRFFNTMKDEYAI----EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           G    G         EYA+    +  V     ++N+ +R G V +A ++   MK E + V
Sbjct: 226 GAFILG-----CWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMK-ERNVV 279

Query: 279 LWGTLLGACRLHGNIALGEKIAEYL--ISQN--LANSGTYVLLSNIYAAIGNWDGVARVR 334
            W  ++     +G    G +  E    + +N  L NS T+V + +  A  G  +   RV 
Sbjct: 280 AWTAMISG---YGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVF 336

Query: 335 TLMKEK 340
             M+E+
Sbjct: 337 ESMREE 342



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 33/190 (17%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD ++ + TSL+++Y R G+V  A ++F +M +R++V+ T M++                
Sbjct: 243 LDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMIS---------------- 286

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GY  +G  ++A+ LF  M    + PN +T VAVLSAC   G +  
Sbjct: 287 ---------------GYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNE 331

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV-VVWNSMIVGY 184
           GR +   +     +   V+    L++M  + G L +A      ++++    +W +M+   
Sbjct: 332 GRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGAC 391

Query: 185 AMH-GFGKDA 193
            MH  FG  A
Sbjct: 392 KMHKNFGLGA 401


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/482 (44%), Positives = 308/482 (63%), Gaps = 4/482 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  LD +++V  +L+ ++ + G V  A  +F +   R   S  TM+  Y   G +  A
Sbjct: 304 AVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLA 363

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + LFD+M E+DVV W+ +I GY Q G   EAL  F +ML  +V+PNE T V+ L+AC  +
Sbjct: 364 KELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNL 423

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDKDVVVWNS 179
            AL+ G+WIH YI    NIK+N ++  +LI+MY+KCG +  A  VF +    + V  WN+
Sbjct: 424 VALDQGKWIHVYIRRD-NIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNA 482

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G+AMHG  ++A+ +F +M   ++ P+ +TFI LL+AC+H  +V EG+ +F  M  +Y
Sbjct: 483 MIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDY 542

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I P++EHYGCMV+LLSR+G ++++ ++++ M + PD  +WG LL ACR++ ++  G +I
Sbjct: 543 GINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRI 602

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE-PGCSSIELSNKVH 358
              +   +  + G  VLL NIY+  G W+    VR   +    +K+ PG SSIEL+   H
Sbjct: 603 GRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFH 662

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLA 417
           EFL GD  HP+S+EIY  L+E+   LK  GYVP+   VL D   E+ K+ +L VHSEKLA
Sbjct: 663 EFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLA 722

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL++T PGT I+IVKNLRVC DCH   K ISK   R I++RDR R+HHF +G CSC 
Sbjct: 723 IAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCK 782

Query: 478 DY 479
           DY
Sbjct: 783 DY 784



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 151/344 (43%), Gaps = 44/344 (12%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +SL+DL      +        T  Q +L  +            +  A  LFD + + D+ 
Sbjct: 183 SSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVALASLTYAHKLFDQIPQPDLF 242

Query: 74  CWNVMIDGYAQHGLAN-EALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHS 131
            +N MI  ++    +  +++ +FR ++ +    PN  + V    ACG    +  G  + +
Sbjct: 243 IYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFT 302

Query: 132 YIENSRNIKV----NVQVGTALINMYSKCGSLKDARLV---------------------- 165
           +      +KV    NV V  ALI M+ K G ++DAR V                      
Sbjct: 303 HA-----VKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGS 357

Query: 166 ---------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
                    FD ++++DVV W+++I GY   G   +AL  F++M +  +KP++ T +  L
Sbjct: 358 GNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSAL 417

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC++   +++G+     ++ +  I+        ++++ ++ G+++ A  +  + K++  
Sbjct: 418 AACSNLVALDQGKWIHVYIRRD-NIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRK 476

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSN 319
              W  ++G   +HG       + E +  + ++ N  T++ L N
Sbjct: 477 VWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/465 (45%), Positives = 297/465 (63%), Gaps = 2/465 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAA 59
            VK     DLYV  + +  Y   GDV +  K+F  +P  R +V+   +L  Y + G V  
Sbjct: 158 AVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGV 217

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD M  +D V W+ +I GY + G    AL +F+ M+A+ V+ NE   V  LSA  Q
Sbjct: 218 AREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQ 277

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+++H  ++    + ++V +G ALI+MYSKCGS+  A+ VFD +  +DV  WNS
Sbjct: 278 LGLLEQGKFVHEVVKRV-GMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G DA+QLF +       P+ ITF+G+L+AC+  GLV+EGRR+F  M ++Y
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IE ++EHYGCMV+LLSRAG V+EA +L+  M+I PD VLWGT+L AC+ HG + LG  +
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITV 456

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  + A+ G YVLL++IYA    WD V +VR LM  +G  K  G S +E    VH+
Sbjct: 457 GNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHK 516

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD+ H  S  IY ML  IN  L   GYVP    VLHDIG+++K ++++VHSE+LA+A
Sbjct: 517 FLVGDMNHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIA 576

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           +G I  + G+ I+IVKNL VC DCH   K+++K  GR+I++RD N
Sbjct: 577 YGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDAN 621


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/471 (43%), Positives = 296/471 (62%), Gaps = 1/471 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L V+ +L+ LY R G ++ A ++F  MP + LVS   +L+       +  A  +F +M  
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPV 372

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           + ++ W VMI G AQ+G   E L LF +M  E +EP +      +++C  +G+L++G+ +
Sbjct: 373 RSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQL 432

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           HS I    +   ++ VG ALI MYS+CG ++ A  VF  +   D V WN+MI   A HG 
Sbjct: 433 HSQIIQLGH-DSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGH 491

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           G  A+QL+ +M +  + P  ITF+ +LSAC+HAGLV EGR +F+TM+  Y I P+ +HY 
Sbjct: 492 GVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYS 551

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            +++LL RAG   EA  +   M  EP + +W  LL  C +HGN+ LG + A+ L+     
Sbjct: 552 RLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQ 611

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
             GTY+ LSN+YAA+G WD VARVR LM+E+GV+KEPGCS IE+ N VH FL  D  HP+
Sbjct: 612 QDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPE 671

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
              +Y  LE++   ++  GYVP T+ VLHD+  +QK+ +L  HSEKLAV +G++    G 
Sbjct: 672 VHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGA 731

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++ KNLR+C DCH  FK ISK   R+I++RDR RFHHF NG CSC +YW
Sbjct: 732 TIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 38/317 (11%)

Query: 28  SAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           +A KLF   P  +R   + TT++  Y +  ++ AAR L + M +   V WN MI GY   
Sbjct: 193 AARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHR 252

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS---RNIKVN 142
           G   EA  L RRM +  ++ +E T  +V+SA    G    GR +H+Y+  +    +    
Sbjct: 253 GFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV 312

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS----------------------- 179
           + V  ALI +Y++CG L +AR VFD++  KD+V WN+                       
Sbjct: 313 LSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPV 372

Query: 180 --------MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
                   MI G A +GFG++ L+LFN+M    L+P D  + G +++C+  G ++ G++ 
Sbjct: 373 RSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQL 432

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            + +  +   +  +     ++ + SR G VE A  + + M    DSV W  ++ A   HG
Sbjct: 433 HSQII-QLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYV-DSVSWNAMIAALAQHG 490

Query: 292 NIALGEKIAEYLISQNL 308
           +     ++ E ++ +++
Sbjct: 491 HGVQAIQLYEKMLKEDI 507



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 141/324 (43%), Gaps = 58/324 (17%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD--DMEEKDVV 73
           L+D Y +  ++  A  LF  +P+  +V+ TTML+ Y+  G +  A  LF+   M  +D V
Sbjct: 37  LIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTV 96

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA----------CGQI--- 120
            +N MI  ++     + AL LF +M      P+  T  +VL A          C Q+   
Sbjct: 97  SYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCE 156

Query: 121 ----GALESGRWIHS----YIENSRNIKVNVQV---------------------GTALIN 151
               GAL     +++    Y+  + +  VN  V                      T +I 
Sbjct: 157 VFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIA 216

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
            Y +   L  AR + + + D   V WN+MI GY   GF ++A  L   M  + ++  + T
Sbjct: 217 GYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYT 276

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG--------CMVNLLSRAGQVEE 263
           +  ++SA ++AGL N GR+        Y +   V+  G         ++ L +R G++ E
Sbjct: 277 YTSVISAASNAGLFNIGRQV-----HAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVE 331

Query: 264 AYKLVMDMKIEPDSVLWGTLLGAC 287
           A ++   M ++ D V W  +L  C
Sbjct: 332 ARRVFDKMPVK-DLVSWNAILSGC 354



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 33/237 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   D  L V  +L+ +Y+R G V +A+ +F TMP    VS   M+   A+ G      
Sbjct: 437 IQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHG------ 490

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG+  +A+ L+ +ML E + P+ +T + +LSAC   G
Sbjct: 491 -----------------------HGV--QAIQLYEKMLKEDILPDRITFLTILSACSHAG 525

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            ++ GR     +     I       + LI++  + G   +A+ V + +  +    +W ++
Sbjct: 526 LVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEAL 585

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           + G  +HG  +  +Q  + +  + +   D T+I L +  A  G  +E  R    M++
Sbjct: 586 LAGCWIHGNMELGIQAADRLLEL-MPQQDGTYISLSNMYAALGQWDEVARVRKLMRE 641


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/471 (43%), Positives = 307/471 (65%), Gaps = 10/471 (2%)

Query: 15  SLVDLYARGGDVLSAEKLFATM-----PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +L+D+YA+ GD   A+++F  +     PQ    S   ++  Y K G V  AR LFD+ME 
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQ----SWNAIIDGYCKHGHVDVARSLFDEMEV 334

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +D++ +N M+ GY   G   EAL+LF  M    +  +  T V +L+AC  +GAL+ GR +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H+ IE  R ++ ++ +GTAL++MY KCG + +A +VF R+  +DV  W +MI G A +G 
Sbjct: 395 HACIEQ-RLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGM 453

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           GK AL+ F +M     +P+ +++I +L+AC+H+ L+NEGR +F+ M+  Y I P++EHYG
Sbjct: 454 GKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG 513

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           CM++LL R+G ++EA  LV  M I+P++V+W ++L ACR+H +I L +  AE+L+     
Sbjct: 514 CMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPD 573

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
             G YV L NIY     W+  +++R LM+E+ V+K  G SSI ++ +VH+F+  D  HP+
Sbjct: 574 EDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPR 633

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
             EI  MLEEI+  LK+ GY P T  +  D+ E++K+ +L  HSEKLA+AFGLI+  P  
Sbjct: 634 ILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNL 693

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            + I KNLRVC DCH+  KLIS+   R+I++RDR+RFHHF  GTCSC D+W
Sbjct: 694 PVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 152/313 (48%), Gaps = 35/313 (11%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +VS SL+ +Y R G    A + F  +  +  V+ T +++  AK G +   ++L      +
Sbjct: 143 FVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVR 202

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           DV+ W  +I  Y++   A EA+  F+ ML+  + P+EVT +AVLSAC ++  LE GR +H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKD----------------------------- 161
             +E  + +  +  +  ALI+MY+KCG                                 
Sbjct: 263 LLVEE-KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321

Query: 162 ---ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
              AR +FD +  +D++ +NSM+ GY   G  ++AL LF  M R  L+  + T + LL+A
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTA 381

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA  G + +GR     + ++  +E  +     ++++  + G+V+EA  +V     + D  
Sbjct: 382 CASLGALQQGRALHACI-EQRLVEADIYLGTALLDMYMKCGRVDEA-TIVFQRMGKRDVH 439

Query: 279 LWGTLLGACRLHG 291
            W  ++     +G
Sbjct: 440 TWTAMIAGLAFNG 452


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/515 (41%), Positives = 314/515 (60%), Gaps = 39/515 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE------ 56
           K  LD +L+V   L+ LY + G +  A  +   M  + +VS  +M+  YA+  +      
Sbjct: 161 KVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALD 220

Query: 57  -------------------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
                                          V     +F ++E+K +V WNVMI  Y ++
Sbjct: 221 ICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKN 280

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
            +  +++ L+ +M   +VEP+ +T  +VL ACG + AL  GR IH Y+E  + +  N+ +
Sbjct: 281 SMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKK-LCPNMLL 339

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
             +LI+MY++CG L+DA+ VFDR+  +DV  W S+I  Y M G G +A+ LF EM     
Sbjct: 340 ENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQ 399

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
            P  I F+ +LSAC+H+GL+NEG+ +F  M D+Y I P +EH+ C+V+LL R+G+V+EAY
Sbjct: 400 SPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAY 459

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
            ++  M ++P+  +WG LL +CR++ N+ +G   A+ L+      SG YVLLSNIYA  G
Sbjct: 460 NIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAG 519

Query: 326 NWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLK 385
            W  V  +R+LMK + ++K PG S++EL+N+VH FLAGD  HP+SKEIY  L  + G +K
Sbjct: 520 RWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMK 579

Query: 386 AEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHA 445
             GYVP+T   LHD+ E+ K+  L VHSEKLA+ F +++TQ  + I+I KNLRVC DCH 
Sbjct: 580 ELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCHI 638

Query: 446 VFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             KLISK   R+I++RD NRFHHF +G CSCGDYW
Sbjct: 639 AAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 150/302 (49%), Gaps = 12/302 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA +GE   AR +FD + E++V+ +NVMI  Y  + L ++AL++FR M++    P+
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC     L  G  +H  +     + +N+ VG  LI +Y KCG L +AR V 
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKV-GLDLNLFVGNGLIALYGKCGCLPEARCVL 191

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  KDVV WNSM+ GYA +    DAL +  EM  +R KP   T   LL A  +    N
Sbjct: 192 DEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSEN 251

Query: 227 --EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                  F  ++ +  +   V     M N  S  G+  + Y  +   ++EPD++   ++L
Sbjct: 252 VLYVEEMFMNLEKKSLVSWNVMISVYMKN--SMPGKSVDLYLQMGKCEVEPDAITCASVL 309

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLMKEK 340
            AC     + LG +I EY+  + L  +   +LL N    +YA  G  +   RV   MK +
Sbjct: 310 RACGDLSALLLGRRIHEYVERKKLCPN---MLLENSLIDMYARCGCLEDAKRVFDRMKFR 366

Query: 341 GV 342
            V
Sbjct: 367 DV 368



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           Q   +++ + +HS + N  +   N  +G  L+  Y+  G    AR VFD + +++V+ +N
Sbjct: 44  QYPDIKTLKNVHSKVFN-LSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYN 102

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
            MI  Y  +    DAL +F +M      P   T+  +L AC+ +  +  G +    +  +
Sbjct: 103 VMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVF-K 161

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             ++  +     ++ L  + G + EA + V+D     D V W +++  
Sbjct: 162 VGLDLNLFVGNGLIALYGKCGCLPEA-RCVLDEMQSKDVVSWNSMVAG 208


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/437 (47%), Positives = 305/437 (69%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T +L  YA+  EVA AR +FD M E+K++V W+ MI GY++ G+ NEAL LFR M A  V
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+EVT V+V+SAC + GAL+ G+W+H++I+  + I V++++ TALI+MY+KCG ++ A+
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDR-KGITVDLELSTALIDMYAKCGLIERAK 284

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + ++D   W++MIVG AMHG  +DAL LF+ M +++++P+++TF+G+LSACAH+G
Sbjct: 285 SVFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSG 344

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV++GRR++ TM+ E  IE  +E+YGCMV+LL R+G ++EA+  V  M I P+SV+W  L
Sbjct: 345 LVDDGRRYWCTMQ-ELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNL 403

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L A +    I + E  +  L      N   YVLLSN+YA    WD V  +R  MK+  V 
Sbjct: 404 LVASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVT 463

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
              GCSSIE++  +H+F+  D  HP+ K+I ++L EI   +   G+ P T  VLHD+ E+
Sbjct: 464 VVAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEE 523

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+ +L  HSE+LA+A+GL+ T+    I++VKNLR CPDCH V K+ISK  GR+I++RDR
Sbjct: 524 EKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDR 583

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFH F+ G+CSC D+W
Sbjct: 584 VRFHRFIGGSCSCNDFW 600



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 16/293 (5%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDG-----YAQHGLANEALVLFRRML-AEKVEPNEVTAVAV 113
           AR LFD + E    C+N +I        + +    +  +L+RRML A    PN  T   V
Sbjct: 77  ARALFDQIPEPTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLAFV 136

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD-RVNDK 172
           L AC  +G    G+ +H+       ++ +  V T L+N+Y++C  +  AR VFD  V DK
Sbjct: 137 LKACTALG---EGQQLHAQ-AFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVEDK 192

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           ++V W+SMI GY+  G   +AL LF +M  + + P ++T + ++SACA AG ++ G ++ 
Sbjct: 193 NLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLG-KWV 251

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG- 291
           +   D   I   +E    ++++ ++ G +E A K V D  +E D+  W  ++    +HG 
Sbjct: 252 HAFIDRKGITVDLELSTALIDMYAKCGLIERA-KSVFDSMVERDTKAWSAMIVGLAMHGL 310

Query: 292 -NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
              ALG   +  L  +   N+ T+V + +  A  G  D   R    M+E G++
Sbjct: 311 AEDALG-LFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIE 362


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/440 (47%), Positives = 293/440 (66%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +VS TTM+    + G V  AR +FD M  +++V WN MI GY +     +AL +F  M A
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRA 223

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VE N   A + L AC   GAL  GR I+ ++E S  I+V+ ++ TA+++MY KCG + 
Sbjct: 224 LGVEGNGFVATSALVACTGAGALGRGREIYRWVEQS-GIEVDAKLATAVVDMYCKCGCVD 282

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A  VFD +  + +  WN MI G+A+HG   DAL+LF++M    + P D+T + +L+ACA
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           HAG V+EGRR+ N +   + IEPK EHYGCMV+L  RAGQ++EA K++ +M ++PD  + 
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGAC++HG++ LGE I   +I  +  NSG YVLL+N+ A  G WD V +VR LM E+
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            V KE G S IE+  +  EF  G+LRHP+++EIY M  ++   ++AEGYVP T   LHD+
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+ +L  HSEKLA+AFGL+  +P  +++I KNLRVC DCH   K +S+  GR+I++
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDR+RFHHF +G CSC DYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/436 (48%), Positives = 287/436 (65%), Gaps = 3/436 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+  G+   A  +F  M ++DVV W  MIDG+     A EA+ LF  M+ + VEPN
Sbjct: 137 LIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPN 196

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T V+VL AC   GA+  GR +   IE  R I +   V TALI+MY+KCGS+  AR VF
Sbjct: 197 EATVVSVLRACADAGAVGMGRRVQGVIEE-RKIGLEANVRTALIDMYAKCGSIGSARKVF 255

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + +KDV  W +MI G A HG  ++A+ LF++M    L+P + T   +LSAC +AG  +
Sbjct: 256 DGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFS 315

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG  +FN+M  +Y I+P ++HYGCMV+LL+R G ++EA + +  M IEPD VLW TL+ A
Sbjct: 316 EGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWA 375

Query: 287 CRLHGNIALGEKIAEY--LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ++HG+I   E++ +   L+  +  + G+YVLL N+YA+ G W   A++R LM +KG+ K
Sbjct: 376 SKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSK 435

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCS IE+   VHEF AGD  H ++++IY  L+E+   LKAEGY P+   VL +I  K+
Sbjct: 436 PPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKE 495

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSEKLAVAFGLI T PGT I+IVKNLR C DCH+V KLISK   + I++RDR 
Sbjct: 496 KAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRI 555

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF+NG CSC DYW
Sbjct: 556 RFHHFINGDCSCKDYW 571



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 134/270 (49%), Gaps = 9/270 (3%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYA--KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           L A+ L +  P++   +LT + T  A    G++  A ++ + +  ++    N MI  Y+Q
Sbjct: 12  LHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQ 71

Query: 85  HGLANEALVLFRRMLAEKV--EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                +AL LF  ML +     P++ T   +L +C ++     G+ +H  I  S  ++ +
Sbjct: 72  TPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKS-GLESD 130

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
             V   LI+MYS CG    A  VF ++ D+DVV W SMI G+       +A++LF EM  
Sbjct: 131 RYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVE 190

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD-EYAIEPKVEHYGCMVNLLSRAGQV 261
             ++P++ T + +L ACA AG V  GRR    +++ +  +E  V     ++++ ++ G +
Sbjct: 191 DGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVR--TALIDMYAKCGSI 248

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             A K V D  +  D   W  ++     HG
Sbjct: 249 GSARK-VFDGIVNKDVFAWTAMISGLANHG 277



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 2/181 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G + +AR +FD +  KDV  W  MI G A HGL  EA+ LF +M +  + 
Sbjct: 236 TALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLR 295

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E T  AVLSAC   G    G    + +     IK  +Q    ++++ ++ G L +A  
Sbjct: 296 PDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEE 355

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHA 222
              ++  + DVV+W ++I    +HG    + QL  +   +++   D  +++ L +  A A
Sbjct: 356 FIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASA 415

Query: 223 G 223
           G
Sbjct: 416 G 416


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 286/445 (64%), Gaps = 4/445 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R  +  T+++ CYA +G+   AR LFD+M  +D V WNV+I  YA++    +AL LF  M
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213

Query: 99  LAE--KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
             +  + EP++VT + +L AC  +GAL+ G  + +Y E        ++V  +LI MY +C
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEE-HGYGGELKVRNSLITMYLRC 272

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G +  A  VF     K VV W +MI G A +GFG DA+ +F EM R  + P + TF G+L
Sbjct: 273 GCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVL 332

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM-DMKIEP 275
           SAC+H+GLV+EG RFF+ M+ EY ++P V HYGC+V+L+ RAG ++EAY+ V  +MK+ P
Sbjct: 333 SACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAP 392

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D+ +W TLLGACR+HG++ LGE++   LI      +G YVLL N YAA+G W  V+ +R 
Sbjct: 393 DATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRK 452

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
           LM+E+G+Q  PGC+++E +  VHEF+A D  HP+  EIY  L EI   L+  GYVP    
Sbjct: 453 LMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSS 512

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            LHD+  + K+++L  HSEKLA+AF L+ T     I++ KNLRVC DCH   K+ S    
Sbjct: 513 ELHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYR 572

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R +++RDR RFHHF  G CSC DYW
Sbjct: 573 RIVIVRDRTRFHHFQGGKCSCNDYW 597



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 39/185 (21%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L V  SL+ +Y R G V  A ++F+  PQ+S+V+ T M                     
Sbjct: 258 ELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAM--------------------- 296

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                     I G A +G  N+A+ +F  M+   V P+E T   VLSAC   G ++ G  
Sbjct: 297 ----------ISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 346

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVG 183
               +     +K NV+    ++++  + G L +A   ++ V ++     D  +W +++  
Sbjct: 347 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA---YEFVTNEMKVAPDATIWRTLLGA 403

Query: 184 YAMHG 188
             +HG
Sbjct: 404 CRIHG 408


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/439 (47%), Positives = 291/439 (66%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT+L  YAK G V+ A  +F  M  K+ V W+ MI  +A++ +  +AL LF+ M+ E  
Sbjct: 221 MTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEAC 280

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              PN VT V +L AC  + ALE G+ IH YI   R +   + V  ALI MY +CG +  
Sbjct: 281 NSVPNSVTMVNMLQACAGLAALEQGKLIHGYILR-RQLDSILPVLNALITMYGRCGEVLM 339

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            + VFD +  +DVV WNS+I  Y MHGFGK A+Q+F  M    + PS I+FI +L AC+H
Sbjct: 340 GQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSH 399

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV EG+  F +M  +Y I P +EHY CMV+LL RA ++ EA KL+ DM  EP   +WG
Sbjct: 400 AGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWG 459

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG+CR+H N+ L E+ +  L      N+G YVLL++IYA    W     V  L++ +G
Sbjct: 460 SLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARG 519

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK PGCS IE+  KV+ F++ D  +P+ +EI+ +L +++  +KA+GYVPQT +VL+D+ 
Sbjct: 520 LQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLD 579

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+  +  HSEKLAVAFGLI+T  G +I+I KNLR+C DCHAV K ISKF  R+I++R
Sbjct: 580 EEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVR 639

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSCGDYW
Sbjct: 640 DVNRFHHFRDGVCSCGDYW 658



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 129/277 (46%), Gaps = 17/277 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y + G +  A  +FD+  E+ +  WN +    A  G   E L L+ +M      
Sbjct: 117 TKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTP 176

Query: 105 PNEVTAVAVLSACG----QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   VL AC      +  L  G+ IH++I      + N+ V T L+++Y+K GS+ 
Sbjct: 177 SDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILR-HGYEANIHVMTTLLDVYAKFGSVS 235

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN----EMCRIRLKPSDITFIGLL 216
            A  VF  +  K+ V W++MI  +A +     AL+LF     E C     P+ +T + +L
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNS--VPNSVTMVNML 293

Query: 217 SACAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
            ACA    + +G+     +  +   +I P +     ++ +  R G+V    ++  +MK +
Sbjct: 294 QACAGLAALEQGKLIHGYILRRQLDSILPVL---NALITMYGRCGEVLMGQRVFDNMK-K 349

Query: 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
            D V W +L+    +HG      +I E +I Q ++ S
Sbjct: 350 RDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPS 386



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 44/272 (16%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I    + G   +AL     +L  +  P + T   ++ +C Q  +L  G  +H  + +
Sbjct: 51  NQLIQSLCKGGNLKQAL----HLLCCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           S     +  + T LINMY + GS+  A  VFD   ++ + VWN++    AM G GK+ L 
Sbjct: 107 S-GFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLD 165

Query: 196 LFNEMCRIRLKPSDITFIGLLSACA---------------HAGLVNEGR----RFFNTMK 236
           L+ +M  I       T+  +L AC                HA ++  G         T+ 
Sbjct: 166 LYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLL 225

Query: 237 DEYAIEPKVEH---------------YGCMVNLLSRAGQVEEAYKLVMDMKIE-----PD 276
           D YA    V +               +  M+   ++     +A +L   M  E     P+
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPN 285

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           SV    +L AC     +  G+ I  Y++ + L
Sbjct: 286 SVTMVNMLQACAGLAALEQGKLIHGYILRRQL 317


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/443 (44%), Positives = 296/443 (66%), Gaps = 2/443 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++     ++  YAK G +  A  +F +M  KD++ WN MI GY+++ L NEAL LF  
Sbjct: 131 QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGD 190

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+ E ++P+  T   +L AC  + +L+ G+ +H +I  +     + QV  AL++MY KCG
Sbjct: 191 MVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRN-GFFSDQQVANALVDMYVKCG 248

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
               ARL+FD +  KD++ W  MI GY MHGFG +A+  FNEM +  ++P +++FI +L 
Sbjct: 249 VPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILY 308

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+H+GL++EG RFFN M+DE  ++PK+EHY C+V+LL+R+G++  AYK +  M IEPD+
Sbjct: 309 ACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDA 368

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +WG LL  CR+H ++ L EK+AE++      N+G YVLL+N YA    W+ V ++R  +
Sbjct: 369 TIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKI 428

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
             +G++K PGCS IE+ +KVH FLAG+  HP++K+I ++L+ +   +K EGY P+T+  L
Sbjct: 429 GRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYAL 488

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
            +    QK+ +L  HSEKLA+AFG+++  P  +I++ KNLRVC DCH + K ISK  GR+
Sbjct: 489 INADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGRE 548

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD NRFHHF +G C C  +W
Sbjct: 549 IVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T+L  YAK G +  A ++FD M  + VV W  +I  YA+ GL++EA+ LF  M  E V P
Sbjct: 38  TLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSP 97

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T   VL AC   G+LE+G+ +H+YI  + +++ N+ V  AL++MY+KCGS++DA  V
Sbjct: 98  DIFTITTVLHACACNGSLENGKDVHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSV 156

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  KD++ WN+MI GY+ +    +AL LF +M  + +KP   T   +L ACA    +
Sbjct: 157 FLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASL 215

Query: 226 NEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + G+    + +++ +  + +V +   +V++  + G V    +L+ DM    D + W  ++
Sbjct: 216 DRGKEVHGHILRNGFFSDQQVAN--ALVDMYVKCG-VPVLARLLFDMIPTKDLITWTVMI 272

Query: 285 GACRLHG 291
               +HG
Sbjct: 273 AGYGMHG 279



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 11/180 (6%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT----ALINMYSKCGSLKDARLVF 166
           V++L AC   G +  GR +H        +K  V   T     L++MY+KCG L  A LVF
Sbjct: 2   VSILQACANCGDVSLGRAVH-----GSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVF 56

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D ++ + VV W S+I  YA  G   +A++LF+EM R  + P   T   +L ACA  G + 
Sbjct: 57  DLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLE 116

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G+   N ++ E  ++  +     ++++ ++ G +E+A  + ++M ++ D + W T++G 
Sbjct: 117 NGKDVHNYIR-ENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGG 174


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/472 (44%), Positives = 302/472 (63%), Gaps = 16/472 (3%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G +L    L    P        ++L  YAK G++  +R +FD + E D+  WNV+++ YA
Sbjct: 270 GPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYA 329

Query: 84  QH-------------GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +                + E+L LFR M    + PNEVT VA++SAC  +GA+  G W+H
Sbjct: 330 RSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVH 389

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHG 188
            ++  ++ IK+N  VGTA ++MYSKCG L  A  VFD++  ND+D   + +MI G+A+HG
Sbjct: 390 CFVLRNK-IKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHG 448

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           +G  AL+L+ +M    L P   TF+  + AC+H GLV EG   F +MK+ + +EPK+EHY
Sbjct: 449 YGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHY 508

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GC+++LL RAG+++EA + + DM ++P++VLW +LLGA R+HGN+ +GE     LI    
Sbjct: 509 GCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEP 568

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
             SG YVLLSN+YA++G  + V RVR LMK  GV K PG S +E+   +HEFL GD  HP
Sbjct: 569 ETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHP 628

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            SKEIY+ + EIN  L+  G+  +T   L D+ E+ K+  L  HSE+LA+AF LI++   
Sbjct: 629 FSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSS 688

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I+I+KNLRVC DCHA  KLIS    R+I++RDRNRFHHF +G+CSC DYW
Sbjct: 689 LAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANE---ALVLFRRMLAEK-VEPNEVTAVAVLSAC- 117
           +F+ +    +  +N +I         N+   A  L+ ++L  K ++PN  T  ++  AC 
Sbjct: 202 IFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACC 261

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
                   G  +H+++        +  V  +L+N Y+K G +  +R +FDR+N+ D+  W
Sbjct: 262 SNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATW 321

Query: 178 NSMIVGYAMH-------------GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           N ++  YA                F  ++L LF +M  I ++P+++T + L+SAC++ G 
Sbjct: 322 NVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGA 381

Query: 225 VNEG 228
           V++G
Sbjct: 382 VSQG 385


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/478 (43%), Positives = 305/478 (63%), Gaps = 7/478 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++ T+LV +YA  G +  A + F  M  R+L   T M++ Y+K G +  A+V+FD  E
Sbjct: 246 DTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTE 305

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +KD+VCW  MI  Y +     EAL +F  M    ++P+ V+  +V+SAC  +G L+  +W
Sbjct: 306 KKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKW 365

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +HS I +   ++  + +  ALINMY+KCG L   R VF+++  ++VV W+SMI   +MHG
Sbjct: 366 VHSCI-HVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHG 424

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
              DAL LF  M +  ++P+++TF+G+L  C+H+GLV EG++ F +M DEY I PK+EHY
Sbjct: 425 EASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHY 484

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+L  RA  + EA +++  M +  + V+WG+L+ ACR+HG + LG+  A+ ++    
Sbjct: 485 GCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEP 544

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            + G  VL+SNIYA    W+ V  +R +M+EK V KE G S I+ + K HEFL GD RH 
Sbjct: 545 DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHK 604

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +S EIY  L+E+   LK  GYVP    VL D+ E++K++ +  HSEKLA+ FGL++ +  
Sbjct: 605 QSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKE 664

Query: 429 TS------IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
                   I+IVKNLRVC DCH  FKL+SK   R+I++RDR RFH + NG CSC DYW
Sbjct: 665 EEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 164/377 (43%), Gaps = 99/377 (26%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V T  +D+YA  G +  A  +F  M  R +V+  TM+  Y + G V  A  LF++M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           + +V+                               P+E+    ++SACG+ G +   R 
Sbjct: 205 DSNVM-------------------------------PDEMILCNIVSACGRTGNMRYNRA 233

Query: 129 IHSY-IENS----------------------------RNIKV-NVQVGTALINMYSKCGS 158
           I+ + IEN                             R + V N+ V TA+++ YSKCG 
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L DA+++FD+   KD+V W +MI  Y    + ++AL++F EMC   +KP  ++   ++SA
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353

Query: 219 CAHAGLVNEGRRF----------------------------FNTMKDEYAIEPK--VEHY 248
           CA+ G++++ +                               +  +D +   P+  V  +
Sbjct: 354 CANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSW 413

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----A 300
             M+N LS  G+  +A  L   MK   +EP+ V +  +L  C   G +  G+KI      
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473

Query: 301 EYLISQNLANSGTYVLL 317
           EY I+  L + G  V L
Sbjct: 474 EYNITPKLEHYGCMVDL 490



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 32/184 (17%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L+ +L ++ +L+++YA+ G + +   +F  MP+R++VS ++M+   +  GE         
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE--------- 425

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                                 A++AL LF RM  E VEPNEVT V VL  C   G +E 
Sbjct: 426 ----------------------ASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEE 463

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
           G+ I + + +  NI   ++    +++++ +   L++A  V + +    +VV+W S++   
Sbjct: 464 GKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523

Query: 185 AMHG 188
            +HG
Sbjct: 524 RIHG 527



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 32/244 (13%)

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
           + +N  +   ++       ++ ++R+       ++ + + +L A  ++ AL  G  +H  
Sbjct: 77  IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  +  V T  ++MY+ CG +  AR VFD ++ +DVV WN+MI  Y   G   +
Sbjct: 137 AFKIATL-CDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDE 195

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------NTMKDEYAIEPKVE 246
           A +LF EM    + P ++    ++SAC   G +   R  +      +   D + +   V 
Sbjct: 196 AFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVT 255

Query: 247 HY---GC---------------------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            Y   GC                     MV+  S+ G++++A +++ D   + D V W T
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDA-QVIFDQTEKKDLVCWTT 314

Query: 283 LLGA 286
           ++ A
Sbjct: 315 MISA 318



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK- 272
           G +   A  G +N  R  F+ M         V  +  M+    R G V+EA+KL  +MK 
Sbjct: 151 GFMDMYASCGRINYARNVFDEMSHR-----DVVTWNTMIERYCRFGLVDEAFKLFEEMKD 205

Query: 273 --IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWD 328
             + PD ++   ++ AC   GN+     I E+LI +N     T++L  L  +YA  G  D
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI-ENDVRMDTHLLTALVTMYAGAGCMD 264


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/439 (47%), Positives = 307/439 (69%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT++  YAK G V+ A  +F+ M  K+VV W+ MI  YA++G A EAL LFR ++ E  
Sbjct: 213 MTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQ 272

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +  PN VT V+VL AC  + ALE GR IH YI   + +   + V +AL+ MY++CG L+ 
Sbjct: 273 DLCPNSVTMVSVLQACAALAALEQGRLIHGYILR-KGLDSILPVISALVTMYARCGKLEL 331

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            + VFD+++ +DVV WNS+I  Y +HGFGK A+ +F EM    ++PS I+F+ +L AC+H
Sbjct: 332 GQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSH 391

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV+EG+  FN+M   + I P VEHY CMV+LL RA ++EEA K++ +M+IEP   +WG
Sbjct: 392 AGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWG 451

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG+CR+H N+ L E+ +  L      N+G YVLL++IYA  G WDGV RV+ L++ +G
Sbjct: 452 SLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARG 511

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK PG S IE+  K++ F++ D  +P+ ++++ +L +++  LK EGYVPQT++VL+D+ 
Sbjct: 512 LQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLK 571

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
             +K+  +  HSEKLAVAFGLI++  G  I+I K+LR+C DCH+  K ISKF  ++I++R
Sbjct: 572 AAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVR 631

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSCGDYW
Sbjct: 632 DVNRFHHFRDGVCSCGDYW 650



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 13/255 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+    +  AR +FD    + +  +N +    +  G   E L ++RRM +  + 
Sbjct: 109 TKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIP 168

Query: 105 PNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   VL AC      +  L  GR IH++I         V + T L++MY+K G + 
Sbjct: 169 SDRFTYTYVLKACVASECFVSLLNKGREIHAHILR-HGYDGYVHIMTTLVDMYAKFGCVS 227

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSA 218
           +A  VF+++  K+VV W++MI  YA +G   +AL+LF E+      L P+ +T + +L A
Sbjct: 228 NASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQA 287

Query: 219 CAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA    + +GR     +  K   +I P +     +V + +R G++E   + V D   + D
Sbjct: 288 CAALAALEQGRLIHGYILRKGLDSILPVI---SALVTMYARCGKLELGQR-VFDQMDKRD 343

Query: 277 SVLWGTLLGACRLHG 291
            V W +L+ +  +HG
Sbjct: 344 VVSWNSLISSYGVHG 358



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 47/308 (15%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI-E 134
           N +I    + G   +AL     +L+ +  P + T   ++ +C    +L   + +H ++ E
Sbjct: 43  NKLIQSLCKQGNLTQAL----ELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
           N      +  + T LINMYS   S+ +AR VFD+  ++ + V+N++    ++ G G++ L
Sbjct: 99  NG--FDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVL 156

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHA----GLVNEGR---------------RFFNTM 235
            ++  M  I +     T+  +L AC  +     L+N+GR                   T+
Sbjct: 157 NMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTL 216

Query: 236 KDEYAIEPKVEHYGCMVNLL---------------SRAGQVEEAYKLVMDMKIE-----P 275
            D YA    V +  C+ N +               ++ G+  EA +L  ++ +E     P
Sbjct: 217 VDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCP 276

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVR 334
           +SV   ++L AC     +  G  I  Y++ + L +    +  L  +YA  G  +   RV 
Sbjct: 277 NSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVF 336

Query: 335 TLMKEKGV 342
             M ++ V
Sbjct: 337 DQMDKRDV 344


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/436 (44%), Positives = 293/436 (67%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  YA+ G++  A  +FD ++ K+ V WN +I G+A+ G    AL++F  M     E
Sbjct: 191 SALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFE 250

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
               T  ++ S    IGALE G+W+H+++  SR  K+   VG  +++MY+K GS+ DAR 
Sbjct: 251 ATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQ-KLTAFVGNTMLDMYAKSGSMIDARK 309

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+RV +KD+V WNSM+  +A +G GK+A+  F EM +  +  + ITF+ +L+AC+H GL
Sbjct: 310 VFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGL 369

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG+ +F+ +K EY +EP++EHY  +V+LL RAG +  A   +  M +EP + +WG LL
Sbjct: 370 VKEGKHYFDMIK-EYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALL 428

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H N  +G+  A+++   +  +SG  VLL NIYA+ G+WD  ARVR +MK  GV+K
Sbjct: 429 AACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKK 488

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N VH F+A D  HP+++EIY M +EI+  ++ EGYVP    VL  + E++
Sbjct: 489 EPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQE 548

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L+ HSEK+A+AF LI    G +I+I+KN+R+C DCH+ FK ISK   R+I++RD N
Sbjct: 549 REANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTN 608

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG+CSCGDYW
Sbjct: 609 RFHHFSNGSCSCGDYW 624



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 144/272 (52%), Gaps = 10/272 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++  Y K G V  A  +FD M +KD+V W  +I GYAQ+ +  EA+ L   ML  + +
Sbjct: 90  NSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFK 149

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  ++L A G       G  IH+ +    +   +V VG+AL++MY++CG +  A  
Sbjct: 150 PNGFTFASLLKAAGAYADSGIGGQIHA-LAVKCDWHEDVYVGSALLDMYARCGKMDMATA 208

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD+++ K+ V WN++I G+A  G G+ AL +F EM R   + +  T+  + S  A  G 
Sbjct: 209 VFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGA 268

Query: 225 VNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G+     M K    +   V +   M+++ +++G + +A K V +  +  D V W ++
Sbjct: 269 LEQGKWVHAHMVKSRQKLTAFVGN--TMLDMYAKSGSMIDARK-VFERVLNKDLVTWNSM 325

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
           L A   +G   LG++   +   + +  SG Y+
Sbjct: 326 LTAFAQYG---LGKEAVSHF--EEMRKSGIYL 352



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           ++ P      A ++AC Q   L+  R IH ++ +SR  + +  +  +LI++Y KCGS+ +
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSR-FEGDAFLDNSLIHLYCKCGSVVE 104

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           A  VFD++  KD+V W S+I GYA +    +A+ L   M + R KP+  TF  LL A
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/483 (43%), Positives = 302/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEV 57
           V+  +  D Y    ++      GD+ S E +   M     Q++    TT++  YAK G++
Sbjct: 204 VEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             AR +FD M EKD+V W+ MI GYA +    E +  F +ML E ++P++ + V  LS+C
Sbjct: 264 EKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSC 323

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +GAL+ G W  S I+    +  N+ +  ALI+MY+KCG++     VF  + +KD+V+ 
Sbjct: 324 ASLGALDLGEWGISLIDRHEFL-TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+ I G A +G  K +  +F +  ++ + P   TF+GLL  C HAGL+ +G RFFN +  
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            YA++  VEHYGCMV+L  RAG +++AY+L+ DM + P++++WG LL  CRL  +  L E
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
            + + LI+    N+G YV LSNIY+  G WD  A VR +M  KG++K PG S IEL   V
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTV 562

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEFLA D  HP S +IY  LE++   ++  G+VP T+ V  D+ +++K+  L  HSEKLA
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKLA 622

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFGLIST  G  I++VKNLRVC DCH V KLISK T R+I++RD NRFH F NG+CSC 
Sbjct: 623 VAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCN 682

Query: 478 DYW 480
           DYW
Sbjct: 683 DYW 685



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 146/255 (57%), Gaps = 3/255 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           + ++T++L+ Y+  G +  A  +F+++ E+ VV W  +  GY   G   EA+ LF++M+ 
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVE 205

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+    V VLSAC  +G L+SG WI  ++E    ++ N  V T L+N+Y+KCG ++
Sbjct: 206 MGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHME-EMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR VFD + +KD+V W++MI GYA + F K+ ++ F +M +  LKP   + +G LS+CA
Sbjct: 265 KARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G ++ G  +  ++ D +     +     ++++ ++ G +   +++  +MK E D V+ 
Sbjct: 325 SLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIM 382

Query: 281 GTLLGACRLHGNIAL 295
              +     +G++ L
Sbjct: 383 NAAISGLAKNGHVKL 397



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 5/244 (2%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV+L    T + +Q   +   +LF   +  ++  +N +I+G+  + L +E L LF  +  
Sbjct: 47  LVNLLLKRTLFFRQTHYSF--LLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRK 104

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             +  +  T   VL AC +    + G  +HS +        +V   T+L+++YS  G L 
Sbjct: 105 HGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKC-GFNHDVAAMTSLLSIYSGSGRLN 163

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  VF+ + ++ VV W ++  GY   G  ++A+ LF +M  + ++P     + +LSAC 
Sbjct: 164 DAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACV 223

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H G ++ G      M +E  ++        +VNL ++ G++E+A + V D   E D V W
Sbjct: 224 HVGDLDSGEWIVKHM-EEMEMQKNSFVRTTLVNLYAKCGKMEKA-RSVFDSMGEKDIVTW 281

Query: 281 GTLL 284
            T++
Sbjct: 282 STMI 285


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/452 (44%), Positives = 293/452 (64%), Gaps = 3/452 (0%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++F    Q   + LT+M+  Y+  G+   A  LFD++ +KDVV WNV+I    ++    +
Sbjct: 152 RIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRD 211

Query: 91  ALVLFRRMLAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           AL LF  M +     +P++VT + +L AC  + ALE G  IH YI+          +  +
Sbjct: 212 ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQ-HGYNTESNLCNS 270

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI+MYS+CG +  A  VFD++ +K+VV W++MI G +M+G G++A++ F EM +  ++P 
Sbjct: 271 LISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPG 330

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           D TF  +LSAC+H GLV+EG  FF+ M+ E+ I P V HYGC+V+LL RAG +++AY+L+
Sbjct: 331 DHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELI 390

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
           M M++ PD+ +W TLLGACR+HG+  LGE+I E+LI      +G YVLL NIY++ GNWD
Sbjct: 391 MSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWD 450

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
            V  +R LMKEKG+   P C++IEL+  VH+F   D+ HP   +IY  L+EIN  LK  G
Sbjct: 451 KVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAG 510

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           Y  +    LH +  K K  +L  HSEKLA+AFG+++T PG +I+I  N+R C DCH   K
Sbjct: 511 YEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAK 570

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            IS    RK+++RDR+RFHHF  G CSC D+W
Sbjct: 571 YISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 129/259 (49%), Gaps = 8/259 (3%)

Query: 38  QRSLVSLTTML-TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
           Q  +VSL  +  T  A   ++  +R LFD +    V  +N M+  Y+      E L ++R
Sbjct: 57  QDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYR 116

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            M  + V  + +++   + +C ++ +L  G  IH+ I  + + + +  + T+++++YS C
Sbjct: 117 DMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGH-QADSLLLTSMMDLYSHC 175

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIG 214
           G  ++A  +FD V  KDVV WN +I     +   +DAL LF  M       +P  +T + 
Sbjct: 176 GKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLL 235

Query: 215 LLSACAHAGLVNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
           LL ACA    +  G R    ++   Y  E  +     ++++ SR G++++AY+ V D   
Sbjct: 236 LLQACADLNALEFGERIHGYIQQHGYNTESNL--CNSLISMYSRCGRMDKAYE-VFDKMT 292

Query: 274 EPDSVLWGTLLGACRLHGN 292
           E + V W  ++    ++G+
Sbjct: 293 EKNVVSWSAMISGLSMNGH 311


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/433 (48%), Positives = 288/433 (66%), Gaps = 14/433 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  YAK GE+     +F +   +DVV WN MI  + Q G   EAL LF+ M  + V
Sbjct: 174 LNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNV 233

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +PN +T V VLSAC +    E GRW+HSYIE +R I  ++ +  A+++MY+KCGS++DA+
Sbjct: 234 KPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR-IXESLTLSNAMLDMYTKCGSVEDAK 292

Query: 164 LVFDRVNDKDVVVWNSMIVGYA------------MHGFGKDALQLFNEMCRIRLKPSDIT 211
            +FD++ +KD+V W +M+VGYA            MHG GKDA+ LF++M   ++KP+ +T
Sbjct: 293 RLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVT 352

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F  +L AC+H GLV EGR FFN M+  Y + P V+HY CMV++L RAG +EEA +L+  M
Sbjct: 353 FTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 412

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
            + P + +WG LLGAC +H N+ L E+    LI     N G YVLLSNIYA  G WD V+
Sbjct: 413 PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVS 472

Query: 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            +R LM++ G++KEPGCSSIE+   VHEFL GD  HP +K+IY  L+EI   L+  GYVP
Sbjct: 473 GLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVP 532

Query: 392 QTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLI 450
               +L  + E+  K+ +L +HSEKLA+AFGLIST     I+IVKNLRVC DCH+V KL+
Sbjct: 533 NKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLV 592

Query: 451 SKFTGRKIMMRDR 463
           SK   R+I++RDR
Sbjct: 593 SKLYDREILLRDR 605



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 140/293 (47%), Gaps = 34/293 (11%)

Query: 25  DVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           D  SA +L          SL      YA+Q        +FD +   ++  WN +I  YA 
Sbjct: 66  DPFSASRLITAAALSPFPSLD-----YAQQ--------VFDQIPHPNLYTWNTLIRAYAS 112

Query: 85  HGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-- 141
               +++L++F RML +  + P++ T   ++ A  ++  L +G+  H  +     IKV  
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMV-----IKVLL 167

Query: 142 --NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
             +V +  +LI+ Y+KCG L     VF     +DVV WNSMI  +   G  ++AL+LF E
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M    +KP+ IT +G+LSACA       G R+ ++  +   I   +     M+++ ++ G
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIXESLTLSNAMLDMYTKCG 286

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            VE+A +L  D   E D V W T+L             KI EY  +Q LA  G
Sbjct: 287 SVEDAKRL-FDKMPEKDIVSWTTMLVGY---------AKIGEYDAAQGLAMHG 329



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 20/183 (10%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           + + L +S +++D+Y + G V  A++LF  MP++ +VS TTML  YAK GE  AA+    
Sbjct: 268 IXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ---- 323

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          G A HG   +A+ LF +M  +KV+PN VT   +L AC  +G +E 
Sbjct: 324 ---------------GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEE 368

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNSMIVGY 184
           GR   + +E    +   V+    ++++  + G L++A  + +++       VW +++   
Sbjct: 369 GRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGAC 428

Query: 185 AMH 187
            +H
Sbjct: 429 TIH 431


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/463 (46%), Positives = 295/463 (63%), Gaps = 9/463 (1%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD--DMEEKDVVCWNVM 78
           A  G  + A      +  R      +ML+ YA  G++ AAR +FD     ++D+  WN +
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-IENSR 137
           +  Y   GL    L LFR+M+A     +EVT +AV+SAC  +GAL++GRW H+Y     R
Sbjct: 175 LHAYLSQGLYTHVLRLFRQMVAT----DEVTLLAVVSACSHLGALDTGRWAHAYHARTCR 230

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           N   N+  GTAL+NMY +CG ++ A  VF  + DKDV  W+ MI G A++G  +DAL+LF
Sbjct: 231 NTTRNL--GTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLF 288

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
            EM  I + P  IT   +LSAC+HAG+V+EG+ F + M  EY ++P +EHYGC+V+LL R
Sbjct: 289 AEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGR 348

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317
           AGQ+EEA  L+  +  + D  LWG LL ACR H N+ +G+  A  ++  +  ++G  V L
Sbjct: 349 AGQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHHAGACVFL 408

Query: 318 SNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMML 377
           SN YAA G WD V  VR+ MKE  + K PG S +EL   V+EFL+GD  HP+S  IY ML
Sbjct: 409 SNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVYEFLSGDHSHPQSDRIYAML 468

Query: 378 EEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNL 437
           +E+   L  +G+ P T+ V  DI E+ K+  +  HSEKLA+A GLIST+ G  I+IVKNL
Sbjct: 469 DEVCKTLSLKGHRPSTKEVAFDIDEEDKEVCISQHSEKLALALGLISTRRGAVIRIVKNL 528

Query: 438 RVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+C DCH+V K++S+   R I++RDRNRFHHF NG+CSC DYW
Sbjct: 529 RICEDCHSVMKIVSEVYDRVIVVRDRNRFHHFKNGSCSCLDYW 571


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/469 (45%), Positives = 305/469 (65%), Gaps = 4/469 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQR---SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +L+  Y   G    A +LF +        +VS TTM+    + G V  AR LFD M E++
Sbjct: 132 ALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPERN 191

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           ++ WN MI GY + G   +AL +F +M A  +E N   A + + AC   G L  GR +H 
Sbjct: 192 LISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHR 251

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           ++E S  I ++ ++ TA+++MY KCGS+++A  VF  +  K +  WN MI G A+HG  K
Sbjct: 252 WVEQS-GITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCK 310

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           DA++LF+EM R  + P D+T + +L+ACAH G+V++G  +FN +   Y IEPK+EHYGCM
Sbjct: 311 DAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCM 370

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+L  RAG ++EA K++ DM +EPD  + G L GAC++H ++ LGE I   +I  +  NS
Sbjct: 371 VDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQNS 430

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G YVLL+N+ A+ G W  VA+VR LM E+ V KE G S IE+  +V EF  G L H + K
Sbjct: 431 GRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEK 490

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
           EI+  ++++   ++ EGY+P T  VLHDI E++K+  L+ HSEKLA+AFGL+ T+PG ++
Sbjct: 491 EIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTV 550

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I KNLRVC DCH   K IS+   R+I++RDRNRFHHF +GTCSC DYW
Sbjct: 551 RITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 301/480 (62%), Gaps = 30/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +KF    D YVS +L+ +Y                            +C+   G +  A
Sbjct: 153 ALKFGFATDQYVSNTLIHMY----------------------------SCFGG-GFLGDA 183

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +FD M ++  V W+ MI GY + GL+++A+ LFR M A  V+ +EVT + VL+A   +
Sbjct: 184 RNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDL 243

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE  RW+  ++E    I  +V +  ALI+  +KCG +  A  VF+ +  + VV W S+
Sbjct: 244 GALELARWVRRFVERE-GIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSV 302

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I   AM G GK+A+++F EM    + P D+ FIG+L+AC+HAG+V+EG  +F+ MK EY 
Sbjct: 303 IDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYG 362

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEPK+EHYGCMV++  RAG VE A + V  M I+P+ V+W +L+ ACR HG + LGE I 
Sbjct: 363 IEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESIT 422

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             L+ +  A+   Y++LSN++A    W   + +R  M ++G++K PGCS +EL  +VHEF
Sbjct: 423 RSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEF 482

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AGD  HP+ K+IY M+EE+   L+  G++  T  VL D+ E+ K+ +L+ HSEKLA+AF
Sbjct: 483 IAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAF 542

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ T PGT +++VKNLRVC DCHA  K IS+   R+I++RDR+RFH F +G+CSC D+W
Sbjct: 543 ALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 9/228 (3%)

Query: 71  DVVCWNVMIDGYAQ---HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI-GALESG 126
           D    N +I  +A    H L   A   F  ML   V PN+ T   +L AC  + G+ + G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGY 184
              H+          +  V   LI+MYS  G   L DAR VFDR+  +  V W++MI GY
Sbjct: 147 LQAHAAALKF-GFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGY 205

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
              G   DA++LF EM    ++  ++T IG+L+A    G + E  R+     +   I   
Sbjct: 206 VRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGAL-ELARWVRRFVEREGIGKS 264

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           V     +++ L++ G V+ A  +   M+ +   V W +++ A  + G 
Sbjct: 265 VTLCNALIDTLAKCGDVDGAVAVFEGMQ-QRSVVSWTSVIDALAMEGR 311


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/439 (46%), Positives = 297/439 (67%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT++  YA+ G V  A  +F+ M  ++VV W+ MI  YA++G A EAL  FR M+ E  
Sbjct: 220 MTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETK 279

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +  PN VT V+VL AC  + ALE GR IH YI   R +   + V +AL+ MY +CG L  
Sbjct: 280 DSSPNSVTMVSVLQACASLAALEQGRLIHGYILR-RGLDSILPVISALVTMYGRCGKLDV 338

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            + VFDR++D+DVV WNS+I  Y +HG+G+ A+Q+F EM      P+ +TF+ +L AC+H
Sbjct: 339 GQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSH 398

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            GLV EG+R F +M  ++ I+P+VEHY CMV+LL RA +++EA K+V DM+ EP   +WG
Sbjct: 399 EGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWG 458

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG+CR+HGN+ L E+ +  L +    N+G YVLL++IYA    WD V RV+ L++ +G
Sbjct: 459 SLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRG 518

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK PG   +E+  K++ F++ D  +P  ++I+  L ++   +K +GY+PQT+ VL+++ 
Sbjct: 519 LQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELE 578

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            ++K+  +  HSEKLA+AFGLI+T  G  I+I KNLR+C DCH   K ISKF  ++I++R
Sbjct: 579 TEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVR 638

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFH F NG CSCGDYW
Sbjct: 639 DVNRFHRFKNGVCSCGDYW 657



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 13/255 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+  G V  AR +FD   ++ +  WN +       G   E L L+ +M    VE
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175

Query: 105 PNEVTAVAVLSAC----GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   VL AC         L  G+ IH+++   R    +V + T L++MY++ G + 
Sbjct: 176 SDRFTYTYVLKACVASECTADHLTKGKEIHAHL-TRRGYNSHVYIMTTLVDMYARFGCVD 234

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSA 218
            A  VF+ +  ++VV W++MI  YA +G   +AL+ F EM        P+ +T + +L A
Sbjct: 235 YASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQA 294

Query: 219 CAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA    + +GR     +  +   +I P +     +V +  R G+++   + V D   + D
Sbjct: 295 CASLAALEQGRLIHGYILRRGLDSILPVI---SALVTMYGRCGKLDVGQR-VFDRMHDRD 350

Query: 277 SVLWGTLLGACRLHG 291
            V W +L+ +  +HG
Sbjct: 351 VVSWNSLISSYGVHG 365



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 132/307 (42%), Gaps = 45/307 (14%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I    + G   +AL    R+L+++  P++ T   ++  CG   +L  G  +H +I +
Sbjct: 50  NQLIQSLCKEGKLKQAL----RVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILD 105

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           + + + +  + T LI MYS  GS+  AR VFD+   + + VWN++     + G G++ L 
Sbjct: 106 NGSDQ-DPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164

Query: 196 LFNEMCRIRLKPSDITFIGLLSACA---------------HAGLVNEGRR----FFNTMK 236
           L+ +M RI ++    T+  +L AC                HA L   G         T+ 
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLV 224

Query: 237 DEYAIEPKVEH---------------YGCMVNLLSRAGQVEEAYKLVMDMKIE-----PD 276
           D YA    V++               +  M+   ++ G+  EA +   +M  E     P+
Sbjct: 225 DMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPN 284

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRT 335
           SV   ++L AC     +  G  I  Y++ + L +    +  L  +Y   G  D   RV  
Sbjct: 285 SVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFD 344

Query: 336 LMKEKGV 342
            M ++ V
Sbjct: 345 RMHDRDV 351


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 307/461 (66%), Gaps = 7/461 (1%)

Query: 26  VLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           ++  +++ A + +R   S    +TT++  YA+ G V  A  +F  M  ++VV W+ MI  
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257

Query: 82  YAQHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
           YA++G A EAL  FR M+ E  +  PN VT V+VL AC  + ALE G+ IH YI   R +
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR-RGL 316

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
              + V +AL+ MY +CG L+  + VFDR++D+DVV WNS+I  Y +HG+GK A+Q+F E
Sbjct: 317 DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE 376

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M      P+ +TF+ +L AC+H GLV EG+R F TM  ++ I+P++EHY CMV+LL RA 
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRAN 436

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
           +++EA K+V DM+ EP   +WG+LLG+CR+HGN+ L E+ +  L +    N+G YVLL++
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           IYA    WD V RV+ L++ +G+QK PG   +E+  K++ F++ D  +P  ++I+  L +
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVK 556

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           +   +K +GY+PQT+ VL+++  ++K+  +  HSEKLA+AFGLI+T  G  I+I KNLR+
Sbjct: 557 LAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRL 616

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K ISKF  ++I++RD NRFH F NG CSCGDYW
Sbjct: 617 CEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 149/315 (47%), Gaps = 23/315 (7%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+  G V  AR +FD   ++ +  WN +       G   E L L+ +M    VE
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175

Query: 105 PNEVTAVAVLSAC----GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   VL AC      +  L  G+ IH+++   R    +V + T L++MY++ G + 
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHL-TRRGYSSHVYIMTTLVDMYARFGCVD 234

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSA 218
            A  VF  +  ++VV W++MI  YA +G   +AL+ F EM R      P+ +T + +L A
Sbjct: 235 YASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQA 294

Query: 219 CAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA    + +G+     +  +   +I P +     +V +  R G++E   + V D   + D
Sbjct: 295 CASLAALEQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQR-VFDRMHDRD 350

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYAAIGN----WDGV 330
            V W +L+ +  +HG    G+K  + +  + LAN  S T V   ++  A  +     +G 
Sbjct: 351 VVSWNSLISSYGVHG---YGKKAIQ-IFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK 406

Query: 331 ARVRTLMKEKGVQKE 345
               T+ ++ G++ +
Sbjct: 407 RLFETMWRDHGIKPQ 421



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 45/307 (14%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I    + G   +A+    R+L+++  P++ T   ++  CG   +L     +H +I +
Sbjct: 50  NQLIQSLCKEGKLKQAI----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           + + + +  + T LI MYS  GS+  AR VFD+   + + VWN++     + G G++ L 
Sbjct: 106 NGSDQ-DPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164

Query: 196 LFNEMCRIRLKPSDITFIGLLSACA---------------HAGLVNEGRR----FFNTMK 236
           L+ +M RI ++    T+  +L AC                HA L   G         T+ 
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLV 224

Query: 237 DEYAIEPKVEH---------------YGCMVNLLSRAGQVEEAYKLVMDMKIE-----PD 276
           D YA    V++               +  M+   ++ G+  EA +   +M  E     P+
Sbjct: 225 DMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPN 284

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRT 335
           SV   ++L AC     +  G+ I  Y++ + L +    +  L  +Y   G  +   RV  
Sbjct: 285 SVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFD 344

Query: 336 LMKEKGV 342
            M ++ V
Sbjct: 345 RMHDRDV 351


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/438 (45%), Positives = 292/438 (66%), Gaps = 2/438 (0%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +L  M +C+   G +  AR +FD M ++  V W+ MI GY + GL+++A+ LFR M A  
Sbjct: 167 TLIHMYSCFGG-GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANG 225

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V+ +EVT + VL+A   +GALE  RW+  ++E    I  +V +  ALI+  +KCG +  A
Sbjct: 226 VQADEVTVIGVLAAATDLGALELARWVRRFVERE-GIGKSVTLCNALIDTLAKCGDVDGA 284

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  + VV W S+I   AM G GK+A+++F EM    + P D+ FIG+L+AC+HA
Sbjct: 285 VAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHA 344

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+V+EG  +F+ MK EY IEPK+EHYGCMV++  RAG VE A + V  M I+P+ V+W +
Sbjct: 345 GMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRS 404

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           L+ ACR HG + LGE I   L+ +  A+   Y++LSN++A    W   + +R  M ++G+
Sbjct: 405 LVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGI 464

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCS +EL  +VHEF+AGD  HP+ K+IY M+EE+   L+  G++  T  VL D+ E
Sbjct: 465 KKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDE 524

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L+ HSEKLA+AF L+ T PGT +++VKNLRVC DCHA  K IS+   R+I++RD
Sbjct: 525 EDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRD 584

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R+RFH F +G+CSC D+W
Sbjct: 585 RSRFHRFKDGSCSCKDFW 602



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 71  DVVCWNVMIDGYAQ---HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI-GALESG 126
           D    N +I  +A    H L   A   F  ML   V PN+ T   +L AC  + G+ + G
Sbjct: 87  DAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVG 146

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGY 184
              H+          +  V   LI+MYS  G   L DAR VFDR+  +  V W++MI GY
Sbjct: 147 LQAHAAALKF-GFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGY 205

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
              G   DA+ LF EM    ++  ++T IG+L+A    G + E  R+     +   I   
Sbjct: 206 VRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGAL-ELARWVRRFVEREGIGKS 264

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           V     +++ L++ G V+ A  +   M+ +   V W +++ A  + G 
Sbjct: 265 VTLCNALIDTLAKCGDVDGAVAVFEGMQ-QRSVVSWTSVIDALAMEGR 311



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 1/151 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           +S+     ++   AK G+V  A  +F+ M+++ VV W  +ID  A  G   EA+ +F  M
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
               V P++V  + VL+AC   G ++ G      ++    I+  ++    +++M+ + G 
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGM 382

Query: 159 LKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
           ++ A   V       + V+W S++     HG
Sbjct: 383 VERAMEFVRTMPIQPNPVIWRSLVSACRAHG 413


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/436 (45%), Positives = 283/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  YAK G    A  +F+ M +KDV+ W  ++ G   +G   EAL LF  M    + 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+++   AVLSAC ++  LE G+ +H+    S  +  ++ V  +L++MY+KCG ++DA  
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIEDANK 124

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +DV+ W ++IVGYA +G G+++L  +N+M    +KP  ITFIGLL AC+HAGL
Sbjct: 125 VFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGL 184

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V  GR +F +M++ Y I+P  EHY CM++LL R+G++ EA +L+  M ++PD+ +W  LL
Sbjct: 185 VEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALL 244

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+HGN+ LGE+ A  L      N+  YVLLSN+Y+A G W+  A+ R LMK +GV K
Sbjct: 245 AACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSK 304

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS IE+S+KVH F++ D  HP++ EIY  ++EI   +K  GYVP     LHD+ E+ 
Sbjct: 305 EPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEG 364

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLAVAFGL++  PG  I+I KNLR+C DCH   K +S    R +++RD N
Sbjct: 365 KELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSN 424

Query: 465 RFHHFVNGTCSCGDYW 480
            FHHF  G CSC DYW
Sbjct: 425 CFHHFREGACSCSDYW 440



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 123/308 (39%), Gaps = 79/308 (25%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATM------PQR--------------------- 39
           DKD+   TSLV      G    A +LF  M      P +                     
Sbjct: 30  DKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQ 89

Query: 40  ------------SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
                       SL    ++++ YAK G +  A  +FD ME +DV+ W  +I GYAQ+G 
Sbjct: 90  VHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGR 149

Query: 88  ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
             E+L  +  M+A  V+P+ +T + +L AC   G +E GR     +E    IK   +   
Sbjct: 150 GRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYA 209

Query: 148 ALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
            +I++  + G L +A+ + +++    D  VW +                           
Sbjct: 210 CMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA--------------------------- 242

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAY 265
                   LL+AC   G V  G R  N +   + +EPK    Y  + NL S AG+ EEA 
Sbjct: 243 --------LLAACRVHGNVELGERAANNL---FELEPKNAVPYVLLSNLYSAAGKWEEAA 291

Query: 266 KLVMDMKI 273
           K    MK+
Sbjct: 292 KTRRLMKL 299



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 4/141 (2%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V  AL++MY+K G    A  VF+++ DKDV+ W S++ G   +G  ++AL+LF EM  + 
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           + P  I    +LSACA   ++  G++   N +K        V++   +V++ ++ G +E+
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDN--SLVSMYAKCGCIED 121

Query: 264 AYKLVMDMKIEPDSVLWGTLL 284
           A K+   M+I+ D + W  L+
Sbjct: 122 ANKVFDSMEIQ-DVITWTALI 141


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/452 (46%), Positives = 289/452 (63%), Gaps = 2/452 (0%)

Query: 30  EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
           E++  T     +     ++  YAK G V  AR +FD +  +D V WN MI  Y Q+G   
Sbjct: 187 ERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPM 246

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           EAL L R M A  V P   T V+ +SA     AL  GR +H +    R      ++ T+L
Sbjct: 247 EALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGF-GWRRGFDRQDKLKTSL 305

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPS 208
           ++MY+K G ++ AR++F+++  +++V WN+MI GY MHG   +AL+LFN+M    ++ P 
Sbjct: 306 VDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPD 365

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +ITF+G+LSAC H G+V E + FF  M D Y+I+P V+H+ C+V++L  AG+ EEAY L+
Sbjct: 366 NITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLI 425

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
             M ++PDS +WG LL  C++H N+ LGE   + LI     ++G YVLLSNIYA  G W+
Sbjct: 426 KGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWE 485

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
             ARVR LM  +G++K  GCS IEL  K H FL GD  HP+S EIY  LE + G +   G
Sbjct: 486 KAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAG 545

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           Y+P T  V HD+G+ +K+N +  HSE+LA+AFGLIST  GT + + KNLRVC DCH V K
Sbjct: 546 YMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIK 605

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIS+   R+I++RD NR+HHFVNG CSC DYW
Sbjct: 606 LISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 36/283 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YA  G V  AR LFD M +++V  WNV+I  YA+ G    A+ L+R M+   VE
Sbjct: 101 TKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVE 160

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T    L AC  +  LE+GR +H  +  + +   ++ V   L++MY+KCG + DAR 
Sbjct: 161 PDNFTYPLALKACAALLDLETGREVHERVLGT-HWGEDMFVCAGLVDMYAKCGCVDDARA 219

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+  +D VVWNSMI  Y  +G   +AL L  +M    + P+  T +  +SA A A  
Sbjct: 220 VFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAA 279

Query: 225 VNEG--------RRFFN-------TMKDEYA---------------IEPKVEHYGCMVNL 254
           +  G        RR F+       ++ D YA               ++ ++  +  M+  
Sbjct: 280 LPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICG 339

Query: 255 LSRAGQVEEAYKLVMDMKIE----PDSVLWGTLLGACRLHGNI 293
               G  +EA KL   M++E    PD++ +  +L AC  HG +
Sbjct: 340 YGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACN-HGGM 381



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 41/217 (18%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            D+   + TSLVD+YA+ G V  A  LF  + +R LVS   M+                 
Sbjct: 295 FDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMIC---------------- 338

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALE 124
                          GY  HG  +EAL LF +M  E +V P+ +T V VLSAC   G ++
Sbjct: 339 ---------------GYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVK 383

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG 183
             +     + +  +IK  VQ  T L+++    G  ++A  L+       D  +W +++ G
Sbjct: 384 EAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNG 443

Query: 184 YAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             +H     G+ ALQ       I L+P D     LLS
Sbjct: 444 CKIHKNVELGELALQKL-----IELEPEDAGNYVLLS 475


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/449 (47%), Positives = 289/449 (64%), Gaps = 13/449 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L  +L C     +    R LF  +++ ++  WN MI G   +   ++A+  +  M +E  
Sbjct: 49  LNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF 108

Query: 104 EPNEVTAVAVLSACGQIGALESG---------RWIHSYIENSRNIKVNVQVGTALINMYS 154
            PN  T   VL AC ++  L+ G          WIH  I     ++ NV VGT+L++MY+
Sbjct: 109 LPNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVR-NVFVGTSLVDMYA 167

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDIT 211
           KCG+++ AR VFD + +KD+V W +MI GYA++G  K+A+ LF +M R   + +KP   T
Sbjct: 168 KCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNT 227

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           FIGLL  C HAGLV+EGRR+FN+M   +++ P +EHYGCMV+LL RAG ++EA++L+ +M
Sbjct: 228 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 287

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
            +E ++++WG LLGACR+H +  L E   + LI     NSG YVLLSNIY+A   WD  A
Sbjct: 288 PMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAA 347

Query: 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
           +VR  M EK +QK PGCS IE+   VHEFL GD  HP S++IY  L+E+   +K  GYVP
Sbjct: 348 KVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVP 407

Query: 392 QTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLIS 451
            T  VL DI E++K++ L  HSEKLA+AFGLIS  P   I++VKNLRVC DCH   KLIS
Sbjct: 408 TTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLIS 467

Query: 452 KFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             TGR+I +RD NRFH F  G+CSC DYW
Sbjct: 468 SITGREITVRDNNRFHCFREGSCSCNDYW 496



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 35/184 (19%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           ++++V TSLVD+YA+ G++  A  +F  MP++ +VS   M                    
Sbjct: 154 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAM-------------------- 193

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK---VEPNEVTAVAVLSACGQIGALE 124
                      I GYA +GL  EA+ LF +M  E    ++P+  T + +L  C   G ++
Sbjct: 194 -----------IQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVD 242

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG 183
            GR   + +    ++  +++    ++++  + G L +A +L+ +   + + +VW +++  
Sbjct: 243 EGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 302

Query: 184 YAMH 187
             +H
Sbjct: 303 CRIH 306


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/467 (45%), Positives = 297/467 (63%), Gaps = 1/467 (0%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
            +++  Y   GD+  A++LF   P RS+V+ T M+T + K G++  A   F++M  K++V
Sbjct: 134 NAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLV 193

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN MI GY ++  A   L LF+RM+     PN  +  +VL  C  + AL+ G+ +H  I
Sbjct: 194 TWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLI 253

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             S  +  N+  GT+L++MY KCG L+DA  +F  +  KDVV WN+MI GYA HG G+ A
Sbjct: 254 CKS-PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKA 312

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L LF++M    +KP  ITF+ +LSAC HAG V+ G  +FN+M  +Y +E K +HY C+V+
Sbjct: 313 LYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVD 372

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL R G++ EA  L+  M  +P S ++GTLLGACR+H N+ L E  A+ L++ +  ++  
Sbjct: 373 LLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAG 432

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YV L+N+YAA+  WD VA VR  MK+  V K PG S IE+ + VHEF +GD  HP+   I
Sbjct: 433 YVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFI 492

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKI 433
           +  L E+   ++  GYVP  +  LHD+GE+QK+  L  HSEKLA+A+GLI    GT I++
Sbjct: 493 HEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRV 552

Query: 434 VKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            KNLRVC DCH+  K IS   GR I++RD  RFHHF  G CSCGDYW
Sbjct: 553 FKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 161/332 (48%), Gaps = 23/332 (6%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           R G +  A +LF  +P+  + S   ML CY    +V +AR+ FD M  KD   WN MI G
Sbjct: 49  RRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISG 108

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           ++Q+G+ ++A  LF  M       N V+  A++S   + G L+  + +   +   R    
Sbjct: 109 FSQNGMMDQARELFLVMPVR----NSVSWNAMISGYVESGDLDLAKQLFE-VAPVR---- 159

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V   TA+I  + K G ++ A   F+ +  K++V WN+MI GY  +   ++ L+LF  M 
Sbjct: 160 SVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMV 219

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
               +P+  +   +L  C++   +  G++    +     +   +     ++++  + G +
Sbjct: 220 ESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKS-PVSWNITAGTSLLSMYCKCGDL 278

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG------TYV 315
           E+A+KL + M  + D V W  ++     HG    GEK A YL  + + + G      T+V
Sbjct: 279 EDAWKLFLVMP-QKDVVTWNAMISGYAQHG---AGEK-ALYLFDK-MRDEGMKPDWITFV 332

Query: 316 LLSNIYAAIGNWD-GVARVRTLMKEKGVQKEP 346
            + +     G  D G+    +++++ GV+ +P
Sbjct: 333 AVLSACNHAGFVDLGIEYFNSMVRDYGVEAKP 364



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGKDALQLFNEM 200
           NV     +I  + + G L  A  VF+ +  K  V WNSM+ GY+   G  K A QLF+  
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFD-- 61

Query: 201 CRIRLKPSDITFIGLLSAC-AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
              R+   DI    ++ AC  H   V   R FF+ M  +         +  M++  S+ G
Sbjct: 62  ---RIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVK-----DTASWNTMISGFSQNG 113

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            +++A +L + M +  +SV W  ++      G++ L +++ E
Sbjct: 114 MMDQARELFLVMPVR-NSVSWNAMISGYVESGDLDLAKQLFE 154


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 301/440 (68%), Gaps = 18/440 (4%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           + +  ++L  Y+K G++ +AR+LFD ++++D                  EAL LF RM  
Sbjct: 153 IYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHRMQT 195

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++ + V  V+ L AC  +G L+ G+WIH+YI+    I+++  +G  LI+MY+KCG L+
Sbjct: 196 AGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK-HEIEIDPILGCVLIDMYAKCGDLE 254

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A  VF ++ +K V VW +MI GYA+HG G++AL+ F +M    ++P+ +TF G+L+AC+
Sbjct: 255 EAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 314

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           HAGLV+E +  F +M+  +  +P +EHYGCMV+LL RAG ++EA +L+ +M ++P++ +W
Sbjct: 315 HAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIW 374

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LL AC +HGN+ LG++I + LI  +  + G Y+ L++I+AA G W+  ARVR  MKE+
Sbjct: 375 GALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 434

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV K PGCS I ++   HEFLAGD  HP+ KEI  MLE+I   L+ EGY P+   +L D+
Sbjct: 435 GVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDL 494

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +K+K+ ++  HSEKLAV FGLIST+PG +I+IVKNLRVC DCH V KLISK   R+I+M
Sbjct: 495 EDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILM 554

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDR RFH F +G C+CGDYW
Sbjct: 555 RDRTRFHLFKDGNCTCGDYW 574



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 135/288 (46%), Gaps = 31/288 (10%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G +L    +   +P   L++           G +A AR +FD +   +   WN MI GY+
Sbjct: 39  GQMLKTGLILDEIPASKLLAFCA----SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
                 EAL+L+  ML   V  N  T   +L AC  + ALE  + IH++I         +
Sbjct: 95  NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHI-IKMGFGSEI 153

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
               +L+N+YSK G +K ARL+FD+V+ +D                  +AL LF+ M   
Sbjct: 154 YTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHRMQTA 196

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD-EYAIEPKVEHYGC-MVNLLSRAGQV 261
            +K  ++  +  L ACA  G++++G+     +K  E  I+P +   GC ++++ ++ G +
Sbjct: 197 GIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GCVLIDMYAKCGDL 253

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           EEA ++   M+ E    +W  ++    +HG    G +  E+ +    A
Sbjct: 254 EEAIEVFRKME-EKGVSVWTAMISGYAIHGR---GREALEWFMKMQTA 297



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 125/295 (42%), Gaps = 63/295 (21%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----------------- 44
           +K     ++Y + SL+++Y++ GD+ SA  LF  + QR   +L                 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNVA 204

Query: 45  --TTMLTC----------------------------------YAKQGEVAAARVLFDDME 68
             +T+  C                                  YAK G++  A  +F  ME
Sbjct: 205 LVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME 264

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           EK V  W  MI GYA HG   EAL  F +M    VEPN++T   +L+AC   G +   + 
Sbjct: 265 EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKL 324

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
           +   +E     K +++    ++++  + G LK+A  + + +  K +  +W +++    +H
Sbjct: 325 LFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIH 384

Query: 188 G---FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           G    GK   ++      I++ P     +I L S  A AG  N+  R    MK++
Sbjct: 385 GNLELGKQIGKIL-----IQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQ 434


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/483 (42%), Positives = 311/483 (64%), Gaps = 9/483 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS-----LVSLTTMLTCYAKQGEVAAA 60
           +  D+    SL    A+ GD+     +   M +R      +++   ++  YAK  ++ AA
Sbjct: 267 VSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAA 326

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQ 119
           + +FD M  +D V WN +I GY Q+GLA+EA+ ++  M   E ++P + T V+VL A   
Sbjct: 327 QRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSH 386

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G  +H+ +     + ++V VGT +I++Y+KCG L +A L+F++   +    WN+
Sbjct: 387 LGALQQGTRMHA-LSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNA 445

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I G  +HG G  AL LF++M +  + P  +TF+ LL+AC+HAGLV++GR FFN M+  Y
Sbjct: 446 VISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAY 505

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P  +HY CMV++  RAGQ+++A+  + +M I+PDS +WG LLGACR+HGN+ +G+  
Sbjct: 506 GIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVA 565

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           ++ L   +  N G YVL+SN+YA +G WDGV  VR+L++ + +QK PG SSIE+   V+ 
Sbjct: 566 SQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNV 625

Query: 360 FLAGDLR--HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           F +G+    HP+ +EI   L ++   +++ GYVP    VL D+ E +K+  L  HSE+LA
Sbjct: 626 FYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLA 685

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFG+I+T P T + I KNLRVC DCH   K ISK T R+I++RD NRFHHF +G CSCG
Sbjct: 686 IAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCG 745

Query: 478 DYW 480
           D+W
Sbjct: 746 DFW 748



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 133/255 (52%), Gaps = 3/255 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L     M+  Y K G +   R +FD M  +D+V WN +I G+ Q G    A+ +F  M  
Sbjct: 205 LFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRD 264

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+ +T +++ SA  Q G +  GR +H Y+        ++  G A+++MY+K   ++
Sbjct: 265 SGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIE 324

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSAC 219
            A+ +FD +  +D V WN++I GY  +G   +A+ +++ M +   LKP   TF+ +L A 
Sbjct: 325 AAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAY 384

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H G + +G R  + +  +  +   V    C+++L ++ G+++EA  L+ +      +  
Sbjct: 385 SHLGALQQGTR-MHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAM-LLFEQTPRRSTGP 442

Query: 280 WGTLLGACRLHGNIA 294
           W  ++    +HG+ A
Sbjct: 443 WNAVISGVGVHGHGA 457



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y + G V  A   FD+M  +DV  WN M+ G  ++  A EA+ LF RM+ E V  
Sbjct: 109 ALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAG 168

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT  +VL  C  +G       +H Y      +   + V  A+I++Y K G L++ R V
Sbjct: 169 DAVTVSSVLPMCVLLGDRALALAMHLYAVK-HGLDDELFVCNAMIDVYGKLGMLEEVRKV 227

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD ++ +D+V WNS+I G+   G    A+++F  M    + P  +T + L SA A  G +
Sbjct: 228 FDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDI 287

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             GR     M         +     +V++ ++  ++E A ++   M +  D+V W TL+ 
Sbjct: 288 CGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLIT 346

Query: 286 ACRLHGNIALGEKIAEYLISQNLANS--GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
               +G  +    + +++          GT+V +   Y+ +G      R+  L  + G+
Sbjct: 347 GYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGL 405



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 46/224 (20%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K  L+ D+YV T ++DLYA+ G +  A  LF   P+RS      +++           
Sbjct: 400 SIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVIS----------- 448

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               G   HG   +AL LF +M  E + P+ VT V++L+AC   
Sbjct: 449 --------------------GVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHA 488

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVV 176
           G ++ GR   + ++ +  IK   +    +++M+ + G L DA   FD + +     D  +
Sbjct: 489 GLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDA---FDFIRNMPIKPDSAI 545

Query: 177 WNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           W +++    +HG    GK A Q   E     L P ++ +  L+S
Sbjct: 546 WGALLGACRIHGNVEMGKVASQNLFE-----LDPKNVGYYVLMS 584


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/438 (46%), Positives = 290/438 (66%), Gaps = 5/438 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
           TT+L  YAK G++  A+ LFD+M + D+  WN +I G+AQ     +A++ F+RM  +  +
Sbjct: 142 TTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNL 201

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN VT    L AC Q+GAL+ G  +H YI   + +  NVQV   +I+MY+KCGS+  A 
Sbjct: 202 RPNAVTVQGALLACSQLGALKEGESVHKYIVEEK-LDSNVQVCNVVIDMYAKCGSMDKAY 260

Query: 164 LVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            VF+ +  DK ++ WN+MI+ +AMHG G  AL LF ++ R  + P  ++++ +L AC HA
Sbjct: 261 WVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHA 320

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV +G + FN+M  +  +EP ++HYG MV+LL RAG+++EAY +V  +   P+ VLW T
Sbjct: 321 GLVEDGLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQT 378

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR +G++ + E  +  L+     + G +VLLSN+YAA   WD V RVR  M+ + V
Sbjct: 379 LLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDV 438

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PG S IE+  K+++F+ GD  H   +EIY  L+EIN  +KA GY   T  VLHDIG+
Sbjct: 439 KKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGD 498

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+N+L  HSEKLAVAFGL  T+ GT I+++KNLR+C DCH V KLISK   R+I++RD
Sbjct: 499 EDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRD 558

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFH F  G CSC DYW
Sbjct: 559 RTRFHRFKEGLCSCKDYW 576


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/438 (46%), Positives = 290/438 (66%), Gaps = 5/438 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
           TT+L  YAK G++  A+ LFD+M + D+  WN +I G+AQ     +A++ F+RM  +  +
Sbjct: 142 TTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNL 201

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN VT    L AC Q+GAL+ G  +H YI   + +  NVQV   +I+MY+KCGS+  A 
Sbjct: 202 RPNAVTVQGALLACSQLGALKEGESVHKYIVEEK-LNSNVQVCNVVIDMYAKCGSMDKAY 260

Query: 164 LVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            VF+ +  DK ++ WN+MI+ +AMHG G  AL LF ++ R  + P  ++++ +L AC HA
Sbjct: 261 WVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHA 320

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV +G + FN+M  +  +EP ++HYG MV+LL RAG+++EAY +V  +   P+ VLW T
Sbjct: 321 GLVEDGLKLFNSMT-QRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQT 378

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR +G++ + E  +  L+     + G +VLLSN+YAA   WD V RVR  M+ + V
Sbjct: 379 LLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDV 438

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PG S IE+  K+++F+ GD  H   +EIY  L+EIN  +KA GY   T  VLHDIG+
Sbjct: 439 KKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGD 498

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+N+L  HSEKLAVAFGL  T+ GT I+++KNLR+C DCH V KLISK   R+I++RD
Sbjct: 499 EDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRD 558

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFH F  G CSC DYW
Sbjct: 559 RTRFHRFKEGLCSCKDYW 576


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/472 (45%), Positives = 294/472 (62%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V   L+  Y+  G +  A K+F   P+  +++   +L  YA+  +  A R  F  M  +D
Sbjct: 112 VRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARD 171

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIH 130
            V WN +I     +G   EA+ +FR MLA  + +P+ VT V+V+SA   +GAL  G W H
Sbjct: 172 SVSWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAH 231

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVVWNSMIVGYAMHGF 189
           +Y+   + I+V+ ++ +ALINMYSKCG ++ A  VF+     + V  WN+M+ G+   G 
Sbjct: 232 AYV-CRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGC 290

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
            + AL+LF  M      P+ ITF  LL+AC+H G V EG  +F  M +  +IEP + HYG
Sbjct: 291 SERALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYG 350

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           CMV+L  RAG  E+A +++  M +EPD+ +W  L+GACR + N  LG+K    LI     
Sbjct: 351 CMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPN 410

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           +   YVLLSNIYA  GNW GV +VR LM   GVQK PG SSIEL   +HEF++GD  H +
Sbjct: 411 DHAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSR 470

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQPG 428
            +++Y ML EI   LK  GY P T  VL DI ++  K++SL +HSE+LA+AFGLIST PG
Sbjct: 471 KRDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPG 530

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T I+IVKNLRVC DCH   KL+SK  GR IM+RD NRFH F  G+CSCGDYW
Sbjct: 531 TPIRIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL LF  +L    +P+ +     L+ C +  A  +   +H +    R    + +V   LI
Sbjct: 59  ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAK-RGAASHRRVRNGLI 117

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM------------------------ 186
           + YS CG L DAR VFD   + D++ WN ++ GYA                         
Sbjct: 118 HAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNT 177

Query: 187 -------HGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGR-RFFNTMKD 237
                  +G  ++A+ +F EM      +P  +T + ++SA A+ G + +G        + 
Sbjct: 178 VIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRK 237

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           E  ++ K+     ++N+ S+ G +E A
Sbjct: 238 EIEVDEKLS--SALINMYSKCGFIEGA 262


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/499 (41%), Positives = 296/499 (59%), Gaps = 33/499 (6%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T+++  YA+ G V+ A KLF  MP R+ VS T ML  Y + G V  A  LF+ M +  V 
Sbjct: 209 TAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVA 268

Query: 74  CWNVMIDGYAQHGLAN-------------------------------EALVLFRRMLAEK 102
             N M+ G+ QHG+ +                               EAL  FR ML   
Sbjct: 269 ACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRG 328

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + PN  + +++L+ C  +   + GR +H+ +    +   +V   +ALI MY KCG+L  A
Sbjct: 329 IRPNYTSFISILTVCAALATADYGRELHAAMLRC-SFDTDVFAVSALITMYIKCGNLDKA 387

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VF+    KDVV+WNSMI GYA HG G++AL +F+++   R+ P  IT+IG+L+AC++ 
Sbjct: 388 KRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYT 447

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G V EGR  FN+M    +I     HY CMV+LL RAG V+EA  L+ +M +EPD+++WG 
Sbjct: 448 GKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGA 507

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           L+GACR+H N  + E  A+ L+     ++G YVLLS+IY + G W+  + +R  +  + +
Sbjct: 508 LMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNL 567

Query: 343 QKEPGCSSIELSNKVHEFLAGD-LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
            K PGCS IE +  VH F +GD L HP+   I  MLEE++G L   GY      VLHD+ 
Sbjct: 568 NKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVD 627

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E+QK  SL  HSE+ AVA+GL+    G  I+++KNLRVC DCH+  KLI+K T R+I++R
Sbjct: 628 EEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILR 687

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSC DYW
Sbjct: 688 DANRFHHFKDGLCSCRDYW 706



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 14/285 (4%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T L+  +   G V  A KLF  MP + +V+ T ML+ Y + G +  AR LFD+M +++VV
Sbjct: 147 TVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W  MI GYAQ+G     ++L R++     + NEV+  A+L    Q G +E    + + +
Sbjct: 207 SWTAMISGYAQNG----KVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAM 262

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
            +       V    A++  + + G +  A+ +F+R+  +D   W++MI  Y  + F  +A
Sbjct: 263 PDH-----PVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEA 317

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L  F EM    ++P+  +FI +L+ CA     + GR     M    + +  V     ++ 
Sbjct: 318 LSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAML-RCSFDTDVFAVSALIT 376

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           +  + G +++A K V +M    D V+W +++     HG   LGE+
Sbjct: 377 MYIKCGNLDKA-KRVFNMFEPKDVVMWNSMITGYAQHG---LGEE 417



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 26/303 (8%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           R G++  A   F  MP R+  S   ++  Y +     AA  LF  M  +D+  +N +I G
Sbjct: 29  RAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAG 88

Query: 82  YA--QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG-RWIHSYIENSRN 138
            +  +H L + A  L     +  + P+ V+  ++L    + G L    R  H   E    
Sbjct: 89  LSLRRHTLPDAAAAL----ASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPER--- 141

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
              N    T L+  +   G + +AR +FD + DKDVV   +M+ GY   G   +A  LF+
Sbjct: 142 ---NHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFD 198

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           EM     K + +++  ++S  A  G V   R+ F  M D   +      +  M+    +A
Sbjct: 199 EMP----KRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVS-----WTAMLVGYIQA 249

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318
           G VE+A  L   M   P +     ++G  + HG +   + + E + ++   + GT+  + 
Sbjct: 250 GHVEDAEDLFNAMPDHPVAACNAMMVGFGQ-HGMVDAAKAMFERMCAR---DDGTWSAMI 305

Query: 319 NIY 321
            +Y
Sbjct: 306 KVY 308



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 89/187 (47%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++ S D D++  ++L+ +Y + G++  A+++F     + +V   +M+T YA         
Sbjct: 360 LRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYA--------- 410

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                 QHGL  EAL +F  +   ++ P+ +T + VL+AC   G
Sbjct: 411 ----------------------QHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTG 448

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ GR I + +  + +I++     + ++++  + G + +A  L+ +   + D ++W ++
Sbjct: 449 KVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGAL 508

Query: 181 IVGYAMH 187
           +    MH
Sbjct: 509 MGACRMH 515


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/474 (42%), Positives = 312/474 (65%), Gaps = 3/474 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +YV  +++D+Y + G ++ A K+F  MP+R ++S T ++  YA+ G + +A  LF+ +  
Sbjct: 185 VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPT 244

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE-SGRW 128
           KD+V W  M+ G+AQ+    EAL  F RM    +  +EVT    +SAC Q+GA + + R 
Sbjct: 245 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 304

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +    ++  +   +V +G+ALI+MYSKCG++++A  VF  +N+K+V  ++SMI+G A HG
Sbjct: 305 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHG 364

Query: 189 FGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
             ++AL LF+ M  +  +KP+ +TF+G L+AC+H+GLV++GR+ F +M   + +EP  +H
Sbjct: 365 RAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDH 424

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL RAG+++EA +L+  M +EP   +WG LLGACR+H N  + E  AE+L    
Sbjct: 425 YTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELE 484

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS-SIELSNKVHEFLAGDLR 366
               G Y+LLSN+Y++ G+W GV  VR L+KEKG++K P  S  ++ + ++H+F  G+L 
Sbjct: 485 PDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLN 544

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP SK+I   LEE+   L A GY P    V +D+ +  K+  L  H+EKLA+AF L++T 
Sbjct: 545 HPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTN 604

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              +IKI+KNLR+C DCH   +L S+ TGR I+MRD  RFHHF +G CSCGD+W
Sbjct: 605 RDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 128/294 (43%), Gaps = 34/294 (11%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R + + ++ ++   W  +I GY   G  +EA+ ++  M  E++ P   T  A+L ACG +
Sbjct: 104 RRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSM 163

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV------ 174
           G L  GR  H+     R     V VG  +I+MY KCGS+  AR VFD + ++DV      
Sbjct: 164 GDLNLGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTEL 222

Query: 175 -------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
                                    V W +M+ G+A +   ++AL+ F+ M +  ++  +
Sbjct: 223 IAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 282

Query: 210 ITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +T  G +SACA  G      R      K  Y+    V     ++++ S+ G VEEA  + 
Sbjct: 283 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVF 342

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
           + M    +   + +++     HG       +  Y+++Q      T   +  + A
Sbjct: 343 VSMN-NKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTA 395



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 32/160 (20%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           +S    + + ++L+D+Y++ G+V  A  +F +M  +++ S ++                 
Sbjct: 313 YSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSS----------------- 355

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGA 122
                         MI G A HG A EAL LF  M+ +  ++PN VT V  L+AC   G 
Sbjct: 356 --------------MILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGL 401

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           ++ GR + + +  +  ++      T ++++  + G L++A
Sbjct: 402 VDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEA 441


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/445 (48%), Positives = 292/445 (65%), Gaps = 14/445 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----- 98
           LTT+L  YAK G++A+AR +FD+M  +DV  WN ++ G AQ    N AL LF R+     
Sbjct: 151 LTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQ 210

Query: 99  -LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
            L  + EPNEVT VAVLSAC QIG L+ G ++H + +    +  NV+V  +LI+MYSKCG
Sbjct: 211 ELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKF-GLDRNVRVCNSLIDMYSKCG 269

Query: 158 SLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           SL  A  VF  +   D+ +V +N+ I  ++MHG G DAL+LF+EM   R++P  +T++ +
Sbjct: 270 SLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAV 328

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L  C H+GLV++G R FN+M+    + P ++HYG +V+LL RAG++ EAY  V+ M    
Sbjct: 329 LCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPA 384

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D VLW TLLGA ++HG + L E  A  L        G YVLLSN+YA+   W  V RVR 
Sbjct: 385 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 444

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M+   V+K PG S  E+   +H+F+ GD  HP+ +EIY  LE+I   +   GY P+T  
Sbjct: 445 TMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSN 504

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHDIGE++KQ +L  HSEKLA+AFGLI+T PG +++++KNLR+C DCH V KLISK  G
Sbjct: 505 VLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYG 564

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R I++RDR RFH F +G CSC DYW
Sbjct: 565 RVIVIRDRARFHRFEDGQCSCRDYW 589


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/481 (42%), Positives = 306/481 (63%), Gaps = 7/481 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG---EVAAARV 62
           LD ++ V+T+LV++YA+ G +  A K+F  M  R  V+ +T++  YA  G   +   AR 
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIG 121
           +FD +  +D +CWN MI  Y Q+G A  A+ +FR M  A  ++P+ VT +AVL AC  +G
Sbjct: 399 VFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L   + +H+ I  S  ++ NV V   LINMY++CGSL++A  +F    +K VV W +M+
Sbjct: 459 RLSEVKALHAQISES-ELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMV 517

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             ++ +G   +AL LF EM    +KP D+T+  +L  C H G + +G R+F  M + + +
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGL 577

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P  +H+  MV+LL R+G++ +A +L+  M  EPD V W T L ACR+HG + LGE  AE
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +   + +++  Y+ +SNIYAA G W+ VA VR  M+E+G++K PG S IE+  K+HEF 
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +G   HP++ EI   L  ++G ++A GYVP T+ VLHD+ E +K+  L  HSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757

Query: 422 LISTQ-PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF-VNGTCSCGDY 479
           L+S++  G  I++VKNLRVC DCH   K I++  GR I++RD NRFH F  +G CSCGDY
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDY 817

Query: 480 W 480
           W
Sbjct: 818 W 818



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 152/289 (52%), Gaps = 38/289 (13%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV  T ++  Y K G    AR +FD M+++D+V WNVMI  Y Q+G  +EAL L++++  
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDM 301

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E  +  + T V++L AC  + AL  GR +HS+I   R +   V V TAL+NMY+KCGSL+
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILE-RGLDSEVAVATALVNMYAKCGSLE 360

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD---------------------------- 192
           +AR VF+ + ++D V W+++I  YA +G+GKD                            
Sbjct: 361 EARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQ 420

Query: 193 ------ALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
                 A+++F EM     LKP  +TFI +L ACA  G ++E +     +  E  +E  V
Sbjct: 421 NGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS-ESELESNV 479

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
                ++N+ +R G +EEA +L    K E   V W  ++ A   +G  A
Sbjct: 480 VVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYA 527



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 142/266 (53%), Gaps = 9/266 (3%)

Query: 30  EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGL 87
           E++  +  +R  +    +++ Y K   +  AR +F+ M+  +++VV WN MI  YAQ+G 
Sbjct: 31  ERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGH 90

Query: 88  ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
           + EALVL+ RM  + +  + VT V+VL AC    +L  GR IH+ +  S  +     +  
Sbjct: 91  STEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGREIHNRVFYS-GLDSFQSLAN 146

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL+ MY++ GS+ DA+ +F  +  +D   WN++I+ ++  G    AL++F EM +  +KP
Sbjct: 147 ALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKP 205

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           +  T+I ++S  +   ++ EGR+    +      +  +     ++N+  + G   EA ++
Sbjct: 206 NSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDSDLVVATALINMYGKCGSSHEAREV 264

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNI 293
              MK + D V W  ++G    +G+ 
Sbjct: 265 FDKMK-KRDMVSWNVMIGCYVQNGDF 289


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/479 (42%), Positives = 304/479 (63%), Gaps = 33/479 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK+    D+YV ++L+D+YAR                           C    G +  A
Sbjct: 191 TVKYDWHDDVYVGSALLDMYAR---------------------------C----GRMDMA 219

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +FD +E K+ V WN +I G+A+ G     L++F  M     E    T  +V SA   I
Sbjct: 220 IAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGI 279

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE G+W+H+++  S   +++  VG  +++MY+K GS+ DAR VFDRV+ KDVV WNSM
Sbjct: 280 GALEQGKWVHAHMIKSGE-RLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSM 338

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +  +A +G G++A+  F EM +  +  + ITF+ +L+AC+H GLV EG+++F+ MK EY 
Sbjct: 339 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYN 397

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP+++HY  +V+LL RAG + +A   +  M ++P + +WG LLG+CR+H N  +G+  A
Sbjct: 398 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAA 457

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           +++   +  ++G  VLL NIYA+ G WD  ARVR +MK  GV+KEP CS +E+ N VH F
Sbjct: 458 DHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 517

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HP+S+EIY   EEI+  ++  GYVP T  VL  + E+++Q  L+ HSEK+A+AF
Sbjct: 518 VANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAF 577

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
            LI+   G +I+I+KN+R+C DCH+ F+ ISK   R+I++RD NRFHHF +G+CSCGDY
Sbjct: 578 ALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 134/247 (54%), Gaps = 5/247 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G VA AR +FD M  +D+  W  +I GYAQ+ + +EAL L   ML  + +P
Sbjct: 104 SLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKP 163

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T  ++L A G   +   G  IH+ +    +   +V VG+AL++MY++CG +  A  V
Sbjct: 164 NGFTFASLLKAAGASASSGIGEQIHA-LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAV 222

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD++  K+ V WN++I G+A  G G+  L +F EM R   + +  T+  + SA A  G +
Sbjct: 223 FDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGAL 282

Query: 226 NEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G+     M K    +   V +   ++++ +++G + +A K V D   + D V W ++L
Sbjct: 283 EQGKWVHAHMIKSGERLSAFVGN--TILDMYAKSGSMIDARK-VFDRVDKKDVVTWNSML 339

Query: 285 GACRLHG 291
            A   +G
Sbjct: 340 TAFAQYG 346



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 12/231 (5%)

Query: 101 EKVEPNEVTAV-----AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           + V+  E+ A      ++++AC +  +L+  R IH+++  S+    +V +  +LI++Y K
Sbjct: 53  DSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQ-FAGSVFLDNSLIHLYCK 111

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG++ DAR VFD +  +D+  W S+I GYA +    +AL L   M R R KP+  TF  L
Sbjct: 112 CGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASL 171

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L A   +     G +  + +  +Y     V     ++++ +R G+++ A   V D     
Sbjct: 172 LKAAGASASSGIGEQ-IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIA-VFDQLESK 229

Query: 276 DSVLWGTLLGACRLHGNIALGE-KIAEYLISQNLANSGTYVLLSNIYAAIG 325
           + V W  L+      G+   GE  +  +   Q      T+   S++++AI 
Sbjct: 230 NGVSWNALIAGFARKGD---GETTLLMFAEMQRNGFEATHFTYSSVFSAIA 277


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/435 (46%), Positives = 286/435 (65%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L  Y K   +  A  +F+    +D+V +  MI  Y+Q+GL  EAL ++ RM    ++P
Sbjct: 430 SLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKP 489

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +     ++ +AC  + A E G+ IH ++     +  +V  G +L+NMY+KCGS+ DA  +
Sbjct: 490 DAFIFSSLFNACANLSAYEQGKQIHVHVLKC-GLLSDVFAGNSLVNMYAKCGSIDDASCI 548

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ ++ + +V W++MI G A HG G+ ALQLF +M +  + P+ IT + +LSAC HAGLV
Sbjct: 549 FNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLV 608

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            E RRFF  M+  + I P  EHY CMV++L R G+++EA  LV +M  +  + +WG LLG
Sbjct: 609 TEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLG 668

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           A R+H NI LG   AE L++     SGT++LL+NIYA+ G WD VA+VR  MK   V+KE
Sbjct: 669 AARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKE 728

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IEL +KV+ F+ GD  HP+SKEIY+ L+++   L + GYVP  +  LHD+ + +K
Sbjct: 729 PGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEK 788

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSEKLAVAFGLI+T PG  I++ KNLRVC DCH  FK ISK   R+I++RD NR
Sbjct: 789 EQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINR 848

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G+CSCGDYW
Sbjct: 849 FHHFRDGSCSCGDYW 863



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 166/338 (49%), Gaps = 43/338 (12%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S   +L  YAK G   AA  +F ++ + D+V WN +I G   H   + AL L  +M + +
Sbjct: 225 SANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYR 284

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V P+  T  + L AC  IG ++ GR +HS +    +++ +  VG  LI+MYSKCG L+DA
Sbjct: 285 VAPSMFTLSSALKACAAIGLVKLGRQLHSALMK-MDMEPDSFVGVGLIDMYSKCGLLQDA 343

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-- 220
           R+VFD +  KDV+VWNS+I GY+  G+  +A+ LF  M +  L+ +  T   +L + A  
Sbjct: 344 RMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGS 403

Query: 221 ---------HAGLVNEGRRF----FNTMKDEYA-------------IEPKVE--HYGCMV 252
                    H   +  G ++     N++ D Y              + P  +   Y  M+
Sbjct: 404 QANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMI 463

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEY-----LI 304
              S+ G  EEA K+ + M+   I+PD+ ++ +L  AC        G++I  +     L+
Sbjct: 464 TAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLL 523

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           S   A +     L N+YA  G+ D  + +   +  +G+
Sbjct: 524 SDVFAGNS----LVNMYAKCGSIDDASCIFNEISWRGI 557



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 122/273 (44%), Gaps = 41/273 (15%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y+K      AR L  D  E D+V W+ +I GY Q+G   EAL+ +  M     + NE T 
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 111 VAVLSACGQIGALESGRWIH-------------SYIENSRNIKVNVQVG----------- 146
            +VL  C     LE G+ IH             S  E S +  +N   G           
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 147 ---------------TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
                           AL++MY+K G  + A  VF  +   D+V WN++I G  +H    
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            AL+L  +M   R+ PS  T    L ACA  GLV  GR+  + +  +  +EP       +
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALM-KMDMEPDSFVGVGL 330

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +++ S+ G +++A ++V D+    D ++W +++
Sbjct: 331 IDMYSKCGLLQDA-RMVFDLMPXKDVIVWNSII 362



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  D++   SLV++YA+ G +  A  +F  +  R +VS                  
Sbjct: 518 LKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS------------------ 559

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ MI G AQHG   +AL LF +ML   + PN +T V+VLSAC   G
Sbjct: 560 -------------WSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAG 606

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            +   R     +E    I    +    ++++  + G L +A  LV +        VW ++
Sbjct: 607 LVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGAL 666

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 667 LGAARIH 673



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 40/201 (19%)

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +N+YSKC   + AR +    ++ D+V W+++I GY  +G G++AL  + EM  +  K ++
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTM-----------KDEYAIEPKV--------EHYG- 249
            TF  +L  C+    +  G++                 +E+++   +        E+YG 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 250 -------------------CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
                               ++++ +++G  E A  +  ++  +PD V W  ++  C LH
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267

Query: 291 GNIALGEKIAEYLISQNLANS 311
               L  K+   + S  +A S
Sbjct: 268 EKNDLALKLLGKMGSYRVAPS 288


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 309/509 (60%), Gaps = 33/509 (6%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE------- 56
           F L+ D++V T+LVD YA+ G ++ A++LF++M  R +V+   M+   +  G        
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 57  -------------------------VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
                                    +  AR +FD M  ++ V W+ MI GY       EA
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEA 257

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           L +FR M    ++P+  T + VL AC  + AL+ G   H Y+   R    +  +  ALI+
Sbjct: 258 LDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFATDTLICNALID 316

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MYSKCG +  AR VF+R++  D+V WN+MI+GY +HG G +AL LF+++  + LKP DIT
Sbjct: 317 MYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDIT 376

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           FI LLS+C+H+GLV EGR +F+ M  +++I P++EH  CMV++L RAG ++EA+  + +M
Sbjct: 377 FICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNM 436

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
             EPD  +W  LL ACR+H NI LGE++++ + S    ++G +VLLSNIY+A G WD  A
Sbjct: 437 PFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAA 496

Query: 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            +R   K+ G++K PGCS IE++  VH F+ GD  H +  +I   LEE+   +K  GY  
Sbjct: 497 HIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQA 556

Query: 392 QTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLIS 451
           +   V  D+ E++K+  L  HSEKLA+AFG+++ + G  I + KNLRVC DCH   K ++
Sbjct: 557 ECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMT 616

Query: 452 KFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             T R+I +RD NRFHHF NGTC+CGD+W
Sbjct: 617 LITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 134/265 (50%), Gaps = 16/265 (6%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y    +V  AR LFD++    V+ WN +I  YA +G  + A+ L+  ML   V PN+ T 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL AC  + A+E G  IHS+ +    ++ +V V TAL++ Y+KCG L +A+ +F  ++
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +DVV WN+MI G +++G   DA+QL  +M    + P+  T +G+L  C     +   R+
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ---CLLYARK 228

Query: 231 FFNTM--KDEYAIEPKVEHY---GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            F+ M  ++E +    +  Y    CM   L       + ++++    I+PD      +L 
Sbjct: 229 IFDVMGVRNEVSWSAMIGGYVASDCMKEAL-------DIFRMMQLSGIDPDLTTMLGVLP 281

Query: 286 ACRLHGNIALGEKIAEYLISQNLAN 310
           AC     +  G     YLI +  A 
Sbjct: 282 ACSHLAALQHGFCSHGYLIVRGFAT 306



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 5/180 (2%)

Query: 113 VLSACGQIGALESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           +L AC Q  +L   + IH  +++N+ N   +  V   L  +Y  C  +  AR +FD + +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSN--ADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
             V++WN +I  YA +G    A+ L++ M  + ++P+  T+  +L AC+    + +G   
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  K  + +E  V     +V+  ++ G + EA +L   M    D V W  ++  C L+G
Sbjct: 132 HSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 304/480 (63%), Gaps = 33/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK+    D+YV ++L+D+YAR                           C    G +  A
Sbjct: 67  TVKYDWHDDVYVGSALLDMYAR---------------------------C----GRMDMA 95

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             +FD +E K+ V WN +I G+A+ G     L++F  M     E    T  +V SA   I
Sbjct: 96  IAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGI 155

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE G+W+H+++  S   +++  VG  +++MY+K GS+ DAR VFD V+ KD+V WNSM
Sbjct: 156 GALEQGKWVHAHMIKSGE-RLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSM 214

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +  +A +G G++A+  F EM +  +  + ITF+ +L+AC+H GLV EG+++F+ MK E+ 
Sbjct: 215 LTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EHN 273

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP+++HY  +V+LL RAG + +A   +  M ++P + +WG LLG+CR+H N  +G+  A
Sbjct: 274 LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAA 333

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           +++   +  ++G  VLL NIYA+ G WD  ARVR +MK  GV+KEP CS +E+ N VH F
Sbjct: 334 DHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMF 393

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HP+S+EIY   EEI+  ++  GYVP T  VL  + E+++Q  L+ HSEK+A+AF
Sbjct: 394 VANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAF 453

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI+   G +I+I+KN+R+C DCH+ F+ ISK   R+I++RD NRFHHF +G+CSCGDYW
Sbjct: 454 ALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  +D+  W  +I GYAQ+ + +EAL L   ML  + +PN  T  ++L A G   +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             IH+ +    +   +V VG+AL++MY++CG +  A  VFD++  K+ V WN++I G+A 
Sbjct: 61  EQIHA-LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKV 245
            G G+  L +F EM R   + +  T+  + SA A  G + +G+     M K    +   V
Sbjct: 120 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 179

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +   ++++ +++G + +A K V D   + D V W ++L A   +G
Sbjct: 180 GN--TILDMYAKSGSMIDARK-VFDHVDKKDLVTWNSMLTAFAQYG 222


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/508 (40%), Positives = 304/508 (59%), Gaps = 31/508 (6%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L++D+++   LVD+Y++ GD+  A ++F  MP+R +V+   M+   ++  +   AR 
Sbjct: 143 KGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARR 202

Query: 63  LFDDMEEKDVVCWNVMIDGYA------------------------------QHGLANEAL 92
           +FD M ++D V W  M+ GYA                              Q+G A EA+
Sbjct: 203 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAI 262

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
             F +M  E   PN VT V+VL A   + A   G   H+ I     +  N  VG +LI+M
Sbjct: 263 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLS-NTLVGNSLIDM 321

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+KCG L  +  +F+ ++ KD V WN+M+ GYA+HG G  A+ LF+ M   +++   ++F
Sbjct: 322 YAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSF 381

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +LSAC HAGLV EGR+ F++M D+Y I+P +EHY CMV+LL RAG  +E    +  M 
Sbjct: 382 VSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 441

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
           +EPD+ +WG LLG+CR+H N+ LGE   ++L+     N   +V+LS+IYA  G W    +
Sbjct: 442 VEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGK 501

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
            R+ M + G++K PGCS +EL NKVH F  GD  HP+ + ++++   +   ++  GYVP 
Sbjct: 502 ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPD 561

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
              VL ++ E+ K+  L  HSE+LA+ F L++T PG++I+IVKNLRVC DCH   K ISK
Sbjct: 562 RSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISK 621

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            T R+I++RD  RFHHF +G CSC DYW
Sbjct: 622 ITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 38/281 (13%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S+T ++  Y+   +   AR +FD       + WN MI  Y +    NEAL ++  M+ + 
Sbjct: 85  SITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 144

Query: 103 -VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            +E +      ++    ++G L+  R +   +      K +V    A+I   S+      
Sbjct: 145 GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-----KRDVVAWNAMIAGLSQSEDPYV 199

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--------------------- 200
           AR VFD++ D+D V W +M+ GYA +G   + L+LF++M                     
Sbjct: 200 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAK 259

Query: 201 ------CRIRLK---PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
                  ++RL+   P+ +TF+ +L A A+     EG  F   +  +            +
Sbjct: 260 EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII-QMGFLSNTLVGNSL 318

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +++ ++ GQ++ + KL  +M    D+V W  +L    +HG+
Sbjct: 319 IDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSGYAVHGH 358


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 307/480 (63%), Gaps = 6/480 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
           +  D+Y  T++++  AR   +   +++   + +  +         ++  YAK G +  A 
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQI 120
           ++F +M  KD++ WN +I GY+++  ANEAL LF  +L EK   P+E T   VL AC  +
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASL 512

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A + GR IH YI  +     +  V  +L++MY+KCG+L  ARL+FD +  KD+V W  M
Sbjct: 513 SAFDKGREIHGYIMRNGYFS-DRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GY MHGFGK+A+ LFN+M +  ++P +I+F+ LL AC+H+GLV+EG RFFN M+ E  
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP VEHY C+V++L+R G + +AY+ + +M I PD+ +WG LL  CR+H ++ L E++A
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVA 691

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E +      N+G YVL++NIYA    W+ V R+R  + ++G++K PGCS IE+  +V+ F
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AGD  +P++++I   L  +   +  EGY P T+  L D  E +K+ +L  HSEKLA+A 
Sbjct: 752 VAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMAL 811

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G+IS+  G  I++ KNLRVC DCH + K +SK T R+I++RD NRFH F +G CSC  +W
Sbjct: 812 GIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 143/249 (57%), Gaps = 6/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T+L  Y+K G++ +A+V+F +M  + VV +  MI GYA+ GLA EA+ LF  M  E + 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T  AVL+ C +   L+ G+ +H +I+ + ++  ++ V  AL++MY+KCGS+++A L
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN-DMGFDIFVSNALMDMYAKCGSMREAEL 453

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN-EMCRIRLKPSDITFIGLLSACAHAG 223
           VF  +  KD++ WN++I GY+ + +  +AL LFN  +   R  P + T   +L ACA   
Sbjct: 454 VFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLS 513

Query: 224 LVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
             ++GR      M++ Y  +  V +   +V++ ++ G +  A +L+ D     D V W  
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLA-RLLFDDITSKDLVSWTV 570

Query: 283 LLGACRLHG 291
           ++    +HG
Sbjct: 571 MIAGYGMHG 579



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 150/276 (54%), Gaps = 5/276 (1%)

Query: 12  VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           VS S   L +  GG+ L    L +   +R+ V   +++  Y K   V +AR +FD+M E+
Sbjct: 201 VSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTER 259

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           DV+ WN +I+GY  +GLA + L +F +ML   +E +  T V+V + C     +  GR +H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            +   +   + +    T L++MYSKCG L  A++VF  ++ + VV + SMI GYA  G  
Sbjct: 320 CFGVKACFSREDRFCNT-LLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLA 378

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A++LF EM    + P   T   +L+ CA   L++EG+R    +K E  +   +     
Sbjct: 379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK-ENDMGFDIFVSNA 437

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           ++++ ++ G + EA  +  +M+++ D + W T++G 
Sbjct: 438 LMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGG 472



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 151/329 (45%), Gaps = 41/329 (12%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y   G++  A  +FD ++ +  + WN++++  A+ G  + ++ LF++M++  VE +  T 
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             V  +   + ++  G  +H YI  S   + N  VG +L+  Y K   +  AR VFD + 
Sbjct: 199 SCVSKSFSSLRSVNGGEQLHGYILKSGFGERN-SVGNSLVAFYLKNHRVDSARKVFDEMT 257

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR- 229
           ++DV+ WNS+I GY  +G  +  L +F +M    ++    T + + + CA + L++ GR 
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 230 --------------RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQ 260
                         RF NT+ D Y+                   V  Y  M+   +R G 
Sbjct: 318 VHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGL 377

Query: 261 VEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317
             EA KL  +M+   I PD      +L  C  +  +  G+++ E++   ++   G  + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDM---GFDIFV 434

Query: 318 SN----IYAAIGNWDGVARVRTLMKEKGV 342
           SN    +YA  G+      V + M+ K +
Sbjct: 435 SNALMDMYAKCGSMREAELVFSEMRVKDI 463



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 23/257 (8%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++ V   N  +  + + G    A+ L        ++P   T  +VL  C    +L+ G+ 
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           + ++I  +    ++  +G+ L  MY+ CG LK+A  VFD+V  +  + WN ++   A  G
Sbjct: 116 VDNFIRGN-GFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSG 174

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEH 247
               ++ LF +M    ++    TF  +  + +    VN G +     +K  +     V +
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN 234

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
              +V    +  +V+ A K V D   E D + W +++                   +S  
Sbjct: 235 --SLVAFYLKNHRVDSARK-VFDEMTERDVISWNSIING----------------YVSNG 275

Query: 308 LANSGTYVLLSNIYAAI 324
           LA  G  V +  +++ I
Sbjct: 276 LAEKGLSVFVQMLFSGI 292


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/437 (47%), Positives = 294/437 (67%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT++  YAK G++ +A+ +FD++  +DV  WN +I G AQ   ++EAL LF RM AE  +
Sbjct: 139 TTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEK 198

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NE++ +  L+AC Q+GAL +G  +H+ +    ++ +NVQV  A+I+MY+KCG       
Sbjct: 199 INEISVLGALAACSQLGALRAGEGVHACVRKM-DLDINVQVCNAVIDMYAKCGFADKGFR 257

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           VF  +   K VV WN+MI+ +AMHG G  AL+LF EM + +++   +T++ +L AC HAG
Sbjct: 258 VFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAG 317

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG R F+ M     +   V+HYG +V+LL RAG++ EAY+++  M I PD VLW +L
Sbjct: 318 LVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSL 376

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC+ +GN+ + E  +  L+     + G +VLLSN+YAA   W+ V RVR  MK + V+
Sbjct: 377 LGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVR 436

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S IE+   +H+F+ GD  HP  +EIY  L+EI   +KA GYV +T +VLHDIGE+
Sbjct: 437 KVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEE 496

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+N+L  HSEKLAVAFGLIST  GT I++ KNLR+C DCH V KLISK   ++I++RDR
Sbjct: 497 DKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDR 556

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFH F +G+CSC DYW
Sbjct: 557 ARFHRFKDGSCSCRDYW 573



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 6/218 (2%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N ++ G A+      AL     +L     P+ +T    L A  +  AL     IHS++ 
Sbjct: 72  FNALLRGLARGPHPTHALTFLSTIL----HPDALTFSFSLIASARALALSETSQIHSHLL 127

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
             R    ++ +GT LI+ Y+KCG L  A+ VFD +  +DV  WN++I G A      +AL
Sbjct: 128 R-RGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEAL 186

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LFN M     K ++I+ +G L+AC+  G +  G      ++ +  ++  V+    ++++
Sbjct: 187 ALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVR-KMDLDINVQVCNAVIDM 245

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
            ++ G  ++ +++   M      V W T++ A  +HG+
Sbjct: 246 YAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGD 283



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 36/189 (19%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAAAR 61
           K  LD ++ V  +++D+YA+ G      ++F+TM   +S+V+  TM+  +A         
Sbjct: 229 KMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFA--------- 279

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG    AL LF  M   +VE + VT +AVL AC   G
Sbjct: 280 ----------------------MHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAG 317

Query: 122 ALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
            +E G R     +   R +  NV+   +++++  + G L +A R++       DVV+W S
Sbjct: 318 LVEEGVRLFDEMV--GRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQS 375

Query: 180 MIVGYAMHG 188
           ++     +G
Sbjct: 376 LLGACKTYG 384


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 316/479 (65%), Gaps = 13/479 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           ++ D +    L+   ++  +V   E + +   +    SL     ++L  YA  G+  +A 
Sbjct: 126 IEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAH 185

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+ M ++D+V    +I+G+A +G  +EAL LFR M AE VEP+  T V++LSA  ++G
Sbjct: 186 NVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELG 245

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE GR +H Y+     ++ N  V  +L+++Y+KC ++ +         +++ V W S+I
Sbjct: 246 ALELGRRVHVYLLKV-GLRENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLI 296

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VG A++GFG++AL+LF EM    L PS+ITF+G+L AC+H G+++EG  +F  MK+E+ I
Sbjct: 297 VGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGI 356

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYGCMV+LLSRAG V++AY+ + +M ++P++V W TLLGAC +HG++ LGE    
Sbjct: 357 MPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARS 416

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L+     +SG YVLLSN+Y +   W  V  +R  M + GV+K  G S +EL N+V+EF 
Sbjct: 417 HLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFT 476

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            G+  HP+S+++Y +LE+I   LK EGYVP T  VL DI E++K+ +L  HSEK A+AF 
Sbjct: 477 MGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFM 536

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ++T PGT+I+++KNLRVC DCH   KL++K   R+I++RDR RFHHF  G+CSC DYW
Sbjct: 537 RLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 28/257 (10%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           ++ A  +F  +   +V  WN M  GYA+    + AL  +R+M+  ++EP+  T   +L A
Sbjct: 80  LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKA 139

Query: 117 CGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
             +   +  G  IHS  I N     V VQ   +L+++Y+ CG  + A  VF+ + D+D+V
Sbjct: 140 ISKSLNVREGEAIHSVTIRNGFESLVFVQ--NSLLHIYAACGDTESAHNVFELMRDRDLV 197

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF--- 232
              S+I G+A++G   +AL LF EM    ++P   T + LLSA A  G +  GRR     
Sbjct: 198 AXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYL 257

Query: 233 ------------NTMKDEYA-------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK- 272
                       N++ D YA        E     +  ++  L+  G  EEA +L  +M+ 
Sbjct: 258 LKVGLRENSHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGLAVNGFGEEALELFREMEG 317

Query: 273 --IEPDSVLWGTLLGAC 287
             + P  + +  +L AC
Sbjct: 318 QGLVPSEITFVGVLYAC 334


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 303/469 (64%), Gaps = 3/469 (0%)

Query: 14  TSLVDLYARGGDV-LSAEKLFATMPQRSLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKD 71
           T+++  Y + G+    A +LF  M   S+  +  ++++ YA+ G +  AR  FD + EK+
Sbjct: 30  TAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 89

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           +V +N ++DGYA++  + EA +LF  +    +  +  T  ++LS    IGA+  G  IH 
Sbjct: 90  LVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHG 149

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
            +      K N  +  ALI+MYS+CG+++ A  VF+ + D++V+ W SMI G+A HGF  
Sbjct: 150 RLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 208

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            AL++F++M     KP++IT++ +LSAC+H G+++EG++ FN+M  E+ I P++EHY CM
Sbjct: 209 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 268

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL R+G + EA + +  M +  D+++W TLLGACR+HGN  LG   AE ++ Q   + 
Sbjct: 269 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP 328

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
             Y+LLSN++A+ G W  V ++R  MKE+ + KE GCS IE+ N+VH F  G+  HP++ 
Sbjct: 329 AAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAW 388

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
           +IY  L+++   +K  GY+P T  VLHDI E+QK+  L  HSEK+AVAFGLIST     I
Sbjct: 389 QIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPI 448

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I KNLRVC DCH   K IS  TGR+I++RD NRFHH  NG CSC DYW
Sbjct: 449 RIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 41/236 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+ +Y+R G++ +A ++F  M  R+++S T+M+T +AK                  
Sbjct: 162 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK------------------ 203

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG A  AL +F +ML    +PNE+T VAVLSAC  +G +  G+   +
Sbjct: 204 -------------HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 250

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG-- 188
            +     I   ++    ++++  + G L +A    + +    D +VW +++    +HG  
Sbjct: 251 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 310

Query: 189 -FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
             G+ A ++  E      +P D   +I L +  A AG   +  +   +MK+   I+
Sbjct: 311 ELGRHAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 361


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/439 (46%), Positives = 287/439 (65%), Gaps = 4/439 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-- 102
           T++++ YA  G+  +AR +FD+M  +D + WNV+I  Y ++    +AL LF  M   +  
Sbjct: 164 TSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENG 223

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            EP++VT + +L AC  +GAL+ G  +  Y  +       ++V  +LI MY+KCG +  A
Sbjct: 224 AEPDDVTCILLLQACTSLGALDFGEKVWEYAVD-HGYGGELKVRNSLITMYTKCGCVDKA 282

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF     K VV W++MI G A +GFGKDA+  F EM R  + P + TF G+LSAC+H+
Sbjct: 283 YQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHS 342

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM-DMKIEPDSVLWG 281
           GLV+EG +FF+ M  EY ++P V HYGCMV+L+ RAG +++AY+LV+ DM++ PD+ +W 
Sbjct: 343 GLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWR 402

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           TLLGACR+HG+I LGE++  +LI      +G YVLL N YAA+ +W  VA VR LMKEKG
Sbjct: 403 TLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKG 462

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +Q  PGC+++EL+ ++HEF+A D  HP+  EIY  L+EIN  L+  GYVP     LHD+ 
Sbjct: 463 IQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLD 522

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            + K+ +L  HSEKLA+AF L+ T     I++ KNLRVC DCH   K+ S    R +++R
Sbjct: 523 SEGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVR 582

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           DR RFHHF    CSC DYW
Sbjct: 583 DRTRFHHFKEFQCSCNDYW 601



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G   AL   R +H+ +  +     +  + T+L++ Y+ CG    AR VFD +  +D + W
Sbjct: 136 GHCRALAHARQLHANVV-AEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAW 194

Query: 178 NSMIVGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
           N +I  Y  +   KDAL+LF+ M       +P D+T I LL AC   G ++ G + +   
Sbjct: 195 NVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYA 254

Query: 236 KDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            D  Y  E KV +   ++ + ++ G V++AY++  +   +   V W  ++
Sbjct: 255 VDHGYGGELKVRN--SLITMYTKCGCVDKAYQVFCETP-KKSVVTWSAMI 301


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/436 (46%), Positives = 287/436 (65%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T++  YA+   V  A  +F  M ++D+  W VMI   A+ G+  E+LV F RM  + + 
Sbjct: 190 ATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIV 249

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++V  V V+ AC ++GA+   + IH+YI N     ++V +GTA+I+MY+KCGS++ AR 
Sbjct: 250 PDKVALVTVVYACAKLGAMNKAKAIHAYI-NGTGYSLDVILGTAMIDMYAKCGSVESARW 308

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FDR+  ++V+ W++MI  Y  HG G+ AL+LF  M R  + P+ ITF+ LL AC+HAGL
Sbjct: 309 IFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGL 368

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG+RFF++M DEY + P V+HY CMV+LL RAG+++EA +++  M +E D VLWG LL
Sbjct: 369 IEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALL 428

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H ++ L E++A  L+       G YVLLSNIYA  G W+ +A+ R LM + G++K
Sbjct: 429 GACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRK 488

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG + IE+  K+++F  GD  HP+S EIY ML+ +   L+  GY P T  VL+D+ E+ 
Sbjct: 489 IPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEV 548

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           KQ  L  HSEKLA+AFGL+    G  I+I KNLRVC DCH   K +S    + I++RD  
Sbjct: 549 KQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAK 608

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSC DYW
Sbjct: 609 RFHHFKEGVCSCRDYW 624



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 135/284 (47%), Gaps = 12/284 (4%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R+L     +L  Y ++G +  A+ LFD M ++    W+V++ GYA+ G       +FR +
Sbjct: 83  RNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFREL 142

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L      ++ +A  V+ AC  +  L+ GR IH  I     +     V   L++MY++C  
Sbjct: 143 LRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHC-ITLKCGLDYGHFVCATLVDMYARCKV 201

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++DA  +F ++  +D+  W  MI   A  G   ++L  F+ M    + P  +  + ++ A
Sbjct: 202 VEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYA 261

Query: 219 CAHAGLVNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           CA  G +N+ +     +    Y+++  V     M+++ ++ G VE A  +   M++  + 
Sbjct: 262 CAKLGAMNKAKAIHAYINGTGYSLD--VILGTAMIDMYAKCGSVESARWIFDRMQVR-NV 318

Query: 278 VLWGTLLGACRLHGNIALGEKIAEY----LISQNLANSGTYVLL 317
           + W  ++ A   HG    GEK  E     L S  L N  T+V L
Sbjct: 319 ITWSAMIAAYGYHGQ---GEKALELFPMMLRSGILPNRITFVSL 359



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ + T+++D+YA+ G V SA  +F  M  R++++ + M+  Y                 
Sbjct: 286 DVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAY----------------- 328

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                       GY  HG   +AL LF  ML   + PN +T V++L AC   G +E G+ 
Sbjct: 329 ------------GY--HGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQR 374

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
             S + +   +  +V+  T ++++  + G L +A  + + +  +KD V+W +++    +H
Sbjct: 375 FFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIH 434


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/476 (45%), Positives = 294/476 (61%), Gaps = 2/476 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++K+     +++  Y   GD+  A   F   P R +V+ T M+T Y K  +V  A  +F 
Sbjct: 182 MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFK 241

Query: 66  DME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           DM   K++V WN MI GY ++    + L LFR ML E + PN     + L  C ++ AL+
Sbjct: 242 DMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQ 301

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR IH  +  S  +  +V   T+LI+MY KCG L DA  +F+ +  KDVV WN+MI GY
Sbjct: 302 LGRQIHQIVSKS-TLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGY 360

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A HG    AL LF EM   +++P  ITF+ +L AC HAGLVN G  +F +M  +Y +EP+
Sbjct: 361 AQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQ 420

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV+LL RAG++EEA KL+  M   P + ++GTLLGACR+H N+ L E  AE L+
Sbjct: 421 PDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLL 480

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
             N  N+  YV L+NIYA+   W+ VARVR  MKE  V K PG S IE+ NKVH F + D
Sbjct: 481 QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSD 540

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP+   I+  L+E+   +K  GY P+ +  LH++ E+QK+  L  HSEKLAVAFG I 
Sbjct: 541 RIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIK 600

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              G+ I++ KNLR+C DCH   K IS+   R+I++RD  RFHHF +G+CSCGDYW
Sbjct: 601 LPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 16/335 (4%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           L+ +      ++ A +LF  +P+    S   ML+CY +      A+  FD M  KD   W
Sbjct: 99  LIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASW 158

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N MI GYA+ G   +A  LF  M+    E NEV+  A++S   + G LE      S+   
Sbjct: 159 NTMITGYARRGEMEKARELFYSMM----EKNEVSWNAMISGYIECGDLEKA----SHFFK 210

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
              ++  V   TA+I  Y K   ++ A  +F D   +K++V WN+MI GY  +   +D L
Sbjct: 211 VAPVR-GVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGL 269

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
           +LF  M    ++P+       L  C+    +  GR+    +  +  +   V     ++++
Sbjct: 270 KLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIV-SKSTLCNDVTALTSLISM 328

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---S 311
             + G++ +A+KL   MK + D V W  ++     HGN      +   +I   +     +
Sbjct: 329 YCKCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWIT 387

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
              VLL+  +A + N  G+A   +++++  V+ +P
Sbjct: 388 FVAVLLACNHAGLVN-IGMAYFESMVRDYKVEPQP 421



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 37/163 (22%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +L  D+   TSL+ +Y + G++  A KLF  M ++ +V+   M++ YA          
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYA---------- 361

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                QHG A++AL LFR M+  K+ P+ +T VAVL AC   G 
Sbjct: 362 ---------------------QHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400

Query: 123 LESGRWIHSYIENS-RNIKVNVQVG--TALINMYSKCGSLKDA 162
           +  G    +Y E+  R+ KV  Q    T ++++  + G L++A
Sbjct: 401 VNIGM---AYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFI 213
           + G +  A  VF  +  K+ + WNS+++G +       +A QLF+E+     +P   ++ 
Sbjct: 73  RSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI----PEPDTFSYN 128

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +LS         + + FF+ M  + A       +  M+   +R G++E+A +L   M +
Sbjct: 129 IMLSCYVRNVNFEKAQSFFDRMPFKDAAS-----WNTMITGYARRGEMEKARELFYSM-M 182

Query: 274 EPDSVLWGTLLG 285
           E + V W  ++ 
Sbjct: 183 EKNEVSWNAMIS 194


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 304/468 (64%), Gaps = 10/468 (2%)

Query: 22  RGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
           + GD+L   ++   +     +S    +TT++  Y+       A  +FD++ ++D V WNV
Sbjct: 125 KSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNV 184

Query: 78  MIDGYAQHGLANEALVLFRRMLAEK---VEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +   Y ++    + LVLF +M  +    V+P+ VT +  L AC  +GAL+ G+ +H +I+
Sbjct: 185 LFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFID 244

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            +  +   + +   L++MYS+CGS+  A  VF  + +++VV W ++I G AM+GFGK+A+
Sbjct: 245 EN-GLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAI 303

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD-EYAIEPKVEHYGCMVN 253
           + FNEM +  + P + T  GLLSAC+H+GLV EG  FF+ M+  E+ I+P + HYGC+V+
Sbjct: 304 EAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVD 363

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL RA  +++AY L+  M+++PDS +W TLLGACR+HG++ LGE++  +LI      +G 
Sbjct: 364 LLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGD 423

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YVLL N Y+ +G W+ V  +R+LMKEK +  +PGCS+IEL   VHEF+  D+ HP+ +EI
Sbjct: 424 YVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEI 483

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           Y ML EIN  LK  GYV +    LH++  E++K  +L  HSEKLA+AFG++ T PGT+I+
Sbjct: 484 YKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIR 543

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + KNLR C DCH   K +S    R +++RDR+RFHHF  G+CSC D+W
Sbjct: 544 VTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/472 (44%), Positives = 297/472 (62%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +  +L+  YA+ G V +A ++   A +   +++S T +L  Y K G+   AR +FD M  
Sbjct: 333 IMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNN 392

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DV+ W  MI GY Q+G  +EA+ LFR M+    EPN  T  AVLSAC  +  L  G+ I
Sbjct: 393 RDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQI 452

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S   + +V V  A+I +Y++ GS+  AR VFD++   K+ V W SMIV  A HG
Sbjct: 453 HCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G+ A+ LF EM R+ +KP  +T+IG+ SAC HAG +++G+R++  M +E+ I P++ HY
Sbjct: 512 LGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHY 571

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+RAG + EA++ +  M + PD+V+WG+LL ACR+  N  L E  AE L+S + 
Sbjct: 572 ACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDP 631

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  L+N+Y+A G W+  AR+  L K+K V+KE G S   + +KVH F A D+ HP
Sbjct: 632 DNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHP 691

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +   I     E+   +K  G+VP    VLHD+ ++ K+  L  HSEKLA+AFGLIST   
Sbjct: 692 QRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 751

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH   K ISK   R+I++RD  RFHHF +G CSC DYW
Sbjct: 752 TTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 169/334 (50%), Gaps = 45/334 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L   + V+ S++ +Y + GD  +A  +F  M  RS  S   M++ Y  QG +  A 
Sbjct: 190 IKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLAL 249

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQI 120
            +F++MEE+ +V WN +I GY Q+GL + AL  F RML A  +EP+E T  +VLSAC  +
Sbjct: 250 SMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANL 309

Query: 121 GALESGRWIHSYI-------------------------ENSRNI-------KVNVQVGTA 148
             L+ G+ +HSYI                         E +R I        +NV   TA
Sbjct: 310 RMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTA 369

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+  Y K G  K AR VFD +N++DV+ W +MIVGY  +G   +A++LF  M R   +P+
Sbjct: 370 LLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPN 429

Query: 209 DITFIGLLSACAHAGLVNEGR----RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             T   +LSACA    +  G+    R   +++     E  V     ++ + +R+G V  A
Sbjct: 430 SHTLAAVLSACASLAYLGYGKQIHCRAIRSLQ-----EQSVSVSNAIITVYARSGSVPLA 484

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
            ++   +    ++V W +++ A   HG   LGE+
Sbjct: 485 RRVFDQICWRKETVTWTSMIVALAQHG---LGEQ 515



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 163/343 (47%), Gaps = 62/343 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGD----VLSAEKLFATMP--QRSLVSLTTMLTCYAKQG 55
           VK  L    Y+  +L+  YAR G        A +LF  +P  +R+  +  ++L+ YAK G
Sbjct: 52  VKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSG 111

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
            +A ARV+F  M E+D V W VM+ G  + G   +A+  F  M+ E + P++     VLS
Sbjct: 112 RLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLS 171

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRVN- 170
           +C    A   GR +HS++     IK+     V V  +++ MY KCG  + AR VF+R+  
Sbjct: 172 SCAATEARGIGRKVHSFV-----IKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKV 226

Query: 171 ------------------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
                                         ++ +V WN++I GY  +G    AL+ F+ M
Sbjct: 227 RSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRM 286

Query: 201 CRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL---- 255
                ++P + T   +LSACA+  ++  G++  +     Y +   + +   ++N L    
Sbjct: 287 LTASSMEPDEFTVTSVLSACANLRMLKMGKQMHS-----YILRTGMPYSSQIMNALISTY 341

Query: 256 SRAGQVEEAYKLVMDMKIEPD-SVLWGTLLGACRLHGNIALGE 297
           +++G VE A + +MD  +  D +V+  T L    L G + LG+
Sbjct: 342 AKSGSVETARR-IMDKAVVADLNVISFTAL----LEGYVKLGD 379


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/439 (46%), Positives = 298/439 (67%), Gaps = 5/439 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K GE+++A  LF+ M+ KD+V WN  +    Q G +  AL  F +M A+ V+
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T V++LSACGQ+G+LE G  I+        I  N+ V  A ++M+ KCG+ + AR+
Sbjct: 208 FDSFTVVSMLSACGQLGSLEIGEEIYDRARK-EEIDCNIIVENARLDMHLKCGNTEAARV 266

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  ++VV W++MIVGYAM+G  ++AL LF  M    L+P+ +TF+G+LSAC+HAGL
Sbjct: 267 LFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGL 326

Query: 225 VNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           VNEG+R+F+ M   ++  +EP+ EHY CMV+LL R+G +EEAY+ +  M +EPD+ +WG 
Sbjct: 327 VNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGA 386

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARVRTLMKEKG 341
           LLGAC +H ++ LG+K+A+ L+ +   + G+Y VLLSNIYAA G WD V +VR+ M++ G
Sbjct: 387 LLGACAVHRDMILGQKVADVLV-ETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
            +K    SS+E   K+H F  GD  HP+SK IY  L+EI   ++  GYVP T  V HD+ 
Sbjct: 446 TKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVE 505

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            ++K+ SL  HSEKLA+AFGLI  +PG  I+++KNLR C DCHA  K +S  T  +I+MR
Sbjct: 506 MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMR 565

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D+NRFHHF NG CSC ++W
Sbjct: 566 DKNRFHHFRNGVCSCKEFW 584



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 134/280 (47%), Gaps = 5/280 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT +L      G++  AR +FD+M +  +  WN +  GY ++ L  E+L+L+++M    V
Sbjct: 46  LTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGV 105

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+E T   V+ A  Q+G    G  +H+++       + + V T L+ MY K G L  A 
Sbjct: 106 RPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI-VATELVMMYMKFGELSSAE 164

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+ +  KD+V WN+ +      G    AL+ FN+MC   ++    T + +LSAC   G
Sbjct: 165 FLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLG 224

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G   ++  + E  I+  +      +++  + G  E A  L  +MK + + V W T+
Sbjct: 225 SLEIGEEIYDRARKE-EIDCNIIVENARLDMHLKCGNTEAARVLFEEMK-QRNVVSWSTM 282

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
           +    ++G+    E +  +   QN      YV    + +A
Sbjct: 283 IVGYAMNGDSR--EALTLFTTMQNEGLRPNYVTFLGVLSA 320



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 34/188 (18%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  +D ++ V  + +D++ + G+  +A  LF  M QR++VS +TM+  YA  G+      
Sbjct: 238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGD------ 291

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                    + EAL LF  M  E + PN VT + VLSAC   G 
Sbjct: 292 -------------------------SREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGL 326

Query: 123 LESGRWIHSYI--ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           +  G+   S +   N +N++   +    ++++  + G L++A     ++  + D  +W +
Sbjct: 327 VNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGA 386

Query: 180 MIVGYAMH 187
           ++   A+H
Sbjct: 387 LLGACAVH 394


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 303/466 (65%), Gaps = 6/466 (1%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           SL+  YA+      A  +F+ +    L S+  ++    K G+   A+ +F  M  +DVV 
Sbjct: 110 SLISTYAQCHRPHIALHVFSRI--LDLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVT 167

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN MI GY ++    +AL +FRRML+ KVEP+  T  +V++AC ++GAL + +W+H  + 
Sbjct: 168 WNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMV 227

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
             R +++N  +  ALI+MY+KCG +  +R VF+ V    V VWN+MI G A+HG   DA 
Sbjct: 228 EKR-VELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDAT 286

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            +F+ M    + P  ITFIG+L+AC+H GLV EGR++F  M++ + I+P++EHYG MV+L
Sbjct: 287 LVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDL 346

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
           L RAG +EEAY ++ +M++EPD V+W  LL ACR+H    LGE +A   IS+    SG +
Sbjct: 347 LGRAGLMEEAYAVIKEMRMEPDIVIWRALLSACRIHRKKELGE-VAIANISR--LESGDF 403

Query: 315 VLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIY 374
           VLLSN+Y ++ NWDG  RVR +MK +GV+K  G S +EL + +H+F A    HP+ K IY
Sbjct: 404 VLLSNMYCSLNNWDGAERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIY 463

Query: 375 MMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIV 434
            +LE +    K EG+ P T +VL D+ E++K+ +L  HSEKLA+A+ ++ T PGT I+I 
Sbjct: 464 RVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRIS 523

Query: 435 KNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           KNLR+C DCH   K++SK   RKI++RDR RFH F  G CSC DYW
Sbjct: 524 KNLRICLDCHNWIKIVSKILNRKIIVRDRIRFHQFEGGVCSCKDYW 569


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 296/475 (62%), Gaps = 2/475 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D   +   SLV LY + G    A  +F  MP + LVS   +L+ Y   G +  A+++F +
Sbjct: 317 DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M+EK+++ W +MI G A++G   E L LF  M  E  EP +      + +C  +GA  +G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           +  H+ +        ++  G ALI MY+KCG +++A+ VF  +   D V WN++I     
Sbjct: 437 QQFHAQLVKI-GFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQ 495

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G +A+ ++ EM +  ++P  ITF+ +L+AC+HAGLV++GR++FN+M+  Y I P  +
Sbjct: 496 HGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGAD 555

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY  +++LL R+G+  EA  ++  +  +P + +W  LL  CR+HGN+ LG   A+ L   
Sbjct: 556 HYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              + GTY+LLSN+YAA G W+ VARVR LM+++GV+KE  CS IE+  +VH FL  D  
Sbjct: 616 IPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTS 675

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLIST 425
           HP+++ +Y  L+++   ++  GYVP T  VLHD+  +  K++ L  HSEK+AVAFGL+  
Sbjct: 676 HPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKL 735

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            PGT+I+I KNLR C DCH  F+ +SK   R I++RDR RFHHF NG CSCG++W
Sbjct: 736 PPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 40/317 (12%)

Query: 12  VSTSLVDLYARGGD----VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           VS +LV +Y+R       + SA K+F  +P++   S TTM+T Y K G     + L   M
Sbjct: 186 VSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM 245

Query: 68  EEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +E   +V +N MI GY   GL  EAL + RRM++  +E +E T  +V+ AC     L+ G
Sbjct: 246 DENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG 305

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY-- 184
           + +H+Y+   R    +     +L+ +Y KCG   +AR +F+++  KD+V WN+++ GY  
Sbjct: 306 KQVHAYV--LRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVS 363

Query: 185 -----------------------------AMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
                                        A +GFG++ L+LF+ M R   +P D  F G 
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + +CA  G    G++F   +  +   +  +     ++ + ++ G VEEA ++   M    
Sbjct: 424 IKSCAVLGAYCNGQQFHAQLV-KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-L 481

Query: 276 DSVLWGTLLGACRLHGN 292
           DSV W  L+ A   HG+
Sbjct: 482 DSVSWNALIAALGQHGH 498



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 162/360 (45%), Gaps = 71/360 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           + F      ++   L+D+Y +  ++  A +LF  + +   ++ TTM++ Y   G++A AR
Sbjct: 41  ITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALAR 100

Query: 62  VLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA--- 116
            +F++  +  +D V +N MI G++ +     A+ LF +M  E  +P++ T  +VL+    
Sbjct: 101 SVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLAL 160

Query: 117 -------CGQI--GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS----LKDAR 163
                  C Q    AL+SG     Y+           V  AL+++YS+C S    L  AR
Sbjct: 161 VVDDEKQCVQFHAAALKSGA---GYV---------TSVSNALVSVYSRCASSPSLLHSAR 208

Query: 164 LVFDRVNDKD--------------------------------VVVWNSMIVGYAMHGFGK 191
            VFD + +KD                                +V +N+MI GY   G  +
Sbjct: 209 KVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQ 268

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF--FNTMKDEYAIEPKVEHY- 248
           +AL++   M    ++  + T+  ++ ACA+A L+  G++   +   +++++      H+ 
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSF-----HFD 323

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             +V L  + G+  EA  +   M  + D V W  LL      G+I   + I + +  +N+
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D  L    +L+ +YA+ G V  A+++F TMP            C           
Sbjct: 444 VKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMP------------CL---------- 481

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                    D V WN +I    QHG   EA+ ++  ML + + P+ +T + VL+AC   G
Sbjct: 482 ---------DSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAG 532

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNSM 180
            ++ GR   + +E    I         LI++  + G   +A  + + +  K    +W ++
Sbjct: 533 LVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEAL 592

Query: 181 IVGYAMHG 188
           + G  +HG
Sbjct: 593 LSGCRVHG 600


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/442 (44%), Positives = 292/442 (66%), Gaps = 2/442 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R++  + ++++ Y K  EV  A  +F  ++ + +V WN MI G+AQ+G   +AL  F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            +  V+P+  T V+V++A  ++      +WIH  +  S  +  NV V TAL++MY+KCG+
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGA 488

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  ARL+FD ++++ V  WN+MI GY  HGFGK AL+LF EM +  +KP+ +TF+ ++SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H+GLV  G + F  MK+ Y+IE  ++HYG MV+LL RAG++ EA+  +M M ++P   
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           ++G +LGAC++H N+   EK AE L   N  + G +VLL+NIY A   W+ V +VR  M 
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
            +G++K PGCS +E+ N+VH F +G   HP SK+IY  LE++   +K  GYVP T +VL 
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL- 727

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
            +    K+  L  HSEKLA++FGL++T  GT+I + KNLRVC DCH   K IS  TGR+I
Sbjct: 728 GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREI 787

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RD  RFHHF NG CSCGDYW
Sbjct: 788 VVRDMQRFHHFKNGACSCGDYW 809



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 142/253 (56%), Gaps = 4/253 (1%)

Query: 40  SLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           SLV+++T L   YAK G +  AR LFD M E++VV WN MID Y Q+    EA+++F++M
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM 328

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L E V+P +V+ +  L AC  +G LE GR+IH  +     +  NV V  +LI+MY KC  
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHK-LSVELGLDRNVSVVNSLISMYCKCKE 387

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  A  +F ++  + +V WN+MI+G+A +G   DAL  F++M    +KP   T++ +++A
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            A   + +   ++ + +     ++  V     +V++ ++ G +  A +L+ DM  E    
Sbjct: 448 IAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVT 505

Query: 279 LWGTLLGACRLHG 291
            W  ++     HG
Sbjct: 506 TWNAMIDGYGTHG 518



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L ++T +   YAK  +V  AR +FD M E+D+V WN ++ GY+Q+G+A  AL + + M  
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E ++P+ +T V+VL A   +  +  G+ IH Y   S      V + TAL++MY+KCGSL+
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS-GFDSLVNISTALVDMYAKCGSLE 288

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR +FD + +++VV WNSMI  Y  +   K+A+ +F +M    +KP+D++ +G L ACA
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
             G +  G RF + +  E  ++  V     ++++  +  +V+ A
Sbjct: 349 DLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 131/243 (53%), Gaps = 5/243 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ + + G V  A  +F+ ++ K  V ++ M+ G+A+    ++AL  F RM  + VE
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P       +L  CG    L  G+ IH  +  S    +++   T L NMY+KC  + +AR 
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GFSLDLFAMTGLENMYAKCRQVNEARK 191

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFDR+ ++D+V WN+++ GY+ +G  + AL++   MC   LKPS IT + +L A +   L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRL 251

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G+      M+  +  +  V     +V++ ++ G +E A +L  D  +E + V W ++
Sbjct: 252 ISVGKEIHGYAMRSGF--DSLVNISTALVDMYAKCGSLETARQL-FDGMLERNVVSWNSM 308

Query: 284 LGA 286
           + A
Sbjct: 309 IDA 311



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 31/157 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LDK+++V+T+LVD+YA+ G ++ A  +F  M +R + +   M+  Y   G   AA  LF+
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE 528

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
           +M++                                 ++PN VT ++V+SAC   G +E+
Sbjct: 529 EMQKG-------------------------------TIKPNGVTFLSVISACSHSGLVEA 557

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           G      ++ + +I++++    A++++  + G L +A
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 6/179 (3%)

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           T L++++ + GS+ +A  VF+ ++ K  V++++M+ G+A       ALQ F  M    ++
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           P    F  LL  C     +  G+     + K  ++++  +     + N+ ++  QV EA 
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD--LFAMTGLENMYAKCRQVNEAR 190

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           K V D   E D V W T++     +G   +  ++ + +  +NL  S  ++ + ++  A+
Sbjct: 191 K-VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPS--FITIVSVLPAV 246


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/445 (47%), Positives = 291/445 (65%), Gaps = 14/445 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----- 98
           LTT+L  YAK G++A+AR +FD+M  +DV  WN ++ G AQ    N AL LF R+     
Sbjct: 142 LTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQ 201

Query: 99  -LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
            L  + EPNEVT VA LSAC QIG L+ G ++H + +    +  NV+V  +LI+MYSKCG
Sbjct: 202 ELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRF-GLDRNVRVCNSLIDMYSKCG 260

Query: 158 SLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           SL  A  VF  +   D+ +V +N+ I  ++MHG G DAL+LF+EM   R++P  +T++ +
Sbjct: 261 SLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAV 319

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L  C H+GLV++G R FN+M+    + P ++HYG +V+LL RAG++ EAY  V+ M    
Sbjct: 320 LCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPA 375

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D VLW TLLGA ++HG + L E  A  L        G YVLLSN+YA+   W  V RVR 
Sbjct: 376 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 435

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M+   V+K PG S  E+   +H+F+ GD  HP+ +EIY  LE+I   +   GY P+T  
Sbjct: 436 TMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSN 495

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHDIGE++KQ +L  HSEKLA+AFGLI+T PG +++++KNLR+C DCH V KLISK  G
Sbjct: 496 VLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYG 555

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R I++RDR RFH F +G CSC DYW
Sbjct: 556 RVIVIRDRARFHRFEDGQCSCRDYW 580


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/445 (47%), Positives = 291/445 (65%), Gaps = 14/445 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----- 98
           LTT+L  YAK G++A+AR +FD+M  +DV  WN ++ G AQ    N AL LF R+     
Sbjct: 149 LTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQ 208

Query: 99  -LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
            L  + EPNEVT VA LSAC QIG L+ G ++H + +    +  NV+V  +LI+MYSKCG
Sbjct: 209 ELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRF-GLDRNVRVCNSLIDMYSKCG 267

Query: 158 SLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           SL  A  VF  +   D+ +V +N+ I  ++MHG G DAL+LF+EM   R++P  +T++ +
Sbjct: 268 SLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAV 326

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L  C H+GLV++G R FN+M+    + P ++HYG +V+LL RAG++ EAY  V+ M    
Sbjct: 327 LCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPA 382

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D VLW TLLGA ++HG + L E  A  L        G YVLLSN+YA+   W  V RVR 
Sbjct: 383 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 442

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M+   V+K PG S  E+   +H+F+ GD  HP+ +EIY  LE+I   +   GY P+T  
Sbjct: 443 TMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSN 502

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHDIGE++KQ +L  HSEKLA+AFGLI+T PG +++++KNLR+C DCH V KLISK  G
Sbjct: 503 VLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYG 562

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R I++RDR RFH F +G CSC DYW
Sbjct: 563 RVIVIRDRARFHRFEDGQCSCRDYW 587


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/481 (42%), Positives = 306/481 (63%), Gaps = 7/481 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG---EVAAARV 62
           LD ++ V+T+LV++YA+ G +  A K+F  M  R  V+ +T++  YA  G   +   AR 
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIG 121
           +FD +  +D + WN MI  Y Q+G A  A+ +FR M  A  ++P+ VT +AVL AC  +G
Sbjct: 399 VFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L   + +H+ I  S  ++ NV V   LINMY++CGSL++A  +F    +K VV W +M+
Sbjct: 459 RLSEVKALHAQISES-ELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMV 517

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             ++ +G   +AL LF EM    +KP D+T+  +L  C H G + +G R+F  M + +A+
Sbjct: 518 AAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHAL 577

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P  +H+  MV+LL R+G++ +A +L+  M  EPD V W T L ACR+HG + LGE  AE
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +   + +++  Y+ +SNIYAA G W+ VA VR  M+E+G++K PG S IE+  K+HEF 
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +G   HP++ EI   L  ++G ++A GYVP T+ VLHD+ E +K+  L  HSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757

Query: 422 LISTQ-PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF-VNGTCSCGDY 479
           L+S++  G  I++VKNLRVC DCH   K I++  GR I++RD NRFH F  +G CSCGDY
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDY 817

Query: 480 W 480
           W
Sbjct: 818 W 818



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 151/289 (52%), Gaps = 38/289 (13%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV  T ++  Y K G    AR +FD M+++D+V WNVMI  Y  +G  +EAL L++++  
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDM 301

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E  +  + T V++L AC  + AL  GR +HS+I   R +   V V TAL+NMY+KCGSL+
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILE-RGLDSEVAVATALVNMYAKCGSLE 360

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD---------------------------- 192
           +AR VF+ + ++D V W+++I  YA +G+GKD                            
Sbjct: 361 EARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQ 420

Query: 193 ------ALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
                 A+++F EM     LKP  +TFI +L ACA  G ++E +     +  E  +E  V
Sbjct: 421 NGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQIS-ESELESNV 479

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
                ++N+ +R G +EEA +L    K E   V W  ++ A   +G  A
Sbjct: 480 VVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYA 527



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 136/240 (56%), Gaps = 4/240 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T YA+ G V  A+ +F  ++ +D   WN +I  ++Q G  + AL +F+ M  + V+PN
Sbjct: 148 LVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPN 206

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T + V+S       L  GR IH+ I  +     ++ V TALINMY KCGS  +AR VF
Sbjct: 207 STTYINVISGFSTPEVLPEGRKIHAEIV-ANGFDTDLVVATALINMYGKCGSSHEAREVF 265

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D++  +D+V WN MI  Y ++G   +AL+L+ ++     K +  TF+ +L AC+    + 
Sbjct: 266 DKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G R  ++   E  ++ +V     +VN+ ++ G +EEA K+   MK   D+V W TL+GA
Sbjct: 326 QG-RLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 147/276 (53%), Gaps = 13/276 (4%)

Query: 24  GDVLSA----EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNV 77
           GDV+      E++  +  +R  +    +++ Y K   +  AR +F+ M+  +++VV WN 
Sbjct: 21  GDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNA 80

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           MI  YAQ+G + EALVL+ RM  + +  + VT V+VL AC    +L  GR IH+ +  S 
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC---SSLAQGREIHNRVFYS- 136

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
            +     +  AL+ MY++ GS+ DA+ +F  +  +D   WN++I+ ++  G    AL++F
Sbjct: 137 GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIF 196

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
            EM +  +KP+  T+I ++S  +   ++ EGR+    +      +  +     ++N+  +
Sbjct: 197 KEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDTDLVVATALINMYGK 254

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            G   EA ++   MK + D V W  ++G   L+G+ 
Sbjct: 255 CGSSHEAREVFDKMK-KRDMVSWNVMIGCYVLNGDF 289


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 308/481 (64%), Gaps = 34/481 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD ++YV++SL+D+YA+   V+ + ++F            T+LT           
Sbjct: 326 SIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVF------------TLLT----------- 362

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                   E+D + WN +I G  Q+GL +E L  FR+ML  K++P   +  +++ AC  +
Sbjct: 363 --------ERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHL 414

Query: 121 GALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             L  G+ +H YI  +RN    N+ + ++L++MY+KCG+++ AR +FDR+  +D+V W +
Sbjct: 415 TTLHLGKQLHGYI--TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTA 472

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI+G A+HG   DA++LF +M    ++P+ + F+ +L+AC+HAGLV+E  ++FN+M  ++
Sbjct: 473 MIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDF 532

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I P VEHY  + +LL RAG++EEAY  +  M I P   +W TLL ACR+H N+ + EK+
Sbjct: 533 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKV 592

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A  ++  +  N+G Y+LL+NIY+A   W   A+ R  ++  G++K P CS IE+ NKV+ 
Sbjct: 593 ANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYA 652

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGD  HP  ++I   +E +   ++ EGYVP T  V HD+ E+QK+  +  HSE+LA+ 
Sbjct: 653 FMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIV 712

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+I+T  GT+I++ KNLRVC DCH   K ISK  GR+I++RD +RFHHF NGTCSCGDY
Sbjct: 713 FGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDY 772

Query: 480 W 480
           W
Sbjct: 773 W 773



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 123/236 (52%), Gaps = 3/236 (1%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           V + R +F+ M EKD+V WN +I G A++GL  E L + R M    ++P+  T  +VL  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
             +   +  G+ IH      + +   V V ++LI+MY+KC  + D+  VF  + ++D + 
Sbjct: 310 IAENVDISKGKEIHG-CSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WNS+I G   +G   + L+ F +M   ++KP   +F  ++ ACAH   ++ G++    + 
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYIT 428

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
                +  +     +V++ ++ G +  A ++   M++  D V W  ++  C LHG+
Sbjct: 429 RN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGH 482



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 41/310 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF+ +     + W  +I  Y  HGL +++L  F  MLA  + P+     +VL AC  +  
Sbjct: 64  LFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMD 123

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD-------ARLVFDRVNDKDVV 175
           L  G  +H YI     +  ++  G AL+NMYSK   LK        A  V D + ++   
Sbjct: 124 LNLGESLHGYIIRV-GLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 176 VWN-SMIVGYAMHGFGKDALQLFNE--MCRIRLKPSDITFIGL--------LSAC----- 219
           V   S++VG    G     ++ FN    CR R   + +  I          + AC     
Sbjct: 183 VRTASVLVGN--QGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQ 240

Query: 220 ----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---K 272
               +H+  V+  R+ F  M      E  +  +  ++   +R G   E   +V +M    
Sbjct: 241 IKDISHSMSVDSVRKIFEMMP-----EKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN 295

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS--NIYAAIGNWDGV 330
           ++PDS    ++L     + +I+ G++I    I Q L ++  YV  S  ++YA        
Sbjct: 296 LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGL-DAEVYVASSLIDMYAKCTRVVDS 354

Query: 331 ARVRTLMKEK 340
            RV TL+ E+
Sbjct: 355 YRVFTLLTER 364


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 282/441 (63%), Gaps = 4/441 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +  ++  YAK  +V  AR +FD +  +E+DVV W VMI GY+QHG AN+AL L   M  E
Sbjct: 410 INQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 102 --KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
             +  PN  T    L AC  + AL  G+ IH+Y   ++   V + V   LI+MY+KCG +
Sbjct: 470 DCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDI 529

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            DARLVFD + +K+ V W S++ GY MHG+G++AL +F EM RI  K   +T + +L AC
Sbjct: 530 GDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYAC 589

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H+G++++G  +FN MK ++ + P  EHY C+V+LL RAG++  A +L+ +M +EP  V+
Sbjct: 590 SHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W  LL  CR+HG + LGE  A+ +      N G+Y LLSN+YA  G W  V R+R+LM+ 
Sbjct: 650 WVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRH 709

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           KG++K PGCS +E       F  GD  HP +KEIY +L +    +K  GYVP+T   LHD
Sbjct: 710 KGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHD 769

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + +++K + L  HSEKLA+A+G+++T  G +I+I KNLRVC DCH  F  +S+    +I+
Sbjct: 770 VDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEII 829

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD +RFHHF NG CSC  YW
Sbjct: 830 LRDSSRFHHFKNGLCSCKGYW 850



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 170/302 (56%), Gaps = 23/302 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           ++++V   LVD+YA+ G +  A  +F+ MP + +VS   M+  Y++ G    A  LF+ M
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQM 321

Query: 68  EEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           +E+    DVV W+  I GYAQ GL  EAL + R+ML+  ++PNEVT ++VLS C  +GAL
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 124 ESGRWIHSY-IENSRNIKVNVQ-----VGTALINMYSKCGSLKDARLVFDRVNDK--DVV 175
             G+ IH Y I+   +++ N       V   LI+MY+KC  +  AR +FD ++ K  DVV
Sbjct: 382 MHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVV 441

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEM----CRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            W  MI GY+ HG    AL+L +EM    C+ R  P+  T    L ACA    ++ G++ 
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTR--PNAFTISCALVACASLAALSIGKQI 499

Query: 232 --FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
             +     + A+   V +  C++++ ++ G + +A +LV D  +E + V W +L+    +
Sbjct: 500 HAYALRNQQNAVPLFVSN--CLIDMYAKCGDIGDA-RLVFDNMMEKNEVTWTSLMTGYGM 556

Query: 290 HG 291
           HG
Sbjct: 557 HG 558



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 141/290 (48%), Gaps = 46/290 (15%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEP 105
           ++  Y++ G ++ AR +FD+M   DVV WN +I+ YA+ G    AL +F +M  E    P
Sbjct: 168 LVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRP 227

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +++T V VL  C  +G    G+  H +   S  I+ N+ VG  L++MY+K G + +A  V
Sbjct: 228 DDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQ-NMFVGNCLVDMYAKFGMMDEANTV 286

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM------------------------- 200
           F  +  KDVV WN+M+ GY+  G  +DA++LF +M                         
Sbjct: 287 FSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLG 346

Query: 201 ------CRIRL----KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG- 249
                 CR  L    KP+++T I +LS CA  G +  G+   +    +Y ++ +   +G 
Sbjct: 347 YEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPMDLRKNGHGD 405

Query: 250 ------CMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTLLGACRLHGN 292
                  ++++ ++  +V+ A  +   +   E D V W  ++G    HG+
Sbjct: 406 ENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 10/269 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++ Y   G ++ A  L       D  V  WN +I  Y  +G AN+ L  F  M +    
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T   V  ACG+I ++  G   H+ +        NV VG AL+ MYS+CGSL DAR 
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHA-LSRVTGFMSNVFVGNALVAMYSRCGSLSDARK 183

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           VFD +   DVV WNS+I  YA  G  K AL++F++M      +P DIT + +L  CA  G
Sbjct: 184 VFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVG 243

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             + G++F         I+       C+V++ ++ G ++EA  +  +M ++ D V W  +
Sbjct: 244 TRSLGKQFHGFAVTSEMIQNMFVG-NCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAM 301

Query: 284 LGAC----RLHGNIALGEKIAEYLISQNL 308
           +       R    + L E++ E  I  ++
Sbjct: 302 VAGYSQIGRFEDAVRLFEQMQEEKIKMDV 330



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 32/180 (17%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L+VS  L+D+YA+ GD+  A  +F  M +++ V+ T+++T                    
Sbjct: 513 LFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMT-------------------- 552

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                      GY  HG   EAL +F  M     + + VT + VL AC   G ++ G   
Sbjct: 553 -----------GYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
            + ++    +    +    L+++  + G L  A RL+ +   +   VVW +++    +HG
Sbjct: 602 FNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHG 661


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/441 (43%), Positives = 295/441 (66%), Gaps = 2/441 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SL   T+++  Y K  E+  AR +F++M  +++V W  MI G+A+ G  +EA+ LFR M 
Sbjct: 126 SLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQ 185

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              ++P+ +T V+V+SAC   GAL+ G W+H+YIE    +  ++++ TAL++MY+KCG +
Sbjct: 186 KAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEK-YFVLTDLELSTALVDMYAKCGCI 244

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + A+ VF  +  KD   W+SMI+G+A HG  +DA+  F +M    + P  +TF+ +LSAC
Sbjct: 245 ERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSAC 304

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           AH GLV+ GRRF++ M  E+ IEP VEHYGC V+LL R+G VEEAY++   MKI P++  
Sbjct: 305 AHGGLVSRGRRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAAT 363

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W +LL  C+    + LGE +A YL+     N+  Y+++SN+Y+++  W+ ++ +R +MKE
Sbjct: 364 WRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKE 423

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           K ++  PGCSSIE+   VHEF+ GD  HP+ K +   +EE++  ++  GY P    VLH 
Sbjct: 424 KCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHK 483

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + +++K+ +L  HSE+ A+A+GL+ T+    I++VKNLRVC DCH V K+ISK   R+I+
Sbjct: 484 VVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREII 543

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RDR RFH F+ GTCSC D+W
Sbjct: 544 VRDRVRFHKFIKGTCSCKDFW 564



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 130/239 (54%), Gaps = 5/239 (2%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEKVE-PNEVTAVA 112
           G +  AR +F  +   ++  WN +I GY+Q H L+ E + LF+++       PN  T   
Sbjct: 38  GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           VL AC  + A   G  +HS++        ++ V T+L+N Y KC  +  AR VF+ +  +
Sbjct: 98  VLKACAIVTAFGEGLQVHSHVLKD-GFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVR 156

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           ++V W +MI G+A  G   +A++LF EM +  ++P  +T + ++SACA AG ++ G  + 
Sbjct: 157 NLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG-YWL 215

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +   ++Y +   +E    +V++ ++ G +E A ++ + M ++ D+  W +++     HG
Sbjct: 216 HAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVK-DTTAWSSMIMGFAYHG 273



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 42/226 (18%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGKDALQLFNEMCRIRLK-PSDIT 211
           S  G++  AR VF ++   ++  WNS+I GY+ +H   K+ + LF ++       P+  T
Sbjct: 35  SPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFT 94

Query: 212 FIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVE-----HYG---------------- 249
              +L ACA      EG +   + +KD +     V+      YG                
Sbjct: 95  LAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMP 154

Query: 250 --------CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG-- 296
                    M++  +R G V+EA +L  +M+   I+PD++   +++ AC + G + +G  
Sbjct: 155 VRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYW 214

Query: 297 --EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
               I +Y +  +L  S   V   ++YA  G  +   +V   M  K
Sbjct: 215 LHAYIEKYFVLTDLELSTALV---DMYAKCGCIERAKQVFVHMPVK 257


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/467 (43%), Positives = 308/467 (65%), Gaps = 2/467 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +L+D+YA+ GD+  A ++F  + + R   S   M+  Y K G V  AR LFD ME++D+V
Sbjct: 277 ALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLV 336

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            +N +I GY   G   EAL+LF +M    +  +  T V++L+AC  +GAL  GR +H+ I
Sbjct: 337 TFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACI 396

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           E  R ++V++ +GTAL++MY KCG +++A LVF  ++ +DV  W++MI G A +G GK A
Sbjct: 397 EQ-RLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAA 455

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L+ F  M     +P+ +T+I +L+AC+H+ L++EGR +F  M+  + I P +EHYGCM++
Sbjct: 456 LEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMID 515

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL R+G ++EA  LV  M ++P++V+W ++L ACR+H +  L    AE+L+         
Sbjct: 516 LLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAV 575

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YV L NIY     W+  +++R LM+E+GV+K  G SSI ++ +VH+F+  D  HP+  EI
Sbjct: 576 YVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEI 635

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKI 433
             M+EEI   LK+ GY P T  +  D+ E++K+++L  HSEK+A+AFGLIS  P   + I
Sbjct: 636 TAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHI 695

Query: 434 VKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +KNLRVC DCH+  KLIS+   R+I++RDR+RFHHF +GTCSC D+W
Sbjct: 696 IKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 167/340 (49%), Gaps = 42/340 (12%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VS  ++ +Y   G    A + F  +P +  V+ TT+++  AK G +  A  L      ++
Sbjct: 142 VSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARN 201

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           V+ W  +I GY++ G A EA+  F  ML++ +EP+EVT + +LSAC Q+  L  GR +H 
Sbjct: 202 VISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHK 261

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKD------------------------------ 161
            +   + + ++ ++  ALI+MY+KCG +                                
Sbjct: 262 LV-GEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHV 320

Query: 162 --ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             AR +FD++ D+D+V +NS+I GY   G  ++AL LF +M R  L+  + T + LL+AC
Sbjct: 321 DVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTAC 380

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G + +GR     + ++  +E  +     ++++  + G+VEEA  +   M +  D   
Sbjct: 381 ASLGALPQGRALHACI-EQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHT 438

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYV 315
           W  ++     +G   +G+   EY     +     NS TY+
Sbjct: 439 WSAMIAGLAFNG---MGKAALEYFFWMKVDGFQPNSVTYI 475



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 43/227 (18%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL-------VSL--------------- 44
           D+DL    SL+  Y  GG +  A  LF  M +  L       VSL               
Sbjct: 332 DRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRA 391

Query: 45  -----------------TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
                            T +L  Y K G V  A ++F  M  +DV  W+ MI G A +G+
Sbjct: 392 LHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGM 451

Query: 88  ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
              AL  F  M  +  +PN VT +A+L+AC     L+ GR     +    NI+  ++   
Sbjct: 452 GKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYG 511

Query: 148 ALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
            +I++  + G L +A  LV       + V+W S++    +H   KDA
Sbjct: 512 CMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVH---KDA 555


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/441 (46%), Positives = 290/441 (65%), Gaps = 21/441 (4%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           SL  +T ++  Y K G+V  AR LF+ +++KDV  W+V+I  YA     ++   LF  ML
Sbjct: 326 SLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEML 385

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              V+PN VT V++LS C + GAL+ G+W H+YI N   ++V+V + TALINMY+KCG +
Sbjct: 386 NNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYI-NRHGLEVDVILETALINMYAKCGDV 444

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             AR +F+    +D+ +WN+M+ G++MHG GK+AL+LF+EM    ++P+DITF+ +  AC
Sbjct: 445 TIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHAC 504

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H+GL+                    EHYGC+V+LL RAG ++EA+ ++ +M + P++++
Sbjct: 505 SHSGLM--------------------EHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTII 544

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           WG LL AC+LH N+ALGE  A  ++  +  N G  VL SNIYA+   W+ V  VR  M  
Sbjct: 545 WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSH 604

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
            G++KEPG S IE+S  VH F +GD    ++ ++Y M+ E+   L+  GY P T  VL +
Sbjct: 605 SGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLN 664

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           I E++K+++L  HSEKLA AFGLIST PGT I+IVKNLR+C DCHA  KL+SK  GR I+
Sbjct: 665 IDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTII 724

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RDRNRFHHF  G CSC  YW
Sbjct: 725 VRDRNRFHHFSEGYCSCMGYW 745



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 145/251 (57%), Gaps = 4/251 (1%)

Query: 42  VSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           VS+TT ++  Y K G +A+A+ LFD + ++ VV W VMI G  +    +E    F RML 
Sbjct: 226 VSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLE 285

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           EK+ PNE+T +++++ CG +G L+ G+W H+Y+  +    +++ + TALI+MY KCG + 
Sbjct: 286 EKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRN-GFGMSLALVTALIDMYGKCGQVG 344

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR +F+ V  KDV +W+ +I  YA          LF EM    +KP+++T + LLS CA
Sbjct: 345 YARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCA 404

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            AG ++ G ++ +   + + +E  V     ++N+ ++ G V  A  L  +  ++ D  +W
Sbjct: 405 EAGALDLG-KWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSL-FNEAMQRDIRMW 462

Query: 281 GTLLGACRLHG 291
            T++    +HG
Sbjct: 463 NTMMAGFSMHG 473



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K G + +AR++FD M E+DVV W  M+  Y +     EAL L R M    V+ +
Sbjct: 129 LMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLS 188

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            V  +++++  G +  ++SGR +H YI  N  + K+ V + TALI+MY K G L  A+ +
Sbjct: 189 GVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRL 248

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR++ + VV W  MI G        +  + FN M   +L P++IT + L++ C   G +
Sbjct: 249 FDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTL 308

Query: 226 NEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + G+ F    +++ + +   +     ++++  + GQV  A  L   +K + D  +W  L+
Sbjct: 309 DLGKWFHAYLLRNGFGMSLAL--VTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLI 365

Query: 285 GA 286
            A
Sbjct: 366 SA 367



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 47/310 (15%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYI 133
           +N++I  Y  + L   +   +  M +      +     ++L AC Q  + + GR +H + 
Sbjct: 55  YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFA 114

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           + +     +V V  AL+NMY KCG L  ARLVFD++ ++DVV W +M+  Y       +A
Sbjct: 115 QKN-GFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEA 173

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAH-------------------------------- 221
           L+L  EM  + +K S +  I L++   +                                
Sbjct: 174 LRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALI 233

Query: 222 -----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
                 G +   +R F+ +     +   V   GC+ +   R  +  + +  +++ K+ P+
Sbjct: 234 DMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRS--CRLDEGAKNFNRMLEEKLFPN 291

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL-LSNIYAAIGNWDGVARVRT 335
            +   +L+  C   G + LG+    YL+      S   V  L ++Y   G    V   R 
Sbjct: 292 EITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQ---VGYARA 348

Query: 336 LMKEKGVQKE 345
           L    GV+K+
Sbjct: 349 LF--NGVKKK 356



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 52/186 (27%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +  L+ D+ + T+L+++YA+ GDV  A  LF    QR +    TM+              
Sbjct: 421 RHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMA------------- 467

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                             G++ HG   EAL LF  M +  VEPN++T V++  AC   G 
Sbjct: 468 ------------------GFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL 509

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
           +E                     G  L+++  + G L +A  + + +  + + ++W +++
Sbjct: 510 ME-------------------HYG-CLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALL 549

Query: 182 VGYAMH 187
               +H
Sbjct: 550 AACKLH 555


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/486 (43%), Positives = 308/486 (63%), Gaps = 23/486 (4%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK    +D YV  +L+D+Y+R G +  +E +F +M  R  VS  TM+T Y   G  + A 
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNAL 486

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           VL  +M+  +        D   + G                 +PN +T + VL  C  + 
Sbjct: 487 VLLHEMQRMENTKDVKKDDNDDEKG--------------GPYKPNAITLMTVLPGCAALA 532

Query: 122 ALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           A+  G+ IH+Y I N   +  ++ VG+AL++MY+KCG L  +R VF+ + +K+V+ WN +
Sbjct: 533 AIAKGKEIHAYAIRNM--LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVL 590

Query: 181 IVGYAMHGFGKDALQLFNEMCRI-----RLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
           I+   MHG G++AL+LF  M          KP+++TFI + +AC+H+GL++EG   F  M
Sbjct: 591 IMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRM 650

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHGNIA 294
           K ++ +EP  +HY C+V+LL RAGQ+EEAY+LV  M  E D V  W +LLGACR+H N+ 
Sbjct: 651 KHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVE 710

Query: 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           LGE  A+ L+      +  YVLLSNIY++ G W+    VR  M++ GV+KEPGCS IE  
Sbjct: 711 LGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFR 770

Query: 355 NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSE 414
           ++VH+F+AGD+ HP+S++++  LE ++  ++ EGYVP T  VLH++ E +K+N L  HSE
Sbjct: 771 DEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSE 830

Query: 415 KLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTC 474
           KLA+AFG+++T PGT+I++ KNLRVC DCHA  K ISK   R+I++RD  RFHHF  GTC
Sbjct: 831 KLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTC 890

Query: 475 SCGDYW 480
           SCGDYW
Sbjct: 891 SCGDYW 896



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 136/250 (54%), Gaps = 11/250 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V  ++ LF+   ++D+V WN MI  ++Q    +EAL  FR M+ E VE +
Sbjct: 237 LMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELD 296

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT  +VL AC  +  L+ G+ IH+Y+  + ++  N  VG+AL++MY  C  ++  R VF
Sbjct: 297 GVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVF 356

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLV 225
           D +  + + +WN+MI GYA +G  + AL LF EM ++  L P+  T   ++ AC H    
Sbjct: 357 DHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAF 416

Query: 226 NEGRRFFNTMKDEYAIEP--KVEHY--GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           +            YA++   K + Y    ++++ SR G+++ +  +   M++  D V W 
Sbjct: 417 SNKESIHG-----YAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWN 470

Query: 282 TLLGACRLHG 291
           T++    L G
Sbjct: 471 TMITGYVLSG 480



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 142/330 (43%), Gaps = 58/330 (17%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F+    L   + L DL  + G+ + A  +       S+    T++  Y K G +     +
Sbjct: 93  FAFPAVLKAVSGLQDL--KTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKV 150

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG-- 121
           FD + ++D V WN  I    +     +AL  FR M  E +E +  T V+V  AC  +G  
Sbjct: 151 FDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM 210

Query: 122 -ALESGRWIHSYIENSRNIKVNVQ---VGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             L  G+ +H Y     +++V  Q      AL+ MY+K G + D++ +F+   D+D+V W
Sbjct: 211 HGLRLGKQLHGY-----SLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSW 265

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH---------------- 221
           N+MI  ++      +AL  F  M    ++   +T   +L AC+H                
Sbjct: 266 NTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLR 325

Query: 222 -----------AGLVN---------EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
                      + LV+          GRR F     ++ +  ++E +  M++  +R G  
Sbjct: 326 NNDLIENSFVGSALVDMYCNCRQVESGRRVF-----DHILGRRIELWNAMISGYARNGLD 380

Query: 262 EEAYKLVMDM----KIEPDSVLWGTLLGAC 287
           E+A  L ++M     + P++    +++ AC
Sbjct: 381 EKALILFIEMIKVAGLLPNTTTMASVMPAC 410



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 6/200 (3%)

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           EA+  +  M      P+     AVL A   +  L++G  IH+          +V V   L
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +NMY KCG + D   VFDR+ D+D V WNS I         + AL+ F  M    ++ S 
Sbjct: 135 VNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSS 194

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI---EPKVEHYGCMVNLLSRAGQVEEAYK 266
            T + +  AC++ G+++ G R    +   Y++   + K      ++ + ++ G+V+++ K
Sbjct: 195 FTLVSVALACSNLGVMH-GLRLGKQLHG-YSLRVGDQKTFTNNALMAMYAKLGRVDDS-K 251

Query: 267 LVMDMKIEPDSVLWGTLLGA 286
            + +  ++ D V W T++ +
Sbjct: 252 ALFESFVDRDMVSWNTMISS 271


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/473 (44%), Positives = 300/473 (63%), Gaps = 1/473 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           K++    +++  Y   GD+ SA KLF   P +S+V+ T M+T Y K G +  A  LF+ M
Sbjct: 98  KNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKM 157

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            EK++V WN MI GY ++  A + + LFR M+   ++PN  T  + L  C ++ AL+ GR
Sbjct: 158 PEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGR 217

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H  +  S  +  +   GT+LI+MY KCG L+D   +F +V  +DVV WN+MI GYA H
Sbjct: 218 QVHQLVCKS-PLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQH 276

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G GK AL LF+EM    +KP  ITF+ +L AC HAG  + G ++F++M  +Y +  K +H
Sbjct: 277 GEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDH 336

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL RAG++ EA  L+  M  +P + ++GTLLGACR+H N  + E  ++ L++ +
Sbjct: 337 YTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLD 396

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
            A++  YV L+N+YAA   WD VARVR  MK   V K PG S IE+ +  H+F +GD  H
Sbjct: 397 PASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFH 456

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+   I+  L+E+   +K  GYVP  +  LHD+GE+QK+  L  HSEKLA+A+GLI   P
Sbjct: 457 PELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPP 516

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GT I++ KNLRVC DCH   K IS+   R+I++RD  RFHHF +G CSC DYW
Sbjct: 517 GTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 161/345 (46%), Gaps = 15/345 (4%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           +L   +  ++ L  +  + G +  A++LF  +P+   VS  TML+CY +   +  A+  F
Sbjct: 2   TLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFF 61

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           +DM  KD   WN MI G+AQ+   ++A  LF  M  + V    VT  A++S   + G L+
Sbjct: 62  EDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGYVECGDLD 117

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           S   +       +    +V   TA+I  Y K G +  A  +F+++ +K++V WN+MI GY
Sbjct: 118 SALKLF-----EKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGY 172

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             +   +D ++LF  M    ++P+  T    L  C+    +  GR+    +      +  
Sbjct: 173 IENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDT 232

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
                 ++++  + G +E+ +KL + +    D V W  ++     HG       + + +I
Sbjct: 233 TAGTS-LISMYCKCGVLEDGWKLFVQVP-RRDVVTWNAMISGYAQHGEGKKALGLFDEMI 290

Query: 305 SQNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            + +     +   VL++  +A   +  GV    ++ K+ G+  +P
Sbjct: 291 EKGMKPDWITFVAVLMACNHAGFTDL-GVKYFHSMAKDYGLVAKP 334



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 33/161 (20%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L  D    TSL+ +Y + G +    KLF  +P+R +V+   M++ YA+ GE   A  
Sbjct: 225 KSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALG 284

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD+M EK                                ++P+ +T VAVL AC   G 
Sbjct: 285 LFDEMIEKG-------------------------------MKPDWITFVAVLMACNHAGF 313

Query: 123 LESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            + G ++ HS +     +       T ++++  + G L +A
Sbjct: 314 TDLGVKYFHS-MAKDYGLVAKPDHYTCMVDLLGRAGKLVEA 353



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 28/237 (11%)

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
            +K  V   + L  M  K G LK+A+ +F ++ + D V +N+M+  Y  +   + A   F
Sbjct: 2   TLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFF 61

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
            +M  I+  PS  T I   +  A    +++ R  F  M  +  +      +  M++    
Sbjct: 62  EDM-PIKDTPSWNTMI---TGFAQNQQMDKARDLFLIMPTKNVVT-----WNAMISGYVE 112

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-- 315
            G ++ A KL      +   V W  ++      G I L E++ E +  +NL      +  
Sbjct: 113 CGDLDSALKLFEKAPFK-SVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAG 171

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEP--------GC---SSIELSNKVHEFL 361
            + N  A     DGV   RT++   G+Q           GC   S+++L  +VH+ +
Sbjct: 172 YIENHRAE----DGVKLFRTMVGF-GIQPNSSTLSSALLGCSELSALQLGRQVHQLV 223


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/474 (43%), Positives = 307/474 (64%), Gaps = 14/474 (2%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V  S+V +Y   G++  A ++F  MP R +VS  +M+  Y K GE+  A  LFD+M 
Sbjct: 143 DPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMP 202

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+D+V  N MIDGY             + ML+  + P+    V+VLSA   +G +E G+W
Sbjct: 203 ERDLVSCNAMIDGYG------------KEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKW 250

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
           +H+Y+  ++    +  +G+ALI+MYSKCG +++A  VF  ++ + ++  WNSMI G A+H
Sbjct: 251 LHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH 310

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL +F EM R+ ++P++ITF+GLLS C+H GLV EG+ +F +M ++Y I P+++H
Sbjct: 311 GLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQH 370

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGCM++L  RAG++E+A  ++ +M  E D + W  +L A   HG+I +G+  A   I   
Sbjct: 371 YGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELA 430

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLR 366
             +S +YVLLSNIYA  G WD VA++R +M+++GV+K  GCSS+ ++ KVHEFL G +L 
Sbjct: 431 PDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELD 490

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
              S ++   + E+   LK +GY P    VL DI ++ K++ L +HSEK+A+AFGLI   
Sbjct: 491 SSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHIN 550

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I IVKNLRVC DCH   KL+SK   R+I+MRD+NRFHHF NG CSC +YW
Sbjct: 551 KSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 24/276 (8%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++  L    +     G +  A  +F  ++  +   +  +I G++      E+L+L+ R
Sbjct: 38  QFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYAR 97

Query: 98  MLA--EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           ML+        E +  +VL ACG++ A + GR +H  +  + ++  +  VG +++ MY  
Sbjct: 98  MLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKT-HLWFDPFVGNSMVRMYID 156

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN----------------- 198
            G ++ AR VFDR+ ++DVV WNSMI GY   G  + A +LF+                 
Sbjct: 157 FGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGY 216

Query: 199 --EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLL 255
             EM  + L+P     + +LSA A  G V EG ++ +       IE      G  ++++ 
Sbjct: 217 GKEMLSLGLRPDGPAIVSVLSAIADLGFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMY 275

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           S+ G +E AY +   +    +   W +++    +HG
Sbjct: 276 SKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHG 311


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/476 (43%), Positives = 306/476 (64%), Gaps = 5/476 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLF 64
           D    T+++   AR G +   +++ A   +  LVS       ++  Y+K G +  AR +F
Sbjct: 330 DRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVF 389

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D M ++DVV W  ++  YA      E+   F++ML + V+ N++T + VL AC    AL+
Sbjct: 390 DRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALK 449

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G+ IH+ +  +  +  ++ V  AL++MY KCGS++DA  VF+ ++ +DVV WN++I G 
Sbjct: 450 WGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGL 508

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
             +G G +ALQ +  M    ++P+  TF+ +LSAC    LV EGRR F  M  +Y I P 
Sbjct: 509 GQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPT 568

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV++L+RAG + EA  +++ + ++P + +WG LL ACR+H N+ +GE+ AE+ +
Sbjct: 569 EKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCL 628

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                N+G YV LS IYAA G W  VA++R  MKE+GV+KEPG S IE++ +VH F+A D
Sbjct: 629 KLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARD 688

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP+++EIY  LE +   +K+ GYVP T+ V+HD+ ++ K+ ++  HSEKLA+A+GLIS
Sbjct: 689 QSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLIS 748

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T PGT I+I KNLRVC DCH   K ISK T R+I+ RD +RFHHF NG CSCGDYW
Sbjct: 749 TPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 172/331 (51%), Gaps = 35/331 (10%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T+L  YA  G V  AR LFD    K VV WNVMI GYA  GLA EA  LF  M  E++EP
Sbjct: 68  TLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEP 127

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           ++ T V++LSAC     L  GR IH  +  +  +  +  VG ALI+MY+KCGS++DAR V
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEA-GLANDTTVGNALISMYAKCGSVRDARRV 186

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD +  +D V W ++   YA  G+G+++L+ ++ M + R++PS IT++ +LSAC     +
Sbjct: 187 FDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAAL 246

Query: 226 NEGRRFF-NTMKDEYAIEPKV------------------EHYGC-----------MVNLL 255
            +G++   + ++ EY  + +V                  E + C           M+   
Sbjct: 247 EKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGF 306

Query: 256 SRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
             +GQ+EEA   +  +++  + PD   + T+L AC   G +A G++I        L +  
Sbjct: 307 VDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDV 366

Query: 313 TY-VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            +   L N+Y+  G+     +V   M ++ V
Sbjct: 367 RFGNALINMYSKAGSMKDARQVFDRMPKRDV 397



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 5/240 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +++ YAK G V  AR +FD M  +D V W  +   YA+ G   E+L  +  ML E+V P+
Sbjct: 170 LISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPS 229

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T + VLSACG + ALE G+ IH++I  S     +V+V TAL  MY KCG+ KDAR VF
Sbjct: 230 RITYMNVLSACGSLAALEKGKQIHAHIVES-EYHSDVRVSTALTKMYMKCGAFKDAREVF 288

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           + ++ +DV+ WN+MI G+   G  ++A   F+ M    + P   T+  +LSACA  G + 
Sbjct: 289 ECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLA 348

Query: 227 EGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G+       KD   +   V     ++N+ S+AG +++A + V D   + D V W TLLG
Sbjct: 349 RGKEIHARAAKD--GLVSDVRFGNALINMYSKAGSMKDA-RQVFDRMPKRDVVSWTTLLG 405



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 35/308 (11%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ VST+L  +Y + G    A ++F  +  R +++  TM                     
Sbjct: 264 DVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTM--------------------- 302

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                     I G+   G   EA   F RML E V P+  T   VLSAC + G L  G+ 
Sbjct: 303 ----------IRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH+       +  +V+ G ALINMYSK GS+KDAR VFDR+  +DVV W +++  YA   
Sbjct: 353 IHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCD 411

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
              ++   F +M +  +K + IT++ +L AC++   +  G+     +  +  +   +   
Sbjct: 412 QVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVV-KAGLLADLAVT 470

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++++  + G VE+A ++   M +  D V W TL+G    +G      +  E + S+ +
Sbjct: 471 NALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGM 529

Query: 309 -ANSGTYV 315
             N+ T+V
Sbjct: 530 RPNAATFV 537



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 98/177 (55%), Gaps = 5/177 (2%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V +L +C +   L  G+ +H +I     +K NV +   L+ +Y+ CGS+ +AR +FD+ +
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRC-GVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +K VV WN MI GYA  G  ++A  LF  M + RL+P   TF+ +LSAC+   ++N GR 
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 231 F-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                M+   A +  V +   ++++ ++ G V +A + V D     D V W TL GA
Sbjct: 151 IHVRVMEAGLANDTTVGN--ALISMYAKCGSVRDARR-VFDAMASRDEVSWTTLTGA 204


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/447 (48%), Positives = 292/447 (65%), Gaps = 18/447 (4%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----- 98
           +TT++  YAK G++A+AR +FD+M  +DV  WN ++ G AQ      AL LF R+     
Sbjct: 156 ITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFHRLVGSFR 215

Query: 99  -LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTALINMYSK 155
            L  + EPNEVT VA LSAC QIG+L+ G ++H +   +R I VN  V+V  ALI+MYSK
Sbjct: 216 ELPPREEPNEVTIVAALSACAQIGSLQDGLYVHEF---ARKIGVNGNVRVCNALIDMYSK 272

Query: 156 CGSLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           CGSL  A  VF  +   D+ +V +N+ I   +MHG G DAL+LF+EM    ++P ++T+I
Sbjct: 273 CGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMPTF-IEPDEVTYI 331

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L  C HAGLV++G R F++M+    + P V+HYG +V+LL RAG++ EAY  ++ M  
Sbjct: 332 AVLCGCNHAGLVDDGLRVFHSMR----VLPNVKHYGAVVDLLGRAGRLAEAYDTIVSMPF 387

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
             D VLW TLLGA + HG++ L E  A  L        G YVLLSN+YA+   W  V RV
Sbjct: 388 PADIVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASKARWADVRRV 447

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           R  M+   V+K PG S  E+S  +H+F+ GD  HP+ +EIY  LEEI   +   GY P+T
Sbjct: 448 RDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEIYRALEEIVSRIGELGYEPET 507

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VLHDIGE++KQ +L  HSEKLA+AFGLI+T PG +++++KNLR C DCH V KLISK 
Sbjct: 508 SNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNLRTCGDCHVVAKLISKA 567

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            GR I++RDR RFH F +G CSC DYW
Sbjct: 568 YGRVIIIRDRARFHQFEDGQCSCKDYW 594



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V++ T L++ Y+KCG L  AR VFD +  +DV  WN+++ G A       AL LF+ + 
Sbjct: 152 DVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFHRLV 211

Query: 202 ------RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
                   R +P+++T +  LSACA  G + +G  + +    +  +   V     ++++ 
Sbjct: 212 GSFRELPPREEPNEVTIVAALSACAQIGSLQDG-LYVHEFARKIGVNGNVRVCNALIDMY 270

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVL-WGTLLGACRLHGN 292
           S+ G ++ A ++   +K E  +++ + T + A  +HG+
Sbjct: 271 SKCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGH 308


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/481 (44%), Positives = 307/481 (63%), Gaps = 3/481 (0%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   + +LYV  S++++ +    +  A K+F  M +R + S T++L  YAK GE+  A 
Sbjct: 205 VKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRAC 264

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            LF+ M  ++ V W VMI G+   G   EAL  F  ML + +V PNE   V VLSAC  +
Sbjct: 265 ELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHL 324

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GAL+ G WIH YI+    I+ +  + TALI+MY+KCG +  A  VF+ +  +DV+ + SM
Sbjct: 325 GALDQGNWIHLYIDKI-GIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSM 383

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G + HG GKDAL++F +M    + P++IT +G+L+ C+H+GLV EG      M+  + 
Sbjct: 384 ISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWG 443

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I PK+EHYGC ++LL RAG +E A ++V  M +EPD V+W  LL A R+H N+ LGE+I 
Sbjct: 444 IAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQII 503

Query: 301 EYLIS-QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
            ++   ++  ++G  VLLSN+YA++G W+ V  +R LM ++  +  PGCS IE++  VHE
Sbjct: 504 SHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHE 563

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F   D  HP+  EI   L EI   L   GY   T  V  D+ E++K+ ++  HSEKLA+A
Sbjct: 564 FRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIA 623

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FGL+ST+PGT I+IVKNLR C DCH+  K IS+  GR+I++RDR+RFH F+ G CSC D+
Sbjct: 624 FGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDF 683

Query: 480 W 480
           W
Sbjct: 684 W 684



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 42/288 (14%)

Query: 43  SLT-TMLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRML 99
           SLT +++ CY        AR+LFD        +  WNVMI  Y++   + E + LF RML
Sbjct: 107 SLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRML 166

Query: 100 A----EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
                 +V P+E T   V+++C    +L  G  +H  +  S   + N+ VG ++INM S 
Sbjct: 167 TLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKS-GFESNLYVGNSVINMCSV 225

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--------------- 200
              ++DAR VF++++++DV  W S++ GYA HG    A +LFN M               
Sbjct: 226 FARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGF 285

Query: 201 -----------------CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
                            C  R+ P++   + +LSACAH G +++G  + +   D+  I  
Sbjct: 286 LGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQG-NWIHLYIDKIGIRQ 344

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                  ++++ ++ G+++ A + V +   + D + + +++     HG
Sbjct: 345 SSNISTALIDMYAKCGRIDCASR-VFNGICKRDVLSFTSMISGLSYHG 391


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/438 (45%), Positives = 293/438 (66%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G++  AR +F+ + E+DVV    +I GYAQ GL  EAL LFRR+  E ++
Sbjct: 404 SSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMK 463

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT   VL+A   + AL+ G+ +H+++  S  I   V +  +LI+MYSKCG+L  +R 
Sbjct: 464 SNYVTYTGVLTALSGLAALDLGKQVHNHVLRSE-IPSFVVLQNSLIDMYSKCGNLTYSRR 522

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAG 223
           +FD + ++ V+ WN+M+VGY+ HG G++ L+LF  M    ++KP  +T + +LS C+H G
Sbjct: 523 IFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGG 582

Query: 224 LVNEGRRFFNTMKD-EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           L ++G   FN M   +  +EPK+EHYGC+V+LL R+G+VEEA++ +  M  EP + +WG+
Sbjct: 583 LEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGS 642

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR+H N+ +GE   + L+     N+G YV+LSN+YA+ G W+ V+ +R LM +K V
Sbjct: 643 LLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTV 702

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG SSIEL   +H F A D  HP+ +EI M ++E++   K  GYVP    VLHD+ E
Sbjct: 703 TKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDE 762

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L  HSEKLA++FGLI++     I+++KNLR+C DCH   K ISK  GR++ +RD
Sbjct: 763 EQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRD 822

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFH  V G CSC DYW
Sbjct: 823 KNRFHRIVGGKCSCEDYW 840



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 136/269 (50%), Gaps = 26/269 (9%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF--------- 95
           T ++  Y K   +  A  +FD+M E++VV W  MI  Y+Q G A++AL LF         
Sbjct: 282 TRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLT 341

Query: 96  ------RRMLAEK------VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
                 +  L+         EPNE T   VL++C        GR IHS I    N + +V
Sbjct: 342 GVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIK-LNYEDHV 400

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            VG++L++MY+K G + +AR VF+ + ++DVV   ++I GYA  G  ++AL+LF  +   
Sbjct: 401 FVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGE 460

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
            +K + +T+ G+L+A +    ++ G++  N  ++ E  I   V     ++++ S+ G + 
Sbjct: 461 GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSE--IPSFVVLQNSLIDMYSKCGNLT 518

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            + + + D   E   + W  +L     HG
Sbjct: 519 YSRR-IFDTMYERTVISWNAMLVGYSKHG 546



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 129/289 (44%), Gaps = 62/289 (21%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A+L+ C    A   G+ +H+++  +R +  +V + T LI +Y+KC SL DA  VFD + +
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTRYLP-SVFLRTRLIVLYTKCDSLGDAHNVFDEMPE 306

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL---------------------KPSDI 210
           ++VV W +MI  Y+  G+   AL LF    +I L                     +P++ 
Sbjct: 307 RNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEF 366

Query: 211 TFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYAIEPKVEH----YGCM 251
           TF  +L++C  +     GR+                 +++ D YA + K+      + C+
Sbjct: 367 TFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECL 426

Query: 252 -----------VNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGE 297
                      ++  ++ G  EEA +L   ++   ++ + V +  +L A      + LG+
Sbjct: 427 PERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGK 486

Query: 298 KIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLMKEKGV 342
           ++  +++   +    ++V+L N    +Y+  GN     R+   M E+ V
Sbjct: 487 QVHNHVLRSEIP---SFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTV 532


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/441 (44%), Positives = 281/441 (63%), Gaps = 4/441 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +  ++  YAK  +V  AR +FD +  +E+DVV W VMI GY+QHG AN+AL L   M  E
Sbjct: 410 INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469

Query: 102 --KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
             +  PN  T    L AC  + AL  G+ IH+Y   ++   V + V   LI+MY+KCGS+
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            DARLVFD +  K+ V W S++ GY MHG+G++AL +F+EM RI  K   +T + +L AC
Sbjct: 530 SDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYAC 589

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H+G++++G  +FN MK  + + P  EHY C+V+LL RAG++  A +L+ +M +EP  V+
Sbjct: 590 SHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W   L  CR+HG + LGE  AE +      + G+Y LLSN+YA  G W  V R+R+LM+ 
Sbjct: 650 WVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRH 709

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           KGV+K PGCS +E       F  GD  HP +KEIY +L +    +K  GYVP+T   LHD
Sbjct: 710 KGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHD 769

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + +++K + L  HSEKLA+A+G+++T  G +I+I KNLRVC DCH  F  +S+     I+
Sbjct: 770 VDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDII 829

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD +RFHHF NG+CSC  YW
Sbjct: 830 LRDSSRFHHFKNGSCSCKGYW 850



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 23/302 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           ++++V   LVD+YA+ G +  A  +F+ M  + +VS   M+  Y++ G    A  LF+ M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321

Query: 68  EEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           +E+    DVV W+  I GYAQ GL  EAL + R+ML+  ++PNEVT ++VLS C  +GAL
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381

Query: 124 ESGRWIHSY-IENSRNIKVNVQ-----VGTALINMYSKCGSLKDARLVFDRVNDK--DVV 175
             G+ IH Y I+   +++ N       V   LI+MY+KC  +  AR +FD ++ K  DVV
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEM----CRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            W  MI GY+ HG    AL+L +EM    C+ R  P+  T    L ACA    +  G++ 
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTR--PNAFTISCALVACASLAALRIGKQI 499

Query: 232 --FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
             +     + A+   V +  C++++ ++ G + +A +LV D  +  + V W +L+    +
Sbjct: 500 HAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDA-RLVFDNMMAKNEVTWTSLMTGYGM 556

Query: 290 HG 291
           HG
Sbjct: 557 HG 558



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 46/290 (15%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEP 105
           ++  Y++   ++ AR +FD+M   DVV WN +I+ YA+ G    AL +F RM  E    P
Sbjct: 168 LVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRP 227

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + +T V VL  C  +G    G+ +H +   S  I+ N+ VG  L++MY+KCG + +A  V
Sbjct: 228 DNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTV 286

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM------------------------- 200
           F  ++ KDVV WN+M+ GY+  G  +DA++LF +M                         
Sbjct: 287 FSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLG 346

Query: 201 ------CRIRL----KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG- 249
                 CR  L    KP+++T I +LS CA  G +  G+   +    +Y I+ +   +G 
Sbjct: 347 YEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHGD 405

Query: 250 ------CMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTLLGACRLHGN 292
                  ++++ ++  +V+ A  +   +   E D V W  ++G    HG+
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 10/269 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++ Y   G ++ A  L       D  V  WN +I  Y  +G AN+ L LF  M +    
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T   V  ACG+I ++  G   H+    +  I  NV VG AL+ MYS+C SL DAR 
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFIS-NVFVGNALVAMYSRCRSLSDARK 183

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           VFD ++  DVV WNS+I  YA  G  K AL++F+ M      +P +IT + +L  CA  G
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             + G++          I+       C+V++ ++ G ++EA  +  +M ++ D V W  +
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVG-NCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAM 301

Query: 284 LGAC----RLHGNIALGEKIAEYLISQNL 308
           +       R    + L EK+ E  I  ++
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 32/180 (17%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L+VS  L+D+YA+ G +  A  +F  M  ++ V+ T+++T                    
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT-------------------- 552

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                      GY  HG   EAL +F  M     + + VT + VL AC   G ++ G   
Sbjct: 553 -----------GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
            + ++    +    +    L+++  + G L  A RL+ +   +   VVW + +    +HG
Sbjct: 602 FNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHG 661


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/438 (45%), Positives = 282/438 (64%), Gaps = 4/438 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK 102
           ++  YAK      AR +FD +  +++DVV W VMI GYAQHG AN AL LF  M  + + 
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           ++PN+ T    L AC ++ AL  GR +H+Y+  +    V + V   LI+MYSK G +  A
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA 668

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           ++VFD +  ++ V W S++ GY MHG G+DAL++F+EM ++ L P  ITF+ +L AC+H+
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+V+ G  FFN M  ++ ++P  EHY CMV+L  RAG++ EA KL+ +M +EP  V+W  
Sbjct: 729 GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVA 788

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACRLH N+ LGE  A  L+     N G+Y LLSNIYA    W  VAR+R  MK  G+
Sbjct: 789 LLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGI 848

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCS I+    V  F  GD  HP+S++IY  L ++   +KA GYVPQT   LHD+ +
Sbjct: 849 KKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDD 908

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K + L  HSEKLA+A+G+++  P   I+I KNLR+C DCH+    ISK    +I++RD
Sbjct: 909 EEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRD 968

Query: 463 RNRFHHFVNGTCSCGDYW 480
            +RFHHF NG+CSC  YW
Sbjct: 969 SSRFHHFKNGSCSCKGYW 986



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 170/306 (55%), Gaps = 16/306 (5%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  L  D++V  ++VD+YA+ G +  A K+F  M  + +VS   M+T Y++ G +  A
Sbjct: 390 SIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHA 449

Query: 61  RVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
             LF+ M E+    DVV W  +I GYAQ G   EAL +FR+M      PN VT V++LSA
Sbjct: 450 LSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSA 509

Query: 117 CGQIGALESGRWIHSY-------IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
           C  +GAL  G+  H Y       ++       +++V   LI+MY+KC S + AR +FD V
Sbjct: 510 CVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSV 569

Query: 170 N--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPSDITFIGLLSACAHAGLV 225
           +  D+DVV W  MI GYA HG   +ALQLF+ M ++   +KP+D T    L ACA    +
Sbjct: 570 SPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAAL 629

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             GR+    +   +     +    C++++ S++G V+ A ++V D   + ++V W +L+ 
Sbjct: 630 RFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA-QIVFDNMPQRNAVSWTSLMT 688

Query: 286 ACRLHG 291
              +HG
Sbjct: 689 GYGMHG 694



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 158/380 (41%), Gaps = 87/380 (22%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +++ Y K G +  A  +FDD+  +   D+V WN ++  Y     AN AL LF +M    +
Sbjct: 300 VVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHL 359

Query: 104 -EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+ ++ V +L AC  + A   GR +H +   S  +  +V VG A+++MY+KCG +++A
Sbjct: 360 MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD-DVFVGNAVVDMYAKCGKMEEA 418

Query: 163 RLVFDRVNDKDVVVWNSM-----------------------------------IVGYAMH 187
             VF R+  KDVV WN+M                                   I GYA  
Sbjct: 419 NKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQR 478

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------------ 229
           G G +AL +F +MC    +P+ +T + LLSAC   G +  G+                  
Sbjct: 479 GQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDP 538

Query: 230 -----RFFNTMKDEYA--------------IEPK---VEHYGCMVNLLSRAGQVEEAYKL 267
                +  N + D YA              + PK   V  +  M+   ++ G    A +L
Sbjct: 539 GADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQL 598

Query: 268 V-----MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNI 320
                 MD  I+P+       L AC     +  G ++  Y++     +   +V   L ++
Sbjct: 599 FSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDM 658

Query: 321 YAAIGNWDGVARVRTLMKEK 340
           Y+  G+ D    V   M ++
Sbjct: 659 YSKSGDVDTAQIVFDNMPQR 678



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 13/267 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T ++  Y      A A +L + +      V  WN +I      G   +   L+R+M +  
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+  T   V  AC  + +L  G  +H+ +  S     NV V  A+++MY KCG+L+ A
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRS-GFASNVFVCNAVVSMYGKCGALRHA 313

Query: 163 RLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSA 218
             +FD +  +   D+V WNS++  Y        AL LF++M  R  + P  I+ + +L A
Sbjct: 314 HNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPA 373

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA       GR+  +       +   V     +V++ ++ G++EEA K+   MK + D V
Sbjct: 374 CASLAASLRGRQ-VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK-DVV 431

Query: 279 LWGTLLG----ACRLHGNIALGEKIAE 301
            W  ++     A RL   ++L E++ E
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTE 458



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 32/179 (17%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L+V+  L+D+Y++ GDV +A+ +F  MPQR+ VS T+++T Y   G    A  +FD+M +
Sbjct: 649 LFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRK 708

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
             +V                               P+ +T + VL AC   G ++ G   
Sbjct: 709 VPLV-------------------------------PDGITFLVVLYACSHSGMVDHGINF 737

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
            + +     +    +    +++++ + G L +A +L+ +   +   VVW +++    +H
Sbjct: 738 FNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLH 796


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/443 (43%), Positives = 290/443 (65%), Gaps = 2/443 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q  L     ++  YAK G +  A  +F +M+ KD+V WN MI GY+++ L NEAL LF  
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M     +PN +T   +L AC  + ALE G+ IH +I  +    ++  V  AL++MY KCG
Sbjct: 444 MQYNS-KPNSITMACILPACASLAALERGQEIHGHILRN-GFSLDRHVANALVDMYLKCG 501

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +L  ARL+FD + +KD+V W  MI GY MHG+G +A+  FNEM    ++P +++FI +L 
Sbjct: 502 ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILY 561

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+H+GL++EG  FFN M++   IEPK EHY C+V+LL+RAG + +AYK +  M IEPD+
Sbjct: 562 ACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDA 621

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +WG LL  CR++ ++ L EK+AE++      N+G YVLL+NIYA    W+ V ++R  +
Sbjct: 622 TIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERI 681

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
             +G++K PGCS IE+  KVH F+ GD  HP + +I ++L++    +K EG+ P+ +  L
Sbjct: 682 GRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYAL 741

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
               + +K+ +L  HSEK+A+AFG++S  PG ++++ KNLRVC DCH + K +SK   R 
Sbjct: 742 IKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRD 801

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD NRFHHF +G+CSC  +W
Sbjct: 802 IILRDSNRFHHFKDGSCSCRGHW 824



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 159/293 (54%), Gaps = 10/293 (3%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTC----YAKQGEVAA 59
             ++ DL    S+V   +  G +L    L     + S     T+  C    Y+K G + +
Sbjct: 245 LGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNS 304

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  +F+ M E+ VV W  MI GYA+ GL++ ++ LF  M  E + P+  T   +L AC  
Sbjct: 305 AIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACAC 364

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
            G LE+G+ +H+YI+ ++ ++ ++ V  AL++MY+KCGS+ DA  VF  +  KD+V WN+
Sbjct: 365 TGLLENGKDVHNYIKENK-MQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNT 423

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDE 238
           MI GY+ +    +AL LF EM +   KP+ IT   +L ACA    +  G+    + +++ 
Sbjct: 424 MIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNG 482

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++++  V +   +V++  + G +  A +L+ DM  E D V W  ++    +HG
Sbjct: 483 FSLDRHVAN--ALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHG 532



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 152/296 (51%), Gaps = 21/296 (7%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------------- 55
           D  + + LV +Y   GD+    ++F  +    +     ++  YAK G             
Sbjct: 135 DGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMR 194

Query: 56  -----EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
                 V +AR LFD++ ++DV+ WN MI GY  +GL+ + L LF +ML   +  +  T 
Sbjct: 195 ELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATM 254

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V+V++ C   G L  GR +H Y   +   K  + +   L++MYSK G+L  A  VF+ + 
Sbjct: 255 VSVVAGCSNTGMLLLGRALHGYAIKASFGK-ELTLNNCLLDMYSKSGNLNSAIQVFETMG 313

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           ++ VV W SMI GYA  G    +++LF+EM +  + P   T   +L ACA  GL+  G+ 
Sbjct: 314 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKD 373

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             N +K E  ++  +     ++++ ++ G + +A+ +  +M+++ D V W T++G 
Sbjct: 374 VHNYIK-ENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGG 427



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 125/269 (46%), Gaps = 23/269 (8%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N+ I  + + G    A+ L  +  + K +    T  +VL  C  + +++ GR IHS I+
Sbjct: 71  YNIEICRFCELGNLRRAMELINQ--SPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            S +++V+  +G+ L+ MY  CG L++ R +FD+V ++ V +WN ++ GYA  G  +++L
Sbjct: 129 -SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LF  M  + ++                  V   R+ F+ + D   I       G + N 
Sbjct: 188 SLFKRMRELGIRR-----------------VESARKLFDELGDRDVISWNSMISGYVSNG 230

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
           LS  G   + ++ ++ + I  D     +++  C   G + LG  +  Y I  +     T 
Sbjct: 231 LSEKGL--DLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTL 288

Query: 315 -VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              L ++Y+  GN +   +V   M E+ V
Sbjct: 289 NNCLLDMYSKSGNLNSAIQVFETMGERSV 317



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 34/181 (18%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           FSLD+  +V+ +LVD+Y + G +  A  LF  +P++ LVS T M                
Sbjct: 483 FSLDR--HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM---------------- 524

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                          I GY  HG  +EA+  F  M    +EP+EV+ +++L AC   G L
Sbjct: 525 ---------------IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           + G    + + N+  I+   +    ++++ ++ G+L  A + +     + D  +W +++ 
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 629

Query: 183 G 183
           G
Sbjct: 630 G 630


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/476 (42%), Positives = 309/476 (64%), Gaps = 6/476 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS---LTTMLT-CYAKQGEVAAARVLF 64
           D+Y  TS+++  A  G++ S + +   + + +L +   ++  LT  YAK G +  A  +F
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVF 512

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
             M++KDV+ WN MI GY ++ L NEAL LF  M  E  +P+  T   +L AC  + AL+
Sbjct: 513 SHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALD 571

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR IH Y   +     +  V  A+++MY KCG L  AR +FD + +KD+V W  MI GY
Sbjct: 572 KGREIHGYALRN-GYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGY 630

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            MHG+G +A+  FN+M    ++P +++FI +L AC+H+GL++EG + FN MK E  IEP 
Sbjct: 631 GMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPN 690

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +EHY CMV+LL+R G + +A+K +  M I+PD+ +WG LL  CR+H ++ L EK+AE + 
Sbjct: 691 LEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIF 750

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                N+G YVLL+NIYA    W+ V ++R  + ++G++K PGCS IE+  K++ F+AGD
Sbjct: 751 ELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGD 810

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
              P++K+I ++L+ +   +K EGY P+T   L +  E++K+ +L  HSEKLA+AFG+++
Sbjct: 811 CSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLN 870

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             PG +I++ KNLRVC DCH + K +SK   R+I++RD +RFHHF +G+CSC  YW
Sbjct: 871 LPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 134/243 (55%), Gaps = 2/243 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++++ Y    +V  A+ LFD++ ++DV+ WN MI GY ++GL +  + +F +ML   V
Sbjct: 289 VNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGV 348

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           + +  T V V  AC  IG L  G+ +HSY   +  +   V+    L++MYSKCG L  A 
Sbjct: 349 DIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAI 408

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+R+++K VV W SMI GY   G    A++LF+EM    + P       +L+ACA  G
Sbjct: 409 RVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAING 468

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G+   + ++ E  +E        + ++ ++ G +++A+ +   MK + D + W T+
Sbjct: 469 NLKSGKIVHDYIR-ENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTM 526

Query: 284 LGA 286
           +G 
Sbjct: 527 IGG 529



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 44/331 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G++   R++FD + E  +  WN+MI  Y+  G   E++ LF++ML   ++PN  T 
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTF 254

Query: 111 VAVLSACGQIGALESGRWIHSYI----ENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            ++L     +  +E GR +H  I     NS N  VN     +LI+ Y     ++ A+ +F
Sbjct: 255 SSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVN-----SLISFYFVGRKVRCAQKLF 309

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + D+DV+ WNSMI GY  +G     +++F +M    +     T + +  ACA+ G + 
Sbjct: 310 DELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL 369

Query: 227 EGR----------------RFFNTMKDEYAI---------------EPKVEHYGCMVNLL 255
            G+                RF NT+ D Y+                E  V  +  M+   
Sbjct: 370 LGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGY 429

Query: 256 SRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANS 311
            R G  + A KL  +MK   + PD     ++L AC ++GN+  G+ + +Y+   NL  NS
Sbjct: 430 VREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNS 489

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                L+++YA  G+      V + MK+K V
Sbjct: 490 FVSNALTDMYAKCGSMKDAHDVFSHMKKKDV 520



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           ++L  C +  ++  GR + S IE+S  + ++  +G  L+ MY KCG LK+ R+VFD++++
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESS-GVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSE 213

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             + +WN MI  Y+  G   +++ LF +M  + +KP+  TF  +L   A    V EGR+
Sbjct: 214 SKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/437 (45%), Positives = 291/437 (66%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  YAK      AR +FD+M ++ +V WN MI GY Q+GLANEA+ +F +M   +VE
Sbjct: 147 AALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVE 206

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T V+VLSAC Q+G+L+ G W+H  I  S  I +NV + T+L+NM+S+CG +  AR 
Sbjct: 207 PDSATFVSVLSACSQLGSLDFGCWLHDCIVGS-GITMNVVLATSLVNMFSRCGDVGRARA 265

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  + + +VV+W +MI GY MHG+G +A+++F+ M    + P+ +TF+ +LSACAHAGL
Sbjct: 266 VFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGL 325

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTL 283
           ++EGR  F +MK EY + P VEH+ CMV++  R G + EAY+ V  +   E    +W  +
Sbjct: 326 IDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAM 385

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N  LG ++AE LI+    N G YVLLSN+YA  G  D V  VR +M ++G++
Sbjct: 386 LGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLK 445

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+ G S+I++ N+ + F  GD  HP++ EIY  L+E+    K  GY P  +  +H++  +
Sbjct: 446 KQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGE 505

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +++ +L  HSEKLAVAFGL+ T  G +++IVKNLR+C DCH+  K IS    R+I++RD+
Sbjct: 506 EREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDK 565

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF  G+CSC DYW
Sbjct: 566 LRFHHFREGSCSCSDYW 582



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 158/313 (50%), Gaps = 5/313 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L  T   RS   LT +LT     G +A  R LF  + + D   +N +I   ++ G + +A
Sbjct: 33  LVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDA 92

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           ++ +RRML  ++ P+  T  +V+ AC  +  L  G  +HS++  S     +  V  ALI 
Sbjct: 93  VLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVS-GYASDSFVQAALIA 151

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
            Y+K  + + AR VFD +  + +V WNSMI GY  +G   +A+++FN+M   R++P   T
Sbjct: 152 FYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSAT 211

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F+ +LSAC+  G ++ G    + +     I   V     +VN+ SR G V  A  +   M
Sbjct: 212 FVSVLSACSQLGSLDFGCWLHDCIVGS-GITMNVVLATSLVNMFSRCGDVGRARAVFYSM 270

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIGNWD-G 329
            IE + VLW  ++    +HG      ++   + ++  + NS T+V + +  A  G  D G
Sbjct: 271 -IEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEG 329

Query: 330 VARVRTLMKEKGV 342
            +   ++ +E GV
Sbjct: 330 RSVFASMKQEYGV 342



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++V  T+++  +++ G+V  AR +F  M E +VV W  MI GY  HG   EA+ +F RM 
Sbjct: 243 NVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMK 302

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           A  V PN VT VAVLSAC   G ++ GR + + ++    +   V+    +++M+ + G L
Sbjct: 303 ARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLL 362

Query: 160 KDARLVFDRVNDKDVV--VWNSMIVGYAMH 187
            +A      +N  ++V  VW +M+    MH
Sbjct: 363 NEAYQFVKGLNSDELVPAVWTAMLGACKMH 392


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/394 (50%), Positives = 274/394 (69%), Gaps = 1/394 (0%)

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
           L    L LF  M    ++ NEVT VA++SAC ++GAL  G W H Y+    N+K+N  VG
Sbjct: 130 LIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLK-HNLKLNHFVG 188

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           TALI+MYSKCG L  A  +FD++  +D + +N+MI G+A+HG+G  AL LF +M    L 
Sbjct: 189 TALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLA 248

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P D+T +  + +C+H GLV EG   F +MK+ Y +EPK+EHYGC+V+LL RAG++ EA +
Sbjct: 249 PDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEE 308

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326
            V++M ++P++V+W +LLGA R+HGN+ +GE + ++LI      SG YVLLSN+YA+I  
Sbjct: 309 RVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINR 368

Query: 327 WDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386
           WD V RVR LMK+ G+ K PG S +E+   +HEFL GD  HP+SKEIY+ LEE++  L  
Sbjct: 369 WDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHE 428

Query: 387 EGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAV 446
            G+ P+T  VL DI E++K+++L  HSE+LA+AF LI++     I+I+KNLRVC DCH  
Sbjct: 429 YGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTS 488

Query: 447 FKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            KLISK   R+I++RDRNRFHHF  G CSC DYW
Sbjct: 489 SKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K G +  A  LFD +  +D +C+N MI G+A HG  ++AL LF++M  E + 
Sbjct: 189 TALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLA 248

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           P++VT V  + +C  +G +E G  +   ++    ++  ++    L+++  + G L++A  
Sbjct: 249 PDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEE 308

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHG 188
            V +     + V+W S++    +HG
Sbjct: 309 RVLNMPMKPNAVIWRSLLGAARVHG 333


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/474 (47%), Positives = 306/474 (64%), Gaps = 22/474 (4%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR  D  +  +L AT+ +  + +    +TT+L  YAK G+VA+AR +FD+M  +DV  WN
Sbjct: 131 ARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWN 190

Query: 77  VMIDGYAQHGLANEALVLFR------RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            ++ G AQ    N AL+LFR      R L  + EPN VT VA LSAC Q+G L+ G  +H
Sbjct: 191 ALLAGLAQGTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVH 250

Query: 131 SYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVWNSMIVGYAM 186
            +   +R I    NV VG ALI+MYSKCGSL  A  VF   ++ D+ +V +N+ I   ++
Sbjct: 251 EF---ARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSI 307

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G+DAL+LF+EM   R++P +IT++ ++  C HAGLV++GRR F++M+    + P ++
Sbjct: 308 HGHGEDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMK 362

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYG +V+LL RAG++ EAY ++M M    D VLW TLLGA ++HGN+ L E  A  L   
Sbjct: 363 HYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADL 422

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
                G YVLLSN+YA+   W  V RVR  M+   V+K PG S  E+   +H+F+ GD  
Sbjct: 423 GSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKE 482

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           H + +EIY  L+EI   + A GY P+T  VLHDIGE++KQ +L  HSEKLA+AFGLIST 
Sbjct: 483 HMRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTP 542

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PG +I+++KNLR C DCH V KLISK   R I++RDR RFH F +G CSC DYW
Sbjct: 543 PGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 596


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/465 (44%), Positives = 298/465 (64%), Gaps = 2/465 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAA 59
            VK     DLYV  +L+  Y   GDV +  K+F  +P  R +V+   +L  Y + G V  
Sbjct: 156 AVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGYVRAGMVGV 215

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD M  +D V W+ ++ GY + G    AL +F+ M+ + V+ NE   V  LSA  Q
Sbjct: 216 AREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQ 275

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+++H  I+ +  + +++ +G AL++MYSKCGS+  A+ VFD +  +DV  WNS
Sbjct: 276 LGLLEQGKFVHEVIKRA-GVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNS 334

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G DA+QLF +       P++ITF+G+L+AC+  GLV+EGR +F  M ++Y
Sbjct: 335 MICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYFKLMAEKY 394

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IE ++EHYGCMV+LLSRAG V+EA +L+  M I PD VLWGT+L AC+ HG + LG  +
Sbjct: 395 GIESEMEHYGCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGLVDLGITV 454

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  + A+ G YVLL++IYA    WD V +VR LM  +G  K  G S +E    VH+
Sbjct: 455 GNKLIELDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHK 514

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD+ H  S +IY ML  I+  L   GYVP    VLHDIG+++K ++++VHSE+LA+A
Sbjct: 515 FLVGDMDHKDSVQIYNMLCMIDRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIA 574

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           +G I  + G+ I+IVKNL VC DCH   K+++K  GR+I++RD N
Sbjct: 575 YGFIVVEAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIIVRDAN 619


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 305/481 (63%), Gaps = 34/481 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD D+YV++SL+D+YA+   V  + ++F            T+LT           
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVF------------TLLT----------- 301

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                   E+D + WN +I G  Q+GL +E L  FR+ML  K++P   +  +++ AC  +
Sbjct: 302 --------ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHL 353

Query: 121 GALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             L  G+ +H YI  +RN    N+ + ++L++MY+KCG+++ A+ +FDR+  +D+V W +
Sbjct: 354 TTLHLGKQLHGYI--TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTA 411

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI+G A+HG   DA++LF +M    +KP+ + F+ +L+AC+H GLV+E  ++FN+M  ++
Sbjct: 412 MIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDF 471

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I P VEHY  + +LL RAG++EEAY  +  M I P   +W TLL ACR+H NI + EK+
Sbjct: 472 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKV 531

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A  ++  +  N+G Y+LL+NIY+A   W   A+ R  M+  G++K P CS IE+ NKV+ 
Sbjct: 532 ANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYA 591

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGD  HP  ++I   +E +   ++ EGYVP T  V HD+ E+QK+  +  HSE+LA+ 
Sbjct: 592 FMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIV 651

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+I+T  G +I++ KNLRVC DCH   K ISK  GR+I++RD +RFHHF NGTCSCGDY
Sbjct: 652 FGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDY 711

Query: 480 W 480
           W
Sbjct: 712 W 712



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 149/298 (50%), Gaps = 16/298 (5%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR-------GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ 54
           ++  LD DLY   +L+++Y++       G   L A ++F  M +R+    T  +      
Sbjct: 133 IRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL----- 187

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
               + R +F+ M EKD+V WN +I G A++GL  E L + R M    ++P+  T  +VL
Sbjct: 188 -SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
               +   +  G+ IH      + +  ++ V ++LI+MY+KC  + D+  VF  + ++D 
Sbjct: 247 PLIAENVDISRGKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDG 305

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           + WNS+I G   +G   + L+ F +M   ++KP   +F  ++ ACAH   ++ G++    
Sbjct: 306 ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 365

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +      +  +     +V++ ++ G +  A ++   M++  D V W  ++  C LHG 
Sbjct: 366 ITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQ 421



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 69/331 (20%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF+ +     + W  +I  Y  HGL +++L  F  MLA  + P+     +VL +C  +  
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-------------------- 162
           L  G  +H YI     +  ++  G AL+NMYSK   L+++                    
Sbjct: 122 LNLGESLHGYIIRV-GLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 163 ------------RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                       R +F+ + +KD+V WN++I G A +G  ++ L++  EM    LKP   
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 211 TFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLL 255
           T   +L   A    ++ G+                  +++ D YA   +V     +  LL
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 256 S---------------RAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGE 297
           +               + G  +E  +    M   KI+P S  + +++ AC     + LG+
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 298 KIAEYLISQNLANSGTYVL--LSNIYAAIGN 326
           ++  Y I++N  +   ++   L ++YA  GN
Sbjct: 361 QLHGY-ITRNGFDENIFIASSLVDMYAKCGN 390


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/486 (41%), Positives = 303/486 (62%), Gaps = 13/486 (2%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLF------------ATMPQRSLVSLTTMLTCYAKQ 54
           D+D+    S++  Y   G       LF            ATM    L     +L  Y+K 
Sbjct: 213 DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKS 272

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G + +A  +F+ M E+ VV W  MI GYA+ GL++ ++ LF  M  E + PN +T   +L
Sbjct: 273 GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACIL 332

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            AC  + ALE G+ IH +I  +    ++  V  AL++MY KCG+L  ARL+FD + +KD+
Sbjct: 333 PACASLAALERGQEIHGHILRN-GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 391

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W  MI GY MHG+G +A+  FNEM    ++P +++FI +L AC+H+GL++EG  FFN 
Sbjct: 392 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNM 451

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           M++   IEPK EHY C+V+LL+RAG + +AYK +  M IEPD+ +WG LL  CR++ ++ 
Sbjct: 452 MRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVK 511

Query: 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           L EK+AE++      N+G YVLL+NIYA    W+ V ++R  +  +G++K PGCS IE+ 
Sbjct: 512 LAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIK 571

Query: 355 NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSE 414
            KVH F+ GD  HP + +I ++L++    +K EG+ P+ +  L    + +K+ +L  HSE
Sbjct: 572 GKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSE 631

Query: 415 KLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTC 474
           K+A+AFG++S  PG ++++ KNLRVC DCH + K +SK   R I++RD NRFHHF +G+C
Sbjct: 632 KIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSC 691

Query: 475 SCGDYW 480
           SC  +W
Sbjct: 692 SCRGHW 697



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 141/302 (46%), Gaps = 50/302 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------------- 55
           D  + + LV +Y   GD+    ++F  +    +     ++  YAK G             
Sbjct: 135 DGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMR 194

Query: 56  -----EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
                 V +AR LFD++ ++DV+ WN MI GY  +GL+ + L LF +ML   +  +  T 
Sbjct: 195 ELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATM 254

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V+                            V + +   L++MYSK G+L  A  VF+ + 
Sbjct: 255 VS----------------------------VELTLNNCLLDMYSKSGNLNSAIQVFETMG 286

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           ++ VV W SMI GYA  G    +++LF+EM +  L P+ IT   +L ACA    +  G+ 
Sbjct: 287 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQE 346

Query: 231 FF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
              + +++ ++++  V +   +V++  + G +  A +L+ DM  E D V W  ++    +
Sbjct: 347 IHGHILRNGFSLDRHVAN--ALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGM 403

Query: 290 HG 291
           HG
Sbjct: 404 HG 405



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 113/233 (48%), Gaps = 25/233 (10%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N+ I  + + G    A+ L  +  + K +    T  +VL  C  + +++ GR IHS I+
Sbjct: 71  YNIEICRFCELGNLRRAMELINQ--SPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            S +++V+  +G+ L+ MY  CG L++ R +FD+V ++ V +WN ++ GYA  G  +++L
Sbjct: 129 -SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 195 QLFNEMCRIRLKPSD--------------ITFIGLLSACAHAGLVNEGRRFFNTM----- 235
            LF  M  + ++  +              I++  ++S     GL  +G   F  M     
Sbjct: 188 SLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGI 247

Query: 236 KDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             + A    VE     C++++ S++G +  A ++   M  E   V W +++  
Sbjct: 248 NTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAG 299



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 34/181 (18%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           FSLD+  +V+ +LVD+Y + G +  A  LF  +P++ LVS T M                
Sbjct: 356 FSLDR--HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM---------------- 397

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                          I GY  HG  +EA+  F  M    +EP+EV+ +++L AC   G L
Sbjct: 398 ---------------IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 442

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           + G    + + N+  I+   +    ++++ ++ G+L  A + +     + D  +W +++ 
Sbjct: 443 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 502

Query: 183 G 183
           G
Sbjct: 503 G 503


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/440 (45%), Positives = 288/440 (65%), Gaps = 1/440 (0%)

Query: 41   LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
            L   + +L  Y K GE+ +AR +F ++   D V W  MI G  ++G    AL  + +M  
Sbjct: 1173 LFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRL 1232

Query: 101  EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             KV+P+E T   ++ AC  + ALE GR IH+ I    N   +  V T+L++MY+KCG+++
Sbjct: 1233 SKVQPDEYTFATLVKACSLLTALEQGRQIHANIVK-LNCAFDPFVMTSLVDMYAKCGNIE 1291

Query: 161  DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            DAR +F R N + +  WN+MIVG A HG  K+ALQ F  M    + P  +TFIG+LSAC+
Sbjct: 1292 DARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACS 1351

Query: 221  HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            H+GLV+E    F +M+  Y IEP++EHY C+V+ LSRAG++EEA K++  M  E  + ++
Sbjct: 1352 HSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMY 1411

Query: 281  GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             TLL ACR+  +   G+++AE L++   ++S  YVLLSN+YAA   W+ VA  R +M++ 
Sbjct: 1412 RTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKV 1471

Query: 341  GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
             V+K+PG S ++L NKVH F+AGD  H ++  IY  +E I   ++ EGYVP T   L D+
Sbjct: 1472 NVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDV 1531

Query: 401  GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
             E+ K+ SL  HSEKLA+A+GL+ T P T+++++KNLRVC DCH+  K ISK   R+I++
Sbjct: 1532 EEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVL 1591

Query: 461  RDRNRFHHFVNGTCSCGDYW 480
            RD NRFHHF NG CSCGDYW
Sbjct: 1592 RDANRFHHFRNGICSCGDYW 1611



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 150/308 (48%), Gaps = 23/308 (7%)

Query: 5    SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
            SL+   Y++T +     + G VL            S VS T ++  Y+K+G++  A  LF
Sbjct: 1048 SLEGGYYLATQIHACAMKAGVVLD-----------SFVS-TALIDVYSKRGKMEEAEFLF 1095

Query: 65   DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
             + +  D+  WN ++ GY   G   +AL L+  M       +++T V    A G +  L+
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLK 1155

Query: 125  SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
             G+ IH+ +   R   +++ V + +++MY KCG ++ AR VF  +   D V W +MI G 
Sbjct: 1156 QGKQIHAVVVK-RGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC 1214

Query: 185  AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEP 243
              +G  + AL  +++M   +++P + TF  L+ AC+    + +GR+   N +K   A +P
Sbjct: 1215 VENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP 1274

Query: 244  KVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
             V     +V++ ++ G +E+A   +K     +I      W  ++     HGN     +  
Sbjct: 1275 FV--MTSLVDMYAKCGNIEDARGLFKRTNTRRIAS----WNAMIVGLAQHGNAKEALQFF 1328

Query: 301  EYLISQNL 308
            +Y+ S+ +
Sbjct: 1329 KYMKSRGV 1336



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 163/381 (42%), Gaps = 65/381 (17%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYA--------- 52
            VK  L  D++V+ +LV++YA+ G +  A  LF  M  R +V    M+  Y          
Sbjct: 787  VKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAM 846

Query: 53   ----------------------------------KQGEVAAARVLFDDMEEKDVVCWNVM 78
                                              KQ +  A ++   D +  DV+ WN  
Sbjct: 847  LLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKA 906

Query: 79   IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
            +  + Q G A EA+  F  M+  +V  + +T V +L+    +  LE G+ IH  +  S  
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGL 966

Query: 139  IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
             +V V VG  LINMY K GS+  AR VF ++N+ D++ WN+MI G  + G  + ++ +F 
Sbjct: 967  DQV-VSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 199  EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT------MKDEYAIEPKVEHYGCMV 252
             + R  L P   T   +L AC+      EG  +  T      MK    ++  V     ++
Sbjct: 1026 HLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVS--TALI 1079

Query: 253  NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE---KIAEYLISQNLA 309
            ++ S+ G++EEA  L ++     D   W  +     +HG I  G+    +  Y++ Q   
Sbjct: 1080 DVYSKRGKMEEAEFLFVNQD-GFDLASWNAI-----MHGYIVSGDFPKALRLYILMQESG 1133

Query: 310  NSGTYVLLSNIYAAIGNWDGV 330
                 + L N   A G   G+
Sbjct: 1134 ERSDQITLVNAAKAAGGLVGL 1154



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 164/387 (42%), Gaps = 66/387 (17%)

Query: 47   MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
            ++  Y K G V+ AR +F  M E D++ WN MI G    GL   ++ +F  +L + + P+
Sbjct: 976  LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPD 1035

Query: 107  EVTAVAVLSACGQIGALESGRWIHSYIEN---SRNIKVNVQVGTALINMYSKCGSLKDAR 163
            + T  +VL AC    +LE G ++ + I        + ++  V TALI++YSK G +++A 
Sbjct: 1036 QFTVASVLRAC---SSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAE 1092

Query: 164  LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA--- 220
             +F   +  D+  WN+++ GY + G    AL+L+  M     +   IT +    A     
Sbjct: 1093 FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLV 1152

Query: 221  --------HAGLVNEG------------------------RRFFNTMKDEYAIEPKVEHY 248
                    HA +V  G                        RR F+ +     +       
Sbjct: 1153 GLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMIS 1212

Query: 249  GCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
            GC+ N     GQ E A   Y  +   K++PD   + TL+ AC L   +  G +I   ++ 
Sbjct: 1213 GCVEN-----GQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVK 1267

Query: 306  QNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
             N A +      L ++YA  GN   +   R L K    ++    +++         + G 
Sbjct: 1268 LNCAFDPFVMTSLVDMYAKCGN---IEDARGLFKRTNTRRIASWNAM---------IVGL 1315

Query: 365  LRHPKSKEIYMMLEEINGWLKAEGYVP 391
             +H  +KE     +    ++K+ G +P
Sbjct: 1316 AQHGNAKEALQFFK----YMKSRGVMP 1338



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 14/183 (7%)

Query: 37  PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHG-LANEALV 93
           P R + +   ++T YAK G +++AR LFD   +  +D+V WN ++   A H   +++   
Sbjct: 689 PDRFVTN--NLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFH 746

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTAL 149
           LFR +    V     T   V   C    +  +   +H Y      +K+ +Q    V  AL
Sbjct: 747 LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYA-----VKIGLQWDVFVAGAL 801

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +N+Y+K G +++AR++FD +  +DVV+WN M+  Y       +A+ LF+E  R   +P D
Sbjct: 802 VNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDD 861

Query: 210 ITF 212
           +T 
Sbjct: 862 VTL 864



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            VK +   D +V TSLVD+YA+ G++  A  LF     R + S   M+             
Sbjct: 1266 VKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIV------------ 1313

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                               G AQHG A EAL  F+ M +  V P+ VT + VLSAC   G
Sbjct: 1314 -------------------GLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSG 1354

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             +         ++ +  I+  ++  + L++  S+ G +++A  V
Sbjct: 1355 LVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKV 1398


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/439 (47%), Positives = 290/439 (66%), Gaps = 5/439 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT++ CYAK G V  A  +F  M E++VV W+ MI  YA++    +A+ LF+ M+A   +
Sbjct: 218 TTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDAD 277

Query: 105 --PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             PN +T V+VL+AC  + AL  G+ +H+YI   R     V V  AL+ MY +CG L+  
Sbjct: 278 LVPNSITIVSVLNACAGVNALSHGKLLHAYILR-RGFDSLVSVLNALMAMYMRCGCLEVG 336

Query: 163 RLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           R +F  + + +DVV WNS+I GY MHGFG +A+Q+F EM  +   PS ITFI +L AC+H
Sbjct: 337 RHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSH 396

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLVNEG+  F +M  EY + P+ EHY CMV+LL RAGQ++EA +L+  M IEP   +WG
Sbjct: 397 AGLVNEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWG 455

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
            LLGACR+HG++   E    +L      N+G YVLL++IYA     + V  ++ L++E  
Sbjct: 456 ALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHA 515

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           ++K  GCS IE+  K+H F + D ++P  +++  ++ E    +K +GYVP T IVL+DI 
Sbjct: 516 LEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIE 575

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            ++K+  L  HSEKLAVAFGLI+T  G  I+I KNLR+C DCH+V K ISKFT R+I++R
Sbjct: 576 GEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVR 635

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSCGDYW
Sbjct: 636 DVNRFHHFRDGVCSCGDYW 654



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 29/280 (10%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           L A+ +F + P  S    T ++  YA  G + AAR +FD+   K++  WN ++   A   
Sbjct: 98  LEADPVFRSDPFLS----TRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALAD 153

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG-----RWIHSYIENSRNIKV 141
             +EAL     M    V  +  +    L AC  + A  +      R +H++    R   +
Sbjct: 154 HGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIR-RGYAL 212

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM- 200
           +  V T LI+ Y+K G ++ A  VF  + +++VV W++MI  YA +    DA++LF +M 
Sbjct: 213 HTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMM 272

Query: 201 -CRIRLKPSDITFIGLLSACAHAGLVNEG--------RRFFNTMKDEYAIEPKVEHYGCM 251
                L P+ IT + +L+ACA    ++ G        RR F+++         V     +
Sbjct: 273 ASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSL---------VSVLNAL 323

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + +  R G +E    +   +    D V W +L+    +HG
Sbjct: 324 MAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHG 363



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 9/163 (5%)

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H  +E     + +  + T LI  Y+  G+L  AR VFD    K++ VWN+++   A+  
Sbjct: 94  VHRRLEADPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALAD 153

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSAC-----AHAGLVNEGRRFF-NTMKDEYAIE 242
            G +AL    +M R+ +     ++   L AC     +HA      R    + ++  YA+ 
Sbjct: 154 HGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALH 213

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             V     +++  ++ G V  A  +   M  E + V W  ++G
Sbjct: 214 THVA--TTLIDCYAKLGIVRYAESVFAAMP-ERNVVSWSAMIG 253


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/474 (47%), Positives = 306/474 (64%), Gaps = 22/474 (4%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR  D  +  +L AT+ +  + +    +TT+L  YAK G+VA+AR +FD+M  +DV  WN
Sbjct: 165 ARCSDAFATLQLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWN 224

Query: 77  VMIDGYAQHGLANEALVLFR------RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            ++ G AQ    N AL+LFR      R L  + EPN VT VA LSAC Q+G L+ G  +H
Sbjct: 225 ALLAGLAQGTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVH 284

Query: 131 SYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVWNSMIVGYAM 186
            +   +R I    NV VG ALI+MYSKCGSL  A  VF   ++ D+ +V +N+ I   ++
Sbjct: 285 EF---ARTIGAVDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSI 341

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G+DAL+LF+EM   R++P +IT++ ++  C HAGLV++GRR F++M+    + P ++
Sbjct: 342 HGHGEDALKLFDEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMK 396

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HYG +V+LL RAG++ EAY ++M M    D VLW TLLGA ++HGN+ L E  A  L   
Sbjct: 397 HYGTIVDLLGRAGRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADL 456

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
                G YVLLSN+YA+   W  V RVR  M+   V+K PG S  E+   +H+F+ GD  
Sbjct: 457 GSNVDGDYVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKE 516

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           H + +EIY  L+EI   + A GY P+T  VLHDIGE++KQ +L  HSEKLA+AFGLIST 
Sbjct: 517 HMRWREIYRALDEIGSRICALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTP 576

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PG +I+++KNLR C DCH V KLISK   R I++RDR RFH F +G CSC DYW
Sbjct: 577 PGETIRVIKNLRTCGDCHVVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 630


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/477 (42%), Positives = 304/477 (63%), Gaps = 3/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            D+  +V  SL+  Y   GDV +A K+F  M ++ ++S T+++  Y + G++ +A  +F 
Sbjct: 173 FDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFG 232

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
               KD+V W  M+ GYAQ+ +  +AL +F RM    +  +EV+    +SAC Q+GAL  
Sbjct: 233 RCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRR 292

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
             W+    E +     NV VG+ L++MY+KCG + +A  VF  + +K+V  ++SMI G A
Sbjct: 293 AAWVQEIAERT-GFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351

Query: 186 MHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            HG   +A+ LF EM  R  ++P+ +TFIG+L+AC+HAG+V EGR +F  MKD+Y I P 
Sbjct: 352 SHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPS 411

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV+LL RAG V+EA  LV  M + P   +WG LLGACR+HG   + + +AE+L 
Sbjct: 412 ADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLF 471

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK-VHEFLAG 363
                + G YVLLSNI A+ G W+ V++VR LM+++ ++K+P  S  E  +  VH+F AG
Sbjct: 472 KLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAG 531

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP++ EI   L E+   LK EGYVP    +++D+ +++K+  L  HSEKLA++FGL+
Sbjct: 532 DNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLL 591

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +   G +I+I+KNLR+C DCH   +L+S+    +I++RD  RFHHF NG CSCG +W
Sbjct: 592 TLGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 305/521 (58%), Gaps = 43/521 (8%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ------- 54
            K  L   L+V   LV +Y + G +  A  +   M +R +VS  +++  YA+        
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 55  ---------------GEVAA---------------ARVLFDDMEEKDVVCWNVMIDGYAQ 84
                          G +A+                + +F  M +K +V WNVMI  Y +
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + +  EA+ L+ RM A+  EP+ V+  +VL ACG   AL  G+ IH YIE  + I  N+ 
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP-NLL 345

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  ALI+MY+KCG L+ AR VF+ +  +DVV W +MI  Y   G G DA+ LF+++    
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           L P  I F+  L+AC+HAGL+ EGR  F  M D Y I P++EH  CMV+LL RAG+V+EA
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y+ + DM +EP+  +WG LLGACR+H +  +G   A+ L       SG YVLLSNIYA  
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W+ V  +R +MK KG++K PG S++E++  +H FL GD  HP+S EIY  L+ +   +
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKM 585

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ-----PGTSIKIVKNLRV 439
           K  GYVP ++  LHD+ E+ K+  L VHSEKLA+ F L++T+        +I+I KNLR+
Sbjct: 586 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRI 645

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   KLIS+ T R+I++RD NRFH F  G CSCGDYW
Sbjct: 646 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA   +VA+AR +FD++ E++V+  NVMI  Y  +G   E + +F  M    V P+
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC   G +  GR IH        +   + VG  L++MY KCG L +ARLV 
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D ++ +DVV WNS++VGYA +    DAL++  EM  +++     T   LL A ++    N
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 258

Query: 227 ---EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
                  FF   K           +  M+ +  +     EA +L   M+    EPD+V  
Sbjct: 259 VMYVKDMFFKMGKKSLV------SWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTL 336
            ++L AC     ++LG+KI  Y+  + L  +   +LL N    +YA  G  +    V   
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKLIPN---LLLENALIDMYAKCGCLEKARDVFEN 369

Query: 337 MKEKGV 342
           MK + V
Sbjct: 370 MKSRDV 375



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +HS I    +++ N  +G  L+  Y+    +  AR VFD + +++V++ N MI  Y  
Sbjct: 59  RTVHSRI-ILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN 117

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +GF  + +++F  MC   ++P   TF  +L AC+ +G +  GR+   +   +  +   + 
Sbjct: 118 NGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLSSTLF 176

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
               +V++  + G + EA +LV+D     D V W +L+
Sbjct: 177 VGNGLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLV 213


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/460 (43%), Positives = 302/460 (65%), Gaps = 4/460 (0%)

Query: 23  GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82
           GG+ + A ++ +   Q   + LT ++  Y+   + + A  +FD+M ++D + WNV+I  Y
Sbjct: 42  GGEQVHA-RILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCY 100

Query: 83  AQHGLANEALVLFRRMLAEKV--EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
            ++    + LV+F  ML+ ++  EP++VT + +L AC  +GALE G  +H +I   R   
Sbjct: 101 MRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIV-ERGYD 159

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
               +  +LI MYS+ G+L  A  VF  +++K+VV W+++I G AM+G+G++A+  F EM
Sbjct: 160 NATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEM 219

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
            ++ + P D+TF G+LSAC++ GLV++G   F  M  E+ I P + HYGCMV+LL RAGQ
Sbjct: 220 LKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQ 279

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           + +AY+L+M M+++PDS +W TLLGACR+H N+ LGE + E+LI      +G YVLL N+
Sbjct: 280 LHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNL 339

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           Y+++ NW  V  +R  MKEKG+Q  P  SSIEL  KVHEF+  D+ HP+  EIY ML+EI
Sbjct: 340 YSSVDNWKKVTELRKFMKEKGIQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEI 399

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
           +  LK  GYV +    L ++  ++K+  L  HSEKLA+AFG+++T PGT+I+I KNLR+C
Sbjct: 400 SKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRIC 459

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K++S    R++++ D  RFHHF  G CSC DYW
Sbjct: 460 VDCHNFAKILSGVYNRQVIITDHTRFHHFRGGHCSCNDYW 499


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/439 (45%), Positives = 279/439 (63%), Gaps = 9/439 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L  Y K G +  AR +FD MEE+DVV W  MI  Y ++G   E   LFR ++   + P
Sbjct: 291 SLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMP 350

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCGSLKD 161
           N+ T   VL+AC  + A + G+ IH+Y+     ++V         +AL++MYSKCG +++
Sbjct: 351 NDFTFAGVLNACADLAAEDLGKQIHAYM-----VRVGFDSFSSAASALVHMYSKCGDIEN 405

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A+ VF+ +   D+  W S++VGYA HG    AL  F  + +   KP  I FIG+LSACAH
Sbjct: 406 AKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAH 465

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV++G  +F+++K+++ +   ++HY C+++LL+RAGQ  EA  ++ +M I+PD  +W 
Sbjct: 466 AGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWA 525

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
            LLG CR+HGN+ L ++ A+ L      N  TYV L+NIYA+ G     A +R  M  +G
Sbjct: 526 ALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRG 585

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           + K+PG S IE+  +VH F  GD  HPKSKEI   L E++  +K  GYVP T  VLHD+ 
Sbjct: 586 IVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVE 645

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            +QK+ +L  HSEKLAVAFG+IST  GT IK+ KNLR C DCH   K IS  TGRKI++R
Sbjct: 646 LEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVR 705

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFH F  G+CSC DYW
Sbjct: 706 DSNRFHCFEGGSCSCKDYW 724



 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 152/291 (52%), Gaps = 4/291 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K S    LY+S  L+D+YA+ G ++ AEK+F  M  R L S   M++ Y K G    AR
Sbjct: 145 IKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKAR 204

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNEVTAVAVLSACGQI 120
            LFD M  +D   W  +I G  QH    EAL L+R M      + N+ T  + L+A   I
Sbjct: 205 NLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAI 264

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            +L  G+ IH +I     +  +  V  +L++MY KCGS+++AR +FD++ ++DVV W +M
Sbjct: 265 PSLHMGKKIHGHIMR-MGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTM 323

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I  Y  +G  ++   LF  +    + P+D TF G+L+ACA     + G++    M     
Sbjct: 324 IHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMV-RVG 382

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +        +V++ S+ G +E A K V ++  +PD   W +LL     HG
Sbjct: 383 FDSFSSAASALVHMYSKCGDIENA-KSVFEILPQPDLFSWTSLLVGYAQHG 432



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 117/260 (45%), Gaps = 22/260 (8%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK-----DVVCWNVMIDGYAQHGLANEALV 93
           +SL+ LT  LT    Q  +    +LFD  +       D   +   ID         EA+ 
Sbjct: 51  KSLIILTRDLTT-PSQTHIGKKIILFDGKDAYINRLCDSKLFKEAIDILCGQSRLREAVQ 109

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           L  R+  EK  P     + +L  C +  AL+ G+ +H++I+ S +I   + +   L++MY
Sbjct: 110 LLYRI--EK--PYASIYLTLLKFCLKQRALKEGKQVHAHIKTSGSI--GLYISNRLLDMY 163

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +KCGSL DA  VFD +  +D+  WN MI GY   G  + A  LF++M        + ++ 
Sbjct: 164 AKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP----NRDNFSWT 219

Query: 214 GLLSACAHAGLVNEGRRFFNTM-KDEYAIEPK--VEHYGCMVNLLSRAGQVEEAYKLVMD 270
            ++S C       E    +  M K +Y+   K  +         +      ++ +  +M 
Sbjct: 220 AIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMR 279

Query: 271 MKIEPDSVLWGTLL---GAC 287
           M ++ D V+W +LL   G C
Sbjct: 280 MGLDSDEVVWCSLLDMYGKC 299



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 98/196 (50%), Gaps = 10/196 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K G++  A+ +F+ + + D+  W  ++ GYAQHG  ++AL  F  +L    +
Sbjct: 391 SALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTK 450

Query: 105 PNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P+ +  + VLSAC   G ++ G  + HS I+    +   +     +I++ ++ G   +A 
Sbjct: 451 PDGIAFIGVLSACAHAGLVDKGLEYFHS-IKEKHGLTRTIDHYACIIDLLARAGQFTEAE 509

Query: 164 LVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSD-ITFIGLLSAC 219
            + + +  K D  +W +++ G  +HG     L+L     +    ++P +  T++ L +  
Sbjct: 510 SIINEMPIKPDKYIWAALLGGCRIHG----NLELAKRAAKSLFEIEPENPATYVTLANIY 565

Query: 220 AHAGLVNEGRRFFNTM 235
           A AG+  E      TM
Sbjct: 566 ASAGMRAEEANIRETM 581


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/430 (45%), Positives = 272/430 (63%), Gaps = 1/430 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G +  AR +FD M ++D+V W  MID Y Q G   E   LF  +L   + PNE T 
Sbjct: 248 YGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTF 307

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL+AC    + E G+ +H Y+        +    +AL++MYSKCG++  A  VF    
Sbjct: 308 SGVLNACANQTSEELGKKVHGYMTRVGFDPFSF-AASALVHMYSKCGNMVSAERVFKETP 366

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             D+  W S+I GYA +G   +A++ F  + +   +P  ITF+G+LSACAHAGLV++G  
Sbjct: 367 QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLD 426

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
           +F+++K++Y +    +HY C+++LL+R+GQ +EA  ++  M ++PD  LW +LLG CR+H
Sbjct: 427 YFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIH 486

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
           GN+ L ++ AE L      N  TYV L+NIYA  G W  VA++R  M ++GV K+PG S 
Sbjct: 487 GNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSW 546

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLE 410
           I +   VH FL GD  HPKSKEI   L +++  +K EG+VP T  VLHD+ ++QK+ +L 
Sbjct: 547 IAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLS 606

Query: 411 VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470
            HSEKLAVAFG+IST  GT IK+ KNLR C DCH   K ISK T RKI++RD NRFH F 
Sbjct: 607 YHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFE 666

Query: 471 NGTCSCGDYW 480
           +G CSC DYW
Sbjct: 667 DGHCSCRDYW 676



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 161/296 (54%), Gaps = 4/296 (1%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L++   L+++YA+   ++ ++KLF  MP+R L S   +++ YAK G +  A+ LFD M E
Sbjct: 105 LFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPE 164

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +D   W  MI GY +H   NEAL LFR M  ++  + N+ T  + L+A   +  L  G+ 
Sbjct: 165 RDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKE 224

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH YI  +  +  +  V +AL +MY KCGS+++AR +FD++ D+D+V W +MI  Y   G
Sbjct: 225 IHGYIMRT-GLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDG 283

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             K+   LF ++ R  ++P++ TF G+L+ACA+      G++    M      +P     
Sbjct: 284 RRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT-RVGFDPFSFAA 342

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
             +V++ S+ G +  A ++  +   +PD   W +L+     +G      +  E L+
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELLV 397



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 99/195 (50%), Gaps = 4/195 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K G + +A  +F +  + D+  W  +I GYAQ+G  +EA+  F  ++    +
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ 402

Query: 105 PNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P+ +T V VLSAC   G ++ G  + HS I+    +         +I++ ++ G   +A 
Sbjct: 403 PDHITFVGVLSACAHAGLVDKGLDYFHS-IKEQYGLTHTADHYACIIDLLARSGQFDEAE 461

Query: 164 LVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            +  +++ K D  +W S++ G  +HG  K A +    +  I  + +  T++ L +  A A
Sbjct: 462 NIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPE-NPATYVTLANIYATA 520

Query: 223 GLVNEGRRFFNTMKD 237
           G+ +E  +   TM D
Sbjct: 521 GMWSEVAKIRKTMDD 535


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/484 (44%), Positives = 310/484 (64%), Gaps = 38/484 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  LD D+YV  SL+ LYA                           +C    G ++ A  
Sbjct: 154 KLGLDLDVYVGNSLIHLYA---------------------------SC----GCLSMALK 182

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ M  + +V WNVMID Y Q GL   AL LF  M     EP+  T  +++SAC  IGA
Sbjct: 183 VFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGA 241

Query: 123 LESGRWIHSYI--ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           L  G W H+Y+  + S  +  +V + ++L++MYSKCGSL+ A+ VF+ +   D+  WNSM
Sbjct: 242 LSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSM 301

Query: 181 IVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I+  AMHG G+ ALQ F+ +  + +  P+ +TF+G+LSAC H G+V +GR++F+ M ++Y
Sbjct: 302 ILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDY 361

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC-RLHGNIALGEK 298
            IEP++EHYGC+V+LLSR+G ++EA +LV +M I+PD+V+W +LL AC + +  + L E+
Sbjct: 362 KIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEE 421

Query: 299 IA-EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           +A + L S+   +SG YV+LS +YA+   W+ V  +R +M + GV KEPGCSSIE+    
Sbjct: 422 VAFKILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGIS 481

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVLHDIGEKQKQNSLEVHSEKL 416
           HEF AGD  HP+ KEIY +++ I   L+  GY P  +Q  + D  +  KQ SL++HSE+L
Sbjct: 482 HEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERL 541

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+AFGL++ +PGT ++I KNLRVC DCH V KLIS+    +I+MRDRNRFHHF +G CSC
Sbjct: 542 AIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSC 601

Query: 477 GDYW 480
            D+W
Sbjct: 602 MDFW 605



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 10/263 (3%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQH-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSA 116
           A RV F+ ++  +   WN +I   A+      +A+ +F RML E  VEP++ T   +L A
Sbjct: 77  ACRV-FNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKA 135

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           C  + AL  GR  H+ I     + ++V VG +LI++Y+ CG L  A  VF+++  + +V 
Sbjct: 136 CAYVFALSEGRQAHAQIFK-LGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVS 194

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG--RRFFNT 234
           WN MI  Y   G  ++AL+LF EM +   +P   T   ++SACA  G ++ G     +  
Sbjct: 195 WNVMIDAYVQSGLFENALKLFVEM-QNSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVL 253

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
            K   A+   V     +V++ S+ G +  A ++   M  + D   W +++ A  +HG   
Sbjct: 254 RKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMP-KHDLNSWNSMILALAMHGRGQ 312

Query: 295 LGEKIAEYLISQN--LANSGTYV 315
              +    L+     L NS T+V
Sbjct: 313 AALQCFSRLVEMEKFLPNSVTFV 335


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 294/436 (67%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK GE+  A V+  +M+E+ +  WNV+I+GYA HG + EAL  ++++  E + 
Sbjct: 502 TSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIP 561

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            ++VT ++VL+AC    +L  G+ IHS       +  +V V  AL NMYSKCGS+++AR 
Sbjct: 562 VDKVTFISVLNACTSSTSLAEGKMIHSNAVEC-GLDSDVIVKNALTNMYSKCGSMENARR 620

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  +  V WN M+  YA HG  ++ L+L  +M +  +K + ITF+ +LS+C+HAGL
Sbjct: 621 IFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGL 680

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG ++F+++  +  IE K EHYGC+V+LL RAG+++EA K +  M +EP  V W +LL
Sbjct: 681 IAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+  ++  G+  A  L+  +  NS   V+LSNIY+  G+W   A++R  M  + V+K
Sbjct: 741 GACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKK 800

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG SSI++ NKVHEF   D  HP++ EIY  +EE+   ++  GYVP T++VLHD+ E+Q
Sbjct: 801 VPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQ 860

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K++ L  HSEKLA+AFGLIST   +S+ I KNLRVC DCH   K ISK TGR+I++RD +
Sbjct: 861 KESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNH 920

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+CSC DYW
Sbjct: 921 RFHHFRDGSCSCKDYW 936



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 170/325 (52%), Gaps = 10/325 (3%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           R G ++ A  L     Q +LV+ T +L  Y K G +  A+ +F++M EK+VV WN M+  
Sbjct: 75  RDGILVHALSLERGFFQNTLVA-TALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGV 133

Query: 82  YAQHGLA-NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           Y+  G     A+ LF RML E V+ N +T + VL++     AL  G++IHS +  S +  
Sbjct: 134 YSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEH-S 192

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
           ++V V TAL+N Y+KCGSL DAR VFD +  + V  WNSMI  Y++     +A  +F  M
Sbjct: 193 LDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM 252

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
            +   +   +TF+ +L AC +   +  G+    ++  E + E  +     ++ + +R   
Sbjct: 253 QQEGERCDRVTFLSILDACVNPETLQHGKHVRESI-SETSFELDLFVGTALITMYARCRS 311

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANSGTYVLL 317
            E+A ++   MK + + + W  ++ A   HG+   GE +  + + Q    L N  T++ L
Sbjct: 312 PEDAAQVFGRMK-QTNLITWSAIITAFADHGHC--GEALRYFRMMQQEGILPNRVTFISL 368

Query: 318 SNIYAAIGNWDGVARVRTLMKEKGV 342
            N +      + ++R+  L+ E G+
Sbjct: 369 LNGFTTPSGLEELSRIHLLITEHGL 393



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 142/265 (53%), Gaps = 13/265 (4%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y++ G +  A   F  +  ++VV WNVMI  Y+ +    EAL LF  ML E V PN +T 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           VAVL++CG    L  G  +H+ +   R    N  V TAL+NMY KCG+L DA+ VF+ + 
Sbjct: 62  VAVLNSCGSFRELRDGILVHA-LSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 171 DKDVVVWNSMIVGYAMHGFG-KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           +K+VV WN+M+  Y++ G   K A++LF  M    +K + ITF+ +L++      + +G+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 230 RFFNTMKD-EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
              + +++ E++++  V     +VN  ++ G + +A K+   M        W +++ A  
Sbjct: 181 FIHSCVRESEHSLDVFVN--TALVNTYTKCGSLTDARKVFDGMPCRSVGT-WNSMISA-- 235

Query: 289 LHGNIALGEKIAE-YLISQNLANSG 312
                ++ E+  E + I Q +   G
Sbjct: 236 ----YSISERSGEAFFIFQRMQQEG 256



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 127/233 (54%), Gaps = 5/233 (2%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD +E  +++ WN MI  Y Q    ++AL LFR M  + ++P+ V  + +L AC  
Sbjct: 416 ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTI 475

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
                + + +H  +E S  +  +  V T+L+NMY+K G L  A ++   ++++ +  WN 
Sbjct: 476 GSHGRTRKLVHQCVEES-GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNV 534

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +I GYA+HG  ++AL+ + ++ ++   P D +TFI +L+AC  +  + EG +  ++   E
Sbjct: 535 LINGYALHGRSREALEAYQKL-QLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVE 592

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             ++  V     + N+ S+ G +E A ++   M I   +V W  +L A   HG
Sbjct: 593 CGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHG 644



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 38/289 (13%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           S + DL+V T+L+ +YAR      A ++F  M Q +L++ + ++T +             
Sbjct: 291 SFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAF------------- 337

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
                             A HG   EAL  FR M  E + PN VT +++L+       LE
Sbjct: 338 ------------------ADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLE 379

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
               IH  I     +     +  AL+N+Y +C S  DAR VFD++   +++ WNSMI  Y
Sbjct: 380 ELSRIHLLI-TEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIY 438

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI--E 242
                  DALQLF  M +  ++P  + F+ +L AC   G     R+  +   +E  +   
Sbjct: 439 VQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGS 497

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           P V+    +VN+ ++AG+++ A  ++ +M  E     W  L+    LHG
Sbjct: 498 PLVQ--TSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHG 543



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 34/182 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  LD D+ V  +L ++Y++ G + +A ++F +MP RS VS   ML  YA         
Sbjct: 591 VECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYA--------- 641

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                 QHG + E L L R+M  E V+ N +T V+VLS+C   G
Sbjct: 642 ----------------------QHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAG 679

Query: 122 ALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
            +  G ++ HS + + R I+V  +    L+++  + G L++A     ++  +  +V W S
Sbjct: 680 LIAEGCQYFHS-LGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWAS 738

Query: 180 MI 181
           ++
Sbjct: 739 LL 740



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MYS+CGSL DA   F ++  ++VV WN MI  Y+ +   ++AL LF+ M    + P+ IT
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
            + +L++C     + +G    + +  E            ++N+  + G + +A  +  +M
Sbjct: 61  LVAVLNSCGSFRELRDG-ILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 272 KIEPDSVLWGTLLGACRLHG 291
             E + V W  +LG   L G
Sbjct: 120 A-EKNVVTWNAMLGVYSLQG 138


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 291/437 (66%), Gaps = 4/437 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVE 104
            ++  YAK G +  AR +F+ +  +DV+ WN +I GYAQ+GLA+EA+  +  M     + 
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIV 449

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PN+ T V++L A   +GAL+ G  IH   I+N   + ++V V T LI+MY KCG L+DA 
Sbjct: 450 PNQGTWVSILPAYSHVGALQQGMKIHGRLIKNC--LFLDVFVATCLIDMYGKCGRLEDAM 507

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F  +  +  V WN++I    +HG G+ ALQLF +M    +K   ITF+ LLSAC+H+G
Sbjct: 508 SLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSG 567

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+E +  F+TM+ EY I+P ++HYGCMV+L  RAG +E+AY LV +M I+ D+ +WGTL
Sbjct: 568 LVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTL 627

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACR+HGN  LG   ++ L+  +  N G YVLLSNIYA +G W+G  +VR+L +++G++
Sbjct: 628 LAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLR 687

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG SS+ + + V  F AG+  HP+  EIY  L  +N  +K+ GYVP    VL D+ E 
Sbjct: 688 KTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEED 747

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  L  HSE+LA+ FG+IST P + I+I KNLRVC DCH   K ISK T R+I++RD 
Sbjct: 748 EKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDS 807

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G CSCGDYW
Sbjct: 808 NRFHHFKDGICSCGDYW 824



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 163/296 (55%), Gaps = 12/296 (4%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLF 64
           D    +S++ + A+  DV+    +   + +  L S       ++  Y+K G +  A+ +F
Sbjct: 247 DTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVF 306

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D ME +D+V WN +I  Y Q+     AL  F+ ML   + P+ +T V++ S  GQ+    
Sbjct: 307 DGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRR 366

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR +H ++   R ++V++ +G AL+NMY+K GS+  AR VF+++  +DV+ WN++I GY
Sbjct: 367 IGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGY 426

Query: 185 AMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIE 242
           A +G   +A+  +N M   R + P+  T++ +L A +H G + +G +    + K+   ++
Sbjct: 427 AQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLD 486

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
             V    C++++  + G++E+A  L  ++  E  SV W  ++ +  +HG+   GEK
Sbjct: 487 VFVA--TCLIDMYGKCGRLEDAMSLFYEIPQET-SVPWNAIISSLGIHGH---GEK 536



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 150/329 (45%), Gaps = 39/329 (11%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K   + D+YV+ SL+ LY+R G V  A K+                            
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKV---------------------------- 204

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              F DM  +DV  WN MI G+ Q+G   EAL +  RM  E+V+ + VT  ++L  C Q 
Sbjct: 205 ---FVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQS 261

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             +  G  +H Y+     ++ +V V  ALINMYSK G L+DA+ VFD +  +D+V WNS+
Sbjct: 262 NDVVGGVLVHLYVIK-HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSI 320

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I  Y  +     AL  F EM  + ++P  +T + L S          GR     +     
Sbjct: 321 IAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRW 380

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +E  +     +VN+ ++ G ++ A + V +     D + W TL+     +G     E I 
Sbjct: 381 LEVDIVIGNALVNMYAKLGSIDCA-RAVFEQLPSRDVISWNTLITGYAQNG--LASEAID 437

Query: 301 EYLISQN----LANSGTYVLLSNIYAAIG 325
            Y + +     + N GT+V +   Y+ +G
Sbjct: 438 AYNMMEEGRTIVPNQGTWVSILPAYSHVG 466



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 129/249 (51%), Gaps = 7/249 (2%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           + +V LT ++T YA  G+++ +   F  ++ K++  WN M+  Y + G   +++     +
Sbjct: 81  QDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTEL 140

Query: 99  LA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           L+   V P+  T   VL AC    +L  G  +H ++      + +V V  +LI++YS+ G
Sbjct: 141 LSLSGVRPDFYTFPPVLKAC---LSLADGEKMHCWVLK-MGFEHDVYVAASLIHLYSRFG 196

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +++ A  VF  +  +DV  WN+MI G+  +G   +AL++ + M    +K   +T   +L 
Sbjct: 197 AVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLP 256

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
            CA +  V  G    +    ++ +E  V     ++N+ S+ G++++A ++   M++  D 
Sbjct: 257 ICAQSNDV-VGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVR-DL 314

Query: 278 VLWGTLLGA 286
           V W +++ A
Sbjct: 315 VSWNSIIAA 323



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 5/180 (2%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTC----YAKQGEVAAARVLFDDMEE 69
            S++  Y+  G +    K+   + +  L     + TC    Y K G +  A  LF ++ +
Sbjct: 456 VSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQ 515

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +  V WN +I     HG   +AL LF+ M A+ V+ + +T V++LSAC   G ++  +W 
Sbjct: 516 ETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWC 575

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
              ++    IK N++    +++++ + G L+ A  LV +     D  +W +++    +HG
Sbjct: 576 FDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHG 635


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/443 (45%), Positives = 284/443 (64%), Gaps = 2/443 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R L     ++  YAK G V  A  +FD +  +D V WN M+  YAQ+G  +E++ L R 
Sbjct: 180 ERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCRE 239

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M A  V P E T V V+S+   +  L  GR IH +       + N +V TALI+MY+KCG
Sbjct: 240 MAANGVRPTEATLVTVISSSADVACLPYGREIHGF-GWRHGFQSNDKVKTALIDMYAKCG 298

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+K A  +F+R+ +K VV WN++I GYAMHG    AL LF++M R   +P  ITF+G+L+
Sbjct: 299 SVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKM-RKEDRPDHITFVGVLA 357

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+   L++EGR  +N M  +Y I P V+HY CM++LL   GQ++EAY L+ +M ++PDS
Sbjct: 358 ACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDS 417

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +WG LL +C++HGN+ L E   E LI     +SG YV+L+N+YA  G W+GV ++R +M
Sbjct: 418 GVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVM 477

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
            +K ++K   CS IE+ NKV+ FLAGD+ H  S  IY  L+ + G +   GY P T  V 
Sbjct: 478 IDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVF 537

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ E +K + +  HSE+LA+AFGLIST PGT + I KNLR+C DCH   K ISK   R+
Sbjct: 538 HDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMERE 597

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I +RD NR+H F +G CSCGD+W
Sbjct: 598 ITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YA    +  AR LFD + ++++  WNV+I GYA +G  + A++L+ +ML   + 
Sbjct: 86  TKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLR 145

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T   VL AC  + A+  GR IH Y+  S   + ++ VG ALI+MY+KCG + DA  
Sbjct: 146 PDNFTLPFVLKACSALSAIGEGRSIHEYVIKS-GWERDLFVGAALIDMYAKCGCVMDAGR 204

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++  +D V+WNSM+  YA +G   +++ L  EM    ++P++ T + ++S+ A    
Sbjct: 205 VFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVAC 264

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  GR       +  +    KV+    ++++ ++ G V+ A  L   ++ E   V W  +
Sbjct: 265 LPYGREIHGFGWRHGFQSNDKVK--TALIDMYAKCGSVKVALALFERLR-EKRVVSWNAI 321

Query: 284 LGACRLHGNIALG 296
           +    +HG +A+G
Sbjct: 322 ITGYAMHG-LAVG 333



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 99/186 (53%), Gaps = 11/186 (5%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            ++L +C    AL  G+ +H+   +   I  N  + T L+++Y+   SL +AR +FD++ 
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYH-LGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +++ +WN +I GYA +G   +A+ L+++M    L+P + T   +L AC+    + EGR 
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 231 FFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                  EY I+   E        ++++ ++ G V +A + V D  +  D+VLW ++L A
Sbjct: 170 IH-----EYVIKSGWERDLFVGAALIDMYAKCGCVMDAGR-VFDKIVVRDAVLWNSMLAA 223

Query: 287 CRLHGN 292
              +G+
Sbjct: 224 YAQNGH 229



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 35/199 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V T+L+D+YA+ G V  A  LF  + ++ +VS   ++T YA  G    A  LFD M ++D
Sbjct: 286 VKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED 345

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                                            P+ +T V VL+AC +   L+ GR +++
Sbjct: 346 --------------------------------RPDHITFVGVLAACSRGRLLDEGRALYN 373

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            +     I   VQ  T +I++   CG L +A  L+ +     D  VW +++    +HG  
Sbjct: 374 LMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNV 433

Query: 191 KDALQLFNEMCRIRLKPSD 209
           + A     ++  I L+P D
Sbjct: 434 ELAELALEKL--IELEPDD 450


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/431 (47%), Positives = 303/431 (70%), Gaps = 2/431 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK  ++  A  +FD++ ++++V W+ MI GYA+ GL NEAL LFR M    V 
Sbjct: 200 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 259

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+EVT V+V+SAC   GAL++G+W+H+YI N + I+ ++++ TAL+NMY+KCG ++ A+ 
Sbjct: 260 PDEVTMVSVISACAASGALDTGKWVHAYI-NKQLIETDLELSTALVNMYAKCGCIERAKE 318

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  KD   W+SMIVG A++G  +DAL+ F  M   ++KP+ +TFIG+LSACAH+GL
Sbjct: 319 VFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGL 378

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EGRR++++M  E+ I P +E YGCMV+LL RA  VE+A  LV  M I P+ V+W TLL
Sbjct: 379 VSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLL 437

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
             C+   N+   E +A+ L+     N+  Y+LLSN+YA++  W+ +++VR  MK  G++ 
Sbjct: 438 VGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKA 497

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCSSIE+   VHEF+ GD  HP++ E+  +L +I+  + A G+ P    VLH++ +++
Sbjct: 498 VPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEE 557

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+N+L  HSE+LA+A+GL+ T+   +I+IVKNLRVC DCH V K+IS    R+I++RDR 
Sbjct: 558 KENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYRREIIVRDRV 617

Query: 465 RFHHFVNGTCS 475
           RFH FVNG+CS
Sbjct: 618 RFHKFVNGSCS 628



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 133/239 (55%), Gaps = 5/239 (2%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEKVE-PNEVTAVA 112
           G++  AR LF  ++  ++  WN MI G +Q    + E ++LFR+M+      PN  T   
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           VL AC  + ALE G+ +H+ +  S     +  V TAL+N Y+KC  +  A  VFD + D+
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKS-GFGSSPFVETALVNFYAKCEDIVLASKVFDEITDR 225

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           ++V W++MI GYA  G   +AL LF +M +  + P ++T + ++SACA +G ++ G ++ 
Sbjct: 226 NLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG-KWV 284

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +   ++  IE  +E    +VN+ ++ G +E A K V D     D+  W +++    ++G
Sbjct: 285 HAYINKQLIETDLELSTALVNMYAKCGCIERA-KEVFDAMPVKDTKAWSSMIVGLAING 342



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 35/180 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           ++ DL +ST+LV++YA+ G +  A+++F  MP                            
Sbjct: 293 IETDLELSTALVNMYAKCGCIERAKEVFDAMPV--------------------------- 325

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
               KD   W+ MI G A +GLA +AL  F RM   KV+PN VT + VLSAC   G +  
Sbjct: 326 ----KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSE 381

Query: 126 G-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG 183
           G R+  S +E    I  ++++   ++++  +   ++DA  LV       + V+W +++VG
Sbjct: 382 GRRYWSSMLEF--GIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVG 439



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 42/211 (19%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM-HGFGKDALQLFNEMCRIRLK-PSDIT 211
           S  G +  AR +F ++   ++  WNSMI G +      K+ + LF +M R     P+  T
Sbjct: 104 SPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFT 163

Query: 212 FIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEH----------------------- 247
              +L AC+    + EG++   N +K  +   P VE                        
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 223

Query: 248 ------YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK 298
                 +  M++  +R G V EA  L  DM+   + PD V   +++ AC   G +  G+ 
Sbjct: 224 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKW 283

Query: 299 IAEY----LISQNLANSGTYVLLSNIYAAIG 325
           +  Y    LI  +L  S   V   N+YA  G
Sbjct: 284 VHAYINKQLIETDLELSTALV---NMYAKCG 311


>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Brachypodium distachyon]
          Length = 884

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/440 (46%), Positives = 288/440 (65%), Gaps = 6/440 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AEK 102
           T+++  YA  G    AR +FD+M  KD V WNV+I  YA++    + L LF  M     +
Sbjct: 447 TSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESE 506

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKD 161
           V+P+EVT + +L AC  +GAL+ G  I  Y +E+    ++ V+   ++I MY++CG ++ 
Sbjct: 507 VKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVR--NSVITMYTRCGCVEK 564

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VF     K VV W++MI+G A +GFG+DA+  F EM R  + P   TF G+LSAC+H
Sbjct: 565 AYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSH 624

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM-DMKIEPDSVLW 280
           +GLV+EG RFF+ M+ EY + P V HYGC+V+L+ RAG ++EAY+LV+ +MK+ PD+ +W
Sbjct: 625 SGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIW 684

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            TLLGACR+HG++ LGEK+  +LI      +G YVLL N YAA G+W+ VA VR LM+E 
Sbjct: 685 RTLLGACRIHGHVDLGEKVISHLIELKAQQAGDYVLLLNTYAAAGDWEKVAEVRKLMREN 744

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            +Q  PGC+++EL+ ++HEF+A D  HP+  EIY  L+EIN  L+  GYVP     LHD+
Sbjct: 745 EIQTTPGCTTVELNGELHEFIADDASHPRKAEIYGKLDEINRHLRIAGYVPHVSSDLHDL 804

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
             + K+ +L  HSEKLA+AF L+       I++ KNLRVC DCH   K+ S    R +++
Sbjct: 805 DSEGKECALTYHSEKLAIAFALLVMPQRRPIRLAKNLRVCVDCHNFTKVFSGVYNRLVIV 864

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDR RFHHF  G CSC DYW
Sbjct: 865 RDRTRFHHFNGGQCSCNDYW 884



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 33/182 (18%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L V  S++ +Y R G V  A ++F   PQ+S+V+                         
Sbjct: 545 ELKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVT------------------------- 579

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 W+ MI G A +G   +A+  F  M    V P+  T   VLSAC   G ++ G  
Sbjct: 580 ------WSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFR 633

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVN-DKDVVVWNSMIVGYAM 186
               +     +  NV+    ++++  + G L +A  LV   +    D  +W +++    +
Sbjct: 634 FFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRTLLGACRI 693

Query: 187 HG 188
           HG
Sbjct: 694 HG 695


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 298/460 (64%), Gaps = 5/460 (1%)

Query: 25  DVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           D  + E++++   +  + S+     ++++ YA+ G +  AR  FD + EK++V +N ++D
Sbjct: 171 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 230

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GYA++  + EA +LF  +    +  +  T  ++LS    IGA+  G  IH  +      K
Sbjct: 231 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYK 289

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            N  +  ALI+MYS+CG+++ A  VF+ + D++V+ W SMI G+A HGF   AL++F++M
Sbjct: 290 SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM 349

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
                KP++IT++ +LSAC+H G+++EG++ FN+M  E+ I P++EHY CMV+LL R+G 
Sbjct: 350 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 409

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           + EA + +  M +  D+++W TLLGACR+HGN  LG   AE ++ Q   +   Y+LLSN+
Sbjct: 410 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 469

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           +A+ G W  V ++R  MKE+ + KE GCS IE+ N+VH F  G+  HP++ +IY  L+++
Sbjct: 470 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQL 529

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
              +K  GY+P T  VLHDI E+QK+  L  HSEK+AVAFGLIST     I+I KNLRVC
Sbjct: 530 ASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 589

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K IS  TGR+I++RD NRFHH  NG CSC DYW
Sbjct: 590 GDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 8/304 (2%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN-EALVLFRRMLAE 101
           SL  M    A  G V  +R +F+ M E +V+ W  +I  YAQ G  + EA+ LF +M++ 
Sbjct: 91  SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISG 150

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            + PN  +  +VL ACG +    +G  ++SY        VN  VG +LI+MY++ G ++D
Sbjct: 151 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMED 209

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           AR  FD + +K++V +N+++ GYA +   ++A  LFNE+    +  S  TF  LLS  A 
Sbjct: 210 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 269

Query: 222 AGLVNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            G + +G +     +K  Y     +     ++++ SR G +E A+++  +M+ + + + W
Sbjct: 270 IGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEME-DRNVISW 326

Query: 281 GTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMK 338
            +++     HG      E   + L +    N  TYV + +  + +G   +G     ++ K
Sbjct: 327 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 386

Query: 339 EKGV 342
           E G+
Sbjct: 387 EHGI 390



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 134/235 (57%), Gaps = 15/235 (6%)

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
           A A  +FD M E+++V W +MI  +AQ G A +A+ LF  M      P+  T  +VLSAC
Sbjct: 2   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 61

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVNDKDV 174
            ++G L  G+ +HS +     + ++V VG +L++MY+KC   GS+ D+R VF+++ + +V
Sbjct: 62  TELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 120

Query: 175 VVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           + W ++I  YA  G   K+A++LF +M    ++P+  +F  +L AC +      G + ++
Sbjct: 121 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 180

Query: 234 TMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                YA++  +    C    ++++ +R+G++E+A K   D+  E + V +  ++
Sbjct: 181 -----YAVKLGIASVNCVGNSLISMYARSGRMEDARK-AFDILFEKNLVSYNAIV 229



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 41/236 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+ +Y+R G++ +A ++F  M  R+++S T+M+T +AK                  
Sbjct: 294 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK------------------ 335

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG A  AL +F +ML    +PNE+T VAVLSAC  +G +  G+   +
Sbjct: 336 -------------HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 382

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG-- 188
            +     I   ++    ++++  + G L +A    + +    D +VW +++    +HG  
Sbjct: 383 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 442

Query: 189 -FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
             G+ A ++  E      +P D   +I L +  A AG   +  +   +MK+   I+
Sbjct: 443 ELGRHAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 493


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/479 (43%), Positives = 301/479 (62%), Gaps = 53/479 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ D +V  SLVD+Y + G++    +LF   PQR+                     
Sbjct: 165 MKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRN--------------------- 203

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                 + + ++ WN                          V PN++T V+ L AC +IG
Sbjct: 204 ------KAESILLWN-------------------------GVRPNDLTVVSALLACTKIG 232

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G  IH+Y+ +S   ++N  +GTAL++MY+KCG++K A  VF     KD++ W+ MI
Sbjct: 233 ALQVGERIHNYL-SSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMI 291

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G+A+HG    ALQ F +M    + P ++ F+ +L+AC+H+G V++G  FF +M+ +Y+I
Sbjct: 292 WGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSI 351

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP ++HY  +V+LL RAG+++EA   +  M I PD V+WG L  ACR H NI + E  AE
Sbjct: 352 EPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAE 411

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+     + G+YV LSN+YAA+G W+ V RVRTLMK +GV+K+PG S IE+  +VH F+
Sbjct: 412 KLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFV 471

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           AGD  H +++EI + LEEI    K EGY+P+T  VLH+I E++K+++L  HSEKLA+AFG
Sbjct: 472 AGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFG 531

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LIST PG++I+IVKNLRVC DCH++ K  SK + R+I++RD  RFHHF +GTCSCGDYW
Sbjct: 532 LISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 26/238 (10%)

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           Q+  + +  ++H+   NSR       V T LI+      SL  A  +F   +  ++ V+N
Sbjct: 55  QLHQIHAQIFLHNLFSNSR-------VVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFN 107

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA-----------CAHAGLVNE 227
           ++I G A +   + ++  F  M R+ ++P  +T   +L +           C H G++  
Sbjct: 108 ALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKL 167

Query: 228 GRRFFN----TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           G  F +    ++ D Y    K+   G  + L   + Q  +A  +++   + P+ +   + 
Sbjct: 168 GLEFDSFVRVSLVDMYV---KIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSA 224

Query: 284 LGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           L AC   G + +GE+I  YL S     N G    L ++YA  GN    +RV    K K
Sbjct: 225 LLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGK 282


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/437 (46%), Positives = 285/437 (65%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  + K G ++ A  +F+ +E KDV+ W+ M+ GYAQ G   EA  +F ++  E ++
Sbjct: 441 TALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIK 500

Query: 105 PNEVTAVAVLSAC-GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  ++++AC     ++E G+  H+Y    R +   + V ++L+ +Y+K G+++ A 
Sbjct: 501 PNEFTFCSIINACTAPTASVEQGKQFHAYAIKLR-LNNALCVSSSLVTLYAKRGNIESAH 559

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F R  ++D+V WNSMI GYA HG  K AL++F EM +  L+   ITFIG++SACAHAG
Sbjct: 560 EIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAG 619

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV +G+ +FN M +++ I P +EHY CM++L SRAG + +A  ++  M   P + +W  +
Sbjct: 620 LVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIV 679

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L A R+H NI LG+  AE +IS    +S  YVLLSNIYAA GNW     VR LM ++ V+
Sbjct: 680 LAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVK 739

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPG S IE+ NK + FLAGDL HP S  IY  L E+N  L+  GY P T  V HDI ++
Sbjct: 740 KEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDE 799

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L  HSE+LA+AFGLI+T P   ++IVKNLRVC DCH+  KL+S    R I++RD 
Sbjct: 800 QKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDS 859

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G CSCGDYW
Sbjct: 860 NRFHHFKGGLCSCGDYW 876



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 145/271 (53%), Gaps = 17/271 (6%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           LT ++    K  E+  A  LF  M   + VV W  MI GY Q+G  ++A+ LF  M  E 
Sbjct: 342 LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREG 401

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V+PN  T   +L+    +   E    IH+ +  + N + +  VGTAL++ + K G++ DA
Sbjct: 402 VKPNHFTYSTILTVQHAVFISE----IHAEVIKT-NYEKSSSVGTALLDAFVKIGNISDA 456

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AH 221
             VF+ +  KDV+ W++M+ GYA  G  ++A ++F+++ R  +KP++ TF  +++AC A 
Sbjct: 457 VKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAP 516

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDS 277
              V +G++F       YAI+ ++ +  C    +V L ++ G +E A+++    K E D 
Sbjct: 517 TASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDL 570

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           V W +++     HG      ++ E +  +NL
Sbjct: 571 VSWNSMISGYAQHGQAKKALEVFEEMQKRNL 601



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 9/179 (5%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G V   R +FD+M ++DVV WN ++ GY+ +   ++   LF  M  E   P
Sbjct: 142 SLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRP 201

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKD 161
           +  T   V++A    GA+  G  IH+ +     +K+  +    V  +LI+M SK G L+D
Sbjct: 202 DYYTVSTVIAALANQGAVAIGMQIHALV-----VKLGFETERLVCNSLISMLSKSGMLRD 256

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           AR+VFD + +KD V WNSMI G+ ++G   +A + FN M     KP+  TF  ++ +CA
Sbjct: 257 ARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 11/280 (3%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A+ LFD    +D+   N ++  Y++     EAL LF  +    + P+  T   VLS C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
                 G  +H        +  ++ VG +L++MY+K G+++D R VFD + D+DVV WNS
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVH-HLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           ++ GY+ + F     +LF  M     +P   T   +++A A+ G V  G +  + +  + 
Sbjct: 174 LLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQ-IHALVVKL 232

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
             E +      ++++LS++G + +A ++V D     DSV W +++      G++  G+ +
Sbjct: 233 GFETERLVCNSLISMLSKSGMLRDA-RVVFDNMENKDSVSWNSMIA-----GHVINGQDL 286

Query: 300 AEYLISQNLANSG---TYVLLSNIYAAIGNWDGVARVRTL 336
             +    N+  +G   T+   +++  +  +   +  VR L
Sbjct: 287 EAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVL 326



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+  L VS+SLV LYA+ G++ SA ++F    +R LVS  +M++ YA+ G+   A 
Sbjct: 531 IKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKAL 590

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F++M++++                               +E + +T + V+SAC   G
Sbjct: 591 EVFEEMQKRN-------------------------------LEVDAITFIGVISACAHAG 619

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            +  G+   + + N  +I   ++  + +I++YS+ G L  A
Sbjct: 620 LVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKA 660


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/432 (46%), Positives = 288/432 (66%), Gaps = 3/432 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEV 108
           YAK G V +AR +F+ +  KDV+ WN +I GYAQ+G A+EA+ ++  M  E  ++  N+ 
Sbjct: 394 YAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQG 453

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           T V+VL AC Q GAL  G  +H  +  +  + ++V VGT+L +MY KCG L DA  +F +
Sbjct: 454 TWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQ 512

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           +   + V WN++I  +  HG G+ A+ LF EM    +KP  ITF+ LLSAC+H+GLV+EG
Sbjct: 513 IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 572

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
              F  M+ +Y I P ++HYGCMV+L  RAGQ+E A   +  M ++PD+ +WG LL ACR
Sbjct: 573 EWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACR 632

Query: 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGC 348
           +HGN+ LG+  +E+L      + G +VLLSN+YA+ G W+GV  +R++   KG++K PG 
Sbjct: 633 VHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGW 692

Query: 349 SSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNS 408
           SS+E+ NKV  F  G+  HP  +E+Y  L  ++  LK  GYVP  + VL D+ + +K++ 
Sbjct: 693 SSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHI 752

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           L  HSE+LA+AF LI+T   T+I+I KNLRVC DCH+V K ISK T R+I++RD NRFHH
Sbjct: 753 LMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHH 812

Query: 469 FVNGTCSCGDYW 480
           F NG CSCGDYW
Sbjct: 813 FKNGVCSCGDYW 824



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 142/276 (51%), Gaps = 15/276 (5%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y + G V  AR+LFD+M  +D+  WN MI GY Q G A EAL L   + A     
Sbjct: 190 SLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM---- 245

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT V++LSAC + G    G  IHSY      ++  + V   LI++Y++ GSLKD + V
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELFVSNKLIDLYAEFGSLKDCQKV 304

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR+  +D++ WNS+I  Y ++     A+ LF EM   R++P  +T I L S  +  G +
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEI 364

Query: 226 NEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              R     T++  + +E  +     +V + ++ G V+ A + V +     D + W T++
Sbjct: 365 RACRSVQGFTLRKGWFLE-DITIGNAVVVMYAKLGLVDSA-RAVFNWLPNKDVISWNTII 422

Query: 285 GACRLHGNIALGEKIAEYLISQN-----LANSGTYV 315
                +G  +  E I  Y I +       AN GT+V
Sbjct: 423 SGYAQNGFAS--EAIEMYNIMEEEGGEISANQGTWV 456



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 150/301 (49%), Gaps = 40/301 (13%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K  L+ +L+VS  L+DLYA  G +   +K+F                           
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGSLKDCQKVF--------------------------- 305

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
               D M  +D++ WN +I  Y  +     A++LF+ M   +++P+ +T +++ S   Q+
Sbjct: 306 ----DRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G + + R +  +         ++ +G A++ MY+K G +  AR VF+ + +KDV+ WN++
Sbjct: 362 GEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTI 421

Query: 181 IVGYAMHGFGKDALQLFNEMCRI--RLKPSDITFIGLLSACAHAGLVNEGRRFFNT-MKD 237
           I GYA +GF  +A++++N M      +  +  T++ +L AC+ AG + +G +     +K+
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 481

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
              ++  V     + ++  + G++++A  L   +    +SV W TL+     HG+   GE
Sbjct: 482 GLYLDVFVG--TSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGH---GE 535

Query: 298 K 298
           K
Sbjct: 536 K 536



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 13/246 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR-MLAEKVEP 105
           ++  Y   G VA AR  FD +  +DV  WN+MI GY + G ++E +  F   ML+  ++P
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T  +VL AC  +     G  IH  +        +V V  +LI++Y + G++ +AR++
Sbjct: 152 DYRTFPSVLKACRNV---TDGNKIHC-LALKFGFMWDVYVAASLIHLYCRYGAVVNARIL 207

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGL 224
           FD +  +D+  WN+MI GY   G  K+AL L +      L+  D +T + LLSAC  AG 
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDG-----LRAMDSVTVVSLLSACTEAGD 262

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            N G    ++   ++ +E ++     +++L +  G +++  K V D     D + W +++
Sbjct: 263 FNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQK-VFDRMYVRDLISWNSII 320

Query: 285 GACRLH 290
            A  L+
Sbjct: 321 KAYELN 326



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T++   Y K G +  A  LF  +   + V WN +I  +  HG   +A++LF+ ML E V+
Sbjct: 491 TSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVK 550

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           P+ +T V +LSAC   G ++ G W    ++    I  +++    ++++Y + G L+ A  
Sbjct: 551 PDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALN 610

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHG 188
            +       D  +W +++    +HG
Sbjct: 611 FIKSMPLQPDASIWGALLSACRVHG 635



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 43/246 (17%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+S + +H+ +  S  I+ NV +   L+N+Y   G++  AR  FD ++++DV  WN MI 
Sbjct: 67  LQSAKCLHARLVVSNAIQ-NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMIS 125

Query: 183 GYAMHGFGKDALQLFN-EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF------FNTM 235
           GY   G+  + ++ F+  M    L+P   TF  +L AC +   V +G +       F  M
Sbjct: 126 GYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFM 182

Query: 236 KDEYAIEPKVE---HYGCMVNL---------------------LSRAGQVEEAYKLVMDM 271
            D Y     +     YG +VN                        ++G  +EA  L   +
Sbjct: 183 WDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGL 242

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNW 327
           +   DSV   +LL AC   G+   G  I  Y I   L +    + +SN    +YA  G+ 
Sbjct: 243 R-AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESE---LFVSNKLIDLYAEFGSL 298

Query: 328 DGVARV 333
               +V
Sbjct: 299 KDCQKV 304


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 298/460 (64%), Gaps = 5/460 (1%)

Query: 25  DVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           D  + E++++   +  + S+     ++++ YA+ G +  AR  FD + EK++V +N ++D
Sbjct: 176 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 235

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GYA++  + EA +LF  +    +  +  T  ++LS    IGA+  G  IH  +      K
Sbjct: 236 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYK 294

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            N  +  ALI+MYS+CG+++ A  VF+ + D++V+ W SMI G+A HGF   AL++F++M
Sbjct: 295 SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM 354

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
                KP++IT++ +LSAC+H G+++EG++ FN+M  E+ I P++EHY CMV+LL R+G 
Sbjct: 355 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 414

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           + EA + +  M +  D+++W TLLGACR+HGN  LG   AE ++ Q   +   Y+LLSN+
Sbjct: 415 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 474

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           +A+ G W  V ++R  MKE+ + KE GCS IE+ N+VH F  G+  HP++ +IY  L+++
Sbjct: 475 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQL 534

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
              +K  GY+P T  VLHDI E+QK+  L  HSEK+AVAFGLIST     I+I KNLRVC
Sbjct: 535 ASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 594

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K IS  TGR+I++RD NRFHH  NG CSC DYW
Sbjct: 595 GDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 156/304 (51%), Gaps = 8/304 (2%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN-EALVLFRRMLAE 101
           SL  M    A  G V  +R +F+ M E +V+ W  +I  YAQ G  + EA+ LF +M++ 
Sbjct: 96  SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISG 155

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            + PN  +  +VL ACG +    +G  ++SY        VN  VG +LI+MY++ G ++D
Sbjct: 156 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMED 214

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           AR  FD + +K++V +N+++ GYA +   ++A  LFNE+    +  S  TF  LLS  A 
Sbjct: 215 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 274

Query: 222 AGLVNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            G + +G +     +K  Y     +     ++++ SR G +E A+++  +M+ + + + W
Sbjct: 275 IGAMGKGEQIHGRLLKGGYKSNQCI--CNALISMYSRCGNIEAAFQVFNEME-DRNVISW 331

Query: 281 GTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMK 338
            +++     HG      E   + L +    N  TYV + +  + +G   +G     ++ K
Sbjct: 332 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 391

Query: 339 EKGV 342
           E G+
Sbjct: 392 EHGI 395



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 134/235 (57%), Gaps = 15/235 (6%)

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
           A A  +FD M E+++V W +MI  +AQ G A +A+ LF  M      P+  T  +VLSAC
Sbjct: 7   APAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 66

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVNDKDV 174
            ++G L  G+ +HS +     + ++V VG +L++MY+KC   GS+ D+R VF+++ + +V
Sbjct: 67  TELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 125

Query: 175 VVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           + W ++I  YA  G   K+A++LF +M    ++P+  +F  +L AC +      G + ++
Sbjct: 126 MSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 185

Query: 234 TMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                YA++  +    C    ++++ +R+G++E+A K   D+  E + V +  ++
Sbjct: 186 -----YAVKLGIASVNCVGNSLISMYARSGRMEDARK-AFDILFEKNLVSYNAIV 234



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 41/236 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+ +Y+R G++ +A ++F  M  R+++S T+M+T +AK                  
Sbjct: 299 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK------------------ 340

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG A  AL +F +ML    +PNE+T VAVLSAC  +G +  G+   +
Sbjct: 341 -------------HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 387

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG-- 188
            +     I   ++    ++++  + G L +A    + +    D +VW +++    +HG  
Sbjct: 388 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 447

Query: 189 -FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
             G+ A ++  E      +P D   +I L +  A AG   +  +   +MK+   I+
Sbjct: 448 ELGRHAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 498


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 298/460 (64%), Gaps = 5/460 (1%)

Query: 25  DVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           D  + E++++   +  + S+     ++++ YA+ G +  AR  FD + EK++V +N ++D
Sbjct: 369 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 428

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GYA++  + EA +LF  +    +  +  T  ++LS    IGA+  G  IH  +      K
Sbjct: 429 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYK 487

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            N  +  ALI+MYS+CG+++ A  VF+ + D++V+ W SMI G+A HGF   AL++F++M
Sbjct: 488 SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM 547

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
                KP++IT++ +LSAC+H G+++EG++ FN+M  E+ I P++EHY CMV+LL R+G 
Sbjct: 548 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 607

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           + EA + +  M +  D+++W TLLGACR+HGN  LG   AE ++ Q   +   Y+LLSN+
Sbjct: 608 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 667

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           +A+ G W  V ++R  MKE+ + KE GCS IE+ N+VH F  G+  HP++ +IY  L+++
Sbjct: 668 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQL 727

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
              +K  GY+P T  VLHDI E+QK+  L  HSEK+AVAFGLIST     I+I KNLRVC
Sbjct: 728 ASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 787

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K IS  TGR+I++RD NRFHH  NG CSC DYW
Sbjct: 788 GDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 167/347 (48%), Gaps = 40/347 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           ++  L  D+ V  SLVD+YA+    G V  + K+F  MP+ +++S T ++T Y + GE  
Sbjct: 276 IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC- 334

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
                                          EA+ LF +M++  + PN  +  +VL ACG
Sbjct: 335 -----------------------------DKEAIELFCKMISGHIRPNHFSFSSVLKACG 365

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +    +G  ++SY        VN  VG +LI+MY++ G ++DAR  FD + +K++V +N
Sbjct: 366 NLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVSYN 424

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT-MKD 237
           +++ GYA +   ++A  LFNE+    +  S  TF  LLS  A  G + +G +     +K 
Sbjct: 425 AIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG 484

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG- 296
            Y     +     ++++ SR G +E A+++  +M+ + + + W +++     HG      
Sbjct: 485 GYKSNQCI--CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRAL 541

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMKEKGV 342
           E   + L +    N  TYV + +  + +G   +G     ++ KE G+
Sbjct: 542 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 588



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 136/238 (57%), Gaps = 15/238 (6%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G++ +A  +FD M E+++V W +MI  +AQ G A +A+ LF  M      P+  T  +VL
Sbjct: 197 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 256

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVND 171
           SAC ++G L  G+ +HS +     + ++V VG +L++MY+KC   GS+ D+R VF+++ +
Sbjct: 257 SACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 315

Query: 172 KDVVVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +V+ W ++I  Y   G   K+A++LF +M    ++P+  +F  +L AC +      G +
Sbjct: 316 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 375

Query: 231 FFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++     YA++  +    C    ++++ +R+G++E+A K   D+  E + V +  ++
Sbjct: 376 VYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARK-AFDILFEKNLVSYNAIV 427



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 178/395 (45%), Gaps = 54/395 (13%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQH 85
           L   KL  +  +   V L T+++ Y+K G+   AR++F+ M  ++D+V W+ M+  +A +
Sbjct: 65  LVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANN 124

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
            +  +A+  F  ML     PNE    AV+ AC        G  I+ ++  +  ++ +V V
Sbjct: 125 SMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCV 184

Query: 146 GTALINMYSK-CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           G  LI+M+ K  G L  A  VFD++ ++++V W  MI  +A  G  +DA+ LF +M    
Sbjct: 185 GCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSG 244

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFN---------------TMKDEYA--------- 240
             P   T+  +LSAC   GL+  G++  +               ++ D YA         
Sbjct: 245 YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 304

Query: 241 -----IEPKVEH----YGCMVNLLSRAGQVE-EAYKLVMDM---KIEPDSVLWGTLLGAC 287
                 E   EH    +  ++    ++G+ + EA +L   M    I P+   + ++L AC
Sbjct: 305 DSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 364

Query: 288 RLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
               +   GE++  Y +   +A  N     L+S +YA  G  +   +   ++ EK +   
Sbjct: 365 GNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS-MYARSGRMEDARKAFDILFEKNLV-- 421

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
                       +  + G  ++ KS+E +++  EI
Sbjct: 422 ----------SYNAIVDGYAKNLKSEEAFLLFNEI 446



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 41/236 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+ +Y+R G++ +A ++F  M  R+++S T+M+T +AK                  
Sbjct: 492 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK------------------ 533

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG A  AL +F +ML    +PNE+T VAVLSAC  +G +  G+   +
Sbjct: 534 -------------HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 580

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG-- 188
            +     I   ++    ++++  + G L +A    + +    D +VW +++    +HG  
Sbjct: 581 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 640

Query: 189 -FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
             G+ A ++  E      +P D   +I L +  A AG   +  +   +MK+   I+
Sbjct: 641 ELGRHAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 691


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 298/460 (64%), Gaps = 5/460 (1%)

Query: 25  DVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           D  + E++++   +  + S+     ++++ YA+ G +  AR  FD + EK++V +N ++D
Sbjct: 351 DPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVD 410

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GYA++  + EA +LF  +    +  +  T  ++LS    IGA+  G  IH  +      K
Sbjct: 411 GYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYK 469

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            N  +  ALI+MYS+CG+++ A  VF+ + D++V+ W SMI G+A HGF   AL++F++M
Sbjct: 470 SNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKM 529

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
                KP++IT++ +LSAC+H G+++EG++ FN+M  E+ I P++EHY CMV+LL R+G 
Sbjct: 530 LETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGL 589

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           + EA + +  M +  D+++W TLLGACR+HGN  LG   AE ++ Q   +   Y+LLSN+
Sbjct: 590 LVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNL 649

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           +A+ G W  V ++R  MKE+ + KE GCS IE+ N+VH F  G+  HP++ +IY  L+++
Sbjct: 650 HASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQL 709

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
              +K  GY+P T  VLHDI E+QK+  L  HSEK+AVAFGLIST     I+I KNLRVC
Sbjct: 710 ASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVC 769

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K IS  TGR+I++RD NRFHH  NG CSC DYW
Sbjct: 770 GDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 167/347 (48%), Gaps = 40/347 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           ++  L  D+ V  SLVD+YA+    G V  + K+F  MP+ +++S T ++T Y + GE  
Sbjct: 258 IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC- 316

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
                                          EA+ LF +M++  + PN  +  +VL ACG
Sbjct: 317 -----------------------------DKEAIELFCKMISGHIRPNHFSFSSVLKACG 347

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +    +G  ++SY        VN  VG +LI+MY++ G ++DAR  FD + +K++V +N
Sbjct: 348 NLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVSYN 406

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT-MKD 237
           +++ GYA +   ++A  LFNE+    +  S  TF  LLS  A  G + +G +     +K 
Sbjct: 407 AIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG 466

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG- 296
            Y     +     ++++ SR G +E A+++  +M+ + + + W +++     HG      
Sbjct: 467 GYKSNQCI--CNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRAL 523

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMKEKGV 342
           E   + L +    N  TYV + +  + +G   +G     ++ KE G+
Sbjct: 524 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 570



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 136/238 (57%), Gaps = 15/238 (6%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G++ +A  +FD M E+++V W +MI  +AQ G A +A+ LF  M      P+  T  +VL
Sbjct: 179 GDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVL 238

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVND 171
           SAC ++G L  G+ +HS +     + ++V VG +L++MY+KC   GS+ D+R VF+++ +
Sbjct: 239 SACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 297

Query: 172 KDVVVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +V+ W ++I  Y   G   K+A++LF +M    ++P+  +F  +L AC +      G +
Sbjct: 298 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 357

Query: 231 FFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++     YA++  +    C    ++++ +R+G++E+A K   D+  E + V +  ++
Sbjct: 358 VYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDARK-AFDILFEKNLVSYNAIV 409



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 178/395 (45%), Gaps = 54/395 (13%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQH 85
           L   KL  +  +   V L T+++ Y+K G+   AR++F+ M  ++D+V W+ M+  +A +
Sbjct: 47  LVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANN 106

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
            +  +A+  F  ML     PNE    AV+ AC        G  I+ ++  +  ++ +V V
Sbjct: 107 SMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCV 166

Query: 146 GTALINMYSK-CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           G  LI+M+ K  G L  A  VFD++ ++++V W  MI  +A  G  +DA+ LF +M    
Sbjct: 167 GCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSG 226

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFN---------------TMKDEYA--------- 240
             P   T+  +LSAC   GL+  G++  +               ++ D YA         
Sbjct: 227 YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 286

Query: 241 -----IEPKVEH----YGCMVNLLSRAGQVE-EAYKLVMDM---KIEPDSVLWGTLLGAC 287
                 E   EH    +  ++    ++G+ + EA +L   M    I P+   + ++L AC
Sbjct: 287 DSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 346

Query: 288 RLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
               +   GE++  Y +   +A  N     L+S +YA  G  +   +   ++ EK +   
Sbjct: 347 GNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS-MYARSGRMEDARKAFDILFEKNLV-- 403

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
                       +  + G  ++ KS+E +++  EI
Sbjct: 404 ----------SYNAIVDGYAKNLKSEEAFLLFNEI 428



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 41/236 (17%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+ +Y+R G++ +A ++F  M  R+++S T+M+T +AK                  
Sbjct: 474 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK------------------ 515

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG A  AL +F +ML    +PNE+T VAVLSAC  +G +  G+   +
Sbjct: 516 -------------HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFN 562

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG-- 188
            +     I   ++    ++++  + G L +A    + +    D +VW +++    +HG  
Sbjct: 563 SMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 622

Query: 189 -FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
             G+ A ++  E      +P D   +I L +  A AG   +  +   +MK+   I+
Sbjct: 623 ELGRHAAEMILEQ-----EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIK 673


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/482 (45%), Positives = 299/482 (62%), Gaps = 8/482 (1%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAK-QGEVAAARV 62
           F+L   L   T L DL   GG     + +     Q S V  + ++  Y+K  G ++  R 
Sbjct: 241 FTLASVLTAFTCLEDL--SGGLQFHGQLIKTGFHQNSHVG-SGLIDLYSKCGGGMSDCRK 297

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHG-LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +F+++ E D+V WN M+ GY+Q+     +AL  FR+M      PN+ + V V+SAC  + 
Sbjct: 298 VFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLS 357

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +   G+ IHS    S      + V  ALI MYSKCG+L+DAR +FDR+ + + V  NSMI
Sbjct: 358 SPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMI 417

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG   ++L LF  M   ++ P+ ITFI +LSACAH G V EG  +FN MK+++ I
Sbjct: 418 AGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNI 477

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP+ EHY CM++LL RAG++ EA  L+  M   P S+ W +LLGACR HGNI L  K A 
Sbjct: 478 EPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAAN 537

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            ++    +N+  YV+LSN+YA+ G W+ VA VR  M+++GV+K+PGCS IE+  ++H F+
Sbjct: 538 QVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFV 597

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL-HDIGEK--QKQNSLEVHSEKLAV 418
           A D  HP  KEIY  LEE++G +K  GYVP  +  L  D G +  +K+  L  HSEKLAV
Sbjct: 598 AEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAV 657

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGLIST+ G  + +VKNLR+C DCH   K IS   GR+I +RD +RFH F  G CSCGD
Sbjct: 658 AFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGD 717

Query: 479 YW 480
           YW
Sbjct: 718 YW 719



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 17/290 (5%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  +    Y S   + LY++ G +  A K F  +   ++ S   ++  YAK+     A 
Sbjct: 35  IKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAH 94

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC---- 117
            LFD + E D+V +N +I  YA  G    AL LF  M    ++ +  T  AV++AC    
Sbjct: 95  QLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDV 154

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVV 176
           G IG L S       +  S      V V  AL+  Y K G L DA+ VF  +   +D V 
Sbjct: 155 GLIGQLHS-------VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVS 207

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM- 235
           WNSMIV Y  H  G  AL LF EM R  L     T   +L+A      ++ G +F   + 
Sbjct: 208 WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 236 KDEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           K  +    +  H G  +++L S+ G      + V +   EPD VLW T++
Sbjct: 268 KTGFH---QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/448 (45%), Positives = 299/448 (66%), Gaps = 15/448 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEKV 103
           T++  Y++ G++  A  +F  ME++D+V WN MI GY       +AL+L  +M  L  KV
Sbjct: 445 TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKV 504

Query: 104 ---------EPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMY 153
                    +PN +T + +L +C  + AL  G+ IH+Y I+N  N+  +V VG+AL++MY
Sbjct: 505 SKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSALVDMY 562

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +KCG L+ +R VFD++  K+V+ WN +I+ Y MHG G++A+ L   M    +KP+++TFI
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            + +AC+H+G+V+EG R F  MK +Y +EP  +HY C+V+LL RAG+++EAY+L+  M  
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682

Query: 274 EPDSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
           + +    W +LLGA R+H N+ +GE  A+ LI      +  YVLL+NIY++ G WD    
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
           VR  MKE+GV+KEPGCS IE  ++VH+F+AGD  HP+S+++   LE +   ++ EGYVP 
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           T  VLH++ E +K+  L  HSEKLA+AFG+++T PGT I++ KNLRVC DCH   K ISK
Sbjct: 803 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 862

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              R+I++RD  RFH F NGTCSCGDYW
Sbjct: 863 IVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 161/345 (46%), Gaps = 46/345 (13%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + T++  Y K G++A+++VL      +D+V WN ++    Q+    EAL   R M+ E V
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV 298

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+E T  +VL AC  +  L +G+ +H+Y   + ++  N  VG+AL++MY  C  +   R
Sbjct: 299 EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGR 358

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHA 222
            VFD + D+ + +WN+MI GY+ +   K+AL LF  M     L  +  T  G++ AC  +
Sbjct: 359 RVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRS 418

Query: 223 G-----------LVNEG---RRFF-NTMKDEYAIEPKV---------------------- 245
           G           +V  G    RF  NT+ D Y+   K+                      
Sbjct: 419 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 478

Query: 246 ------EHYGCMVNLLSRAGQVE-EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
                 EH+   + LL +   +E +  K    + ++P+S+   T+L +C     +A G++
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 538

Query: 299 IAEYLISQNLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           I  Y I  NLA        L ++YA  G      +V   + +K V
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 48/301 (15%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           SLD++ +V ++LVD+Y                             C  KQ  V + R +F
Sbjct: 333 SLDENSFVGSALVDMY-----------------------------CNCKQ--VLSGRRVF 361

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGAL 123
           D M ++ +  WN MI GY+Q+    EAL+LF  M  +  +  N  T   V+ AC + GA 
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
                IH ++   R +  +  V   L++MYS+ G +  A  +F ++ D+D+V WN+MI G
Sbjct: 422 SRKEAIHGFVVK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 184 YAMHGFGKDALQLFNEM-----------CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           Y      +DAL L ++M            R+ LKP+ IT + +L +CA    + +G+   
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 233 N-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +K+  A +  V     +V++ ++ G ++ + K V D   + + + W  ++ A  +HG
Sbjct: 541 AYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRK-VFDQIPQKNVITWNVIIMAYGMHG 597

Query: 292 N 292
           N
Sbjct: 598 N 598



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 5/195 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S+    T++  Y K G+  A   +FD + E++ V WN +I           AL  FR ML
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 100 AEKVEPNEVTAVAVLSACGQIGALES---GRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            E VEP+  T V+V++AC  +   E    G+ +H+Y    R  ++N  +   L+ MY K 
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY--GLRKGELNSFIINTLVAMYGKL 249

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  ++++      +D+V WN+++     +    +AL+   EM    ++P + T   +L
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309

Query: 217 SACAHAGLVNEGRRF 231
            AC+H  ++  G+  
Sbjct: 310 PACSHLEMLRTGKEL 324



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 104/200 (52%), Gaps = 11/200 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YAK G +  +R +FD + +K+V+ WNV+I  Y  HG   EA+ L R M+ + V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNEVT ++V +AC   G ++ G  I   ++    ++ +      ++++  + G +K+A  
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675

Query: 165 VFDRV--NDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDIT-FIGLLSA 218
           + + +  +      W+S++    +H     G+ A Q       I+L+P+  + ++ L + 
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVASHYVLLANI 730

Query: 219 CAHAGLVNEGRRFFNTMKDE 238
            + AGL ++       MK++
Sbjct: 731 YSSAGLWDKATEVRRNMKEQ 750



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 75/147 (51%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W  ++    +  L  EA++ +  M+   ++P+     A+L A   +  +E G+ IH+++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                  +V V   L+N+Y KCG       VFDR+++++ V WNS+I         + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAH 221
           + F  M    ++PS  T + +++AC++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN 211


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/469 (42%), Positives = 304/469 (64%), Gaps = 1/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +S +++D+Y + G   +A K+F +M  +++V+  +++    + GE+  A  +F +M E +
Sbjct: 361 ISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESN 420

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           +V WN MI    Q  +  EA+ L R M  + ++ + VT V + SACG +GAL+  +WI++
Sbjct: 421 LVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYT 480

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YIE + +I +++Q+GTAL++M+S+CG   +A  VF+ +  +DV  W + I   A+ G  K
Sbjct: 481 YIEKN-DIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAK 539

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            A++LF+EM +  +K  D  F+ LL+A +H G V++GR+ F  M+  + + P++ HYGCM
Sbjct: 540 GAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCM 599

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG +EEA+ L+  M I+P+ V+WG+ L ACR H N+       E +        
Sbjct: 600 VDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKV 659

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G +VLLSNIYA+ G W+ VARVR  MKEKG QK  G SSIE+   + EF +GD  H ++ 
Sbjct: 660 GIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENA 719

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
           +I +ML+EIN  +   GYVP T  VL D+ E++K++ L  HSEKLA+A+GLI+T  G  I
Sbjct: 720 QIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPI 779

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++VKNLR+C DCH+  KL+SK  GR+I +RD NR+H F  G CSC D+W
Sbjct: 780 RVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 151/318 (47%), Gaps = 42/318 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L KDL+V+ SL+  YA                            C    G+V   R
Sbjct: 149 VKMGLVKDLFVANSLIHFYA---------------------------AC----GKVDLGR 177

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M E++VV W  +I+GY+   +A EA+ LF  M+   VEPN VT V  +SAC ++ 
Sbjct: 178 KVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLK 237

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            LE G+ + + +     +K N  V  AL++MY KCG +   R +FD  +DK++V++N+++
Sbjct: 238 DLELGKKVCNLM-TELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIM 296

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             Y  HG   + L + +EM +   +P  +T +  ++ACA  G ++ G+         Y  
Sbjct: 297 SNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKS-----SHAYVF 351

Query: 242 EPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
              +E        ++++  + G+ E A K V D       V W +L+      G + L  
Sbjct: 352 RNGLERLDNISNAIIDMYMKCGKREAACK-VFDSMSNKTVVTWNSLIAGLVRDGELELAL 410

Query: 298 KIAEYLISQNLANSGTYV 315
           +I   +   NL +  T +
Sbjct: 411 RIFGEMPESNLVSWNTMI 428



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 157/317 (49%), Gaps = 35/317 (11%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  +L  Y K G++ A R +FD+  +K++V +N ++  Y QHGLA E LV+   ML +  
Sbjct: 261 VNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ 320

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P++VT ++ ++AC Q+G L  G+  H+Y+  +   +++  +  A+I+MY KCG  + A 
Sbjct: 321 RPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLD-NISNAIIDMYMKCGKREAAC 379

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHG--------FG-----------------------KD 192
            VFD +++K VV WNS+I G    G        FG                       ++
Sbjct: 380 KVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEE 439

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+ L  EM    +K   +T +G+ SAC + G ++  +  + T  ++  I   ++    +V
Sbjct: 440 AIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIY-TYIEKNDIHIDMQLGTALV 498

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANS 311
           ++ SR G    A ++  +M+ + D   W   +    + GN     ++ + ++ Q++ A+ 
Sbjct: 499 DMFSRCGDPLNAMRVFENME-KRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADD 557

Query: 312 GTYVLLSNIYAAIGNWD 328
             +V L   ++  G  D
Sbjct: 558 FVFVALLTAFSHGGYVD 574



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 76  NVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           N +I GYA  GL  EA+ ++  M +   + P+  T   +LSAC +I A   G  +H  + 
Sbjct: 90  NTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVV 149

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
               +K ++ V  +LI+ Y+ CG +   R VFD + +++VV W S+I GY++    K+A+
Sbjct: 150 KMGLVK-DLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAV 208

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LF EM  + ++P+ +T +  +SACA    +  G++  N M  E  ++        ++++
Sbjct: 209 CLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMT-ELGVKSNTLVVNALLDM 267

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             + G +  A + + D   + + V++ T++     HG
Sbjct: 268 YMKCGDM-YAVREIFDEFSDKNLVMYNTIMSNYVQHG 303



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 45/204 (22%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ + T+LVD+++R GD L+A ++F  M +R + + T  +   A +G    A  LFD+M 
Sbjct: 490 DMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEML 549

Query: 69  EKDV----------------------------------------VCWNVMIDGYAQHGLA 88
           ++DV                                        V +  M+D   + GL 
Sbjct: 550 KQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLL 609

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            EA  L + M    ++PN+V   + L+AC +   +E   +    I      KV + V   
Sbjct: 610 EEAFDLMKSM---PIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHV--L 664

Query: 149 LINMYSKCGSLKDARLVFDRVNDK 172
           L N+Y+  G   D   V  ++ +K
Sbjct: 665 LSNIYASAGKWNDVARVRLQMKEK 688



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 20/263 (7%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +++AC Q+G  ES  +  +  +     K ++     LI  Y+  G  K+A  ++  +   
Sbjct: 56  LIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIV 115

Query: 173 DVVVWNSMIVGYAMHGFGK-----DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
             +V ++    + +    K     + +Q+   + ++ L         L+   A  G V+ 
Sbjct: 116 MGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDL 175

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLL 284
           GR+ F+ M     +E  V  +  ++N  S     +EA  L  +M    +EP+ V     +
Sbjct: 176 GRKVFDEM-----LERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAI 230

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC    ++ LG+K+   L+++    S T V+  L ++Y   G+   +  VR +  E   
Sbjct: 231 SACAKLKDLELGKKVCN-LMTELGVKSNTLVVNALLDMYMKCGD---MYAVREIFDEFSD 286

Query: 343 QKEPGCSSIELSNKVHEFLAGDL 365
           +     ++I +SN V   LAG++
Sbjct: 287 KNLVMYNTI-MSNYVQHGLAGEV 308


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/448 (45%), Positives = 299/448 (66%), Gaps = 15/448 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEKV 103
           T++  Y++ G++  A  +F  ME++D+V WN MI GY       +AL+L  +M  L  KV
Sbjct: 445 TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKV 504

Query: 104 ---------EPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMY 153
                    +PN +T + +L +C  + AL  G+ IH+Y I+N  N+  +V VG+AL++MY
Sbjct: 505 SKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSALVDMY 562

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +KCG L+ +R VFD++  K+V+ WN +I+ Y MHG G++A+ L   M    +KP+++TFI
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            + +AC+H+G+V+EG R F  MK +Y +EP  +HY C+V+LL RAG+++EAY+L+  M  
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682

Query: 274 EPDSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
           + +    W +LLGA R+H N+ +GE  A+ LI      +  YVLL+NIY++ G WD    
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
           VR  MKE+GV+KEPGCS IE  ++VH+F+AGD  HP+S+++   LE +   ++ EGYVP 
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           T  VLH++ E +K+  L  HSEKLA+AFG+++T PGT I++ KNLRVC DCH   K ISK
Sbjct: 803 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 862

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              R+I++RD  RFH F NGTCSCGDYW
Sbjct: 863 IVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 161/345 (46%), Gaps = 46/345 (13%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + T++  Y K G++A+++VL      +D+V WN ++    Q+    EAL   R M+ E V
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV 298

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+E T  +VL AC  +  L +G+ +H+Y   + ++  N  VG+AL++MY  C  +   R
Sbjct: 299 EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGR 358

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHA 222
            VFD + D+ + +WN+MI GY+ +   K+AL LF  M     L  +  T  G++ AC  +
Sbjct: 359 RVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRS 418

Query: 223 G-----------LVNEG---RRFF-NTMKDEYAIEPKV---------------------- 245
           G           +V  G    RF  NT+ D Y+   K+                      
Sbjct: 419 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 478

Query: 246 ------EHYGCMVNLLSRAGQVE-EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
                 EH+   + LL +   +E +  K    + ++P+S+   T+L +C     +A G++
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 538

Query: 299 IAEYLISQNLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           I  Y I  NLA        L ++YA  G      +V   + +K V
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 48/301 (15%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           SLD++ +V ++LVD+Y                             C  KQ  V + R +F
Sbjct: 333 SLDENSFVGSALVDMY-----------------------------CNCKQ--VLSGRRVF 361

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGAL 123
           D M ++ +  WN MI GY+Q+    EAL+LF  M  +  +  N  T   V+ AC + GA 
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
                IH ++   R +  +  V   L++MYS+ G +  A  +F ++ D+D+V WN+MI G
Sbjct: 422 SRKEAIHGFVVK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480

Query: 184 YAMHGFGKDALQLFNEM-----------CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           Y      +DAL L ++M            R+ LKP+ IT + +L +CA    + +G+   
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540

Query: 233 N-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +K+  A +  V     +V++ ++ G ++ + K V D   + + + W  ++ A  +HG
Sbjct: 541 AYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRK-VFDQIPQKNVITWNVIIMAYGMHG 597

Query: 292 N 292
           N
Sbjct: 598 N 598



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 5/195 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S+    T++  Y K G+  A   +FD + E++ V WN +I           AL  FR ML
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191

Query: 100 AEKVEPNEVTAVAVLSACGQIGALES---GRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            E VEP+  T V+V++AC  +   E    G+ +H+Y    R  ++N  +   L+ MY K 
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY--GLRKGELNSFIINTLVAMYGKL 249

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  ++++      +D+V WN+++     +    +AL+   EM    ++P + T   +L
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309

Query: 217 SACAHAGLVNEGRRF 231
            AC+H  ++  G+  
Sbjct: 310 PACSHLEMLRTGKEL 324



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 104/200 (52%), Gaps = 11/200 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YAK G +  +R +FD + +K+V+ WNV+I  Y  HG   EA+ L R M+ + V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNEVT ++V +AC   G ++ G  I   ++    ++ +      ++++  + G +K+A  
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675

Query: 165 VFDRV--NDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDIT-FIGLLSA 218
           + + +  +      W+S++    +H     G+ A Q       I+L+P+  + ++ L + 
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVASHYVLLANI 730

Query: 219 CAHAGLVNEGRRFFNTMKDE 238
            + AGL ++       MK++
Sbjct: 731 YSSAGLWDKATEVRRNMKEQ 750



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 75/147 (51%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W  ++    +  L  EA++ +  M+   ++P+     A+L A   +  +E G+ IH+++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                  +V V   L+N+Y KCG       VFDR+++++ V WNS+I         + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAH 221
           + F  M    ++PS  T + +++AC++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN 211


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 299/445 (67%), Gaps = 11/445 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKV 103
           + ++  Y    +V + R +FD +  + +  WN MI GYA++GL  +AL+LF  M+    +
Sbjct: 254 SALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 313

Query: 104 EPNEVTAVAVLSAC-GQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKD 161
            PN  T  +V+ AC   + A+  G+ IH+Y I N   +  ++ VG+AL++MY+KCG L  
Sbjct: 314 LPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM--LASDITVGSALVDMYAKCGCLNL 371

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-----RLKPSDITFIGLL 216
           +R VF+ + +K+V+ WN +I+   MHG G++AL+LF  M          KP+++TFI + 
Sbjct: 372 SRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVF 431

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC+H+GL++EG   F  MK ++ +EP  +HY C+V+LL RAGQ+EEAY+LV  M  E D
Sbjct: 432 AACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFD 491

Query: 277 SV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
            V  W +LLGACR+H N+ LGE  A+ L+      +  YVLLSNIY++ G W+    VR 
Sbjct: 492 KVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRK 551

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M++ GV+KEPGCS IE  ++VH+F+AGD+ HP+S++++  LE ++  ++ EGYVP T  
Sbjct: 552 NMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSC 611

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLH++ E +K+N L  HSEKLA+AFG+++T PGT+I++ KNLRVC DCHA  K ISK   
Sbjct: 612 VLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIME 671

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I++RD  RFHHF  GTCSCGDYW
Sbjct: 672 REIIVRDVRRFHHFKEGTCSCGDYW 696



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 127/316 (40%), Gaps = 69/316 (21%)

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           EA+  +  M      P+     AVL A   +  L++G  IH+          +V V   L
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 150 INMYSKCGSL--------------------KDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           +NMY KCG +                     D++ +F+   D+D+V WN+MI  ++    
Sbjct: 135 VNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 194

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAH---------------------------A 222
             +AL  F  M    ++   +T   +L AC+H                           +
Sbjct: 195 FSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGS 254

Query: 223 GLVN---------EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-- 271
            LV+          GRR F     ++ +  ++E +  M++  +R G  E+A  L ++M  
Sbjct: 255 ALVDMYCNCRQVESGRRVF-----DHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 309

Query: 272 --KIEPDSVLWGTLLGACRLH--GNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIGN 326
              + P++    +++ AC +H    IA G++I  Y I   LA+  T    L ++YA  G 
Sbjct: 310 VAGLLPNTTTMASVMPAC-VHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGC 368

Query: 327 WDGVARVRTLMKEKGV 342
            +   RV   M  K V
Sbjct: 369 LNLSRRVFNEMPNKNV 384


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/482 (45%), Positives = 299/482 (62%), Gaps = 8/482 (1%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAK-QGEVAAARV 62
           F+L   L   T L DL   GG     + +     Q S V  + ++  Y+K  G ++  R 
Sbjct: 241 FTLASVLTAFTCLEDL--SGGLQFHGQLIKTGFHQNSHVG-SGLIDLYSKCGGGMSDCRK 297

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHG-LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           +F+++ E D+V WN M+ GY+Q+     +AL  FR+M      PN+ + V V+SAC  + 
Sbjct: 298 VFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLS 357

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +   G+ IHS    S      + V  ALI MYSKCG+L+DAR +FDR+ + + V  NSMI
Sbjct: 358 SPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMI 417

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA HG   ++L LF  M   ++ P+ ITFI +LSACAH G V EG  +FN MK+++ I
Sbjct: 418 AGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNI 477

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP+ EHY CM++LL RAG++ EA  L+  M   P S+ W +LLGACR HGNI L  K A 
Sbjct: 478 EPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAAN 537

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            ++    +N+  YV+LSN+YA+ G W+ VA VR  M+++GV+K+PGCS IE+  ++H F+
Sbjct: 538 QVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFV 597

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL-HDIGEK--QKQNSLEVHSEKLAV 418
           A D  HP  KEIY  LEE++G +K  GYVP  +  L  D G +  +K+  L  HSEKLAV
Sbjct: 598 AEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAV 657

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGLIST+ G  + +VKNLR+C DCH   K IS   GR+I +RD +RFH F  G CSCGD
Sbjct: 658 AFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGD 717

Query: 479 YW 480
           YW
Sbjct: 718 YW 719



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 17/290 (5%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  +    Y S   + LY++ G +  A K F  +   ++ S   ++  YAK+     A 
Sbjct: 35  IKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAH 94

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC---- 117
            LFD + E D+V +N +I  YA  G    AL LF  M    ++ +  T  AV++AC    
Sbjct: 95  QLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDV 154

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVV 176
           G IG L S       +  S      V V  AL+  Y K G L DA+ VF  +   +D V 
Sbjct: 155 GLIGQLHS-------VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVS 207

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM- 235
           WNSMIV Y  H  G  AL LF EM R  L     T   +L+A      ++ G +F   + 
Sbjct: 208 WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267

Query: 236 KDEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           K  +    +  H G  +++L S+ G      + V +   EPD VLW T++
Sbjct: 268 KTGFH---QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMV 314


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 302/480 (62%), Gaps = 33/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK++ D+D+YV ++L+D+YAR                              +Q ++A  
Sbjct: 187 AVKYNWDEDVYVGSALLDMYAR-----------------------------CEQMDMAI- 216

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            ++FD +  K+ V WN +I G+A+       L+ F  M          T  ++ SA  +I
Sbjct: 217 -MVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARI 275

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE GRW+H+++  S   K+   VG  ++ MY+K GS+ DAR VFDR++ +D+V WN+M
Sbjct: 276 GALEQGRWVHAHLIKSGQ-KLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTM 334

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +   A +G GK+A+  F E+ +  ++ + ITF+ +L+AC+H GLV EG+ +F+ MKD Y 
Sbjct: 335 LTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YN 393

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           ++P+++HY   V+LL RAG ++EA   V  M +EP + +WG LLGACR+H N  +G+  A
Sbjct: 394 VQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAA 453

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           +++   +  ++G  VLL NIYA+ G W+  ARVR +MK  GV+KEP CS +++ N VH F
Sbjct: 454 DHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMF 513

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HPKS +IY M EEIN  +K  GYVP T  VL  I E++++  L+ HSEK+A+AF
Sbjct: 514 VADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAF 573

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI+   G SI+I+KN+R+C DCH+ FK +SK   R+I++RD NRFHHF  G+CSCGDYW
Sbjct: 574 ALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 5/249 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  Y K G V+ AR +FD M  +DVV W  +I GYAQ+ +  EA+ L   ML  + 
Sbjct: 98  LNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARF 157

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T  ++L A G  G    G  +H+ +    N   +V VG+AL++MY++C  +  A 
Sbjct: 158 RPNGFTFTSLLKATGACGGCSIGEQMHA-LAVKYNWDEDVYVGSALLDMYARCEQMDMAI 216

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +VFDR+  K+ V WN++I G+A    G+  L  F EM R     +  T+  + SA A  G
Sbjct: 217 MVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIG 276

Query: 224 LVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            + +GR    + +K    +   V +   M+ + +++G + +A K V D   + D V W T
Sbjct: 277 ALEQGRWVHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARK-VFDRMDKRDLVTWNT 333

Query: 283 LLGACRLHG 291
           +L A   +G
Sbjct: 334 MLTALAQYG 342



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           A ++ P      ++++AC Q   L   R IH+++  S  +  +  +  +LI+MY KCG++
Sbjct: 53  AGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRS-CLAGDAFLLNSLIHMYCKCGAV 111

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            DAR VFD++  +DVV W  +I GYA +    +A+ L  +M R R +P+  TF  LL A 
Sbjct: 112 SDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKAT 171

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
              G  + G +  + +  +Y  +  V     ++++ +R  Q++ A  +V D  +  + V 
Sbjct: 172 GACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI-MVFDRLVSKNEVS 229

Query: 280 WGTLLG--ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
           W  L+   A +  G   L  K AE   +   A   TY  + + +A IG
Sbjct: 230 WNALIAGFARKADGETTL-MKFAEMQRNGFGATHFTYSSMFSAFARIG 276


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/474 (44%), Positives = 303/474 (63%), Gaps = 6/474 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSL--VSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V+  L+ LY   G +  A ++F T    SL   S  TM++ Y K G++ AAR +F  M E
Sbjct: 153 VTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPE 212

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           + +V W+ MID   + G  +EAL +F +M+     P+ V   +VL AC  +GALE GRW+
Sbjct: 213 RGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWV 272

Query: 130 HSYI--ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           H ++  E       NV + TAL++MY KCG + +A  VFD V  +DVV+WN+MI G AM+
Sbjct: 273 HRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMN 332

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G GK AL+LF  M  +   P++ TF+ +L AC H G V+EG+  F +M D + IEP+ EH
Sbjct: 333 GHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCD-HGIEPRREH 391

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGC+ +LL RAG +EEA  +++DM +EP +  WG L+ +C +H N+ +GE++ + LI   
Sbjct: 392 YGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELE 451

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             + G YV+L N+YA  G W+    +R +M+E+G +KE G S IE +  VHEF +GD RH
Sbjct: 452 PDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRH 511

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQ 426
           P++++IY +LE++   L+  GYV  T  VL D+  E+ K N+L  HSE+LA+AFG+++T 
Sbjct: 512 PQTRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNTP 571

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I+IVKNLRVC DCH   KL+SK   R+I+MRDR+RFH F  G CSC D+W
Sbjct: 572 RHMPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/472 (43%), Positives = 314/472 (66%), Gaps = 8/472 (1%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +V T+L+D++A+ G++  A  +F  +  QR+ V+   M++ Y + G+++ AR LFD+M +
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRW 128
           +DVV WN MI GYAQ+G +  ++ LF+ M++   ++P+EVT  +VLSACG IGAL+   W
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +   I   +NIK+ +    +LI MYSKCGS+ DA  +F  +  +DVV +N++I G+A +G
Sbjct: 414 VLD-IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANG 472

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            GK+A++L   M    ++P  +T+IG+L+AC+HAGL+NEG+  F +++      P V+HY
Sbjct: 473 HGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHY 527

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL RAG+++EA  L+  M ++P + ++G+LL A R+H  + LGE  A  L     
Sbjct: 528 ACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEP 587

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N G YVLLSNIYA+ G W+ V RVR +MK+ G++K  G S +E   +VH+F  GD  H 
Sbjct: 588 QNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHE 647

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +SK+IY +L E+   +K  G+V      L D+ E++K+  L  HSEKLA+ F L+ ++ G
Sbjct: 648 QSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVG 707

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+I++VKNLR+C DCH   K+ISK  GR+I++RD NRFH F  G CSC DYW
Sbjct: 708 TTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 158/309 (51%), Gaps = 38/309 (12%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           + G+   A  LF  MP R++++ T+M+T YAK G++ +AR  FD+M E+ VV WN M   
Sbjct: 173 KSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSA 232

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           YAQ     EAL LF +ML E + P++ T V  +S+C  IG       I   I+  ++I +
Sbjct: 233 YAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ-KHIVL 291

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVND------------------------------ 171
           N  V TAL++M++K G+L+ AR +FD +                                
Sbjct: 292 NSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNM 351

Query: 172 --KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEG 228
             +DVV WNSMI GYA +G    +++LF EM   + ++P ++T   +LSAC H G +   
Sbjct: 352 PKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLS 411

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG--A 286
               + ++ E  I+  +  +  ++ + S+ G V +A+++   M    D V + TL+   A
Sbjct: 412 YWVLDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFA 469

Query: 287 CRLHGNIAL 295
              HG  A+
Sbjct: 470 ANGHGKEAI 478


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/435 (44%), Positives = 292/435 (67%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++++ YA+ G +  AR  FD + EK+++ +N +ID YA++  + EAL LF  +  + +  
Sbjct: 416 SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T  ++LS    IG +  G  IH+ +  S  +K+N  V  ALI+MYS+CG+++ A  V
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQV 534

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ + D++V+ W S+I G+A HGF   AL+LF++M    ++P+++T+I +LSAC+H GLV
Sbjct: 535 FEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLV 594

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEG + F +M  E+ + P++EHY C+V++L R+G + EA + +  M  + D+++W T LG
Sbjct: 595 NEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLG 654

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+HGN+ LG+  A+ +I Q   +   Y+LLSN+YA+I  WD V+ +R  MKEK + KE
Sbjct: 655 ACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKE 714

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
            GCS +E+ NKVH+F  GD  HPK+ EIY  L+ ++  +K  GYVP    VLHD+ E+QK
Sbjct: 715 AGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQK 774

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSEK+AVAFGLIST     I++ KNLR+C DCH+  K IS  TGR+I++RD NR
Sbjct: 775 EKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANR 834

Query: 466 FHHFVNGTCSCGDYW 480
           FHH  +G CSC +YW
Sbjct: 835 FHHIKDGRCSCNEYW 849



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 154/303 (50%), Gaps = 11/303 (3%)

Query: 47  MLTCYAK---QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG-LANEALVLFRRMLAEK 102
           ++  YAK    G + AAR +FD + + +V  W  MI GY Q G    EAL LFR M+   
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN  T  + L AC  + AL  G  + ++        VN  V  +LI+MY++ G + DA
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC-VANSLISMYARSGRIDDA 430

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R  FD + +K+++ +N++I  YA +   ++AL+LFNE+    +  S  TF  LLS  A  
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASI 490

Query: 223 GLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           G + +G +     +K    +   V     ++++ SR G +E A+++  DM+ + + + W 
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSV--CNALISMYSRCGNIESAFQVFEDME-DRNVISWT 547

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNW-DGVARVRTLMKE 339
           +++     HG      ++   ++ + +  N  TY+ + +  + +G   +G    +++  E
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTE 607

Query: 340 KGV 342
            GV
Sbjct: 608 HGV 610



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 54  QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
           +G++ +A  +F+ M E++ V W +MI    Q G A EA+ LF  M+    EP+  T   V
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGV 277

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVN 170
           +SAC  +  L  G+ +HS       + ++  VG  LINMY+KC   GS+  AR +FD++ 
Sbjct: 278 ISACANMELLLLGQQLHSQAIR-HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 171 DKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           D +V  W +MI GY    G+ ++AL LF  M    + P+  TF   L ACA+   +  G 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + F      +A++       C+ N L    +R+G++++A K   D+  E + + + T++ 
Sbjct: 397 QVFT-----HAVKLGFSSVNCVANSLISMYARSGRIDDARK-AFDILFEKNLISYNTVID 450

Query: 286 A 286
           A
Sbjct: 451 A 451



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQ 84
            L  EKL  +  Q   V+L ++++ Y+K G+   A  +F  M   +D++ W+ M+  +A 
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFAN 145

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + +   AL+ F  M+     PNE    A   AC     +  G  I  ++  +  ++ +V 
Sbjct: 146 NNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVC 205

Query: 145 VGTALINMYSKC-GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
           VG  LI+M+ K  G L  A  VF+++ +++ V W  MI      G+  +A+ LF +M   
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFS 265

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRF 231
             +P   T  G++SACA+  L+  G++ 
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQL 293



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 42/221 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  +  V  +L+ +Y+R G++ SA ++F  M  R+++S T+++T +AK        
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK-------- 555

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG A +AL LF +ML E V PNEVT +AVLSAC  +G
Sbjct: 556 -----------------------HGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVG 592

Query: 122 ALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
            +  G W H   +     +   ++    ++++  + GSL +A    + +  K D +VW +
Sbjct: 593 LVNEG-WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRT 651

Query: 180 MIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +    +HG    GK A ++      I  +P D     LLS
Sbjct: 652 FLGACRVHGNLELGKHAAKMI-----IEQEPHDPAAYILLS 687


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/434 (46%), Positives = 287/434 (66%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G +  +  LF +   ++ V WN +I G+ Q G   +AL LF  ML  +V+  
Sbjct: 179 LMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQAT 238

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EVT  + L AC  + ALE G  IHS    +   K ++ V  ALI+MY+KCGS+KDARLVF
Sbjct: 239 EVTYSSALRACASLAALEPGLQIHSLTVKTTFDK-DIVVTNALIDMYAKCGSIKDARLVF 297

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +N +D V WN+MI GY+MHG G++AL++F++M    +KP  +TF+G+LSACA+AGL++
Sbjct: 298 DLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLD 357

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G+ +F +M  ++ IEP +EHY CMV LL R G +++A KL+ ++  +P  ++W  LLGA
Sbjct: 358 QGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 417

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H +I LG   A+ ++     +  T+VLLSN+YA    WD VA VR  MK KGV+KEP
Sbjct: 418 CVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEP 477

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S IE    VH F  GD  HP+ + I  MLE ++   K  GY+P   +VL D+ +++K+
Sbjct: 478 GLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKE 537

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L VHSE+LA++FG+I T  G+ I+I+KNLR+C DCHA  K ISK   R+I++RD NRF
Sbjct: 538 RLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRF 597

Query: 467 HHFVNGTCSCGDYW 480
           HHF  G CSCGDYW
Sbjct: 598 HHFQEGLCSCGDYW 611



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 137/255 (53%), Gaps = 12/255 (4%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +   +L  Y K   +  A  LFD+M E++ + +  +I GYA+     EA+ LF R L 
Sbjct: 73  LFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR-LH 131

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKC 156
            +V PN+ T  +VL AC  +  L  G  IH ++     IK+    +V V  AL+++Y+KC
Sbjct: 132 REVLPNQFTFASVLQACATMEGLNLGNQIHCHV-----IKIGLHSDVFVSNALMDVYAKC 186

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G ++++  +F     ++ V WN++IVG+   G G+ AL+LF  M   R++ +++T+   L
Sbjct: 187 GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSAL 246

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            ACA    +  G +  +++  +   +  +     ++++ ++ G +++A +LV D+  + D
Sbjct: 247 RACASLAALEPGLQ-IHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQD 304

Query: 277 SVLWGTLLGACRLHG 291
            V W  ++    +HG
Sbjct: 305 EVSWNAMISGYSMHG 319



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 40/221 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK + DKD+ V+ +L+D+YA                               K G +  A
Sbjct: 265 TVKTTFDKDIVVTNALIDMYA-------------------------------KCGSIKDA 293

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R++FD M ++D V WN MI GY+ HGL  EAL +F +M   +V+P+++T V VLSAC   
Sbjct: 294 RLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANA 353

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G L+ G+   + +     I+  ++  T ++ +  + G L  A  + D +     V+VW +
Sbjct: 354 GLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRA 413

Query: 180 MIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +H     G+ + Q   EM     +P D     LLS
Sbjct: 414 LLGACVIHNDIELGRISAQRVLEM-----EPQDKATHVLLS 449


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/439 (45%), Positives = 296/439 (67%), Gaps = 5/439 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT++ CYAK G V+ A  +F  M ++++V W+ MI  YA++    +A+ +F+ M+A   +
Sbjct: 394 TTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDAD 453

Query: 105 --PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             PN +T V+VL AC  + AL  G+ +H+YI   R   + V V  AL+ MY KCG L+  
Sbjct: 454 LVPNSITIVSVLHACAGVNALGQGKVLHAYILR-RGFDLLVSVLNALMAMYMKCGCLETG 512

Query: 163 RLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           R +F+ +   ++VV WNS+I GY MHGFG+++LQ+F EM    + P+ ITF+ +L AC+H
Sbjct: 513 RYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSH 572

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            GLV +G++ F +M  EY + P+ EHY CMV+LL RAG+++EA +L+  M+I+P   +WG
Sbjct: 573 VGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWG 631

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLGACR+HG++   E    +L      N+G YVLL++IYA     + V  ++ L++E  
Sbjct: 632 SLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHA 691

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           ++K PGCS IE+  K++ F++ D ++P+ +E+  ++ E    +K EGYVP T+ VL+DI 
Sbjct: 692 LEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIE 751

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+  L  HSEKLAVAFGLI T  G +I+I KNLR+C DCH+V K ISKFT R+I++R
Sbjct: 752 EEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVR 811

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF NG CSC DYW
Sbjct: 812 DVNRFHHFRNGVCSCRDYW 830



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 120/321 (37%), Gaps = 66/321 (20%)

Query: 36  MPQRSLV---SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
           +P R  V      + L C+A     ++     +D     ++C          HG   +A 
Sbjct: 187 LPHRPFVFRRPRLSRLRCFASLAPASSGASPANDDHLIQMLC---------AHGRLAQAT 237

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
            L + + A    P + T  ++L A  +         +H  +E     + +  + T LI  
Sbjct: 238 ALLQGLPA----PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEA 293

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+   +L  AR VFD    K++ VWN+M+   A+   G++AL    +M R+ +     ++
Sbjct: 294 YAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSY 353

Query: 213 IGLLSAC------------------AHA----------------------GLVNEGRRFF 232
              L AC                  AHA                      G+V+   R F
Sbjct: 354 AHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVF 413

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLS---RAGQVEEAYKLVM--DMKIEPDSVLWGTLLGAC 287
            +M D   +      +  M+   +   R G   + ++ +M  D  + P+S+   ++L AC
Sbjct: 414 TSMPDRNLVS-----WSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHAC 468

Query: 288 RLHGNIALGEKIAEYLISQNL 308
                +  G+ +  Y++ +  
Sbjct: 469 AGVNALGQGKVLHAYILRRGF 489


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/438 (45%), Positives = 296/438 (67%), Gaps = 2/438 (0%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +L  M +C+   G +  AR +F+ M  +  V W+ MI GY + GL+++A+VLFR M    
Sbjct: 176 TLIHMYSCFGA-GFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSG 234

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V P+EVT + VL+A   +GALE  RW+  ++E    I  +V +  ALI+  +KCG +  A
Sbjct: 235 VRPDEVTVIGVLAAAADLGALELTRWVGRFVERE-GIGKSVTLCNALIDTLAKCGDVDGA 293

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ + ++ VV W S+I   AM G GK+A+ +F EM  + + P D+ FIG+L+AC+HA
Sbjct: 294 VAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHA 353

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+V+EGR +F++MK EY IEPK+EHYGCMV++  RAG VE+  + V  M ++P+ ++W T
Sbjct: 354 GMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRT 413

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           L+ ACR HG + LGE I   L+++  A+   YV+LSN+YA    W   + +R  M ++G+
Sbjct: 414 LVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGI 473

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCS +EL  +VHEF+AGD  HP+ KEIY M+EE++  L+  G++  T  VL D+ E
Sbjct: 474 KKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDE 533

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+ +L+ HSEKLA+AF L+ T PGT +++VKNLRVC DCHA  K IS+   R+I++RD
Sbjct: 534 EDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRD 593

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R+RFH F +G+CSC D+W
Sbjct: 594 RSRFHRFKDGSCSCKDFW 611



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           +S+     ++   AK G+V  A  +F+ MEE+ VV W  +ID  A  G   EA+ +F  M
Sbjct: 272 KSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEM 331

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            A  V P++V  + VL+AC   G ++ GR     ++    I+  ++    +++M+ + G 
Sbjct: 332 KAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGM 391

Query: 159 LKDARLVFDRVND--KDVVVWNSMIVGYAMHG 188
           ++   L F R      + ++W +++     HG
Sbjct: 392 VEQG-LEFVRAMPMKPNPIIWRTLVAACRAHG 422


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/472 (43%), Positives = 314/472 (66%), Gaps = 8/472 (1%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +V T+L+D++A+ G++  A  +F  +  QR+ V+   M++ Y + G+++ AR LFD+M +
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRW 128
           +DVV WN MI GYAQ+G +  ++ LF+ M++   ++P+EVT  +VLSACG IGAL+   W
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +   I   +NIK+ +    +LI MYSKCGS+ DA  +F  +  +DVV +N++I G+A +G
Sbjct: 414 VLD-IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANG 472

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            GK+A++L   M    ++P  +T+IG+L+AC+HAGL+NEG+  F +++      P V+HY
Sbjct: 473 HGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHY 527

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL RAG+++EA  L+  M ++P + ++G+LL A R+H  + LGE  A  L     
Sbjct: 528 ACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEP 587

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            N G YVLLSNIYA+ G W+ V RVR +MK+ G++K  G S +E   +VH+F  GD  H 
Sbjct: 588 QNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHE 647

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +SK+IY +L E+   +K  G+V      L D+ E++K+  L  HSEKLA+ F L+ ++ G
Sbjct: 648 QSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVG 707

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+I++VKNLR+C DCH   K+ISK  GR+I++RD NRFH F  G CSC DYW
Sbjct: 708 TTIRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 158/309 (51%), Gaps = 38/309 (12%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           + G+   A  LF  MP R++++ T+M+T YAK G++ +AR  FD+M E+ VV WN M   
Sbjct: 173 KSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSA 232

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           YAQ     EAL LF +ML E + P++ T V  +S+C  IG       I   I+  ++I +
Sbjct: 233 YAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ-KHIVL 291

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVND------------------------------ 171
           N  V TAL++M++K G+L+ AR +FD +                                
Sbjct: 292 NSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNM 351

Query: 172 --KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEG 228
             +DVV WNSMI GYA +G    +++LF EM   + ++P ++T   +LSAC H G +   
Sbjct: 352 PKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLS 411

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG--A 286
               + ++ E  I+  +  +  ++ + S+ G V +A+++   M    D V + TL+   A
Sbjct: 412 YWVLDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFA 469

Query: 287 CRLHGNIAL 295
              HG  A+
Sbjct: 470 ANGHGKEAI 478


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/476 (43%), Positives = 307/476 (64%), Gaps = 8/476 (1%)

Query: 11  YVSTSLVDLYA-----RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           Y  TS++   A     R G ++ +    +     S V    ++T YAK      AR +FD
Sbjct: 109 YTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQ-AALVTFYAKSCTPRVARKVFD 167

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
           +M ++ ++ WN MI GY Q+GLA+EA+ +F +M     EP+  T V+VLSAC Q+G+L+ 
Sbjct: 168 EMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDL 227

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G W+H  I  +  I++NV + T+L+NM+S+CG +  AR VFD +N+ +VV W +MI GY 
Sbjct: 228 GCWLHECIVGT-GIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYG 286

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           MHG+G +A+++F+ M    + P+ +T++ +LSACAHAGL+NEGR  F +MK EY + P V
Sbjct: 287 MHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGV 346

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           EH+ CMV++  R G + EAY+ V  +  E     +W  +LGAC++H N  LG ++AE LI
Sbjct: 347 EHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLI 406

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
           S    N G YVLLSN+YA  G  D V  VR +M ++G++K+ G S+I++ N+ + F  GD
Sbjct: 407 SAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGD 466

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP++ EIY  L+E+    K  GY P  +  +H++ E++++ +L  HSEKLAVAFGL+ 
Sbjct: 467 KSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMK 526

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T  G +++IVKNLR+C DCH+  K IS    R+I++RD+ RFHHF  G+CSC DYW
Sbjct: 527 TCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 3/260 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L  T   RS   LT +LT     G +A  R LF  + + D   +N +I   +  G + +A
Sbjct: 33  LVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDA 92

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           +  +RRML  ++ P+  T  +V+ AC  +  L  G  +HS++  S     N  V  AL+ 
Sbjct: 93  VFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVS-GYASNSFVQAALVT 151

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
            Y+K  + + AR VFD +  + ++ WNSMI GY  +G   +A+++FN+M     +P   T
Sbjct: 152 FYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSAT 211

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F+ +LSAC+  G ++ G      +     I   V     +VN+ SR G V  A + V D 
Sbjct: 212 FVSVLSACSQLGSLDLGCWLHECIVGT-GIRMNVVLATSLVNMFSRCGDVGRA-RAVFDS 269

Query: 272 KIEPDSVLWGTLLGACRLHG 291
             E + V W  ++    +HG
Sbjct: 270 MNEGNVVSWTAMISGYGMHG 289



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 33/181 (18%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ ++TSLV++++R GDV  A  +F +M + ++VS T M                     
Sbjct: 243 NVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAM--------------------- 281

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                     I GY  HG   EA+ +F RM A  V PN VT VAVLSAC   G +  GR 
Sbjct: 282 ----------ISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRL 331

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV--VWNSMIVGYAM 186
           + + ++    +   V+    +++M+ + G L +A      ++ +++V  VW +M+    M
Sbjct: 332 VFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKM 391

Query: 187 H 187
           H
Sbjct: 392 H 392


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/449 (45%), Positives = 299/449 (66%), Gaps = 15/449 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK 102
            T++  Y++ G++  A  +F  ME++D+V WN MI GY       +AL+L  +M  L  K
Sbjct: 357 NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERK 416

Query: 103 V---------EPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINM 152
           V         +PN +T + +L +C  + AL  G+ IH+Y I+N  N+  +V VG+AL++M
Sbjct: 417 VSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSALVDM 474

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+KCG L+ +R VFD++  K+V+ WN +I+ Y MHG G++A+ L   M    +KP+++TF
Sbjct: 475 YAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTF 534

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           I + +AC+H+G+V+EG R F  MK +Y +EP  +HY C+V+LL RAG+++EAY+L+  M 
Sbjct: 535 ISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 594

Query: 273 IEPDSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
            + +    W +LLGA R+H N+ +GE  A+ LI      +  YVLL+NIY++ G WD   
Sbjct: 595 RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKAT 654

Query: 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP 391
            VR  MKE+GV+KEPGCS IE  ++VH+F+AGD  HP+S+++   LE +   ++ EGYVP
Sbjct: 655 EVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 714

Query: 392 QTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLIS 451
            T  VLH++ E +K+  L  HSEKLA+AFG+++T PGT I++ KNLRVC DCH   K IS
Sbjct: 715 DTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFIS 774

Query: 452 KFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           K   R+I++RD  RFH F NGTCSCGDYW
Sbjct: 775 KIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 46/328 (14%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + T++  Y K G++A+++VL      +D+V WN ++    Q+    EAL   R M+ E V
Sbjct: 152 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV 211

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+E T  +VL AC  +  L +G+ +H+Y   + ++  N  VG+AL++MY  C  +   R
Sbjct: 212 EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGR 271

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHA 222
            VFD + D+ + +WN+MI GY+ +   K+AL LF  M     L  +  T  G++ AC  +
Sbjct: 272 RVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRS 331

Query: 223 G-----------LVNEG---RRFF-NTMKDEYAIEPKV---------------------- 245
           G           +V  G    RF  NT+ D Y+   K+                      
Sbjct: 332 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 391

Query: 246 ------EHYGCMVNLLSRAGQVE-EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
                 EH+   + LL +   +E +  K    + ++P+S+   T+L +C     +A G++
Sbjct: 392 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 451

Query: 299 IAEYLISQNLANS-GTYVLLSNIYAAIG 325
           I  Y I  NLA        L ++YA  G
Sbjct: 452 IHAYAIKNNLATDVAVGSALVDMYAKCG 479



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 48/301 (15%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           SLD++ +V ++LVD+Y                             C  KQ  V + R +F
Sbjct: 246 SLDENSFVGSALVDMY-----------------------------CNCKQ--VLSGRRVF 274

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGAL 123
           D M ++ +  WN MI GY+Q+    EAL+LF  M  +  +  N  T   V+ AC + GA 
Sbjct: 275 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 334

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
                IH ++   R +  +  V   L++MYS+ G +  A  +F ++ D+D+V WN+MI G
Sbjct: 335 SRKEAIHGFVVK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 393

Query: 184 YAMHGFGKDALQLFNEM-----------CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           Y      +DAL L ++M            R+ LKP+ IT + +L +CA    + +G+   
Sbjct: 394 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 453

Query: 233 N-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +K+  A +  V     +V++ ++ G ++ + K V D   + + + W  ++ A  +HG
Sbjct: 454 AYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRK-VFDQIPQKNVITWNVIIMAYGMHG 510

Query: 292 N 292
           N
Sbjct: 511 N 511



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 5/195 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S+    T++  Y K G+  A   +FD + E++ V WN +I           AL  FR ML
Sbjct: 45  SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 104

Query: 100 AEKVEPNEVTAVAVLSACGQIGALES---GRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            E VEP+  T V+V++AC  +   E    G+ +H+Y    R  ++N  +   L+ MY K 
Sbjct: 105 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY--GLRKGELNSFIINTLVAMYGKL 162

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  ++++      +D+V WN+++     +    +AL+   EM    ++P + T   +L
Sbjct: 163 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 222

Query: 217 SACAHAGLVNEGRRF 231
            AC+H  ++  G+  
Sbjct: 223 PACSHLEMLRTGKEL 237



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 65/124 (52%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   ++P+     A+L A   +  +E G+ IH+++        +V V   L+N+Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
                  VFDR+++++ V WNS+I         + AL+ F  M    ++PS  T + +++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 218 ACAH 221
           AC++
Sbjct: 121 ACSN 124


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/431 (46%), Positives = 288/431 (66%), Gaps = 2/431 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVT 109
           YAK G V +AR +F+ +   DV+ WN +I GYAQ+G A+EA+ ++  M  E ++  N+ T
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
            V+VL AC Q GAL  G  +H  +  +  + ++V V T+L +MY KCG L+DA  +F ++
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
              + V WN++I  +  HG G+ A+ LF EM    +KP  ITF+ LLSAC+H+GLV+EG+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
             F  M+ +Y I P ++HYGCMV++  RAGQ+E A K +  M ++PD+ +WG LL ACR+
Sbjct: 573 WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 632

Query: 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           HGN+ LG+  +E+L      + G +VLLSN+YA+ G W+GV  +R++   KG++K PG S
Sbjct: 633 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 692

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
           S+E+ NKV  F  G+  HP  +E+Y  L  +   LK  GYVP  + VL D+ + +K++ L
Sbjct: 693 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHIL 752

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSE+LA+AF LI+T   T+I+I KNLRVC DCH+V K ISK T R+I++RD NRFHHF
Sbjct: 753 MSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 812

Query: 470 VNGTCSCGDYW 480
            NG CSCGDYW
Sbjct: 813 KNGVCSCGDYW 823



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 14/275 (5%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y++   V  AR+LFD+M  +D+  WN MI GY Q G A EAL L   + A     
Sbjct: 190 SLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM---- 245

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT V++LSAC + G    G  IHSY      ++  + V   LI++Y++ G L+D + V
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR+  +D++ WNS+I  Y ++     A+ LF EM   R++P  +T I L S  +  G +
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364

Query: 226 NEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              R     T++  + +E  +     +V + ++ G V+ A + V +     D + W T++
Sbjct: 365 RACRSVQGFTLRKGWFLE-DITIGNAVVVMYAKLGLVDSA-RAVFNWLPNTDVISWNTII 422

Query: 285 GACRLHGNIALGEKIAEYLISQN----LANSGTYV 315
                +G  +  E I  Y I +      AN GT+V
Sbjct: 423 SGYAQNGFAS--EAIEMYNIMEEEGEIAANQGTWV 455



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 146/305 (47%), Gaps = 49/305 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K  L+ +L+VS  L+DLYA  G +   +K+F                           
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVF--------------------------- 305

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
               D M  +D++ WN +I  Y  +     A+ LF+ M   +++P+ +T +++ S   Q+
Sbjct: 306 ----DRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G + + R +  +         ++ +G A++ MY+K G +  AR VF+ + + DV+ WN++
Sbjct: 362 GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTI 421

Query: 181 IVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTM---- 235
           I GYA +GF  +A++++N M     +  +  T++ +L AC+ AG + +G +    +    
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481

Query: 236 --KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
              D + +    + YG       + G++E+A  L   +    +SV W TL+     HG+ 
Sbjct: 482 LYLDVFVVTSLADMYG-------KCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH- 532

Query: 294 ALGEK 298
             GEK
Sbjct: 533 --GEK 535



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 22/300 (7%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR-MLAEKVEPN 106
           L CY   G VA AR  FD ++ +DV  WN+MI GY + G ++E +  F   ML+  + P+
Sbjct: 95  LYCYL--GNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPD 152

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +VL AC  +     G  IH  +        +V V  +LI++YS+  ++ +AR++F
Sbjct: 153 YRTFPSVLKACRTV---IDGNKIHC-LALKFGFMWDVYVAASLIHLYSRYKAVGNARILF 208

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLV 225
           D +  +D+  WN+MI GY   G  K+AL L N      L+  D +T + LLSAC  AG  
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG-----LRAMDSVTVVSLLSACTEAGDF 263

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           N G    ++   ++ +E ++     +++L +  G++ +  K V D     D + W +++ 
Sbjct: 264 NRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQK-VFDRMYVRDLISWNSIIK 321

Query: 286 ACRLHGN----IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           A  L+      I+L     E  +S+   +  T + L++I + +G+      V+     KG
Sbjct: 322 AYELNEQPLRAISL---FQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 40/220 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  D++V TSL D+Y + G +  A  LF  +P+ + V   T++ C+          
Sbjct: 478 LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH---------- 527

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                              G+  HG   +A++LF+ ML E V+P+ +T V +LSAC   G
Sbjct: 528 -------------------GF--HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G+W    ++    I  +++    +++MY + G L+ A + +       D  +W ++
Sbjct: 567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626

Query: 181 IVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +HG    GK A +   E     ++P  + +  LLS
Sbjct: 627 LSACRVHGNVDLGKIASEHLFE-----VEPEHVGYHVLLS 661



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 39/236 (16%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+S + +H+ +  S+ I+ NV +   L+N+Y   G++  AR  FD + ++DV  WN MI 
Sbjct: 67  LQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125

Query: 183 GYAMHGFGKDALQLFN-EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF------FNTM 235
           GY   G   + ++ F+  M    L P   TF  +L AC     V +G +       F  M
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFM 182

Query: 236 KDEYAIEPKVEHYG------------------------CMVNLLSRAGQVEEAYKLVMDM 271
            D Y     +  Y                          M++   ++G  +EA  L   +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIG 325
           +   DSV   +LL AC   G+   G  I  Y I   L  S  +V   L ++YA  G
Sbjct: 243 R-AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL-ESELFVSNKLIDLYAEFG 296


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/472 (40%), Positives = 306/472 (64%), Gaps = 1/472 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D   S  L+++YA+ G++L+++++F+ M  +  VS  +M+  Y + G++  +  +F++M+
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMK 315

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +D++ WN +I         N  L +  RM  E V P+  T +++L  C  + A   G+ 
Sbjct: 316 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 375

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  I     ++ +V VG  LI MYSKCGSL+++  VF  +  KDVV W ++I    M+G
Sbjct: 376 IHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYG 434

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            GK A++ F EM    + P  + F+ ++ AC+H+GLV EG  +F+ MK +Y IEP++EHY
Sbjct: 435 EGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHY 494

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            C+V+LLSR+  +++A   ++ M ++PDS +WG LL ACR+ G+  + E+++E +I  N 
Sbjct: 495 ACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNP 554

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            ++G YVL+SNIYAA+G WD V  +R  +K +G++K+PGCS +E+ NKV+ F  G     
Sbjct: 555 DDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFE 614

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           + +E+  +L  + G +  EGY+   Q VLHDI E +K++ L  HSE+LA+AFGL++T+PG
Sbjct: 615 QFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPG 674

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T ++++KNLRVC DCH V K ISK   R++++RD NRFH F +G CSCGDYW
Sbjct: 675 TPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 86/348 (24%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DLY+  +L+D+Y R  D+                                 AR +F++M 
Sbjct: 149 DLYIGNALIDMYCRFNDL-------------------------------DKARKVFEEMP 177

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRM------LAEKVEPNEVTAVAVLSACGQIGA 122
            +DVV WN +I GY  +G  NEAL ++ +       +  + +P+ +T  ++L ACG +G 
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGD 237

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           LE G+++H Y+  S   + +      LINMY+KCG+L  ++ VF  +  KD V WNSMI 
Sbjct: 238 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 296

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            Y  +G   D+L++F  M     K  D IT+  ++++C H+   N G R  + M+ E  +
Sbjct: 297 VYIQNGKMGDSLKVFENM-----KARDIITWNTIIASCVHSEDCNLGLRMISRMRTE-GV 350

Query: 242 EPKV--------------------EHYGC---------------MVNLLSRAGQVEEAYK 266
            P +                    E +GC               ++ + S+ G +  +++
Sbjct: 351 TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQ 410

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGN-----IALGEKIAEYLISQNLA 309
           +   MK + D V W  L+ AC ++G       A GE  A  ++  ++A
Sbjct: 411 VFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 457



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 9/251 (3%)

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +V  WN +I     +GL +EAL L+      +++P+  T  +V++AC  +   E  + IH
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             + +      ++ +G ALI+MY +   L  AR VF+ +  +DVV WNS+I GY  +G+ 
Sbjct: 139 DRVLD-MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 197

Query: 191 KDALQLFNEMCRI------RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            +AL+++ +  ++      + KP  +T   +L AC H G +  G+   + M      E  
Sbjct: 198 NEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECD 256

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
                 ++N+ ++ G +  + ++   MK + DSV W +++     +G +    K+ E + 
Sbjct: 257 TTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGKMGDSLKVFENMK 315

Query: 305 SQNLANSGTYV 315
           ++++    T +
Sbjct: 316 ARDIITWNTII 326


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/514 (40%), Positives = 308/514 (59%), Gaps = 41/514 (7%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ---------- 54
           +L  +++V  +L DLYAR G++  A +LF  M  R++V+   M++ Y K           
Sbjct: 185 NLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLF 244

Query: 55  -------------------------GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
                                    G +  AR +F ++ EKD VCW +MI G AQ+G   
Sbjct: 245 HEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEE 304

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGT 147
           +AL+LF  ML E   P+  T  +V+S+C ++ +L  G+ +H  +++     +  ++ V +
Sbjct: 305 DALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFL---MGVNDDLLVSS 361

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL++MY KCG  +DA  +F  +  ++VV WNSMI GYA++G   +AL L+  M    LKP
Sbjct: 362 ALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKP 421

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
             +TF+G+LSAC HAGLV EG+ +F +M D++ +EP  +HY CMVNL  R+G +++A  L
Sbjct: 422 DSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDL 481

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
           +  M  EP+S++W T+L  C + G+I  GE  A  LI  N  N+  Y++LSN+YAA G W
Sbjct: 482 ISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRW 541

Query: 328 DGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE 387
             VA +R+LMK K V+K    S IE+ N+VH+F+A D  HP +K I++ L  +   L+  
Sbjct: 542 KDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEA 601

Query: 388 GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG-TSIKIVKNLRVCPDCHAV 446
           G+ P T +VLHD GE +K  S+  HSEKLA+A+GLI    G T I+I+KN+R C DCH  
Sbjct: 602 GFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIF 661

Query: 447 FKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            K +S  T R +++RD NRFHHFV G CSC DYW
Sbjct: 662 MKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 162/297 (54%), Gaps = 14/297 (4%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++   L++LYA+ G++  A KLF  M QR   S   ML+ YAK G V   RV+FD+M 
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +D V +N +I G+A +G    AL +F RM  E ++P E T V+VL+AC Q+  L  G+ 
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  I    N+  NV V  AL ++Y++CG +  AR +FDR+  ++VV WN MI GY  + 
Sbjct: 177 IHGRIIIC-NLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNR 235

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +  + LF+EM    LKP  +T   +L A   AG ++E R+ F  ++++  +   +   
Sbjct: 236 QPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIV 295

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACR-----LHGNIALGE 297
           GC  N     G+ E+A  L  +M +E   PD     +++ +C       HG +  G+
Sbjct: 296 GCAQN-----GKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGK 347


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/514 (40%), Positives = 309/514 (60%), Gaps = 41/514 (7%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTC------------ 50
           D+ +   TS++  YAR G    A KLF  M +  +     ++T +L C            
Sbjct: 208 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 267

Query: 51  -----------------------YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
                                  YAK G +  A ++F +M  KD++ WN +I GY+++  
Sbjct: 268 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 327

Query: 88  ANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
           ANEAL LF  +L EK   P+E T   VL AC  + A + GR IH YI  +     +  V 
Sbjct: 328 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-DRHVA 386

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
            +L++MY+KCG+L  A ++FD +  KD+V W  MI GY MHGFGK+A+ LFN+M +  ++
Sbjct: 387 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 446

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
             +I+F+ LL AC+H+GLV+EG RFFN M+ E  IEP VEHY C+V++L+R G + +AY+
Sbjct: 447 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 506

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326
            + +M I PD+ +WG LL  CR+H ++ L EK+AE +      N+G YVL++NIYA    
Sbjct: 507 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 566

Query: 327 WDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386
           W+ V R+R  + ++G++K PGCS IE+  +V+ F+AGD  +P+++ I   L ++   +  
Sbjct: 567 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 626

Query: 387 EGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAV 446
           EGY P T+  L D  E +K+ +L  HSEKLA+A G+IS+  G  I++ KNLRVC DCH +
Sbjct: 627 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 686

Query: 447 FKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            K +SK T R+I++RD NRFH F +G CSC  +W
Sbjct: 687 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 149/276 (53%), Gaps = 5/276 (1%)

Query: 12  VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           VS S   L +  GG+ L    L +   +R+ V   +++  Y K   V +AR +FD+M E+
Sbjct: 50  VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTER 108

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           DV+ WN +I+GY  +GLA + L +F +ML   +E +  T V+V + C     +  GR +H
Sbjct: 109 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 168

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
           S I          +    L++MYSKCG L  A+ VF  ++D+ VV + SMI GYA  G  
Sbjct: 169 S-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA 227

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A++LF EM    + P   T   +L+ CA   L++EG+R    +K E  +   +     
Sbjct: 228 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNA 286

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           ++++ ++ G ++EA  +  +M+++ D + W T++G 
Sbjct: 287 LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 321



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 147/316 (46%), Gaps = 41/316 (12%)

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           FD+++ +  + WN++++  A+ G  + ++ LF++M++  VE +  T   V  +   + ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
             G  +H +I  S   + N  VG +L+  Y K   +  AR VFD + ++DV+ WNS+I G
Sbjct: 61  HGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR-------------- 229
           Y  +G  +  L +F +M    ++    T + + + CA + L++ GR              
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 230 -RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK- 272
            RF NT+ D Y+                +  V  Y  M+   +R G   EA KL  +M+ 
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 273 --IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGN 326
             I PD      +L  C  +  +  G+++ E++   +L   G  + +SN    +YA  G+
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL---GFDIFVSNALMDMYAKCGS 296

Query: 327 WDGVARVRTLMKEKGV 342
                 V + M+ K +
Sbjct: 297 MQEAELVFSEMRVKDI 312


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/472 (45%), Positives = 294/472 (62%), Gaps = 4/472 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLV--SLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V  +L+ +Y+R G V +A +L      + L     T +L  Y K G++  A+ +F  +++
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKD 375

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +DVV W  MI GY QHG   EA+ LFR M+     PN  T  A+LS    + +L  G+ I
Sbjct: 376 RDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQI 435

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           H     S  I  +V V  ALI MY+K G++  A   FD +  ++D V W SMI+  A HG
Sbjct: 436 HGSAVKSGEI-YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHG 494

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             ++AL+LF  M    L+P  IT++G+ SAC HAGLVN+GR++F+ MKD   I P + HY
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+L  RAG ++EA + +  M IEPD V WG+LL ACR+H NI LG+  AE L+    
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEP 614

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            NSG Y  L+N+Y+A G W+  A++R  MK+  V+KE G S IE+ +KVH F   D  HP
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHP 674

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +  EIYM +++I   +K  GYVP T  VLHD+ E+ K+  L  HSEKLA+AFGLIST   
Sbjct: 675 EKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDK 734

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T+++I+KNLRVC DCH   K ISK  GR+I++RD  RFHHF +G CSC DYW
Sbjct: 735 TTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 166/334 (49%), Gaps = 50/334 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L   +Y+  +L+++Y++ G  L A KLF  MP R+  S  T+L+ Y+K+G++ +  
Sbjct: 41  IKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTC 100

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             FD + ++D V W  MI GY   G  ++A+ +   M+ E +EP + T   VL++     
Sbjct: 101 EFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATR 160

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------- 168
            +E+G+ +HS+I     ++ NV V  +L+NMY+KCG    A+ VFDR             
Sbjct: 161 CMETGKKVHSFIVK-LGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219

Query: 169 ------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD 209
                             + ++D+V WNSMI G+   G+   AL +F++M R   L P  
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279

Query: 210 ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            T   +LSACA+   +  G++   + +   + I   V     ++++ SR G VE A +L+
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLI 337

Query: 269 -----MDMKIEPDSVLWGTLLGACRLHGNIALGE 297
                 D+KIE  + L         L G I LG+
Sbjct: 338 EQRGTKDLKIEGFTAL---------LDGYIKLGD 362


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/514 (40%), Positives = 309/514 (60%), Gaps = 41/514 (7%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTC------------ 50
           D+ +   TS++  YAR G    A KLF  M +  +     ++T +L C            
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418

Query: 51  -----------------------YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
                                  YAK G +  A ++F +M  KD++ WN +I GY+++  
Sbjct: 419 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 478

Query: 88  ANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
           ANEAL LF  +L EK   P+E T   VL AC  + A + GR IH YI  +     +  V 
Sbjct: 479 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-DRHVA 537

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
            +L++MY+KCG+L  A ++FD +  KD+V W  MI GY MHGFGK+A+ LFN+M +  ++
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
             +I+F+ LL AC+H+GLV+EG RFFN M+ E  IEP VEHY C+V++L+R G + +AY+
Sbjct: 598 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 657

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326
            + +M I PD+ +WG LL  CR+H ++ L EK+AE +      N+G YVL++NIYA    
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 717

Query: 327 WDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386
           W+ V R+R  + ++G++K PGCS IE+  +V+ F+AGD  +P+++ I   L ++   +  
Sbjct: 718 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777

Query: 387 EGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAV 446
           EGY P T+  L D  E +K+ +L  HSEKLA+A G+IS+  G  I++ KNLRVC DCH +
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837

Query: 447 FKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            K +SK T R+I++RD NRFH F +G CSC  +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 149/276 (53%), Gaps = 5/276 (1%)

Query: 12  VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           VS S   L +  GG+ L    L +   +R+ V   +++  Y K   V +AR +FD+M E+
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTER 259

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           DV+ WN +I+GY  +GLA + L +F +ML   +E +  T V+V + C     +  GR +H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
           S I          +    L++MYSKCG L  A+ VF  ++D+ VV + SMI GYA  G  
Sbjct: 320 S-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA 378

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A++LF EM    + P   T   +L+ CA   L++EG+R    +K E  +   +     
Sbjct: 379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNA 437

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           ++++ ++ G ++EA  +  +M+++ D + W T++G 
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 153/329 (46%), Gaps = 41/329 (12%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y   G++  A  +FD+++ +  + WN++++  A+ G  + ++ LF++M++  VE +  T 
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             V  +   + ++  G  +H +I  S   + N  VG +L+  Y K   +  AR VFD + 
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT 257

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR- 229
           ++DV+ WNS+I GY  +G  +  L +F +M    ++    T + + + CA + L++ GR 
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 230 --------------RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQ 260
                         RF NT+ D Y+                +  V  Y  M+   +R G 
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377

Query: 261 VEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317
             EA KL  +M+   I PD      +L  C  +  +  G+++ E++   +L   G  + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL---GFDIFV 434

Query: 318 SN----IYAAIGNWDGVARVRTLMKEKGV 342
           SN    +YA  G+      V + M+ K +
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKDI 463



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 7/217 (3%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++ V   N  +  + + G    A+ L    ++ K + +  T  +VL  C    +L+ G+ 
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           + ++I  +    ++  +G+ L  MY+ CG LK+A  VFD V  +  + WN ++   A  G
Sbjct: 116 VDNFIRGN-GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEH 247
               ++ LF +M    ++    TF  +  + +    V+ G +     +K  +     V +
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN 234

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              +V    +  +V+ A K V D   E D + W +++
Sbjct: 235 --SLVAFYLKNQRVDSARK-VFDEMTERDVISWNSII 268


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 302/480 (62%), Gaps = 33/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK++ D+D+YV ++L+D+YAR                              +Q ++A  
Sbjct: 84  AVKYNWDEDVYVGSALLDMYAR-----------------------------CEQMDMAI- 113

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            ++FD +  K+ V WN +I G+A+       L+ F  M          T  ++ SA  +I
Sbjct: 114 -MVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARI 172

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           GALE GRW+H+++  S   K+   VG  ++ MY+K GS+ DAR VFDR++ +D+V WN+M
Sbjct: 173 GALEQGRWVHAHLIKSGQ-KLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTM 231

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +   A +G GK+A+  F E+ +  ++ + ITF+ +L+AC+H GLV EG+ +F+ MKD Y 
Sbjct: 232 LTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YN 290

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           ++P+++HY   V+LL RAG ++EA   V  M +EP + +WG LLGACR+H N  +G+  A
Sbjct: 291 VQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAA 350

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           +++   +  ++G  VLL NIYA+ G W+  ARVR +MK  GV+KEP CS +++ N VH F
Sbjct: 351 DHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMF 410

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HPKS +IY M EEIN  +K  GYVP T  VL  I E++++  L+ HSEK+A+AF
Sbjct: 411 VADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAF 470

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI+   G SI+I+KN+R+C DCH+ FK +SK   R+I++RD NRFHHF  G+CSCGDYW
Sbjct: 471 ALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 5/242 (2%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G V+ AR +FD M  +DVV W  +I GYAQ+ +  EA+ L   ML  +  PN  T 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            ++L A G  G    G  +H+ +    N   +V VG+AL++MY++C  +  A +VFDR+ 
Sbjct: 62  TSLLKATGACGGCSIGEQMHA-LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            K+ V WN++I G+A    G+  L  F EM R     +  T+  + SA A  G + +GR 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 231 FF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
              + +K    +   V +   M+ + +++G + +A K V D   + D V W T+L A   
Sbjct: 181 VHAHLIKSGQKLTAFVGN--TMLGMYAKSGSMVDARK-VFDRMDKRDLVTWNTMLTALAQ 237

Query: 290 HG 291
           +G
Sbjct: 238 YG 239



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY KCG++ DAR VFD++  +DVV W  +I GYA +    +A+ L  +M R R +P+  T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F  LL A    G  + G +  + +  +Y  +  V     ++++ +R  Q++ A  +V D 
Sbjct: 61  FTSLLKATGACGGCSIGEQ-MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAI-MVFDR 118

Query: 272 KIEPDSVLWGTLLG--ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
            +  + V W  L+   A +  G   L  K AE   +   A   TY  + + +A IG
Sbjct: 119 LVSKNEVSWNALIAGFARKADGETTL-MKFAEMQRNGFGATHFTYSSMFSAFARIG 173


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/480 (45%), Positives = 295/480 (61%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  LD +++VS +L+D+YA+ G + ++ +LF+  P  + VS                 
Sbjct: 373 VVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS----------------- 415

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                         WN +I GY Q G   +AL+LF+ ML  +V+  EVT  +VL AC  I
Sbjct: 416 --------------WNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGI 461

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            ALE G  IHS    +   K N  VG ALI+MY+KCG++KDARLVFD + + D V WN+M
Sbjct: 462 AALEPGSQIHSLSVKTIYDK-NTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAM 520

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GY++HG   +AL+ F  M     KP  +TF+G+LSAC++AGL++ G+ +F +M +EY 
Sbjct: 521 ISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYD 580

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP  EHY CMV LL R+G +++A KLV ++  EP  ++W  LL AC +H ++ LG   A
Sbjct: 581 IEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISA 640

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + ++     +  T+VLLSNIYA    W  VA +RT MK KG++KEPG S IE   +VH F
Sbjct: 641 QRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYF 700

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             GD  HP +K I  MLE +N   + EGYVP    VL D+ +  K+  L VHSE+LA+A+
Sbjct: 701 SVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAY 760

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI T   + ++I+KNLR+C DCHA  KLISK   R I++RD NRFHHF  G CSCGDYW
Sbjct: 761 GLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 141/260 (54%), Gaps = 5/260 (1%)

Query: 33  FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
           F T     L     ++  Y K G+V  A  +F++M + DV+ W+ MI  YAQ   + EA+
Sbjct: 273 FKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAI 332

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
            +F RM    V PN+ T  ++L AC  +  L+ G  IH ++     + +NV V  AL++M
Sbjct: 333 EMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKV-GLDMNVFVSNALMDM 391

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+KCG ++++  +F    +   V WN++IVGY   G G+ AL LF +M   +++ +++T+
Sbjct: 392 YAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTY 451

Query: 213 IGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
             +L ACA    +  G +  + ++K  Y     V +   ++++ ++ G +++A +LV DM
Sbjct: 452 SSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA-RLVFDM 508

Query: 272 KIEPDSVLWGTLLGACRLHG 291
             E D V W  ++    +HG
Sbjct: 509 LREHDQVSWNAMISGYSVHG 528



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 150/336 (44%), Gaps = 49/336 (14%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++ CY+  G    AR +FD +E KD+V W  M+  Y ++    E+L LF RM     +
Sbjct: 184 TALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFK 243

Query: 105 PNEVTAVAVLSACGQIGALESGRWIH------SYIENSRNIKVNVQVGTALINMYSKCGS 158
           PN  T  +VL AC  +     G+ +H      SY+E        + VG  LI++Y K G 
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE-------LFVGVELIDLYIKSGD 296

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           + DA  VF+ +   DV+ W+ MI  YA     ++A+++F  M R  + P+  T   LL A
Sbjct: 297 VDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQA 356

Query: 219 CA-----------HAGLVNEGRRF----FNTMKDEYAIEPKVEH---------------Y 248
           CA           H  +V  G        N + D YA   ++E+               +
Sbjct: 357 CASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSW 416

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             ++    +AG  E+A  L  DM   +++   V + ++L AC     +  G +I   L  
Sbjct: 417 NTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHS-LSV 475

Query: 306 QNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKE 339
           + + +  T V   L ++YA  GN      V  +++E
Sbjct: 476 KTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLRE 511



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 195/469 (41%), Gaps = 71/469 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGE 56
           T   S + + Y+  SL+    R GD  + + L   + ++     L +   +L  Y K   
Sbjct: 35  TSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDS 94

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           +  A  LFD+M +++ V +  +I GY+Q    +EA+ LF R+  E  E N      VL  
Sbjct: 95  LPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKL 154

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
                  + G  +H+ +        +  VGTALI+ YS CG  + AR VFD +  KD+V 
Sbjct: 155 LVSAEWAKLGFSVHACVYK-LGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS 213

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TM 235
           W  M+  Y  +   +++L+LF+ M  +  KP++ TF  +L AC    + N G+       
Sbjct: 214 WTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAF 273

Query: 236 KDEYAIE---------------------------PK--VEHYGCMVNLLSRAGQVEEAYK 266
           K  Y  E                           PK  V  +  M+   +++ Q EEA +
Sbjct: 274 KTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIE 333

Query: 267 LVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYA 322
           +   M+   + P+     +LL AC    ++ LG +I  +++   L  N      L ++YA
Sbjct: 334 MFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYA 393

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
             G  +   ++          + P C+ +   N V                      I G
Sbjct: 394 KCGRMENSLQL--------FSESPNCTDVSW-NTV----------------------IVG 422

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
           +++A G   +  I+  D+ E Q Q +   +S  L    G+ + +PG+ I
Sbjct: 423 YVQA-GNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQI 470


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/465 (44%), Positives = 303/465 (65%), Gaps = 1/465 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K   +  + +  +L+ +Y++ GD++ A KLF       L+S  +M++ Y K   V  A
Sbjct: 267 SLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNA 326

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + +FD M EKDVV W+ MI GYAQ+ L +E L LF+ M     +P+E T V+V+SAC ++
Sbjct: 327 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 386

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            ALE G+W+H+YI+ +  + +NV +GT LI+MY KCG ++ A  VF  + +K +  WN++
Sbjct: 387 AALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNAL 445

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I+G AM+G  + +L +F+ M +  + P++ITF+G+L AC H GLV+EG+  F +M  ++ 
Sbjct: 446 ILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHK 505

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P V+HYGCMV+LL RAG+++EA +L+  M + PD   WG LLGAC+ HG+  +G ++ 
Sbjct: 506 IQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVG 565

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             LI     + G +VLLSNIYA+ G WD V  +R +M +  V K PGCS IE +  +HEF
Sbjct: 566 RKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEF 625

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           LAGD  HP    I  ML E+   LK EGY P    VL D+ E++K+++L  HSEKLA+AF
Sbjct: 626 LAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAF 685

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           GLI+  P T I+I+KNLR+C DCH   KLISK   RKI+   R +
Sbjct: 686 GLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVFLFRGQ 730



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 170/371 (45%), Gaps = 72/371 (19%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
           S++  Y   G+V  A+ ++  MP+RS+++  +M+  +  +G V  A  LFD+M EKD+V 
Sbjct: 149 SILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVT 208

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-I 133
           W+ +I  + Q+ +  EA+  F  M    V  +EV AV+ LSAC  +  +  G+ IHS  +
Sbjct: 209 WSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSL 268

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSL-------------------------------KDA 162
           +      +N+Q   ALI MYSKCG +                                +A
Sbjct: 269 KIGTESYINLQ--NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNA 326

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + +FD + +KDVV W+SMI GYA +    + L LF EM     KP + T + ++SACA  
Sbjct: 327 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 386

Query: 223 GLVNEGRRFF---------------NTMKDEY---------------AIEPKVEHYGCMV 252
             + +G+                   T+ D Y                IE  +  +  ++
Sbjct: 387 AALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALI 446

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK-----IAEYLI 304
             L+  G VE +  +  +MK   + P+ + +  +LGACR  G +  G+      I ++ I
Sbjct: 447 LGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKI 506

Query: 305 SQNLANSGTYV 315
             N+ + G  V
Sbjct: 507 QPNVKHYGCMV 517



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 17/233 (7%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
            R +F+ +E  +   WN+MI  Y Q    + A  L++ ML+  +  +  T   ++ AC  
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSI 90

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             +    + +H+++        +V V   LIN +S C ++ DA  VF+  +  D V WNS
Sbjct: 91  RRSEWEAKQVHNHVL-KLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNS 149

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           ++ GY   G  ++A  ++++M    +  S+  I   G+       GLV E  + F+ M  
Sbjct: 150 ILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGM------RGLVVEACKLFDEM-- 201

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGAC 287
              +E  +  +  ++    +    EEA +  + M    +  D V+  + L AC
Sbjct: 202 ---LEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 251


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/480 (41%), Positives = 299/480 (62%), Gaps = 33/480 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   D D+++ +SL+D+YA+   +  + + F  +P+                       
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPR----------------------- 290

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                   KD + WN +I G  Q+G  +  L  FRRML E V+P  V+  +V+ AC  + 
Sbjct: 291 --------KDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLT 342

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  GR +H  I        N  + ++L++MY+KCG++K AR VFDR++ +D+V W ++I
Sbjct: 343 ALSLGRQLHGCIVR-LGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAII 401

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +G AMHG   DA+ LF  M    ++P  + F+ +L+AC+HAGLV+EG R+FN+M+ ++ I
Sbjct: 402 MGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGI 461

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDSVLWGTLLGACRLHGNIALGEKIA 300
            P +EHY  + +LL RAG++EEAY  + +M+ ++P   +W  LL ACR H ++ L EK+ 
Sbjct: 462 APGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVL 521

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L+S +  N G YVL+SNIY+A   W   AR+R  M++KG++K P CS IE+ N+VH F
Sbjct: 522 DKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTF 581

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AGD  HP   +I   L+ +   ++ EGYV  T  VLHD+ E+ K+  L  HSE+LA+A+
Sbjct: 582 MAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAY 641

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G+IST  GT+I+++KN+RVC DCH   K I+K  GR+I +RD +RFHHF NG+CSCGDYW
Sbjct: 642 GIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 147/293 (50%), Gaps = 20/293 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TV+  LD DLY++ +L++ YA+     +A K+F   P+R              +  +   
Sbjct: 136 TVRLGLDSDLYIANALINTYAK---FHNAGKVFDVFPKRG-------------ESGIDCV 179

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQ 119
           + +FD M  +DVV WN +I G+AQ+G+  EAL + R M    K++P+  T  ++L    +
Sbjct: 180 KKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAE 239

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
              +  G+ IH Y   +     +V +G++LI+MY+KC  L+ +   F  +  KD + WNS
Sbjct: 240 HVDVNKGKEIHGYAVRN-GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNS 298

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I G   +G     L  F  M +  +KP  ++F  ++ ACAH   ++ GR+    +    
Sbjct: 299 IIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIV-RL 357

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
             +        +V++ ++ G ++ A + V D   + D V W  ++  C +HG+
Sbjct: 358 GFDDNEFIASSLVDMYAKCGNIKMA-RYVFDRIDKRDMVAWTAIIMGCAMHGH 409



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 27/254 (10%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W+ +I  Y  H L + +   F  M +  V PN     ++L A   +   +    +H+   
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHA-CT 136

Query: 135 NSRNIKVNVQVGTALINMYSK---CGSLKD------------ARLVFDRVNDKDVVVWNS 179
               +  ++ +  ALIN Y+K    G + D             + VFD +  +DVV WN+
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 180 MIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +I G+A +G   +AL +  EM +  +LKP   T   +L   A    VN+G+         
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHG----- 251

Query: 239 YAI----EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           YA+    +  V     ++++ ++  ++E + +    +    D++ W +++  C  +G   
Sbjct: 252 YAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILP-RKDAISWNSIIAGCVQNGEFD 310

Query: 295 LGEKIAEYLISQNL 308
            G      ++ +N+
Sbjct: 311 RGLGFFRRMLKENV 324


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/474 (42%), Positives = 306/474 (64%), Gaps = 5/474 (1%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLFDD 66
           +  +S++   A   D+   E+++A + +  L S+     ++++ Y++ G +  AR  FD 
Sbjct: 251 FTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDV 310

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           + EK++V +N +++ YA+   + EA  LF  +       N  T  ++LS    IGA+  G
Sbjct: 311 LFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKG 370

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             IHS I  S   K N+ +  ALI+MYS+CG+++ A  VF+ + D +V+ W SMI G+A 
Sbjct: 371 EQIHSRILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAK 429

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HGF   AL+ F++M    + P+++T+I +LSAC+H GL++EG + F +MK E+ I P++E
Sbjct: 430 HGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRME 489

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY C+V+LL R+G +EEA +LV  M  + D+++  T LGACR+HGN+ LG+  AE ++ Q
Sbjct: 490 HYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQ 549

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           +  +   Y+LLSN++A+ G W+ VA +R  MKE+ + KE GCS IE+ NKVH+F  GD  
Sbjct: 550 DPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTS 609

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP+++EIY  L+++   +K  GY+P T  VLHD+ E+QK+  L  HSEK+AVA+G IST 
Sbjct: 610 HPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTS 669

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I++ KNLRVC DCH  FK  S    ++I++RD NRFHHF +GTCSC DYW
Sbjct: 670 TSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 136/241 (56%), Gaps = 15/241 (6%)

Query: 54  QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
            G++ +A  +FD M +++VV W +MI  + Q G + +A+ LF  M+     P+  T   V
Sbjct: 92  NGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGV 151

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVN 170
           +SAC ++G L  GR  H  +  S  + ++V VG +L++MY+KC   GS+ DAR VFDR+ 
Sbjct: 152 VSACAEMGLLSLGRQFHCLVMKS-GLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP 210

Query: 171 DKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
             +V+ W ++I GY    G  ++A++LF EM + ++KP+  TF  +L ACA+   +  G 
Sbjct: 211 VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270

Query: 230 RFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + +  +     ++ ++    C    ++++ SR G +E A K   D+  E + V + T++ 
Sbjct: 271 QVYALV-----VKMRLASINCVGNSLISMYSRCGNMENARK-AFDVLFEKNLVSYNTIVN 324

Query: 286 A 286
           A
Sbjct: 325 A 325



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 168/346 (48%), Gaps = 38/346 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           +K  LD D+ V  SLVD+YA+    G V  A K+F  MP  +++S T ++T Y + G   
Sbjct: 172 MKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSG--- 228

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
                                      G   EA+ LF  M+  +V+PN  T  +VL AC 
Sbjct: 229 ---------------------------GCDREAIELFLEMVQGQVKPNHFTFSSVLKACA 261

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +  +  G  +++ +   R   +N  VG +LI+MYS+CG++++AR  FD + +K++V +N
Sbjct: 262 NLSDIWLGEQVYALVVKMRLASINC-VGNSLISMYSRCGNMENARKAFDVLFEKNLVSYN 320

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           +++  YA     ++A +LFNE+       +  TF  LLS  +  G + +G +  + +   
Sbjct: 321 TIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS 380

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
              +  +     ++++ SR G +E A+++  +M  + + + W +++     HG      +
Sbjct: 381 -GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHGFATRALE 438

Query: 299 IAEYLISQNLA-NSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGV 342
               ++   ++ N  TY+ + +  + +G   +G+   +++  E G+
Sbjct: 439 TFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGI 484



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 144/314 (45%), Gaps = 41/314 (13%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++D+V W+ +I  YA +  A EA+  F  ML     PNE     V  AC     +  G+ 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKC-GSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           I  ++  +   + +V VG ALI+M+ K  G L+ A  VFDR+ D++VV W  MI  +   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF--------------- 232
           GF +DA+ LF +M      P   T  G++SACA  GL++ GR+F                
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 233 NTMKDEYA-------------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-- 271
            ++ D YA                   +   +     +   +   G   EA +L ++M  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 272 -KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWD 328
            +++P+   + ++L AC    +I LGE++   ++   LA  N     L+S +Y+  GN +
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLIS-MYSRCGNME 302

Query: 329 GVARVRTLMKEKGV 342
              +   ++ EK +
Sbjct: 303 NARKAFDVLFEKNL 316



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 35/202 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     +L++  +L+ +Y+R G++ +A ++F  M   +++S T+M+T +AK        
Sbjct: 378 LKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAK-------- 429

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG A  AL  F +ML   V PNEVT +AVLSAC  +G
Sbjct: 430 -----------------------HGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVG 466

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            +  G      ++    I   ++    ++++  + G L++A  LV       D +V  + 
Sbjct: 467 LISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTF 526

Query: 181 IVGYAMHG---FGKDALQLFNE 199
           +    +HG    GK A ++  E
Sbjct: 527 LGACRVHGNMDLGKHAAEMILE 548



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           N +D+V W+++I  YA +    +A+  F +M      P++  F G+  AC++   ++ G+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 230 RFFNTMKDEYAIEPKVEHYGC-MVNLLSRA-GQVEEAYKLVMDMKIEPDSVLWGTLL 284
             F  +      E  V   GC ++++  +  G +E AYK V D   + + V W  ++
Sbjct: 63  IIFGFLLKTGYFESDV-CVGCALIDMFVKGNGDLESAYK-VFDRMPDRNVVTWTLMI 117


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 302/481 (62%), Gaps = 34/481 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   DKD+++ +SL+D+YA+                           C   +  V A  
Sbjct: 226 IRHGFDKDVFIGSSLIDMYAK---------------------------CTQVELSVCA-- 256

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             F  +  +D + WN +I G  Q+G  ++ L  FRRML EKV+P +V+  +V+ AC  + 
Sbjct: 257 --FHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLT 314

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVVVWNS 179
           AL  G+ +H+YI        N  + ++L++MY+KCG++K AR +F+++   D+D+V W +
Sbjct: 315 ALNLGKQLHAYIIR-LGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTA 373

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I+G AMHG   DA+ LF EM    +KP  + F+ +L+AC+HAGLV+EG ++FN+M+ ++
Sbjct: 374 IIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDF 433

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            + P +EHY  + +LL RAG++EEAY  + +M  EP   +W TLL ACR H NI L EK+
Sbjct: 434 GVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKV 493

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              ++  +  N G +V++SNIY+A   W   A++R  M++ G++K P CS IE+ NKVH 
Sbjct: 494 VNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHT 553

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FLAGD  HP   +I   L  +   ++ EGYV  T  VLHD+ E+ K++ L  HSE+LA+A
Sbjct: 554 FLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIA 613

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+IST  GT+I+++KN+RVC DCH   K ++K  GR+I++RD +RFHHF NG+CSCGDY
Sbjct: 614 FGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDY 673

Query: 480 W 480
           W
Sbjct: 674 W 674



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 143/296 (48%), Gaps = 20/296 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++     DLY + +L+++Y++    LS    F           +          ++ + R
Sbjct: 103 IRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSV---------KIDSVR 153

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M  +DVV WN +I G AQ+G+  EAL + + M  E + P+  T  ++L    +  
Sbjct: 154 KLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA 213

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +  G+ IH Y         +V +G++LI+MY+KC  ++ +   F  ++++D + WNS+I
Sbjct: 214 NVTKGKEIHGYAIR-HGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSII 272

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G   +G     L  F  M + ++KP  ++F  ++ ACAH   +N G++        Y I
Sbjct: 273 AGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQL-----HAYII 327

Query: 242 EPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTLLGACRLHGN 292
               +        ++++ ++ G ++ A  +   +++ + D V W  ++  C +HG+
Sbjct: 328 RLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGH 383



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 135/338 (39%), Gaps = 60/338 (17%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T + TC+ KQ     A+++         + W  +I  YA HGL   +L  F  + +  + 
Sbjct: 17  TVVPTCHVKQLH---AQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGIS 73

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS------ 158
           P+     ++L A          + +H+ +        ++    AL+NMYSK         
Sbjct: 74  PDRHLFPSLLRASTLFKHFNLAQSLHAAVIR-LGFHFDLYTANALMNMYSKFHPHLSPLH 132

Query: 159 ----------------LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
                           +   R +FDR+  +DVV WN++I G A +G  ++AL +  EM +
Sbjct: 133 EFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGK 192

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYAIEPKVEH 247
             L+P   T   +L        V +G+                  +++ D YA   +VE 
Sbjct: 193 ENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVEL 252

Query: 248 YGCMVNLLSR----------AGQVEEA--------YKLVMDMKIEPDSVLWGTLLGACRL 289
             C  +LLS           AG V+          ++ ++  K++P  V + +++ AC  
Sbjct: 253 SVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAH 312

Query: 290 HGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGN 326
              + LG+++  Y+I      N      L ++YA  GN
Sbjct: 313 LTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGN 350


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/440 (44%), Positives = 289/440 (65%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  ++ +L  Y K GE+ +AR +F+ +   D V W  +I G  ++G   +AL  + +M  
Sbjct: 535 LFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRL 594

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V+P+E T   ++ AC  + ALE G+ IH+ I    N   +  V T+L++MY+KCG+++
Sbjct: 595 AGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK-LNCAFDPFVMTSLVDMYAKCGNIE 653

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  +F R+N + V +WN+MIVG A HG  ++AL  FNEM    + P  +TFIG+LSAC+
Sbjct: 654 DAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GL ++  + F++M+  Y +EP++EHY C+V+ LSRAG ++EA K+V  M  E  + ++
Sbjct: 714 HSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMY 773

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            TLL ACR+ G+   GE++AE L + + ++S  YVLLSNIYAA   W+     R +MK  
Sbjct: 774 RTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRV 833

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            V+KEPG S I++ NKVH F+AGD  H ++  IY  +E +   +K EGYVP T+  L DI
Sbjct: 834 NVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDI 893

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+++L  HSEKLA+A+GL+ T P T+++++KNLRVC DCH   K IS    R+I++
Sbjct: 894 EEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVL 953

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF +G CSCGDYW
Sbjct: 954 RDANRFHHFRSGICSCGDYW 973



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 146/291 (50%), Gaps = 7/291 (2%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +F++   L   +SL + Y  G  V +   L A +   S VS T ++  Y+K G++  A +
Sbjct: 398 QFTITSVLRACSSLEESYCVGRQVHTC-ALKAGIVLDSFVS-TALIDVYSKGGKMEEAEL 455

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF + +  D+  WN M+ G+       EAL LF  M     + +++T      A G +  
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G+ IH+ +   R    ++ V + +++MY KCG +K AR VF+++   D V W ++I 
Sbjct: 516 LQQGKQIHAVVIKMR-FHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVIS 574

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAI 241
           G   +G  + AL  +++M    ++P + TF  L+ AC+    + +G++   N MK   A 
Sbjct: 575 GCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAF 634

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +P V     +V++ ++ G +E+AY L   M       LW  ++     HGN
Sbjct: 635 DPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMIVGLAQHGN 682



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 46/321 (14%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           + +  Y K G V  AR +F  M+E D++ WN +I G A+ GL   +L LF  +L   + P
Sbjct: 337 SAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLP 396

Query: 106 NEVTAVAVLSACGQI-GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           ++ T  +VL AC  +  +   GR +H+    +  I ++  V TALI++YSK G +++A L
Sbjct: 397 DQFTITSVLRACSSLEESYCVGRQVHTCALKA-GIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--------------------CRIR 204
           +F   +  D+  WN+M+ G+ +    ++AL+LF+ M                    C +R
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 205 LKPS--------------DITFI-GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           L+                D+  I G+L      G +   R+ FN +     +       G
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 250 CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           C+ N     G+ E+A      M+   ++PD   + TL+ AC L   +  G++I   ++  
Sbjct: 576 CVEN-----GEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKL 630

Query: 307 NLA-NSGTYVLLSNIYAAIGN 326
           N A +      L ++YA  GN
Sbjct: 631 NCAFDPFVMTSLVDMYAKCGN 651



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 117/262 (44%), Gaps = 44/262 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG---EV- 57
           VK  L  D++V+ +LV++YA+   +  A  LF  MP R +V    M+  Y + G   EV 
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 58  ---------------------------------------AAARVLFDDMEEKDVVCWNVM 78
                                                  A A  LF   ++ DV  WN  
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKT 268

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           +  Y Q G   EA+  FR M+  +V  + +T + +LS    +  LE G+ IH  +     
Sbjct: 269 LSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGW 328

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
            +  V V  + INMY K GS+  AR +F ++ + D++ WN++I G A  G  + +L+LF 
Sbjct: 329 DQF-VSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFI 387

Query: 199 EMCRIRLKPSDITFIGLLSACA 220
           ++ R  L P   T   +L AC+
Sbjct: 388 DLLRSGLLPDQFTITSVLRACS 409



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 155/356 (43%), Gaps = 53/356 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGEVAA 59
           V   L+ D YV+ +L+ +YA+ G + SA KLF   PQ  R LV+   +L  YA  GE+  
Sbjct: 40  VTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGEL-- 97

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
                 D+E+                   +EA  +FR +    +     T   +   C  
Sbjct: 98  -----HDVEK------------------THEAFHIFRLLRQSVMLTTRHTLSPLFKLCLL 134

Query: 120 IGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
            G+  +   +  Y      +K+ +Q    V  AL+N+Y+K   +++AR++FDR+  +DVV
Sbjct: 135 YGSPSASEALQGYA-----VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVV 189

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN---EGRRFF 232
           +WN M+  Y   G G + L LF+   R  L+P  ++   +L       +     E  R +
Sbjct: 190 LWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAY 249

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRL 289
            T       +  V  +   ++   +AG+  EA     DM   ++  DS+ +  +L     
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 290 HGNIALGEKIAEYLIS------QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
             ++ LG++I   ++        ++ANS       N+Y   G+ +   R+   MKE
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAI-----NMYVKAGSVNYARRMFGQMKE 360



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 31/157 (19%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V TSLVD+YA+ G++  A  LF  M  RS+     M+   A+ G             
Sbjct: 635 DPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGN------------ 682

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                              A EAL  F  M +  V P+ VT + VLSAC   G       
Sbjct: 683 -------------------AEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYK 723

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
               ++ +  ++  ++  + L++  S+ G +++A  V
Sbjct: 724 NFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKV 760


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 303/476 (63%), Gaps = 25/476 (5%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VS SL+ +YA+  ++ SAE +F  M ++ +VS T+M+T Y++ G VA AR  FD M EK+
Sbjct: 428 VSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKN 487

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIH 130
           V+ WN M+  Y QHG   + L +++ ML+E+ V P+ VT V +   C  +GA + G  I 
Sbjct: 488 VITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQI- 546

Query: 131 SYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
                 R +KV    +  V  A+I MYSKCG + +AR VFD +N KD+V WN+MI GY+ 
Sbjct: 547 ----IGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 602

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG GK A+++F+++ +   KP  I+++ +LS C+H+GLV EG+ +F+ MK  + I P +E
Sbjct: 603 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLE 662

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           H+ CMV+LL RAG + EA  L+ DM ++P + +WG LL AC++HGN  L E  A+++   
Sbjct: 663 HFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFEL 722

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           +  +SG+Y+L++ IYA  G  D  A++R LM++KG++K PG S +E+ NKVH F A D+ 
Sbjct: 723 DSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVS 782

Query: 367 HPKSKEIYMMLEEINGWLKAEGYV--PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
           HP+   I   L+E+   +   GYV    T+  +H             HSEKLAVAFGL++
Sbjct: 783 HPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIH-------------HSEKLAVAFGLMT 829

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
                 I I+KNLR+C DCH V KLIS  TGR+ ++RD  RFHHF  G+CSCGDYW
Sbjct: 830 LPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 172/345 (49%), Gaps = 9/345 (2%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V+ +LVD++ R G V  A +LF  + + ++    +ML  Y K   V  A  
Sbjct: 186 KFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALE 245

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M E+DVV WN+M+   +Q G   EAL +   M ++ V  +  T  + L+AC ++ +
Sbjct: 246 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 305

Query: 123 LESGRWIHSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L  G+ +H+ +   RN+  ++  V +AL+ +Y+K G  K+A+ VF+ ++D++ V W  +I
Sbjct: 306 LRWGKQLHAQV--IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLI 363

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G+  +G   ++++LFN+M    +         L+S C     +  GR+  +       I
Sbjct: 364 SGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 423

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +  V     ++++ ++   ++ A  +   M  E D V W +++ A    GN+A   K  E
Sbjct: 424 QAVVVS-NSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITAYSQVGNVA---KARE 478

Query: 302 YLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE 345
           +    +  N  T+  +   Y   G   DG+   + ++ E+ V+ +
Sbjct: 479 FFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 523



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 57/335 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A +L    +   ++++   ML  YAK G ++ A
Sbjct: 51  VAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDA 110

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE----PNEVTAVAVLSA 116
             LF  M  +DV  WN ++ GY Q   + + LV     L+        PN  T    + +
Sbjct: 111 VELFGRMPARDVASWNTLMSGYFQ---SRQYLVSLETFLSMHRSGDSWPNAFTLACAMKS 167

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           CG +G       + + ++   + + + +V  AL++M+ +CG++  A  +F R+ +  +  
Sbjct: 168 CGALGWHSLALQLLAMVQKFDS-QDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 177 WNSMIVGYAMHGFGKD-ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            NSM+ GY +  +G D AL+LF+ M      P                            
Sbjct: 227 RNSMLAGY-VKTYGVDHALELFDSM------P---------------------------- 251

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGN 292
                 E  V  +  MV+ LS++G+V EA  +V+DM+   +  DS  + + L AC    +
Sbjct: 252 ------ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 305

Query: 293 IALGEKIAEYLISQNLANSGTYV--LLSNIYAAIG 325
           +  G+++   +I +NL +   YV   L  +YA  G
Sbjct: 306 LRWGKQLHAQVI-RNLPHIDPYVASALVELYAKSG 339



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 32/189 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  D  V+ +++ +Y++ G +L A K+F  +  + +VS   M+T Y         
Sbjct: 550 TVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY--------- 600

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                 +QHG+  +A+ +F  +L    +P+ ++ VAVLS C   
Sbjct: 601 ----------------------SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 638

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G ++ G++    ++ + NI   ++  + ++++  + G L +A+ + D +  K    VW +
Sbjct: 639 GLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGA 698

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 699 LLSACKIHG 707


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/430 (45%), Positives = 292/430 (67%), Gaps = 5/430 (1%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           +A  GE+  A+ +FD+M+ +DVV W  MIDGY +      AL LFR M    V+P+E T 
Sbjct: 226 FAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTM 285

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V++L AC  +GALE G W+ + I+ + N K +  VG AL++MY KCG+++ A+ VF  + 
Sbjct: 286 VSILIACALLGALELGEWVKTCIDKNSN-KNDSFVGNALVDMYFKCGNVRKAKKVFKEMY 344

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            KD   W +MIVG A++G G++AL +F+ M    + P +IT+IG+L AC    +V++G+ 
Sbjct: 345 QKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKS 400

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
           FF  M  ++ I+P V HYGCMV+LL   G +EEA +++++M ++P+S++WG+ LGACR+H
Sbjct: 401 FFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVH 460

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
            N+ L +  A+ ++     N   YVLL NIYAA   W+ + +VR LM E+G++K PGCS 
Sbjct: 461 KNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSL 520

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLE 410
           +EL+  V+EF+AGD  HP+SKEIY  LE +   L   GY P T  V  D+GE+ K+ +L 
Sbjct: 521 MELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALY 580

Query: 411 VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470
            HSEKLA+A+ LIS+ PG +I+IVKNLR+C DCH + KL+S+   R+++++D+ RFHHF 
Sbjct: 581 RHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFR 640

Query: 471 NGTCSCGDYW 480
           +G+CSC ++W
Sbjct: 641 HGSCSCNNFW 650



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 30/238 (12%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G V  A  +FD  +  +VV WN+M+ GY              R+   K+       + VL
Sbjct: 156 GIVDLAHKVFDMGDACEVVTWNIMLSGY-------------NRVKQFKIS----KMLLVL 198

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
           SAC ++  LE G+ I  YI            G  + +M++ CG + +A+ VFD +  +DV
Sbjct: 199 SACSKLKDLEWGKHIFKYIN-----------GGIVEHMFAACGEMDEAQGVFDNMKTRDV 247

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W +MI GY        AL LF EM    +KP + T + +L ACA  G +  G  +  T
Sbjct: 248 VSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELG-EWVKT 306

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
             D+ + +        +V++  + G V +A K+  +M  + D   W T++    ++G+
Sbjct: 307 CIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM-YQKDKFTWTTMIVGLAINGH 363



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 134/310 (43%), Gaps = 28/310 (9%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
             C  + G +  A  +FD +    +  WN MI GY++       + ++  ML   ++P+ 
Sbjct: 48  FCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDR 107

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
            T    L    +  AL+ G+ + ++         N+ V  A I+M+S CG +  A  VFD
Sbjct: 108 FTFPFSLKGFTRDMALQHGKELLNHAV-KHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD 166

Query: 168 RVNDKDVVVWNSMIVGY-AMHGFGKDALQLFNEMCRIRLKPSD-----ITFIG------L 215
             +  +VV WN M+ GY  +  F    + L    C  +LK  +       +I       +
Sbjct: 167 MGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACS-KLKDLEWGKHIFKYINGGIVEHM 225

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK--- 272
            +AC   G ++E +  F+ MK        V  +  M++   R      A  L  +M+   
Sbjct: 226 FAAC---GEMDEAQGVFDNMKTR-----DVVSWTAMIDGYLRMNHFIGALALFREMQMSN 277

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGV 330
           ++PD     ++L AC L G + LGE + +  I +N   + ++V   L ++Y   GN    
Sbjct: 278 VKPDEFTMVSILIACALLGALELGEWV-KTCIDKNSNKNDSFVGNALVDMYFKCGNVRKA 336

Query: 331 ARVRTLMKEK 340
            +V   M +K
Sbjct: 337 KKVFKEMYQK 346



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 29/204 (14%)

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G++  A  VFD +    + +WN+MI GY+     ++ + ++  M    +KP   TF   L
Sbjct: 55  GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSL 114

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
                   +  G+   N    ++  +  +      +++ S  G V+ A+K V DM    +
Sbjct: 115 KGFTRDMALQHGKELLNH-AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHK-VFDMGDACE 172

Query: 277 SVLWGTL------------------LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318
            V W  +                  L AC    ++  G+ I +Y+      N G   ++ 
Sbjct: 173 VVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYI------NGG---IVE 223

Query: 319 NIYAAIGNWDGVARVRTLMKEKGV 342
           +++AA G  D    V   MK + V
Sbjct: 224 HMFAACGEMDEAQGVFDNMKTRDV 247


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/483 (42%), Positives = 310/483 (64%), Gaps = 9/483 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS-----LVSLTTMLTCYAKQGEVAAA 60
           +  D+    SL    A+GGD  SA+ L   + +R      +++   ++  YAK   + AA
Sbjct: 266 VSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAA 325

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQ 119
           + +FD M  +D V WN +I GY Q+GLANEA+  +  M   E ++  + T V+VL A   
Sbjct: 326 QRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSH 385

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL+ G  +H+ +     + V+V VGT LI++Y+KCG L +A L+F+++  +    WN+
Sbjct: 386 LGALQQGMRMHA-LSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNA 444

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I G  +HG G +AL LF+ M +  +KP  +TF+ LL+AC+HAGLV++GR FF+ M+  Y
Sbjct: 445 IISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTY 504

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I P  +HY CM ++L RAGQ++EA+  + +M I+PDS +WG LLGACR+HGN+ +G+  
Sbjct: 505 DIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVA 564

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           ++ L   +  N G YVL+SN+YA +G WDGV  VR+L++ + +QK PG SSIE+   V+ 
Sbjct: 565 SQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNV 624

Query: 360 FLAGDLR--HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           F +G+    HP+ +EI   L  +   +++ GYV     VL D+ + +K++ L  HSE+LA
Sbjct: 625 FYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLA 684

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFG+I+T   T + I KNLRVC DCH   K IS+ T R+I++RD NRFHHF +G CSCG
Sbjct: 685 IAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCG 744

Query: 478 DYW 480
           D+W
Sbjct: 745 DFW 747



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 141/295 (47%), Gaps = 34/295 (11%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  LDK+L+V  +L+D+Y                                K G +  A
Sbjct: 195 AVKHGLDKELFVCNALIDVYG-------------------------------KLGMLEEA 223

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           + +F  ME +D+V WN +I G  Q G    AL +F+ M    V P+ +T V++ SA  Q 
Sbjct: 224 QCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQG 283

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G   S + +H Y+        ++  G A+++MY+K  +++ A+ +FD +  +D V WN++
Sbjct: 284 GDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTL 343

Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I GY  +G   +A++ +  M +   LK    TF+ +L A +H G + +G R  + +  + 
Sbjct: 344 ITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMR-MHALSIKI 402

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
            +   V    C+++L ++ G++ EA  L   M     +  W  ++    +HG+ A
Sbjct: 403 GLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGHGA 456



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 8/307 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S+ +  +++  Y + G ++ A  +FD+M E+DV  WN M+ G  ++  A EA+ LF RM+
Sbjct: 102 SVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMV 161

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            E V  + VT  +VL  C  +G       +H Y      +   + V  ALI++Y K G L
Sbjct: 162 GEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVK-HGLDKELFVCNALIDVYGKLGML 220

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           ++A+ VF  +  +D+V WNS+I G    G    AL++F  M    + P  +T + L SA 
Sbjct: 221 EEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAI 280

Query: 220 AHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           A  G     +      M+  + ++  +     +V++ ++   +E A ++   M ++ DSV
Sbjct: 281 AQGGDGRSAKSLHCYVMRRGWDVDDIIAG-NAIVDMYAKLSNIEAAQRMFDSMPVQ-DSV 338

Query: 279 LWGTLLGACRLHG--NIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRT 335
            W TL+     +G  N A+ E+       + L A  GT+V +   Y+ +G      R+  
Sbjct: 339 SWNTLITGYMQNGLANEAV-ERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHA 397

Query: 336 LMKEKGV 342
           L  + G+
Sbjct: 398 LSIKIGL 404



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 40/221 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K  L+ D+YV T L+DLYA+ G +  A  LF  MP+RS      +++     G     
Sbjct: 399 SIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHG----- 453

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG   EAL LF RM  E ++P+ VT V++L+AC   
Sbjct: 454 ------------------------HGA--EALTLFSRMQQEGIKPDHVTFVSLLAACSHA 487

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ GR     ++ + +I    +    + +M  + G L +A   + +     D  VW +
Sbjct: 488 GLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGA 547

Query: 180 MIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +HG    GK A Q   E     L P ++ +  L+S
Sbjct: 548 LLGACRIHGNVEMGKVASQNLFE-----LDPENVGYYVLMS 583



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 15/230 (6%)

Query: 76  NVMIDGYAQHGLANEALVLFRRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
           N +I  +++  L   A  L R +L  A    P+  T  +++ A     +  S   +H+  
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAP---SNASAAQLHACA 93

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                ++ +V    +L++ Y + G + +A  VFD ++++DV  WN+M+ G   +    +A
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV--EHYGC- 250
           + LF  M    +    +T   +L  C     V  G +    +   YA++  +  E + C 
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDKELFVCN 208

Query: 251 -MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            ++++  + G +EEA  +   M+   D V W +++  C   G  A   K+
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECR-DLVTWNSIISGCEQRGQTAAALKM 257


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/444 (47%), Positives = 290/444 (65%), Gaps = 14/444 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----- 98
           LTT+L  YAK G++A+AR +FD+M  +DV  WN ++ G AQ    N AL LF R+     
Sbjct: 149 LTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQ 208

Query: 99  -LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
            L  + EPNEVT VA LSAC QIG L+ G ++H + +    +  NV+V  +LI+MYSKCG
Sbjct: 209 ELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRF-GLDRNVRVCNSLIDMYSKCG 267

Query: 158 SLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           SL  A  VF  +   D+ +V +N+ I  ++MHG G DAL+LF+EM   R++P  +T++ +
Sbjct: 268 SLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAV 326

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L  C H+GLV++G R FN+M+    + P ++HYG +V+LL RAG++ EAY  V+ M    
Sbjct: 327 LCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPA 382

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D VLW TLLGA ++HG + L E  A  L        G YVLLSN+YA+   W  V RVR 
Sbjct: 383 DIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRD 442

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M+   V+K PG S  E+   +H+F+ GD  HP+ +EIY  LE+I   +   GY P+T  
Sbjct: 443 TMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSN 502

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLHDIGE++KQ +L  HSEKLA+AFGLI+T PG +++++KNLR+C DCH V KLISK  G
Sbjct: 503 VLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYG 562

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDY 479
           R I++RDR RFH F +G CSC DY
Sbjct: 563 RVIVIRDRARFHRFEDGQCSCRDY 586


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/430 (44%), Positives = 281/430 (65%), Gaps = 1/430 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           +A+ G V  AR LFD +  KD+V W   I+ Y +  +  EAL L ++M+ + + P+ +T 
Sbjct: 153 FARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITL 212

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           + V+ AC  + + +    +H  I         + V TALI++Y KCGSL  AR VFD + 
Sbjct: 213 LGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQ 272

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +++++ W++MI GY MHG+G++AL LF++M +  +KP  ITF+ +LSAC+H+GLV EG  
Sbjct: 273 ERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWE 331

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
            FN+M  ++ + P+ EHY CMV++L RAG+++EA   +  M + P++ +WG LLGACR+H
Sbjct: 332 CFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIH 391

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
            N+ L E +A  L   +  N+G YV+L NIY   G       +RTLMK +GV+K  G S 
Sbjct: 392 LNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSV 451

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLE 410
           IE+ NK++ F+AGD  HP++  IY  LE +   ++ EGY P    VLHD+ E+ K++ L 
Sbjct: 452 IEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLY 511

Query: 411 VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470
           +HSEKLA+ FGL++  PG+ I+I KNLRVC DCH   K ISK TGR+I++RD +RFHHF 
Sbjct: 512 LHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFK 571

Query: 471 NGTCSCGDYW 480
           NG CSC DYW
Sbjct: 572 NGACSCRDYW 581



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 124/257 (48%), Gaps = 27/257 (10%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++T Y K  +   +R +FD+M +K+ V W+ +I    Q     E   LFR+ML+E   P
Sbjct: 50  SLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP 109

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           +     A+L+A   + + E    ++  + EN  +   +VQ  +A   M+++CG ++ AR 
Sbjct: 110 SRG---AILNAMACVRSHEEADDVYRVVVENGLDFDQSVQ--SAAAGMFARCGRVEVARK 164

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC----- 219
           +FD +  KD+V W + I  Y       +AL L  +M    + P  IT +G++ AC     
Sbjct: 165 LFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLAS 224

Query: 220 ---AHA--GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
              AH   G++  G  F+N +    A+E        +++L  + G +  A K V D   E
Sbjct: 225 FQLAHIVHGIITTG-FFYNQL---LAVETA------LIDLYVKCGSLTYARK-VFDGMQE 273

Query: 275 PDSVLWGTLLGACRLHG 291
            + + W  ++    +HG
Sbjct: 274 RNIITWSAMISGYGMHG 290



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K G +  AR +FD M+E++++ W+ MI GY  HG   EAL LF +M A  V+
Sbjct: 249 TALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VK 307

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ +T V++LSAC   G +  G    + +     +    +    ++++  + G L +A  
Sbjct: 308 PDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACD 367

Query: 165 VFDRVNDK-DVVVWNSMIVGYAMH 187
             +R+  + +  VW +++    +H
Sbjct: 368 FIERMPVRPNAAVWGALLGACRIH 391



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML   ++P+  T   ++ AC  +   E G  IH  +      +  V +  +LI MY KC 
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKF-GYQSQVFISNSLITMYGKCD 59

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             + +R VFD + DK+ V W+++I         K+   LF +M     +PS    +  + 
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM- 118

Query: 218 ACAHAG---------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           AC  +          +V  G  F  +++   A             + +R G+VE A KL 
Sbjct: 119 ACVRSHEEADDVYRVVVENGLDFDQSVQSAAA------------GMFARCGRVEVARKL- 165

Query: 269 MDMKIEPDSVLWGTLLGA 286
            D  +  D V W T + A
Sbjct: 166 FDGIMSKDLVTWATTIEA 183


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/476 (43%), Positives = 303/476 (63%), Gaps = 25/476 (5%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VS SL+ +YA+  ++ SAE +F  M ++ +VS T+M+T Y++ G VA AR  FD M EK+
Sbjct: 408 VSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKN 467

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIH 130
           V+ WN M+  Y QHG   + L +++ ML+E+ V P+ VT V +   C  +GA + G  I 
Sbjct: 468 VITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQI- 526

Query: 131 SYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
                 R +KV    +  V  A+I MYSKCG + +AR VFD +N KD+V WN+MI GY+ 
Sbjct: 527 ----IGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG GK A+++F+++ +   KP  I+++ +LS C+H+GLV EG+ +F+ MK  + I P +E
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLE 642

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           H+ CMV+LL RAG + EA  L+ DM ++P + +WG LL AC++HGN  L E  A+++   
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFEL 702

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           +  +SG+Y+L++ IYA  G  D  A++R LM++KG++K PG S +E+ NKVH F A D+ 
Sbjct: 703 DSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVS 762

Query: 367 HPKSKEIYMMLEEINGWLKAEGYV--PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
           HP+   I   L+E+   +   GYV    T+  +H             HSEKLAVAFGL++
Sbjct: 763 HPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIH-------------HSEKLAVAFGLMT 809

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
                 I I+KNLR+C DCH V KLIS  TGR+ ++RD  RFHHF  G+CSCGDYW
Sbjct: 810 LPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 172/345 (49%), Gaps = 9/345 (2%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V+ +LVD++ R G V  A +LF  + + ++    +ML  Y K   V  A  
Sbjct: 166 KFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALE 225

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M E+DVV WN+M+   +Q G   EAL +   M ++ V  +  T  + L+AC ++ +
Sbjct: 226 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 285

Query: 123 LESGRWIHSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L  G+ +H+ +   RN+  ++  V +AL+ +Y+K G  K+A+ VF+ ++D++ V W  +I
Sbjct: 286 LRWGKQLHAQV--IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G+  +G   ++++LFN+M    +         L+S C     +  GR+  +       I
Sbjct: 344 SGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +  V     ++++ ++   ++ A  +   M  E D V W +++ A    GN+A   K  E
Sbjct: 404 QAVVVS-NSLISMYAKCDNLQSAEAIFRFMN-EKDIVSWTSMITAYSQVGNVA---KARE 458

Query: 302 YLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE 345
           +    +  N  T+  +   Y   G   DG+   + ++ E+ V+ +
Sbjct: 459 FFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 503



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 57/335 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A +L    +   ++++   ML  YAK G ++ A
Sbjct: 31  VAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDA 90

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE----PNEVTAVAVLSA 116
             LF  M  +DV  WN ++ GY Q   + + LV     L+        PN  T    + +
Sbjct: 91  VELFGRMPARDVASWNTLMSGYFQ---SRQYLVSLETFLSMHRSGDSWPNAFTLACAMKS 147

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           CG +G       + + ++   + + + +V  AL++M+ +CG++  A  +F R+ +  +  
Sbjct: 148 CGALGWHSLALQLLAMVQKFDS-QDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 177 WNSMIVGYAMHGFGKD-ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            NSM+ GY +  +G D AL+LF+ M      P                            
Sbjct: 207 RNSMLAGY-VKTYGVDHALELFDSM------P---------------------------- 231

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGN 292
                 E  V  +  MV+ LS++G+V EA  +V+DM+   +  DS  + + L AC    +
Sbjct: 232 ------ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 285

Query: 293 IALGEKIAEYLISQNLANSGTYV--LLSNIYAAIG 325
           +  G+++   +I +NL +   YV   L  +YA  G
Sbjct: 286 LRWGKQLHAQVI-RNLPHIDPYVASALVELYAKSG 319



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 32/189 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  D  V+ +++ +Y++ G +L A K+F  +  + +VS   M+T Y         
Sbjct: 530 TVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY--------- 580

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                 +QHG+  +A+ +F  +L    +P+ ++ VAVLS C   
Sbjct: 581 ----------------------SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G ++ G++    ++ + NI   ++  + ++++  + G L +A+ + D +  K    VW +
Sbjct: 619 GLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGA 678

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 679 LLSACKIHG 687


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/474 (42%), Positives = 315/474 (66%), Gaps = 8/474 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           + +V T+L+D+YA+ G + +A ++F  +   R+ V+   M++ Y + G + +AR LF+ M
Sbjct: 294 NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESG 126
             ++VV WN MI GYAQ+G +  A+ LF+ M+ A+K+ P+EVT V+V+SACG +GALE G
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
            W+  ++  ++ IK+++    A+I MYS+CGS++DA+ VF  +  +DVV +N++I G+A 
Sbjct: 414 NWVVRFLTENQ-IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 472

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G +A+ L + M    ++P  +TFIG+L+AC+HAGL+ EGR+ F ++KD     P ++
Sbjct: 473 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAID 527

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY CMV+LL R G++E+A + +  M +EP + ++G+LL A R+H  + LGE  A  L   
Sbjct: 528 HYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFEL 587

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              NSG ++LLSNIYA+ G W  V R+R  MK+ GV+K  G S +E   K+H+F+  D  
Sbjct: 588 EPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRS 647

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           H +S +IY +L E+   ++  GY+     VL D+ E++K+  +  HSEKLA+ + L+ ++
Sbjct: 648 HERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSE 707

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            G  I++VKNLRVC DCH   K+ISK  GR I++RD NRFH F +G CSC DYW
Sbjct: 708 AGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 175/364 (48%), Gaps = 83/364 (22%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEK------------------------------ 31
           +K     D +V  +++D+YAR G +  A K                              
Sbjct: 122 LKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQ 181

Query: 32  ---LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
              LF  MP+R++++ T M+T YAK  ++ AAR  FD M E+ VV WN M+ GYAQ+GLA
Sbjct: 182 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLA 241

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----ALESGRWIHSYIENSRNIKVNVQ 144
            E L LF  M+   +EP+E T V V+SAC   G    A    R +H      + I++N  
Sbjct: 242 EEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH-----QKQIQLNCF 296

Query: 145 VGTALINMYSKCGSLKDARLVFD-------------------RVND-------------K 172
           V TAL++MY+KCGS+  AR +FD                   RV +             +
Sbjct: 297 VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGR 356

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGR-- 229
           +VV WNSMI GYA +G    A++LF EM    +L P ++T + ++SAC H G +  G   
Sbjct: 357 NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV 416

Query: 230 -RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
            RF      E  I+  +  +  M+ + SR G +E+A ++  +M    D V + TL+    
Sbjct: 417 VRFLT----ENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFA 471

Query: 289 LHGN 292
            HG+
Sbjct: 472 AHGH 475



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 128/302 (42%), Gaps = 44/302 (14%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D +V   L+     GG    A  L       + V    ++  YA+ G +  AR +FD++ 
Sbjct: 99  DAFVYPILIKSAGNGGIGFHAHVLKLGHGSDAFVR-NAVIDMYARLGPIGHARKVFDEIP 157

Query: 69  --EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
             E+ V  WN M+ GY +     +A  LF       V P                     
Sbjct: 158 DYERKVADWNAMVSGYWKWESEGQAQWLF------DVMPER------------------- 192

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
                          NV   TA++  Y+K   L+ AR  FD + ++ VV WN+M+ GYA 
Sbjct: 193 ---------------NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQ 237

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G  ++ L+LF+EM    ++P + T++ ++SAC+  G          T+  +  I+    
Sbjct: 238 NGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK-QIQLNCF 296

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
               ++++ ++ G +  A ++  ++    +SV W  ++ A    GN+    ++   +  +
Sbjct: 297 VRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGR 356

Query: 307 NL 308
           N+
Sbjct: 357 NV 358


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/447 (45%), Positives = 279/447 (62%), Gaps = 23/447 (5%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +   +T Y K G V  A+ LFD+M  K ++ WN M+ GYAQ+GLA   L L+R M    V
Sbjct: 190 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 249

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+ VT V VLS+C  +GA   G  +   I+ S     N  +  ALINMY++CG+L  A+
Sbjct: 250 HPDPVTLVGVLSSCANLGAQSVGHEVEFKIQAS-GFTSNPFLNNALINMYARCGNLTKAQ 308

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + ++ +V W ++I GY MHG G+ A+QLF EM R  ++P    F+ +LSAC+HAG
Sbjct: 309 AVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG 368

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L ++G  +F  MK  Y +EP  EHY CMV+LL RAG+++EA  L+  M I+PD  +WG L
Sbjct: 369 LTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGAL 428

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N+ L E   E +I     N G YVLLSNIY+   N  GV R+R +MKEK ++
Sbjct: 429 LGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 488

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+PGCS +EL  +VH F+ GD  H +S EIY +LEE+              I++ + G+ 
Sbjct: 489 KDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEA------------IIMQEFGKP 536

Query: 404 QKQNSLE----------VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
           +K N  E          VHSEKLAVAFGL++T  G  + I+KNLR+C DCH  FK++SK 
Sbjct: 537 EKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKI 596

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             R++ +RD  RFHHF NG+CSC DYW
Sbjct: 597 VHRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 9/307 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T +++ Y K   V  AR +F++     K  VC+N ++ GY  +   +EA++LFR+M  E 
Sbjct: 88  TGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEG 147

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V  N VT + ++ AC     LE G  +H           +V V    I MY KCGS+  A
Sbjct: 148 VPVNSVTLLGLIPACVSPINLELGSSLHCSTL-KYGFDSDVSVVNCFITMYMKCGSVNYA 206

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + +FD +  K ++ WN+M+ GYA +G   + L+L+  M    + P  +T +G+LS+CA+ 
Sbjct: 207 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 266

Query: 223 GLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           G  + G    F      +   P + +   ++N+ +R G + +A + V D   E   V W 
Sbjct: 267 GAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKA-QAVFDGMPERTLVSWT 323

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGT-YVLLSNIYAAIGNWDGVARVRTLMKEK 340
            ++G   +HG+  +  ++ + +I   +   GT +V + +  +  G  D       +MK +
Sbjct: 324 AIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK-R 382

Query: 341 GVQKEPG 347
             Q EPG
Sbjct: 383 NYQLEPG 389



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 120/305 (39%), Gaps = 43/305 (14%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN  +   A+     +AL L+ +ML     PN  T    L +C  +     G   H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKD 192
               +     V T LI+MY K   + +AR VF+    + K  V +N+++ GY  +    +
Sbjct: 77  KVGCV-FEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCM 251
           A+ LF +M    +  + +T +GL+ AC     +  G     +T+K  Y  +  V    C 
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK--YGFDSDVSVVNCF 193

Query: 252 VNLLSRAGQVEEAYKLV---------------------------------MDMK-IEPDS 277
           + +  + G V  A KL                                  MDM  + PD 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRT 335
           V    +L +C   G  ++G ++ E+ I  +   S  ++   L N+YA  GN      V  
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEV-EFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 312

Query: 336 LMKEK 340
            M E+
Sbjct: 313 GMPER 317


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/435 (44%), Positives = 290/435 (66%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++++ YA+ G +  AR  FD + EK+++ +N +ID YA++  + EAL LF  +  + +  
Sbjct: 416 SLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T  ++LS    IG +  G  IH+ +  S  +K+N  V  ALI+MYS+CG+++ A  V
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALISMYSRCGNIESAFQV 534

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ + D++V+ W S+I G+A HGF   AL+LF++M    ++P+ +T+I +LSAC+H GLV
Sbjct: 535 FEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLV 594

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEG + F +M  E+ + P++EHY CMV++L R+G + EA + +  M  + D+++W T LG
Sbjct: 595 NEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLG 654

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+HGN+ LG+  A+ +I Q   +   Y+LLSN+YA+   WD V+ +R  MKEK + KE
Sbjct: 655 ACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKE 714

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
            GCS +E+ NKVH+F  GD  HPK+ EIY  L+ ++  +K  GYVP    VLHD+ E+QK
Sbjct: 715 AGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQK 774

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSEK+AVAFGLIST     I++ KNLR+C DCH+  K IS  TGR+I++RD NR
Sbjct: 775 EKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANR 834

Query: 466 FHHFVNGTCSCGDYW 480
           FHH  +G CSC +YW
Sbjct: 835 FHHIKDGRCSCNEYW 849



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 17/306 (5%)

Query: 47  MLTCYAK---QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH-GLANEALVLFRRMLAEK 102
           ++  YAK    G + AAR +FD + + +V  W  MI GY Q  G   EAL LFR M+   
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN  T  + L AC  + AL  G  + ++        VN  V  +LI+MY++ G + DA
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC-VANSLISMYARSGRIDDA 430

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R  FD + +K+++ +N++I  YA +   ++AL+LFNE+    +  S  TF  LLS  A  
Sbjct: 431 RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASI 490

Query: 223 GLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           G + +G +     +K    +   V     ++++ SR G +E A+++  DM+ + + + W 
Sbjct: 491 GTIGKGEQIHARVIKSGLKLNQSV--CNALISMYSRCGNIESAFQVFEDME-DRNVISWT 547

Query: 282 TLLGACRLHG----NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTL 336
           +++     HG     + L  K+ E  +  NL    TY+ + +  + +G   +G    +++
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNLV---TYIAVLSACSHVGLVNEGWKHFKSM 604

Query: 337 MKEKGV 342
             E GV
Sbjct: 605 YTEHGV 610



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 54  QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
           +G++ +A  +F+ M E++ V W +MI    Q G A EA+ LF  M+    EP+  T   V
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDARLVFDRVN 170
           +SAC  +  L  G+ +HS       + ++  VG  LINMY+KC   GS+  AR +FD++ 
Sbjct: 278 ISACANMELLLLGQQLHSQAIR-HGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 171 DKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           D +V  W +MI GY    G+ ++AL LF  M    + P+  TF   L ACA+   +  G 
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + F      +A++       C+ N L    +R+G++++A K   D+  E + + + T++ 
Sbjct: 397 QVFT-----HAVKLGFSSVNCVANSLISMYARSGRIDDARK-AFDILFEKNLISYNTVID 450

Query: 286 A 286
           A
Sbjct: 451 A 451



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQ 84
            L  EKL  +  Q   V+L ++++ Y+K G+   A  +F  M   +D++ W+ M+  +A 
Sbjct: 86  TLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFAN 145

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + +   AL+ F  M+     PNE    A   AC     +  G  I  ++  +  ++ +V 
Sbjct: 146 NNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC 205

Query: 145 VGTALINMYSKC-GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
           VG  LI+M+ K  G L  A  VF+++ +++ V W  MI      G+  +A+ LF EM   
Sbjct: 206 VGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILS 265

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRF 231
             +P   T  G++SACA+  L+  G++ 
Sbjct: 266 GYEPDRFTLSGVISACANMELLLLGQQL 293



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 42/221 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L  +  V  +L+ +Y+R G++ SA ++F  M  R+++S T+++T +AK        
Sbjct: 504 IKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK-------- 555

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG A +AL LF +ML E V PN VT +AVLSAC  +G
Sbjct: 556 -----------------------HGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVG 592

Query: 122 ALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
            +  G W H   +     +   ++    ++++  + GSL +A    + +  K D +VW +
Sbjct: 593 LVNEG-WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRT 651

Query: 180 MIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +    +HG    GK A ++      I  +P D     LLS
Sbjct: 652 FLGACRVHGNLELGKHAAKMI-----IEQEPHDPAAYILLS 687


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/480 (42%), Positives = 293/480 (61%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +VK     D+YV  SL+D Y +   V  AE++F       LVS T+M+T YA        
Sbjct: 459 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA-------- 510

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                  Q+G   EAL LF  M   +++P+     ++L+AC  +
Sbjct: 511 -----------------------QYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 547

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A E G+ +H +I       +++  G +L+NMY+KCGS+ DA   F  + ++ +V W++M
Sbjct: 548 SAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAM 606

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A HG G+ ALQLFN+M +  + P+ IT + +L AC HAGLV E + +F +M++ + 
Sbjct: 607 IGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFG 666

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
            +P  EHY CM++LL RAG++ EA +LV  M  E ++ +WG LLGA R+H ++ LG + A
Sbjct: 667 FKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAA 726

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E L       SGT+VLL+NIYA+ G W+ VA VR LM++  V+KEPG S IE+ +KV+ F
Sbjct: 727 EMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTF 786

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           L GD  H +S+EIY  L+E++  +   GYVP  +I LHD+ + +K+  L  HSEKLAVAF
Sbjct: 787 LVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAF 846

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI+T  G  I++ KNLRVC DCH  FK I K   R+I++RD NRFHHF +G+CSCGDYW
Sbjct: 847 GLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 151/334 (45%), Gaps = 46/334 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLT------------ 49
           +K   D D + + +LVD+YA+ GD+  A  +F  + Q  +VS   ++             
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQAL 344

Query: 50  -------------------------------CYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
                                           Y+K   +  AR+ F+ + EKD++ WN +
Sbjct: 345 ELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAI 404

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           I GY+Q+    EAL LF  M  E +  N+ T   +L +   +  +   R +H     S  
Sbjct: 405 ISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS-G 463

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
              ++ V  +LI+ Y KC  ++DA  +F+     D+V + SMI  YA +G G++AL+LF 
Sbjct: 464 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFL 523

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           EM  + LKP       LL+ACA+     +G++    +  +Y     +     +VN+ ++ 
Sbjct: 524 EMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFAGNSLVNMYAKC 582

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           G +++A +   ++  E   V W  ++G    HG+
Sbjct: 583 GSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGH 615



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 5/245 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K      AR L D+  E D+V W+ +I GYAQ+GL   AL+ F  M    V+ N
Sbjct: 97  LINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T  +VL AC  +  L  G+ +H  +  S   + +V V   L+ MY+KC    D++ +F
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + +++VV WN++   Y    F  +A+ LF EM    +KP++ +   +++AC      +
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 227 EGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G+     + K  Y  +P   +   +V++ ++ G + +A  +   +K +PD V W  ++ 
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIA 332

Query: 286 ACRLH 290
            C LH
Sbjct: 333 GCVLH 337



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 187/423 (44%), Gaps = 96/423 (22%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            + D++V+ +LV +YA+  + L +++LF  +P+R++VS   + +CY +      A  LF 
Sbjct: 188 FEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFY 247

Query: 66  DM---------------------------------------EEKDVVCWNVMIDGYAQHG 86
           +M                                        + D    N ++D YA+ G
Sbjct: 248 EMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG 307

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSAC----GQIGALE----SGRWIHSYIENSRN 138
              +A+ +F ++     +P+ V+  AV++ C        ALE      R +HS +    +
Sbjct: 308 DLADAISVFEKI----KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMK-MD 362

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
           ++ ++ V   L++MYSKC  L+DAR+ F+ + +KD++ WN++I GY+ +    +AL LF 
Sbjct: 363 MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 422

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRR---------------FFNTMKDEYAIEP 243
           EM +  +  +  T   +L + A   +V+  R+                 N++ D Y    
Sbjct: 423 EMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS 482

Query: 244 KVE---------------HYGCMVNLLSRAGQVEEAYKLVM---DMKIEPDSVLWGTLLG 285
            VE                +  M+   ++ GQ EEA KL +   DM+++PD  +  +LL 
Sbjct: 483 HVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLN 542

Query: 286 ACRLHGNIALGEKIAEYLISQNL------ANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           AC        G+++  +++           NS     L N+YA  G+ D   R  + + E
Sbjct: 543 ACANLSAFEQGKQLHVHILKYGFVLDIFAGNS-----LVNMYAKCGSIDDAGRAFSELTE 597

Query: 340 KGV 342
           +G+
Sbjct: 598 RGI 600



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  V+   +LS C    +L  G  IH++I  S  +  +  +   LIN+YSKC     AR 
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS-GLSDDPSIRNHLINLYSKCRXFGYARK 112

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           + D  ++ D+V W+++I GYA +G G  AL  F+EM  + +K ++ TF  +L AC+
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/463 (43%), Positives = 294/463 (63%), Gaps = 2/463 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAA 59
            VK     DL+V  +LV  Y   GDV +  ++F  +P+ R +++   +L  Y + G +  
Sbjct: 172 AVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTV 231

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD+M  +D + W+ ++ GY +      AL +FR M+ + V PN+   V  LSA  +
Sbjct: 232 AREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAAR 291

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+++H+ ++ S  + V + VG AL++MY+KCG +  AR VFD +  +DV  WN+
Sbjct: 292 LGLLEHGKFVHNVVQRS-GMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNA 350

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G+DA++LF       L P+++TF+G+L+ C+ +GLV EGRR+F  + ++Y
Sbjct: 351 MICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKY 410

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IEP++EHYGCMV+LL RAG V EA +L+  M I PD VLWGT+L +C+ HG + LG  +
Sbjct: 411 RIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSV 470

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  +  +SG YVLLS IYA    WD V  VR LM  +G  K  G S +E   KVH+
Sbjct: 471 GNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHK 530

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD  H  S +IY  L+ IN  L   GYVP    VLHDIGE++K ++++VHSE+LA+A
Sbjct: 531 FLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIA 590

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +G I  + G+ I+IVKNLRVC DCH   K+++    R+I++RD
Sbjct: 591 YGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRD 633


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/483 (43%), Positives = 296/483 (61%), Gaps = 5/483 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L  D +V ++L+D+Y +         +F  M +  + +   ++T  ++ G V  A
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295

Query: 61  RVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
             +F   +  D  VV W  MI   +Q+G   EAL LFR M  E V+PN VT   +L ACG
Sbjct: 296 LEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACG 355

Query: 119 QIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
            I AL  G+  H +  + RN I  +V VG+ALI+MY+KCG +  +RL FD + ++++V W
Sbjct: 356 NIAALLHGKAAHCF--SLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSW 413

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           NS++ GYAMHG   +A+ +F  M R   KP  ++F  +LSAC   GL  EG  +F++M  
Sbjct: 414 NSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSR 473

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            + +E ++EHY CMV LL R+G++EEAY ++  M  EPDS +WG LL +CR+H  + LGE
Sbjct: 474 NHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGE 533

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A+ +      N G Y+LLSNIYA+   W  V  VR +M+ +G++K PG S IE+ NKV
Sbjct: 534 IAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKV 593

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H  LAGD  HP+  +I   L ++   +K  GYVP T  VL D+ E+ K+  L  HSEKLA
Sbjct: 594 HMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLA 653

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           V  GL++T+PG  ++++KNLR+C DCHAV K IS F  R+I +RD NRFH F  G CSCG
Sbjct: 654 VVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCG 713

Query: 478 DYW 480
           DYW
Sbjct: 714 DYW 716



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           +F  ML + + P+      V+  C  + AL++G+ +H +   S  + ++  V ++L++MY
Sbjct: 61  VFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVS-GLGLDSVVLSSLLHMY 119

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
            +   LKDAR VFD++    VV  +++I  +A  G  K+  +LF +   + ++ + +++ 
Sbjct: 120 VQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWN 179

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDE 238
           G++S    +G   +    F  M  E
Sbjct: 180 GMISGFNRSGSYLDAVLMFQNMHLE 204


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/436 (45%), Positives = 288/436 (66%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y + G +  A  +F+ +E KDVV W  MI  Y  +GLAN+AL +F  M    +EP
Sbjct: 401 TIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEP 460

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT V++LSA   +  L+ G+ IH +I   +   +   +   L++MY++CGS++DA  +
Sbjct: 461 DYVTLVSILSAVCSLSTLKKGKEIHGFIIR-KGFILEGSISNTLVDMYARCGSVEDAYKI 519

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F    ++++++W +MI  Y MHG+G+ A++LF  M   ++ P  ITF+ LL AC+H+GLV
Sbjct: 520 FTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLV 579

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEG+ F   MK EY +EP  EHY C+V+LL R   +EEAY++V  M+ EP   +W  LLG
Sbjct: 580 NEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLG 639

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+H N  +GE  AE L+  +L N G YVL+SN++AA G W  V  VR  MK  G+ K 
Sbjct: 640 ACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKN 699

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQ 404
           PGCS IE+ NK+H FL+ D  HP+  +IY  L ++   LK E GYV QT+ VLH++GE++
Sbjct: 700 PGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEE 759

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSE+LA+A+GL++T  GT I++ KNLRVC DCH+   L+S+F  R++++RD +
Sbjct: 760 KVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDAS 819

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGD+W
Sbjct: 820 RFHHFKDGMCSCGDFW 835



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 35/324 (10%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           + +++  YAK  ++  AR LFD M  + DVV WN +I  Y+ +G+  EAL LF  ML   
Sbjct: 96  VNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAG 155

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V  N  T  A L AC     ++ G  IH+ I  S  + ++V V  AL+ MY + G + +A
Sbjct: 156 VVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRV-LDVYVANALVAMYVRFGKMPEA 214

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            ++F  +  KD+V WNSM+ G+  +G   +AL+ F ++    LKP  ++ I ++ A    
Sbjct: 215 AVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRL 274

Query: 223 GLVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLLSR---------- 257
           G +  G+                  NT+ D YA    + + G   +L++           
Sbjct: 275 GYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAA 334

Query: 258 AGQVE-----EAYKLVMDMKIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           AG  +     +A +L+  +++E    D+ + G++L ACR    +   ++I  Y I   L+
Sbjct: 335 AGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS 394

Query: 310 NSGTYVLLSNIYAAIGNWDGVARV 333
           +      + ++Y   G  D   R+
Sbjct: 395 DPVLQNTIIDVYGECGIIDYAVRI 418



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 161/332 (48%), Gaps = 38/332 (11%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y + G++  A V+F ++E KD+V WN M+ G+ Q+GL +EAL  F  +    ++P
Sbjct: 200 ALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKP 259

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           ++V+ ++++ A G++G L +G+ IH+Y I+N      N+ VG  LI+MY+KC  +     
Sbjct: 260 DQVSIISIIVASGRLGYLLNGKEIHAYAIKNG--FDSNILVGNTLIDMYAKCCCMSYGGR 317

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG-LLSAC---- 219
            FD +  KD++ W +   GYA +     AL+L  ++ ++     D T IG +L AC    
Sbjct: 318 AFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQL-QMEGMDVDATMIGSILLACRGLN 376

Query: 220 -------AHAGLVNEGRR---FFNTMKDEY--------------AIEPK-VEHYGCMVNL 254
                   H   +  G       NT+ D Y              +IE K V  +  M++ 
Sbjct: 377 CLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISC 436

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
               G   +A ++   MK   +EPD V   ++L A      +  G++I  ++I +     
Sbjct: 437 YVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILE 496

Query: 312 GTYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
           G+    L ++YA  G+ +   ++ T  K + +
Sbjct: 497 GSISNTLVDMYARCGSVEDAYKIFTCTKNRNL 528



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G V  A ++FD M E+ +  WN M+ GY  +G A  AL ++R M    V  +  T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             +L ACG +  L  G  IH  +         V V  +L+ +Y+KC  +  AR +FDR+ 
Sbjct: 62  PVLLKACGIVEDLFCGAEIHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 171 DK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
            + DVV WNS+I  Y+ +G   +AL LF+EM +  +  +  TF   L AC  +  +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 230 RFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +     +K    ++  V +   +V +  R G++ EA  +  +++   D V W ++L
Sbjct: 181 QIHAAILKSGRVLDVYVAN--ALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSML 233



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY KCGS+ DA ++FD+++++ +  WN+M+ GY  +G    AL+++ EM  + +     T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F  LL AC     +  G    + +  +Y  +  V     +V L ++   +  A KL   M
Sbjct: 61  FPVLLKACGIVEDLFCGAE-IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 272 KIEPDSVLWGTLLGA 286
            +  D V W +++ A
Sbjct: 120 YVRNDVVSWNSIISA 134



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 32/177 (18%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +S +LVD+YAR G V  A K+F     R+L+  T M++ Y                    
Sbjct: 499 ISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAY-------------------- 538

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                        HG    A+ LF RM  EK+ P+ +T +A+L AC   G +  G+    
Sbjct: 539 -----------GMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLE 587

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
            ++    ++   +  T L+++  +   L++A ++V    N+    VW +++    +H
Sbjct: 588 IMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIH 644


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/477 (42%), Positives = 303/477 (63%), Gaps = 3/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            DK  +V  SL+  Y   GDV +A K+F  M  + ++S T+++  Y++  ++ +A  +F 
Sbjct: 189 FDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFA 248

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
               KD+V W  M+ GYAQ+ +  +AL  F +M    +  +EV+    +SAC Q+GA++ 
Sbjct: 249 LCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKR 308

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
             W+    E +  +  NV VG+ L++MY+KCG + +AR VF+ ++DK+V  ++SMIVG A
Sbjct: 309 AAWVQEIAERN-GLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLA 367

Query: 186 MHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            HG   D + LFN+M R   ++P+ +TFIG+L+AC+HAG+V EGR +F  MKD Y I P 
Sbjct: 368 SHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPS 427

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV+LL+R+G V EA  LV  M +EP   +WG LLGACR+HGN  + +  AE+L 
Sbjct: 428 ADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLF 487

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK-VHEFLAG 363
                  G YVLLSN  A+ G WD V+++R LM+ +G++K+P  S  E  +  VH+F AG
Sbjct: 488 RLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAG 547

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP   EI   L E+   L   GYVP    V++++ E++K+  L  HSEKLA++FGL+
Sbjct: 548 DNTHPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLL 607

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + +  +SI+IVKNLR+C DCH   +L+SK    +I++RD  RFHHF +G CSCG +W
Sbjct: 608 TLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/428 (45%), Positives = 288/428 (67%), Gaps = 1/428 (0%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVA 112
           + GE+  A V+  +M+E+ +  WNV+I+GY  HG + EAL  ++R+  E +  ++VT ++
Sbjct: 261 ETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFIS 320

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           VL+AC    +L  G+ IHS       +  +V V  AL NMYSKCGS+++AR +FD +  +
Sbjct: 321 VLNACTSSTSLAEGKMIHSNAVEC-GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR 379

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
             V WN M+  YA HG  ++ L+L  +M +  +K + ITF+ +LS+C+HAGL+ EG ++F
Sbjct: 380 SAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYF 439

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +++  +  IE K EHYGC+V+LL RAG+++EA K +  M  EP+ V W +LLGACR+H +
Sbjct: 440 HSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKD 499

Query: 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIE 352
           +  G+  A  L+  +  NS   V+LSNIY+  G+W   A++R  M  + V+K PG SSI+
Sbjct: 500 LDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQ 559

Query: 353 LSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVH 412
           + NKVHEF   D  HP++ EIY  +EE+   ++  GYVP T++VLHD+ E+QK++ L  H
Sbjct: 560 VKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYH 619

Query: 413 SEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           SEKLA+AFGLIST   +S+ I KNLRVC DCH   K ISK TGR+I++RD +RFHHF +G
Sbjct: 620 SEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDG 679

Query: 473 TCSCGDYW 480
           +CSC DYW
Sbjct: 680 SCSCKDYW 687



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K G +  AR +FD M  + V  WN MI  Y+    + EA  +F+RM  E   
Sbjct: 49  TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGER 108

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            + VT +++L AC     L+ G+ +   I  + + ++++ VGTALI MY++C S ++A  
Sbjct: 109 CDRVTFLSILDACVNPENLQHGKHVRESISET-SFELDLFVGTALITMYARCRSPENAAQ 167

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF R+  K+++ W+++I  +A HG   +AL+ F  M +  + P+ +TFI LL+       
Sbjct: 168 VFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG 227

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR--AGQVEEAYKLVMDMKIEPDSVLWGT 282
           + E  R  + +  E+ ++        +VN+  R   G+++ A  ++ +M  E     W  
Sbjct: 228 LEELSR-IHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNV 285

Query: 283 LLGACRLHG 291
           L+    LHG
Sbjct: 286 LINGYTLHG 294



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 5/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++T YA+      A  +F  M++K+++ W+ +I  +A HG   EAL  FR M  E + 
Sbjct: 150 TALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 209

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC--GSLKDA 162
           PN VT +++L+       LE    IH  I     +     +  AL+N+Y +C  G L  A
Sbjct: 210 PNRVTFISLLNGFTTPSGLEELSRIHLLI-TEHGLDDTTTMSNALVNVYGRCETGELDVA 268

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            ++   ++++ +  WN +I GY +HG  ++AL+ +  +    +    +TFI +L+AC  +
Sbjct: 269 EVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSS 328

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
             + EG +  ++   E  ++  V     + N+ S+ G +E A ++   M I   +V W  
Sbjct: 329 TSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNG 386

Query: 283 LLGACRLHG 291
           +L A   HG
Sbjct: 387 MLQAYAQHG 395



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 8/248 (3%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML E V+ N +T + VL++     AL  G++IHS +  S +  ++V V TAL+N Y+KCG
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEH-SLDVFVNTALVNTYTKCG 59

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           SL DAR VFD +  + V  WNSMI  Y++     +A  +F  M     +   +TF+ +L 
Sbjct: 60  SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILD 119

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC +   +  G+    ++  E + E  +     ++ + +R    E A ++   MK + + 
Sbjct: 120 ACVNPENLQHGKHVRESI-SETSFELDLFVGTALITMYARCRSPENAAQVFGRMK-QKNL 177

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWDGVARVR 334
           + W  ++ A   HG+   GE +  + + Q    L N  T++ L N +      + ++R+ 
Sbjct: 178 ITWSAIITAFADHGHC--GEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIH 235

Query: 335 TLMKEKGV 342
            L+ E G+
Sbjct: 236 LLITEHGL 243



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 6/147 (4%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +LT M   Y+K G +  AR +FD M  +  V WN M+  YAQHG + E L L R+M  E 
Sbjct: 355 ALTNM---YSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEG 411

Query: 103 VEPNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           V+ N +T V+VLS+C   G +  G ++ HS + + R I+V  +    L+++  + G L++
Sbjct: 412 VKLNGITFVSVLSSCSHAGLIAEGCQYFHS-LGHDRGIEVKTEHYGCLVDLLGRAGKLQE 470

Query: 162 ARLVFDRV-NDKDVVVWNSMIVGYAMH 187
           A     ++ ++ ++V W S++    +H
Sbjct: 471 AEKYISKMPSEPEIVTWASLLGACRVH 497


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/479 (41%), Positives = 306/479 (63%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
           L+ DL+   SL+   AR   +   +++  +M +           ++++ Y + G++  A+
Sbjct: 498 LEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAK 557

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           + FD+MEEK++VCWN MI+G++Q+    +AL +F +ML+ K+ P+E++ +  L AC Q+ 
Sbjct: 558 LFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVS 617

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G+ +H +   S ++  +  V  +LI+MY+KCG ++ ++ +FDRV+ K  V WN +I
Sbjct: 618 ALRLGKELHCFAVKS-HLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLI 676

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY +HG G+ A++LF  M     +P  +TFI LL+AC HAGLV EG  +   M+  + I
Sbjct: 677 TGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGI 736

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +PK+EHY C+V++L RAG++ EA +LV ++  +PDS +W +LL +CR + ++ +GEK+A 
Sbjct: 737 KPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVAN 796

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+      +  YVL+SN YA +G WD V ++R  MKE G+QK+ GCS IE+  KV  FL
Sbjct: 797 KLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFL 856

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD    +S +I     E+   +   GY P T  VLH++ E +K   L  HSEKLA++FG
Sbjct: 857 VGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFG 916

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T  GT++++ KNLR+C DCH   KL+SK   R+I++RD  RFHHF NG CSCGDYW
Sbjct: 917 LLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 10/246 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKV 103
           +++L  Y+K G +  ARVLFD   EK+V+ WN MI GY++      A  L R+M + +KV
Sbjct: 338 SSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           + NEVT + VL  C +       + IH Y      I+ +  V  A +  Y+KCGSL  A 
Sbjct: 397 KVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAE 456

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  +  K V  WN++I G+  +GF + AL L+  M    L+P   T   LLSACA   
Sbjct: 457 GVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLK 516

Query: 224 LVNEGRRFFNTM-KDEYAIEPKVEHYGC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            ++ G+    +M ++ +    +++ + C  +V+L  + G++  A KL  D   E + V W
Sbjct: 517 SLSCGKEIHGSMLRNGF----ELDEFICISLVSLYVQCGKILLA-KLFFDNMEEKNLVCW 571

Query: 281 GTLLGA 286
            T++  
Sbjct: 572 NTMING 577



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 130/261 (49%), Gaps = 11/261 (4%)

Query: 32  LFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
             +T P  Q  +V +T ++T Y+       + ++F+    K++  WN ++ GY ++ L  
Sbjct: 118 FISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFR 177

Query: 90  EALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           +A+ +F  M++  +  P+  T   V+ AC  +  +  G  +H +   ++ +  +V VG A
Sbjct: 178 DAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTK-VLSDVFVGNA 236

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LK 206
           LI MY K G ++ A  VFD++  +++V WNS++     +G  +++  LF  +      L 
Sbjct: 237 LIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLM 296

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           P   T + ++  CA  G V  G  F    +K     E KV     ++++ S+ G + EA 
Sbjct: 297 PDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN--SSLLDMYSKCGYLCEA- 353

Query: 266 KLVMDMKIEPDSVLWGTLLGA 286
           +++ D   E + + W +++G 
Sbjct: 354 RVLFDTN-EKNVISWNSMIGG 373



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 12/193 (6%)

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P ++  + +L  CG+   +E GR IH++I  S + + +V + T L+ MYS C S  D+ 
Sbjct: 91  KPKQLIGL-LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSC 149

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHA 222
           LVF+    K++ +WN+++ GY  +   +DA+ +F EM  +    P + T   ++ AC   
Sbjct: 150 LVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGV 209

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
             V  G          +A++ KV         ++ +  + G VE A K V D   + + V
Sbjct: 210 YDVRLGEAVHG-----FALKTKVLSDVFVGNALIAMYGKFGFVESAVK-VFDKMPQRNLV 263

Query: 279 LWGTLLGACRLHG 291
            W +++ AC  +G
Sbjct: 264 SWNSVMYACLENG 276


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 285/437 (65%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y+K      A  +F  +++KDVV W+ M+  YAQ G ++ A  +F +M    ++
Sbjct: 443 TALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLK 502

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  +V+ AC    A ++ GR  H+ I         + V +AL++MY++ GS++ A+
Sbjct: 503 PNEFTISSVIDACASPTAGVDLGRQFHA-ISIKHRCHDALCVSSALVSMYARKGSIESAQ 561

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+R  D+D+V WNSM+ GYA HG+ + AL +F +M    ++   +TF+ ++  CAHAG
Sbjct: 562 CIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAG 621

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+R+F++M  +Y I P +EHY CMV+L SRAG+++EA  L+  M      ++W TL
Sbjct: 622 LVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTL 681

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N+ LG+  AE L+S    +S TYVLLSNIY+A G W     VR LM  K V+
Sbjct: 682 LGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVK 741

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS I++ NKVH F+A D  HP S++IY  L  +   LK EGY P T   LH++ E+
Sbjct: 742 KEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEE 801

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L +HSE+LA+AFGLI+T PG  + I KNLRVC DCH V K++SK   R+I+MRD 
Sbjct: 802 QKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDC 861

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFHHF +G CSCGD+W
Sbjct: 862 SRFHHFNSGVCSCGDFW 878



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 145/279 (51%), Gaps = 19/279 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K   V   R +F+ M +++VV W  ++ GY Q G  ++ + LF RM AE V 
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLK 160
           PN VT  +VLS     G ++ GR +H+     +++K      V V  +L+NMY+KCG ++
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHA-----QSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +AR+VF  +  +D+V WN+++ G  ++G   +ALQLF++        +  T+  ++  CA
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYG----CMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +   +   R+  +++     ++     YG     +++  S+AGQ+  A  + + M    +
Sbjct: 318 NIKQLGLARQLHSSV-----LKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQN 372

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTY 314
            V W  ++  C  +G++ L   +   +    +A N  TY
Sbjct: 373 VVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTY 411



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 29  AEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYA 83
           A +L +++ +R   S    +T ++  Y+K G++  A  +F  M   ++VV W  MI+G  
Sbjct: 325 ARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCI 384

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
           Q+G    A  LF RM  + V PN+ T   +L+A   + +L     IH+ +  + N +   
Sbjct: 385 QNGDVPLAAALFSRMREDGVAPNDFTYSTILTA--SVASLPP--QIHAQVIKT-NYECTS 439

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            VGTAL+  YSK  + ++A  +F  ++ KDVV W++M+  YA  G    A  +F +M   
Sbjct: 440 IVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMH 499

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            LKP++ T   ++ ACA      +  R F+ +  ++     +     +V++ +R G +E 
Sbjct: 500 GLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIES 559

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           A + + + + + D V W ++L     HG
Sbjct: 560 A-QCIFERQTDRDLVSWNSMLSGYAQHG 586



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF---RRMLAEKVEPNEVTAVA 112
           +   AR  FD++  ++ +  +  +  +A+ G  ++AL  F    R    +V    +  V 
Sbjct: 53  DATGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGAL--VG 108

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           VL  CG +     G+ +H       + + +V VGT+L++MY K  S+ D R VF+ +  +
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           +VV W S++ GY   G   D ++LF  M    + P+ +TF  +LS  A  G+V+ GRR  
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRR-V 227

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +    ++     V     ++N+ ++ G VEEA  +   M+   D V W TL+    L+G+
Sbjct: 228 HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLMAGLVLNGH 286



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K      L VS++LV +YAR G + SA+ +F     R LVS  +ML+ Y         
Sbjct: 532 SIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGY--------- 582

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                 AQHG + +AL +FR+M AE +E + VT ++V+  C   
Sbjct: 583 ----------------------AQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHA 620

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G +E G+     +     I   ++    ++++YS+ G L +A  + + ++     +VW +
Sbjct: 621 GLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRT 680

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 681 LLGACKVH 688


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/458 (45%), Positives = 291/458 (63%), Gaps = 4/458 (0%)

Query: 25  DVLSAEKLFATMPQRSLVSLT-TMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGY 82
           +V    +L   +   S VS+T  ++T YAK      A  +F+++  +K  + WN MI G+
Sbjct: 238 EVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGF 297

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
            Q+    +A  LF RM  E V P+  T V+V+ A   I      RWIH Y      +  +
Sbjct: 298 TQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGY-SIRHQLDQD 356

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V TALI+MYSKCG +  AR +FD   D+ V+ WN+MI GY  HGFG+ A++LF EM  
Sbjct: 357 VYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKG 416

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
               P++ TF+ +L+AC+HAGLV+EG+++F +MK +Y +EP +EHYG MV+LL RAG+++
Sbjct: 417 TGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLD 476

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
           EA+  + +M IEP   ++G +LGAC+LH N+ L E+ A+ +          +VLL+NIYA
Sbjct: 477 EAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYA 536

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
               W  VARVRT M++KG+QK PG S I+L N+VH F +G   H  +K+IY  L ++  
Sbjct: 537 NASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIE 596

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPD 442
            +K  GYVP T  + HD+ +  K   L  HSEKLA+A+GLI T PGT+I+I KNLRVC D
Sbjct: 597 EIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCND 655

Query: 443 CHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           CH   KLIS  TGR+I+MRD  RFHHF +G CSCGDYW
Sbjct: 656 CHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFD 65
           L   T+L+ L A   D+ +   + A +  R L S     T +   Y K    A AR +FD
Sbjct: 16  LRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFD 75

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACGQIGAL 123
            M  +D V WN ++ GYA++GL + A+    RM  E+    P+ VT V+VL AC    AL
Sbjct: 76  RMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARAL 135

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
            + R +H++   +  +   V V TA+++ Y KCG+++ AR VFD +  ++ V WN+MI G
Sbjct: 136 HACREVHAFALRA-GLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDG 194

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           YA +G   +A+ LF  M +  +  +D + +  L AC   G ++E RR
Sbjct: 195 YADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRR 241



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 6/237 (2%)

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           T  A+L  C     L +GR +H+ +E +R +       TAL NMY KC    DAR VFDR
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLE-ARGLASESIASTALANMYFKCRRPADARRVFDR 76

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSACAHAGLVN 226
           +  +D V WN+++ GYA +G    A++    M       +P  +T + +L ACA A  ++
Sbjct: 77  MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALH 136

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             R   +       ++  V     +++   + G VE A + V D     +SV W  ++  
Sbjct: 137 ACRE-VHAFALRAGLDELVNVSTAVLDAYCKCGAVEAA-RAVFDCMPVRNSVSWNAMIDG 194

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLS-NIYAAIGNWDGVARVRTLMKEKGV 342
              +GN      +   ++ + +  +   VL +      +G  D V RV  L+   G+
Sbjct: 195 YADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGL 251



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 31/162 (19%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD+D+YV T+L+D+Y++ G V  A +LF +   R +++   M+  Y         
Sbjct: 348 SIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGY--------- 398

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG    A+ LF  M      PNE T ++VL+AC   
Sbjct: 399 ----------------------GSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHA 436

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           G ++ G+   + ++    ++  ++    ++++  + G L +A
Sbjct: 437 GLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEA 478


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 286/448 (63%), Gaps = 4/448 (0%)

Query: 37  PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVL 94
           P   L+ +  ++  Y+K     AAR +FD +  KD  VV W V+I G AQHG ANEAL L
Sbjct: 424 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 483

Query: 95  FRRMLAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
           F +ML     V PN  T    L AC ++GAL  GR IH+Y+  +R     + V   LI+M
Sbjct: 484 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 543

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           YSK G +  AR+VFD ++ ++ V W S++ GY MHG G++ALQ+F EM ++ L P  +TF
Sbjct: 544 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTF 603

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +L AC+H+G+V++G  +FN M  ++ + P  EHY CMV+LLSRAG+++EA +L+  M 
Sbjct: 604 VVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 663

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
           ++P   +W  LL ACR++ N+ LGE  A  L+     N G+Y LLSNIYA    W  VAR
Sbjct: 664 MKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVAR 723

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
           +R LMK  G++K PGCS ++       F AGD  HP S++IY +L ++   +KA GYVP 
Sbjct: 724 IRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD 783

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
            +  LHD+ +++K + L  HSEKLA+A+G+++T PG  I+I KNLR C DCH+ F  IS 
Sbjct: 784 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISI 843

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I++RD +RFHHF NG+CSC  YW
Sbjct: 844 IIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 168/312 (53%), Gaps = 29/312 (9%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            ++  L +D++V  ++VD+YA+ G +  A K+F  M  + +VS   M+T Y++ G    A
Sbjct: 276 ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDA 335

Query: 61  RVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
             LF+ + E+    +VV W+ +I GYAQ GL  EAL +FR+ML    EPN VT V++LS 
Sbjct: 336 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSG 395

Query: 117 CGQIGALESG--------RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           C   G L  G        +WI +  EN  +   ++ V  ALI+MYSKC S K AR +FD 
Sbjct: 396 CASAGTLLHGKETHCHAIKWILNLDEN--DPGDDLMVINALIDMYSKCKSPKAARAMFDL 453

Query: 169 VNDKD--VVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSACAHAGL 224
           +  KD  VV W  +I G A HG   +AL+LF++M +    + P+  T    L ACA  G 
Sbjct: 454 IPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGA 513

Query: 225 VNEGRRFFNTMKDEYAIEPKVEH-----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +  GR+        Y +  + E        C++++ S++G V+ A ++V D   + + V 
Sbjct: 514 LRFGRQI-----HAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA-RVVFDNMHQRNGVS 567

Query: 280 WGTLLGACRLHG 291
           W +L+    +HG
Sbjct: 568 WTSLMTGYGMHG 579



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 164/372 (44%), Gaps = 87/372 (23%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAE-K 102
           +++ Y + G    AR +FD+M E+   D+V WN ++  Y Q G +  A+ +F RM  +  
Sbjct: 186 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 245

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P+ V+ V VL AC  +GA   G+ +H Y   S  +  +V VG A+++MY+KCG +++A
Sbjct: 246 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVFVGNAVVDMYAKCGMMEEA 304

Query: 163 RLVFDRVNDKDVVVWNSM-----------------------------------IVGYAMH 187
             VF+R+  KDVV WN+M                                   I GYA  
Sbjct: 305 NKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQR 364

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR----------------- 230
           G G +AL +F +M     +P+ +T + LLS CA AG +  G+                  
Sbjct: 365 GLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDP 424

Query: 231 -----FFNTMKDEYA--------------IEPK---VEHYGCMVNLLSRAGQVEEAYKLV 268
                  N + D Y+              I PK   V  +  ++   ++ G+  EA +L 
Sbjct: 425 GDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELF 484

Query: 269 MDMK-----IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIY 321
             M      + P++      L AC   G +  G +I  Y++     ++  +V   L ++Y
Sbjct: 485 SQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMY 544

Query: 322 AAIGNWDGVARV 333
           +  G+ D  ARV
Sbjct: 545 SKSGDVDA-ARV 555



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           V  WN +I      G   + L L+RRM      P+  T   VL ACG+I +   G  +H+
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHG 188
            +  S   + NV VG  L++MY +CG+ ++AR VFD + ++   D+V WNS++  Y   G
Sbjct: 170 VVFAS-GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 189 FGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
               A+++F  M   + ++P  ++ + +L ACA  G  + G++           E  V  
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFV 287

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC----RLHGNIALGEKIAEYL 303
              +V++ ++ G +EEA K+   MK++ D V W  ++       R    + L EKI E  
Sbjct: 288 GNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 346

Query: 304 ISQNL 308
           I  N+
Sbjct: 347 IELNV 351



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 31/153 (20%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L+V+  L+D+Y++ GDV +A  +F  M QR+ VS T+++T                    
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMT-------------------- 573

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                      GY  HG   EAL +F  M    + P+ VT V VL AC   G ++ G   
Sbjct: 574 -----------GYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINY 622

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            + +     +    +    ++++ S+ G L +A
Sbjct: 623 FNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEA 655


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/447 (45%), Positives = 279/447 (62%), Gaps = 23/447 (5%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +   +T Y K G V  A+ LFD+M  K ++ WN M+ GYAQ+GLA   L L+R M    V
Sbjct: 181 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 240

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+ VT V VLS+C  +GA   G  +   ++ S     N  +  ALINMY++CG+L  A+
Sbjct: 241 HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQAS-GFTSNPFLNNALINMYARCGNLTKAQ 299

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + ++ +V W ++I GY MHG G+ A+QLF EM R  ++P    F+ +LSAC+HAG
Sbjct: 300 AVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG 359

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L ++G  +F  MK  Y +EP  EHY CMV+LL RAG+++EA  L+  M I+PD  +WG L
Sbjct: 360 LTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGAL 419

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N+ L E   E +I     N G YVLLSNIY+   N  GV R+R +MKEK ++
Sbjct: 420 LGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 479

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+PGCS +EL  +VH F+ GD  H +S EIY +LEE+              I++ + G+ 
Sbjct: 480 KDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEA------------IIMQEFGKP 527

Query: 404 QKQNSLE----------VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
           +K N  E          VHSEKLAVAFGL++T  G  + I+KNLR+C DCH  FK++SK 
Sbjct: 528 EKDNREESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKI 587

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             R++ +RD  RFHHF NG+CSC DYW
Sbjct: 588 VHRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 9/307 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T +++ Y K   V  AR +F++     K  VC+N ++ GY  +   ++A++LFR+M  E 
Sbjct: 79  TGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEG 138

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V  N VT + ++ AC     LE G  +H           +V V    I MY KCGS+  A
Sbjct: 139 VPVNSVTLLGLIPACVSPINLELGSSLHCSTL-KYGFDSDVSVVNCFITMYMKCGSVNYA 197

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + +FD +  K ++ WN+M+ GYA +G   + L+L+  M    + P  +T +G+LS+CA+ 
Sbjct: 198 QKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANL 257

Query: 223 GLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           G  + G    F      +   P + +   ++N+ +R G + +A + V D   E   V W 
Sbjct: 258 GAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKA-QAVFDGMPERTLVSWT 314

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGT-YVLLSNIYAAIGNWDGVARVRTLMKEK 340
            ++G   +HG+  +  ++ + +I   +   GT +V + +  +  G  D       +MK +
Sbjct: 315 AIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK-R 373

Query: 341 GVQKEPG 347
             Q EPG
Sbjct: 374 NYQLEPG 380



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 120/305 (39%), Gaps = 43/305 (14%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN  +   A+     +AL L+ +ML     PN  T    L +C  +     G   H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKD 192
               +     V T LI+MY K   + +AR VF+    + K  V +N+++ GY  +    D
Sbjct: 68  KVGCV-FEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCM 251
           A+ LF +M    +  + +T +GL+ AC     +  G     +T+K  Y  +  V    C 
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK--YGFDSDVSVVNCF 184

Query: 252 VNLLSRAGQVEEAYKLV---------------------------------MDMK-IEPDS 277
           + +  + G V  A KL                                  MDM  + PD 
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRT 335
           V    +L +C   G  ++G ++ E+ +  +   S  ++   L N+YA  GN      V  
Sbjct: 245 VTLVGVLSSCANLGAQSVGHEV-EFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 303

Query: 336 LMKEK 340
            M E+
Sbjct: 304 GMPER 308


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/481 (43%), Positives = 303/481 (62%), Gaps = 32/481 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
            +KF    D YVS +L+ +Y+  GG+ L                                
Sbjct: 158 ALKFGFATDQYVSNTLIHMYSCFGGEFL------------------------------GD 187

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD M++  VV W+ MI GY + GL+++A+ LFR M A  V P+EVT + VL+A   
Sbjct: 188 ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAAD 247

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GALE  RW+  ++E    I  +V +  ALI+  +KCG +  A  VF  + ++ VV W S
Sbjct: 248 LGALELARWVGRFVERE-GIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTS 306

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I   AM G GK+A+ +F  M    ++P D+ FIG+L+AC+HAG+V+EG  +F++MK EY
Sbjct: 307 VIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEY 366

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGCMV++  RAG VE A + +  M ++P+ ++W TL+ ACR HG + LGE I
Sbjct: 367 GIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESI 426

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              L+++  A+   YV+LSN+YA    W   + +R  M ++G++K PGCS +EL  +VHE
Sbjct: 427 TRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHE 486

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGD  HP+ KEIYMM+EE+   LK  G++  T  VL D+ E+ K+ +L+ HSEKLA+A
Sbjct: 487 FIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIA 546

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           F L+ T PGT +++VKNLRVC DCHA  K IS    R+I++RDR+RFH F NG+CSC D+
Sbjct: 547 FVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDF 606

Query: 480 W 480
           W
Sbjct: 607 W 607



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 71  DVVCWNVMIDGYAQHGLAN---EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
           D    N +I  +A   L +    A   F  ML   V PN+ T   +L AC  +     G 
Sbjct: 92  DAFLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGF-PGV 150

Query: 128 WIHSYIENSR-NIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGY 184
            + ++    +     +  V   LI+MYS  G   L DAR VFDR++   VV W++MI GY
Sbjct: 151 GLQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGY 210

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
              G   DA+ LF EM    ++P ++T IG+L+A A      E  R+     +   I   
Sbjct: 211 VRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAA-AADLGALELARWVGRFVEREGIGKS 269

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           V     +++ L++ G V+ A  +   M+ E   V W +++ A  + G 
Sbjct: 270 VTLCNALIDALAKCGDVDGAVAVFQGME-ERTVVSWTSVIDALAMEGR 316


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 286/437 (65%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y+K G    A  +F  ++ KDVV W+ M+  Y+Q G  + A  +F +M  + ++
Sbjct: 439 TALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMK 498

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  + + AC    A ++ GR  H+ I      +  + VG+AL+ MY++ GS+  AR
Sbjct: 499 PNEFTISSAIDACASPTAGIDQGRQFHA-ISIKYRYQDAICVGSALVTMYARKGSIDSAR 557

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +VF+R  D+D+V WNSMI GYA HG+ K+AL  F +M  + ++    TF+ ++  C HAG
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAG 617

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F++M  ++ I P +EHY CMV+L SRAG+++E   L+  M     +++W TL
Sbjct: 618 LVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTL 677

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LG+  A+ L+     +S TYVLLSNIYAA G W     VR LM  K V+
Sbjct: 678 LGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVK 737

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS I++ NKVH F+A D  HP S++IY  L+ +   LK EGY P T +VLHDI E+
Sbjct: 738 KEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEE 797

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L +HSE+LA+AFGLI+T P T ++IVKNLRVC DCH V K++S    R+I+MRD 
Sbjct: 798 QKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDC 857

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFHHF  G CSCGD+W
Sbjct: 858 SRFHHFNAGACSCGDFW 874



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 151/291 (51%), Gaps = 14/291 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K G V   RV+F+ M +++VV W  ++ GY Q    ++ + LF RM AE V 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  +VLSA    GA++ GR +H+        +  V V  +LINMYSKCG +++A+ 
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQ-SVKFGCRSTVFVCNSLINMYSKCGLVEEAKA 257

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF ++  +D+V WN+++ G  ++    +ALQLF++      K S  T+  ++  CA+   
Sbjct: 258 VFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQ 317

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +   R+  +  +K  +  +  V     +++  S+ G++++A+ + + M    + V W  +
Sbjct: 318 LALARQLHSCVLKHGFHSDGNV--MTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAM 375

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTY---------VLLSNIYAAI 324
           +G C  + +I L   +   +   N+  N  TY         +LL  I+A I
Sbjct: 376 IGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQI 426



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 19/255 (7%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +T ++  Y+K GE+  A  +F  M   ++VV W  MI G  Q+     A  LF RM  + 
Sbjct: 340 MTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN 399

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGS 158
           V+PNE T   VL+A   I   +    IH+ I     IK N Q    VGTAL+  YSK G+
Sbjct: 400 VKPNEFTYSTVLTASIPILLPQ----IHAQI-----IKTNYQHAPSVGTALLASYSKLGN 450

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
            ++A  +F  ++ KDVV W++M+  Y+  G    A  +F +M    +KP++ T    + A
Sbjct: 451 TEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDA 510

Query: 219 CAH--AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA   AG +++GR+ F+ +  +Y  +  +     +V + +R G ++ A ++V + + + D
Sbjct: 511 CASPTAG-IDQGRQ-FHAISIKYRYQDAICVGSALVTMYARKGSIDSA-RIVFERQTDRD 567

Query: 277 SVLWGTLLGACRLHG 291
            V W +++     HG
Sbjct: 568 LVSWNSMISGYAQHG 582



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 120/264 (45%), Gaps = 11/264 (4%)

Query: 29  AEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN----VMIDGYA 83
           A  +F ++ P  +L S   +    A       AR   D M  +D    +    V I  Y 
Sbjct: 16  AAAVFGSLKPLSALASAARLEDDCADTCNAPGARQALDGMPSRDAAAGSSSNPVAIVDYG 75

Query: 84  QHGLA-NEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           + G    EAL  F  +    +V+   V+ V  L  CG I    SG  +H         + 
Sbjct: 76  RRGKGRGEALDHFVDVHRCGRVQGAAVSRV--LKVCGLIPDRVSGEQLHCLCVKCGFDRA 133

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
            V VGTAL++MY KCG ++D R+VF+ +  ++VV W S++ GY       D + LF  M 
Sbjct: 134 EVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMR 193

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              + P+  TF  +LSA A  G V+ GRR  +    ++     V     ++N+ S+ G V
Sbjct: 194 AEGVWPNPFTFTSVLSAVASQGAVDLGRR-VHAQSVKFGCRSTVFVCNSLINMYSKCGLV 252

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLG 285
           EEA  +   M+   D V W TL+ 
Sbjct: 253 EEAKAVFRQMETR-DMVSWNTLMA 275



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K+     + V ++LV +YAR G + SA  +F     R LVS  +M++           
Sbjct: 528 SIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMIS----------- 576

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GYAQHG + EAL  FR+M    +E +  T +AV+  C   
Sbjct: 577 --------------------GYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHA 616

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G+     +    NI   ++  + ++++YS+ G L +   L+         +VW +
Sbjct: 617 GLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRT 676

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 677 LLGACRVH 684


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/480 (42%), Positives = 293/480 (61%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +VK     D+YV  SL+D Y +   V  AE++F       LVS T+M+T YA        
Sbjct: 486 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA-------- 537

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                  Q+G   EAL LF  M   +++P+     ++L+AC  +
Sbjct: 538 -----------------------QYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 574

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A E G+ +H +I       +++  G +L+NMY+KCGS+ DA   F  + ++ +V W++M
Sbjct: 575 SAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAM 633

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A HG G+ ALQLFN+M +  + P+ IT + +L AC HAGLV E + +F +M++ + 
Sbjct: 634 IGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFG 693

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
            +P  EHY CM++LL RAG++ EA +LV  M  E ++ +WG LLGA R+H ++ LG + A
Sbjct: 694 FKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAA 753

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E L       SGT+VLL+NIYA+ G W+ VA VR LM++  V+KEPG S IE+ +KV+ F
Sbjct: 754 EMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTF 813

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           L GD  H +S+EIY  L+E++  +   GYVP  +I LHD+ + +K+  L  HSEKLAVAF
Sbjct: 814 LVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAF 873

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI+T  G  I++ KNLRVC DCH  FK I K   R+I++RD NRFHHF +G+CSCGDYW
Sbjct: 874 GLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 45/339 (13%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S   ++  YAK G++A A  +F+ +++ D+V WN +I G   H    +AL L  +M    
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSG 354

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + PN  T  + L AC  +G  E GR +HS +    +++ ++ V   L++MYSKC  L+DA
Sbjct: 355 ICPNIFTLSSALKACAGMGLKELGRQLHSSLMK-MDMESDLFVSVGLVDMYSKCDLLEDA 413

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R+ F+ + +KD++ WN++I GY+ +    +AL LF EM +  +  +  T   +L + A  
Sbjct: 414 RMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL 473

Query: 223 GLVNEGRR---------------FFNTMKDEYAIEPKVE---------------HYGCMV 252
            +V+  R+                 N++ D Y     VE                +  M+
Sbjct: 474 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 533

Query: 253 NLLSRAGQVEEAYKLVM---DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL- 308
              ++ GQ EEA KL +   DM+++PD  +  +LL AC        G+++  +++     
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 593

Query: 309 -----ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                 NS     L N+YA  G+ D   R  + + E+G+
Sbjct: 594 LDIFAGNS-----LVNMYAKCGSIDDAGRAFSELTERGI 627



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 129/244 (52%), Gaps = 11/244 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T++  YAK  E   ++ LFD++ E++VV WN +   Y Q     EA+ LF  M+   ++
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIK 255

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLK 160
           PNE +  ++++AC  +     G+ IH Y+     IK+          AL++MY+K G L 
Sbjct: 256 PNEFSLSSMVNACTGLRDSSRGKIIHGYL-----IKLGYDWDPFSANALVDMYAKVGDLA 310

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  VF+++   D+V WN++I G  +H   + AL+L  +M R  + P+  T    L ACA
Sbjct: 311 DAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACA 370

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             GL   GR+  +++  +  +E  +     +V++ S+   +E+A ++  ++  E D + W
Sbjct: 371 GMGLKELGRQLHSSLM-KMDMESDLFVSVGLVDMYSKCDLLEDA-RMAFNLLPEKDLIAW 428

Query: 281 GTLL 284
             ++
Sbjct: 429 NAII 432



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 5/245 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K      AR L D+  E D+V W+ +I GYAQ+GL   AL+ F  M    V+ N
Sbjct: 97  LINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCN 156

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T  +VL AC  +  L  G+ +H  +  S   + +V V   L+ MY+KC    D++ +F
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLF 215

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + +++VV WN++   Y    F  +A+ LF EM    +KP++ +   +++AC      +
Sbjct: 216 DEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSS 275

Query: 227 EGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G+     + K  Y  +P   +   +V++ ++ G + +A  +   +K +PD V W  ++ 
Sbjct: 276 RGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIA 332

Query: 286 ACRLH 290
            C LH
Sbjct: 333 GCVLH 337



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 34/291 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  ++ DL+VS  LVD+Y++  D+L                                AR
Sbjct: 386 MKMDMESDLFVSVGLVDMYSKC-DLLED------------------------------AR 414

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           + F+ + EKD++ WN +I GY+Q+    EAL LF  M  E +  N+ T   +L +   + 
Sbjct: 415 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 474

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +   R +H     S     ++ V  +LI+ Y KC  ++DA  +F+     D+V + SMI
Sbjct: 475 VVHVCRQVHGLSVKS-GFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 533

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             YA +G G++AL+LF EM  + LKP       LL+ACA+     +G++    +  +Y  
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGF 592

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
              +     +VN+ ++ G +++A +   ++  E   V W  ++G    HG+
Sbjct: 593 VLDIFAGNSLVNMYAKCGSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGH 642



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  V+   +LS C    +L  G  IH++I  S  +  +  +   LIN+YSKC +   AR 
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS-GLSDDPSIRNHLINLYSKCRNFGYARK 112

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           + D  ++ D+V W+++I GYA +G G  AL  F+EM  + +K ++ TF  +L AC+
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/470 (42%), Positives = 307/470 (65%), Gaps = 2/470 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+D+Y +     +A ++F  M  +++V+  +++  Y + GEV AA   F+ M EK+
Sbjct: 374 ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKN 433

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +V WN +I G  Q  L  EA+ +F  M + E V  + VT +++ SACG +GAL+  +WI+
Sbjct: 434 IVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIY 493

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            YIE +  I+++V++GT L++M+S+CG  + A  +F+ + ++DV  W + I   AM G  
Sbjct: 494 YYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNA 552

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           + A++LF++M    LKP  + F+G L+AC+H GLV +G+  F +M   + + P+  HYGC
Sbjct: 553 ERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGC 612

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           MV+LL RAG +EEA +L+ DM +EP+ V+W +LL ACR+ GN+ +    AE +       
Sbjct: 613 MVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER 672

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
           +G+YVLLSN+YA+ G W+ +A+VR  MKEKG++K PG SSI++  K HEF +GD  HP+ 
Sbjct: 673 TGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEM 732

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
             I  ML+E++      G+VP    VL D+ EK+K   L  HSEKLA+A+GLIS+  GT+
Sbjct: 733 PNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTT 792

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I+IVKNLRVC DCH+  K  SK   R+I++RD NRFH+   G CSCGD+W
Sbjct: 793 IRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 117/194 (60%), Gaps = 11/194 (5%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A+ LF    Q SLV        YA+ GE+ +AR +FD+M E++VV W  MI GYA+   A
Sbjct: 166 AKDLFV---QNSLVHF------YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216

Query: 89  NEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
            +A+ LF RM+  E+V PN VT V V+SAC ++  LE+G  ++++I NS  I+VN  + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVS 275

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL++MY KC ++  A+ +FD     ++ + N+M   Y   G  ++AL +FN M    ++P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335

Query: 208 SDITFIGLLSACAH 221
             I+ +  +S+C+ 
Sbjct: 336 DRISMLSAISSCSQ 349



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 48/309 (15%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N +I GYA  GL NEA++LF RM+   + P++ T    LSAC +  A  +G  IH  I 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                K ++ V  +L++ Y++CG L  AR VFD +++++VV W SMI GYA   F KDA+
Sbjct: 162 KMGYAK-DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220

Query: 195 QLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK----------------- 236
            LF  M R   + P+ +T + ++SACA    +  G + +  ++                 
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDM 280

Query: 237 --------------DEYAIEPKVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVL 279
                         DEY     ++    M +   R G   EA   + L+MD  + PD + 
Sbjct: 281 YMKCNAIDVAKRLFDEYG-ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQ------NLANSGTYVLLSNIYAAIGNWDGVARV 333
             + + +C    NI  G+    Y++        N+ N+     L ++Y      D   R+
Sbjct: 340 MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA-----LIDMYMKCHRQDTAFRI 394

Query: 334 RTLMKEKGV 342
              M  K V
Sbjct: 395 FDRMSNKTV 403


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/441 (47%), Positives = 288/441 (65%), Gaps = 2/441 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV    ++  Y + G V  A  +F+ +E KDVV W  MI  Y  +GLANEAL LF  M  
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 613

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP+ ++ V++LSA   + AL+ G+ IH ++   +   +   + + L++MY++CG+L+
Sbjct: 614 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIR-KGFVLEGSLASTLVDMYARCGTLE 672

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R VF+ + +KD+V+W SMI  Y MHG G+ A+ LF  M    + P  I F+ +L AC+
Sbjct: 673 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 732

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GL+NEGRRF  +MK EY +EP  EHY C+V+LL RA  +EEAY+ V  M++EP + +W
Sbjct: 733 HSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 792

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGAC++H N  LGE  A+ L+  +  N G YVL+SN+YAA   W  V  VR  MK  
Sbjct: 793 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKAS 852

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHD 399
           G++K PGCS IE+ NKVH F+A D  HP+S EIY  L +I   L  E GYV QT+ VLH+
Sbjct: 853 GLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHN 912

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
             E++K   L  HSE+LA+A+G+++T  G S++I KNLRVC DCH   KLISKF  R+++
Sbjct: 913 AKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELV 972

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           MRD NRFHHF  G CSCGD W
Sbjct: 973 MRDANRFHHFKGGVCSCGDVW 993



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 163/332 (49%), Gaps = 35/332 (10%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +++  Y K  ++  AR LFD M EK DVV WN MI  Y+ +G + EAL LF  M    +
Sbjct: 255 NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL 314

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T VA L AC     ++ G +IH+ +  S +  +NV V  ALI MY++ G + +A 
Sbjct: 315 APNTYTFVAALQACEDSSFIKQGMFIHATVLKS-SYYINVFVANALIAMYARFGKMGEAA 373

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F  ++D D + WNSM+ G+  +G   +ALQ ++EM     KP  +  I +++A A +G
Sbjct: 374 NIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 433

Query: 224 LVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLL------------- 255
               G +                 N++ D YA    +++  C+ + +             
Sbjct: 434 NTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 493

Query: 256 --SRAGQVEEAYKLVMDMKIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
             ++ G    A +L  ++++E    D ++  ++L AC     I+  ++I  Y+I + L++
Sbjct: 494 GHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSD 553

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                 + ++Y   GN D  AR+  L++ K V
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDV 585



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 14/289 (4%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-----RSLVSLTTMLTCYAKQGEV 57
           +FSLD+     +S+++L      +   +++ A M        S+   T ++  Y K G +
Sbjct: 110 QFSLDE---AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCL 166

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A  LFD M  K +  WN MI  Y  +G    +L L+R M    +  +  T   +L AC
Sbjct: 167 VDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 226

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVV 176
           G +     G  +H        + + V V  +++ MY+KC  L  AR +FDR+ +K DVV 
Sbjct: 227 GLLKDRRCGAEVHGLAIKEGYVSI-VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 285

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT-M 235
           WNSMI  Y+ +G   +AL+LF EM +  L P+  TF+  L AC  +  + +G     T +
Sbjct: 286 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 345

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           K  Y I   V +   ++ + +R G++ EA  +  +M  + D++ W ++L
Sbjct: 346 KSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNMD-DWDTISWNSML 391



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 152/288 (52%), Gaps = 10/288 (3%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLF 64
           DL    S++   AR G+ L+  ++ A   +  L S      +++  YAK   +     +F
Sbjct: 418 DLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIF 477

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D M +KDVV W  +I G+AQ+G  + AL LFR +  E ++ + +   ++L AC  +  + 
Sbjct: 478 DKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLIS 537

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           S + IHSYI   R    ++ +   ++++Y +CG++  A  +F+ +  KDVV W SMI  Y
Sbjct: 538 SVKEIHSYI--IRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY 595

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEP 243
             +G   +AL+LF+ M    ++P  I+ + +LSA A    + +G+     + +  + +E 
Sbjct: 596 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 655

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +     +V++ +R G +E++ + V +     D VLW +++ A  +HG
Sbjct: 656 SLA--STLVDMYARCGTLEKS-RNVFNFIRNKDLVLWTSMINAYGMHG 700



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 163/332 (49%), Gaps = 40/332 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  YA+ G++  A  +F +M++ D + WN M+ G+ Q+GL +EAL  +  M     +
Sbjct: 357 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 416

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ V  +++++A  + G   +G  IH+Y   +  +  ++QVG +L++MY+K  S+K    
Sbjct: 417 PDLVAVISIIAASARSGNTLNGMQIHAYAMKN-GLDSDLQVGNSLVDMYAKFCSMKYMDC 475

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI---GLLSACA- 220
           +FD++ DKDVV W ++I G+A +G    AL+LF E   ++L+  D+  +    +L AC+ 
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFRE---VQLEGIDLDVMMISSILLACSG 532

Query: 221 ----------HAGLVNEGRR---FFNTMKDEYA--------------IEPK-VEHYGCMV 252
                     H+ ++ +G       N + D Y               IE K V  +  M+
Sbjct: 533 LKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMI 592

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           +     G   EA +L   MK   +EPDS+   ++L A      +  G++I  +LI +   
Sbjct: 593 SCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFV 652

Query: 310 NSGTYV-LLSNIYAAIGNWDGVARVRTLMKEK 340
             G+    L ++YA  G  +    V   ++ K
Sbjct: 653 LEGSLASTLVDMYARCGTLEKSRNVFNFIRNK 684



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 63/305 (20%)

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTA----VAVLSACGQIGALESGRWIHSYIENSRNI 139
           + G  NEA      + A +  P++ +      +VL  CG   AL  G+ +H+++  S  +
Sbjct: 88  KRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
             +V + T L+ MY KCG L DA  +FD +  K +  WN+MI  Y  +G    +L+L+ E
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 200 MCRIRLKPSD-ITFIGLLSACA-----------HAGLVNEG------------------- 228
           M R+   P D  TF  +L AC            H   + EG                   
Sbjct: 207 M-RVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN 265

Query: 229 -----RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
                R+ F+ M +    +  V  +  M++  S  GQ  EA +L  +M+   + P++  +
Sbjct: 266 DLNGARQLFDRMPE----KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTF 321

Query: 281 GTLLGACRLHGNIALGEKI------AEYLISQNLANS--------GTYVLLSNIYAAIGN 326
              L AC     I  G  I      + Y I+  +AN+        G     +NI+  + +
Sbjct: 322 VAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 381

Query: 327 WDGVA 331
           WD ++
Sbjct: 382 WDTIS 386


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/489 (42%), Positives = 307/489 (62%), Gaps = 11/489 (2%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L   + V  +++++Y + G V    ++F  M +R++VS +T+L    K   V   R
Sbjct: 149 VKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGR 208

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQI 120
           V+FD+M E++ V W +MI GY  +G + E  +L   M L  ++  N VT  ++LSAC Q 
Sbjct: 209 VVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQS 268

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G +  GRW+H Y       ++++ VGTAL++MY+KCG +  A  VF  +  ++VV WN+M
Sbjct: 269 GDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAM 328

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + G AMHG GK  L +F +M     KP D+TF+ +LSAC+H+GLV++G  +F +++ EY 
Sbjct: 329 LGGLAMHGRGKFVLDIFPKMIE-EAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYG 387

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
             PK+EHY CMV++L RAG +EEA  L+  M + P+ V+ G+LLG+C  HG + LGE+I 
Sbjct: 388 TTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERIL 447

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + LI  +  N+  +VLLSN+Y   G  D    +R ++K KG++K PG SSI +   +H+F
Sbjct: 448 QELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQF 507

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT--QIVLHDIGE-------KQKQNSLEV 411
            AGD  HP +KEIY  L  +   L+  GYVP T  Q+     G        ++K+ +L +
Sbjct: 508 SAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFL 567

Query: 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVN 471
           HSEKLAV FG IST+PG  + I KNLR+C DCH+  K++SK   R+I++RDRNRFH F +
Sbjct: 568 HSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKH 627

Query: 472 GTCSCGDYW 480
           G+CSC DYW
Sbjct: 628 GSCSCSDYW 636



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 165/386 (42%), Gaps = 46/386 (11%)

Query: 1   TVKFSLDKDLYVS-TSLVDLYARGGDVLSAEKLFATMPQRSLVS-------LTTMLTCYA 52
           T+ F+  + L     SL+   AR   + + +KL A +    L S       L  +   YA
Sbjct: 5   TINFTTLQSLPARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYA 64

Query: 53  KQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGL-ANEALVLFRRMLAEKVEPNEVT 109
             G  ++AR LF  +    KDV  W  ++    QHG   +E    F+ M  E V  ++V 
Sbjct: 65  SCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVA 124

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
            ++V   C ++  L  GR     +     + + V+V  A++NMY KCG +++ R VF  +
Sbjct: 125 MISVFVLCTRVEDLGMGRQAQGCLVK-MGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEM 183

Query: 170 NDKDVVVWNS-------------------------------MIVGYAMHGFGKDALQLFN 198
           N+++VV W++                               MI GY  +GF ++   L +
Sbjct: 184 NERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLD 243

Query: 199 EMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
           EM  R RL  + +T   +LSACA +G V  GR            E  +     +V++ ++
Sbjct: 244 EMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAK 303

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317
            G ++ A+K V     + + V W  +LG   +HG       I   +I +   +  T++ +
Sbjct: 304 CGPIDMAFK-VFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDDLTFMAV 362

Query: 318 SNIYAAIGNWD-GVARVRTLMKEKGV 342
            +  +  G  D G    R+L  E G 
Sbjct: 363 LSACSHSGLVDQGYHYFRSLESEYGT 388


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 286/440 (65%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +  ++L+ YAK G +  A  LFD+M  KD V ++ ++ GY Q+G A EA ++F++M A
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 434

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP+  T V+++ AC  + AL+ GR  H  +   R +     +  ALI+MY+KCG + 
Sbjct: 435 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKCGRID 493

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R VF+ +  +D+V WN+MI GY +HG GK+A  LF EM  +   P  +TFI LLSAC+
Sbjct: 494 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F+ M+  Y + P++EHY CMV+LLSR G ++EAY+ +  M +  D  +W
Sbjct: 554 HSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 613

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGACR++ NI LG+K++  +       +G +VLLSNIY+A G +D  A VR + K +
Sbjct: 614 VALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQ 673

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCS IE++  +H F+ GD  HP+S EIY  L+ I   +K  GY P T  VL D+
Sbjct: 674 GFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 733

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLA+A+G++S     +I + KNLRVC DCH V K IS    R I++
Sbjct: 734 EEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIV 793

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF NG CSCGD+W
Sbjct: 794 RDANRFHHFKNGQCSCGDFW 813



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 174/393 (44%), Gaps = 97/393 (24%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  DL+VST+L+D+Y +   +  A  +FATMP                            
Sbjct: 156 LQADLFVSTALLDMYVKCACLPDAAHIFATMP---------------------------- 187

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEAL--VLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
               +D+V WN M+ GYA HG+ + A+  +L  +M   ++ PN  T VA+L    Q GAL
Sbjct: 188 ---ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGAL 244

Query: 124 ESGRWIHSY-----IENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
             G  +H+Y     + ++RN K      V +GTAL++MY+KCGSL  AR VFD +  ++ 
Sbjct: 245 AQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 304

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFI------------------ 213
           V W+++I G+ +      A  LF  M       L P+ I                     
Sbjct: 305 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHA 364

Query: 214 ---------------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
                           LLS  A AGL+++    F    DE A++  V  Y  +V+   + 
Sbjct: 365 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF----DEMAVKDTVS-YSALVSGYVQN 419

Query: 259 GQVEEAYKLVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYLISQ-NLA 309
           G+ EEA+ +   M+   +EPD+    +L+ AC       HG  + G  I   L S+ ++ 
Sbjct: 420 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSIC 479

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           N+     L ++YA  G  D   +V  +M  + +
Sbjct: 480 NA-----LIDMYAKCGRIDLSRQVFNMMPSRDI 507



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 135/264 (51%), Gaps = 7/264 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  AR +FD M  ++ V W+ +I G+       +A +LF+ MLA+ + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 105 PNEVTAVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
               T++A  L AC  +  L  G  +H+ +  S  +  ++  G +L++MY+K G +  A 
Sbjct: 337 FLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD +  KD V +++++ GY  +G  ++A  +F +M    ++P   T + L+ AC+H  
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  GR    ++     +  +      ++++ ++ G+++ + + V +M    D V W T+
Sbjct: 456 ALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLS-RQVFNMMPSRDIVSWNTM 513

Query: 284 LGACRLHGNIALGEKIAEYLISQN 307
           +    +HG   LG++     +  N
Sbjct: 514 IAGYGIHG---LGKEATALFLEMN 534



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG--LANEALVLFRRMLAEKVEPNEVTAVA 112
           G ++ A  LFD +   DV  +N +I  Y+      A + L L+RRML  +V PN  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
            L AC  +     GR IH +  ++  ++ ++ V TAL++MY KC  L DA  +F  +  +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHA-GLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 173 DVVVWNSMIVGYAMHGFGKDALQ--LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           D+V WN+M+ GYA HG    A+   L  +M   RL+P+  T + LL   A  G + +G
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 34/178 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  +  +  +L+D+YA+ G +  + ++F  MP R +VS  TM                  
Sbjct: 472 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM------------------ 513

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG-ALE 124
                        I GY  HGL  EA  LF  M      P+ VT + +LSAC   G  +E
Sbjct: 514 -------------IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
              W H  + +   +   ++    ++++ S+ G L +A      +  + DV VW +++
Sbjct: 561 GKHWFH-VMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/486 (42%), Positives = 309/486 (63%), Gaps = 21/486 (4%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            VK    KD YV  +L+D+Y+R G V  ++ +F  M +R +VS  TM+T     G    A 
Sbjct: 664  VKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDAL 723

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             L  +M+ +             Q    ++  V +        +PN VT + VL  C  + 
Sbjct: 724  NLLHEMQRR-------------QGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALA 770

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            AL  G+ IH+Y    + + ++V VG+AL++MY+KCG L  A  VFD++  ++V+ WN +I
Sbjct: 771  ALGKGKEIHAYAVKQK-LAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLI 829

Query: 182  VGYAMHGFGKDALQLFNEMC------RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            + Y MHG G++AL+LF  M       R  ++P+++T+I + +AC+H+G+V+EG   F+TM
Sbjct: 830  MAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTM 889

Query: 236  KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHGNIA 294
            K  + +EP+ +HY C+V+LL R+G+V+EAY+L+  M    + V  W +LLGACR+H ++ 
Sbjct: 890  KASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVE 949

Query: 295  LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
             GE  A++L       +  YVL+SNIY++ G WD    VR  MKE GV+KEPGCS IE  
Sbjct: 950  FGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHG 1009

Query: 355  NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSE 414
            ++VH+FL+GD  HP+SKE++  LE ++  ++ EGYVP    VLH++ +++K+  L  HSE
Sbjct: 1010 DEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSE 1069

Query: 415  KLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTC 474
            +LA+AFGL++T PGT+I++ KNLRVC DCH   K+ISK   R+I++RD  RFHHF NGTC
Sbjct: 1070 RLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTC 1129

Query: 475  SCGDYW 480
            SCGDYW
Sbjct: 1130 SCGDYW 1135



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 21/287 (7%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT--TMLTCYAKQGEVAAARVLFDDMEE 69
           VS +    + RGG  L  +    T+    L + T   ++T YA+ G V  A+ LF   + 
Sbjct: 437 VSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDG 496

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           KD+V WN +I   +Q+    EAL+    M+ + V P+ VT  +VL AC Q+  L  GR I
Sbjct: 497 KDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H Y   + ++  N  VGTAL++MY  C   K  RLVFD V  + V VWN+++ GYA + F
Sbjct: 557 HCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEF 616

Query: 190 GKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEG--------RRFFNTMKDEYA 240
              AL+LF EM       P+  TF  +L AC    + ++         +R F   KD+Y 
Sbjct: 617 DDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFG--KDKYV 674

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
                     ++++ SR G+VE +  +   M  + D V W T++  C
Sbjct: 675 -------QNALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGC 713



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 131/267 (49%), Gaps = 24/267 (8%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
           T ++  Y    +    R++FD +  + V  WN ++ GYA++   ++AL LF  M++E + 
Sbjct: 574 TALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEF 633

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T  +VL AC +         IH YI   R    +  V  AL++MYS+ G ++ ++
Sbjct: 634 CPNATTFASVLPACVRCKVFSDKEGIHGYIVK-RGFGKDKYVQNALMDMYSRMGRVEISK 692

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR------------------IRL 205
            +F R+N +D+V WN+MI G  + G   DAL L +EM R                  +  
Sbjct: 693 TIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPF 752

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           KP+ +T + +L  CA    + +G+      +K + A++  V     +V++ ++ G +  A
Sbjct: 753 KPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVG--SALVDMYAKCGCLNLA 810

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHG 291
            ++   M I  + + W  L+ A  +HG
Sbjct: 811 SRVFDQMPIR-NVITWNVLIMAYGMHG 836



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 103/198 (52%), Gaps = 3/198 (1%)

Query: 33  FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
           F   P  S+    +++  Y K G++ AAR +FDD+ ++D V WN MI    +      +L
Sbjct: 359 FGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSL 418

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQI-GALESGRWIHSYIENSRNIKVNVQVGTALIN 151
            LFR ML+E V+P   T V+V  AC  + G +  G+ +H+Y    RN  +      AL+ 
Sbjct: 419 HLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAY--TLRNGDLRTYTNNALVT 476

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY++ G + DA+ +F   + KD+V WN++I   + +   ++AL     M    ++P  +T
Sbjct: 477 MYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVT 536

Query: 212 FIGLLSACAHAGLVNEGR 229
              +L AC+    +  GR
Sbjct: 537 LASVLPACSQLERLRIGR 554



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 48/252 (19%)

Query: 112 AVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           AVL A   +  L  G+ IH+++ +       +V V  +L+NMY KCG L  AR VFD + 
Sbjct: 335 AVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIP 394

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-------- 222
           D+D V WNSMI         + +L LF  M    + P+  T + +  AC+H         
Sbjct: 395 DRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGK 454

Query: 223 ---------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
                                      G VN+ +  F     +  +      +  +++ L
Sbjct: 455 QVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVS-----WNTVISSL 509

Query: 256 SRAGQVEEA----YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN--LA 309
           S+  + EEA    Y +++D  + PD V   ++L AC     + +G +I  Y +     + 
Sbjct: 510 SQNDRFEEALMYVYLMIVD-GVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIE 568

Query: 310 NSGTYVLLSNIY 321
           NS     L ++Y
Sbjct: 569 NSFVGTALVDMY 580


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/436 (43%), Positives = 288/436 (66%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  Y + G +  A+++FD +E ++ V WN +I G+A+     +AL LF+ ML +   
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 259

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  +  ++  AC   G LE G+W+H+Y+  S   K+    G  L++MY+K GS+ DAR 
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE-KLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FDR+  +DVV WNS++  YA HGFGK+A+  F EM R+ ++P++I+F+ +L+AC+H+GL
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG  ++  MK +  I P+  HY  +V+LL RAG +  A + + +M IEP + +W  LL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H N  LG   AE++   +  + G +V+L NIYA+ G W+  ARVR  MKE GV+K
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N +H F+A D RHP+ +EI    EE+   +K  GYVP T  V+  + +++
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L+ HSEK+A+AF L++T PG++I I KN+RVC DCH   KL SK  GR+I++RD N
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSC DYW
Sbjct: 618 RFHHFKDGNCSCKDYW 633



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 137/261 (52%), Gaps = 5/261 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +  ++ +  +V   T+L  YAK G +  AR +F+ M ++D V W  +I GY+QH    +A
Sbjct: 86  ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           L+ F +ML     PNE T  +V+ A         G  +H +         NV VG+AL++
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLD 204

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           +Y++ G + DA+LVFD +  ++ V WN++I G+A     + AL+LF  M R   +PS  +
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMD 270
           +  L  AC+  G + +G+     M    + E  V   G  ++++ +++G + +A K + D
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIK--SGEKLVAFAGNTLLDMYAKSGSIHDARK-IFD 321

Query: 271 MKIEPDSVLWGTLLGACRLHG 291
              + D V W +LL A   HG
Sbjct: 322 RLAKRDVVSWNSLLTAYAQHG 342



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 49/255 (19%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C     L  GR +H++I  S   + ++ +G  L+NMY+KCGSL++AR VF+++  +
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA--------CAHA-- 222
           D V W ++I GY+ H    DAL  FN+M R    P++ T   ++ A        C H   
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 223 -------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
                                    GL+++ +  F+ ++    +      +  ++   +R
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHAR 239

Query: 258 AGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANS 311
               E+A +L   M      P    + +L GAC   G +  G+ +  Y+I      +A +
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 312 GTYVLLSNIYAAIGN 326
           G  +L  ++YA  G+
Sbjct: 300 GNTLL--DMYAKSGS 312



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 36/229 (15%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +   +L+D+YA+ G +  A K+F  + +R +VS  ++LT Y                   
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY------------------- 338

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                       AQHG   EA+  F  M    + PNE++ ++VL+AC   G L+ G W +
Sbjct: 339 ------------AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHY 385

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     I         ++++  + G L  A R + +   +    +W +++    MH  
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH-- 443

Query: 190 GKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKD 237
               L  +       L P D    + L +  A  G  N+  R    MK+
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKE 492


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 284/437 (64%), Gaps = 2/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++T Y K      A  +FD++  K  V WN MI G  Q+G + +A+ LF RM  E V
Sbjct: 466 MNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENV 525

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T V+++ A   I      RWIH Y     ++  +V V TALI+MY+KCG +  AR
Sbjct: 526 KPDSFTLVSIIPALADISDPLQARWIHGY-SIRLHLDQDVYVLTALIDMYAKCGRVSIAR 584

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+   D+ V+ WN+MI GY  HG GK A++LF EM      P++ TF+ +LSAC+HAG
Sbjct: 585 SLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAG 644

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EG+ +F++MK++Y +EP +EHYG MV+LL RAG++ EA+  +  M +EP   ++G +
Sbjct: 645 LVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAM 704

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC+LH N+ L E+ A+ +          +VLL+NIYA    W  VARVRT M++KG+Q
Sbjct: 705 LGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQ 764

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S ++L N++H F +G   H ++K+IY  L ++   +KA GYVP T  + HD+ + 
Sbjct: 765 KTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDD 823

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K   L  HSEKLA+A+GLI T PGT+I+I KNLRVC DCH   KLIS  TGR+I+MRD 
Sbjct: 824 VKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDI 883

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGDYW
Sbjct: 884 QRFHHFKDGKCSCGDYW 900



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFD 65
           L   TSL+ L A   D+ +   + A +  R L    ++ T +   YAK      AR +FD
Sbjct: 225 LRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFD 284

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALE 124
            M  +D V WN ++ GYA++GLA  A+ +  RM  E  E P+ VT V+VL AC    AL 
Sbjct: 285 RMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALG 344

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           + R +H++          V V TA++++Y KCG++  AR VFD + D++ V WN+MI GY
Sbjct: 345 ACREVHAFAVRG-GFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGY 403

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A +G   +AL LF  M    +  +D++ +  L AC   G ++EGRR    +     +E  
Sbjct: 404 AENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLV-RIGLESN 462

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           V     ++ +  +  + + A ++  ++  +   V W  ++  C  +G+
Sbjct: 463 VNVMNALITMYCKCKRTDLAAQVFDELGYK-TRVSWNAMILGCTQNGS 509



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD+D+YV T+L+D+YA+ G V  A  LF +   R +++   M+            
Sbjct: 555 SIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMI------------ 602

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GY  HG    A+ LF  M +    PNE T ++VLSAC   
Sbjct: 603 -------------------HGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHA 643

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           G ++ G+   S ++    ++  ++    ++++  + G L +A     ++  +  + V+ +
Sbjct: 644 GLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGA 703

Query: 180 MIVGYAMH 187
           M+    +H
Sbjct: 704 MLGACKLH 711


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/435 (44%), Positives = 288/435 (66%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++++ Y +   +   +++FD ME K +VCWNVMI G++Q+ L  EAL  FR+ML+  ++P
Sbjct: 542 SLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKP 601

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            E+    VL AC Q+ AL  G+ +HS+   + ++  +  V  ALI+MY+KCG ++ ++ +
Sbjct: 602 QEIAVTGVLGACSQVSALRLGKEVHSFALKA-HLSEDAFVTCALIDMYAKCGCMEQSQNI 660

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDRVN+KD  VWN +I GY +HG G  A++LF  M     +P   TF+G+L AC HAGLV
Sbjct: 661 FDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLV 720

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG ++   M++ Y ++PK+EHY C+V++L RAGQ+ EA KLV +M  EPDS +W +LL 
Sbjct: 721 TEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLS 780

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           +CR +G++ +GE++++ L+      +  YVLLSN+YA +G WD V +VR  MKE G+ K+
Sbjct: 781 SCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKD 840

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
            GCS IE+   V+ FL  D    +SK+I     ++   +   GY P T  VLH++ E+ K
Sbjct: 841 AGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGK 900

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
              L+ HSEKLA++FGL++T  GT++++ KNLR+C DCH   KL+SK   R I++RD  R
Sbjct: 901 IKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKR 960

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF NG C+CGD+W
Sbjct: 961 FHHFKNGLCTCGDFW 975



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
              +  YAK   +  A  +F  ME K V  WN +I  +AQ+G   ++L LF  M+   ++
Sbjct: 440 NAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMD 499

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T  ++L AC ++  L  G+ IH ++  +  ++++  +G +L+++Y +C S+   +L
Sbjct: 500 PDRFTIGSLLLACARLKFLRCGKEIHGFMLRN-GLELDEFIGISLMSLYIQCSSMLLGKL 558

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD++ +K +V WN MI G++ +    +AL  F +M    +KP +I   G+L AC+    
Sbjct: 559 IFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSA 618

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G+   +     +  E        ++++ ++ G +E++   + D   E D  +W  ++
Sbjct: 619 LRLGKEVHSFALKAHLSEDAFVTCA-LIDMYAKCGCMEQSQN-IFDRVNEKDEAVWNVII 676

Query: 285 GACRLHGN 292
               +HG+
Sbjct: 677 AGYGIHGH 684



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 5/180 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y K G V +A  +F+ M  +++V WN ++   +++G   E   +F+R+L  + E
Sbjct: 234 NALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEE 293

Query: 105 ---PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              P+  T V V+ AC  +G +  G  +H  +     I   V V  +L++MYSKCG L +
Sbjct: 294 GLVPDVATMVTVIPACAAVGEVRMGMVVHG-LAFKLGITEEVTVNNSLVDMYSKCGYLGE 352

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACA 220
           AR +FD    K+VV WN++I GY+  G  +   +L  EM R  +++ +++T + +L AC+
Sbjct: 353 ARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 8/256 (3%)

Query: 34  ATMPQRSLVSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
           A+   R+ V L+T ++  Y+  G  + +R +FD  +EKD+  +N ++ GY+++ L  +A+
Sbjct: 120 ASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAI 179

Query: 93  VLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
            LF  +L A  + P+  T   V  AC  +  +E G  +H+    +     +  VG ALI 
Sbjct: 180 SLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFS-DAFVGNALIA 238

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPS 208
           MY KCG ++ A  VF+ + ++++V WNS++   + +G   +   +F  +       L P 
Sbjct: 239 MYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPD 298

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             T + ++ ACA  G V  G    + +  +  I  +V     +V++ S+ G + EA  L 
Sbjct: 299 VATMVTVIPACAAVGEVRMG-MVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARAL- 356

Query: 269 MDMKIEPDSVLWGTLL 284
            DM    + V W T++
Sbjct: 357 FDMNGGKNVVSWNTII 372



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 139/316 (43%), Gaps = 36/316 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKV 103
            +++  Y+K G +  AR LFD    K+VV WN +I GY++ G       L + M   EKV
Sbjct: 338 NSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKV 397

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             NEVT + VL AC     L S + IH Y      +K  + V  A +  Y+KC SL  A 
Sbjct: 398 RVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDEL-VANAFVAAYAKCSSLDCAE 456

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  +  K V  WN++I  +A +GF   +L LF  M    + P   T   LL ACA   
Sbjct: 457 RVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLK 516

Query: 224 LVNEGRRFFNTM------KDEYA-------------------IEPKVEHYG--CMVNLLS 256
            +  G+     M       DE+                    I  K+E+    C   +++
Sbjct: 517 FLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMIT 576

Query: 257 RAGQVE------EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA- 309
              Q E      + ++ ++   I+P  +    +LGAC     + LG+++  + +  +L+ 
Sbjct: 577 GFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSE 636

Query: 310 NSGTYVLLSNIYAAIG 325
           ++     L ++YA  G
Sbjct: 637 DAFVTCALIDMYAKCG 652



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 15/189 (7%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L ACG    +  GR +H+ +  S  ++ +V + T +I MYS CGS  D+R VFD   +K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           D+ ++N+++ GY+ +   +DA+ LF E+     L P + T   +  ACA    V  G   
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 232 F------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
                      D +     +  YG       + G VE A K+   M+   + V W +++ 
Sbjct: 218 HALALKAGGFSDAFVGNALIAMYG-------KCGFVESAVKVFETMR-NRNLVSWNSVMY 269

Query: 286 ACRLHGNIA 294
           AC  +G   
Sbjct: 270 ACSENGGFG 278


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/439 (44%), Positives = 279/439 (63%), Gaps = 1/439 (0%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +SL T+L+ +AK G +  A  +F   +   +  WN MI  Y QHG + +A+ LF  +LA 
Sbjct: 1   MSLVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLAR 60

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           ++EPN VT + VL AC  + AL  G+ +H+ I     +   V V TA+++MYSKCG L +
Sbjct: 61  RIEPNSVTLMEVLDACASLAALRDGKRVHA-IARDHGVDSEVAVATAIVDMYSKCGCLDE 119

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A   F R+   D V W +M+  +A HG    AL  F  M     KP+ +TF+ LLSAC+H
Sbjct: 120 AVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSH 179

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            GLV EGR++F+ M   Y I P  +HY CMV+LL RAG ++EA   +  M   P + +  
Sbjct: 180 KGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLK 239

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LL ACR + ++  GE+IA+ ++      S  YV+L++IY A G W+  AR+R+LM E+G
Sbjct: 240 SLLSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERG 299

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           V+K+PG S+IE+  +V EF+AGD+ H +   I   L+E++  +K  GYVP T +VLHD+ 
Sbjct: 300 VRKDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVA 359

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+  L  HSEKLAVAFGL++T  G+ I+++KNLRVC DCH   KLIS    R+I+ R
Sbjct: 360 EEEKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFR 419

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D +RFHHF NG CSCGDYW
Sbjct: 420 DLSRFHHFENGVCSCGDYW 438


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/507 (40%), Positives = 303/507 (59%), Gaps = 39/507 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG----- 55
           T +  LD +++V+ S + +YAR G    A ++F  M  R +VS   M++ +A  G     
Sbjct: 148 TARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRA 207

Query: 56  ---------------------------------EVAAARVLFDDMEEKDVVCWNVMIDGY 82
                                            ++A  + +FD+M  K ++ WN M+  Y
Sbjct: 208 MDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVY 267

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
             + +  EA+ LF RM  + +EP+ VT   VL +CG++ AL  G+ IH  I+  R +  +
Sbjct: 268 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKR-RRMCSS 326

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           + +  AL++MY+ CG LK+AR VFD +  +DVV W S+I  Y  HG G++A+ LF +MC 
Sbjct: 327 MLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCG 386

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             L+P  I F+ +L+AC+HAGL++ G+ +F +M  E+ I PK+EHY CMV+LL RAG + 
Sbjct: 387 QGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIR 446

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
           EAY  +M M I+P+  +WG LLGACR+H N+ +G   A+ L+      +G YVLLSNIYA
Sbjct: 447 EAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYA 506

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
             G W  V+ VR++M+ KG++K PG S+ EL ++VH F  GD  HP+SK IY  L E+  
Sbjct: 507 RAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLR 566

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPD 442
            ++  GY P+ +  LHD+ E+ K+  L VHSEKLA+AF LI+T PGT I+I  NLR C D
Sbjct: 567 RIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSD 626

Query: 443 CHAVFKLISKFTGRKIMMRDRNRFHHF 469
           CH   KLIS   GR+I+++D NR H+ 
Sbjct: 627 CHHAAKLISTIAGREIILKDVNRIHYM 653



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 17/273 (6%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQI 120
           + D   ++  V +NV++ G     L  +AL+LF  M  +     P+  T    L +C   
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             L  GR IHS       +  NV V  + I+MY++CG   DA  +F+ +  +DVV WN+M
Sbjct: 136 DGLVLGRQIHSSTAR-LGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAM 194

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I G+A  G    A+ +F E+  ++  KP   T   +L +   A +  E       + DE 
Sbjct: 195 ISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARV--EDIALLKGVFDEM 252

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG 296
             +  +  +  M+ + +      EA +L M M+   IEPD+V   T+L +C     ++LG
Sbjct: 253 RFKGLIS-WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG 311

Query: 297 EKIAEYLISQNLANSGTYVLLSN----IYAAIG 325
           ++I E +  + + +S   +LL N    +YA  G
Sbjct: 312 KRIHEVIKRRRMCSS---MLLENALMDMYANCG 341


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 307/474 (64%), Gaps = 3/474 (0%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +YV  +++D+Y +   +  A K+F  MP+R ++S T ++  YA+ G +  A  LF+ +  
Sbjct: 184 VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPT 243

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE-SGRW 128
           KD+V W  M+ G+AQ+    EAL  F RM    +  +EVT    +SAC Q+GA + + R 
Sbjct: 244 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 303

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +    ++  +   +V +G+ALI+MYSKCG++++A  VF  +N+K+V  ++SMI+G A HG
Sbjct: 304 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHG 363

Query: 189 FGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
             ++AL LF+ M  +  +KP+ +TF+G L AC+H+GLV++GR+ F++M   + ++P  +H
Sbjct: 364 RAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH 423

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL R G+++EA +L+  M +EP   +WG LLGACR+H N  + E  AE+L    
Sbjct: 424 YTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELE 483

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS-SIELSNKVHEFLAGDLR 366
               G Y+LLSN+YA+ G+W GV RVR L+KEKG++K P  S  ++ + ++H+F  G+L 
Sbjct: 484 PDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLN 543

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP S +I   LEE+   L   GY P    V +D+ +  K+  L  H+EKLA+AF L++T 
Sbjct: 544 HPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTN 603

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             ++I I+KNLR+C DCH   +L S+ TG+ I+MRD  RFHHF +G CSCGD+W
Sbjct: 604 RDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 34/295 (11%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR + + ++ ++   W  +I GYA  G  +EA+ ++  M  E++ P   T  A+L ACG 
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV----- 174
           +  L  GR  H+     R     V VG  +I+MY KC S+  AR VFD + ++DV     
Sbjct: 162 MKDLNLGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTE 220

Query: 175 --------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
                                     V W +M+ G+A +   ++AL+ F+ M +  ++  
Sbjct: 221 LIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRAD 280

Query: 209 DITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           ++T  G +SACA  G      R      K  Y+    V     ++++ S+ G VEEA  +
Sbjct: 281 EVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 340

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
            M M    +   + +++     HG       +  Y+++Q      T   +  + A
Sbjct: 341 FMSMN-NKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMA 394


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 283/437 (64%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y+K G    A  +F  +E+KDVV W+ M+  +AQ G    A  LF +M  + ++
Sbjct: 439 TALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK 498

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  +V+ AC    A ++ GR  H+ I         + V +AL++MYS+ G++  A+
Sbjct: 499 PNEFTISSVIDACACPSAGVDQGRQFHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQ 557

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +VF+R  D+D+V WNSMI GYA HG+   A++ F +M    ++   +TF+ ++  C H G
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNG 617

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F++M  ++ I P +EHY CMV+L SRAG+++E   L+ DM     +++W TL
Sbjct: 618 LVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTL 677

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LG+  A+ L+S    +S TYVLLSNIYAA G W     VR LM  + V+
Sbjct: 678 LGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVK 737

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS I++ NKVH F+A D  HP S +IY  L+ I   LK +GY P T  VLHDI E 
Sbjct: 738 KEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAED 797

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L  HSE+LA+AFGLI+T PGT ++IVKNLRVC DCH V K++S    R+I+MRD 
Sbjct: 798 QKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDC 857

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFHHF  G CSCGD+W
Sbjct: 858 SRFHHFNGGACSCGDFW 874



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 19/255 (7%)

Query: 44  LTTMLTCYAKQGEVAAARVLFD-DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +T +   Y+K GE+A A  +F      ++VV W  +I G  Q+G    A+VLF RM  ++
Sbjct: 340 MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDR 399

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGS 158
           V PNE T  A+L A   I   +    IH+ +     IK N Q    VGTAL+  YSK GS
Sbjct: 400 VMPNEFTYSAMLKASLSILPPQ----IHAQV-----IKTNYQHIPFVGTALLASYSKFGS 450

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
            +DA  +F  +  KDVV W++M+  +A  G  + A  LFN+M    +KP++ T   ++ A
Sbjct: 451 TEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 219 CA--HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA   AG V++GR+ F+ +  +Y     +     +V++ SR G ++ A ++V + + + D
Sbjct: 511 CACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSA-QIVFERQTDRD 567

Query: 277 SVLWGTLLGACRLHG 291
            V W +++     HG
Sbjct: 568 LVSWNSMISGYAQHG 582



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 132/253 (52%), Gaps = 4/253 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K G V     +F+ M +K+VV W  ++ G A   + +E + LF RM AE + 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  +VLSA    GAL+ G+ +H+        + +V V  +L+NMY+KCG ++DA+ 
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQ-SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ +  +D+V WN+++ G  ++    +ALQLF+E      K +  T+  ++  CA+   
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +   R+  +  +K  + +   V     + +  S+ G++ +A  +        + V W  +
Sbjct: 318 LALARQLHSCVLKHGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAI 375

Query: 284 LGACRLHGNIALG 296
           +  C  +G+I L 
Sbjct: 376 ISGCIQNGDIPLA 388



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 31/280 (11%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + S+    +++  YAK G V  A+ +F+ ME +D+V WN ++ G   +    EAL LF  
Sbjct: 233 RSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHE 292

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
             A   +  + T   V+  C  +  L   R +HS +       +   V TAL + YSKCG
Sbjct: 293 SRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCG 351

Query: 158 SLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            L DA  +F      ++VV W ++I G   +G    A+ LF+ M   R+ P++ T+  +L
Sbjct: 352 ELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411

Query: 217 SAC-------AHAGLVNEGRRF--------------FNTMKDEYAIEPKVEH-----YGC 250
            A         HA ++    +               F + +D  +I   +E      +  
Sbjct: 412 KASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSA 471

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGAC 287
           M++  ++AG  E A  L   M I+   P+     +++ AC
Sbjct: 472 MLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 60  ARVLFDDMEEKDV-VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           AR   D++  +D  V  N ++  YA+ G+  E L  F       V  +  T   VL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +     G  +H       + +  V  GT+L++MY KCGS+ +   VF+ +  K+VV W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           S++ G A      + + LF  M    + P+  TF  +LSA A  G ++ G+R  +    +
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR-VHAQSVK 229

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
           +     V     ++N+ ++ G VE+A K V +     D V W TL+   +L+
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDA-KSVFNWMETRDMVSWNTLMAGLQLN 280



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 46/224 (20%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K+     + VS++LV +Y+R G++ SA+ +F     R LVS  +M++           
Sbjct: 528 SIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMIS----------- 576

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GYAQHG + +A+  FR+M A  ++ + VT +AV+  C   
Sbjct: 577 --------------------GYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHN 616

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G +  G+     +     I   ++    ++++YS+ G L +   L+ D       +VW +
Sbjct: 617 GLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676

Query: 180 MIVGYAMH------GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +H       F  D L        + L+P D +   LLS
Sbjct: 677 LLGACRVHKNVELGKFSADKL--------LSLEPHDSSTYVLLS 712


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/444 (45%), Positives = 282/444 (63%), Gaps = 4/444 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRM 98
           L+ L  ++  YAK      AR +FD +E KD  VV W VMI GYAQHG AN+AL LF ++
Sbjct: 412 LLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQI 471

Query: 99  LAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
             +K  ++PN  T    L AC ++G L  GR +H+Y   + N    + VG  LI+MYSK 
Sbjct: 472 FKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKS 531

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G +  AR VFD +  ++VV W S++ GY MHG G++AL LF++M ++      ITF+ +L
Sbjct: 532 GDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVL 591

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            AC+H+G+V++G  +F+ M   + I P  EHY CMV+LL RAG++ EA +L+ +M +EP 
Sbjct: 592 YACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPT 651

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           +V+W  LL A R+H NI LGE  A  L      N G+Y LLSN+YA    W  VAR+R+L
Sbjct: 652 AVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSL 711

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           MK  G++K PGCS I+       F  GD  HP+S++IY +L ++   +K  GYVPQT   
Sbjct: 712 MKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFA 771

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           LHD+ +++K + L  HSEKLAVA+G+++T PG  I+I KNLR+C DCH+    IS     
Sbjct: 772 LHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDH 831

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++RD +RFHHF  G+CSC  YW
Sbjct: 832 EIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 177/307 (57%), Gaps = 19/307 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +V+  L  D++V  +LV +YA+   +  A K+F  + ++ +VS   M+T Y++ G   +A
Sbjct: 260 SVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSA 319

Query: 61  RVLFDDMEEKD----VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
             LF  M+E+D    V+ W+ +I GYAQ G   EAL +FR+M    +EPN VT  ++LS 
Sbjct: 320 LSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSG 379

Query: 117 CGQIGALESGRWIHSY-IENSRNIKVN-----VQVGTALINMYSKCGSLKDARLVFDRV- 169
           C  +GAL  G+  H+Y I+N  N+  N     + V   LI+MY+KC S + AR +FD + 
Sbjct: 380 CASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIE 439

Query: 170 -NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSACAHAGLVN 226
             DK+VV W  MI GYA HG   DAL+LF ++ + +  LKP+  T    L ACA  G + 
Sbjct: 440 GKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELR 499

Query: 227 EGRRFFN-TMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            GR+     +++E   E +V + G C++++ S++G ++ A  +  +MK+  + V W +L+
Sbjct: 500 LGRQLHAYALRNEN--ESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLM 556

Query: 285 GACRLHG 291
               +HG
Sbjct: 557 TGYGMHG 563



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 166/385 (43%), Gaps = 90/385 (23%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRM---L 99
           +++  Y + G +  A  +FD++ E+   D+V WN ++  Y Q G +  AL +  RM    
Sbjct: 167 SIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHY 226

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-VQVGTALINMYSKCGS 158
           + K+ P+ +T V +L AC  + AL+ G+ +H +  + RN  V+ V VG AL++MY+KC  
Sbjct: 227 SLKLRPDAITLVNILPACASVFALQHGKQVHGF--SVRNGLVDDVFVGNALVSMYAKCSK 284

Query: 159 LKDARLVFDRVNDKDVVVWNSM-----------------------------------IVG 183
           + +A  VF+ +  KDVV WN+M                                   I G
Sbjct: 285 MNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAG 344

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR------------- 230
           YA  G G +AL +F +M    L+P+ +T   LLS CA  G +  G++             
Sbjct: 345 YAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLN 404

Query: 231 ---------FFNTMKDEYA--------------IEPK---VEHYGCMVNLLSRAGQVEEA 264
                      N + D YA              IE K   V  +  M+   ++ G+  +A
Sbjct: 405 WNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDA 464

Query: 265 YKLVMDM-----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LL 317
            KL   +      ++P++      L AC   G + LG ++  Y +     +   YV   L
Sbjct: 465 LKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCL 524

Query: 318 SNIYAAIGNWDGVARVRTLMKEKGV 342
            ++Y+  G+ D    V   MK + V
Sbjct: 525 IDMYSKSGDIDAARAVFDNMKLRNV 549



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 119/247 (48%), Gaps = 21/247 (8%)

Query: 51  YAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV 108
           Y + G  A A  L   +      V  WN +I    + GL ++ L  + +M      P+  
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           T   VL ACG+I +L  G  +H+ I  +  +  NV +  +++ MY +CG+L DA  +FD 
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHA-IVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDE 187

Query: 169 VNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEM---CRIRLKPSDITFIGLLSACAHA 222
           V ++   D+V WNS++  Y   G  + AL++   M     ++L+P  IT + +L ACA  
Sbjct: 188 VLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASV 247

Query: 223 GLVNEGRRFF-----NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
             +  G++       N + D+  +         +V++ ++  ++ EA K+   +K + D 
Sbjct: 248 FALQHGKQVHGFSVRNGLVDDVFVG------NALVSMYAKCSKMNEANKVFEGIK-KKDV 300

Query: 278 VLWGTLL 284
           V W  ++
Sbjct: 301 VSWNAMV 307



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           LYV   L+D+Y++ GD+ +A  +F  M  R++VS T+++T Y   G    A  LFD M++
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577

Query: 70  ----KDVVCWNVMIDGYAQHGLANEALVLFRRML 99
                D + + V++   +  G+ ++ ++ F  M+
Sbjct: 578 LGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMV 611


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/441 (47%), Positives = 288/441 (65%), Gaps = 2/441 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV    ++  Y + G V  A  +F+ +E KDVV W  MI  Y  +GLANEAL LF  M  
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 577

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP+ ++ V++LSA   + AL+ G+ IH ++   +   +   + + L++MY++CG+L+
Sbjct: 578 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIR-KGFVLEGSLASTLVDMYARCGTLE 636

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R VF+ + +KD+V+W SMI  Y MHG G+ A+ LF  M    + P  I F+ +L AC+
Sbjct: 637 KSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACS 696

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GL+NEGRRF  +MK EY +EP  EHY C+V+LL RA  +EEAY+ V  M++EP + +W
Sbjct: 697 HSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVW 756

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGAC++H N  LGE  A+ L+  +  N G YVL+SN+Y+A   W  V  VR  MK  
Sbjct: 757 CALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKAS 816

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHD 399
           G++K PGCS IE+ NKVH F+A D  HP+S EIY  L +I   L  E GYV QT+ VLH+
Sbjct: 817 GLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHN 876

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
             E++K   L  HSE+LA+A+G+++T  G S++I KNLRVC DCH   KLISKF  R+++
Sbjct: 877 AKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELV 936

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           MRD NRFHHF  G CSCGD W
Sbjct: 937 MRDANRFHHFKGGVCSCGDVW 957



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 163/332 (49%), Gaps = 35/332 (10%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +++  Y K  ++  AR LFD M EK DVV WN MI  Y+ +G + EAL LF  M    +
Sbjct: 219 NSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASL 278

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T VA L AC     ++ G +IH+ +  S +  +NV V  ALI MY++ G + +A 
Sbjct: 279 APNTYTFVAALQACEDSSFIKQGMFIHATVLKS-SYYINVFVANALIAMYARFGKMGEAA 337

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F  ++D D + WNSM+ G+  +G   +ALQ ++EM     KP  +  I +++A A +G
Sbjct: 338 NIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSG 397

Query: 224 LVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLL------------- 255
               G +                 N++ D YA    +++  C+ + +             
Sbjct: 398 NTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 457

Query: 256 --SRAGQVEEAYKLVMDMKIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
             ++ G    A +L  ++++E    D ++  ++L AC     I+  ++I  Y+I + L++
Sbjct: 458 GHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSD 517

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                 + ++Y   GN D  AR+  L++ K V
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDV 549



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 14/289 (4%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-----RSLVSLTTMLTCYAKQGEV 57
           +FSLD+     +S+++L      +   +++ A M        S+   T ++  Y K G +
Sbjct: 74  QFSLDE---AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCL 130

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             A  LFD M  K +  WN MI  Y  +G    +L L+R M    +  +  T   +L AC
Sbjct: 131 VDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 190

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVV 176
           G +     G  +H        + + V V  +++ MY+KC  L  AR +FDR+ +K DVV 
Sbjct: 191 GLLKDRRYGAEVHGLAIKEGYVSI-VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 249

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT-M 235
           WNSMI  Y+ +G   +AL+LF EM +  L P+  TF+  L AC  +  + +G     T +
Sbjct: 250 WNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVL 309

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           K  Y I   V +   ++ + +R G++ EA  +  +M  + D++ W ++L
Sbjct: 310 KSSYYINVFVAN--ALIAMYARFGKMGEAANIFYNMD-DWDTISWNSML 355



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 151/288 (52%), Gaps = 10/288 (3%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLF 64
           DL    S++   AR G+ L   ++ A   +  L S      +++  YAK   +     +F
Sbjct: 382 DLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIF 441

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D M +KDVV W  +I G+AQ+G  + AL LFR +  E ++ + +   ++L AC  +  + 
Sbjct: 442 DKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLIS 501

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           S + IHSYI   R    ++ +   ++++Y +CG++  A  +F+ +  KDVV W SMI  Y
Sbjct: 502 SVKEIHSYI--IRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY 559

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEP 243
             +G   +AL+LF+ M    ++P  I+ + +LSA A    + +G+     + +  + +E 
Sbjct: 560 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 619

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +     +V++ +R G +E++ + V +     D VLW +++ A  +HG
Sbjct: 620 SLA--STLVDMYARCGTLEKS-RNVFNFIRNKDLVLWTSMINAYGMHG 664



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 162/332 (48%), Gaps = 40/332 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  YA+ G++  A  +F +M++ D + WN M+ G+ Q+GL +EAL  +  M     +
Sbjct: 321 NALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQK 380

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ V  +++++A  + G    G  IH+Y   +  +  ++QVG +L++MY+K  S+K    
Sbjct: 381 PDLVAVISIIAASARSGNTLHGMQIHAYAMKN-GLDSDLQVGNSLVDMYAKFCSMKYMDC 439

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI---GLLSACA- 220
           +FD++ DKDVV W ++I G+A +G    AL+LF E   ++L+  D+  +    +L AC+ 
Sbjct: 440 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFRE---VQLEGIDLDVMMISSILLACSG 496

Query: 221 ----------HAGLVNEGRR---FFNTMKDEYA--------------IEPK-VEHYGCMV 252
                     H+ ++ +G       N + D Y               IE K V  +  M+
Sbjct: 497 LKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMI 556

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           +     G   EA +L   MK   +EPDS+   ++L A      +  G++I  +LI +   
Sbjct: 557 SCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFV 616

Query: 310 NSGTYV-LLSNIYAAIGNWDGVARVRTLMKEK 340
             G+    L ++YA  G  +    V   ++ K
Sbjct: 617 LEGSLASTLVDMYARCGTLEKSRNVFNFIRNK 648



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 129/305 (42%), Gaps = 63/305 (20%)

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTA----VAVLSACGQIGALESGRWIHSYIENSRNI 139
           + G  NEA      + A +  P++ +      +VL  CG   AL  G+ +H+++  S  +
Sbjct: 52  KRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
             +V + T L+ MY KCG L DA  +FD +  K +  WN+MI  Y  +G    +L+L+ E
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 200 MCRIRLKPSD-ITFIGLLSACA-----------HAGLVNEG------------------- 228
           M R+   P D  TF  +L AC            H   + EG                   
Sbjct: 171 M-RVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN 229

Query: 229 -----RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
                R+ F+ M +    +  V  +  M++  S  GQ  EA +L  +M+   + P++  +
Sbjct: 230 DLNGARQLFDRMPE----KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTF 285

Query: 281 GTLLGACRLHGNIALGEKI------AEYLISQNLANS--------GTYVLLSNIYAAIGN 326
              L AC     I  G  I      + Y I+  +AN+        G     +NI+  + +
Sbjct: 286 VAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 345

Query: 327 WDGVA 331
           WD ++
Sbjct: 346 WDTIS 350


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 283/437 (64%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y+K G    A  +F  +E+KDVV W+ M+  +AQ G    A  LF +M  + ++
Sbjct: 439 TALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK 498

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  +V+ AC    A ++ GR  H+ I         + V +AL++MYS+ G++  A+
Sbjct: 499 PNEFTISSVIDACACPSAGVDQGRQFHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQ 557

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +VF+R  D+D+V WNSMI GYA HG+   A++ F +M    ++   +TF+ ++  C H G
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNG 617

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F++M  ++ I P +EHY CMV+L SRAG+++E   L+ DM     +++W TL
Sbjct: 618 LVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTL 677

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LG+  A+ L+S    +S TYVLLSNIYAA G W     VR LM  + V+
Sbjct: 678 LGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVK 737

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS I++ NKVH F+A D  HP S +IY  L+ I   LK +GY P T  VLHDI E 
Sbjct: 738 KEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAED 797

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L  HSE+LA+AFGLI+T PGT ++IVKNLRVC DCH V K++S    R+I+MRD 
Sbjct: 798 QKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDC 857

Query: 464 NRFHHFVNGTCSCGDYW 480
           +RFHHF  G CSCGD+W
Sbjct: 858 SRFHHFNGGACSCGDFW 874



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 137/255 (53%), Gaps = 19/255 (7%)

Query: 44  LTTMLTCYAKQGEVAAARVLFD-DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +T +   Y+K GE+A A  +F      ++VV W  +I G  Q+G    A+VLF RM  ++
Sbjct: 340 MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDR 399

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGS 158
           V PNE T  A+L A   I   +    IH+ +     IK N Q    VGTAL+  YSK GS
Sbjct: 400 VMPNEFTYSAMLKASLSILPPQ----IHAQV-----IKTNYQHIPSVGTALLASYSKFGS 450

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
            +DA  +F  +  KDVV W++M+  +A  G  + A  LFN+M    +KP++ T   ++ A
Sbjct: 451 TEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDA 510

Query: 219 CA--HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA   AG V++GR+ F+ +  +Y     +     +V++ SR G ++ A ++V + + + D
Sbjct: 511 CACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSA-QIVFERQTDRD 567

Query: 277 SVLWGTLLGACRLHG 291
            V W +++     HG
Sbjct: 568 LVSWNSMISGYAQHG 582



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 132/253 (52%), Gaps = 4/253 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K G V     +F+ M +K+VV W  ++ G A   + +E + LF RM AE + 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  +VLSA    GAL+ G+ +H+        + +V V  +L+NMY+KCG ++DA+ 
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQ-SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ +  +D+V WN+++ G  ++    +ALQLF+E      K +  T+  ++  CA+   
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +   R+  +  +K  + +   V     + +  S+ G++ +A  +        + V W  +
Sbjct: 318 LALARQLHSCVLKHGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTAI 375

Query: 284 LGACRLHGNIALG 296
           +  C  +G+I L 
Sbjct: 376 ISGCIQNGDIPLA 388



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 19/280 (6%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + S+    +++  YAK G V  A+ +F+ ME +D+V WN ++ G   +    EAL LF  
Sbjct: 233 RSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHE 292

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
             A   +  + T   V+  C  +  L   R +HS +       +   V TAL + YSKCG
Sbjct: 293 SRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCG 351

Query: 158 SLKDARLVFD-RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            L DA  +F      ++VV W ++I G   +G    A+ LF+ M   R+ P++ T+  +L
Sbjct: 352 ELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            A      +   +     +K  Y   P V     ++   S+ G  E+A   +  M  + D
Sbjct: 412 KASLS---ILPPQIHAQVIKTNYQHIPSVG--TALLASYSKFGSTEDALS-IFKMIEQKD 465

Query: 277 SVLWGTLL----------GACRLHGNIAL-GEKIAEYLIS 305
            V W  +L          GA  L   +A+ G K  E+ IS
Sbjct: 466 VVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTIS 505



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 60  ARVLFDDMEEKDV-VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           AR   D++  +D  V  N ++  YA+ G+  E L  F       V  +  T   VL AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +     G  +H       + +  V  GT+L++MY KCGS+ +   VF+ +  K+VV W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           S++ G A      + + LF  M    + P+  TF  +LSA A  G ++ G+R  +    +
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQR-VHAQSVK 229

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
           +     V     ++N+ ++ G VE+A K V +     D V W TL+   +L+
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDA-KSVFNWMETRDMVSWNTLMAGLQLN 280



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 46/224 (20%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K+     + VS++LV +Y+R G++ SA+ +F     R LVS  +M++           
Sbjct: 528 SIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMIS----------- 576

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GYAQHG + +A+  FR+M A  ++ + VT +AV+  C   
Sbjct: 577 --------------------GYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHN 616

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G +  G+     +     I   ++    ++++YS+ G L +   L+ D       +VW +
Sbjct: 617 GLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676

Query: 180 MIVGYAMH------GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++    +H       F  D L        + L+P D +   LLS
Sbjct: 677 LLGACRVHKNVELGKFSADKL--------LSLEPHDSSTYVLLS 712


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/447 (47%), Positives = 287/447 (64%), Gaps = 18/447 (4%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM----- 98
           +TT+L  YAK  E+A+AR +FD+M  +DV  WN ++ G AQ    + AL LF R+     
Sbjct: 142 ITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQ 201

Query: 99  -LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSK 155
            L  +  PN VT +A LSAC QIG+L+ G  +H +   +R I V  NV+V  ALI+MYSK
Sbjct: 202 ELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEF---ARKIGVGGNVRVCNALIDMYSK 258

Query: 156 CGSLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           CGSL  A  VF  +   D+ +V +N+ I   +MHG G DAL+LF+EM    ++P ++T+I
Sbjct: 259 CGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMPTC-IEPDEVTYI 317

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +L  C HAGLV+EG R F+ M+    + P V+HYG +V+LL RAG++ EAY  +  M  
Sbjct: 318 AVLCGCNHAGLVDEGLRVFHGMR----VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPF 373

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
             D VLW TLLGA + HG++ L E  A  L        G YVLLSN+YA+   W  V RV
Sbjct: 374 PADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVYASKARWADVGRV 433

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           R  M+   V+K PG S  E+S  +H+F+ GD  HP+ +EIY  L EI   +   GY P+T
Sbjct: 434 RDTMRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALGEIMSRIGELGYEPET 493

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VLHDIGE++KQ +L  HSEKLA+AFGLI+T PG +++++KN+R+C DCH V KLISK 
Sbjct: 494 SNVLHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNIRICGDCHVVAKLISKA 553

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            GR I++RDR RFH F +G CSC DYW
Sbjct: 554 YGRAIIIRDRARFHRFEDGQCSCSDYW 580



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 94/217 (43%), Gaps = 41/217 (18%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V++ T L++ Y+KC  L  AR VFD +  +DV  WN+++ G A       AL LF+ + 
Sbjct: 138 DVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLV 197

Query: 202 R------IRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEY- 239
           R       R  P+ +T I  LSACA  G + +G                R  N + D Y 
Sbjct: 198 RSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNVRVCNALIDMYS 257

Query: 240 -----AIEPKVEH-----------YGCMVNLLSRAGQVEEAYKLVMDMK--IEPDSVLWG 281
                A   +V H           Y   +  +S  G   +A KL  +M   IEPD V + 
Sbjct: 258 KCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMPTCIEPDEVTYI 317

Query: 282 TLLGACRLHGNIALGEKIAEYL-ISQNLANSGTYVLL 317
            +L  C   G +  G ++   + +  N+ + GT V L
Sbjct: 318 AVLCGCNHAGLVDEGLRVFHGMRVPPNVKHYGTVVDL 354


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/438 (46%), Positives = 289/438 (65%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y++ GE+  AR +FD M  +DVV W  MI G+  H L  EA+ LF+RML   V+
Sbjct: 130 NALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVD 189

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NE T ++VL  C   GAL  GR +H  ++  + I     V TALI+MYSKCG L+ AR 
Sbjct: 190 VNEATVISVLRGCADSGALSVGRKVHGIVK-EKGIDFKANVCTALIHMYSKCGCLESARE 248

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD V D+DV VW +MI G A HG  K+A++LF EM    +KP + T + +LSA  +AGL
Sbjct: 249 VFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGL 308

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG  FFN ++  Y+++P ++H+GCMV+LL++ G +EEA   +  M ++PD+V+W TL+
Sbjct: 309 VREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLI 368

Query: 285 GACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC++H +    E++ ++L  Q ++  +SG+Y+L SN+YA+ G W   A VR LM +KG+
Sbjct: 369 WACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGL 428

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            K PG S IE+   VHEF+ GD  HP +++I++ L+++   L+ EGY P+   V+ ++ +
Sbjct: 429 VKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDD 488

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K   L  HSEKLA+A+GLI T PG+ I+IVKNLR C DCH   KLISK   R I++RD
Sbjct: 489 EEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRD 548

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF NG CSC DYW
Sbjct: 549 RIRFHHFKNGDCSCKDYW 566



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 10/267 (3%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN- 89
           +   +  QR+   L T     +  G++  AR+L +     +   +N +I  Y+       
Sbjct: 10  QFIKSQNQRNFSKLFT-FAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTH 68

Query: 90  --EALVLFRRMLAEKV---EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
             +AL LF  ML       +P+  T    L +CG++   +  + +H +I N      ++ 
Sbjct: 69  HFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFI-NKMGFGFDLY 127

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  ALI+MYS+ G L  AR VFDR++ +DVV W SMI G+  H    +A+QLF  M  + 
Sbjct: 128 IQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVG 187

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           +  ++ T I +L  CA +G ++ GR+    +K E  I+ K      ++++ S+ G +E A
Sbjct: 188 VDVNEATVISVLRGCADSGALSVGRKVHGIVK-EKGIDFKANVCTALIHMYSKCGCLESA 246

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHG 291
            + V D  ++ D  +W  ++     HG
Sbjct: 247 -REVFDDVLDRDVFVWTAMIYGLACHG 272


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/444 (43%), Positives = 301/444 (67%), Gaps = 3/444 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q ++   ++++  YA+ GE+  +R++FD++E K+ V WN +I G+A+ G   EAL LF +
Sbjct: 227 QENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVK 286

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E     E T  A+L +    G+LE G+W+H+++  S   K+   VG  L++MY+K G
Sbjct: 287 MQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGK-KLVGYVGNTLLHMYAKSG 345

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLL 216
           ++ DA+ VFDR+   DVV  NSM++GYA HG GK+A++LF EM   + ++P+DITF+ +L
Sbjct: 346 NICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVL 405

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC+HAGL++EG  +F  MK +Y +EPK+ HY  +V+L  RAG +++A   + +M IEP+
Sbjct: 406 TACSHAGLLDEGLYYFELMK-KYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPN 464

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           + +WG LLGA ++H N  +G   A+ ++  +    G + LLSNIYA+ G W  VA+VR  
Sbjct: 465 ATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKE 524

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           MK+ G++KEP CS +E+ N VH F A D+ HP+  ++Y M E +N  +K  GYVP T  V
Sbjct: 525 MKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHV 584

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
              + +++K+ +L+ HSEKLA+AF L++T+PG+ I+I+KN+RVC DCH+  K +S    R
Sbjct: 585 HVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKR 644

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++RD NRFHHF +G+CSC DYW
Sbjct: 645 EIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 165/321 (51%), Gaps = 42/321 (13%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA---LVL 94
           +  LV   ++L  YAK G +  AR +FD+M  KDVV W  MI GY+Q G A+ A   LVL
Sbjct: 123 RNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVL 182

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F  M+ + + PNE    +++  CG +G+   G+ IH         + NV VG++L++MY+
Sbjct: 183 FLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWK-YGFQENVFVGSSLVDMYA 241

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           +CG L+++RLVFD +  K+ V WN++I G+A  G G++AL LF +M R     ++ T+  
Sbjct: 242 RCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSA 301

Query: 215 LLSACA-----------HAGLVNEGRRFF----NTMKDEYAIEP-------------KVE 246
           LL + +           HA ++  G++      NT+   YA                KV+
Sbjct: 302 LLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVD 361

Query: 247 HYGCMVNLLSRA--GQVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALG---- 296
              C   L+  A  G  +EA +L  +M    +IEP+ + + ++L AC   G +  G    
Sbjct: 362 VVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYF 421

Query: 297 EKIAEYLISQNLANSGTYVLL 317
           E + +Y +   L++  T V L
Sbjct: 422 ELMKKYGLEPKLSHYTTVVDL 442



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 8/199 (4%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +EP+      +L  C  +G L+ G+ +H+++ NS+  + ++ +  +++ MY+KCGSL+ A
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSK-FRNDLVIKNSILFMYAKCGSLEIA 145

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKD---ALQLFNEMCRIRLKPSDITFIGLLSAC 219
           R VFD +  KDVV W SMI GY+  G+      AL LF EM R  L+P++     L+  C
Sbjct: 146 RQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCC 205

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
              G   +G++       +Y  +  V     +V++ +R G++ E+ +LV D     + V 
Sbjct: 206 GFLGSCVDGKQIHGCCW-KYGFQENVFVGSSLVDMYARCGELRES-RLVFDELESKNEVS 263

Query: 280 WGTLLG--ACRLHGNIALG 296
           W  L+   A +  G  ALG
Sbjct: 264 WNALISGFARKGEGEEALG 282


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/521 (40%), Positives = 309/521 (59%), Gaps = 45/521 (8%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE----- 56
           V+     DL+V  +LVD+YA+ G++  A ++F  M  R +V  T M+T Y +Q E     
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY-EQAERPLKA 217

Query: 57  -----------------------------------VAAARVLFDDMEEKDVVCWNVMIDG 81
                                              ++ AR++FD MEE++ + WN M+ G
Sbjct: 218 LMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSG 277

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           Y Q+G   +AL LF +M A + +PN VTA+ ++SAC  +G+   GR +H+++ +S+ + +
Sbjct: 278 YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK-MDI 336

Query: 142 NVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           +  +  A+++MY KCG L  A  +F+   + ++DV  WN +I GY +HG GK+AL+LF+ 
Sbjct: 337 DTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSR 396

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M    ++P+DITF  +LSAC+HAGL++EGR+ F  M  + ++ P+++HY CMV++L RAG
Sbjct: 397 MQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAG 455

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
            + EA++L+  +   P   +WG LL ACR+HGN  LGE  A  L      ++G YVL+SN
Sbjct: 456 FLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSN 515

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           IYAA   W  V  VR  MK +G++K    S IE   +VH F   D   P  +E+Y  +E 
Sbjct: 516 IYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVES 575

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           +   +K  GYVP    VLHD+  + K++ L  HSEKLAVAFG++    G  I++ KNLRV
Sbjct: 576 LAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRV 635

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH  FK IS   GRKI++RD NRFHHF  G CSCGDYW
Sbjct: 636 CSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 23/281 (8%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDM--------EEKDVVCWNVMIDGYAQHGLANEALVLF 95
           L  ++  Y+K G++ +AR LFD          +  +    N M+  YA  G + EA+ L+
Sbjct: 61  LARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLY 120

Query: 96  RRMLAEKVEPNEVTAVAVLSACG-QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
             M    V  N  T   VL  C  ++GA+  G  +H  +  +     ++ V  AL++MY+
Sbjct: 121 IYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRT-GFGSDLFVEAALVDMYA 178

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           KCG + DA  VFDR+  +DVV W +MI  Y        AL LF +M        +IT I 
Sbjct: 179 KCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAIS 238

Query: 215 LLSACAHAG----LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           + SA    G     ++  R  F+ M++   I      +  M++  ++ G+  +A  L   
Sbjct: 239 VASAVGQLGDGRMAISRARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQ 293

Query: 271 MK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           M+    +P+ V    ++ AC   G+  LG K+  ++IS  +
Sbjct: 294 MQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKM 334


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/507 (40%), Positives = 303/507 (59%), Gaps = 39/507 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG----- 55
           T +  LD +++V+ S + +YAR G    A ++F  M  R +VS   M++ +A  G     
Sbjct: 38  TARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRA 97

Query: 56  ---------------------------------EVAAARVLFDDMEEKDVVCWNVMIDGY 82
                                            ++A  + +FD+M  K ++ WN M+  Y
Sbjct: 98  MDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVY 157

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
             + +  EA+ LF RM  + +EP+ VT   VL +CG++ AL  G+ IH  I+  R +  +
Sbjct: 158 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKR-RRMCSS 216

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           + +  AL++MY+ CG LK+AR VFD +  +DVV W S+I  Y  HG G++A+ LF +MC 
Sbjct: 217 MLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCG 276

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
             L+P  I F+ +L+AC+HAGL++ G+ +F +M  E+ I PK+EHY CMV+LL RAG + 
Sbjct: 277 QGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIR 336

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
           EAY  +M M I+P+  +WG LLGACR+H N+ +G   A+ L+      +G YVLLSNIYA
Sbjct: 337 EAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYA 396

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
             G W  V+ VR++M+ KG++K PG S+ EL ++VH F  GD  HP+SK IY  L E+  
Sbjct: 397 RAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLR 456

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPD 442
            ++  GY P+ +  LHD+ E+ K+  L VHSEKLA+AF LI+T PGT I+I  NLR C D
Sbjct: 457 RIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSD 516

Query: 443 CHAVFKLISKFTGRKIMMRDRNRFHHF 469
           CH   KLIS   GR+I+++D NR H+ 
Sbjct: 517 CHHAAKLISTIAGREIILKDVNRIHYM 543



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 15/229 (6%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P  +       +C     L  GR IHS       +  NV V  + I+MY++CG   DA  
Sbjct: 10  PGPLHLPVGFKSCAATDGLVLGRQIHSSTAR-LGLDGNVFVAHSAISMYARCGRPDDAYQ 68

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAG 223
           +F+ +  +DVV WN+MI G+A  G    A+ +F E+  ++  KP   T   +L +   A 
Sbjct: 69  MFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKAR 128

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
           +  E       + DE   +  +  +  M+ + +      EA +L M M+   IEPD+V  
Sbjct: 129 V--EDIALLKGVFDEMRFKGLIS-WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 185

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIG 325
            T+L +C     ++LG++I E +  + + +S   +LL N    +YA  G
Sbjct: 186 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSS---MLLENALMDMYANCG 231


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/434 (46%), Positives = 280/434 (64%), Gaps = 5/434 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +LT Y K GE+   R LFD+M  K ++ WN MI+GYAQ+GLAN  L L++ M ++   P+
Sbjct: 154 LLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPD 213

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V VLS+C  +GAL  G+ +   +E       N  +  AL+NMY++CG+LK AR +F
Sbjct: 214 PLTLVGVLSSCAHLGALSVGKEVERKMEGF-GFSSNPFLNNALVNMYARCGNLKKARDIF 272

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  K VV W ++I GY MHG G+ A+ LF+EM R  +KP    F+ +LSAC+HAGL N
Sbjct: 273 DGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTN 332

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G  +F  M+ +Y + P  EHY CMV+LL RAG++ EA +L+  M++  D  LWG LLGA
Sbjct: 333 KGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGA 392

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C++H N+ L E   E +I     N+G YVLLSN+Y   GN +G+ RVR LM+++ ++K+P
Sbjct: 393 CKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDP 452

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           GCS +E   +VH F AGD  HP++ EIY  L E+   +K      +     H+  E +  
Sbjct: 453 GCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKND---HERRE-EYL 508

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           NS+ VHSEKLAVAF L++T+  T I I+KNLR+C DCH   KL+SK   R+ ++RD  RF
Sbjct: 509 NSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRF 568

Query: 467 HHFVNGTCSCGDYW 480
           HHF NG CSC +YW
Sbjct: 569 HHFKNGFCSCKEYW 582



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 23/280 (8%)

Query: 45  TTMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T++++ Y K   +  AR LFD+     K  VC+N ++ GYA +    + +VLF  M    
Sbjct: 49  TSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELG 108

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           VE N VT + ++  CG  G L  G  +H +      + ++  VG  L+ MY K G +   
Sbjct: 109 VEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKF-GLDMDSSVGNCLLTMYVKSGEIDCG 167

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R +FD +  K ++ WN+MI GYA +G   + L+L+ EM      P  +T +G+LS+CAH 
Sbjct: 168 RKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHL 227

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYG---------CMVNLLSRAGQVEEAYKLVMDMKI 273
           G ++ G+           +E K+E +G          +VN+ +R G +++A  +   M +
Sbjct: 228 GALSVGKE----------VERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPV 277

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           +   V W  ++G   +HG   +   + + +I   +   GT
Sbjct: 278 K-SVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGT 316



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 47/270 (17%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML     PN  T    + +C  +    +G+ +H ++  +  + +   V T+LI+MY KC 
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCL-LEPFVQTSLISMYGKCS 59

Query: 158 SLKDARLVFDR--VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
            + +AR +FD    + K  V +NS++ GYA++   KD + LF EM  + ++ + +T +GL
Sbjct: 60  LIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGL 119

Query: 216 LSACA-----------------------------------HAGLVNEGRRFFNTMKDEYA 240
           +  C                                     +G ++ GR+ F+ M  +  
Sbjct: 120 VQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGL 179

Query: 241 IEPKVEHYGCMVNLLSRAG---QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           I      +  M+N  ++ G    V E YK +      PD +    +L +C   G +++G+
Sbjct: 180 IT-----WNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGK 234

Query: 298 KIAEYLISQNL-ANSGTYVLLSNIYAAIGN 326
           ++   +      +N      L N+YA  GN
Sbjct: 235 EVERKMEGFGFSSNPFLNNALVNMYARCGN 264


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/448 (45%), Positives = 286/448 (63%), Gaps = 4/448 (0%)

Query: 37  PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVL 94
           P   L+ +  ++  Y+K     AAR +FD +  KD  VV W V+I G AQHG ANEAL L
Sbjct: 405 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 464

Query: 95  FRRMLAEK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
           F +ML     V PN  T    L AC ++GAL  GR IH+Y+  +R     + V   LI+M
Sbjct: 465 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 524

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           YSK G +  AR+VFD ++ ++ V W S++ GY MHG G++ALQ+F EM ++ L P  +TF
Sbjct: 525 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTF 584

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +L AC+H+G+V++G  +FN M  ++ + P  EHY CMV+LLSRAG+++EA +L+  M 
Sbjct: 585 VVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 644

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
           ++P   +W  LL ACR++ N+ LGE  A  L+     N G+Y LLSNIYA    W  VAR
Sbjct: 645 MKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVAR 704

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
           +R LMK  G++K PGCS ++       F AGD  HP S++IY +L ++   +KA GYVP 
Sbjct: 705 IRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD 764

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
            +  LHD+ +++K + L  HSEKLA+A+G+++T PG  I+I KNLR C DCH+ F  IS 
Sbjct: 765 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISI 824

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I++RD +RFHHF NG+CSC  YW
Sbjct: 825 IIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/312 (34%), Positives = 167/312 (53%), Gaps = 29/312 (9%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            ++  L +D++V  ++VD+YA+ G +  A K+F  M  + +VS   M+T Y++ G    A
Sbjct: 257 ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDA 316

Query: 61  RVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
             LF+ + E+    +VV W+ +I GYAQ GL  EAL +FR+M     EPN VT V++LS 
Sbjct: 317 LGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSG 376

Query: 117 CGQIGALESG--------RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           C   G L  G        +WI +  EN  +   ++ V  ALI+MYSKC S K AR +FD 
Sbjct: 377 CALAGTLLHGKETHCHAIKWILNLDEN--DPGDDLMVINALIDMYSKCKSPKAARAMFDL 434

Query: 169 VNDKD--VVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSACAHAGL 224
           +  KD  VV W  +I G A HG   +AL+LF++M +    + P+  T    L ACA  G 
Sbjct: 435 IPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGA 494

Query: 225 VNEGRRFFNTMKDEYAIEPKVEH-----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +  GR+        Y +  + E        C++++ S++G V+ A ++V D   + + V 
Sbjct: 495 LRFGRQI-----HAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA-RVVFDNMHQRNGVS 548

Query: 280 WGTLLGACRLHG 291
           W +L+    +HG
Sbjct: 549 WTSLMTGYGMHG 560



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 113/194 (58%), Gaps = 5/194 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAE-K 102
           +++ Y + G    AR +FD+M E+   D+V WN ++  Y Q G +  A+ +F RM  +  
Sbjct: 167 LVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLG 226

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + P+ V+ V VL AC  +GA   G+ +H Y   S  +  +V VG A+++MY+KCG +++A
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVFVGNAVVDMYAKCGMMEEA 285

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+R+  KDVV WN+M+ GY+  G   DAL LF ++   +++ + +T+  +++  A  
Sbjct: 286 NKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQR 345

Query: 223 GLVNEGRRFFNTMK 236
           GL  E    F  M+
Sbjct: 346 GLGFEALDVFRQMR 359



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           V  WN +I      G   + L L+RRM      P+  T   VL ACG+I +   G  +H+
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHG 188
            +  S   + NV VG  L++MY +CG+ ++AR VFD + ++   D+V WNS++  Y   G
Sbjct: 151 VVFAS-GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 189 FGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
               A+++F  M   + ++P  ++ + +L ACA  G  + G++           E  V  
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFV 268

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC----RLHGNIALGEKIAEYL 303
              +V++ ++ G +EEA K+   MK++ D V W  ++       R    + L EKI E  
Sbjct: 269 GNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 327

Query: 304 ISQNL 308
           I  N+
Sbjct: 328 IELNV 332



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 31/153 (20%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L+V+  L+D+Y++ GDV +A  +F  M QR+ VS T+++T                    
Sbjct: 515 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMT-------------------- 554

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                      GY  HG   EAL +F  M    + P+ VT V VL AC   G ++ G   
Sbjct: 555 -----------GYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINY 603

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            + +     +    +    ++++ S+ G L +A
Sbjct: 604 FNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEA 636


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/477 (42%), Positives = 301/477 (63%), Gaps = 3/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            DK  +V  SL+  Y   GDV +A K+   M  + ++S T+++  Y++  ++ +A  +F 
Sbjct: 178 FDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFA 237

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
               KD+V W  M+ GYAQ+ +  +AL  F +M    +  +EV+    +SAC Q+GA+  
Sbjct: 238 LCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRR 297

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
             WI   I +   +  NV VG+ L++MY+KCG + +A  VF+ + +K+V  ++SMIVG A
Sbjct: 298 AVWIQE-IADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLA 356

Query: 186 MHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            HG   DA+ LFN+M R   ++P+ +TFIG+L+AC+HAG+V EGR +F  MKD Y I P 
Sbjct: 357 SHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPS 416

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV+LL RAG V EA  LV  M +EP   +WG LLGACR+HGN  + +  A++L 
Sbjct: 417 ADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLF 476

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK-VHEFLAG 363
                  G YVLLSN  A+ G WD V++VR LM+ +G++K+P  SS E  +  VH+F AG
Sbjct: 477 KLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAG 536

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP   EI   L E+   LK  GYVP    V++++ +++K+  L  HSEKLA++FGL+
Sbjct: 537 DNTHPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLL 596

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + +  +SI+IVKNLR+C DCH   +L+SK    +I++RD  RFHHF +G CSCG +W
Sbjct: 597 TLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/431 (48%), Positives = 286/431 (66%), Gaps = 2/431 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA  G +  A  +F+ ++ KDVV W  MI  Y  +GLANEAL +F  M    VEP+ +T 
Sbjct: 358 YADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITL 417

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V++LSA   + AL  G+ IH +I   +   +      +L++MY+ CGSL++A  VF    
Sbjct: 418 VSILSAAASLSALNKGKEIHGFIFR-KGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR 476

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            K +V+W +MI  Y MHG GK A++LF+ M   +L P  ITF+ LL AC+H+GL+NEG+R
Sbjct: 477 SKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKR 536

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
              TMK +Y +EP  EHY C+V+LL RA  +EEAY  V  M+IEP + +W   LGACR+H
Sbjct: 537 LLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIH 596

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
            N  LGE  A+ L+  +  + G+YVL+SN++AA G W  V  VR  MK  G++K PGCS 
Sbjct: 597 SNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSW 656

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSL 409
           IE+ NKVH FL  D  HP+S +IY  L +I   L+ E GYVPQT++VLH++G+++K   L
Sbjct: 657 IEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQML 716

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSE+LA+A+GL+ST  GT I+I KNLRVC DCH   KL+SKF  R++++RD +RFHHF
Sbjct: 717 YGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHF 776

Query: 470 VNGTCSCGDYW 480
            +G CSCGD+W
Sbjct: 777 EDGVCSCGDFW 787



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 164/331 (49%), Gaps = 35/331 (10%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++ YAK  ++  AR LFD M E+ DVV WN +I  Y+ +G   EAL LFR M    V 
Sbjct: 50  SLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVG 109

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T VA L AC      + G  IH+ I  S  + ++V V  AL+ M+ + G +  A  
Sbjct: 110 ANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQV-LDVYVANALVAMHVRFGKMSYAAR 168

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +++KD + WNSMI G+  +G   +ALQ F  +    LKP +++ I +L+A    G 
Sbjct: 169 IFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGY 228

Query: 225 VNEGR---------------RFFNTMKDEYAIEPKVEHYGC----MVN--LLSRAGQV-- 261
           +  G+               R  NT+ D Y+    V + G     M+N  L+S    +  
Sbjct: 229 LLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAA 288

Query: 262 -------EEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
                   EA KL+  ++   ++ D+++ G+ L AC     ++  +++  Y + + L++ 
Sbjct: 289 YAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDL 348

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
               ++ ++YA  GN +   R+   +K K V
Sbjct: 349 MMQNMIIDVYADCGNINYATRMFESIKCKDV 379



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 166/335 (49%), Gaps = 46/335 (13%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  + + G+++ A  +FD+++EKD + WN MI G+ Q+GL NEAL  F  +    ++P+
Sbjct: 153 LVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPD 212

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EV+ +++L+A G++G L +G+ IH+Y   +  +  N+++G  LI+MYSKC  +  A LVF
Sbjct: 213 EVSLISILAASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNTLIDMYSKCCCVAYAGLVF 271

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG-LLSAC------ 219
           D++ +KD++ W ++I  YA +    +AL+L  ++ + +    D   IG  L AC      
Sbjct: 272 DKMINKDLISWTTVIAAYAQNNCHTEALKLLRKV-QTKGMDVDTMMIGSTLLACSGLRCL 330

Query: 220 ----------------------------AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
                                       A  G +N   R F ++K +      V  +  M
Sbjct: 331 SHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCK-----DVVSWTSM 385

Query: 252 VNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           ++     G   EA   + L+ +  +EPDS+   ++L A      +  G++I  ++  +  
Sbjct: 386 ISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGF 445

Query: 309 ANSGTYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
              G+ V  L ++YA  G+ +   +V    + K +
Sbjct: 446 MLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSL 480



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V  +  T   VL ACG +  +  G  IH  I       + V V  +L++MY+KC  +  A
Sbjct: 6   VPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSI-VFVANSLVSMYAKCNDILGA 64

Query: 163 RLVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           R +FDR+N++ DVV WNS+I  Y+++G   +AL LF EM +  +  +  T +  L AC  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 222 AGLVNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           +     G       +K    ++  V +   +V +  R G++  A + + D   E D++ W
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVAN--ALVAMHVRFGKMSYAAR-IFDELDEKDNITW 181

Query: 281 GTLLGACRLHG 291
            +++     +G
Sbjct: 182 NSMIAGFTQNG 192



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---- 70
           SLVD+YA  G + +A K+F     +SLV  TTM+  Y   G   AA  LF  ME++    
Sbjct: 454 SLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIP 513

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEP 105
           D + +  ++   +  GL NE   L   M  + ++EP
Sbjct: 514 DHITFLALLYACSHSGLINEGKRLLETMKCKYQLEP 549


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/439 (46%), Positives = 302/439 (68%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT+L  YA+ G V  A  +FD M  K+VV W+ MI  Y+++G   EAL LFR+M+ E  
Sbjct: 221 MTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQ 280

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +  PN VT V+VL AC  + ALE G+ +H YI   R +   + V +AL+ +Y++CG+L+ 
Sbjct: 281 DLLPNSVTMVSVLQACAALAALEQGKLMHGYILR-RGLDSILPVVSALVTVYARCGNLEL 339

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
              VF+R+  +DVV WNS+I  Y +HGFG+ A+Q+F EM    L PS I+F+ +L AC+H
Sbjct: 340 GHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSH 399

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV EG+  F +M   + I P VEHY CMV+LL RA +++EA K++ DM+IEP   +WG
Sbjct: 400 AGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWG 459

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG+CR+H N+ L E+    L      N+G YVLL++IYA    W+ V RV+ L++ +G
Sbjct: 460 SLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARG 519

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK PG S IE+  K++ F++ D  +P+ ++++ +L +++  +K +GYVP T++VL+D+ 
Sbjct: 520 LQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLD 579

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            ++K+  +  HSEKLA+AFGLI+++ G +I+I KNLR+C DCH+V K ISKF  R+I++R
Sbjct: 580 PEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVR 639

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFH F +G CSCGDYW
Sbjct: 640 DVNRFHLFQDGVCSCGDYW 658



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 138/275 (50%), Gaps = 13/275 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y++   +  AR +FD   ++ +  WN +       G   E L L+RRM    V 
Sbjct: 117 TKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVP 176

Query: 105 PNEVTAVAVLSAC----GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            +  T   VL AC      +  L +GR IH +I      + +V + T L++MY++ G + 
Sbjct: 177 SDRFTYTYVLKACVASEAFVSLLLNGREIHGHILR-HGFEGHVHIMTTLLDMYARFGCVL 235

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSA 218
           +A  VFD++  K+VV W++MI  Y+ +G   +AL+LF +M      L P+ +T + +L A
Sbjct: 236 NASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQA 295

Query: 219 CAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           CA    + +G+     +  +   +I P V     +V + +R G +E  +++   M+ + D
Sbjct: 296 CAALAALEQGKLMHGYILRRGLDSILPVV---SALVTVYARCGNLELGHRVFERME-KRD 351

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
            V W +L+ +  +HG      +I + +I Q L+ S
Sbjct: 352 VVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPS 386



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I    + G  N+AL    ++L+++  P + T   ++ +C +  +L  G  +H ++ +
Sbjct: 51  NPLIQSLCKQGNLNQAL----QVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
             + + +  + T LINMYS+  S+ +AR VFD+   + + VWN++     + G+G++ L 
Sbjct: 107 DGSDQ-DPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLD 165

Query: 196 LFNEMCRIRLKPSDITFIGLLSAC----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           L+  M RI +     T+  +L AC    A   L+  GR     +   +  E  V     +
Sbjct: 166 LYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHIL-RHGFEGHVHIMTTL 224

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---L 308
           +++ +R G V  A ++   M ++ + V W  ++     +G      ++   ++ +N   L
Sbjct: 225 LDMYARFGCVLNASRVFDQMPVK-NVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLL 283

Query: 309 ANSGTYV 315
            NS T V
Sbjct: 284 PNSVTMV 290


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/469 (41%), Positives = 301/469 (64%), Gaps = 2/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +   ++D+Y + G    A ++F  M  +++VS  ++   + + G+V +A  +F+ + E++
Sbjct: 370 IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERN 429

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
            V WN MI G  Q  L  +A+ LFR M  E ++ + VT + + SACG +GA E  +W+H+
Sbjct: 430 AVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHT 489

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YIE +  I  ++++ TAL++M+++CG  + A  VF+++ ++DV  W + I   AM G G+
Sbjct: 490 YIEKN-GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGE 548

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            A  LFN+M    +KP  + F+ +L+AC+H G V +G   F+ M+D + I P++EHYGCM
Sbjct: 549 GATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCM 607

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL RAG + EA+ L+  M +EP+ V+WG+LL ACR+H N+ +    AE +       +
Sbjct: 608 VDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRA 667

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           G +VLLSNIYA+ G W  VARVR  ++EKGV+K PG SS++++  +HEF +GD  HP+  
Sbjct: 668 GVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMT 727

Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
            I +ML+E+N      G++P    VL D+ E++K+  L  HSEKLA+AFGLI+T     I
Sbjct: 728 HIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPI 787

Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++VKNLR+C DCH+  K+ S    R+I++RD NRFH F  G CSC DYW
Sbjct: 788 RVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 133/247 (53%), Gaps = 11/247 (4%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YA+ G +     +F+ M E++VV W  +I GYA+     EA+ LF  M+   + P+ VT 
Sbjct: 176 YAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTM 235

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V V+SAC ++  L+ G  + +YI     +K+N  +  AL++MY KCG++  A+ +FD   
Sbjct: 236 VCVISACAKLRDLDMGERVCAYI-GELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECV 294

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           D+++V++N+++  YA  G  ++AL + +EM +   +P  +T +  +SA A   LV+    
Sbjct: 295 DRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVD---L 349

Query: 231 FFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           F+  +   Y I   +E +      ++++  + G+ E A + V D+      V W +L   
Sbjct: 350 FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACR-VFDLMSNKTVVSWNSLTAG 408

Query: 287 CRLHGNI 293
              +G++
Sbjct: 409 FIRNGDV 415



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 34/282 (12%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V +  ++  Y K G + AA+ LFD+  ++++V +N ++  YA+ GLA EAL +   ML +
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              P+ VT ++ +SA  Q+  L  G+  H Y+  +  ++    +G  +I+MY KCG  + 
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRN-GLEGWDSIGNVIIDMYMKCGKPEM 386

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHG-------------------------------FG 190
           A  VFD +++K VV WNS+  G+  +G                                 
Sbjct: 387 ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLF 446

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           +DA++LF EM    +K   +T +G+ SAC + G   E  ++ +T  ++  I   +     
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTA 505

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +V++ +R G  + A ++   M  E D   W   +G   + GN
Sbjct: 506 LVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEGN 546



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 3/209 (1%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I GY+  GL  EA++L+ RML   V PN  T   VLS C +I A   G  +H  +  
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
              ++ +V +   LI+ Y++CG +     VF+ +++++VV W S+I GYA     K+A+ 
Sbjct: 160 -MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVS 218

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           LF EM    ++PS +T + ++SACA    ++ G R    +  E  ++        +V++ 
Sbjct: 219 LFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI-GELGLKLNKVMVNALVDMY 277

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            + G ++ A +L  D  ++ + VL+ T+L
Sbjct: 278 MKCGAIDAAKRL-FDECVDRNLVLYNTIL 305



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 39/183 (21%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ ++T+LVD++AR GD  SA ++F  M +R                             
Sbjct: 499 DMRLNTALVDMFARCGDPQSAMQVFNKMTER----------------------------- 529

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
             DV  W   I   A  G    A  LF +ML + V+P+ V  V VL+AC   G +E G  
Sbjct: 530 --DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLH 587

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN----DKDVVVWNSMIVGY 184
           I S +E+   I   ++    ++++  + G L++A   FD +     + + VVW S++   
Sbjct: 588 IFSLMED-HGISPQIEHYGCMVDLLGRAGLLREA---FDLIKSMPMEPNDVVWGSLLAAC 643

Query: 185 AMH 187
            +H
Sbjct: 644 RVH 646



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query: 158 SLKDARLVF-----DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           SL  AR  F     D  +D  + + NS+I GY+  G G++A+ L+  M  + + P+  TF
Sbjct: 75  SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
             +LS C       EG +   ++  +  +E  V    C+++  +  G ++  +K+   M 
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVV-KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193

Query: 273 IEPDSVLWGTLL 284
            E + V W +L+
Sbjct: 194 -ERNVVSWTSLI 204


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/469 (43%), Positives = 309/469 (65%), Gaps = 14/469 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           ++ D +    L+       DV   E + + + +    SL     ++L  YA  G+VA+A 
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M EKD+V WN +I+G+A++G   EAL L+  M ++ ++P+  T V++LSAC +IG
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236

Query: 122 ALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           AL  G+ +H Y+     IKV    N+     L+++Y++CG +++A+ +FD + DK+ V W
Sbjct: 237 ALTLGKRVHVYM-----IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
            S+IVG A++GFGK+A++LF  M     L P +ITF+G+L AC+H G+V EG  +F  M+
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 351

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +EY IEP++EH+GCMV+LL+RAGQV++AY+ +  M ++P+ V+W TLLGAC +HG+  L 
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E     ++     +SG YVLLSN+YA+   W  V ++R  M   GV+K PG S +E+ N+
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNR 471

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEFL GD  HP+S  IY  L+E+ G L++EGYVPQ   V  D+ E++K+N++  HSEK+
Sbjct: 472 VHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKI 531

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           A+AF LIST   + I +VKNLRVC DCH   KL+SK   R+I++RDR+R
Sbjct: 532 AIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 5/234 (2%)

Query: 60  ARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSAC 117
           A  +F  +E+  +V  WN +I GYA+ G +  A  L+R M ++  VEP+  T   ++ A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +  +  G  IHS +  S      + V  +L+++Y+ CG +  A  VFD++ +KD+V W
Sbjct: 132 TTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           NS+I G+A +G  ++AL L+ EM    +KP   T + LLSACA  G +  G+R    M  
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI- 249

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  +   +     +++L +R G+VEEA K + D  ++ +SV W +L+    ++G
Sbjct: 250 KVGLTRNLHSSNVLLDLYARCGRVEEA-KTLFDEMVDKNSVSWTSLIVGLAVNG 302



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 33/189 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L+ S  L+DLYAR G V  A+ LF                            
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF---------------------------- 280

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
              D+M +K+ V W  +I G A +G   EA+ LF+ M + E + P E+T V +L AC   
Sbjct: 281 ---DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 337

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +     I+  ++    ++++ ++ G +K A   +       +VV+W +
Sbjct: 338 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 397

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 398 LLGACTVHG 406



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 51/220 (23%)

Query: 162 ARLVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSA 218
           A  VF ++    +V +WN++I GYA  G    A  L+ EM R+   ++P   T+  L+ A
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREM-RVSGLVEPDTHTYPFLIKA 130

Query: 219 C-----------------------------------AHAGLVNEGRRFFNTMKDEYAIEP 243
                                               A+ G V    + F+ M ++  +  
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA- 189

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIA 300
               +  ++N  +  G+ EEA  L  +M    I+PD     +LL AC   G + LG+++ 
Sbjct: 190 ----WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVH 245

Query: 301 EYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
            Y+I   L  N  +  +L ++YA  G    V   +TL  E
Sbjct: 246 VYMIKVGLTRNLHSSNVLLDLYARCGR---VEEAKTLFDE 282


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/434 (45%), Positives = 282/434 (64%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++ CYAK G +  +  LF+ + +++ V WN +I  Y Q G    AL LF  ML  +V+  
Sbjct: 289 LMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQAT 348

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EVT  ++L AC  + ALE G  +H     +   + +V VG ALI+MY+KCGS+KDAR +F
Sbjct: 349 EVTYSSILRACATLAALELGLQVHCLTAKTIYGQ-DVAVGNALIDMYAKCGSIKDARFMF 407

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D ++ +D V WN++I GY+MHG G +A+++FN M   + KP ++TF+G+LSAC++ G ++
Sbjct: 408 DMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLD 467

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+++F +MK +Y IEP +EHY CMV L+ R+G +++A K + D+  EP  ++W  LLGA
Sbjct: 468 EGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H ++ LG   A+ ++     +  ++VLLSNIYA    W  VA VR  MK KGV+KEP
Sbjct: 528 CVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEP 587

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S IE    VH F   D  H   K I  MLE +N   +  GY PQ   VL D+ + +K+
Sbjct: 588 GLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKE 647

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L +HSE+LA+AFGL+    G  I+I+KNLR+C DCH+V KLISK  GR I++RD NRF
Sbjct: 648 RLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRF 707

Query: 467 HHFVNGTCSCGDYW 480
           HHF NG+CSC DYW
Sbjct: 708 HHFENGSCSCADYW 721



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 146/291 (50%), Gaps = 36/291 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K + ++DLYV   L++LY R GD   A + F                            
Sbjct: 174 LKTNYERDLYVGVGLLELYTRCGDNDDAWRAFG--------------------------- 206

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
               DM + DV+ W+ MI  +AQ G + +AL +F +M    V PN+ T  +VL A   I 
Sbjct: 207 ----DMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIE 262

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +L+  + IH +   +  +  +V V  AL+  Y+KCG ++ +  +F+ ++D++ V WN++I
Sbjct: 263 SLDLSKTIHGHALKA-GLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTII 321

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYA 240
           V Y   G G+ AL LF+ M R +++ +++T+  +L ACA    +  G +    T K  Y 
Sbjct: 322 VSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYG 381

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  V +   ++++ ++ G +++A + + DM    D V W  ++    +HG
Sbjct: 382 QDVAVGN--ALIDMYAKCGSIKDA-RFMFDMLDLRDKVSWNAIICGYSMHG 429



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 1/176 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+  G V+ AR +FD++  KD+V W  MI  YA++   +EAL  F +M     +
Sbjct: 85  TALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFK 144

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T   VL AC  +   ++G+ +H  +  + N + ++ VG  L+ +Y++CG   DA  
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKT-NYERDLYVGVGLLELYTRCGDNDDAWR 203

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            F  +   DV+ W+ MI  +A  G  + AL++F +M R  + P+  TF  +L A A
Sbjct: 204 AFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA 259



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 15/229 (6%)

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++FD+M E++ V +  +I GYAQ     EA  LF R+  E  E N      VL     + 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 122 ALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             E GR +H  +     +KV    N  +GTALI+ YS  G +  AR VFD ++ KD+V W
Sbjct: 61  WAELGRIVHGCV-----LKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSW 115

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMK 236
             MI  YA +    +AL+ F++M     KP++ TF G+L AC      + G+    + +K
Sbjct: 116 TGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLK 175

Query: 237 DEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             Y  +  V   G  ++ L +R G  ++A++   DM  + D + W  ++
Sbjct: 176 TNYERDLYV---GVGLLELYTRCGDNDDAWRAFGDMP-KNDVIPWSFMI 220


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/475 (40%), Positives = 295/475 (62%), Gaps = 2/475 (0%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D   +   SLV LY + G    A  +F  MP + LVS   +L+ Y   G +  A+++F +
Sbjct: 317 DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M+EK+++ W +MI G A++G   E L LF  M  E  EP +      + +C  +GA  +G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           +  H+ +        ++  G ALI MY+KCG +++AR VF  +   D V WN++I     
Sbjct: 437 QQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG G +A+ ++ EM +  ++P  IT + +L+AC+HAGLV++GR++F++M+  Y I P  +
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGAD 555

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY  +++LL R+G+  +A  ++  +  +P + +W  LL  CR+HGN+ LG   A+ L   
Sbjct: 556 HYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              + GTY+LLSN++AA G W+ VARVR LM+++GV+KE  CS IE+  +VH FL  D  
Sbjct: 616 IPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTS 675

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLIST 425
           HP+++ +Y+ L+++   ++  GYVP T  VLHD+  +  K++ L  HSEK+AVAFGL+  
Sbjct: 676 HPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKL 735

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            PGT+I+I KNLR C DCH  F+ +S    R I++RDR RFHHF NG CSCG++W
Sbjct: 736 PPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 40/333 (12%)

Query: 12  VSTSLVDLYARGGD----VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           VS +LV +Y++       + SA K+F  + ++   S TTM+T Y K G       L + M
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245

Query: 68  EEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ++   +V +N MI GY   G   EAL + RRM++  +E +E T  +V+ AC   G L+ G
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY-- 184
           + +H+Y+   R    +     +L+++Y KCG   +AR +F+++  KD+V WN+++ GY  
Sbjct: 306 KQVHAYV--LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVS 363

Query: 185 -----------------------------AMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
                                        A +GFG++ L+LF+ M R   +P D  F G 
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + +CA  G    G+++   +  +   +  +     ++ + ++ G VEEA ++   M    
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-L 481

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           DSV W  L+ A   HG+ A    + E ++ + +
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 161/360 (44%), Gaps = 71/360 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           + F      ++   L+D+Y +  ++  A +LF  + +   ++ TTM++ Y   G++  AR
Sbjct: 41  ITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLAR 100

Query: 62  VLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA--- 116
            +F+      +D V +N MI G++ +     A+ LF +M  E  +P+  T  +VL+    
Sbjct: 101 GVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLAL 160

Query: 117 -------CGQI--GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS----LKDAR 163
                  C Q    AL+SG     YI           V  AL+++YSKC S    L  AR
Sbjct: 161 VADDEKQCVQFHAAALKSGA---GYI---------TSVSNALVSVYSKCASSPSLLHSAR 208

Query: 164 LVFDRVNDKD--------------------------------VVVWNSMIVGYAMHGFGK 191
            VFD + +KD                                +V +N+MI GY   GF +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF--FNTMKDEYAIEPKVEHY- 248
           +AL++   M    ++  + T+  ++ ACA AGL+  G++   +   +++++      H+ 
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----HFD 323

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             +V+L  + G+ +EA  +   M  + D V W  LL      G+I   + I + +  +N+
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D  L    +L+ +YA+ G V  A ++F TMP            C           
Sbjct: 444 LKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP------------CL---------- 481

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                    D V WN +I    QHG   EA+ ++  ML + + P+ +T + VL+AC   G
Sbjct: 482 ---------DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNSM 180
            ++ GR     +E    I         LI++  + G   DA  V + +  K    +W ++
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 181 IVGYAMHG 188
           + G  +HG
Sbjct: 593 LSGCRVHG 600


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/438 (45%), Positives = 279/438 (63%), Gaps = 1/438 (0%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V  T +L  Y K G +  AR +FD M +KD+V W  MI    + G   E   LFR ++  
Sbjct: 232 VVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGS 291

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V PNE T   VL+AC  + A + G+ +H Y+        +    +AL+++YSKCG+ + 
Sbjct: 292 GVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSF-AASALVHVYSKCGNTET 350

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           AR VF+++   D+V W S+IVGYA +G    ALQ F  + R   KP +ITF+G+LSAC H
Sbjct: 351 ARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTH 410

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV+ G  +F+++K+++ +    +HY C+++LL+R+G+ +EA  ++ +M ++PD  LW 
Sbjct: 411 AGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWA 470

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG CR+HGNI L E+ A+ L      N  TY+ LSNIYA  G W    +VR  M  +G
Sbjct: 471 SLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRG 530

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           + K+PG S IE+  +VH FL GD  HPK  +I+  L E++  +K EGYV  T  VLHD+ 
Sbjct: 531 IVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVE 590

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E+QK+ ++  HSEKLAVAFG+IST PGT IK+ KNLR C DCH   K ISK   RKI++R
Sbjct: 591 EEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVR 650

Query: 462 DRNRFHHFVNGTCSCGDY 479
           D NRFH FV+G+CSC DY
Sbjct: 651 DSNRFHCFVDGSCSCKDY 668



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 156/296 (52%), Gaps = 4/296 (1%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           + +S  L+ +YA+ G ++ A+ LF  +PQ+ L S  TM++ YA  G +  AR LFD+M  
Sbjct: 98  IVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPH 157

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRW 128
           +D   WN +I GY   G   EAL LFR M   E    N  T  + L+A   I +L  G+ 
Sbjct: 158 RDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKE 217

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH Y+  S  ++++  V TAL+++Y KCGSL +AR +FD++ DKD+V W +MI      G
Sbjct: 218 IHGYLIRS-GLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDG 276

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             K+   LF ++    ++P++ TF G+L+ACA       G+     M      +P     
Sbjct: 277 RKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMT-RVGYDPFSFAA 335

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
             +V++ S+ G  E A ++   M   PD V W +L+     +G   +  +  E L+
Sbjct: 336 SALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQPDMALQFFESLL 390



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 5/123 (4%)

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           +I+ + Q     EA+    R+     +P+      +++AC +   LE G+ +H++ + S 
Sbjct: 38  IIELFCQQNRLKEAVDYLHRI----PQPSPRLYSTLIAACLRHRKLELGKRVHAHTKAS- 92

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           N    + +   LI+MY+KCGSL DA+++FD +  KD+  WN+MI GYA  G  + A +LF
Sbjct: 93  NFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLF 152

Query: 198 NEM 200
           +EM
Sbjct: 153 DEM 155


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/435 (44%), Positives = 276/435 (63%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAKQG++  A ++F  M +KDVV W  ++ GY+ +G   EA+ LF +M    V P
Sbjct: 81  ALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYP 140

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +++   +VLSAC ++  ++ G+ IH+ +  S  ++ ++ V  +L+ MY+KCGS+ DA   
Sbjct: 141 DQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESSLSVDNSLVTMYAKCGSIVDANRA 199

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD +  +DV+ W ++IVGYA +G GK +LQ +++M     KP  ITFIGLL AC+H GL+
Sbjct: 200 FDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLL 259

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             GR +F  M   Y I+P  EHY CM++LL R+G++ EA  L+  M + PD+V+W  LL 
Sbjct: 260 GSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLA 319

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+H  + LGE  A+ L      NS  YV+LSN+Y+A G W+  AR+R LM+ +G+ KE
Sbjct: 320 ACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKE 379

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IE ++KV  F++ D  HP   EIY  ++EI   +K  GYVP     LHD  ++ K
Sbjct: 380 PGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVK 439

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSEKLAVAFGL++   G  I+I KNLRVC DCH   K  SK   R I++RD N 
Sbjct: 440 ELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNC 499

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G CSCGDYW
Sbjct: 500 FHHFTEGRCSCGDYW 514



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 117/221 (52%), Gaps = 9/221 (4%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           ME  D V WN +I G  + G   +AL  F++M +  ++ +E T  +VL++   +  +++ 
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             +H  I  +   +    V  ALI+MY+K G L  A +VF ++ DKDVV W S++ GY+ 
Sbjct: 61  ISVHCLIIKT-GFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSH 119

Query: 187 HGFGKDALQLFNEMCRIRLK---PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
           +G  ++A++LF   C++R+    P  I    +LSACA   +++ G++   T+     +E 
Sbjct: 120 NGSYEEAIKLF---CKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLES 175

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +     +V + ++ G + +A +   +M    D + W  L+
Sbjct: 176 SLSVDNSLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALI 215



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 40/222 (18%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMP---------------------------- 37
           +DKD+   TSLV  Y+  G    A KLF  M                             
Sbjct: 103 VDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQ 162

Query: 38  -----------QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
                      + SL    +++T YAK G +  A   FD+M  +DV+ W  +I GYAQ+G
Sbjct: 163 QIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNG 222

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
               +L  + +M+A   +P+ +T + +L AC   G L SGR     ++    IK   +  
Sbjct: 223 RGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHY 282

Query: 147 TALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             +I++  + G L +A+ L+   V   D VVW +++    +H
Sbjct: 283 ACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVH 324


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/481 (43%), Positives = 300/481 (62%), Gaps = 32/481 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAA 59
            +KF    D YVS +L+ +Y+  GG+ L                                
Sbjct: 170 ALKFGFTTDQYVSNTLIHMYSCFGGEFL------------------------------GD 199

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD M +   V W+ MI GY + GL+++A+ LFR M A  V P+EVT + VL+A   
Sbjct: 200 ARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAAD 259

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GALE  RW+  ++E    I  +V +  ALI+  +KCG L  A  VF  + ++ +V W S
Sbjct: 260 LGALELARWVGRFVEKE-GIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTS 318

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I   AM G GK+A+ +F EM    ++P D+ FIG+L+AC+HAG+V+EG  +F +M+  Y
Sbjct: 319 VIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAY 378

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+PK+EHYGCMV++  RAG VE A + V  M ++P+ ++W TL+ ACR HG + LGE I
Sbjct: 379 GIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETI 438

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              L+++  A+   YV+LSN+YA    W   + +R  M ++G++K PGCS +EL  +VHE
Sbjct: 439 TRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHE 498

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGD  HP+ KEIYMM+EE+   L+  G++  T  VL D+ E+ K+ +L+ HSEKLA+A
Sbjct: 499 FIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLAIA 558

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           F L+ T PGT +++VKNLRVC DCHA  K IS    R+I++RDR+RFH F NG+CSC D+
Sbjct: 559 FVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDF 618

Query: 480 W 480
           W
Sbjct: 619 W 619


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/439 (44%), Positives = 282/439 (64%), Gaps = 1/439 (0%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V  + +L  Y K G +  AR +FD M+++DVV W  MI    + G   E  +LFR ++  
Sbjct: 256 VVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQS 315

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V PNE T   VL+AC    A   G+ +H Y+ ++     +  + +AL++MYSKCG+ + 
Sbjct: 316 GVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAI-SALVHMYSKCGNTRV 374

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           AR VF+ ++  D+V W S+IVGYA +G   +AL  F  + +   KP  +T++G+LSAC H
Sbjct: 375 ARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTH 434

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV++G  +F+++K+++ +    +HY C+++LL+R+G+ +EA  ++ +M ++PD  LW 
Sbjct: 435 AGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWA 494

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG CR+HGN+ L ++ A+ L      N  TY+ L+NIYA  G W  VA VR  M   G
Sbjct: 495 SLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMG 554

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           + K+PG S IE+  +VH FL GD  HPK+ +I+  L E++  +K EGYVP T  VLHD+ 
Sbjct: 555 IVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVE 614

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E+QK+ +L  HSEKLAV FG+IST PGT IK+ KNLR C DCH   K ISK   RKI +R
Sbjct: 615 EEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVR 674

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFH F +G+CSC DYW
Sbjct: 675 DSNRFHCFEDGSCSCKDYW 693



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 152/276 (55%), Gaps = 4/276 (1%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +++S  L+D+YA+ G ++ A+ LF  M  R L S  TM+  YAK G +  AR LFD+M +
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRW 128
           +D   WN  I GY  H    EAL LFR M   E+   N+ T  + L+A   I  L  G+ 
Sbjct: 182 RDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE 241

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH Y+  +  + ++  V +AL+++Y KCGSL +AR +FD++ D+DVV W +MI      G
Sbjct: 242 IHGYLIRT-ELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDG 300

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             ++   LF ++ +  ++P++ TF G+L+ACA     + G+     M      +P     
Sbjct: 301 RREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMM-HAGYDPGSFAI 359

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             +V++ S+ G    A ++  +M  +PD V W +L+
Sbjct: 360 SALVHMYSKCGNTRVARRVFNEMH-QPDLVSWTSLI 394



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           +D   Q     EA+ L  R       P+      +++AC +  ALE GR +H++ + S N
Sbjct: 62  VDVLCQQKRVKEAVELLHRT---DHRPSARVYSTLIAACVRHRALELGRRVHAHTKAS-N 117

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
               V +   L++MY+KCGSL DA+++FD +  +D+  WN+MIVGYA  G  + A +LF+
Sbjct: 118 FVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFD 177

Query: 199 EM 200
           EM
Sbjct: 178 EM 179


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/434 (44%), Positives = 284/434 (65%), Gaps = 2/434 (0%)

Query: 47   MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
            ++  YAK G +  A ++F  +  KD+V WN MI GY+++ L NEAL LF  M  E   P+
Sbjct: 796  LMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPD 854

Query: 107  EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             +T   +L ACG + ALE GR IH  I  +      + V  ALI+MY KCGSL  ARL+F
Sbjct: 855  GITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHARLLF 913

Query: 167  DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            D + +KD++ W  MI G  MHG G +A+  F +M    +KP +ITF  +L AC+H+GL+N
Sbjct: 914  DMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLN 973

Query: 227  EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            EG  FFN+M  E  +EPK+EHY CMV+LL+R G + +AY L+  M I+PD+ +WG LL  
Sbjct: 974  EGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCG 1033

Query: 287  CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            CR+H ++ L EK+AE++      N+G YVLL+NIYA    W+ V ++R  + ++G++K P
Sbjct: 1034 CRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSP 1093

Query: 347  GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
            GCS IE+  K   F++ D  HP++K I+ +L  +   +K EG+ P+ +  L + G+ +K+
Sbjct: 1094 GCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKE 1153

Query: 407  NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             +L  HSEKLA+AFG+++   G +I++ KNLRVC DCH + K +SK T R+I++RD NRF
Sbjct: 1154 VALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRF 1213

Query: 467  HHFVNGTCSCGDYW 480
            HHF +G CSC D+W
Sbjct: 1214 HHFKDGFCSCRDFW 1227



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 151/293 (51%), Gaps = 17/293 (5%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTT----MLTCYAKQGEVA 58
           K  +  + Y  + ++  +A  G V   +++   + +    S  T    ++  Y K GEV 
Sbjct: 546 KLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVD 605

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           +A  LFD++ ++DVV WN MI G   +G ++ AL  F +ML  +V  +  T V  ++AC 
Sbjct: 606 SAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACA 665

Query: 119 QIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            +G+L  GR +H      + +K      V     L++MYSKCG+L DA   F+++  K V
Sbjct: 666 NVGSLSLGRALH-----GQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W S+I  Y   G   DA++LF EM    + P   +   +L ACA    +++GR   N 
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNY 780

Query: 235 M-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           + K+  A+   V +   ++++ ++ G +EEAY +   + ++ D V W T++G 
Sbjct: 781 IRKNNMALCLPVSN--ALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 131/297 (44%), Gaps = 43/297 (14%)

Query: 51  YAKQGEVAAARVLFDD-MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
           Y   G +   R +FD  + +  V  WN+M+  YA+ G   E++ LF++M    +  N  T
Sbjct: 496 YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555

Query: 110 AVAVLSACGQIGALESGRWIHSYIEN----SRNIKVNVQVGTALINMYSKCGSLKDARLV 165
              +L     +G +   + IH  +      S N  VN     +LI  Y K G +  A  +
Sbjct: 556 FSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVN-----SLIATYFKSGEVDSAHKL 610

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD + D+DVV WNSMI G  M+GF   AL+ F +M  +R+     T +  ++ACA+ G +
Sbjct: 611 FDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSL 670

Query: 226 NEGRR---------------FFNTMKDEYAI---------------EPKVEHYGCMVNLL 255
           + GR                F NT+ D Y+                +  V  +  ++   
Sbjct: 671 SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAY 730

Query: 256 SRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            R G  ++A +L  +M+   + PD     ++L AC    ++  G  +  Y+   N+A
Sbjct: 731 VREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMA 787



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 113/221 (51%), Gaps = 14/221 (6%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N  I  + + G    A+ L R  +++K E +     ++L  C +   L+ G+ +HS I +
Sbjct: 422 NTKICKFCEVGDLRNAVELLR--MSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVI-S 478

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDAL 194
           S  I +   +G  L+ MY  CG+L++ R +FD + +D  V +WN M+  YA  G  ++++
Sbjct: 479 SNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI 538

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            LF +M ++ +  +  TF  +L   A  G V E +R    +   Y +      Y  +VN 
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCV---YKL--GFGSYNTVVNS 593

Query: 255 L----SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           L     ++G+V+ A+KL  ++  + D V W +++  C ++G
Sbjct: 594 LIATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISGCVMNG 633


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/492 (41%), Positives = 308/492 (62%), Gaps = 46/492 (9%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  LD+D +V  +L+D+Y+R                                G++  A+
Sbjct: 428 VKRGLDRDRFVQNALMDMYSR-------------------------------LGKIDIAK 456

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK---------VEPNEVTA 110
            +F  ME++D+V WN +I GY       +AL++  +M  L  K         ++PN +T 
Sbjct: 457 RIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITL 516

Query: 111 VAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
           + +L +C  + AL  G+ IH+Y I+N  N+  +V VG+AL++MY+KCG L+ +R VFD++
Sbjct: 517 MTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 574

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
             ++V+ WN +++ Y MHG  +DA+ +   M    +KP+++TFI + +AC+H+G+VNEG 
Sbjct: 575 PIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACR 288
           + F  MK +Y +EP  +HY C+V+LL RAG+V+EAY+L+  +    D    W +LLGACR
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACR 694

Query: 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGC 348
           +H N+ +GE  A+ LI      +  YVLL+NIY++ G W     VR  MK +GV+KEPGC
Sbjct: 695 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGC 754

Query: 349 SSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNS 408
           S IE  ++VH+F+AGD  HP+S+++   LE +   ++ EGY+P T  VLH++ E +K+  
Sbjct: 755 SWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEIL 814

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           L  HSEKLA+AFG+++T PGT I++ KNLRVC DCH   K ISK   R+I++RD  RFHH
Sbjct: 815 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHH 874

Query: 469 FVNGTCSCGDYW 480
           F NGTCSCGDYW
Sbjct: 875 FKNGTCSCGDYW 886



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 132/242 (54%), Gaps = 3/242 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + T++  Y K G++A+++VL    E +D+V WN ++    Q+    EAL   R M+ E V
Sbjct: 235 INTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGV 294

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+  T  +VL AC  +  L +G+ +H+Y   + ++  N  VG+AL++MY  C  +    
Sbjct: 295 EPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGC 354

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHA 222
            VFD + D+ + +WN+MI GYA + + ++AL LF EM     L  +  T  G++ AC  +
Sbjct: 355 RVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRS 414

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G  ++ +   +    +  ++        ++++ SR G+++ A ++   M+ + D V W T
Sbjct: 415 GAFSK-KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME-DRDLVTWNT 472

Query: 283 LL 284
           ++
Sbjct: 473 II 474



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 48/301 (15%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           SLD++ +V ++LVD+Y     VLS  ++F                               
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVF------------------------------- 357

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGAL 123
           D M ++ +  WN MI GYAQ+    EAL+LF  M  +  +  N  T   V+ AC + GA 
Sbjct: 358 DGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAF 417

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
                IH ++   R +  +  V  AL++MYS+ G +  A+ +F ++ D+D+V WN++I G
Sbjct: 418 SKKEAIHGFVVK-RGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITG 476

Query: 184 YAMHGFGKDALQLFNEM-----------CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           Y      +DAL + ++M            R+ LKP+ IT + +L +CA    + +G+   
Sbjct: 477 YVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 233 N-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +K+  A +  V     +V++ ++ G ++ + K+   + I  + + W  ++ A  +HG
Sbjct: 537 AYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHG 593

Query: 292 N 292
           N
Sbjct: 594 N 594



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 5/195 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S+    T++  Y K G+  A   +FD + E++ V WN +I           AL  FR ML
Sbjct: 128 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 187

Query: 100 AEKVEPNEVTAVAVLSACGQIGALES---GRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            E VEP+  T V+V  AC      E    G+ +H+Y    R  ++N  +   L+ MY K 
Sbjct: 188 DEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAY--GLRKGELNSFIINTLVAMYGKM 245

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  ++++      +D+V WN+++     +    +AL+   EM    ++P   T   +L
Sbjct: 246 GKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVL 305

Query: 217 SACAHAGLVNEGRRF 231
            AC+H  ++  G+  
Sbjct: 306 PACSHLEMLRTGKEL 320



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           W  ++    +  L  EA++ +  M+   ++P+     A+L A   +  ++ G+ IH+++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                  +V V   L+N+Y KCG       VFDR+++++ V WNS+I         + AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAH 221
           + F  M    ++PS  T + +  AC++
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSN 207


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 289/437 (66%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y K G++  AR +FD + E+ +V WN MI GY Q+G A EA+ LF RM    VE
Sbjct: 150 AALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVE 209

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T V+VLSAC  +GA   G W+H YI  +  + +NV +GT+LINMY +CG++  AR 
Sbjct: 210 PDSATFVSVLSACAHLGAFSLGCWVHEYIVGN-GLDLNVVLGTSLINMYIRCGNVSKARE 268

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + +++VV W +MI GY  +G+G  A++LF+EM R  L P+ ITF+ +LSACAHAGL
Sbjct: 269 VFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGL 328

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE-PDSVLWGTL 283
           VNEGRR F ++++EY + P VEH  C+V++L RAG ++EAY  + +   E P   +   +
Sbjct: 329 VNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAM 388

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N  LG ++AE+L++    N   YV+LSNIYA  G  D V  VR  M  K ++
Sbjct: 389 LGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLK 448

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+ G S++E+  K + F  GD  H ++  IY  L+E+       GYVP +  V+H++ E+
Sbjct: 449 KQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHELEEE 508

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +++ +L  HSEKLA+AFGL+ T  GT I+IVKNLR+C DCH+  K IS  + R+I++RD+
Sbjct: 509 EREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREIIVRDK 568

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF  G+CSC DYW
Sbjct: 569 LRFHHFKVGSCSCLDYW 585



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 12/251 (4%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRR 97
           RS   LT +L      G ++  R +F  +   D   +  +I   ++ H  +  +L  + R
Sbjct: 42  RSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSR 101

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   V P+  T  +V+ +C  + AL+ GR +H ++       ++V V  AL+ +Y KCG
Sbjct: 102 MVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVL-VHGFGLDVYVQAALVALYGKCG 160

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            L +AR VFD++ ++ +V WNSMI GY  +GF K+A+ LF+ M    ++P   TF+ +LS
Sbjct: 161 DLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLS 220

Query: 218 ACAHAGLVNEGRRFFNTMKDEY----AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
           ACAH G  + G         EY     ++  V     ++N+  R G V +A ++   MK 
Sbjct: 221 ACAHLGAFSLG-----CWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMK- 274

Query: 274 EPDSVLWGTLL 284
           E + V W  ++
Sbjct: 275 ERNVVAWTAMI 285



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 31/157 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD ++ + TSL+++Y R G+V  A ++F +M +R++V+ T M++                
Sbjct: 243 LDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMIS---------------- 286

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                          GY  +G  ++A+ LF  M    + PN +T VAVLSAC   G +  
Sbjct: 287 ---------------GYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNE 331

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           GR + + I    ++   V+    L++M  + G L +A
Sbjct: 332 GRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEA 368


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 285/440 (64%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +  ++L+ YAK G +  A  LFD+M  KD V ++ ++ GY Q+G A EA ++F++M A
Sbjct: 260 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 319

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP+  T V+++ AC  + AL+ GR  H  +   R +     +  ALI+MY+KCG + 
Sbjct: 320 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKCGRID 378

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R VF+ +  +D+V WN+MI GY +HG GK+A  LF EM  +   P  +TFI LLSAC+
Sbjct: 379 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F+ M   Y + P++EHY CMV+LLSR G ++EAY+ +  M +  D  +W
Sbjct: 439 HSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 498

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGACR++ NI LG+K++  +       +G +VLLSNIY+A G +D  A VR + K +
Sbjct: 499 VALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQ 558

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCS IE++  +H F+ GD  HP+S EIY  L+ I   +K  GY P T  VL D+
Sbjct: 559 GFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 618

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLA+A+G++S     +I + KNLRVC DCH V K IS    R I++
Sbjct: 619 EEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIV 678

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF NG CSCGD+W
Sbjct: 679 RDANRFHHFKNGQCSCGDFW 698



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 174/398 (43%), Gaps = 97/398 (24%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +   L  DL+VST+L+D+Y +   +  A  +FATMP                       
Sbjct: 36  AIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP----------------------- 72

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL--VLFRRMLAEKVEPNEVTAVAVLSACG 118
                    +D+V WN M+ GYA HG+ + A+  +L  +M   ++ PN  T VA+L    
Sbjct: 73  --------ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 124

Query: 119 QIGALESGRWIHSY-----IENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRV 169
           Q GAL  G  +H+Y     +  +RN K      V +GTAL++MY+KCGSL  AR VFD +
Sbjct: 125 QQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFI------------- 213
             ++ V W+++I G+ +      A  LF  M       L P+ I                
Sbjct: 185 PARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG 244

Query: 214 --------------------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
                                LLS  A AGL+++    F    DE A++  V  Y  +V+
Sbjct: 245 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF----DEMAVKDTVS-YSALVS 299

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYLIS 305
              + G+ EEA+ +   M+   +EPD+    +L+ AC       HG  + G  I   L S
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 306 Q-NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           + ++ N+     L ++YA  G  D   +V  +M  + +
Sbjct: 360 ETSICNA-----LIDMYAKCGRIDLSRQVFNMMPSRDI 392



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 135/264 (51%), Gaps = 7/264 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  AR +FD M  ++ V W+ +I G+       +A +LF+ MLA+ + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 105 PNEVTAVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
               T++A  L AC  +  L  G  +H+ +  S  +  ++  G +L++MY+K G +  A 
Sbjct: 222 FLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD +  KD V +++++ GY  +G  ++A  +F +M    ++P   T + L+ AC+H  
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 340

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  GR    ++     +  +      ++++ ++ G+++ + + V +M    D V W T+
Sbjct: 341 ALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLS-RQVFNMMPSRDIVSWNTM 398

Query: 284 LGACRLHGNIALGEKIAEYLISQN 307
           +    +HG   LG++     +  N
Sbjct: 399 IAGYGIHG---LGKEATALFLEMN 419



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML  +V PN  T    L AC  +     GR IH +  ++  ++ ++ V TAL++MY KC 
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHA-GLQADLFVSTALLDMYVKCA 59

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ--LFNEMCRIRLKPSDITFIGL 215
            L DA  +F  +  +D+V WN+M+ GYA HG    A+   L  +M   RL+P+  T + L
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 216 LSACAHAGLVNEG 228
           L   A  G + +G
Sbjct: 120 LPLLAQQGALAQG 132



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 34/178 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  +  +  +L+D+YA+ G +  + ++F  MP R +VS  TM                  
Sbjct: 357 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM------------------ 398

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG-ALE 124
                        I GY  HGL  EA  LF  M      P+ VT + +LSAC   G  +E
Sbjct: 399 -------------IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
              W H  + +   +   ++    ++++ S+ G L +A      +  + DV VW +++
Sbjct: 446 GKHWFH-VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/435 (44%), Positives = 287/435 (65%), Gaps = 2/435 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y +   V  AR +F+ +  KD+V W  MI     +GLA EAL LF  ++   +EP+
Sbjct: 493 IVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPD 552

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V+VL A   + +L+ G+ IH ++   +   +   +  +L++MY++CG++++AR +F
Sbjct: 553 LITLVSVLYAAAALSSLKKGKEIHGFLIR-KGFFLEGLIANSLVDMYARCGTMENARNIF 611

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           + V  +D+++W SMI    MHG GKDA+ LF++M    + P  ITF+ LL AC+H+GLV 
Sbjct: 612 NYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVV 671

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG++ F  MK+EY +EP  EHY C+V+LL+R+  +EEAY  V +M IEP + +W  LLGA
Sbjct: 672 EGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGA 731

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H N  LGE  A+ L+  N  NSG YVL+SN +AA G W+ V  VR++MK   ++K+P
Sbjct: 732 CRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKP 791

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQK 405
           GCS IE+ NK+H F+A D  HP+   IY+ L +    LK + GY  QT++V HD+ E++K
Sbjct: 792 GCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEK 851

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
              L  HSE+LA+ +GL+ T  GT ++I KNLR+C DCHA FK+ S+ + R +++RD +R
Sbjct: 852 TQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASR 911

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G CSCGD+W
Sbjct: 912 FHHFERGLCSCGDFW 926



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 3/174 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++  YAK G++  ARVLFD   ME+ D V WN +I  +   G + EAL LFRRM    VE
Sbjct: 189 LIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVE 248

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T V+ L AC     ++ GR IH+ I  S +   +V V  ALI MY+ CG ++DA  
Sbjct: 249 SNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHF-TDVYVSNALIAMYANCGQMEDAER 307

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           VF  +  KD V WN+++ G   +    DA+  F +M     KP  ++ + +++A
Sbjct: 308 VFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 141/291 (48%), Gaps = 37/291 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  +D ++++  SL+D+Y +                           C    G      
Sbjct: 379 IKHGIDSNMHIGNSLIDMYGK-------------------------CCCVKYMGSA---- 409

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             F+ M EKD++ W  +I GYAQ+    +AL L R++  EK++ + +   ++L AC  + 
Sbjct: 410 --FEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLK 467

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           + +  + IH Y+       + +Q   A++N+Y +   +  AR VF+ +N KD+V W SMI
Sbjct: 468 SEKLIKEIHGYVLKGGLADILIQ--NAIVNVYGELALVDYARHVFESINSKDIVSWTSMI 525

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYA 240
                +G   +AL+LFN +    ++P  IT + +L A A    + +G+     + +  + 
Sbjct: 526 TCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFF 585

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +E  + +   +V++ +R G +E A  +   +K + D +LW +++ A  +HG
Sbjct: 586 LEGLIAN--SLVDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMHG 633



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 19/289 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T  +  Y K G    A  +FD M E+ +  WN MI      G   EA+ L++ M    V 
Sbjct: 86  TKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVS 145

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T   VL ACG       G  IH  +         V V  ALI MY+KCG L  AR+
Sbjct: 146 LDAFTFPCVLKACGAFKERRLGCEIHG-VAVKCGYGGFVFVCNALIAMYAKCGDLGGARV 204

Query: 165 VFDR--VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           +FD   +   D V WNS+I  +   G   +AL LF  M  + ++ +  TF+  L AC   
Sbjct: 205 LFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC--- 261

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHY------GCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
               EG  F    +  +A+  K  H+        ++ + +  GQ+E+A ++   M  + D
Sbjct: 262 ----EGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-D 316

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
            V W TLL    +  N    + I  +   Q+       V + N+ AA G
Sbjct: 317 CVSWNTLLSG--MVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P +      L  C    AL  G+ +H++   ++N   +V + T  ++MY KCGS  DA  
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           VFD+++++ +  WN+MI      G   +A++L+ EM  + +     TF  +L AC 
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACG 159



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 76/143 (53%), Gaps = 1/143 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YA+ G +  AR +F+ ++++D++ W  MI+    HG   +A+ LF +M  E V P
Sbjct: 593 SLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLP 652

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RL 164
           + +T +A+L AC   G +  G+     ++N   ++   +    L+++ ++  SL++A   
Sbjct: 653 DHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHF 712

Query: 165 VFDRVNDKDVVVWNSMIVGYAMH 187
           V +   +    VW +++    +H
Sbjct: 713 VRNMPIEPSAEVWCALLGACRIH 735


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 283/445 (63%), Gaps = 10/445 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ---------HGLANEALVLF 95
             +L  +A+ G +A+ R +FD +   D+  WN ++  YA+            A+  L +F
Sbjct: 181 AALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMF 240

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            RML+  ++PNE+T VAV+ ACG++GA+  G W H+Y    R + VN  V TAL+ MY+ 
Sbjct: 241 VRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVK-RRLAVNCIVATALVEMYAG 299

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L  A  VF   +D+D   +N+M+ G A+HG G+ AL LF+ M    +    +T + +
Sbjct: 300 CGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSV 359

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + ACAHAGLV+EG  +F+ M+ E+ IEP +EHYGCMV++LSRAG++ +A KL+  M I P
Sbjct: 360 MCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVP 419

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           ++ ++ +L+ AC +HG + LG+K+   L+     +SG +VL+SN YA    WD   + R 
Sbjct: 420 NAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARK 479

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            MK  G+ K PG S ++++  +HEFL GD  HP SKEIY M+E+I   L   G+   T  
Sbjct: 480 EMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSS 539

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            L D+ E+ K ++L  HSE+LA+AF LI++ PG  I+I+KNLRVC DCH   KL+S+  G
Sbjct: 540 ALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYG 599

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I+MRDR RFHHF +G CSCGD+W
Sbjct: 600 REIVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 9/93 (9%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY--------AMHGFGKDA-LQ 195
           +G AL++++++CG +   R VFDR+ + D+  WN+++  Y        A      DA L+
Sbjct: 179 LGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILE 238

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           +F  M  + +KP++IT + ++ AC   G V+ G
Sbjct: 239 MFVRMLSLAIKPNEITLVAVIGACGELGAVSHG 271



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 34/210 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  L  +  V+T+LV++YA  G +  AE++FA    R       ML   A  G     
Sbjct: 278 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHG----- 332

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG A  AL LF RM  E V  + VT ++V+ AC   
Sbjct: 333 ------------------------HGRA--ALSLFDRMHGEGVPVDGVTVLSVMCACAHA 366

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +E    I+ +++    +++M S+ G L DA +L+       +  ++ S
Sbjct: 367 GLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRS 426

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +I    +HG  +   ++  E+  +RL+P D
Sbjct: 427 LIRACGIHGKLELGKKMIAEL--MRLEPDD 454


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 284/437 (64%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + ++L  Y K   +  A  +F++   +D+V +  MI  Y+Q+G   EAL L+ +M    +
Sbjct: 423 INSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADI 482

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+     ++L+AC  + A E G+ +H +         ++    +L+NMY+KCGS++DA 
Sbjct: 483 KPDPFICSSLLNACANLSAYEQGKQLHVH-AIKFGFMCDIFASNSLVNMYAKCGSIEDAD 541

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             F  + ++ +V W++MI GYA HG GK+AL+LFN+M R  + P+ IT + +L AC HAG
Sbjct: 542 RAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAG 601

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LVNEG+++F  M+  + I+P  EHY CM++LL R+G++ EA +LV  +  E D  +WG L
Sbjct: 602 LVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGAL 661

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGA R+H NI LG+K A+ L       SGT+VLL+NIYA+ G W+ VA+VR  MK+  V+
Sbjct: 662 LGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVK 721

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPG S IE+ +KV+ F+ GD  H +S EIY  L+++   L   GY    +I +H++ + 
Sbjct: 722 KEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKS 781

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  L  HSEKLAVAFGLI+T PG  I++ KNLR+C DCH  FK + K   R+I++RD 
Sbjct: 782 EKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDI 841

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G+CSCGDYW
Sbjct: 842 NRFHHFKDGSCSCGDYW 858



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 3/244 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T Y+K      AR L D+  E DVV W+ ++ GY Q+G   EAL++F  M    V+ N
Sbjct: 22  LVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCN 81

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T  +VL AC     L  GR +H  +      + +  V   L+ MY+KCG L D+R +F
Sbjct: 82  EFTFPSVLKACSMKRDLNMGRKVHG-MAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + +++VV WN++   Y       +A+ LF EM R  + P++ +   +L+ACA     +
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGD 200

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            GR+    M  +  ++        +V++ S+AG++E A  +  D+   PD V W  ++  
Sbjct: 201 LGRKIHGLML-KMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAG 258

Query: 287 CRLH 290
           C LH
Sbjct: 259 CVLH 262



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 174/431 (40%), Gaps = 74/431 (17%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S   ++  Y+K GE+  A  +F D+   DVV WN +I G   H   + AL+L   M    
Sbjct: 220 SANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSG 279

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGS 158
             PN  T  + L AC  +G  E GR +HS +     IK++          L++MYSKC  
Sbjct: 280 TRPNMFTLSSALKACAAMGFKELGRQLHSSL-----IKMDAHSDLFAAVGLVDMYSKCEM 334

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           + DAR  +D +  KD++ WN++I GY+  G   DA+ LF++M    +  +  T   +L +
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 219 CAHAGLVNEGRRFFN------TMKDEYAIEPKVEHYG----------------------- 249
            A    +   ++            D Y I   ++ YG                       
Sbjct: 395 VASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 250 -CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             M+   S+ G  EEA KL + M+   I+PD  +  +LL AC        G+++  + I 
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 306 QNL------ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
                    +NS     L N+YA  G+ +   R  + +  +G+                 
Sbjct: 515 FGFMCDIFASNS-----LVNMYAKCGSIEDADRAFSEIPNRGIVSWSA------------ 557

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI----GEKQKQNSLEVHSEK 415
            + G  +H   KE   +  ++         VP   I L  +          N  + + EK
Sbjct: 558 MIGGYAQHGHGKEALRLFNQM-----LRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEK 612

Query: 416 LAVAFGLISTQ 426
           + V FG+  TQ
Sbjct: 613 MEVMFGIKPTQ 623



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 134/260 (51%), Gaps = 19/260 (7%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +   ++  Y+K   +  AR  +D M +KD++ WN +I GY+Q G   +A+ LF +M +
Sbjct: 319 LFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFS 378

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E ++ N+ T   VL +   + A++  + IH+ I     I  +  V  +L++ Y KC  + 
Sbjct: 379 EDIDFNQTTLSTVLKSVASLQAIKVCKQIHT-ISIKSGIYSDFYVINSLLDTYGKCNHID 437

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A  +F+    +D+V + SMI  Y+ +G G++AL+L+ +M    +KP       LL+ACA
Sbjct: 438 EASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 221 HAGLVNEGRRF------FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +     +G++       F  M D +A          +VN+ ++ G +E+A +   ++   
Sbjct: 498 NLSAYEQGKQLHVHAIKFGFMCDIFASNS-------LVNMYAKCGSIEDADRAFSEI--- 547

Query: 275 PDS--VLWGTLLGACRLHGN 292
           P+   V W  ++G    HG+
Sbjct: 548 PNRGIVSWSAMIGGYAQHGH 567



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 3/240 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T++  YAK G +  +R LF  + E++VV WN +   Y Q  L  EA+ LF+ M+   + 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE +   +L+AC  +   + GR IH  +     + ++     AL++MYSK G ++ A  
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLK-MGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +   DVV WN++I G  +H     AL L +EM     +P+  T    L ACA  G 
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              GR+  +++    A        G +V++ S+   +++A +   D   + D + W  L+
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVG-LVDMYSKCEMMDDARR-AYDSMPKKDIIAWNALI 357



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +KF    D++ S SLV++YA+ G +  A++ F+ +P R +VS + M+  Y         
Sbjct: 512 AIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGY--------- 562

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                 AQHG   EAL LF +ML + V PN +T V+VL AC   
Sbjct: 563 ----------------------AQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHA 600

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G +  G+     +E    IK   +    +I++  + G L +A  LV     + D  VW +
Sbjct: 601 GLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGA 660

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 661 LLGAARIH 668



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ +YSKC     AR + D  ++ DVV W+S++ GY  +GF ++AL +FNEMC + +K +
Sbjct: 22  LVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCN 81

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQVEEA 264
           + TF  +L AC+    +N GR+         A+    E  G + N L    ++ G ++++
Sbjct: 82  EFTFPSVLKACSMKRDLNMGRKVHGM-----AVVTGFESDGFVANTLVVMYAKCGLLDDS 136

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA---EYLISQNLANSGTYVLLSNIY 321
            +L   + +E + V W  L  +C +   +  GE +    E + S  + N  +  ++ N  
Sbjct: 137 RRLFGGI-VERNVVSWNALF-SCYVQSELC-GEAVGLFKEMVRSGIMPNEFSISIILNAC 193

Query: 322 AAIGNWDGVARVRTLMKEKGV 342
           A +   D   ++  LM + G+
Sbjct: 194 AGLQEGDLGRKIHGLMLKMGL 214


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/476 (42%), Positives = 304/476 (63%), Gaps = 9/476 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAARVL 63
           DL    SL  ++++  D   +  +   + +R      +V    ++  YAK G +  A  +
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGA 122
           FD +  KD + WN ++ GY Q+GLA+EA+  +  M       PN+ T V+++ A   +GA
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 123 LESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L+ G  IH+  I+NS  + ++V V T LI++Y KCG L+DA  +F  +     V WN++I
Sbjct: 442 LQQGMKIHAKLIKNS--LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
               +HG G++ALQLF +M   R+K   ITF+ LLSAC+H+GLV+EG++ F+ M+ EY I
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P ++HYGCMV+LL RAG +E+AY+LV +M I+PD+ +WG LL AC+++GN  LG   ++
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+  +  N G YVLLSNIYA    W+GV +VR+L +++G++K PG SS+ + +K   F 
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            G+  HPK  EIY  L+ ++  +K+ GYVP    V  DI E +K+  L  HSE+LA+AFG
Sbjct: 680 TGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFG 739

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +IST P + I+I KNLRVC DCH   K IS+ + R+I++RD NRFHHF +G CSC 
Sbjct: 740 IISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 135/248 (54%), Gaps = 7/248 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G +  A+++FD ME +D+V WN +I  Y Q+   + AL  F+ M    + P+
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V++ S   Q+      R I  ++     +  +V +G AL+NMY+K G +  A  VF
Sbjct: 323 LLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF 382

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGL 224
           D++  KD + WN+++ GY  +G   +A+  +N M  CR  + P+  T++ ++ A +H G 
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGA 441

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G +     +K+   ++  V    C+++L  + G++E+A  L  ++  +  SV W  +
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVA--TCLIDLYGKCGRLEDAMSLFYEIPRD-TSVPWNAI 498

Query: 284 LGACRLHG 291
           + +  +HG
Sbjct: 499 IASLGIHG 506



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 149/327 (45%), Gaps = 39/327 (11%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K   + D++V+ SLV LY+R G +  A K+F                             
Sbjct: 149 KMGFEDDVFVAASLVHLYSRYGVLDVAHKVFV---------------------------- 180

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
              DM  KDV  WN MI G+ Q+G A  AL +  RM  E V+ + +T  ++L  C Q   
Sbjct: 181 ---DMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDD 237

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           + +G  IH ++     +  +V V  ALINMYSK G L+DA++VFD++  +D+V WNS+I 
Sbjct: 238 VINGVLIHLHVLK-HGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIA 296

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  +     AL+ F  M    ++P  +T + L S  +        R     +     ++
Sbjct: 297 AYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLD 356

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             V     +VN+ ++ G +  A+  V D     D++ W TL+     +G     E I  Y
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHT-VFDQLPRKDTISWNTLVTGYTQNG--LASEAIDAY 413

Query: 303 LISQ----NLANSGTYVLLSNIYAAIG 325
            + +     + N GT+V +   Y+ +G
Sbjct: 414 NMMEECRDTIPNQGTWVSIIPAYSHVG 440



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL----VL 94
           +++V  T ++  Y   G+++ +R  FD + +K++  WN +I  Y + G  +EA+     L
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F       + P+  T   +L AC    +L  G+ +H  +      + +V V  +L+++YS
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFK-MGFEDDVFVAASLVHLYS 167

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           + G L  A  VF  +  KDV  WN+MI G+  +G    AL + N M    +K   IT   
Sbjct: 168 RYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVAS 227

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +L  CA +  V  G    +    ++ ++  V     ++N+ S+ G++++A ++V D    
Sbjct: 228 ILPVCAQSDDVING-VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA-QMVFDQMEV 285

Query: 275 PDSVLWGTLLGA 286
            D V W +++ A
Sbjct: 286 RDLVSWNSIIAA 297


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/427 (47%), Positives = 291/427 (68%), Gaps = 5/427 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GEV  A  L + +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 245 VNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 304

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVN--VQVGTALINMYSKCGSLK 160
            PN+VT +++L AC  +GA++ GRWIH YI+   + + V     + T+LI+MY+KCG + 
Sbjct: 305 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364

Query: 161 DARLVFDR-VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            A  V D    ++ +  WN+MI G+AMHG    A  +F+ M +  ++P DITF+GLLSAC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H+G+++ GR  F +M+ +Y I PK+EHYGCM++LL  +G  +EA +++  M +EPD V+
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 484

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W +LL AC++HGN+ LGE  A+ LI     N G+YVLLSNIYA  G W+ V ++RTL+ +
Sbjct: 485 WCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLND 544

Query: 340 KGVQKE-PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           KG++K+ PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL 
Sbjct: 545 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 604

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           ++ E+ K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH   KLISK   R+I
Sbjct: 605 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREI 664

Query: 459 MMRDRNR 465
           + RDR R
Sbjct: 665 IARDRTR 671



 Score =  205 bits (521), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 190/359 (52%), Gaps = 44/359 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +YA+ G +  A+K+F     R +VS T ++T YA +G + +A+
Sbjct: 102 LKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQ 161

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN MI GYA+ G   +AL LF+ M+   V+P+E T   V+SAC Q G
Sbjct: 162 KMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSG 221

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I N      N+++  ALI++YSKCG ++ A  + + +++KDV+ WN++I
Sbjct: 222 SIELGRQVHSWI-NDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLI 280

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 281 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKG 340

Query: 230 -------RFFNTMKDEYA------IEPKVEH----------YGCMVNLLSRAGQVEEAYK 266
                      ++ D YA        P+V            +  M+   +  G+   A+ 
Sbjct: 341 VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFD 400

Query: 267 LVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
           +   M+   IEPD + +  LL AC   G + LG  I      +Y I+  L + G  + L
Sbjct: 401 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDL 459



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 128/255 (50%), Gaps = 34/255 (13%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ + E + + WN+M  G+A       AL L+  M++  + PN  T   +L +C +   
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------------- 168
            + G+ IH ++       +++ V T+LI+MY++ G L+DA+ VFDR              
Sbjct: 91  FKEGQQIHGHVLK-LGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALIT 149

Query: 169 -----------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
                            +  KDVV WN+MI GYA  G  K AL+LF EM +  +KP + T
Sbjct: 150 GYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDEST 209

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
              ++SACA +G +  GR+  + + D +     ++    +++L S+ G+VE A +L+  +
Sbjct: 210 MATVVSACAQSGSIELGRQVHSWIND-HGFGSNLKIVNALIDLYSKCGEVETACELLEGL 268

Query: 272 KIEPDSVLWGTLLGA 286
               D + W TL+G 
Sbjct: 269 S-NKDVISWNTLIGG 282



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 100/209 (47%), Gaps = 18/209 (8%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + + + ++WN M  G+A+      AL+L+  M  + L P+  TF  LL +CA +  
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             EG++   + +K  + ++  V  +  ++++ ++ G++E+A K V D     D V +  L
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYV--HTSLISMYAQNGRLEDAQK-VFDRSSHRDVVSYTAL 147

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +      G I   +K+ + +  +++ +    +   + YA  GN+     +   M +  V+
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMI---SGYAETGNYKKALELFKEMMKTNVK 204

Query: 344 KE--------PGCS---SIELSNKVHEFL 361
            +          C+   SIEL  +VH ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWI 233


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 285/440 (64%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +  ++L+ YAK G +  A  LFD+M  KD V ++ ++ GY Q+G A EA ++F++M A
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 434

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP+  T V+++ AC  + AL+ GR  H  +   R +     +  ALI+MY+KCG + 
Sbjct: 435 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKCGRID 493

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R VF+ +  +D+V WN+MI GY +HG GK+A  LF EM  +   P  +TFI LLSAC+
Sbjct: 494 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F+ M   Y + P++EHY CMV+LLSR G ++EAY+ +  M +  D  +W
Sbjct: 554 HSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 613

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGACR++ NI LG+K++  +       +G +VLLSNIY+A G +D  A VR + K +
Sbjct: 614 VALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQ 673

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCS IE++  +H F+ GD  HP+S EIY  L+ I   +K  GY P T  VL D+
Sbjct: 674 GFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 733

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLA+A+G++S     +I + KNLRVC DCH V K IS    R I++
Sbjct: 734 EEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIV 793

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF NG CSCGD+W
Sbjct: 794 RDANRFHHFKNGQCSCGDFW 813



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 174/398 (43%), Gaps = 97/398 (24%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +   L  DL+VST+L+D+Y +   +  A  +FATMP                       
Sbjct: 151 AIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP----------------------- 187

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL--VLFRRMLAEKVEPNEVTAVAVLSACG 118
                    +D+V WN M+ GYA HG+ + A+  +L  +M   ++ PN  T VA+L    
Sbjct: 188 --------ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 239

Query: 119 QIGALESGRWIHSY-----IENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRV 169
           Q GAL  G  +H+Y     +  +RN K      V +GTAL++MY+KCGSL  AR VFD +
Sbjct: 240 QQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 299

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFI------------- 213
             ++ V W+++I G+ +      A  LF  M       L P+ I                
Sbjct: 300 PARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMG 359

Query: 214 --------------------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
                                LLS  A AGL+++    F    DE A++  V  Y  +V+
Sbjct: 360 EQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF----DEMAVKDTVS-YSALVS 414

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYLIS 305
              + G+ EEA+ +   M+   +EPD+    +L+ AC       HG  + G  I   L S
Sbjct: 415 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 474

Query: 306 Q-NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           + ++ N+     L ++YA  G  D   +V  +M  + +
Sbjct: 475 ETSICNA-----LIDMYAKCGRIDLSRQVFNMMPSRDI 507



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 135/264 (51%), Gaps = 7/264 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  AR +FD M  ++ V W+ +I G+       +A +LF+ MLA+ + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 105 PNEVTAVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
               T++A  L AC  +  L  G  +H+ +  S  +  ++  G +L++MY+K G +  A 
Sbjct: 337 FLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD +  KD V +++++ GY  +G  ++A  +F +M    ++P   T + L+ AC+H  
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  GR    ++     +  +      ++++ ++ G+++ + + V +M    D V W T+
Sbjct: 456 ALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLS-RQVFNMMPSRDIVSWNTM 513

Query: 284 LGACRLHGNIALGEKIAEYLISQN 307
           +    +HG   LG++     +  N
Sbjct: 514 IAGYGIHG---LGKEATALFLEMN 534



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG--LANEALVLFRRMLAEKVEPNEVTAVA 112
           G ++ A  LFD +   DV  +N +I  Y+      A + L L+RRML  +V PN  T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
            L AC  +     GR IH +  ++  ++ ++ V TAL++MY KC  L DA  +F  +  +
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHA-GLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 173 DVVVWNSMIVGYAMHGFGKDALQ--LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           D+V WN+M+ GYA HG    A+   L  +M   RL+P+  T + LL   A  G + +G
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 34/178 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  +  +  +L+D+YA+ G +  + ++F  MP R +VS  TM                  
Sbjct: 472 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM------------------ 513

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG-ALE 124
                        I GY  HGL  EA  LF  M      P+ VT + +LSAC   G  +E
Sbjct: 514 -------------IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
              W H  + +   +   ++    ++++ S+ G L +A      +  + DV VW +++
Sbjct: 561 GKHWFH-VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/444 (44%), Positives = 288/444 (64%), Gaps = 9/444 (2%)

Query: 41   LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
            L  ++ +L  Y K GE+ +AR +F+++   D V W  MI G  ++G    AL  +  M  
Sbjct: 1144 LFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRL 1203

Query: 101  EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKC 156
             KV+P+E T   ++ AC  + ALE GR IH+       +K+N      V T+L++MY+KC
Sbjct: 1204 SKVQPDEYTFATLVKACSLLTALEQGRQIHA-----NTVKLNCAFDPFVMTSLVDMYAKC 1258

Query: 157  GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            G+++DAR +F R N   +  WN+MIVG A HG  ++ALQ F EM    + P  +TFIG+L
Sbjct: 1259 GNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVL 1318

Query: 217  SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            SAC+H+GLV+E    F +M+  Y IEP++EHY C+V+ LSRAG++ EA K++  M  E  
Sbjct: 1319 SACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEAS 1378

Query: 277  SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
            + ++ TLL ACR+  +   G+++AE L++   ++S  YVLLSN+YAA   W+ VA  R +
Sbjct: 1379 ASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNM 1438

Query: 337  MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
            M++  V+K+PG S ++L NKVH F+AGD  H ++  IY  +E I   ++ EGY+P T   
Sbjct: 1439 MRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFA 1498

Query: 397  LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
            L D+ E+ K+ SL  HSEKLA+A+GL+ T P T+++++KNLRVC DCH   K ISK   R
Sbjct: 1499 LVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFER 1558

Query: 457  KIMMRDRNRFHHFVNGTCSCGDYW 480
            ++++RD NRFHHF +G CSCGDYW
Sbjct: 1559 EVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 134/285 (47%), Gaps = 35/285 (12%)

Query: 40   SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
            S VS TT++  Y+K G++  A  LF + +  D+  WN M+ GY   G   +AL L+  M 
Sbjct: 1043 SFVS-TTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQ 1101

Query: 100  AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
                  N++T      A G +  L+ G+ I + +   R   +++ V + +++MY KCG +
Sbjct: 1102 ESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVK-RGFNLDLFVISGVLDMYLKCGEM 1160

Query: 160  KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            + AR +F+ +   D V W +MI G   +G  + AL  ++ M   +++P + TF  L+ AC
Sbjct: 1161 ESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKAC 1220

Query: 220  AHAGLVNEGRRFF-NTMKDEYAIEP-----------------------------KVEHYG 249
            +    + +GR+   NT+K   A +P                             ++  + 
Sbjct: 1221 SLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWN 1280

Query: 250  CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHG 291
             M+  L++ G  EEA +   +MK   + PD V +  +L AC   G
Sbjct: 1281 AMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSG 1325



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 163/385 (42%), Gaps = 69/385 (17%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            VK  L  D++V+ +LV++YA+ G +  A  LF  M  R +V    M+  Y   G    A 
Sbjct: 754  VKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEAL 813

Query: 62   VLFDDMEE-----------------------------------------------KDVVC 74
            +LF +                                                   DV+ 
Sbjct: 814  LLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIA 873

Query: 75   WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
            WN  +  + Q G   EA+  F  M+  +V  + +T V +LS    +  LE G+ IH  + 
Sbjct: 874  WNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVV 933

Query: 135  NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
             S   +V V VG  LINMY K GS+  AR VF ++N+ D+V WN+MI G A+ G  + ++
Sbjct: 934  RSGLDQV-VSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSV 992

Query: 195  QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT------MKDEYAIEPKVEHY 248
             +F ++ R  L P   T   +L AC+  G    G     T      MK    ++  V   
Sbjct: 993  GMFVDLLRGGLLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLDSFVS-- 1046

Query: 249  GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE---KIAEYLIS 305
              ++++ S++G++EEA  L ++     D   W  +     +HG I  G+    +  Y++ 
Sbjct: 1047 TTLIDVYSKSGKMEEAEFLFVNQD-GFDLASWNAM-----MHGYIVSGDFPKALRLYILM 1100

Query: 306  QNLANSGTYVLLSNIYAAIGNWDGV 330
            Q        + L+N   A G   G+
Sbjct: 1101 QESGERANQITLANAAKAAGGLVGL 1125



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 158/385 (41%), Gaps = 62/385 (16%)

Query: 47   MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
            ++  Y K G V+ AR +F  M E D+V WN MI G A  GL   ++ +F  +L   + P+
Sbjct: 947  LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPD 1006

Query: 107  EVTAVAVLSACGQI-GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            + T  +VL AC  + G       IH+    +  + ++  V T LI++YSK G +++A  +
Sbjct: 1007 QFTVASVLRACSSLGGGCHLATQIHACAMKA-GVVLDSFVSTTLIDVYSKSGKMEEAEFL 1065

Query: 166  FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI------------ 213
            F   +  D+  WN+M+ GY + G    AL+L+  M     + + IT              
Sbjct: 1066 FVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGL 1125

Query: 214  -----------------------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
                                   G+L      G +   RR FN +     +       GC
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185

Query: 251  MVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
            + N     GQ E A   Y  +   K++PD   + TL+ AC L   +  G +I    +  N
Sbjct: 1186 VEN-----GQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLN 1240

Query: 308  LA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
             A +      L ++YA  GN         +   +G+ K    S I   N +   + G  +
Sbjct: 1241 CAFDPFVMTSLVDMYAKCGN---------IEDARGLFKRTNTSRIASWNAM---IVGLAQ 1288

Query: 367  HPKSKEIYMMLEEINGWLKAEGYVP 391
            H  ++E     EE    +K+ G  P
Sbjct: 1289 HGNAEEALQFFEE----MKSRGVTP 1309



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 15/185 (8%)

Query: 37  PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVL 94
           P R L +   ++T Y+K G +++AR LFD   +  +D+V WN ++  +A    A +   L
Sbjct: 659 PDRFLTN--NLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADK--ARDGFHL 714

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALI 150
           FR +    V     T   V   C    +  +   +H Y      +K+ +Q    V  AL+
Sbjct: 715 FRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYA-----VKIGLQWDVFVAGALV 769

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           N+Y+K G +++AR++FD +  +DVV+WN M+  Y   G   +AL LF+E  R  L+P D+
Sbjct: 770 NIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDV 829

Query: 211 TFIGL 215
           T   L
Sbjct: 830 TLCTL 834



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 31/165 (18%)

Query: 1    TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            TVK +   D +V TSLVD+YA+ G++  A  LF       + S   M+   A+ G     
Sbjct: 1236 TVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGN---- 1291

Query: 61   RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                       A EAL  F  M +  V P+ VT + VLSAC   
Sbjct: 1292 ---------------------------AEEALQFFEEMKSRGVTPDRVTFIGVLSACSHS 1324

Query: 121  GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            G +         ++    I+  ++  + L++  S+ G +++A  V
Sbjct: 1325 GLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKV 1369


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 292/434 (67%), Gaps = 2/434 (0%)

Query: 47   MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
            ++  YAK G V +A  +F+ ++EK +V WN MI G++Q+G + EA+ LF +M    V+ +
Sbjct: 641  LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMD 700

Query: 107  EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            ++T ++V+ AC  +G LE G+W+H  +     ++ +  + TAL +MYSKCG L+ A  VF
Sbjct: 701  KLTFLSVIQACSHLGYLEKGKWVHHKL-IMYGLRKDSYLDTALTDMYSKCGELQMAHGVF 759

Query: 167  DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            DR++++ +V W+ MI GY MHG     + LFN+M    +KP+DITF+ +LSAC+HAG V 
Sbjct: 760  DRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVE 819

Query: 227  EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            EG+ +FN+M  E+ +EPK +H+ CMV+LLSRAG +  AY+++  +    +S +WG LL  
Sbjct: 820  EGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNG 878

Query: 287  CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            CR+H  I + + I + L+  + A++G Y LLSNIYA  G WD   +VR++MK KG++K P
Sbjct: 879  CRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVP 938

Query: 347  GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
            G S+IE+  K++ F  GD  H ++K+IY  LE     + A+ Y  +    +    +  K+
Sbjct: 939  GYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKE 998

Query: 407  NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
            N++  HSEKLA+AFG+I+T+PGT+++I KNLRVC DCH+  K+ SK TGR+I+MRD NRF
Sbjct: 999  NNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRF 1058

Query: 467  HHFVNGTCSCGDYW 480
            H F NG+CSC DYW
Sbjct: 1059 HCFRNGSCSCNDYW 1072



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 136/247 (55%), Gaps = 4/247 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  G +     +F+ ++EK ++ WN +I  + ++G   EAL+LF +M  + + P+
Sbjct: 541 LMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 600

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             +  + LSACG I   + G  IH YI  + N    VQ   ALI+MY+KCG +  A  +F
Sbjct: 601 SYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQ--NALIDMYAKCGFVHSANKMF 658

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +++ +K +V WNSMI G++ +G+  +A+ LF++M    +K   +TF+ ++ AC+H G + 
Sbjct: 659 EKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLE 718

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G+   + +   Y +         + ++ S+ G+++ A+  V D   E   V W  ++  
Sbjct: 719 KGKWVHHKLI-MYGLRKDSYLDTALTDMYSKCGELQMAHG-VFDRMSERSIVSWSVMIAG 776

Query: 287 CRLHGNI 293
             +HG I
Sbjct: 777 YGMHGQI 783



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 145/296 (48%), Gaps = 27/296 (9%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
            ST L++ YA+ G   S++++F T P+        ++ CY   G    A  L+ +M  +D
Sbjct: 382 ASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQD 441

Query: 72  VVCWNVMI--------DGYA------QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
               +  +         G+       ++G A+E L +F +M++E VEP+ VT ++V  AC
Sbjct: 442 QTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEAC 501

Query: 118 GQIGAL--------ESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
            ++G+L        + GR +H + I  + + +++  +G AL+ +Y+  G+L+D   VF+ 
Sbjct: 502 SELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDF-LGPALMELYADTGNLRDCHKVFET 560

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           + +K ++ WN++I  +  +G  ++AL LF +M    L P   +    LSAC        G
Sbjct: 561 IKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLG 620

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +    +         V++   ++++ ++ G V  A K+   +K E   V W +++
Sbjct: 621 AQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMI 673



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +   Y+K GE+  A  +FD M E+ +V W+VMI GY  HG  N  + LF +ML   ++
Sbjct: 740 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIK 799

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG--TALINMYSKCGSLKDA 162
           PN++T + +LSAC   GA+E G+    Y  +     V  +      ++++ S+ G L  A
Sbjct: 800 PNDITFMHILSACSHAGAVEEGKL---YFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGA 856

Query: 163 RLVFDRVN-DKDVVVWNSMIVGYAMH 187
             +   +    +  +W +++ G  +H
Sbjct: 857 YQIITSLPFPANSSIWGALLNGCRIH 882


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/478 (43%), Positives = 304/478 (63%), Gaps = 29/478 (6%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VS SL+ +YA+  ++ SAE +F  M ++ +VS T+M+T +++ G +A AR  FD M  K+
Sbjct: 408 VSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKN 467

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIH 130
           V+ WN M+  Y QHG   + L ++  ML+EK V P+ VT V +   C  +GA + G  I 
Sbjct: 468 VITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQI- 526

Query: 131 SYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
                 R +KV    +  V  A+I MYSKCG + +AR VFD +N KD+V WN+MI GY+ 
Sbjct: 527 ----IGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG GK A+++F+++ +   KP  I+++ +LS C+H+GLV EG+ +F+ MK  + I P +E
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLE 642

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           H+ CMV+LL RAG + EA  L+ +M ++P + +WG LL AC++HGN  L E  A+++   
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFEL 702

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
           +  +SG+Y+L++ IYA  G  D  A++R LM++KG++K PG S +E++NKVH F A D+ 
Sbjct: 703 DSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVS 762

Query: 367 HPKSKEIYMMLEEINGWLKAEGYV----PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           HP+   I   L+E+   +   GYV    P+++I  H             HSEKLAVAFGL
Sbjct: 763 HPQVIAIRKKLDELMEKIARLGYVRTDSPRSEI--H-------------HSEKLAVAFGL 807

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +S      I I+KNLR+C DCH V KLIS  TGR+ ++RD  RFHHF  G+CSCGDYW
Sbjct: 808 MSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 172/345 (49%), Gaps = 9/345 (2%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V+ +LVD++ R G V  A +LF  + + ++    +ML  Y K   V  A  
Sbjct: 166 KFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALE 225

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M E+DVV WN+M+   +Q G   EAL +   M ++ V  +  T  + L+AC ++ +
Sbjct: 226 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 285

Query: 123 LESGRWIHSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L  G+ +H+ +   RN+  ++  V +AL+ +Y+KCG  K+A+ VF+ ++D++ V W  +I
Sbjct: 286 LRWGKQLHAQV--IRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLI 343

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G+  HG   ++++LFN+M    +         L+S C     +  GR+  +       I
Sbjct: 344 AGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +  V     ++++ ++   ++ A  +   M  E D V W +++ A    GNIA   K  E
Sbjct: 404 QAVVVS-NSLISMYAKCDNLQSAESIFRFMN-EKDIVSWTSMITAHSQVGNIA---KARE 458

Query: 302 YLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE 345
           +    +  N  T+  +   Y   G   DG+     ++ EK V+ +
Sbjct: 459 FFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPD 503



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 55/334 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFAT-MPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A +L  T +   ++++   ML  Y K G ++ A
Sbjct: 31  VAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDA 90

Query: 61  RVLFDDMEEKDVVCWNVMIDGY--AQHGLAN-EALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             LF  M  +DV  WN ++ GY  +Q  LA+ E+ V   R  +    PN  T    + +C
Sbjct: 91  VELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR--SGDSSPNAFTFAYAMKSC 148

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G +G       +   ++   + + +  V  AL++M+ +CG++  A  +F R+ +  +   
Sbjct: 149 GALGERSLALQLLGMVQKFGS-QDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCR 207

Query: 178 NSMIVGYAMHGFGKD-ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           NSM+VGY +  +G D AL+LF+ M      P                             
Sbjct: 208 NSMLVGY-VKTYGVDHALELFDSM------P----------------------------- 231

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNI 293
                E  V  +  MV+ LS++G+V EA  +V+DM+   +  DS  + + L AC    ++
Sbjct: 232 -----ERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSL 286

Query: 294 ALGEKIAEYLISQNLANSGTYV--LLSNIYAAIG 325
             G+++   +I +NL     YV   L  +YA  G
Sbjct: 287 RWGKQLHAQVI-RNLPCIDPYVASALVELYAKCG 319



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 32/189 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  D  V+ +++ +Y++ G +L A K+F  +  + +VS   M+T Y         
Sbjct: 530 TVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY--------- 580

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                 +QHG+  +A+ +F  +L    +P+ ++ VAVLS C   
Sbjct: 581 ----------------------SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G ++ G+     ++   NI   ++  + ++++  + G L +A+ + D +  K    VW +
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 679 LLSACKIHG 687


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/438 (44%), Positives = 286/438 (65%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y   G + A+  LFD+M  +D++ W+ +I  +A+ GL +EAL LF++M  ++ +
Sbjct: 132 NALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESD 191

Query: 105 --PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+ V  ++V+SA   +GALE G W+H++I     + + V +G+ALI+MYS+CG +  +
Sbjct: 192 ILPDGVVMLSVISAVSSLGALELGIWVHAFISRI-GVNLTVSLGSALIDMYSRCGDIDRS 250

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VFD +  ++VV W ++I G A+HG G++AL+ F +M    LKP  I F+G+L AC+H 
Sbjct: 251 VKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHG 310

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV EGRR F++M  EY IEP +EHYGCMV+LL RAG V EA+  V  M++ P+SV+W T
Sbjct: 311 GLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRT 370

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGAC  H  + L EK  E +   +  + G YVLLSN Y  +GNW     VR  M+E  +
Sbjct: 371 LLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKI 430

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S + +    HEF++GD  HP+ +EI   L  +   +K  GY P T+ VLHDI E
Sbjct: 431 VKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQE 490

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K++SL  HSEKLAVAF L+  +   +I+++KNLR+C DCH+  K +S F  R I++RD
Sbjct: 491 EEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRD 550

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R+RFHHF  G+CSC D+W
Sbjct: 551 RSRFHHFRKGSCSCRDFW 568


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/434 (46%), Positives = 280/434 (64%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK GE+  +  LF+++ +++ V WN +I GY Q G    A+ LF  ML   ++P 
Sbjct: 379 IMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPT 438

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EVT  +VL A   + ALE G  IHS    +   K  V V  +LI+MY+KCG + DARL F
Sbjct: 439 EVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTV-VANSLIDMYAKCGRINDARLTF 497

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D++N +D V WN+MI GY+MHG   +AL LF+ M     KP+ +TF+G+LSAC++AGL+ 
Sbjct: 498 DKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLY 557

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G+  F +M  +Y I+P +EHY CMV LL R G+ +EA KL+ ++  +P  ++W  LLGA
Sbjct: 558 KGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGA 617

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H  + LG   A++++     +  T+VLLSN+YA  G WD VA VR  M++K V+KEP
Sbjct: 618 CVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEP 677

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S +E    VH F  GD  HP  K I  MLE +N   +  GYVP    VL D+ + +K+
Sbjct: 678 GLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKE 737

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L VHSE+LA+A+GLI T    SI+I+KNLR+C DCH V KLISK   R+I++RD NRF
Sbjct: 738 RHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRF 797

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSCGDYW
Sbjct: 798 HHFRHGVCSCGDYW 811



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 140/246 (56%), Gaps = 5/246 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK GE+  A+ LF++M + D++ W++MI  YAQ   + EAL LF RM    V PN
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +VL AC    +L+ G+ IHS +     +  NV V  A++++Y+KCG ++++  +F
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKF-GLNSNVFVSNAIMDVYAKCGEIENSMKLF 396

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           + + D++ V WN++IVGY   G G+ A+ LF  M    ++P+++T+  +L A A    + 
Sbjct: 397 EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALE 456

Query: 227 EGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G +  + T+K  Y  +  V     ++++ ++ G++ +A +L  D   + D V W  ++ 
Sbjct: 457 PGLQIHSLTIKTMYNKDTVVA--NSLIDMYAKCGRINDA-RLTFDKMNKRDEVSWNAMIC 513

Query: 286 ACRLHG 291
              +HG
Sbjct: 514 GYSMHG 519



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 127/240 (52%), Gaps = 3/240 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+ +G V  AR +FDD+  KD+V W  M+  YA++    E+L LF +M     +
Sbjct: 175 TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYK 234

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T    L +C  + A   G+ +H           ++ VG AL+ +Y+K G + DA+ 
Sbjct: 235 PNNFTISGALKSCLGLEAFNVGKSVHGCALKG-CYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +   D++ W+ MI  YA     K+AL LF  M +  + P++ TF  +L ACA +  
Sbjct: 294 LFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVS 353

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++ G++  + +  ++ +   V     ++++ ++ G++E + KL  ++    D V W T++
Sbjct: 354 LDLGKQIHSCVL-KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTII 411



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 154/349 (44%), Gaps = 55/349 (15%)

Query: 23  GGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
           G D ++ + L   + +R     L +   +L  Y +   +  A  LFD+M + + + +  +
Sbjct: 48  GADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTL 107

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
             GY++    ++AL    R+  E  E N      +L     +        +H+ +    +
Sbjct: 108 AQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGH 167

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
              +  VGTALI+ YS  G++  AR VFD +  KD+V W  M+  YA + F +++LQLFN
Sbjct: 168 -HADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFN 226

Query: 199 EMCRIRLKPSDITFIGLLSAC-----------------------------------AHAG 223
           +M  +  KP++ T  G L +C                                   A +G
Sbjct: 227 QMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSG 286

Query: 224 LVNEGRRFFNTMKDEYAIEPKVE--HYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSV 278
            + + +R F  M       PK +   +  M+   +++ + +EA  L + M+   + P++ 
Sbjct: 287 EIIDAQRLFEEM-------PKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNF 339

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIG 325
            + ++L AC    ++ LG++I   ++   L NS  +V   + ++YA  G
Sbjct: 340 TFASVLQACASSVSLDLGKQIHSCVLKFGL-NSNVFVSNAIMDVYAKCG 387



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 1/154 (0%)

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
           TM  +  V   +++  YAK G +  AR+ FD M ++D V WN MI GY+ HG++ EAL L
Sbjct: 468 TMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNL 527

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F  M     +PN++T V VLSAC   G L  G+     +    +IK  ++  T ++ +  
Sbjct: 528 FDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLG 587

Query: 155 KCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
           + G   +A +L+ +      V+VW +++    +H
Sbjct: 588 RLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIH 621


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 307/480 (63%), Gaps = 33/480 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK+ LD D++V  +L+ +Y   G +  A K+F                            
Sbjct: 111 VKYGLDSDIFVQNALICVYGYCGSLEMAVKVF---------------------------- 142

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQI 120
              D+M E+D V W+ +I  +  +G A+EAL LF +M L +KV P+EVT ++V+SA   +
Sbjct: 143 ---DEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHL 199

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G LE GRW+ ++I     + V+V +GTALI+M+S+CGS+ ++ +VF+++  ++V+ W ++
Sbjct: 200 GDLELGRWVRAFI-GRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTAL 258

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G  +HG   +AL +F+ M +  ++P  +TF G+L AC+H GLV EG   F +++  Y 
Sbjct: 259 INGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYR 318

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           ++P ++HYGCMV++L RAG + EAY  V  M ++P+S++W TLLGAC  H N+ L EK+ 
Sbjct: 319 MDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVK 378

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             +   + + +G  VLLSN+Y A G W   A +R+ M+EK + KEPGCSSI +   +HEF
Sbjct: 379 AKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEF 438

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           ++GD  HP+S++I   L  I G L+  GY+ QT+ VLHDI E+++++SL  HSEKLAVAF
Sbjct: 439 VSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAF 498

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            ++S +   +I+I+KNLR+C DCH+  K IS    RKI++RDRNRFHHF  G CSC DYW
Sbjct: 499 AILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 145/313 (46%), Gaps = 18/313 (5%)

Query: 45  TTMLTCYAKQGE-VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T +L+C A   E ++ AR +F  +   D + +N +I  +++    + +L  F  M +  +
Sbjct: 25  TLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRF-FPSHSLFYFFSMRSNGI 83

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T   VL AC +   L+    +HS I     +  ++ V  ALI +Y  CGSL+ A 
Sbjct: 84  PLDNFTFPFVLKACSR---LQINLHLHSLIVK-YGLDSDIFVQNALICVYGYCGSLEMAV 139

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHA 222
            VFD ++++D V W+++I  +  +G+  +AL LF +M    ++ P ++T + ++SA +H 
Sbjct: 140 KVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHL 199

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G +  G R+         +   V     ++++ SR G ++E+  +   M +  + + W  
Sbjct: 200 GDLELG-RWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTA 257

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN-------WDGVARVRT 335
           L+    +HG     E +A +   +       YV  S +  A  +       WD    +R 
Sbjct: 258 LINGLGVHGRST--EALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRK 315

Query: 336 LMKEKGVQKEPGC 348
           + +   +    GC
Sbjct: 316 VYRMDPLLDHYGC 328


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/548 (38%), Positives = 316/548 (57%), Gaps = 71/548 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAE------------------------------- 30
           VK     ++YV ++LVD+YA+ GD+ +A+                               
Sbjct: 292 VKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEAL 351

Query: 31  KLFATMPQRSL----VSLTTMLTC---------------------------------YAK 53
           +LF  M  R++     +  ++L C                                 YAK
Sbjct: 352 RLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAK 411

Query: 54  QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
            G++  A  +F+ M EKDV+ W  ++ GYAQ+    E+L +F  M    V P++    ++
Sbjct: 412 TGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASI 471

Query: 114 LSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           LSAC ++  LE G+ +H  +I++   ++ +  V  +L+ MY+KCG L DA  +F  +  K
Sbjct: 472 LSACAELTLLEFGKQVHLDFIKSG--LRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK 529

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           DV+ W ++IVGYA +G G+++L+ ++ M     +P  ITFIGLL AC+HAGLV+EGR++F
Sbjct: 530 DVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYF 589

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
             M   Y I+P  EHY CM++L  R+G+++EA +L+  M ++PD+ +W +LL ACR+H N
Sbjct: 590 QQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHEN 649

Query: 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIE 352
           + L E+ A  L      N+  YV+LSN+Y+A   W+ VA++R LMK KG+ KEPGCS +E
Sbjct: 650 LELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLE 709

Query: 353 LSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVH 412
           ++++V+ F++ D  HP+  EIY  ++EI   +K  GYVP     LHD+ ++ K+  L  H
Sbjct: 710 INSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYH 769

Query: 413 SEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           SEKLAVAFGL++  P   I+I KNLRVC DCH+  K IS+   R I++RD N FHHF  G
Sbjct: 770 SEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREG 829

Query: 473 TCSCGDYW 480
            CSCGDYW
Sbjct: 830 ECSCGDYW 837



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 160/333 (48%), Gaps = 35/333 (10%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +T ++  YAK   V+ A  LF  +E   K+ V W  M+ GYAQ+G   +A+  FR M A+
Sbjct: 200 VTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQ 259

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            VE N+ T   +L+AC  + A   G  +H +I  S     NV V +AL++MY+KCG LK+
Sbjct: 260 GVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALVDMYAKCGDLKN 318

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-- 219
           A+ + + + D DVV WNS++VG+  HG  ++AL+LF  M    +K  D TF  +L+ C  
Sbjct: 319 AKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVV 378

Query: 220 -------AHAGLVNEGRRFF----NTMKDEYA---------------IEPKVEHYGCMVN 253
                   H  ++  G   +    N + D YA               +E  V  +  +V 
Sbjct: 379 GSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVT 438

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA- 309
             ++    EE+ K+  DM+   + PD  +  ++L AC     +  G+++    I   L  
Sbjct: 439 GYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRW 498

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +   Y  L  +YA  G  D    +   M+ K V
Sbjct: 499 SQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDV 531



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 9/288 (3%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           + +Y +  L++  ++ G V  A KLF  MPQ+   S  TM++ Y   G +  AR LFD  
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             K  + W+ +I GY + G   EA  LFR M  E  + ++ T  +VL  C  +G +++G 
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVWNSMIVGYA 185
            IH ++  +   + NV V T L++MY+KC  + +A  +F     + K+ V+W +M+ GYA
Sbjct: 183 MIHGFVVKN-GFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH--AGLVNEGRRFFNTMKDEYAIEP 243
            +G G  A++ F  M    ++ +  TF  +L+AC+   A    E    F  +K  +    
Sbjct: 242 QNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGF-IVKSGFGSNV 300

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            V+    +V++ ++ G ++ A  ++  M+ + D V W +L+     HG
Sbjct: 301 YVQ--SALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG 345


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 288/436 (66%), Gaps = 2/436 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q S+   + ++  YA+ G + AA++ FD M  K  V WN +I G+A+ G    AL L  +
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  +  +P   T  +VLSAC  IGALE G+W+H+++  S  +K+   +G  L++MY+K G
Sbjct: 281 MQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKS-GLKLIAFIGNTLLDMYAKAG 339

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+ DA+ VFDR+   DVV WN+M+ G A HG GK+ L  F +M RI ++P++I+F+ +L+
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+H+GL++EG  +F  MK +Y +EP V HY   V+LL R G ++ A + + +M IEP +
Sbjct: 400 ACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +WG LLGACR+H N+ LG   AE     +  +SG  +LLSNIYA+ G W  VA+VR +M
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMM 518

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           KE GV+K+P CS +E+ N VH F+A D  HP+ KEI    EEI+G +K  GYVP T  VL
Sbjct: 519 KESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVL 578

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
             + +++++  L+ HSEKLA+AF L++T  G+ I+I KN+RVC DCHA  K +SK   R+
Sbjct: 579 LFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDRE 638

Query: 458 IMMRDRNRFHHFVNGT 473
           I++RD NRFH F +G+
Sbjct: 639 IIVRDTNRFHRFRDGS 654



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 142/251 (56%), Gaps = 3/251 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV    ++  YAK G +  AR +FD+M  KD+V W  +I G++Q+    +AL+LF +ML 
Sbjct: 123 LVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR 182

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
              +PN  T  ++L A G    L+ G  +H++       + +V VG+AL++MY++CG + 
Sbjct: 183 LGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKY-GYQSSVYVGSALVDMYARCGHMD 241

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+L FD +  K  V WN++I G+A  G G+ AL L  +M R   +P+  T+  +LSACA
Sbjct: 242 AAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACA 301

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G + +G+     M  +  ++        ++++ ++AG +++A K V D  ++PD V W
Sbjct: 302 SIGALEQGKWVHAHMI-KSGLKLIAFIGNTLLDMYAKAGSIDDA-KRVFDRLVKPDVVSW 359

Query: 281 GTLLGACRLHG 291
            T+L  C  HG
Sbjct: 360 NTMLTGCAQHG 370



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 123/257 (47%), Gaps = 38/257 (14%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C ++G +E GR +H+++ +S  +  ++ +   ++NMY+KCG L DAR +FD +  K
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           D+V W ++I G++ +   +DAL LF +M R+  +P+  T   LL A      ++ G +  
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLH 212

Query: 233 ---------------NTMKDEYA--------------IEPKVE-HYGCMVNLLSRAGQVE 262
                          + + D YA              +  K E  +  +++  +R G+ E
Sbjct: 213 AFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGE 272

Query: 263 EAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL---ANSGTYVL 316
            A  L+  M+    +P    + ++L AC   G +  G+ +  ++I   L   A  G  +L
Sbjct: 273 HALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLL 332

Query: 317 LSNIYAAIGNWDGVARV 333
             ++YA  G+ D   RV
Sbjct: 333 --DMYAKAGSIDDAKRV 347


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 292/434 (67%), Gaps = 2/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V +A  +F+ ++EK +V WN MI G++Q+G + EA+ LF +M    V+ +
Sbjct: 444 LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMD 503

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           ++T ++V+ AC  +G LE G+W+H  +     ++ +  + TAL +MYSKCG L+ A  VF
Sbjct: 504 KLTFLSVIQACSHLGYLEKGKWVHHKLI-MYGLRKDSYLDTALTDMYSKCGELQMAHGVF 562

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           DR++++ +V W+ MI GY MHG     + LFN+M    +KP+DITF+ +LSAC+HAG V 
Sbjct: 563 DRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVE 622

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+ +FN+M  E+ +EPK +H+ CMV+LLSRAG +  AY+++  +    +S +WG LL  
Sbjct: 623 EGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNG 681

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H  I + + I + L+  + A++G Y LLSNIYA  G WD   +VR++MK KG++K P
Sbjct: 682 CRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVP 741

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S+IE+  K++ F  GD  H ++K+IY  LE     + A+ Y  +    +    +  K+
Sbjct: 742 GYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKE 801

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           N++  HSEKLA+AFG+I+T+PGT+++I KNLRVC DCH+  K+ SK TGR+I+MRD NRF
Sbjct: 802 NNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRF 861

Query: 467 HHFVNGTCSCGDYW 480
           H F NG+CSC DYW
Sbjct: 862 HCFRNGSCSCNDYW 875



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 159/337 (47%), Gaps = 45/337 (13%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T++L  Y +   +  A   FD M  +DVV W+ ++  + Q+G A+E L +F +M++E VE
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVE 198

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ VT ++V  AC ++G+L  GR +H Y+   R I+ N  +  +LI MY K G L  A  
Sbjct: 199 PDSVTMLSVTEACSELGSLRLGRSVHGYVVR-REIESNASLNNSLIVMYGKLGDLYSAER 257

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ V  +    W  MI  Y   G  ++AL +F +M   +++P+ +T +G+L ACA  G 
Sbjct: 258 LFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGR 317

Query: 225 VNEGR------------------------------------RFFNTMKDEYAIEPKVEHY 248
           V EGR                                    + F T+K     E  +  +
Sbjct: 318 VKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK-----EKTILSW 372

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             ++++ +R GQ EEA  L + M+ +   PDS    + L AC       LG +I  Y+I 
Sbjct: 373 NTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIK 432

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
               N      L ++YA  G      ++   +KEK +
Sbjct: 433 TGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSL 469



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 136/247 (55%), Gaps = 4/247 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA  G +     +F+ ++EK ++ WN +I  + ++G   EAL+LF +M  + + P+
Sbjct: 344 LMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 403

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             +  + LSACG I   + G  IH YI  + N    VQ   ALI+MY+KCG +  A  +F
Sbjct: 404 SYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQ--NALIDMYAKCGFVHSANKMF 461

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +++ +K +V WNSMI G++ +G+  +A+ LF++M    +K   +TF+ ++ AC+H G + 
Sbjct: 462 EKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLE 521

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G+   + +   Y +         + ++ S+ G+++ A+  V D   E   V W  ++  
Sbjct: 522 KGKWVHHKLI-MYGLRKDSYLDTALTDMYSKCGELQMAHG-VFDRMSERSIVSWSVMIAG 579

Query: 287 CRLHGNI 293
             +HG I
Sbjct: 580 YGMHGQI 586



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 46/367 (12%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
            ST+L  L+A          LF T   R   + T ++  YA+ G   +++ +FD   + D
Sbjct: 13  TSTTLTQLHAH---------LFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPD 63

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
              W V+I  Y   G   EA+ L+  M+  ++ + +     +VL AC   G L  G  +H
Sbjct: 64  SFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVH 123

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             +      + +  V T+L+ MY +   L DA   FD +  +DVV W+S+++ +  +G  
Sbjct: 124 GRVIKC-GFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQA 182

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR-------------------- 230
            + L +F++M    ++P  +T + +  AC+  G +  GR                     
Sbjct: 183 SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSL 242

Query: 231 --FFNTMKDEYAIEPKVEHYGC--------MVNLLSRAGQVEEAYKLVMDM---KIEPDS 277
              +  + D Y+ E   E+  C        M++  +++G  +EA  +   M   K+EP+ 
Sbjct: 243 IVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ 302

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRT 335
           V    +L AC   G +  G  +  ++I + +     ++   L  +YA  GN     +V  
Sbjct: 303 VTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFE 362

Query: 336 LMKEKGV 342
            +KEK +
Sbjct: 363 TIKEKTI 369



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 127/240 (52%), Gaps = 5/240 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G++ +A  LF+++  +    W  MI  Y Q G   EAL +F +M   K+EP
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           N+VT V VL AC ++G ++ GR +H + I  + + +++  +G AL+ +Y+  G+L+D   
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDF-LGPALMELYADTGNLRDCHK 359

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + +K ++ WN++I  +  +G  ++AL LF +M    L P   +    LSAC     
Sbjct: 360 VFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISF 419

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              G +    +         V++   ++++ ++ G V  A K+   +K E   V W +++
Sbjct: 420 SQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIK-EKSLVTWNSMI 476



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +   Y+K GE+  A  +FD M E+ +V W+VMI GY  HG  N  + LF +ML   ++
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIK 602

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG--TALINMYSKCGSLKDA 162
           PN++T + +LSAC   GA+E G+    Y  +     V  +      ++++ S+ G L  A
Sbjct: 603 PNDITFMHILSACSHAGAVEEGKL---YFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGA 659

Query: 163 RLVFDRVN-DKDVVVWNSMIVGYAMH 187
             +   +    +  +W +++ G  +H
Sbjct: 660 YQIITSLPFPANSSIWGALLNGCRIH 685


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 305/480 (63%), Gaps = 36/480 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  LD D++V ++L+D+Y+R G++ +A ++                             
Sbjct: 90  IKIGLDSDVFVRSALIDVYSRWGELENALRV----------------------------- 120

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             FD+M   D+V W+ +I G+AQ+   +EAL LF+RM        + T  +VL AC  + 
Sbjct: 121 --FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 122 ALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            LE GR +H ++ +  +++ +N     AL++MY KCGSL+DA  VF R+ +KDV+ W++M
Sbjct: 179 LLELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDANAVFVRMVEKDVISWSTM 234

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A +G+ K+AL+LF  M  + +KP+ +T +G+L AC+HAGLV EG  +F++MK+ + 
Sbjct: 235 IAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFG 294

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P  EHYGCM++LL RAG++ EA  L+ +M+ EPD+V W  LL ACR+H N+ +    A
Sbjct: 295 IDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAA 354

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + ++  +  ++GTYVLLSNIYA    W+ VA VR  M  +G++KEPGCS IE+S ++H F
Sbjct: 355 KQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAF 414

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP+ +EI + L ++   L   GYVP T  VL D+  +Q Q+SL  HSEKLA+ F
Sbjct: 415 ILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVF 474

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+S   G +I+I KNLR+C DCH   KL++K   R I++RD  R+HHF +G CSCGD+W
Sbjct: 475 GLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 133/284 (46%), Gaps = 35/284 (12%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K G +  A+ +FD M +++VV W  MI  Y+   L ++AL     ML E V
Sbjct: 3   INILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV 62

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T  +VL AC  +  L   R +H  I     +  +V V +ALI++YS+ G L++A 
Sbjct: 63  RPNMFTYSSVLRACDGLFNL---RQLHCCIIKI-GLDSDVFVRSALIDVYSRWGELENAL 118

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD +   D+VVW+S+I G+A +  G +AL+LF  M R        T   +L AC    
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLA 178

Query: 224 LVNEGRRFF-------------NTMKDEYA---------------IEPKVEHYGCMVNLL 255
           L+  GR+               N + D Y                +E  V  +  M+  L
Sbjct: 179 LLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 256 SRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG 296
           ++ G  +EA KL   MK   I+P+ V    +L AC   G +  G
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG 282


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/437 (44%), Positives = 294/437 (67%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKV 103
             ++  Y   G +  A  +FD+M E+D V W+ +I  +  +G A+EAL LF +M L +KV
Sbjct: 123 NALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKV 182

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+EVT ++V+SA   +G LE GRW+ ++I       V+V +GTALI+M+S+CGS+ ++ 
Sbjct: 183 VPDEVTMLSVISAISHLGDLELGRWVRAFI-GRLGFGVSVALGTALIDMFSRCGSIDESI 241

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +VF+++  ++V+ W ++I G  +HG   +AL +F+ M +  ++P  +TF G+L AC+H G
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGG 301

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG   F +++  Y ++P ++HYGCMV++L RAG + EAY  V  M ++P+S++W TL
Sbjct: 302 LVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTL 361

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC  H N+ L EK+   +   + + +G  VLLSN+Y A G W   A +R+ M+EK + 
Sbjct: 362 LGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIG 421

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPGCSSI +   +HEF++GD  HP+S++I   L  I G L+  GY+ QT+ VLHDI E+
Sbjct: 422 KEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEE 481

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           ++++SL  HSEKLAVAF ++S +   +I+I+KNLR+C DCH+  K IS    RKI++RDR
Sbjct: 482 EREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDR 541

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G CSC DYW
Sbjct: 542 NRFHHFEKGLCSCHDYW 558



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 143/313 (45%), Gaps = 18/313 (5%)

Query: 45  TTMLTCYAKQGE-VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T +L+C A   E ++ AR +F  +   D + +N +I  +++    + +L  F  M +  +
Sbjct: 25  TLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHSRF-FPSHSLSYFFSMRSNGI 83

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T   VL AC +   L+    +HS I     +  ++ V  ALI +Y  CGSL+ A 
Sbjct: 84  PLDNFTFPFVLKACSR---LQINLHLHSLIVK-YGLGSDIFVQNALICVYGYCGSLEMAV 139

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHA 222
            VFD ++++D V W+++I  +  +G+  +AL LF +M    ++ P ++T + ++SA +H 
Sbjct: 140 KVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHL 199

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G +  G R+             V     ++++ SR G ++E+  +   M +  + + W  
Sbjct: 200 GDLELG-RWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTA 257

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN-------WDGVARVRT 335
           L+    +HG     E +A +   +       YV  S +  A  +       WD    +R 
Sbjct: 258 LINGLGIHGRSM--EALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRK 315

Query: 336 LMKEKGVQKEPGC 348
           +     +    GC
Sbjct: 316 VYGMDPLLDHYGC 328


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/440 (45%), Positives = 283/440 (64%), Gaps = 2/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V+ T+++  YAK G +  A  +F  M  ++ V W+ MI G+AQ+G ++EAL LFR M A
Sbjct: 244 VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQA 303

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P+    V+ L AC  IG L+ GR +H +I   R    N  +GTA I+MYSKCGSL 
Sbjct: 304 SGIQPDSGALVSALLACSNIGFLKLGRSVHGFI--VRRFDFNCILGTAAIDMYSKCGSLA 361

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+++F+ ++D+D+++WN+MI     HG G+DAL LF EM    ++P   TF  LLSA +
Sbjct: 362 SAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F  M + + I P  +HY C+V+LL+R+G VEEA  L+  MK EP   +W
Sbjct: 422 HSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIW 481

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LL  C  +  + LGE IA+ ++     + G   L+SN+YAA   WD V +VR LMK+ 
Sbjct: 482 VALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDS 541

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCSSIE+    H FL  D  HP+ +EI   + +++  ++  GY+P+T+ V HD+
Sbjct: 542 GSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDL 601

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+  L  HSEKLA+AFGL++T PGT + I+KNLRVC DCH   K ISK   R+I++
Sbjct: 602 EEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVV 661

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSC DYW
Sbjct: 662 RDAKRFHHFKDGVCSCRDYW 681



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 142/297 (47%), Gaps = 36/297 (12%)

Query: 44  LTTMLTCYAKQGEVAAAR-VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           ++++   YA+ G++AAA   L        +  WN +I  +++ G    AL +FR  L   
Sbjct: 45  ISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFR-ALPPA 103

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+  T    LSAC ++G L  G  +     ++   K +V V ++L+++Y++ G++ DA
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDA-GYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-- 220
             VFDR+  +D V W++M+ G+   G   DA+Q++  M    +K  ++  IG++ AC   
Sbjct: 163 VKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 221 ---------HAGLVNEGRRF----FNTMKDEYA----IEPKVEHYGCMVNL--------- 254
                    H  L+  G R       ++ D YA    ++     +G MV+          
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 255 --LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              ++ GQ +EA +L  +M+   I+PDS    + L AC   G + LG  +  +++ +
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR 339


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/481 (43%), Positives = 310/481 (64%), Gaps = 6/481 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAA 59
           ++F    +  ++ SL+  Y     +  A ++   +     SL  L  ++  + + GE   
Sbjct: 38  IRFGYGTNSSIAASLISTYVNCNQLNLAYQVIRQVFSWTVSLAGLNLVIDSFMRIGEYEI 97

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A+ +F  M ++DVV WN MI GY ++G   EAL  F+ ML+  VEP++ T  +V++AC +
Sbjct: 98  AKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACAR 157

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GAL   +W+H  +   R I+VN  + +ALI+MYSKCG ++ A+ VF+ V   DV VWNS
Sbjct: 158 LGALNHAQWLHDLMVQKR-IEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNS 216

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           +I G A+HG   DA+ +F++M    + P  +TF+G+L AC+H GLV EGR++F+ M++ Y
Sbjct: 217 LINGLAVHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYY 276

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           +I+P++EHYG MV+LL RAG ++EAY ++  M +EPD ++W  LL ACR H N  LGE +
Sbjct: 277 SIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGE-V 335

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A   IS     SG YVLLSNIY +   WD    VR +MKE+GV+K  G S  E  + VH 
Sbjct: 336 AVANISG--PKSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSWFEWEDVVHR 393

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F AGD  HP+++ +Y +LE +    K EG+VP T++V+ D+ E++K+ +L  HSEKLA+A
Sbjct: 394 FRAGDKSHPETEALYKILEGLIQRTKLEGFVPSTELVMMDVSEEEKEENLYHHSEKLALA 453

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           +G++ T PGT I+I KNLR+C DCH   K++S    R I++RDR RFH F  G+CSCGDY
Sbjct: 454 YGILKTSPGTEIRIYKNLRICYDCHNWIKMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDY 513

Query: 480 W 480
           W
Sbjct: 514 W 514


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/437 (42%), Positives = 286/437 (65%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y K G + AA  LF++M  + +V WN M+  +  +G A + + LF  M    +
Sbjct: 202 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGI 261

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P++ T VA+L AC   G       IH+YI        ++ + TAL+N+Y+K G L  + 
Sbjct: 262 NPDQATMVALLRACTDTGLGRQAESIHAYIHRC-GFNADIIIATALLNLYAKLGRLNASE 320

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+ + D+D + W +M+ GYA+H  G++A++LF+ M +  ++   +TF  LLSAC+H+G
Sbjct: 321 DIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSG 380

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F  M + Y +EP+++HY CMV+LL R+G++E+AY+L+  M +EP S +WG L
Sbjct: 381 LVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 440

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR++GN+ LG+++AE L+S + ++   Y++LSNIY+A G W   ++VR LMKE+ + 
Sbjct: 441 LGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLT 500

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           + PGCS IE  NK+H F+ GD  HP+S EI+  LEE+   ++  G  P+T+ VLHDI E+
Sbjct: 501 RNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEE 560

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K + +  HSEKLA+AFGL+ T  G  + I KNLR+C DCH+  K  S    R I++RD 
Sbjct: 561 VKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDS 620

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSC DYW
Sbjct: 621 KRFHHFADGLCSCRDYW 637



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 4/246 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP 105
           +++ Y K G    A+ LFD+M  KD+V WN ++ G +  G     L  F RM  E   +P
Sbjct: 103 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 162

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NEVT ++V+SAC  +GAL+ G+ +H  +     +    +V  +LINMY K G L  A  +
Sbjct: 163 NEVTLLSVVSACADMGALDEGKSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQL 221

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  + +V WNSM+V +  +G+ +  + LFN M R  + P   T + LL AC   GL 
Sbjct: 222 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLG 281

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +       +         +     ++NL ++ G++  +  +  ++K + D + W  +L 
Sbjct: 282 RQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLA 339

Query: 286 ACRLHG 291
              +H 
Sbjct: 340 GYAVHA 345



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 12/203 (5%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++  T +L  YAK G + A+  +F++++++D + W  M+ GYA H    EA+ LF  M+ 
Sbjct: 300 IIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVK 359

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E VE + VT   +LSAC   G +E G+     +     ++  +   + ++++  + G L+
Sbjct: 360 EGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLE 419

Query: 161 DA-RLVFDRVNDKDVVVWNSMIVGYAMHG---FGKD-ALQLFNEMCRIRLKPSD-ITFIG 214
           DA  L+     +    VW +++    ++G    GK+ A QL +      L PSD   +I 
Sbjct: 420 DAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLS------LDPSDHRNYIM 473

Query: 215 LLSACAHAGLVNEGRRFFNTMKD 237
           L +  + AGL  +  +    MK+
Sbjct: 474 LSNIYSAAGLWRDASKVRALMKE 496



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 94/180 (52%), Gaps = 13/180 (7%)

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           + V  +S+C  +    +   IH+ +  S N      +G  L++MY K G  +DA+ +FD 
Sbjct: 67  SLVFAISSCTSVSYCSA---IHARVIKSLNYSDGF-IGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL----KPSDITFIGLLSACAHAGL 224
           + +KD+V WNS++ G +  G+    L   N  CR+R     +P+++T + ++SACA  G 
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACL---NAFCRMRTESGRQPNEVTLLSVVSACADMGA 179

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG+     +  +  +  K +    ++N+  + G ++ A +L  +M +    V W +++
Sbjct: 180 LDEGKSLHGVVV-KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 237


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/448 (46%), Positives = 293/448 (65%), Gaps = 15/448 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y   G +  AR +FD+M E+ +V WN MID   + G  + AL LFR M     EP+
Sbjct: 249 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPD 307

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARL 164
             T  +VLSAC  +G+L  G W H+++    ++ V  +V V  +LI MY KCGSL+ A  
Sbjct: 308 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 367

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSACAHA 222
           VF  +  +D+  WN+MI+G+A HG  ++A+  F+ M   R  ++P+ +TF+GLL AC H 
Sbjct: 368 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 427

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G VN+GR++F+ M  +Y IEP +EHYGC+V+L++RAG + EA  +VM M ++PD+V+W +
Sbjct: 428 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 487

Query: 283 LLGACRLHG-NIALGEKIAEYLI-------SQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
           LL AC   G ++ L E+IA  +I       S N   SG YVLLS +YA+   W+ V  VR
Sbjct: 488 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 547

Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QT 393
            LM E G++KEPGCSSIE++   HEF AGD  HP++K+IY  L+ I+  L++ GY+P ++
Sbjct: 548 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 607

Query: 394 QIVLHD-IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           Q  L D   +  K+ SL +HSE+LA+AFGLI+  P T I+I KNLRVC DCH V KLISK
Sbjct: 608 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 667

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I++RDR RFHHF +G+CSC DYW
Sbjct: 668 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)

Query: 27  LSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           L A  L  T P+   +L     +L   +   +V  A  +FD +E      WN +I   A 
Sbjct: 124 LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAH 183

Query: 85  H-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                 EA +L+R+ML   +  P++ T   VL AC  I     G+ +H  I        +
Sbjct: 184 DVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK-HGFGGD 242

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V   LI++Y  CG L  AR VFD + ++ +V WNSMI      G    ALQLF EM R
Sbjct: 243 VYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR 302

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGR--RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              +P   T   +LSACA  G ++ G     F   K +  +   V     ++ +  + G 
Sbjct: 303 -SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGS 361

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  A ++   M+ + D   W  ++     HG
Sbjct: 362 LRMAEQVFQGMQ-KRDLASWNAMILGFATHG 391



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AEK 102
            +++  Y K G +  A  +F  M+++D+  WN MI G+A HG A EA+  F RM+   E 
Sbjct: 350 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 409

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN VT V +L AC   G +  GR     +     I+  ++    ++++ ++ G + +A
Sbjct: 410 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 469

Query: 163 -RLVFDRVNDKDVVVWNSMI 181
             +V       D V+W S++
Sbjct: 470 IDMVMSMPMKPDAVIWRSLL 489


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/432 (46%), Positives = 281/432 (65%), Gaps = 5/432 (1%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A++LF  MP R++ S  TMLT YA+ G +  A+ +FD M +KD V W  M+  Y+Q G +
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
            E L LF  M       N      VLS C  I ALE G  +H  +  +    V   VG A
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRA-GYGVGCFVGNA 423

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ MY KCG+++DAR  F+ + ++DVV WN+MI GYA HGFGK+AL++F+ M     KP 
Sbjct: 424 LLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           DIT +G+L+AC+H+GLV +G  +F +M  ++ +  K EHY CM++LL RAG++ EA+ L+
Sbjct: 484 DITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLM 543

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
            DM  EPDS +WG LLGA R+H N  LG   AE +      N+G YVLLSNIYA+ G W 
Sbjct: 544 KDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWR 603

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
              ++R +M+E+GV+K PG S IE+ NKVH F AGD  HP+ ++IY  LE+++  +K  G
Sbjct: 604 DARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAG 663

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           YV  T +VLHD+ E++K++ L+ HSEKLAVA+G+++  PG  I+++KNLRVC DCH  FK
Sbjct: 664 YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723

Query: 449 ----LISKFTGR 456
               L+ K +GR
Sbjct: 724 AWIELMLKVSGR 735



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 23/289 (7%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+    +L+  Y + G +  A +LF  MP R +VS   M++ YA++G++  AR LFD   
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +DV  W  ++ GYAQ+G+  EA    RR+     E N V+  A+++A  Q   ++  + 
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEA----RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKE 307

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           + + +        NV     ++  Y++ G L++A+ VFD +  KD V W +M+  Y+  G
Sbjct: 308 LFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 362

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEH 247
             ++ LQLF EM R     +   F  +LS CA    +  G +    + +  Y +      
Sbjct: 363 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV------ 416

Query: 248 YGCMVN-----LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            GC V      +  + G +E+A     +M+ E D V W T++     HG
Sbjct: 417 -GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 151/338 (44%), Gaps = 71/338 (21%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEV-------- 57
           L+ ++  S   +  + R G V  AE+LFA MP+RS  +   ML  Y+  G +        
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 58  -----------------------AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
                                  A AR LFD+M  +D V +NVMI  +A HGL +    L
Sbjct: 94  AIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVS----L 149

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
            R       E + V+   +L+A  + G +E  R +     NSR  + +V    AL++ Y 
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRT-EWDVISWNALMSGYV 204

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           + G + +AR +FDR+  +DVV WN M+ GYA  G   +A +LF+    +R      T+  
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA-APVR---DVFTWTA 260

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAI----------------EPK----------VEHY 248
           ++S  A  G++ E RR F+ M +  A+                E K          V  +
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 320

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             M+   ++AG +EEA K V D   + D+V W  +L A
Sbjct: 321 NTMLTGYAQAGMLEEA-KAVFDTMPQKDAVSWAAMLAA 357



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 132/265 (49%), Gaps = 20/265 (7%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D      ++  +A  G V  A   F   P++  VS   ML  Y + G V  AR LF+  
Sbjct: 129 RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 188

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E DV+ WN ++ GY Q G  +EA  LF RM    V    V+   ++S   + G +   R
Sbjct: 189 TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEAR 244

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +     ++  ++ +V   TA+++ Y++ G L++AR VFD + +++ V WN+M+  Y   
Sbjct: 245 RLF----DAAPVR-DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQR 299

Query: 188 GFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
               +A +LFN M CR     +  ++  +L+  A AG++ E +  F+TM  + A+     
Sbjct: 300 RMMDEAKELFNMMPCR-----NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS---- 350

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271
            +  M+   S+ G  EE  +L ++M
Sbjct: 351 -WAAMLAAYSQGGCSEETLQLFIEM 374


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 281/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK   +  A V FD +  +D+  W V+I GYAQ   A +A+  FR+M  E ++
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T  + LS C  +  LE+GR +H+    + +   ++ VG+AL+++Y KCG ++ A  
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG-DIFVGSALVDLYGKCGCMEHAEA 410

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +  +D+V WN++I GY+ HG G+ AL+ F  M    + P + TFIG+LSAC+  GL
Sbjct: 411 IFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGL 470

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG++ F++M   Y I P +EHY CMV++L RAG+  E    + +M + P S++W T+L
Sbjct: 471 VEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVL 530

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GAC+LHGN+  GEK A+ L         +Y+LLSNI+A+ G WD V  +R LM  +G++K
Sbjct: 531 GACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKK 590

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS +E+  +VH FL+ D  HPK +EIY  L+++   L + GYVP+T++VLH++  K+
Sbjct: 591 EPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKE 650

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSE+LA++F L+ST     I+I KNLR+C DCH   KLIS  T ++I++RD  
Sbjct: 651 KMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIR 710

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  GTCSC D W
Sbjct: 711 RFHHFKRGTCSCQDRW 726



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 186/390 (47%), Gaps = 34/390 (8%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +F+L   +  +T++ DL  R G  +            +LVS   ++  Y K   V     
Sbjct: 152 QFTLSSLVSTATNMGDL--RYGQSIHGCICKYGFESDNLVS-NPLIMMYMKSRCVEDGNK 208

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ M   D+V WN ++ G+           +F +ML E  +PN  T ++VL +C  +  
Sbjct: 209 VFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLD 268

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            E G+ +H++I  + +   +  VGTAL++MY+K   L+DA + FDR+ ++D+  W  +I 
Sbjct: 269 PEFGKQVHAHIIKNSSDDDDF-VGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIIS 327

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GYA     + A++ F +M R  +KP++ T    LS C+H   +  GR+        +A+ 
Sbjct: 328 GYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVA 380

Query: 243 PKVEHYG------CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
            K  H+G       +V+L  + G +E A  +   + I  D V W T++     HG    G
Sbjct: 381 VKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQ---G 436

Query: 297 EKIAE---YLISQN-LANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKEPGCSSI 351
           EK  E    ++S+  + +  T++ + +  + +G   +G  R  ++ K  G+       SI
Sbjct: 437 EKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGIN-----PSI 491

Query: 352 ELSNKVHEFLAGDLRHPKSKEIYMMLEEIN 381
           E    + + L    R  K  E+ + +EE+N
Sbjct: 492 EHYACMVDILG---RAGKFNEVKIFIEEMN 518



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  LF  M EK+ V WN +++GYAQ G   + L LF +M   + + ++ T   VL  C  
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
            G+L  G+ +H+    S   +++  +G +L++MYSKCG++ DA  VF ++ + DVV W++
Sbjct: 64  TGSLREGKVLHALALRS-GCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSA 122

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G    G G++A +LF+ M R   +P+  T   L+S   + G +  G+     +  +Y
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC-KY 181

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             E        ++ +  ++  VE+  K V +    PD V W  LL
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNK-VFEAMTNPDLVSWNALL 225



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 6/199 (3%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTC-----YAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           L   K+   +  RS   +   L C     Y+K G V  A  +F  +   DVV W+ MI G
Sbjct: 67  LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITG 126

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
             Q G   EA  LF  M  +   PN+ T  +++S    +G L  G+ IH  I      + 
Sbjct: 127 LDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI-CKYGFES 185

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +  V   LI MY K   ++D   VF+ + + D+V WN+++ G+          ++F +M 
Sbjct: 186 DNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQML 245

Query: 202 RIRLKPSDITFIGLLSACA 220
               KP+  TFI +L +C+
Sbjct: 246 LEGFKPNMFTFISVLRSCS 264


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/431 (46%), Positives = 296/431 (68%), Gaps = 5/431 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K GE+++A  LF+ M+ KD+V WN  I    Q G +  AL  F +M A+ V+
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T V++LSACGQ+G+L+ G  I+        I+ N+ V  A ++M+ KCGS + AR+
Sbjct: 208 FDSFTVVSMLSACGQLGSLDIGEEIYDRARKEE-IECNIIVENARLDMHLKCGSTEAARV 266

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  ++VV W++MIVGYAM+G   +AL LF  M    L+P+ +TF+G+LSAC+HAGL
Sbjct: 267 LFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGL 326

Query: 225 VNEGRRFFNTMK--DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           VNEG+R+F+ M   ++  +EP+ EHY CMV+LL R+G +EEAY+ +  M++EPD+ +WG 
Sbjct: 327 VNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGA 386

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARVRTLMKEKG 341
           LLGAC +H ++ LG+K+A+ L+ +   + G+Y VLLSNIYAA G WD V +VR+ M++ G
Sbjct: 387 LLGACAVHRDMILGQKVADVLV-ETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
            +K    SS+E   K+H F  GD+ HP+SK IY  L+EI   ++  GYVP T  V HD+ 
Sbjct: 446 TKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVE 505

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            ++K++SL  HSEKLA+AFGLI+ + G  I+++KNLR C DCH   K +S+ T R+I+MR
Sbjct: 506 MEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMR 565

Query: 462 DRNRFHHFVNG 472
           D+NRFHHF NG
Sbjct: 566 DKNRFHHFRNG 576



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 140/280 (50%), Gaps = 5/280 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT +L      G++  AR +FD+M +  +  WN +  GY ++ L  E+++L+++M    V
Sbjct: 46  LTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGV 105

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+E T   V+ A  Q+G L  G  +H+++  +    + + V T L+ MY K G L  A 
Sbjct: 106 RPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGI-VATELVMMYMKFGELSSAE 164

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+ +  KD+V WN+ I      G    AL+ FN+MC   ++    T + +LSAC   G
Sbjct: 165 FLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLG 224

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G   ++  + E  IE  +      +++  + G  E A  L  DMK + + V W T+
Sbjct: 225 SLDIGEEIYDRARKE-EIECNIIVENARLDMHLKCGSTEAARVLFDDMK-QRNVVSWSTM 282

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
           +    ++G+   GE +A + + QN      YV    + +A
Sbjct: 283 IVGYAMNGDS--GEALALFTMMQNEGLRPNYVTFLGVLSA 320



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 34/188 (18%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  ++ ++ V  + +D++ + G   +A  LF  M QR++VS +TM+  YA  G+      
Sbjct: 238 KEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGD------ 291

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                                    + EAL LF  M  E + PN VT + VLSAC   G 
Sbjct: 292 -------------------------SGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGL 326

Query: 123 LESGRWIHSYIE--NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
           +  G+   S +   N +N++   +    ++++  + G L++A     ++  + D  +W +
Sbjct: 327 VNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGA 386

Query: 180 MIVGYAMH 187
           ++   A+H
Sbjct: 387 LLGACAVH 394


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/448 (46%), Positives = 293/448 (65%), Gaps = 15/448 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y   G +  AR +FD+M E+ +V WN MID   + G  + AL LFR M     EP+
Sbjct: 183 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPD 241

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARL 164
             T  +VLSAC  +G+L  G W H+++    ++ V  +V V  +LI MY KCGSL+ A  
Sbjct: 242 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 301

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSACAHA 222
           VF  +  +D+  WN+MI+G+A HG  ++A+  F+ M   R  ++P+ +TF+GLL AC H 
Sbjct: 302 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 361

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G VN+GR++F+ M  +Y IEP +EHYGC+V+L++RAG + EA  +VM M ++PD+V+W +
Sbjct: 362 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 421

Query: 283 LLGACRLHG-NIALGEKIAEYLI-------SQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
           LL AC   G ++ L E+IA  +I       S N   SG YVLLS +YA+   W+ V  VR
Sbjct: 422 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 481

Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QT 393
            LM E G++KEPGCSSIE++   HEF AGD  HP++K+IY  L+ I+  L++ GY+P ++
Sbjct: 482 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 541

Query: 394 QIVLHD-IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           Q  L D   +  K+ SL +HSE+LA+AFGLI+  P T I+I KNLRVC DCH V KLISK
Sbjct: 542 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 601

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I++RDR RFHHF +G+CSC DYW
Sbjct: 602 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)

Query: 27  LSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           L A  L  T P+   +L     +L   +   +V  A  +FD +E      WN +I   A 
Sbjct: 58  LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAH 117

Query: 85  H-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                 EA +L+R+ML   +  P++ T   VL AC  I     G+ +H  I        +
Sbjct: 118 DVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK-HGFGGD 176

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V   LI++Y  CG L  AR VFD + ++ +V WNSMI      G    ALQLF EM R
Sbjct: 177 VYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR 236

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGR--RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              +P   T   +LSACA  G ++ G     F   K +  +   V     ++ +  + G 
Sbjct: 237 -SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGS 295

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  A ++   M+ + D   W  ++     HG
Sbjct: 296 LRMAEQVFQGMQ-KRDLASWNAMILGFATHG 325



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AEKV 103
           +++  Y K G +  A  +F  M+++D+  WN MI G+A HG A EA+  F RM+   E V
Sbjct: 285 SLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENV 344

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
            PN VT V +L AC   G +  GR     +     I+  ++    ++++ ++ G + +A 
Sbjct: 345 RPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAI 404

Query: 163 RLVFDRVNDKDVVVWNSMI 181
            +V       D V+W S++
Sbjct: 405 DMVMSMPMKPDAVIWRSLL 423


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/448 (46%), Positives = 293/448 (65%), Gaps = 15/448 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y   G +  AR +FD+M E+ +V WN MID   + G  + AL LFR M     EP+
Sbjct: 192 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPD 250

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARL 164
             T  +VLSAC  +G+L  G W H+++    ++ V  +V V  +LI MY KCGSL+ A  
Sbjct: 251 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 310

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSACAHA 222
           VF  +  +D+  WN+MI+G+A HG  ++A+  F+ M   R  ++P+ +TF+GLL AC H 
Sbjct: 311 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 370

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G VN+GR++F+ M  +Y IEP +EHYGC+V+L++RAG + EA  +VM M ++PD+V+W +
Sbjct: 371 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 430

Query: 283 LLGACRLHG-NIALGEKIAEYLI-------SQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
           LL AC   G ++ L E+IA  +I       S N   SG YVLLS +YA+   W+ V  VR
Sbjct: 431 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 490

Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QT 393
            LM E G++KEPGCSSIE++   HEF AGD  HP++K+IY  L+ I+  L++ GY+P ++
Sbjct: 491 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 550

Query: 394 QIVLHD-IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           Q  L D   +  K+ SL +HSE+LA+AFGLI+  P T I+I KNLRVC DCH V KLISK
Sbjct: 551 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 610

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I++RDR RFHHF +G+CSC DYW
Sbjct: 611 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)

Query: 27  LSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           L A  L  T P+   +L     +L   +   +V  A  +FD +E      WN +I   A 
Sbjct: 67  LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAH 126

Query: 85  H-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                 EA +L+R+ML   +  P++ T   VL AC  I     G+ +H  I        +
Sbjct: 127 DVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK-HGFGGD 185

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V   LI++Y  CG L  AR VFD + ++ +V WNSMI      G    ALQLF EM R
Sbjct: 186 VYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR 245

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGR--RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              +P   T   +LSACA  G ++ G     F   K +  +   V     ++ +  + G 
Sbjct: 246 -SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGS 304

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  A ++   M+ + D   W  ++     HG
Sbjct: 305 LRMAEQVFQGMQ-KRDLASWNAMILGFATHG 334



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AEKV 103
           +++  Y K G +  A  +F  M+++D+  WN MI G+A HG A EA+  F RM+   E V
Sbjct: 294 SLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENV 353

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
            PN VT V +L AC   G +  GR     +     I+  ++    ++++ ++ G + +A 
Sbjct: 354 RPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAI 413

Query: 163 RLVFDRVNDKDVVVWNSMI 181
            +V       D V+W S++
Sbjct: 414 DMVMSMPMKPDAVIWRSLL 432


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 284/445 (63%), Gaps = 3/445 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +RS    T +L  Y K G+V  A  +F  +++KD+V W+ M+ GYAQ G    A+ +F  
Sbjct: 29  ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 88

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           +    ++PNE T  ++L+ C    A +  G+  H +   SR +  ++ V +AL+ MY+K 
Sbjct: 89  LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMYAKK 147

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G+++ A  VF R  +KD+V WNSMI GYA HG    AL +F EM + ++K   +TFIG+ 
Sbjct: 148 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 207

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC HAGLV EG ++F+ M  +  I P  EH  CMV+L SRAGQ+E+A K++ +M     
Sbjct: 208 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 267

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           S +W T+L ACR+H    LG   AE +I+    +S  YVLLSN+YA  G+W   A+VR L
Sbjct: 268 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 327

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           M E+ V+KEPG S IE+ NK + FLAGD  HP   +IYM LE+++  LK  GY P T  V
Sbjct: 328 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 387

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           L DI ++ K+  L  HSE+LA+AFGLI+T  G+ + I+KNLRVC DCH V KLI+K   R
Sbjct: 388 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 447

Query: 457 KIMMRDRNRFHHF-VNGTCSCGDYW 480
           +I++RD NRFHHF  +G CSCGD+W
Sbjct: 448 EIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 104/191 (54%), Gaps = 16/191 (8%)

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E T   +L+A   I   E    +H+ +  + N + +  VGTAL++ Y K G +++A  VF
Sbjct: 1   EFTYSVILTALPVISPSE----VHAQVVKT-NYERSSTVGTALLDAYVKLGKVEEAAKVF 55

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL-V 225
             ++DKD+V W++M+ GYA  G  + A+++F E+ +  +KP++ TF  +L+ CA     +
Sbjct: 56  SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 115

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            +G++F       +AI+ +++   C    ++ + ++ G +E A + V   + E D V W 
Sbjct: 116 GQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGNIESAEE-VFKRQREKDLVSWN 169

Query: 282 TLLGACRLHGN 292
           +++     HG 
Sbjct: 170 SMISGYAQHGQ 180



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 34/217 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  LD  L VS++L+ +YA+ G++ SAE++F    ++ LVS  +M++ YA+ G+     
Sbjct: 126 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQ----- 180

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                     A +AL +F+ M   KV+ + VT + V +AC   G
Sbjct: 181 --------------------------AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAG 214

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSM 180
            +E G      +     I    +  + ++++YS+ G L+ A  V + + N     +W ++
Sbjct: 215 LVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTI 274

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +H   K  L        I +KP D     LLS
Sbjct: 275 LAACRVH--KKTELGRLAAEKIIAMKPEDSAAYVLLS 309


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 308/479 (64%), Gaps = 6/479 (1%)

Query: 7   DKDLYVS----TSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAAAR 61
           DK + +S     +L+D+YA+ GD   A ++F  + + R       M+  Y K G V  AR
Sbjct: 265 DKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIAR 324

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD ME+ DV+ +N +I GY   G   EAL+LF +M    +  +  T V +L+A   +G
Sbjct: 325 SLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLG 384

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  GR +H+ IE  R ++ +V +GTAL++MY KCG +++A + F +++ +DV  W++MI
Sbjct: 385 ALPQGRALHACIEQ-RLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMI 443

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A +G GK AL+ F  M       + +T+I +L+AC+H+ L++EGR +F+ M+  + I
Sbjct: 444 GGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNI 503

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P++EHYGCM++LL R+G ++EA  LV  M ++P++V+W ++L ACR+H N+ L +  A 
Sbjct: 504 RPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAH 563

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L+    A    YV + NIY     W+  +++R LM+++GV+K  G SSI ++ +VH+F+
Sbjct: 564 HLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFI 623

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP+  EI +M+EEI   LK+ GY P T  +  D+ E++K+ +L  HSEKLA+AFG
Sbjct: 624 VGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFG 683

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+S  P   + I+KNLRVC DCH+  KLIS+   R+I++RDR+RFHHF  G CSC D+W
Sbjct: 684 LVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 42/340 (12%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +++ ++ +YA  G    A + F     + +V+ TT+++  AK G +  AR L      ++
Sbjct: 142 IASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRN 201

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           VV W  +I GY++ G A EA+  F  ML++ + P+EVT + +LSACGQ+  L  G  +H 
Sbjct: 202 VVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHM 261

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLV-------------------------- 165
            + + R +  +  V  ALI+MY+KCG    AR V                          
Sbjct: 262 LVGDKRMLMSDKLV-VALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHV 320

Query: 166 ------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
                 FD++ D DV+ +NS+I GY   G  ++AL LF +M R  L   + T +GLL+A 
Sbjct: 321 DIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTAS 380

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G + +GR     + ++  +E  V     ++++  + G+VEEA      M +  D   
Sbjct: 381 ASLGALPQGRALHACI-EQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHT 438

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYV 315
           W  ++G    +G   +G+   E+          ANS TY+
Sbjct: 439 WSAMIGGLAFNG---MGKAALEHFFWMKCDGFHANSVTYI 475


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/444 (45%), Positives = 291/444 (65%), Gaps = 2/444 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +  LV  T ++  Y+K G +  A ++F  M +K+V+ W  M+ G +Q+G A +AL LF +
Sbjct: 379 ESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQ 438

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  EKV  N VT V+++  C  +G+L  GR +H++         +  + +ALI+MY+KCG
Sbjct: 439 MQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIR-HGYAFDAVITSALIDMYAKCG 497

Query: 158 SLKDARLVFD-RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            +  A  +F+   + KDV++ NSMI+GY MHG G+ AL +++ M   RLKP+  TF+ LL
Sbjct: 498 KIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLL 557

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC+H+GLV EG+  F++M+ ++ + P+ +HY C+V+L SRAG++EEA +LV  M  +P 
Sbjct: 558 TACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPS 617

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           + +   LL  CR H N  +G +IA+ LIS +  NSG YV+LSNIYA    W+ V  +R L
Sbjct: 618 TDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGL 677

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           M+ +G++K PG S IE+ NKV+ F A D  HP   +IY +LE +   ++AEGY+P T  V
Sbjct: 678 MRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCV 737

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           L D+ E  K   L  HSE+LA+AFGL+ST  G+ IKI KNLRVC DCH V K ISK   R
Sbjct: 738 LRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQR 797

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++RD NRFHHFVNG CSC D+W
Sbjct: 798 EIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 159/276 (57%), Gaps = 5/276 (1%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           LT+++  Y+  G+  +A ++FD M  + ++ WN MI GY Q+G+  E+  LFRR++    
Sbjct: 284 LTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +  T V+++  C Q   LE+GR +HS I   + ++ ++ + TA+++MYSKCG++K A 
Sbjct: 344 GFDSGTLVSLIRGCSQTSDLENGRILHSCIIR-KELESHLVLSTAIVDMYSKCGAIKQAT 402

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           +VF R+  K+V+ W +M+VG + +G+ +DAL+LF +M   ++  + +T + L+  CAH G
Sbjct: 403 IVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLG 462

Query: 224 LVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            + +GR    + ++  YA +  +     ++++ ++ G++  A KL  +     D +L  +
Sbjct: 463 SLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNS 520

Query: 283 LLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLL 317
           ++    +HG+      +   +I + L  N  T+V L
Sbjct: 521 MIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSL 556



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 146/315 (46%), Gaps = 35/315 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++M+    K+G +A A+ +FD M EKDVVCWN +I GY Q GL  E++ +F  M+   + 
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR 243

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ VT   +L ACGQ G  + G   HSY+  +  +  +V V T+L++MYS  G    A L
Sbjct: 244 PSPVTMANLLKACGQSGLKKVGMCAHSYVL-ALGMGNDVFVLTSLVDMYSNLGDTGSAAL 302

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  + ++ WN+MI GY  +G   ++  LF  + +        T + L+  C+    
Sbjct: 303 VFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSD 362

Query: 225 VNEGRRFFN---------------TMKDEY----AIEPKVEHYG-----------CMVNL 254
           +  GR   +                + D Y    AI+     +G            M+  
Sbjct: 363 LENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVG 422

Query: 255 LSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           LS+ G  E+A KL   M   K+  +SV   +L+  C   G++  G  +  + I    A  
Sbjct: 423 LSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFD 482

Query: 312 GTYV-LLSNIYAAIG 325
                 L ++YA  G
Sbjct: 483 AVITSALIDMYAKCG 497



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 3/183 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+  G +  AR +FD     +    N MI G+ ++    E   LFR M +  +E N
Sbjct: 85  LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEIN 144

Query: 107 EVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
             T +  L AC  +   E G   I + +   R   +++ VG++++N   K G L DA+ V
Sbjct: 145 SYTCMFALKACTDLLDDEVGMEIIRAAVR--RGFHLHLYVGSSMVNFLVKRGYLADAQKV 202

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD + +KDVV WNS+I GY   G   +++Q+F EM    L+PS +T   LL AC  +GL 
Sbjct: 203 FDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLK 262

Query: 226 NEG 228
             G
Sbjct: 263 KVG 265


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/448 (46%), Positives = 293/448 (65%), Gaps = 15/448 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y   G +  AR +FD+M E+ +V WN MID   + G  + AL LFR M     EP+
Sbjct: 169 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPD 227

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARL 164
             T  +VLSAC  +G+L  G W H+++    ++ V  +V V  +LI MY KCGSL+ A  
Sbjct: 228 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 287

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSACAHA 222
           VF  +  +D+  WN+MI+G+A HG  ++A+  F+ M   R  ++P+ +TF+GLL AC H 
Sbjct: 288 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 347

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G VN+GR++F+ M  +Y IEP +EHYGC+V+L++RAG + EA  +VM M ++PD+V+W +
Sbjct: 348 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 407

Query: 283 LLGACRLHG-NIALGEKIAEYLI-------SQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
           LL AC   G ++ L E+IA  +I       S N   SG YVLLS +YA+   W+ V  VR
Sbjct: 408 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 467

Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QT 393
            LM E G++KEPGCSSIE++   HEF AGD  HP++K+IY  L+ I+  L++ GY+P ++
Sbjct: 468 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 527

Query: 394 QIVLHD-IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
           Q  L D   +  K+ SL +HSE+LA+AFGLI+  P T I+I KNLRVC DCH V KLISK
Sbjct: 528 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 587

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               +I++RDR RFHHF +G+CSC DYW
Sbjct: 588 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)

Query: 27  LSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           L A  L  T P+   +L     +L   +   +V  A  +FD +E      WN +I   A 
Sbjct: 44  LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAH 103

Query: 85  H-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                 EA +L+R+ML   +  P++ T   VL AC  I     G+ +H  I        +
Sbjct: 104 DVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK-HGFGGD 162

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V   LI++Y  CG L  AR VFD + ++ +V WNSMI      G    ALQLF EM R
Sbjct: 163 VYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR 222

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGR--RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              +P   T   +LSACA  G ++ G     F   K +  +   V     ++ +  + G 
Sbjct: 223 -SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGS 281

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +  A ++   M+ + D   W  ++     HG
Sbjct: 282 LRMAEQVFQGMQ-KRDLASWNAMILGFATHG 311



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AEK 102
            +++  Y K G +  A  +F  M+++D+  WN MI G+A HG A EA+  F RM+   E 
Sbjct: 270 NSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKREN 329

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN VT V +L AC   G +  GR     +     I+  ++    ++++ ++ G + +A
Sbjct: 330 VRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEA 389

Query: 163 -RLVFDRVNDKDVVVWNSMI 181
             +V       D V+W S++
Sbjct: 390 IDMVMSMPMKPDAVIWRSLL 409


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/479 (42%), Positives = 303/479 (63%), Gaps = 21/479 (4%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++ + VS SL+ LYA+ GD+ +AE +F++M +R +VS T+M+T Y++ G +  AR  FD 
Sbjct: 403 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 462

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALES 125
           M+ ++ + WN M+  Y QHG   + L ++  ML++K V P+ VT V +   C  IGA + 
Sbjct: 463 MDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL 522

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G  I  +   +  + +NV V  A I MYSKCG + +A+ +FD +N KDVV WN+MI GY+
Sbjct: 523 GDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYS 581

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
            HG GK A + F++M     KP  I+++ +LS C+H+GLV EG+ +F+ M   + I P +
Sbjct: 582 QHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGL 641

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EH+ CMV+LL RAG + EA  L+  M ++P + +WG LL AC++HGN  L E  A+++  
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFE 701

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
            +  +SG+Y+LL+ IY+  G  D  A+VR LM++KG++K PG S +E+ NKVH F A D+
Sbjct: 702 LDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDV 761

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYV----PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            HP+   I   L+E+   +   GYV    P+++I  H             HSEKLAVAFG
Sbjct: 762 SHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEI--H-------------HSEKLAVAFG 806

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++S      I I+KNLR+C DCH V KLIS  T R+ ++RD  RFHHF +G+CSCGDYW
Sbjct: 807 IMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 183/371 (49%), Gaps = 18/371 (4%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V T+LVD++ R G V  A +LF+ + + ++    +ML  YAK   +  A  
Sbjct: 166 KFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 225

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F+DM E+DVV WN+MI   +Q G   EAL L   M  + V  +  T  + L+AC ++ +
Sbjct: 226 YFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFS 285

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G+ +H+ +  S   +++  V +ALI +Y+KCGS K+A+ VF+ + D++ V W  +I 
Sbjct: 286 LGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAI 241
           G   +     +++LFN+M    +         L+S C +   +  GR+  +  +K  +  
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR 404

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
              V +   +++L ++ G ++ A + V     E D V W +++ A    GNI    K  E
Sbjct: 405 AIVVSN--SLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITAYSQIGNII---KARE 458

Query: 302 YLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE--------PGCSSIE 352
           +    +  N+ T+  +   Y   G   DG+     ++ +K V  +         GC+ I 
Sbjct: 459 FFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 518

Query: 353 LSNKVHEFLAG 363
            +NK+ + + G
Sbjct: 519 -ANKLGDQIIG 528



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 140/319 (43%), Gaps = 38/319 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A +L  A + + ++++   M+  YAKQG ++ A
Sbjct: 31  VTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDA 90

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQ 119
             LFD M  +DV  WN ++ GY Q     + L  F  M  +    PN  T   V+ +CG 
Sbjct: 91  EELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGA 150

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--------- 170
           +G  E    +        +   +  V TAL++M+ +CG +  A  +F ++          
Sbjct: 151 LGCRELAPQLLGLFWKF-DFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNS 209

Query: 171 ----------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
                                 ++DVV WN MI   +  G  ++AL L  EM R  ++  
Sbjct: 210 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 269

Query: 209 DITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
             T+   L+ACA    +  G++     ++    I+P V     ++ L ++ G  +EA ++
Sbjct: 270 STTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRV 327

Query: 268 VMDMKIEPDSVLWGTLLGA 286
              ++ + +SV W  L+G 
Sbjct: 328 FNSLQ-DRNSVSWTVLIGG 345



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 32/189 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  ++ V+ + + +Y++ G +  A+KLF  +  + +VS   M+T Y++ G    A
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 589

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              FDD                               ML++  +P+ ++ VAVLS C   
Sbjct: 590 AKTFDD-------------------------------MLSKGAKPDYISYVAVLSGCSHS 618

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G ++ G+     +     I   ++  + ++++  + G L +A+ + D++  K    VW +
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 679 LLSACKIHG 687



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 121/302 (40%), Gaps = 80/302 (26%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           NV     ++N Y+K GSL DA  +FDR+  +DV  WN+++ GY       D L+ F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 202 RIRLK-PSDITFIGLLSACA-----------------------------------HAGLV 225
           R     P+  TF  ++ +C                                      G V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 226 NEGRRFFNTMKDE---------------YAIEPKVEHY-----------GCMVNLLSRAG 259
           +   R F+ ++                 Y I+  +E++             M+  LS++G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 260 QVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV- 315
           +V EA  LV++M    +  DS  + + L AC    ++  G+++   +I ++L     YV 
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI-RSLPQIDPYVA 308

Query: 316 -LLSNIYAAIGNWDGVARVRTLMKEK-----------GVQKEPGCSSIELSNKVH-EFLA 362
             L  +YA  G++    RV   ++++            +Q E    S+EL N++  E +A
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 363 GD 364
            D
Sbjct: 369 ID 370


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/437 (42%), Positives = 285/437 (65%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y K G + AA  LF++M  + +V WN M+  +  +G A + + LF  M    +
Sbjct: 279 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGI 338

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P++ T VA+L AC   G       IH+YI        ++ + TAL+N+Y+K G L  + 
Sbjct: 339 NPDQATMVALLRACTDTGLGRQAESIHAYIHRC-GFNADIIIATALLNLYAKLGRLNASE 397

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+ + D+D + W +M+ GYA+H  G++A++LF+ M +  ++   +TF  LLSAC+H+G
Sbjct: 398 DIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSG 457

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F  M + Y +EP+++HY CMV+LL R+G++E+AY+L+  M +EP S +WG L
Sbjct: 458 LVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 517

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR++GN+ LG+++AE L+S + ++   Y++LSNIY+A G W   ++VR LMKE+ + 
Sbjct: 518 LGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLT 577

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           + PGCS IE  NK+H F+ GD  HP+S EI+  LEE+   +   G  P+T+ VLHDI E+
Sbjct: 578 RNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEE 637

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K + +  HSEKLA+AFGL+ T  G  + I KNLR+C DCH+  K  S    R I++RD 
Sbjct: 638 VKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDS 697

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSC DYW
Sbjct: 698 KRFHHFADGLCSCRDYW 714



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 4/246 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP 105
           +++ Y K G    A+ LFD+M  +D+V WN ++ G +  G     L  F RM  E   +P
Sbjct: 180 LVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 239

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NEVT ++V+SAC  +GAL+ G+ +H  +     +    +V  +LINMY K G L  A  +
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQL 298

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  + +V WNSM+V +  +G+ +  + LFN M R  + P   T + LL AC   GL 
Sbjct: 299 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLG 358

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +       +         +     ++NL ++ G++  +  +  ++K + D++ W  +L 
Sbjct: 359 RQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDTIAWTAMLA 416

Query: 286 ACRLHG 291
              +H 
Sbjct: 417 GYAVHA 422



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V  +S+C  +    +   IH+ +  S N      +G  L++MY K G  +DA+ +FD + 
Sbjct: 146 VFAISSCTSVSYCSA---IHARVIKSLNYSDGF-IGDRLVSMYFKLGYDEDAQRLFDEMP 201

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL----KPSDITFIGLLSACAHAGLVN 226
           ++D+V WNS++ G +  G+    L  F   CR+R     +P+++T + ++SACA  G ++
Sbjct: 202 NRDLVSWNSLMSGLSGRGYLGACLNAF---CRMRTESGRQPNEVTLLSVVSACAXMGALD 258

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           EG+     +  +  +  K +    ++N+  + G ++ A +L  +M +    V W +++
Sbjct: 259 EGKSLHGVVV-KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 314


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 281/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K   + +A  +F  M  K+VV W  M+ GY Q+G + EA+  F  M    +E
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T  +V+S+C  + +LE G   H+    S  I   + V  AL+ +Y KCGS++D+  
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF-ITVSNALVTLYGKCGSIEDSHR 432

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ ++ KD V W +++ GYA  G   + + LF  M    LKP  +TFIG+LSAC+ AGL
Sbjct: 433 LFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGL 492

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +G + F +M +E+ I P  +HY CM++L SRAG++EEA   +  M   PD++ W TLL
Sbjct: 493 VEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLL 552

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +CR +GN+ +G+  AE+L+  +  N+ +YVLLS++YAA G W+ VAR+R  M++KG++K
Sbjct: 553 SSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRK 612

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS I+  N+VH F A D  +P S +IY  LE++N  +  EGYVP    VLHD+G+ +
Sbjct: 613 EPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSE 672

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSEKLA+AFGL+   PG  I++VKNLRVC DCH   K ISK T R+I++RD  
Sbjct: 673 KIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTA 732

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +GTCSCGD+W
Sbjct: 733 RFHLFKDGTCSCGDFW 748



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 169/285 (59%), Gaps = 3/285 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VKF     ++V + LVD+Y++ G +  A K+F  +P++++V   T++    + G V  ++
Sbjct: 170 VKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSK 229

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF +M E+D + W  MI G+ Q+GL  +A+ +FR M  E ++ ++ T  +VL+ACG + 
Sbjct: 230 RLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVM 289

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G+ +H+YI  + + K N+ V +AL++MY KC ++K A  VF ++  K+VV W +M+
Sbjct: 290 ALQEGKQVHAYIIRT-DYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAML 348

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGY  +G+ ++A++ F++M +  ++P D T   ++S+CA+   + EG +F         I
Sbjct: 349 VGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLI 408

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
              +     +V L  + G +E++++L  ++  + D V W  L+  
Sbjct: 409 S-FITVSNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSG 451



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 166/377 (44%), Gaps = 70/377 (18%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           + ++  +L+  YA+ G +  A K+F  MP  +L S  T+L+ Y+K G V+    LFD M 
Sbjct: 43  ETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMP 102

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQIGALESG 126
            +D V WN +I GYA  GL  +++  +  ML        N +T   +L    + G ++ G
Sbjct: 103 RRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLG 162

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV---------- 176
           R IH ++     +   V VG+ L++MYSK G +  AR VFD + +K+VV+          
Sbjct: 163 RQIHGHVVKFGFMSY-VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMR 221

Query: 177 ---------------------WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
                                W SMI G+  +G  +DA+ +F EM    L+    TF  +
Sbjct: 222 CGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSV 281

Query: 216 LSACAHAGLVNEGRRFF-------------------------NTMKDEYAIEPK-----V 245
           L+AC     + EG++                             +K   A+  K     V
Sbjct: 282 LTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNV 341

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             +  M+    + G  EEA K   DM+   IEPD    G+++ +C    N+A  E+ A++
Sbjct: 342 VSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSC---ANLASLEEGAQF 398

Query: 303 LISQNLANSGTYVLLSN 319
                 +   +++ +SN
Sbjct: 399 HARALTSGLISFITVSN 415


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/431 (47%), Positives = 278/431 (64%), Gaps = 2/431 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK G V  AR +FD +  +D V WN MI  Y Q+G   EAL L R M A  + P   T 
Sbjct: 208 YAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATL 267

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V+ +SA     AL  GR +H +    R   +  ++ T+L++MY+K G ++ AR++F+++ 
Sbjct: 268 VSAVSAAADAAALPRGRELHGF-GWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLM 326

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGR 229
            +++V WN+MI GY MHG   +AL LFN+M    ++ P +ITF+G+LSAC H G+V E +
Sbjct: 327 KRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAK 386

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
            FF  M + Y+I+P V+HY C++++L   G+ EEAY L+  M IEPDS +WG LL  C++
Sbjct: 387 EFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKI 446

Query: 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           H N+ LGE   + LI     ++G YV LSNIYA  G W+  ARVR LM  +G++K   CS
Sbjct: 447 HKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACS 506

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            IEL  K H FL GD  HP+S EIY  LE + G +   GYVP    V H++ + +K+N +
Sbjct: 507 WIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMV 566

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSE+LA+AFGLIST PGT + + KNLRVC DCH V KLIS+   R+I++RD NR+HHF
Sbjct: 567 RSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHF 626

Query: 470 VNGTCSCGDYW 480
           VNG CSC DYW
Sbjct: 627 VNGECSCKDYW 637



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 149/272 (54%), Gaps = 6/272 (2%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           R G  L    L + +   +++S T ++  YA  G+V  AR LFD M +++V  WNV+I  
Sbjct: 79  RAGRQLHGRLLVSGLGPDTVLS-TKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRA 137

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           YA+ G    A+ L+R M+   VEP+  T   VL AC  +  LE+GR +H  +  +R  + 
Sbjct: 138 YAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQ- 196

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V V   +++MY+KCG + DAR VFD +  +D VVWNSMI  Y  +G   +AL L  +M 
Sbjct: 197 DVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMA 256

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              + P+  T +  +SA A A  +  GR       +  + ++ K++    +V++ +++G 
Sbjct: 257 ANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLK--TSLVDMYAKSGW 314

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           V+ A +++ +  ++ + V W  ++    +HG+
Sbjct: 315 VQVA-RVLFEQLMKRELVSWNAMICGYGMHGH 345



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 124/254 (48%), Gaps = 25/254 (9%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
           T+++  YAK G V  ARVLF+ + ++++V WN MI GY  HG A+EAL LF +M  + +V
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQV 362

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
            P+ +T V VLSAC   G +E  +     + N+ +IK  VQ  T +I++    G  ++A 
Sbjct: 363 TPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAY 422

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDI-TFIGLLSA 218
            L+     + D  +W +++ G  +H     G+ ALQ       I L+P D   ++ L + 
Sbjct: 423 DLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKL-----IELEPEDAGNYVHLSNI 477

Query: 219 CAHAGLVNEGRRFFNTMKDE--------YAIEPKVEHYGCMVNLLSRA------GQVEEA 264
            A +G   +  R    M +           IE K + +G +V   S        G++E  
Sbjct: 478 YAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERL 537

Query: 265 YKLVMDMKIEPDSV 278
             L+ D    PD +
Sbjct: 538 EGLMSDAGYVPDII 551



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 3/176 (1%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            ++L +C   G+L +GR +H  +  S  +  +  + T L+++Y+ CG +  AR +FD + 
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVS-GLGPDTVLSTKLVDLYAACGQVGHARRLFDGMP 124

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            ++V +WN +I  YA  G  + A++L+  M    ++P + T+  +L ACA    +  GR 
Sbjct: 125 KRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGRE 184

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
               +      +      G +V++ ++ G V++A + V D     D+V+W +++ A
Sbjct: 185 VHQRVSGTRWGQDVFVCAG-VVDMYAKCGCVDDA-RAVFDGIAVRDAVVWNSMIAA 238


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/480 (43%), Positives = 299/480 (62%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  LD +++VS +L+D+YA+ G + ++ KLF  +P R+ V+  TM+            
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIV----------- 317

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GY Q G  ++AL L++ ML  +V+ +EVT  +VL AC  +
Sbjct: 318 --------------------GYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASL 357

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A+E G  IHS    +   K +V VG ALI+MY+KCGS+K+ARLVFD ++++D + WN+M
Sbjct: 358 AAMELGTQIHSLSLKTIYDK-DVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAM 416

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GY+MHG   +AL+ F  M      P+ +TF+ +LSAC++AGL++ G+ +F +M  +Y 
Sbjct: 417 ISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYG 476

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP +EHY CMV LL R+G +++A KL+ ++ +EP+  +W  LLGAC +H ++ LG   A
Sbjct: 477 IEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSA 536

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + ++  +  +  T+VLLSNIYA    W+ VA VR  MK KGV+KEPG S IE    VH F
Sbjct: 537 QQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYF 596

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             GD  HP  K I  MLE +N   +  GYVP    VL D+ + +K+  L VHSE+LA+AF
Sbjct: 597 SVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAF 656

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GLI T     I+I+KNLR+C DCH+  KLISK   R I++RD NRFHHF +G CSCGDYW
Sbjct: 657 GLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y K G+      +F++M + DV+ W+ MI  YAQ   + EA+ LF +M    V PN
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + T  +VL +C  I  L+ G+ +H ++     +  NV V  AL+++Y+KCG L ++  +F
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLKV-GLDGNVFVSNALMDVYAKCGRLDNSMKLF 301

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + +++ V WN+MIVGY   G G  AL L+  M   +++ S++T+  +L ACA    + 
Sbjct: 302 MELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAME 361

Query: 227 EGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G +  + ++K  Y  +  V     ++++ ++ G ++ A +LV DM  E D + W  ++ 
Sbjct: 362 LGTQIHSLSLKTIY--DKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMIS 418

Query: 286 ACRLHGNIALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWD-GVARVRTLMKEKG 341
              +HG   +GE +  + + Q    + N  T+V + +  +  G  D G    ++++++ G
Sbjct: 419 GYSMHG--LVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYG 476

Query: 342 VQ 343
           ++
Sbjct: 477 IE 478



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 3/240 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YA  G V +AR  FD +  KD+V W  M+  YA++    ++L LF  M      
Sbjct: 80  TALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFN 139

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T   VL AC  + A   G+ +H  +  +   ++++ VG  L+++Y+K G   D   
Sbjct: 140 PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKT-CYEMDLYVGVGLLDLYTKFGDANDVLR 198

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ +   DV+ W+ MI  YA     ++A++LF +M R  + P+  TF  +L +CA    
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIEN 258

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G++    +  +  ++  V     ++++ ++ G+++ + KL M++    + V W T++
Sbjct: 259 LQLGKQVHCHVL-KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTMI 316



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 35/296 (11%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M +++ V +  +I GY Q    +E + LF R+  E  E N      +L     +   E  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
             +H+ I    + + N  VGTALI+ Y+ CGS+  AR  FD +  KD+V W  M+  YA 
Sbjct: 61  YSLHACIYKLGH-ESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC--------------------------A 220
           +   +D+LQLF EM  +   P+  TF G+L AC                           
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMK---I 273
             GL++   +F +        E   +H    +  M++  +++ Q  EA +L   M+   +
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWD 328
            P+   + ++L +C    N+ LG+++  +++   L  N      L ++YA  G  D
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLD 295


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/435 (47%), Positives = 285/435 (65%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAK GE+  +  LF    EK+ V WN +I GY Q G   +AL LF  ML   ++P
Sbjct: 347 ALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQP 406

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            EVT  +VL A   + ALE GR IHS    +   K +V V  +LI+MY+KCG + DARL 
Sbjct: 407 TEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV-VANSLIDMYAKCGRIDDARLT 465

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD+++ +D V WN++I GY++HG G +AL LF+ M +   KP+ +TF+G+LSAC++AGL+
Sbjct: 466 FDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLL 525

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           ++GR  F +M  +Y IEP +EHY CMV LL R+GQ +EA KL+ ++  +P  ++W  LLG
Sbjct: 526 DKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLG 585

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC +H N+ LG+  A+ ++     +  T+VLLSN+YA    WD VA VR  MK+K V+KE
Sbjct: 586 ACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKE 645

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S +E    VH F  GD  HP  K I+ MLE +    +  GYVP   +VL D+ + +K
Sbjct: 646 PGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEK 705

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L +HSE+LA+AFGLI    G SI+I+KNLR+C DCHAV KL+SK   R+I++RD NR
Sbjct: 706 ERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINR 765

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G CSCGDYW
Sbjct: 766 FHHFRQGVCSCGDYW 780



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 167/312 (53%), Gaps = 14/312 (4%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R L     +L  Y K GE+A A+  F++M + D++ W++MI  YAQ   + EAL LF RM
Sbjct: 238 RDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRM 297

Query: 99  LAEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
               V  PN  T  +VL AC  +  L  G  IHS +     +  NV V  AL+++Y+KCG
Sbjct: 298 RQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV-GLDSNVFVSNALMDVYAKCG 356

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++++  +F    +K+ V WN++IVGY   G G+ AL LF+ M  + ++P+++T+  +L 
Sbjct: 357 EIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLR 416

Query: 218 ACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           A A    +  GR+  + T+K  Y  +  V +   ++++ ++ G++++A +L  D   + D
Sbjct: 417 ASASLVALEPGRQIHSLTIKTMYNKDSVVAN--SLIDMYAKCGRIDDA-RLTFDKMDKQD 473

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG----TYVLLSNIYAAIGNWD-GVA 331
            V W  L+    +HG   LG +          +NS     T+V + +  +  G  D G A
Sbjct: 474 EVSWNALICGYSIHG---LGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRA 530

Query: 332 RVRTLMKEKGVQ 343
             ++++++ G++
Sbjct: 531 HFKSMLQDYGIE 542



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 1/154 (0%)

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
           TM  +  V   +++  YAK G +  AR+ FD M+++D V WN +I GY+ HGL  EAL L
Sbjct: 437 TMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNL 496

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F  M     +PN++T V VLSAC   G L+ GR     +     I+  ++  T ++ +  
Sbjct: 497 FDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLG 556

Query: 155 KCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
           + G   +A +L+ +      V+VW +++    +H
Sbjct: 557 RSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIH 590



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 148/341 (43%), Gaps = 48/341 (14%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +   +L  Y   G +  A  LFD+M   + V +  +  G+++      A  L  R+  
Sbjct: 38  LFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFR 97

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E  E N+     +L     +   ++   +H+Y+    + + +  VGTALI+ YS CG++ 
Sbjct: 98  EGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGH-QADAFVGTALIDAYSVCGNVD 156

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC- 219
            AR VFD +  KD+V W  M+  YA +   +D+L LF +M  +  +P++ T    L +C 
Sbjct: 157 AARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN 216

Query: 220 ----------------------------------AHAGLVNEGRRFFNTMKDEYAIEPKV 245
                                               +G + E ++FF  M  +  I    
Sbjct: 217 GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIP--- 273

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMK----IEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             +  M++  +++ + +EA +L   M+    + P++  + ++L AC     + LG +I  
Sbjct: 274 --WSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHS 331

Query: 302 YLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
            ++   L +S  +V   L ++YA  G  +   ++ T   EK
Sbjct: 332 CVLKVGL-DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEK 371


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/440 (45%), Positives = 291/440 (66%), Gaps = 10/440 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T Y+K G++ AAR +FD M EK VV WN ++ G+ Q+GLA +A+ +F +M     EP+
Sbjct: 148 LVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPD 207

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T V++LSAC Q GA+  G W+H YI  S  + VNV++GTALIN+YS+CG +  AR VF
Sbjct: 208 SATFVSLLSACAQTGAISLGSWVHQYIV-SEGLDVNVKLGTALINLYSRCGDVGKAREVF 266

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM---CRIRLKPSDITFIGLLSACAHAG 223
           D++ + +V  W +MI  Y  HG+GK A+ LFN+M   C     P+++TF+ +LSACAHAG
Sbjct: 267 DKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGS--IPNNVTFVAVLSACAHAG 324

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV---LW 280
           LV +GR  +  M + Y + P VEH+ C+V++L RAG ++EAY+ +  +    ++    LW
Sbjct: 325 LVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALW 384

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             +LGAC++H N  LG +IA+ LI+    N G +V+LSNIYA  G  D V+ +R  M   
Sbjct: 385 TAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRN 444

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            ++K+ G S IE+ NK + F  GD  H ++ EIY  LE +    K  GY P ++ V+H +
Sbjct: 445 NLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQV 504

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLAVAFGL+ T   ++I +VKNLR+C DCH+ FK IS  + R+I++
Sbjct: 505 EEEEKEFALRYHSEKLAVAFGLLKT-VDSAITVVKNLRICEDCHSAFKYISIVSNRQIIV 563

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD+ RFHHF NG+CSC DYW
Sbjct: 564 RDKLRFHHFQNGSCSCLDYW 583



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 5/253 (1%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           RSL++    L C A+   +A   +LF  +   D   +N +I   ++  L    +  +RRM
Sbjct: 41  RSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRM 98

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L+  V P+  T  +V+ +C  + AL+ G+ +H +   S    ++  V  AL+  YSKCG 
Sbjct: 99  LSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVS-GFGLDTYVQAALVTFYSKCGD 157

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++ AR VFDR+ +K VV WNS++ G+  +G  +DA+++F +M     +P   TF+ LLSA
Sbjct: 158 MEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSA 217

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA  G ++ G      +  E  ++  V+    ++NL SR G V +A ++   MK E +  
Sbjct: 218 CAQTGAISLGSWVHQYIVSE-GLDVNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVA 275

Query: 279 LWGTLLGACRLHG 291
            W  ++ A   HG
Sbjct: 276 AWTAMISAYGTHG 288



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y++ G+V  AR +FD M+E +V  W  MI  Y  HG   +A+ LF +M  +   
Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGS 306

Query: 105 -PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN VT VAVLSAC   G +E GR ++  +  S  +   V+    +++M  + G L +A 
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAY 366

Query: 164 LVFDRV----NDKDVVVWNSMIVGYAMH 187
               ++    N     +W +M+    MH
Sbjct: 367 RFIQQLDATGNATAPALWTAMLGACKMH 394


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/438 (44%), Positives = 287/438 (65%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G++  AR +F  + E+DVV    +I GYAQ GL  EAL LFRR+  E ++
Sbjct: 198 SSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQ 257

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT  +VL+A   + AL+ G+ +H+++  S  +   V +  +LI+MYSKCG+L  AR 
Sbjct: 258 SNYVTYTSVLTALSGLAALDHGKQVHNHLLRS-EVPSYVVLQNSLIDMYSKCGNLTYARR 316

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           +FD ++++ V+ WN+M+VGY+ HG G++ L+LFN M    ++KP  +T + +LS C+H G
Sbjct: 317 IFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGG 376

Query: 224 LVNEGRR-FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           L ++G   F++    + +++P  +HYGC+V++L RAG+VE A++ V  M  EP + +WG 
Sbjct: 377 LEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGC 436

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGAC +H N+ +GE +   L+     N+G YV+LSN+YA+ G W+ V  +R LM +K V
Sbjct: 437 LLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAV 496

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S IEL   +H F A D  HP+ +E+   ++E++   K  GYVP    VLHD+ E
Sbjct: 497 TKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDE 556

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L  HSEKLA+ FGLI+T     I+++KNLR+C DCH   K  SK  GR++ +RD
Sbjct: 557 EQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRD 616

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFH  V G CSCGDYW
Sbjct: 617 KNRFHRIVGGKCSCGDYW 634



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 136/251 (54%), Gaps = 11/251 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +  AR +FD M E++VV W  MI  Y+Q G A++AL LF +ML    E
Sbjct: 97  TRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTE 156

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   VL++C        GR IHS+I    N + +V VG++L++MY+K G + +AR 
Sbjct: 157 PNEFTFATVLTSCIGSSGFVLGRQIHSHIIK-LNYEAHVYVGSSLLDMYAKDGKIHEARG 215

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  + ++DVV   ++I GYA  G  ++AL+LF  + R  ++ + +T+  +L+A +    
Sbjct: 216 IFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAA 275

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           ++ G++  N +     +  +V  Y      ++++ S+ G +  A + + D   E   + W
Sbjct: 276 LDHGKQVHNHL-----LRSEVPSYVVLQNSLIDMYSKCGNLTYARR-IFDTLHERTVISW 329

Query: 281 GTLLGACRLHG 291
             +L     HG
Sbjct: 330 NAMLVGYSKHG 340



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 131/270 (48%), Gaps = 45/270 (16%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            VL+ C +  A+  G+ +H+++  +  +   V + T LI  Y KC SL+DAR VFD + +
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPC-VYLRTRLIVFYVKCDSLRDARHVFDVMPE 121

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++VV W +MI  Y+  G+   AL LF +M R   +P++ TF  +L++C  +     GR+ 
Sbjct: 122 RNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQI 181

Query: 232 F---------------NTMKDEYAIEPKVEH----YGCM-----------VNLLSRAGQV 261
                           +++ D YA + K+      + C+           ++  ++ G  
Sbjct: 182 HSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLD 241

Query: 262 EEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIAL--GEKIAEYLISQNLANSGTYVL 316
           EEA +L   ++   ++ + V + ++L A  L G  AL  G+++  +L+   +    +YV+
Sbjct: 242 EEALELFRRLQREGMQSNYVTYTSVLTA--LSGLAALDHGKQVHNHLLRSEVP---SYVV 296

Query: 317 LSN----IYAAIGNWDGVARVRTLMKEKGV 342
           L N    +Y+  GN     R+   + E+ V
Sbjct: 297 LQNSLIDMYSKCGNLTYARRIFDTLHERTV 326


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 282/441 (63%), Gaps = 2/441 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV    ++  Y + GEV  +  +F+ +E+KD+V W  MI+ YA  GL NEALVLF  M +
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQS 560

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V+P+ V  V++L A G + +L  G+ +H ++   RN  +   + ++L++MYS CGSL 
Sbjct: 561 TDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIR-RNFHMEEAIVSSLVDMYSGCGSLS 619

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A  VF+ V  KD+V+W +MI    MHG GK A+ LF  M +  + P  ++F+ LL AC+
Sbjct: 620 GALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACS 679

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+ LVNEG+ + + M   Y +EP  EHY C+V+LL R+GQ EEAY+ +  M ++P SV+W
Sbjct: 680 HSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVW 739

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            +LLGACR+H N  L    A  L+     N G YVL+SN++A +G W+    VR  + E+
Sbjct: 740 CSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISER 799

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHD 399
           G++K+P CS IE+ N VH F   D  H  ++ I + L EI   L+ E GY   T+ VLHD
Sbjct: 800 GLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHD 859

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + E++K + L  HSE+LA++FGLI+T+PG  ++I KNLRVC DCH   KL+SK   R I+
Sbjct: 860 VSEEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIV 919

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD NRFHHF  G+CSCGD+W
Sbjct: 920 VRDANRFHHFSGGSCSCGDFW 940



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 162/332 (48%), Gaps = 34/332 (10%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +    +L  Y K G V +A  +F +++EKD + WN M+  Y Q+GL  EA+     ML  
Sbjct: 301 IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
             +P+    V++ SA G +G L +G+ +H+Y    R +  + QVG  L++MY KC  ++ 
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQR-LDSDTQVGNTLMDMYMKCRYIEY 419

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA- 220
           +  VFDR+  KD + W ++I  YA      +AL++F E  +  +K   +    +L AC+ 
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSG 479

Query: 221 ---------------HAGLVN------------EGRRFFNTMKDEYAIEPK-VEHYGCMV 252
                            GL++            E    ++++K    +E K +  +  M+
Sbjct: 480 LETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMI 539

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           N  + +G + EA  L  +M+   ++PDSV   ++LGA     ++A G+++  +LI +N  
Sbjct: 540 NCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFH 599

Query: 310 NSGTYV-LLSNIYAAIGNWDGVARVRTLMKEK 340
                V  L ++Y+  G+  G  +V   +K K
Sbjct: 600 MEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK 631



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 8/244 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM---LAE 101
           T +L  Y K G VA AR+LFD M  + V  WN +I  Y   G A EAL ++R M    A 
Sbjct: 99  TKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAAS 158

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V P+  T  +VL A G  G    G  +H  +     +  +  V  ALI MY+KCG L  
Sbjct: 159 GVAPDGCTLASVLKASGVEGDGRCGCEVHG-LAVKHGLDRSTFVANALIAMYAKCGILDS 217

Query: 162 ARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           A  VF+ ++D +DV  WNSMI G   +G    AL LF  M R  L  +  T +G+L  C 
Sbjct: 218 AMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCT 277

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
               +N GR     +    + E  ++    +V + ++ G+V+ A ++  ++  E D + W
Sbjct: 278 ELAQLNLGRELHAALLKSGS-EVNIQCNALLV-MYTKCGRVDSALRVFREID-EKDYISW 334

Query: 281 GTLL 284
            ++L
Sbjct: 335 NSML 338



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 146/321 (45%), Gaps = 36/321 (11%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRR 97
           RS      ++  YAK G + +A  +F+ M + +DV  WN MI G  Q+G+  +AL LFR 
Sbjct: 197 RSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRG 256

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M    +  N  T V VL  C ++  L  GR +H+ +  S + +VN+Q   AL+ MY+KCG
Sbjct: 257 MQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGS-EVNIQC-NALLVMYTKCG 314

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  A  VF  +++KD + WNSM+  Y  +G   +A++  +EM R   +P     + L S
Sbjct: 315 RVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSS 374

Query: 218 ACAHAGLVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLL------- 255
           A  H G +  G+                  NT+ D Y     +E+   + + +       
Sbjct: 375 AVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHIS 434

Query: 256 -----------SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
                      SR  +  E ++      I+ D ++ G++L AC     I L +++  Y I
Sbjct: 435 WTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAI 494

Query: 305 SQNLANSGTYVLLSNIYAAIG 325
              L +      + +IY   G
Sbjct: 495 RNGLLDLVVKNRIIDIYGECG 515



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           + T L+ MY KCG + DARL+FD ++ + V  WN++I  Y   G   +AL ++  M R+ 
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAM-RLS 155

Query: 205 ----LKPSDITFIGLLSACAHAGLVNEGRRF--FNTMKDEYAIEPKVEHYGCMVNLLSRA 258
               + P   T   +L A   +G+  +GR     + +  ++ ++        ++ + ++ 
Sbjct: 156 AASGVAPDGCTLASVLKA---SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKC 212

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           G ++ A ++   M    D   W +++  C  +G
Sbjct: 213 GILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 304/479 (63%), Gaps = 19/479 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V + +  D ++  +L+DLYA+ G +  A + F  +P +S  S  +ML  + + G V  AR
Sbjct: 395 VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKAR 454

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             F+ + EKD+V WN M++ Y +H L NE+  +F +M +  V+P++ T +++LS+C ++G
Sbjct: 455 DFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVG 514

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G W++ YIE +  I ++  +GTALI+MY KCG ++ A  +F ++ +K+V VW +M+
Sbjct: 515 ALNHGIWVNVYIEKNE-IGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMM 573

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             YAM G   +A+ L+ EM    +KP  +TFI LL+AC+H GLV+EG ++FN ++  Y I
Sbjct: 574 AAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNI 633

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P + HYGCMV+LL R G +EE  K +  M IEPD  +W +L+ ACR H N+ L E+  +
Sbjct: 634 IPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFK 693

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            LI  +  N+G +VLLSNIYA  G WD V++VRT + E GV K+PG + IE +  VHEF+
Sbjct: 694 QLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFV 753

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           A +L    S +I  ML++I   L          +V  ++ +   Q     HSE+LAVAFG
Sbjct: 754 ASNL---VSADILCMLQDIERRL----------LVKQELSDTTSQ-----HSERLAVAFG 795

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LI+ Q  + I++V ++R+C DCH+V KLIS+   R+I++RD  RFH F +G CSC DYW
Sbjct: 796 LINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 166/327 (50%), Gaps = 44/327 (13%)

Query: 4   FSLDKDLYVSTSL----VDLYARGGDVLSAEKLFATMPQR--SLVSLTTMLTCYAKQGEV 57
           + +D  L++  SL    VD+Y++ G +  A  L +   +    +V  TT+++ Y K  ++
Sbjct: 259 YIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKI 318

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             AR LFD M E+ +V W  M+ GY Q G   E+L LF++M  E V P+EV  V VLSAC
Sbjct: 319 DKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSAC 378

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD---------------- 161
             +   + GR +H++I  +  + V+  +G AL+++Y+KCG L +                
Sbjct: 379 VHLEDFDLGRSVHAFIV-TYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASW 437

Query: 162 ---------------ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
                          AR  F+++ +KD+V WN+M+  Y  H    ++ ++F +M    +K
Sbjct: 438 NSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           P   T I LLS+CA  G +N G  + N    K+E  I+  +     ++++  + G VE A
Sbjct: 498 PDKTTLISLLSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLG--TALIDMYGKCGCVEMA 554

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHG 291
           Y++   + IE +  +W  ++ A  + G
Sbjct: 555 YEIFTQI-IEKNVFVWTAMMAAYAMEG 580



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 138/284 (48%), Gaps = 55/284 (19%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y+K G++     LF+ M  +DV+ WN MI  Y   G+  EAL LF  ML   V P+E+T 
Sbjct: 178 YSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITM 237

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD--------- 161
           V+++S C ++  LE G+ +H YI +++ + +   +   L++MYSKCG + +         
Sbjct: 238 VSLVSTCAKLKDLEMGKRLHLYIVDNK-LWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCD 296

Query: 162 ------------------------ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
                                   AR +FD++N++ +V W +M+ GY   G+  ++L+LF
Sbjct: 297 ESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELF 356

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV----- 252
            +M    + P ++  + +LSAC H    + GR          ++   +  YG +V     
Sbjct: 357 QQMRFENVIPDEVALVTVLSACVHLEDFDLGR----------SVHAFIVTYGMLVDGFLG 406

Query: 253 ----NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL-GACRLHG 291
               +L ++ G+++EA +    +  +  +  W ++L G CR  G
Sbjct: 407 NALLDLYAKCGKLDEALRTFEQLPCK-SAASWNSMLDGFCRSGG 449



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 11/223 (4%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E + + WN +++   + G   E L  +  M+ + V  +  T   ++ AC +   ++ G  
Sbjct: 95  EPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSE 154

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H  I        N  +   L+ +YSKCG LK+   +F+++  +DV+ WN+MI  Y + G
Sbjct: 155 VHGRILKC-GFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKG 213

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             ++AL LF+EM    + P +IT + L+S CA    +  G+R        Y ++ K+   
Sbjct: 214 MYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRL-----HLYIVDNKLWIR 268

Query: 249 G----CMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGA 286
           G    C+V++ S+ G+++EA+ L+    + E D VLW TL+  
Sbjct: 269 GSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 306/469 (65%), Gaps = 2/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+D+Y +     +A ++F  M  +++V+  +++  Y + GEV AA   F+ M EK+
Sbjct: 374 ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKN 433

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +V WN +I G  Q  L  EA+ +F  M + E V  + VT +++ SACG +GAL+  +WI+
Sbjct: 434 IVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIY 493

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            YIE +  I+++V++GT L++M+S+CG  + A  +F+ + ++DV  W + I   AM G  
Sbjct: 494 YYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNA 552

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           + A++LF++M    LKP  + F+G L+AC+H GLV +G+  F +M   + + P+  HYGC
Sbjct: 553 ERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGC 612

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           MV+LL RAG +EEA +L+ DM +EP+ V+W +LL ACR+ GN+ +    AE +       
Sbjct: 613 MVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER 672

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
           +G+YVLLSN+YA+ G W+ +A+VR  MKEKG++K PG SSI++  K HEF +GD  HP+ 
Sbjct: 673 TGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEM 732

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
             I  ML+E++      G+VP    VL D+ EK+K   L  HSEKLA+A+GLIS+  GT+
Sbjct: 733 PNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTT 792

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           I+IVKNLRVC DCH+  K  SK   R+I++RD NRFH+   G CSCGD+
Sbjct: 793 IRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 117/194 (60%), Gaps = 11/194 (5%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A+ LF    Q SLV        YA+ GE+ +AR +FD+M E++VV W  MI GYA+   A
Sbjct: 166 AKDLFV---QNSLVHF------YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216

Query: 89  NEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
            +A+ LF RM+  E+V PN VT V V+SAC ++  LE+G  ++++I NS  I+VN  + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVS 275

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL++MY KC ++  A+ +FD     ++ + N+M   Y   G  ++AL +FN M    ++P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335

Query: 208 SDITFIGLLSACAH 221
             I+ +  +S+C+ 
Sbjct: 336 DRISMLSAISSCSQ 349



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 48/309 (15%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N +I GYA  GL NEA++LF RM+   + P++ T    LSAC +  A  +G  IH  I 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                K ++ V  +L++ Y++CG L  AR VFD +++++VV W SMI GYA   F KDA+
Sbjct: 162 KMGYAK-DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220

Query: 195 QLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK----------------- 236
            LF  M R   + P+ +T + ++SACA    +  G + +  ++                 
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDM 280

Query: 237 --------------DEYAIEPKVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVL 279
                         DEY     ++    M +   R G   EA   + L+MD  + PD + 
Sbjct: 281 YMKCNAIDVAKRLFDEYGAS-NLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQ------NLANSGTYVLLSNIYAAIGNWDGVARV 333
             + + +C    NI  G+    Y++        N+ N+     L ++Y      D   R+
Sbjct: 340 MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA-----LIDMYMKCHRQDTAFRI 394

Query: 334 RTLMKEKGV 342
              M  K V
Sbjct: 395 FDRMSNKTV 403


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/476 (42%), Positives = 302/476 (63%), Gaps = 4/476 (0%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
           S+   L V  SL DL  R G  L A  L  +     L +  ++L+ YAK G +  A +LF
Sbjct: 308 SVASALRVCASLADL--RMGTQLHA-LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLF 364

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D++  KD + +  ++ GY Q+G A EA ++F++M A  V+P+  T V+++ AC  + AL+
Sbjct: 365 DEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQ 424

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR  H  +   R + +   +  +LI+MY+KCG +  +R VFD++  +D+V WN+MI GY
Sbjct: 425 HGRCSHGSVI-IRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGY 483

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            +HG GK+A  LF  M     +P D+TFI L++AC+H+GLV EG+ +F+TM  +Y I P+
Sbjct: 484 GIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPR 543

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +EHY CMV+LL+R G ++EAY+ +  M ++ D  +WG LLGACR+H NI LG++++  + 
Sbjct: 544 MEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQ 603

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
                 +G +VLLSNI++A G +D  A VR + K KG +K PGCS IE++  +H F+ GD
Sbjct: 604 KLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGD 663

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP S +IY  L+ I   +K  GY   T  VL D+ E++K+ +L  HSEKLA+AFG++S
Sbjct: 664 QSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLS 723

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
                +I + KNLRVC DCH   K ++    R I++RD NRFHHF NG CSCGD+W
Sbjct: 724 LNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 156/371 (42%), Gaps = 89/371 (23%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  DL+VST+L+DLY R      A  +FA MP R                          
Sbjct: 130 LHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR-------------------------- 163

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALE 124
                DVV WN M+ GYA HG+ + A+     M     + PN  T V++L    Q GAL 
Sbjct: 164 -----DVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 125 SGRWIHSYIENSR--NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            G  +H+Y   +     +  V +GTAL++MY+KC  L  A  VF  +  ++ V W+++I 
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278

Query: 183 GYAMHGFGKDALQLFNEM----------------CRIRLKPSDITF-------------- 212
           G+ +     +A  LF +M                 R+    +D+                
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIH 338

Query: 213 ------IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
                   LLS  A AGL+NE    F    DE AI+  +  YG +++   + G+ EEA+ 
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLF----DEIAIKDTIS-YGALLSGYVQNGKAEEAFL 393

Query: 267 LVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYL-ISQNLANSGTYVLL 317
           +   M+   ++PD     +L+ AC       HG  + G  I   L +  ++ NS     L
Sbjct: 394 VFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNS-----L 448

Query: 318 SNIYAAIGNWD 328
            ++YA  G  D
Sbjct: 449 IDMYAKCGRID 459



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 5/235 (2%)

Query: 54  QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113
           +G++A AR +FD +   D   +N +I  Y+  G  + A+ L+R ML  +V PN+ T   V
Sbjct: 46  RGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFV 105

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC  +  L +GR IH++   +  +  ++ V TALI++Y +C     A  VF ++  +D
Sbjct: 106 LKACSALADLCAGRTIHAH-AAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRD 164

Query: 174 VVVWNSMIVGYAMHGFGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           VV WN+M+ GYA HG    A+  L +   R  L+P+  T + LL   A  G + +G    
Sbjct: 165 VVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVH 224

Query: 233 NTMKDEY--AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
                 Y    E +V     ++++ ++   +  A ++   M +  + V W  L+G
Sbjct: 225 AYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVTWSALIG 278


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 283/437 (64%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y     V+ AR LF+ +  KDVV WN +I GY + G A +AL LF RM+    
Sbjct: 266 MNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGA 325

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+EVT ++VL+AC QI AL  G  + SY+   R   VNV VGTALI MY+ CGSL  A 
Sbjct: 326 VPDEVTVISVLAACNQISALRLGATVQSYVVK-RGYVVNVVVGTALIGMYANCGSLVCAC 384

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + +K++     M+ G+ +HG G++A+ +F EM    + P +  F  +LSAC+H+G
Sbjct: 385 RVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSG 444

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+EG+  F  M  +Y++EP+  HY C+V+LL RAG ++EAY ++ +MK++P+  +W  L
Sbjct: 445 LVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTAL 504

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACRLH N+ L    A+ L   N      YV LSNIYAA   W+ V  VR L+ ++ ++
Sbjct: 505 LSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLR 564

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K P  S +EL+  VH+F  GD  H +S +IY  L+++N  LK  GY P T +VL+D+ E+
Sbjct: 565 KPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEE 624

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  L  HSE+LA+AF LI+T PGT+I+I KNLRVC DCH V K+ISK T R+I+MRD 
Sbjct: 625 IKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDI 684

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCG YW
Sbjct: 685 CRFHHFRDGLCSCGGYW 701



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 41/358 (11%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R+    T +  CYA  G +  A+ +FD +  K+   WN MI GYA +   + AL L+ +
Sbjct: 55  RRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLK 114

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML    +P+  T   VL ACG +   E GR +H+ +     ++ +V VG ++++MY K G
Sbjct: 115 MLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVG-GLEEDVYVGNSILSMYFKFG 173

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++ AR+VFDR+  +D+  WN+M+ G+  +G  + A ++F +M R        T + LLS
Sbjct: 174 DVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLS 233

Query: 218 ACA-----------HAGLVNEGRR-------FFNTMKDEYAIEPKVE------------- 246
           AC            H  +V  G           N++ D Y     V              
Sbjct: 234 ACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKD 293

Query: 247 --HYGCMVNLLSRAGQVEEAYKLVMDMKI---EPDSVLWGTLLGACRLHGNIALGEKIAE 301
              +  +++   + G   +A +L   M +    PD V   ++L AC     + LG  +  
Sbjct: 294 VVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQS 353

Query: 302 YLISQN-LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           Y++ +  + N      L  +YA  G+     RV   M EK +   P C+ +     +H
Sbjct: 354 YVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNL---PACTVMVTGFGIH 408



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +L     +H+++     ++ N  + T L   Y+ CG +  A+ +FD++  K+  +WNSMI
Sbjct: 37  SLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMI 96

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA +     AL L+ +M     KP + T+  +L AC    L   GR+  + +     +
Sbjct: 97  RGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRK-VHALVVVGGL 155

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           E  V     ++++  + G VE A ++V D  +  D   W T++
Sbjct: 156 EEDVYVGNSILSMYFKFGDVEAA-RVVFDRMLVRDLTSWNTMM 197



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ V T+L+ +YA  G ++ A ++F  MP+++L + T M+T                   
Sbjct: 363 NVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVT------------------- 403

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                       G+  HG   EA+ +F  ML + V P+E    AVLSAC   G ++ G+ 
Sbjct: 404 ------------GFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKE 451

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
           I   +    +++      + L+++  + G L +A  V + +  K +  VW +++    +H
Sbjct: 452 IFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLH 511


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 283/445 (63%), Gaps = 10/445 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ---------HGLANEALVLF 95
             +L  +A+ G +A+ R +FD +   D+  WN ++  YA+            A+  L LF
Sbjct: 517 AALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELF 576

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            RML+  +EPNE+T VAV+ ACG++GA+  G W H+Y    R + VN  V TAL+ MY+ 
Sbjct: 577 VRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVK-RRLAVNCIVATALVEMYAG 635

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L  A  VF  V+D+D   +N+M+ G A+HG G+ AL L + M    +    +T + +
Sbjct: 636 CGRLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSV 695

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + ACAHAGLV+EG  +F+ M+ E+ IEP++EHYGCM+++LSRAGQ+  A KL+ +M I P
Sbjct: 696 MCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVP 755

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           ++ ++ +L+ AC +HG + LGEK+   L+     +SG +VL+SN YA    W+   + R 
Sbjct: 756 NAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARK 815

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            MK  G+ K PG S ++++  +HEFL GD  HP SKEIY M+EEI   L   G    T  
Sbjct: 816 EMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSS 875

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            L D+ E+ K ++L  HSE+LA+AF LI++ PG  I+I+KNLRVC DCH   KL+S+  G
Sbjct: 876 ALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYG 935

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I+MRDR RFHHF +G CSCGD+W
Sbjct: 936 REIVMRDRTRFHHFRDGVCSCGDFW 960



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 34/210 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  L  +  V+T+LV++YA  G +  AE++FA +  R                     
Sbjct: 614 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAVSDR--------------------- 652

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                     D  C+N M+ G A HG    AL L  RM    V  + VT ++V+ AC   
Sbjct: 653 ----------DTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHA 702

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +E    I+  ++    +I+M S+ G L +A +L+ + +   +  ++ S
Sbjct: 703 GLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNAAIYRS 762

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +I    +HG  +   ++  E+  +RL+P D
Sbjct: 763 LIRACGIHGKLELGEKMIAEL--MRLEPDD 790



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM--------HGFGKDA-LQ 195
           +G AL+ ++++CG +   R VFDR+   D+  WN+++  YA              DA L+
Sbjct: 515 LGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILE 574

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           LF  M  + ++P++IT + ++ AC   G V+ G
Sbjct: 575 LFVRMLSLAIEPNEITLVAVIGACGELGAVSHG 607


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/436 (44%), Positives = 284/436 (65%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T+L+ YAK G +  A   FD M  KD V ++ ++ G  Q+G A  AL +FR M    ++
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID 410

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T + VL AC  + AL+ G   H Y+   R    +  +  ALI+MYSKCG +  AR 
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+R++  D+V WN+MI+GY +HG G +AL LF+++  + LKP DITFI LLS+C+H+GL
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EGR +F+ M  +++I P++EH  CMV++L RAG ++EA+  + +M  EPD  +W  LL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H NI LGE++++ + S    ++G +VLLSNIY+A G WD  A +R   K+ G++K
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCS IE++  VH F+ GD  H +  +I   LEE+   +K  GY  +   V  D+ E++
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEE 709

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+AFG+++ + G  I + KNLRVC DCHA  K ++  T R+I +RD N
Sbjct: 710 KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDAN 769

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NGTC+CGD+W
Sbjct: 770 RFHHFKNGTCNCGDFW 785



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 149/297 (50%), Gaps = 35/297 (11%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F L+ D++V T+LVD YA+ G ++ A++LF++M  R                        
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR------------------------ 173

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                  DVV WN MI G + +GL ++A+ L  +M  E + PN  T V VL   G+  AL
Sbjct: 174 -------DVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKAL 226

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
             G+ +H Y    R+    V VGT L++MY+KC  L  AR +FD +  ++ V W++MI G
Sbjct: 227 GHGKALHGYCVR-RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285

Query: 184 YAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           Y      K+AL+LF++M  +  + P+ +T   +L ACA    ++ GR+  +    +    
Sbjct: 286 YVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRK-LHCYIIKLGXV 344

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
             +     ++++ ++ G +++A +   D     DSV +  ++  C  +GN A+   I
Sbjct: 345 LDILLGNTLLSMYAKCGVIDDAIRF-FDXMNPKDSVSFSAIVSGCVQNGNAAVALSI 400



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 154/329 (46%), Gaps = 44/329 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y    +V  AR LFD++    V+ WN +I  YA +G  + A+ L+  ML   V PN+ T 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL AC  + A+E G  IHS+ +    ++ +V V TAL++ Y+KCG L +A+ +F  ++
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG-- 228
            +DVV WN+MI G +++G   DA+QL  +M    + P+  T +G+L     A  +  G  
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKA 231

Query: 229 ------RRFFNT-------MKDEYA----------------IEPKVEHYGCMVNLLSRAG 259
                 RR F+        + D YA                +  +V  +  M+     + 
Sbjct: 232 LHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVXSD 290

Query: 260 QVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            ++EA +L   M     ++P  V  G++L AC    +++ G K+  Y+I          +
Sbjct: 291 CMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLD---I 347

Query: 316 LLSN----IYAAIGNWDGVARVRTLMKEK 340
           LL N    +YA  G  D   R    M  K
Sbjct: 348 LLGNTLLSMYAKCGVIDDAIRFFDXMNPK 376



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 14/253 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKV 103
           T +L  YAK   +  AR +FD M  ++ V W+ MI GY       EAL LF +M L + +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAM 308

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P  VT  +VL AC ++  L  GR +H YI     + +++ +G  L++MY+KCG + DA 
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXV-LDILLGNTLLSMYAKCGVIDDAI 367

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA- 222
             FD +N KD V +++++ G   +G    AL +F  M    + P   T +G+L AC+H  
Sbjct: 368 RFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLA 427

Query: 223 ----GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
               G  + G         +  I         ++++ S+ G++  A ++   M    D V
Sbjct: 428 ALQHGFCSHGYLIVRGFATDTLI------CNALIDMYSKCGKISFAREVFNRMD-RHDIV 480

Query: 279 LWGTLLGACRLHG 291
            W  ++    +HG
Sbjct: 481 SWNAMIIGYGIHG 493



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 5/180 (2%)

Query: 113 VLSACGQIGALESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           +L AC Q  +L   + IH  +++N+ N   +  V   L  +Y  C  +  AR +FD + +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSN--ADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
             V++WN +I  YA +G    A+ L++ M  + ++P+  T+  +L AC+    + +G   
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  K  + +E  V     +V+  ++ G + EA +L   M    D V W  ++  C L+G
Sbjct: 132 HSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/437 (42%), Positives = 286/437 (65%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y K G + AA  LF++M  + +V WN M+  +  +G A + + LF  M    +
Sbjct: 259 VNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGI 318

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P++ T VA+L AC   G       IH+YI        ++ + TAL+N+Y+K G L  + 
Sbjct: 319 NPDQATMVALLRACTDTGLGRQAESIHAYIHRC-GFNADIIIATALLNLYAKLGRLNASE 377

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +F+ + D+D + W +M+ GYA+H  G++A++LF+ M +  ++   +TF  LLSAC+H+G
Sbjct: 378 DIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSG 437

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F  M + Y +EP+++HY CMV+LL R+G++E+AY+L+  M +EP S +WG L
Sbjct: 438 LVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGAL 497

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR++GN+ LG+++AE L+S + ++   Y++LSNIY+A G W   ++VR LMKE+ + 
Sbjct: 498 LGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLT 557

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           + PGCS IE  NK+H F+ GD  HP+S EI+  LEE+   ++  G  P+T+ VLHDI E+
Sbjct: 558 RNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEE 617

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K + +  HSEKLA+AFGL+ T  G  + I KNLR+C DCH+  K  S    R I++RD 
Sbjct: 618 VKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDS 677

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSC DYW
Sbjct: 678 KRFHHFADGLCSCRDYW 694



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 4/246 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP 105
           +++ Y K G    A+ LFD+M  KD+V WN ++ G +  G     L  F RM  E   +P
Sbjct: 160 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 219

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NEVT ++V+SAC  +GAL+ G+ +H  +     +    +V  +LINMY K G L  A  +
Sbjct: 220 NEVTLLSVVSACADMGALDEGKSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQL 278

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ +  + +V WNSM+V +  +G+ +  + LFN M R  + P   T + LL AC   GL 
Sbjct: 279 FEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLG 338

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +       +         +     ++NL ++ G++  +  +  ++K + D + W  +L 
Sbjct: 339 RQAESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLA 396

Query: 286 ACRLHG 291
              +H 
Sbjct: 397 GYAVHA 402



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 10/202 (4%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++  T +L  YAK G + A+  +F++++++D + W  M+ GYA H    EA+ LF  M+ 
Sbjct: 357 IIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVK 416

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E VE + VT   +LSAC   G +E G+     +     ++  +   + ++++  + G L+
Sbjct: 417 EGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLE 476

Query: 161 DA-RLVFDRVNDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSD-ITFIGL 215
           DA  L+     +    VW +++    ++G    GK+  +       + L PSD   +I L
Sbjct: 477 DAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQL-----LSLDPSDHRNYIML 531

Query: 216 LSACAHAGLVNEGRRFFNTMKD 237
            +  + AGL  +  +    MK+
Sbjct: 532 SNIYSAAGLWRDASKVRALMKE 553



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 93/178 (52%), Gaps = 13/178 (7%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V  +S+C  +    +   IH+ +  S N      +G  L++MY K G  +DA+ +FD + 
Sbjct: 126 VFAISSCTSVSYCSA---IHARVIKSLNYSDGF-IGDRLVSMYFKLGYDEDAQRLFDEMP 181

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL----KPSDITFIGLLSACAHAGLVN 226
           +KD+V WNS++ G +  G+    L  F   CR+R     +P+++T + ++SACA  G ++
Sbjct: 182 NKDLVSWNSLMSGLSGRGYLGACLNAF---CRMRTESGRQPNEVTLLSVVSACADMGALD 238

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           EG+     +  +  +  K +    ++N+  + G ++ A +L  +M +    V W +++
Sbjct: 239 EGKSLHGVVV-KLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMV 294


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/445 (43%), Positives = 282/445 (63%), Gaps = 10/445 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ---------HGLANEALVLF 95
             +L  +A+ G +A+ R +FD +   D+  WN ++  YA+            A+  L LF
Sbjct: 162 AALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELF 221

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            RML+  +EPNE+T VAV+ ACG++GA+  G W H+Y    R + VN  V TAL+ MY+ 
Sbjct: 222 VRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVK-RRLAVNCIVATALVEMYAG 280

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L  A  VF   +D+D   +N+M+ G A+HG G+ AL L + M    +    +T + +
Sbjct: 281 CGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSV 340

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + ACAHAGLV+EG  +F+ M+ E+ IEP++EHYGCM+++LSRAG++  A KL+ +M I P
Sbjct: 341 MCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVP 400

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           ++ ++ +L+ AC +HG + LGEK+   L+     +SG +VL+SN YA    W+   + R 
Sbjct: 401 NAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARK 460

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            MK  G+ K PG S ++++  +HEFL GD  HP SKEIY M+EEI   L   G    T  
Sbjct: 461 EMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSS 520

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            L D+ E+ K ++L  HSE+LA+AF LI++ PG  I+I+KNLRVC DCH   KL+S+  G
Sbjct: 521 ALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYG 580

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I+MRDR RFHHF +G CSCGD+W
Sbjct: 581 REIVMRDRTRFHHFRDGVCSCGDFW 605



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 34/210 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  L  +  V+T+LV++YA  G +  AE++FA    R                     
Sbjct: 259 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDR--------------------- 297

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                     D  C+N M+ G A HG    AL L  RM    V  + VT ++V+ AC   
Sbjct: 298 ----------DTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHA 347

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +E    I+  ++    +I+M S+ G L +A +L+ + +   +  ++ S
Sbjct: 348 GLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRS 407

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +I    +HG  +   ++  E+  +RL+P D
Sbjct: 408 LIRACGIHGKLELGEKMIAEL--MRLEPDD 435



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY--------AMHGFGKDA-LQ 195
           +G AL+ ++++CG +   R VFDR+   D+  WN+++  Y        A      DA L+
Sbjct: 160 LGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILE 219

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           LF  M  + ++P++IT + ++ AC   G V+ G
Sbjct: 220 LFVRMLSLAIEPNEITLVAVIGACGELGAVSHG 252


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/445 (45%), Positives = 284/445 (63%), Gaps = 8/445 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +  L     ++  Y+  G +  AR LFD+   +D+V +N MI GYA+      AL LF  
Sbjct: 67  ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLF-- 124

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKC 156
              E    +EVT VAVLSAC ++GA + G R  H YIEN      N  +  A+++MY+KC
Sbjct: 125 --GEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGV-FNQNTILTAAVMDMYAKC 181

Query: 157 GSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           GS+  A  +F RV  N K   V+NSMI G A HG G+ A+ +F E+    LKP ++TF+G
Sbjct: 182 GSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 241

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +L AC H+GL+ EG++ F +M + Y I+P++EHYGCMV+LL R G +EEAY LV  M  E
Sbjct: 242 VLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE 301

Query: 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
            +SV+W  LL ACR HGN+ +GE   + L+     +   YVLLSNI A    W+   +VR
Sbjct: 302 ANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVR 361

Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQ 394
            +M++ G++K PG S IEL   +H F+A D  HP+ KEI +ML+++   LK+ GYVP T 
Sbjct: 362 KVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTA 421

Query: 395 IVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFT 454
            V+ DI E++K++ +  HSEKLA+AFGL+   P  +I+IVKNLR+C DCH  FKL+S+  
Sbjct: 422 QVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIY 481

Query: 455 GRKIMMRDRNRFHHFVNGTCSCGDY 479
           GR+I +RD  RFHHF NG+CSC D+
Sbjct: 482 GREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 133/268 (49%), Gaps = 42/268 (15%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNEVTAVAVLSACGQIGALESGRWIHSYI 133
           WN MI GY++     EA+VL+  M+A+ +  PN  T   +L++C ++ +LE G  +HS+I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                 + ++ V  ALI++YS  G+L  AR +FD    +D+V +N+MI GYA     + A
Sbjct: 62  IK-HGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN----------------TMKD 237
           L LF EM        ++T + +LSACA  G  + G+R ++                 + D
Sbjct: 121 LCLFGEM----QNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176

Query: 238 EYA----IEPKVE-------------HYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDS 277
            YA    I+  +E              +  M+  L++ G  E A   ++ ++   ++PD 
Sbjct: 177 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 236

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLIS 305
           V +  +L AC   G I  G+K+ E + +
Sbjct: 237 VTFVGVLCACGHSGLIEEGKKLFESMFN 264


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 284/436 (65%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T+L+ YAK G +  A   FD+M  KD V ++ ++ G  Q+G A  AL +FR M    ++
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID 410

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T + VL AC  + AL+ G   H Y+   R    +  +  ALI+MYSKCG +  AR 
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+R++  D+V WN+MI+GY +HG G +AL LF+++  + LKP DITFI LLS+C+H+GL
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EGR +F+ M  +++I P++EH  CMV++L RAG ++EA+  + +M  EPD  +W  LL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H NI LGE++++ + S    ++G +VLLSNIY+A G WD  A +R   K+ G++K
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PGCS IE++  VH F+ GD  H +  +I   LEE+   +K  GY  +   V  D+ E++
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEE 709

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+AFG+++ + G  I + KNLRVC DCH   K ++  T R+I +RD N
Sbjct: 710 KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDAN 769

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NGTC+CGD+W
Sbjct: 770 RFHHFKNGTCNCGDFW 785



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 151/297 (50%), Gaps = 35/297 (11%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F L+ D++V T+LVD YA+ G ++ A++LF++M  R                        
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR------------------------ 173

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
                  DVV WN MI G + +GL ++A+ L  +M  E + PN  T V VL   G+  AL
Sbjct: 174 -------DVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKAL 226

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
             G+ +H Y    R+    V VGT L++MY+KC  L  AR +FD +  ++ V W++MI G
Sbjct: 227 GHGKALHGYCVR-RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGG 285

Query: 184 YAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           Y      K+AL+LF++M  +  + P+ +T   +L ACA    ++ GR+    +    ++ 
Sbjct: 286 YVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSV- 344

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
             +     ++++ ++ G +++A +   +M    DSV +  ++  C  +GN A+   I
Sbjct: 345 LDILLGNTLLSMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGNAAVALSI 400



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 155/329 (47%), Gaps = 44/329 (13%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y    +V  AR LFD++    V+ WN +I  YA +G  + A+ L+  ML   V PN+ T 
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL AC  + A+E G  IHS+ +    ++ +V V TAL++ Y+KCG L +A+ +F  ++
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS 171

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG-- 228
            +DVV WN+MI G +++G   DA+QL  +M    + P+  T +G+L     A  +  G  
Sbjct: 172 HRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKA 231

Query: 229 ------RRFFNT-------MKDEYA----------------IEPKVEHYGCMVNLLSRAG 259
                 RR F+        + D YA                +  +V  +  M+     + 
Sbjct: 232 LHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVASD 290

Query: 260 QVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            ++EA +L   M     ++P  V  G++L AC    +++ G K+  Y+I      S   +
Sbjct: 291 CMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK---LGSVLDI 347

Query: 316 LLSN----IYAAIGNWDGVARVRTLMKEK 340
           LL N    +YA  G  D   R    M  K
Sbjct: 348 LLGNTLLSMYAKCGVIDDAIRFFDEMNPK 376



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 126/253 (49%), Gaps = 14/253 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKV 103
           T +L  YAK   +  AR +FD M  ++ V W+ MI GY       EAL LF +M L + +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAM 308

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P  VT  +VL AC ++  L  GR +H YI    ++ +++ +G  L++MY+KCG + DA 
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSV-LDILLGNTLLSMYAKCGVIDDAI 367

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA- 222
             FD +N KD V +++++ G   +G    AL +F  M    + P   T +G+L AC+H  
Sbjct: 368 RFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLA 427

Query: 223 ----GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
               G  + G         +  I         ++++ S+ G++  A ++   M    D V
Sbjct: 428 ALQHGFCSHGYLIVRGFATDTLI------CNALIDMYSKCGKISFAREVFNRMD-RHDIV 480

Query: 279 LWGTLLGACRLHG 291
            W  ++    +HG
Sbjct: 481 SWNAMIIGYGIHG 493



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 5/180 (2%)

Query: 113 VLSACGQIGALESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           +L AC Q  +L   + IH  +++N+ N   +  V   L  +Y  C  +  AR +FD + +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSN--ADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
             V++WN +I  YA +G    A+ L++ M  + ++P+  T+  +L AC+    + +G   
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  K  + +E  V     +V+  ++ G + EA +L   M    D V W  ++  C L+G
Sbjct: 132 HSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLYG 189


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/443 (44%), Positives = 301/443 (67%), Gaps = 8/443 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            +++  YA  G +  AR +FD M E ++VV WNVMID YA+ G  +  L++F  M+ +  
Sbjct: 124 NSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMM-KVY 182

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYI--ENSRNIKVNVQVGTALINMYSKCGSLKD 161
           EP+  T  +V+ ACG +G+L  G W+H+++  +  +N+  +V V T L++MY KCGSL+ 
Sbjct: 183 EPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEI 242

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACA 220
           A+ VF+ ++ +DV  WNS+I+G+A+HG  K AL  F  M ++ ++ P+ ITF+G+LSAC 
Sbjct: 243 AKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACN 302

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+G+V+EG  +F  M  EY +EP + HYGC+V+L +RAG ++EA  +V +M I+PD+V+W
Sbjct: 303 HSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIW 362

Query: 281 GTLLGAC-RLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
            +LL AC + H ++ L E++A+ +   N     G YVLLS +YA+   W+ V  +R LM 
Sbjct: 363 RSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMN 422

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVL 397
           +KGV K+PGCS IE++   HEF AGD  HP+SK+IY  + EI   L++ GY+P  +   L
Sbjct: 423 DKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPL 482

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
            D   + KQN++ +HSE+LA+AFGL++++P   I++ KNLRVC DCH V KLIS+    +
Sbjct: 483 IDEINEGKQNTMRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVE 542

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RDR RFHHF +G+CSC DYW
Sbjct: 543 IIVRDRVRFHHFKDGSCSCMDYW 565



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 127/250 (50%), Gaps = 12/250 (4%)

Query: 75  WNVMIDGYAQHGLANE-ALVLFRRMLAEK---VEPNEVTAVAVLSACGQIGALESGRWIH 130
           WN++I  Y++  L  + A++L++ ++ E+   + P++ T   VL AC  + +L  G+ +H
Sbjct: 49  WNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQVH 108

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVVWNSMIVGYAMHGF 189
           +++      +++  +  +LI+ Y+ CG L+ AR VFDR+ + ++VV WN MI  YA  G 
Sbjct: 109 AHVLK-LGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGD 167

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR--RFFNTMKDEYAIEPKVEH 247
               L +F EM ++  +P   T   ++ AC   G ++ G     F   K +  +   V  
Sbjct: 168 YDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLV 226

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG--NIALGEKIAEYLIS 305
             C+V++  + G +E A ++   M    D   W +++    +HG    AL   +    + 
Sbjct: 227 NTCLVDMYCKCGSLEIAKQVFEGMSYR-DVSSWNSIILGFAVHGKAKAALDYFVRMVKVE 285

Query: 306 QNLANSGTYV 315
           + + NS T+V
Sbjct: 286 KIVPNSITFV 295


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/436 (45%), Positives = 286/436 (65%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK G +  A  +F  M  K+V+ W+ +I G+AQ+G A  AL L   M +   +
Sbjct: 245 TSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYK 304

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ V+ V+VL AC Q+G L+ G+ +H YI   R +  +    TA+I+MYSKCGSL  AR 
Sbjct: 305 PDSVSLVSVLLACSQVGFLKLGKSVHGYI--VRRLHFDCVSSTAVIDMYSKCGSLSFART 362

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD+++ +D + WN++I  Y +HG G++AL LF +M    +KP   TF  LLSA +H+GL
Sbjct: 363 VFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGL 422

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +GR +F+ M +EY I+P  +HY CMV+LLSRAG+VEEA +L+  M  EP   +W  LL
Sbjct: 423 VEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALL 482

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
             C  HG   +GE  A+ ++  N  + G Y L+SN +A    WD VA VR +MK+ G++K
Sbjct: 483 SGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKK 542

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG S +E++ K+H FL  D  H + +EI  +L +++  +KA GYVP+T+ VLH++ E+ 
Sbjct: 543 VPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEV 602

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSE+LA+AFGL++T PGT + I KNLRVC DCH   K ISK   R+I++RD  
Sbjct: 603 KERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVK 662

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCGDYW
Sbjct: 663 RFHHFKDGVCSCGDYW 678



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 167/347 (48%), Gaps = 41/347 (11%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA+ G + +AR +FD   +  V  WN MI  Y++ G   EAL L+ RM +E V P+
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 107 EVTAVAVLSACGQIGALESGR--WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             T   VL AC +   L SG   W  +  +   +   +V VG A++N+Y+KCG + +A  
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGD---DVFVGAAVLNLYAKCGKMDEAMR 161

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD++  +D+V W +MI G A +G  ++A+ ++ +M + R++   +  +GL+ AC   G 
Sbjct: 162 VFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGH 221

Query: 225 VNEGRRFF---------------NTMKDEYAIEPKVEHYGC---------------MVNL 254
              G                    ++ D YA    +E   C               +++ 
Sbjct: 222 SKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISG 281

Query: 255 LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
            ++ G    A +LV+DM+    +PDSV   ++L AC   G + LG+ +  Y++ +   + 
Sbjct: 282 FAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDC 341

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
            +   + ++Y+  G+   ++  RT+  +   +     ++I  S  +H
Sbjct: 342 VSSTAVIDMYSKCGS---LSFARTVFDQISFRDSISWNAIIASYGIH 385



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           VS T ++  Y+K G ++ AR +FD +  +D + WN +I  Y  HG   EAL LF +M   
Sbjct: 342 VSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRET 401

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V+P+  T  ++LSA    G +E GR+  S + N   I+ + +    ++++ S+ G +++
Sbjct: 402 NVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEE 461

Query: 162 AR-LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFIGLLS 217
           A+ L+   + +  + +W +++ G   HG       L  EM     + L P D     L+S
Sbjct: 462 AQELIESMITEPGIAIWVALLSGCLNHG-----KFLIGEMAAKKVLELNPDDPGIYSLVS 516


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 284/445 (63%), Gaps = 3/445 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +RS    T +L  Y K G+V  A  +F  +++KD+V W+ M+ GYAQ G    A+ +F  
Sbjct: 425 ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 484

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           +    ++PNE T  ++L+ C    A +  G+  H +   SR +  ++ V +AL+ MY+K 
Sbjct: 485 LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMYAKK 543

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G+++ A  VF R  +KD+V WNSMI GYA HG    AL +F EM + ++K   +TFIG+ 
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC HAGLV EG ++F+ M  +  I P  EH  CMV+L SRAGQ+E+A K++ +M     
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           S +W T+L ACR+H    LG   AE +I+    +S  YVLLSN+YA  G+W   A+VR L
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           M E+ V+KEPG S IE+ NK + FLAGD  HP   +IYM LE+++  LK  GY P T  V
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           L DI ++ K+  L  HSE+LA+AFGLI+T  G+ + I+KNLRVC DCH V KLI+K   R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843

Query: 457 KIMMRDRNRFHHF-VNGTCSCGDYW 480
           +I++RD NRFHHF  +G CSCGD+W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 166/375 (44%), Gaps = 69/375 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF    D+ V TSLVD Y +G +                           K G     R
Sbjct: 120 IKFGFLDDVSVGTSLVDTYMKGSNF--------------------------KDG-----R 148

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M+E++VV W  +I GYA++ + +E L LF RM  E  +PN  T  A L    + G
Sbjct: 149 KVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEG 208

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
               G  +H+ +  +  +   + V  +LIN+Y KCG+++ AR++FD+   K VV WNSMI
Sbjct: 209 VGGRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------HAGLVNEGRR 230
            GYA +G   +AL +F  M    ++ S+ +F  ++  CA           H  +V  G  
Sbjct: 268 SGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFL 327

Query: 231 FFNTMKDEYAIEPK-----------VEHYGCMVNLLSRAGQV---------EEAYKLVMD 270
           F   ++    +               +  GC+ N++S    +         EEA  L  +
Sbjct: 328 FDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE 387

Query: 271 MK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
           MK   + P+   +  +L A  +   I+  E  A+ + +    +S     L + Y  +G  
Sbjct: 388 MKRKGVRPNEFTYSVILTALPV---ISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKV 444

Query: 328 DGVARVRTLMKEKGV 342
           +  A+V + + +K +
Sbjct: 445 EEAAKVFSGIDDKDI 459



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 136/254 (53%), Gaps = 17/254 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T ++  Y+K   +  A  LF ++    +VV W  MI G+ Q+    EA+ LF  M  + V
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNE T   +L+A   I   E    +H+ +  + N + +  VGTAL++ Y K G +++A 
Sbjct: 394 RPNEFTYSVILTALPVISPSE----VHAQVVKT-NYERSSTVGTALLDAYVKLGKVEEAA 448

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  ++DKD+V W++M+ GYA  G  + A+++F E+ +  +KP++ TF  +L+ CA   
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 508

Query: 224 L-VNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
             + +G++F       +AI+ +++   C    ++ + ++ G +E A + V   + E D V
Sbjct: 509 ASMGQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGNIESAEE-VFKRQREKDLV 562

Query: 279 LWGTLLGACRLHGN 292
            W +++     HG 
Sbjct: 563 SWNSMISGYAQHGQ 576



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 16/246 (6%)

Query: 55  GEVAAARV-----LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
           G V+++R+     LFD    +D   +  ++ G+++ G   EA  LF  +    +E +   
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLV 165
             +VL     +     GR +H      + IK     +V VGT+L++ Y K  + KD R V
Sbjct: 96  FSSVLKVSATLCDELFGRQLHC-----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD + +++VV W ++I GYA +    + L LF  M     +P+  TF   L   A  G+ 
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVG 210

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             G +  +T+  +  ++  +     ++NL  + G V +A +++ D       V W +++ 
Sbjct: 211 GRGLQ-VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA-RILFDKTEVKSVVTWNSMIS 268

Query: 286 ACRLHG 291
               +G
Sbjct: 269 GYAANG 274



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 34/217 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  LD  L VS++L+ +YA+ G++ SAE++F    ++ LVS  +M++ YA+ G+     
Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQ----- 576

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                     A +AL +F+ M   KV+ + VT + V +AC   G
Sbjct: 577 --------------------------AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAG 610

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSM 180
            +E G      +     I    +  + ++++YS+ G L+ A  V + + N     +W ++
Sbjct: 611 LVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTI 670

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +H   K  L        I +KP D     LLS
Sbjct: 671 LAACRVH--KKTELGRLAAEKIIAMKPEDSAAYVLLS 705


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/474 (43%), Positives = 300/474 (63%), Gaps = 6/474 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSL--VSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           V+  L+ LY   G +  A ++F T    +L  VS  TM++ Y K G++ AAR +F  M E
Sbjct: 118 VTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMPE 177

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           + +V W+ MID   + G  +EAL +F +M     +P+ V  V+VL  C  +GALE GRW+
Sbjct: 178 RGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWV 237

Query: 130 HSYIENSR--NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
           H +++  R      NV + TAL++MY KCG + +A  VFD V   DVV+WN+MI G AM+
Sbjct: 238 HRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMN 297

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G GK AL+LF  M      P++ TF+  L AC H G V+EG   F +M+D + IEP+ EH
Sbjct: 298 GHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRD-HGIEPRREH 356

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           YGC+ +LL RAG +EEA  +++DM +EP +  WG L+ +C +H N+ +GE++ + LI   
Sbjct: 357 YGCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELE 416

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             + G YV L N+YA  G W+    +R +M+E+G +KE G S IE +  VHEF +GD RH
Sbjct: 417 PDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRH 476

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQ 426
           P+++ IY +LE++   L+  GYV  T  VL D+  E+ K N+L  HSE+LA+AFG+++  
Sbjct: 477 PQTRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFGILNIP 536

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I+IVKNLRVC DCH   KL+SK   R+I++RDR+RFH F +G CSC D+W
Sbjct: 537 HDMPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 284/438 (64%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-- 102
           T ++  Y K   V  AR  F+ +   +VV W+ M+  YAQ+G A  AL L+R M + +  
Sbjct: 49  TALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKG 108

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + PN VT + +L AC  +GAL  GR IH+ +   R    ++ V  AL+N Y +CGSL DA
Sbjct: 109 MAPNRVTFITLLDACSFLGALAEGRKIHAAVAE-RGFDTDLVVCNALVNFYGRCGSLGDA 167

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           ++VFD +  +DV+ W+SMI  +A  G   +A++L++ M      P DI FI +L AC+++
Sbjct: 168 KIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNS 227

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+V     FF ++  +  +EP +EHY CMV++L RAG++ +A  L+  M   P  +L+ T
Sbjct: 228 GVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMT 287

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +L AC+L+ ++  GE  AE +   +  NS  Y+ L+NIY+A       AR+R LM+E+G+
Sbjct: 288 MLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGI 347

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K+PGCS IE+ ++VHEF+AGD  HP+  EIY  ++ +   +K  GY   T++VL D+ E
Sbjct: 348 KKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEE 407

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
            +K+N L  HSEKLA+AFGLIST PG  ++IVKNLRVC DCHA  K+ISK TGR+I++RD
Sbjct: 408 DEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRD 467

Query: 463 RNRFHHFVNGTCSCGDYW 480
            NRFHHF++G CSC DYW
Sbjct: 468 TNRFHHFLDGMCSCNDYW 485



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 118/206 (57%), Gaps = 5/206 (2%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           VE N+VT V VLS     G+LE GR +HS +  +  ++V+V VGTAL+NMY KC S+++A
Sbjct: 6   VERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGA-GLEVDVIVGTALVNMYGKCQSVEEA 64

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSACA 220
           R  F++++  +VV W++M+  YA +G  + AL+L+ EM   R  + P+ +TFI LL AC+
Sbjct: 65  RAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
             G + EGR+    +  E   +  +     +VN   R G + +A K+V D     D + W
Sbjct: 125 FLGALAEGRKIHAAVA-ERGFDTDLVVCNALVNFYGRCGSLGDA-KIVFDGMRRRDVISW 182

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQ 306
            +++ A    G +    ++   ++S+
Sbjct: 183 SSMISAFAQRGRVDEAMELYHRMLSE 208



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 86/153 (56%), Gaps = 6/153 (3%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +L+D  +  G +    K+ A + +R     LV    ++  Y + G +  A+++FD M  +
Sbjct: 118 TLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRR 177

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE-SGRWI 129
           DV+ W+ MI  +AQ G  +EA+ L+ RML+E   P+++  ++VL AC   G +E SG + 
Sbjct: 178 DVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFF 237

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            S + +++ ++  ++    ++++  + G L+DA
Sbjct: 238 RSIVGDTQ-VEPTLEHYACMVDVLGRAGKLRDA 269


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/511 (42%), Positives = 311/511 (60%), Gaps = 34/511 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLV------------------- 42
           +K  LD  L+V+T+L+ +Y   G V  A K+F  MPQ +LV                   
Sbjct: 300 LKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAR 359

Query: 43  ------------SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
                       S   ML  Y K GE+  A+ +F +M  +D V W+ MI G++ +G  NE
Sbjct: 360 EIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNE 419

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           +   FR +L  ++ PNEV+   VLSAC Q GA E G+ +H ++E S    + V V  ALI
Sbjct: 420 SFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWI-VSVNNALI 478

Query: 151 NMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +MYS+CG++  ARLVF+ + +K  +V W SMI G AMHG G++A+++FNEM    + P +
Sbjct: 479 DMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDE 538

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           I+FI LL AC+HAGL+ EG  +F+ MK  Y IEP VEHYGCMV+L  R+G++++AY  + 
Sbjct: 539 ISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFIC 598

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329
            M I P +++W TLLGAC  HGNI L E++ + L   +  NSG  VLLSN+YA  G W  
Sbjct: 599 QMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKD 658

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-G 388
           VA +R  M  + ++K    S +E+   +++F A + +     E +  L+EI   L+ E G
Sbjct: 659 VASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAG 718

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           Y P+    L+D+ E++K++ +  HSEKLA+AF L     G +I+IVKNLR+C DCHAV K
Sbjct: 719 YAPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMK 778

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           L S+  G +I++RDRNRFH F +G+CSCGDY
Sbjct: 779 LTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/508 (40%), Positives = 318/508 (62%), Gaps = 40/508 (7%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG----------- 55
           ++++   T++V  YA+  D+ +A + F  MP+RS+VS   ML+ YA+ G           
Sbjct: 102 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 161

Query: 56  ----------------------EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
                                 ++ +AR LF+ M  ++VV WN MI GYAQ+G +  A+ 
Sbjct: 162 MLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 94  LFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
           LF+ M+ A+K+ P+EVT V+V+SACG +GALE G W+  ++  ++ IK+++    A+I M
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ-IKLSISGHNAMIFM 280

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           YS+CGS++DA+ VF  +  +DVV +N++I G+A HG G +A+ L + M    ++P  +TF
Sbjct: 281 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 340

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           IG+L+AC+HAGL+ EGR+ F ++KD     P ++HY CMV+LL R G++E+A + +  M 
Sbjct: 341 IGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMP 395

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
           +EP + ++G+LL A R+H  + LGE  A  L      NSG ++LLSNIYA+ G W  V R
Sbjct: 396 MEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVER 455

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
           +R  MK+ GV+K  G S +E   K+H+F+  D  H +S +IY +L E+   ++  GY+  
Sbjct: 456 IREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD 515

Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
              VL D+ E++K+  +  HSEKLA+ + L+ ++ G  I++VKNLRVC DCH   K+ISK
Sbjct: 516 KSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISK 575

Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             GR I++RD NRFH F +G CSC DYW
Sbjct: 576 LEGRVIIVRDNNRFHCFNDGLCSCKDYW 603


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/440 (45%), Positives = 288/440 (65%), Gaps = 10/440 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T Y+K G++  AR +FD M EK +V WN ++ G+ Q+GLA+EA+ +F +M     EP+
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 207

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T V++LSAC Q GA+  G W+H YI  S  + +NV++GTALIN+YS+CG +  AR VF
Sbjct: 208 SATFVSLLSACAQTGAVSLGSWVHQYI-ISEGLDLNVKLGTALINLYSRCGDVGKAREVF 266

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM---CRIRLKPSDITFIGLLSACAHAG 223
           D++ + +V  W +MI  Y  HG+G+ A++LFN+M   C     P+++TF+ +LSACAHAG
Sbjct: 267 DKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGP--IPNNVTFVAVLSACAHAG 324

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV---LW 280
           LV EGR  +  M   Y + P VEH+ CMV++L RAG ++EAYK +  +     +    LW
Sbjct: 325 LVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALW 384

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             +LGAC++H N  LG +IA+ LI+    N G +V+LSNIYA  G  D V+ +R  M   
Sbjct: 385 TAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRN 444

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            ++K+ G S IE+ NK + F  GD  H ++ EIY  LE +    K  GY P ++ V+H +
Sbjct: 445 NLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQV 504

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLAVAFGL+ T    +I IVKNLR+C DCH+ FK IS  + R+I +
Sbjct: 505 EEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITV 563

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD+ RFHHF NG+CSC DYW
Sbjct: 564 RDKLRFHHFQNGSCSCLDYW 583



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 5/253 (1%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           RSL++    L C A+   +A   +LF  +   D   +N +I   ++  L    +  +RRM
Sbjct: 41  RSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRM 98

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L+  V P+  T  +V+ +C  + AL  G+ +H +   S    ++  V  AL+  YSKCG 
Sbjct: 99  LSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVS-GFGLDTYVQAALVTFYSKCGD 157

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++ AR VFDR+ +K +V WNS++ G+  +G   +A+Q+F +M     +P   TF+ LLSA
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA  G V+ G      +  E  ++  V+    ++NL SR G V +A ++   MK E +  
Sbjct: 218 CAQTGAVSLGSWVHQYIISE-GLDLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVA 275

Query: 279 LWGTLLGACRLHG 291
            W  ++ A   HG
Sbjct: 276 AWTAMISAYGTHG 288



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
           T ++  Y++ G+V  AR +FD M+E +V  W  MI  Y  HG   +A+ LF +M  +   
Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGP 306

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN VT VAVLSAC   G +E GR ++  +  S  +   V+    +++M  + G L +A 
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAY 366

Query: 164 LVFDRVNDKD----VVVWNSMIVGYAMH 187
               +++         +W +M+    MH
Sbjct: 367 KFIHQLDATGKATAPALWTAMLGACKMH 394


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/518 (40%), Positives = 301/518 (58%), Gaps = 43/518 (8%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ------- 54
            K  L   L+V   LV +Y + G +  A  +   M +R +VS  +++  YA+        
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 55  ---------------GEVAA---------------ARVLFDDMEEKDVVCWNVMIDGYAQ 84
                          G +A+                + +F  M +K +V WNVMI  Y +
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + +  EA+ L+ RM A+  EP+ V+  +VL ACG   AL  G+ IH YIE  + I  N+ 
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP-NLL 345

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  ALI+MY+KCG L+ AR VF+ +  +DVV W +MI  Y   G G DA+ LF+++    
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           L P  I F+  L+AC+HAGL+ EGR  F  M D Y I P++EH  CMV+LL RAG+V+EA
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           Y+ + DM +EP+  +WG LLGACR+H +  +G   A+ L       SG YVLLSNIYA  
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W+ V  +R +MK KG++K PG S++E++  +H FL GD  HP+S EIY  L+ +   +
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKM 585

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ-----PGTSIKIVKNLRV 439
           K  GYVP ++  LHD+ E+ K+  L VHSEKLA+ F L++T+        +I+I KNLR+
Sbjct: 586 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRI 645

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           C DCH   KLIS+ T R+I++RD NRFH F  G CSC 
Sbjct: 646 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA   +VA+AR +FD++ E++V+  NVMI  Y  +G   E + +F  M    V P+
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC   G +  GR IH        +   + VG  L++MY KCG L +ARLV 
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSA-TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D ++ +DVV WNS++VGYA +    DAL++  EM  +++     T   LL A ++    N
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 258

Query: 227 ---EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
                  FF   K           +  M+ +  +     EA +L   M+    EPD+V  
Sbjct: 259 VMYVKDMFFKMGKKSLV------SWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTL 336
            ++L AC     ++LG+KI  Y+  + L  +   +LL N    +YA  G  +    V   
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKLIPN---LLLENALIDMYAKCGCLEKARDVFEN 369

Query: 337 MKEKGV 342
           MK + V
Sbjct: 370 MKSRDV 375



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R +HS I    +++ N  +G  L+  Y+    +  AR VFD + +++V++ N MI  Y  
Sbjct: 59  RTVHSRI-ILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN 117

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +GF  + +++F  MC   ++P   TF  +L AC+ +G +  GR+   +   +  +   + 
Sbjct: 118 NGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLSSTLF 176

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
               +V++  + G + EA +LV+D     D V W +L+
Sbjct: 177 VGNGLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLV 213


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/479 (42%), Positives = 302/479 (63%), Gaps = 21/479 (4%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++ + VS SL+ LYA+ GD+ +AE +F++M +R +VS T+M+T Y++ G +  AR  FD 
Sbjct: 393 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 452

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALES 125
           M  ++ + WN M+  Y QHG   + L ++  ML++K V P+ VT V +   C  IGA + 
Sbjct: 453 MATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL 512

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G  I  +   +  + +NV V  A I MYSKCG + +A+ +FD +N KDVV WN+MI GY+
Sbjct: 513 GDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYS 571

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
            HG GK A + F++M     KP  I+++ +LS C+H+GLV EG+ +F+ M   + I P +
Sbjct: 572 QHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGL 631

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EH+ CMV+LL RAG + EA  L+  M ++P + +WG LL AC++HGN  L E  A+++  
Sbjct: 632 EHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFE 691

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
            +  +SG+Y+LL+ IY+  G  D  A+VR LM++KG++K PG S +E+ NKVH F A D+
Sbjct: 692 LDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDV 751

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYV----PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            HP+   I   ++E+   +   GYV    P+++I  H             HSEKLAVAFG
Sbjct: 752 SHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEI--H-------------HSEKLAVAFG 796

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++S      I I+KNLR+C DCH V KLIS  T R+ ++RD  RFHHF +G+CSCGDYW
Sbjct: 797 IMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 182/371 (49%), Gaps = 18/371 (4%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V T+LVD++ R G V  A +LF+ + + ++    +ML  YAK   +  A  
Sbjct: 156 KFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 215

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F+DM E+DVV WN+MI   +Q G   EAL L   M  + V  +  T  + L+AC ++ +
Sbjct: 216 YFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFS 275

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G+ +H+ +  S   +++  V +ALI +Y+KCGS K+A+ VF+ + D++ V W  +I 
Sbjct: 276 LGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 334

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAI 241
           G   +     +++LFN+M    +         L+S C +   +  GR+  +  +K  +  
Sbjct: 335 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR 394

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
              V +   +++L ++ G ++ A + V     E D V W +++ A    GNI    K  E
Sbjct: 395 AIVVSN--SLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITAYSQIGNII---KARE 448

Query: 302 YLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE--------PGCSSIE 352
           +       N+ T+  +   Y   G   DG+     ++ +K V  +         GC+ I 
Sbjct: 449 FFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 508

Query: 353 LSNKVHEFLAG 363
            +NK+ + + G
Sbjct: 509 -ANKLGDQIIG 518



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 26/299 (8%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A +L  A + + ++++   M+  YAKQG ++ A
Sbjct: 47  VTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDA 106

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHG-------------LANEALVLFRRMLAEKVEPNE 107
             LFD M  +DV  WN ++   ++               LA + L LF +         E
Sbjct: 107 EELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVE 166

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
              V +   CG +   +    + S IE     +  +    +++  Y+K   +  A   F+
Sbjct: 167 TALVDMFVRCGYV---DFASRLFSQIE-----RPTIFCRNSMLAGYAKLYGIDHAIEYFE 218

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
            + ++DVV WN MI   +  G  ++AL L  EM R  ++    T+   L+ACA    +  
Sbjct: 219 DMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGW 278

Query: 228 GRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           G++     ++    I+P V     ++ L ++ G  +EA ++   ++ + +SV W  L+G
Sbjct: 279 GKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIG 334



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 32/189 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  ++ V+ + + +Y++ G +  A+KLF  +  + +VS   M+T Y++ G    A
Sbjct: 520 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 579

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              FDD                               ML++  +P+ ++ VAVLS C   
Sbjct: 580 AKTFDD-------------------------------MLSKGAKPDYISYVAVLSGCSHS 608

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G ++ G+     +     I   ++  + ++++  + G L +A+ + D++  K    VW +
Sbjct: 609 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 668

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 669 LLSACKIHG 677



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 143/351 (40%), Gaps = 91/351 (25%)

Query: 102 KVEPNEVT-AVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           ++ P+ VT A+A  L +CG  GAL   R +H  +  +  +   V +   L++ Y  CG+L
Sbjct: 13  RLLPHAVTQALADALRSCGSRGALAGARALHGRLV-TVGLASAVFLQNTLLHAYLSCGAL 71

Query: 160 KDA-RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM------------------ 200
            DA RL+   + + +V+  N M+ GYA  G   DA +LF+ M                  
Sbjct: 72  SDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRP 131

Query: 201 -----------CRIRLKPS------DITFIG-------LLSACAHAGLVNEGRRFFNTMK 236
                      CR  L P          F G       L+      G V+   R F+ ++
Sbjct: 132 AGSWMSCGALGCR-ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 190

Query: 237 DE---------------YAIEPKVEHY-----------GCMVNLLSRAGQVEEAYKLVMD 270
                            Y I+  +E++             M+  LS++G+V EA  LV++
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 250

Query: 271 MK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIG 325
           M    +  DS  + + L AC    ++  G+++   +I ++L     YV   L  +YA  G
Sbjct: 251 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI-RSLPQIDPYVASALIELYAKCG 309

Query: 326 NWDGVARVRTLMKEK-----------GVQKEPGCSSIELSNKVH-EFLAGD 364
           ++    RV   ++++            +Q E    S+EL N++  E +A D
Sbjct: 310 SFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAID 360


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/456 (42%), Positives = 293/456 (64%), Gaps = 9/456 (1%)

Query: 33  FATMPQRSLVSLTT-----MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ--H 85
           F+ +P+ S   L +     +L  + + G +A+ R +FD +   D+  WN ++  Y +   
Sbjct: 142 FSQIPRCSCRLLRSCPRAVLLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCAS 201

Query: 86  GLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
             A+  L LF RM++   V PNE+T VAV+ ACG++GAL  G W H+Y+   R + +N  
Sbjct: 202 SAADAILELFSRMISLGTVRPNEITLVAVIGACGELGALGHGVWAHTYLVK-RQLAINRI 260

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V TAL+ MY+ CG L  A  VF   +D+D   +N+M+ G A HG G+ AL LF+ M    
Sbjct: 261 VTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSG 320

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           +    +T + +L +CAHA LV+EG  +F+ M+ E+ IEP++EHYGC+V++LSRAG++++A
Sbjct: 321 VPVDGVTILSVLCSCAHAELVDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDA 380

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
            KL+ +M I P++ ++ +L+ AC +HGN+ LGE++   L   +  +SG +VL++N+YA +
Sbjct: 381 EKLIHEMPIVPNAAIYRSLIRACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARM 440

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
             W+   + R  MK  G+ K PG S ++++  +HEFL GD  HP SKEIY M+EEI   L
Sbjct: 441 NRWEEAKKTRKEMKSMGIDKSPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARL 500

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCH 444
              G+   T  VL D+ E+ K ++L  HSE+LA+ F LI++ PGT I+I+KNLRVC DCH
Sbjct: 501 SEHGHRSSTTSVLFDVEEEDKADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCH 560

Query: 445 AVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
              KL+S+  GR+I+MRDR RFHHF  G CSCGD+W
Sbjct: 561 ESAKLVSRVYGREIVMRDRTRFHHFREGECSCGDFW 596



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 32/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  L  +  V+T+LV++YA  G +  AE +FAT   R       ML     QG  A   
Sbjct: 251 VKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAML-----QGLAA--- 302

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG    AL LF RM    V  + VT ++VL +C    
Sbjct: 303 -----------------------HGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAE 339

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++ G      +E    I+  ++    +++M S+ G L DA +L+ +     +  ++ S+
Sbjct: 340 LVDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSL 399

Query: 181 IVGYAMHG 188
           I    +HG
Sbjct: 400 IRACDIHG 407


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/479 (42%), Positives = 302/479 (63%), Gaps = 21/479 (4%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           ++ + VS SL+ LYA+ GD+ +AE +F++M +R +VS T+M+T Y++ G +  AR  FD 
Sbjct: 403 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 462

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALES 125
           M  ++ + WN M+  Y QHG   + L ++  ML++K V P+ VT V +   C  IGA + 
Sbjct: 463 MATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKL 522

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G  I  +   +  + +NV V  A I MYSKCG + +A+ +FD +N KDVV WN+MI GY+
Sbjct: 523 GDQIIGHTVKA-GLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYS 581

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
            HG GK A + F++M     KP  I+++ +LS C+H+GLV EG+ +F+ M   + I P +
Sbjct: 582 QHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGL 641

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EH+ CMV+LL RAG + EA  L+  M ++P + +WG LL AC++HGN  L E  A+++  
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFE 701

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
            +  +SG+Y+LL+ IY+  G  D  A+VR LM++KG++K PG S +E+ NKVH F A D+
Sbjct: 702 LDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDV 761

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYV----PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            HP+   I   ++E+   +   GYV    P+++I  H             HSEKLAVAFG
Sbjct: 762 SHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEI--H-------------HSEKLAVAFG 806

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++S      I I+KNLR+C DCH V KLIS  T R+ ++RD  RFHHF +G+CSCGDYW
Sbjct: 807 IMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 182/371 (49%), Gaps = 18/371 (4%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V T+LVD++ R G V  A +LF+ + + ++    +ML  YAK   +  A  
Sbjct: 166 KFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIE 225

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F+DM E+DVV WN+MI   +Q G   EAL L   M  + V  +  T  + L+AC ++ +
Sbjct: 226 YFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFS 285

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G+ +H+ +  S   +++  V +ALI +Y+KCGS K+A+ VF+ + D++ V W  +I 
Sbjct: 286 LGWGKQLHAKVIRSLP-QIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIG 344

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAI 241
           G   +     +++LFN+M    +         L+S C +   +  GR+  +  +K  +  
Sbjct: 345 GSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNR 404

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
              V +   +++L ++ G ++ A + V     E D V W +++ A    GNI    K  E
Sbjct: 405 AIVVSN--SLISLYAKCGDLQNA-EFVFSSMSERDIVSWTSMITAYSQIGNII---KARE 458

Query: 302 YLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKE--------PGCSSIE 352
           +       N+ T+  +   Y   G   DG+     ++ +K V  +         GC+ I 
Sbjct: 459 FFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 518

Query: 353 LSNKVHEFLAG 363
            +NK+ + + G
Sbjct: 519 -ANKLGDQIIG 528



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 38/318 (11%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A +L  A + + ++++   M+  YAKQG ++ A
Sbjct: 31  VTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDA 90

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQ 119
             LFD M  +DV  WN ++ GY Q     + L  F  M  +    PN  T   V+ +CG 
Sbjct: 91  EELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGA 150

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--------- 170
           +G  E    +        +   +  V TAL++M+ +CG +  A  +F ++          
Sbjct: 151 LGCRELAPQLLGLFWKF-DFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNS 209

Query: 171 ----------------------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
                                 ++DVV WN MI   +  G  ++AL L  EM R  ++  
Sbjct: 210 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 269

Query: 209 DITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
             T+   L+ACA    +  G++     ++    I+P V     ++ L ++ G  +EA ++
Sbjct: 270 STTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA--SALIELYAKCGSFKEAKRV 327

Query: 268 VMDMKIEPDSVLWGTLLG 285
              ++ + +SV W  L+G
Sbjct: 328 FNSLQ-DRNSVSWTVLIG 344



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 32/189 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  ++ V+ + + +Y++ G +  A+KLF  +  + +VS   M+T Y++ G    A
Sbjct: 530 TVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQA 589

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              FDD                               ML++  +P+ ++ VAVLS C   
Sbjct: 590 AKTFDD-------------------------------MLSKGAKPDYISYVAVLSGCSHS 618

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G ++ G+     +     I   ++  + ++++  + G L +A+ + D++  K    VW +
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 679 LLSACKIHG 687



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 121/302 (40%), Gaps = 80/302 (26%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           NV     ++N Y+K GSL DA  +FDR+  +DV  WN+++ GY       D L+ F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 202 RIRLK-PSDITFIGLLSACA-----------------------------------HAGLV 225
           R     P+  TF  ++ +C                                      G V
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 226 NEGRRFFNTMKDE---------------YAIEPKVEHY-----------GCMVNLLSRAG 259
           +   R F+ ++                 Y I+  +E++             M+  LS++G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 260 QVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV- 315
           +V EA  LV++M    +  DS  + + L AC    ++  G+++   +I ++L     YV 
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI-RSLPQIDPYVA 308

Query: 316 -LLSNIYAAIGNWDGVARVRTLMKEK-----------GVQKEPGCSSIELSNKVH-EFLA 362
             L  +YA  G++    RV   ++++            +Q E    S+EL N++  E +A
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 363 GD 364
            D
Sbjct: 369 ID 370


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 295/460 (64%), Gaps = 5/460 (1%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV-VCWNVMID 80
           G  L    L A +   + V  ++++  Y K G + AA  +FD      +D+   W+ M+ 
Sbjct: 263 GRQLHGRVLIAALEGDAFVR-SSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVA 321

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GY Q+G   EAL LFRRML E V  +  T  +V +AC  +G +E GR +H  +E     K
Sbjct: 322 GYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLW-YK 380

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
           ++  + +A+++MY+KCG+L+DAR +FDR   K++ VW SM+  YA HG G+ A++LF  M
Sbjct: 381 LDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERM 440

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              ++ P++IT +G+LSAC+H GLV+EG  +F  M++EY I P +EHY C+V+L  R+G 
Sbjct: 441 TAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGL 500

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           +++A   + +  I  ++++W TLL ACRLH +    +  +E L+     ++G+YV+LSNI
Sbjct: 501 LDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNI 560

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           YA    W     +R  M+E+ V+K+PG S I L N VH F+AGD  HP+S EIY  LE++
Sbjct: 561 YATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKL 620

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
              LK  GY  +T +V+HD+ ++Q++ +L+ HSEKLA+AFG+IST  GT ++I KNLRVC
Sbjct: 621 VERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVC 680

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K IS  TGR+I++RD  RFHHF + +CSC D+W
Sbjct: 681 EDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ +  +++D+YA+ G    A ++F  M +R  VS    +    + G++  +  LFD+  
Sbjct: 146 DVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESP 205

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +D   WN +I G  + G A +AL   RRM    V  N  T        G +   + GR 
Sbjct: 206 LRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQ 265

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDV-VVWNSMIVGYA 185
           +H  +  +  ++ +  V ++L++MY KCG L+ A  VFD  +   +D+   W++M+ GY 
Sbjct: 266 LHGRVLIA-ALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYV 324

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPK 244
            +G  ++AL LF  M R  +     T   + +ACA+ G+V +GR+    + K  Y ++  
Sbjct: 325 QNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAP 384

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +     +V++ ++ G +E+A + + D     +  +W ++L +   HG   +  ++ E + 
Sbjct: 385 LA--SAIVDMYAKCGNLEDA-RSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMT 441

Query: 305 SQNL 308
           ++ +
Sbjct: 442 AEKM 445



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80
           ARGG   S E   AT+P        ++L  + ++     AR +FD+   +    W + I 
Sbjct: 32  ARGG---SLEARLATVPHER----ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTIS 84

Query: 81  GYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
           G A+ G   + +  F  MLAE +  PN     AV+  C  +G +ESG+ +H ++  +  +
Sbjct: 85  GCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRN-GV 143

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
            ++V +  A+++MY+KCG  + AR VF  + ++D V WN  I      G    ++QLF+E
Sbjct: 144 HLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDE 203

Query: 200 MCRIRLKPSDITFIGLLSACAHAG 223
              +R   S  T I  L    HA 
Sbjct: 204 -SPLRDTTSWNTIISGLMRSGHAA 226


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/441 (44%), Positives = 283/441 (64%), Gaps = 2/441 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+    ++  Y + GEV  A  +F+ +++KD+V W  M++ +A++GL +EA+ LF +ML 
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P+ V  V +L A   + +L  G+ IH ++   +   V   V ++L++MYS CGS+ 
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK-FPVEGAVVSSLVDMYSGCGSMN 618

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A  VFD    KDVV+W +MI    MHG GK A+ +F  M    + P  ++F+ LL AC+
Sbjct: 619 YALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACS 678

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+ LV+EG+ + + M  +Y ++P  EHY C+V+LL R+GQ EEAYK +  M +EP SV+W
Sbjct: 679 HSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVW 738

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGACR+H N  L     + L+     N G YVL+SN++A +G W+ V  +RT M E+
Sbjct: 739 CALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQ 798

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG-YVPQTQIVLHD 399
           G++K+P CS IE+ N VH F A D  H  S+ I++ L EI   L+ EG YV  T  VLHD
Sbjct: 799 GLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHD 858

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + E++K + L  HSE+LA++FGLIST  GT ++I KNLRVC DCH   KL+SK   R+I+
Sbjct: 859 VSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIV 918

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD NRFHHF  GTCSCGD+W
Sbjct: 919 VRDANRFHHFSGGTCSCGDFW 939



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 146/321 (45%), Gaps = 36/321 (11%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRR 97
           RS +    ++  YAK G + +A  +F+ M + +DV  WN  I G  Q+G+  EAL LFRR
Sbjct: 196 RSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRR 255

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M ++    N  T V VL  C ++  L  GR +H+ +      + N+Q   AL+ MY++CG
Sbjct: 256 MQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKC-GTEFNIQC-NALLVMYARCG 313

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  A  VF  + DKD + WNSM+  Y  +    +A+  F EM +    P     + LLS
Sbjct: 314 WVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLS 373

Query: 218 ACAHAGLVNEGR---------------RFFNTMKDEYAIEPKVE---------------H 247
           A  H G +  GR               +  NT+ D Y     VE                
Sbjct: 374 AVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVS 433

Query: 248 YGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  ++   +++ +  EA   ++      I+ D ++ G++L AC    +I+L +++  Y I
Sbjct: 434 WTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAI 493

Query: 305 SQNLANSGTYVLLSNIYAAIG 325
              L +      + +IY   G
Sbjct: 494 RNGLLDLILKNRIIDIYGECG 514



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 152/334 (45%), Gaps = 34/334 (10%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +    +L  YA+ G V +A  +F ++ +KD + WN M+  Y Q+ L  EA+  F  M+  
Sbjct: 300 IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQN 359

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              P+    V++LSA G +G L +GR +H+Y    R +  ++Q+   L++MY KC S++ 
Sbjct: 360 GFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQR-LDSDLQIANTLMDMYIKCYSVEC 418

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA- 220
           +  VFDR+  KD V W ++I  YA      +A+  F    +  +K   +    +L AC+ 
Sbjct: 419 SARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSG 478

Query: 221 ----------HAGLVNEG-------RRFFNTMKD-----------EYAIEPKVEHYGCMV 252
                     H+  +  G        R  +   +           E   +  +  +  MV
Sbjct: 479 LKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMV 538

Query: 253 NLLSRAGQVEEAYKL---VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           N  +  G + EA  L   +++  I+PDSV    +LGA     ++  G++I  +LI     
Sbjct: 539 NCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFP 598

Query: 310 NSGTYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
             G  V  L ++Y+  G+ +   +V    K K V
Sbjct: 599 VEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDV 632



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 15/248 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-- 102
           T +L  Y K G +  A  LFD M  + V  WN +I      G A EA+ ++R M A +  
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 103 --VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
               P+  T  +VL ACG  G    G  +H     S  +  +  V  AL+ MY+KCG L 
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKS-GLDRSTLVANALVGMYAKCGLLD 215

Query: 161 DARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            A  VF+ + D +DV  WNS I G   +G   +AL LF  M       +  T +G+L  C
Sbjct: 216 SALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 220 AHAGLVNEGRRFFNTM---KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           A    +N GR     +     E+ I+        ++ + +R G V+ A ++  ++  + D
Sbjct: 276 AELAQLNHGRELHAALLKCGTEFNIQCNA-----LLVMYARCGWVDSALRVFREIG-DKD 329

Query: 277 SVLWGTLL 284
            + W ++L
Sbjct: 330 YISWNSML 337



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 11/178 (6%)

Query: 122 ALESGRWIHSYIENSRNIKVNVQ--VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           A+  GR +H++   +  +  +    + T L+ MY KCG L DA  +FD +  + V  WN+
Sbjct: 70  AVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNA 129

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIR----LKPSDITFIGLLSACAHAGLVNEGR--RFFN 233
           +I      G   +A+ ++  M          P   T   +L AC   G   +GR     +
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG---DGRCGSEVH 186

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  +  ++        +V + ++ G ++ A ++   M+   D   W + +  C  +G
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNG 244


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 283/440 (64%), Gaps = 2/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V+ T+++  YAK G +  A  +F  M  ++ V W+ MI G+AQ+G ++EAL LFR M A
Sbjct: 244 VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQA 303

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P+    V+ L AC  IG L+ GR +H +I   R    N  +GTA I+MYSKCGSL 
Sbjct: 304 SGIQPDSGALVSALLACSNIGFLKLGRSVHGFI--VRRFDFNCILGTAAIDMYSKCGSLA 361

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+++F+ ++D+D+++WN+MI     HG G+DAL LF EM    ++P   TF  LLSA +
Sbjct: 362 SAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F  M + + I P  +HY C+V+LL+R+G VEEA  L+  MK EP   +W
Sbjct: 422 HSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIW 481

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LL  C  +  + LGE IA+ ++     + G   L+SN+YAA   WD V +VR LMK+ 
Sbjct: 482 VALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDS 541

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCSSIE+    H F+  D  HP+ +EI   + +++  ++  GY+P+T+ V HD+
Sbjct: 542 GSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDL 601

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+  L  HSE+LA+AFGL++T PGT + I+KNLRVC DCH   K ISK   R+I++
Sbjct: 602 EEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVV 661

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSC DYW
Sbjct: 662 RDAKRFHHFKDGVCSCRDYW 681



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 36/297 (12%)

Query: 44  LTTMLTCYAKQGEVAAAR-VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           ++++   YA+ G++AAA   L        +  WN +I  +++ G    AL +FR  L   
Sbjct: 45  ISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFR-ALPPA 103

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+  T    LSAC ++G L  G  +     ++   K +V V ++L+++Y++ G++ DA
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDA-GYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-- 220
             VF R+  +D V W++M+ G+   G   DA+Q++  M    +K  ++  IG++ AC   
Sbjct: 163 VKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 221 ---------HAGLVNEGRRF----FNTMKDEYA----IEPKVEHYGCMVNL--------- 254
                    H  L+  G R       ++ D YA    ++     +G MV+          
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 255 --LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              ++ GQ +EA +L  +M+   I+PDS    + L AC   G + LG  +  +++ +
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR 339


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/481 (43%), Positives = 297/481 (61%), Gaps = 6/481 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGEVAA 59
           +KF       + TSLV  YA    +  A +L   MP     L++   ++    K GE   
Sbjct: 47  IKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDF 106

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A+ +F  M  +DVV WN MI G  ++    EAL  FR ML   VEP+  T  +V++ C +
Sbjct: 107 AKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCAR 166

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G+      +H  +   + I++N  + +ALI++YSKCG +  A+ VF+ +   DV VWNS
Sbjct: 167 LGSSHHAELVHGLM-IEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNS 225

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A+HG   DA+ +F++M    + P  ITFIG+L+AC+H GLV +GRR+F+ M+  Y
Sbjct: 226 MINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHY 285

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           +I+P++EHYG MV+LL RAG VEEAY ++  M +EPD V+W  LL ACR   N  LGE +
Sbjct: 286 SIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGE-V 344

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A   IS    NSG Y+LLSN+Y ++  WD   RVR +MK  GV+K  G S +EL   +H+
Sbjct: 345 AIAKISH--LNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQ 402

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F AGD  HP++  IY +LE +    K EG++P T +VL D+ +++++ +L  HSEKLA+A
Sbjct: 403 FKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALA 462

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           + ++ T PGT I++ KNLR C DCH   K++S+   R I++RDR RFH F  G CSC DY
Sbjct: 463 YVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDY 522

Query: 480 W 480
           W
Sbjct: 523 W 523


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/481 (43%), Positives = 297/481 (61%), Gaps = 6/481 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGEVAA 59
           +KF       + TSLV  YA    +  A +L   MP     L++   ++    K GE   
Sbjct: 86  IKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDF 145

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A+ +F  M  +DVV WN MI G  ++    EAL  FR ML   VEP+  T  +V++ C +
Sbjct: 146 AKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCAR 205

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G+      +H  +   + I++N  + +ALI++YSKCG +  A+ VF+ +   DV VWNS
Sbjct: 206 LGSSHHAELVHGLMIE-KKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNS 264

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A+HG   DA+ +F++M    + P  ITFIG+L+AC+H GLV +GRR+F+ M+  Y
Sbjct: 265 MINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHY 324

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           +I+P++EHYG MV+LL RAG VEEAY ++  M +EPD V+W  LL ACR   N  LGE +
Sbjct: 325 SIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACRNFKNPELGE-V 383

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A   IS    NSG Y+LLSN+Y ++  WD   RVR +MK  GV+K  G S +EL   +H+
Sbjct: 384 AIAKISH--LNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQ 441

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F AGD  HP++  IY +LE +    K EG++P T +VL D+ +++++ +L  HSEKLA+A
Sbjct: 442 FKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALA 501

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           + ++ T PGT I++ KNLR C DCH   K++S+   R I++RDR RFH F  G CSC DY
Sbjct: 502 YVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDY 561

Query: 480 W 480
           W
Sbjct: 562 W 562


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/436 (46%), Positives = 289/436 (66%), Gaps = 7/436 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            T++  YAK GE+  A+V FD M E D   WN +I  YAQ+GL+ EA  +F  M    V+
Sbjct: 127 NTLMDAYAKFGEMGVAKV-FDGMNESDHYFWNSVIAEYAQNGLSAEAFSVFGDM----VK 181

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
                  AV+   G  GAL+ G+ IH  +    +++ +V VGT+++++Y KC  ++ AR 
Sbjct: 182 SGNFRYNAVIMDXGLSGALQLGKCIHHQV-IKMDLEDSVFVGTSIVDIYCKCERVEMARK 240

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            FD +  K+V  W +M+ GY MHG  K+A+++F +M R  +KP+ ITF+ +L+AC+HAG+
Sbjct: 241 AFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGM 300

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + EG  +FN MK E+ +EP +EHY CMV+LL RAG +   Y L+ +M  +PD ++WG+LL
Sbjct: 301 LKEGXHWFNRMKCEFIVEPGIEHYLCMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLL 359

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H N+ LGE  A  L   + +N G YVLLSNIYA  G WD V R+R LMK +G+ K
Sbjct: 360 GACRIHKNVELGEISARKLFELDXSNCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLK 419

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG S +EL  ++H  L GD  HP+ ++IY  L++ N  L+  GY+P   +VLHD+ E++
Sbjct: 420 APGFSIVELKGRIHVLLVGDKEHPQHEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEE 479

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L VHSEKLAVAFG++++ PG+ I I+KNLR+C DC+ V KLI K   R+I++RD  
Sbjct: 480 KGMVLRVHSEKLAVAFGIMNSVPGSIIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSK 539

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G+CSCGDYW
Sbjct: 540 RFHHFKEGSCSCGDYW 555



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 50/280 (17%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK---------VEPNEVTA 110
           +R LFD++ ++ VV W  +I G  Q+  A +A+ +F+ +L E+         V  + V  
Sbjct: 32  SRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLL 91

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             V+SA  ++G       +H  +   R  +  V VG  L++ Y+K G +  A+ VFD +N
Sbjct: 92  GCVVSAFSKLGWRGVTEGVHGLV-IKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMN 149

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---------------------------- 202
           + D   WNS+I  YA +G   +A  +F +M +                            
Sbjct: 150 ESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHHQ 209

Query: 203 -IRLKPSDITFIG--LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
            I++   D  F+G  ++        V   R+ F+ MK +      V+ +  MV      G
Sbjct: 210 VIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVK-----NVKSWTAMVAGYGMHG 264

Query: 260 QVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALG 296
           + +EA ++   M    ++P+ + + ++L AC   G +  G
Sbjct: 265 RAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEG 304



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 31/187 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+  ++V TS+VD+Y +   V  A K F  M  +++ S T M+            
Sbjct: 210 VIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVA----------- 258

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                               GY  HG A EA+ +F +M+   V+PN +T V+VL+AC   
Sbjct: 259 --------------------GYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHA 298

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G L+ G    + ++    ++  ++    ++++  + G L    L+ +     D ++W S+
Sbjct: 299 GMLKEGXHWFNRMKCEFIVEPGIEHYLCMVDLLGRAGYLXCYGLIKEMNAKPDFIIWGSL 358

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 359 LGACRIH 365


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 303/479 (63%), Gaps = 5/479 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
            + ++Y   S++   +   DV   +++ A + + SL       T ++  YAK   +  A 
Sbjct: 287 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 346

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+ + ++D+  W V++ GYAQ G   +A+  F +M  E V+PNE T  + LS C +I 
Sbjct: 347 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 406

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+SGR +HS    +     ++ V +AL++MY+KCG ++DA +VFD +  +D V WN++I
Sbjct: 407 TLDSGRQLHSMAIKAGQ-SGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTII 465

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GY+ HG G  AL+ F  M      P ++TFIG+LSAC+H GL+ EG++ FN++   Y I
Sbjct: 466 CGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGI 525

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P +EHY CMV++L RAG+  E    + +MK+  + ++W T+LGAC++HGNI  GE+ A 
Sbjct: 526 TPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAM 585

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L          Y+LLSN++AA G WD V  VR LM  +GV+KEPGCS +E++ +VH FL
Sbjct: 586 KLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFL 645

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           + D  HPK +EI++ L++++  L + GY P T  VLH++ +++KQ  L  HSE+LA+AF 
Sbjct: 646 SHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFA 705

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ST    +I+I KNLR+C DCH   K IS+ T +++++RD N FHHF NG+CSC ++W
Sbjct: 706 LLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 159/307 (51%), Gaps = 12/307 (3%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATM------PQRSLVSLTTMLTCYAKQGEVAA 59
            + ++Y   S++   A  GD+   + +   +      P   L    +++  YAK G    
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHL--WNSLVNVYAKCGSANY 244

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  +F ++ E+DVV W  +I G+   G  +  L +F +MLAE   PN  T +++L +C  
Sbjct: 245 ACKVFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSS 303

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +  ++ G+ +H+ I  + ++  N  VGTAL++MY+K   L+DA  +F+R+  +D+  W  
Sbjct: 304 LSDVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTV 362

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           ++ GYA  G G+ A++ F +M R  +KP++ T    LS C+    ++ GR+  ++M  + 
Sbjct: 363 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKA 421

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
                +     +V++ ++ G VE+A ++V D  +  D+V W T++     HG      K 
Sbjct: 422 GQSGDMFVASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKA 480

Query: 300 AEYLISQ 306
            E ++ +
Sbjct: 481 FEAMLDE 487



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 39/314 (12%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDD 66
           ++  SL+   A  GD    E + A + +    S        +T Y K   V      F  
Sbjct: 91  FIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKA 150

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  +++   N ++ G+      ++   +  ++L E  EPN  T +++L  C   G L  G
Sbjct: 151 MMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEG 210

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + IH  +  S  I  +  +  +L+N+Y+KCGS   A  VF  + ++DVV W ++I G+  
Sbjct: 211 KAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA 269

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------HAGLVN---EGRRFF 232
            G+G   L++FN+M      P+  TFI +L +C+           HA +V    +G  F 
Sbjct: 270 EGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 328

Query: 233 NT-MKDEYAIEPKVEHYGCMVNLL---------------SRAGQVEEAYKLVMDMK---I 273
            T + D YA    +E    + N L               ++ GQ E+A K  + M+   +
Sbjct: 329 GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV 388

Query: 274 EPDSVLWGTLLGAC 287
           +P+     + L  C
Sbjct: 389 KPNEFTLASSLSGC 402



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 120/277 (43%), Gaps = 11/277 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  Y K   +  AR + ++M  +DV  WN  +          EA+ LF  M   ++ 
Sbjct: 28  SSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIR 87

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N+    +++SA   +G    G  IH+ +      + ++ +  A + MY K  S+++   
Sbjct: 88  LNQFIFASLISAAASLGDNHYGESIHACV-CKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F  +  +++   N+++ G+          ++  ++     +P+  TFI +L  CA  G 
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +NEG+     +     I P    +  +VN+ ++ G    A K+  ++  E D V W  L+
Sbjct: 207 LNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALI 264

Query: 285 GACRLHGNIALGEKIAEYLISQNLA---NSGTYVLLS 318
                 G +A G      + +Q LA   N   Y  +S
Sbjct: 265 T-----GFVAEGYGSGLRIFNQMLAEGFNPNMYTFIS 296


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/516 (41%), Positives = 299/516 (57%), Gaps = 41/516 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ------- 54
            K  L   L+V   LV +Y + G +  A  +   M +R +VS  +++  YA+        
Sbjct: 168 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDAL 227

Query: 55  ---------------GEVAA---------------ARVLFDDMEEKDVVCWNVMIDGYAQ 84
                          G +A+                + +F  M +K +V WNVMI  Y +
Sbjct: 228 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 287

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
           + +  EA+ L+  M A+  EP+ V+  +VL ACG   AL  G+ IH YIE  + I  N+ 
Sbjct: 288 NAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP-NLL 346

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +  ALI+MY+KCG L  AR VF+ +  +DVV W +MI  Y   G G DA+ LF++M    
Sbjct: 347 LENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSG 406

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           L P  I F+  L+AC+HAGL+ EGR  F  M D Y I P++EH  CMV+LL RAG+V+EA
Sbjct: 407 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 466

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
           YK + +M +EP+  +WG LLGACR+H N  +G   A+ L       SG YVLLSNIYA  
Sbjct: 467 YKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 526

Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
           G W+ V  +R +MK KG++K PG S++E++  +H FL GD  HP+S EIY  L+ +   +
Sbjct: 527 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKM 586

Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS---IKIVKNLRVCP 441
           K  GYVP ++  LHD+ E+ K+  L VHSEKLA+ F L++T+   S   I+I KNLR+C 
Sbjct: 587 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICG 646

Query: 442 DCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           DCH   KLIS+ T R+I++RD NRFH F  G CSC 
Sbjct: 647 DCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 682



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YA   +VA AR +FD++ E++V+  NVMI  Y  +G   E + +F  M +  V+P+
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   VL AC   G +  G+ IH        +   + VG  L++MY KCG L +ARLV 
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSA-TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 199

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D ++ +DVV WNS++ GYA +    DAL++  EM  +++     T   LL A ++    N
Sbjct: 200 DEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 259

Query: 227 ---EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
                  FF   K           +  M+ +  +     EA +L   M+    EPD+V  
Sbjct: 260 VMYVKDMFFKMGKKSLV------SWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSI 313

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTL 336
            ++L AC     ++LG+KI  Y+  + L  +   +LL N    +YA  G  D    V   
Sbjct: 314 TSVLPACGDTSALSLGKKIHGYIERKKLIPN---LLLENALIDMYAKCGCLDRARDVFEN 370

Query: 337 MKEKGV 342
           MK + V
Sbjct: 371 MKSRDV 376



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 4/187 (2%)

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L +K  P E TA  +         L++ R +HS I  S +++ N  +G  L+  Y+    
Sbjct: 33  LDQKNSPKE-TAFMLGQVLDTYPDLKTLRTVHSRI-ISEDLRYNSSLGVKLMRAYASLKD 90

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +  AR VFD + +++V++ N MI  Y  +GF ++ +Q+F  MC   +KP   TF  +L A
Sbjct: 91  VATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKA 150

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+ +G +  G++   +   +  +   +     +V++  + G + EA +LV+D     D V
Sbjct: 151 CSCSGNIVIGKKIHGSAT-KVGLSSTLFVGNGLVSMYGKCGFLSEA-RLVLDEMSRRDVV 208

Query: 279 LWGTLLG 285
            W +L+ 
Sbjct: 209 SWNSLVA 215


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/437 (44%), Positives = 275/437 (62%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
           + +   YAK G V  AR +FD M  +D V W  M++ Y   G   E   LF  ML  + V
Sbjct: 206 SALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGV 265

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNE T   VL AC Q      GR +H  +  S     +    +AL+ MYSKCG +  A 
Sbjct: 266 RPNEFTYAGVLRACAQFAVESFGRQVHGRMAKS-GTGDSCFAESALLRMYSKCGDMGSAV 324

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+ +   D+V W ++I GYA +G  ++AL+ F+   R  +KP  +TF+G+LSACAHAG
Sbjct: 325 RVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAG 384

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV++G   F+++K++Y IE   +HY C+++LLSR+GQ E A K++ +M ++P+  LW +L
Sbjct: 385 LVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASL 444

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LG CR+H N+ L  + AE L      N  TYV L+NIYA++G +D V  VR +M+ KG+ 
Sbjct: 445 LGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGIT 504

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K P  S IE+  +VH FL GD  HPK+ EIY +L+++   +  EGYV   + VLHD+ ++
Sbjct: 505 KMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDE 564

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  +  HSE+LAVAFG+I+T  G+ IK+ KNLR+C DCHA  KLIS+   R I++RD 
Sbjct: 565 QKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDS 624

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G CSC DYW
Sbjct: 625 NRFHHFKDGICSCRDYW 641



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 150/316 (47%), Gaps = 42/316 (13%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGE-VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           LF+++    + S  T+++  ++    + +AR LFD M ++D   W+ ++ GY +HG    
Sbjct: 85  LFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEA 144

Query: 91  ALVLFRRMLAEKVEP---NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQ 144
           AL L+RRM  E       NE TA + L+A        +GR +H ++   R I     +  
Sbjct: 145 ALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVR-RGIDAAGGDAV 203

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           + +AL +MY+KCG + DAR VFDR+  +D V W +M+  Y   G G +  +LF  M R R
Sbjct: 204 LWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTR 263

Query: 205 -LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD-------------------------- 237
            ++P++ T+ G+L ACA   + + GR+    M                            
Sbjct: 264 GVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323

Query: 238 ----EYAIEPKVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLH 290
               E   +P +  +  +++  ++ GQ EEA   + + +   I+PD V +  +L AC   
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHA 383

Query: 291 GNIALGEKIAEYLISQ 306
           G +  G +I   +  Q
Sbjct: 384 GLVDKGLEIFHSIKEQ 399



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 41/222 (18%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +  ++L+ +Y++ GD+ SA ++F  M +  LVS T +++ Y                   
Sbjct: 305 FAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGY------------------- 345

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                       AQ+G   EAL  F   L   ++P+ VT V VLSAC   G ++ G  I 
Sbjct: 346 ------------AQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIF 393

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH-- 187
             I+    I+        +I++ S+ G  + A +++ +     +  +W S++ G  +H  
Sbjct: 394 HSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKN 453

Query: 188 -GFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNE 227
            G  + A +   E     ++P +  T++ L +  A  GL +E
Sbjct: 454 VGLARRAAEALFE-----IEPENPATYVTLANIYASVGLFDE 490


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/460 (42%), Positives = 294/460 (63%), Gaps = 5/460 (1%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD---DMEEKDVVCWNVMID 80
           G  L    + A + + + V   +++  Y K GE+ +A  +FD   D  E     W+ M+ 
Sbjct: 277 GRQLHGRVVVAVLEEDAFVG-CSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVA 335

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           GY Q+G   EAL  FRRML E V   +    +V SAC   G +E GR +H ++E   + +
Sbjct: 336 GYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGH-R 394

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            +  + +A+++MYSK GSL+DA  +F     K+V +W +M+  YA HG G+ AL++F+ M
Sbjct: 395 FDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRM 454

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
              ++ P++IT + +LSAC+H+GLV++G  +FN M++EY I P  EHY CMV+L  RAG 
Sbjct: 455 KAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGL 514

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           +++A   + + KI  ++V+W TLL ACRLH +I   +  +E L+     ++G+YVL+SN+
Sbjct: 515 LDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNM 574

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           YA    W    ++R+ MKE+ V+K+PG S I L N VH F+A D  HP+S EIY  LE++
Sbjct: 575 YATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKL 634

Query: 381 NGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
              LK  GY  +T +V+HDI E+Q++ SL+ HSEKLA+AFG+IST  GT+++I KNLRVC
Sbjct: 635 MERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVC 694

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   K I++ T R+I++RD  RFHHF +G CSC D+W
Sbjct: 695 EDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 147/287 (51%), Gaps = 6/287 (2%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ +  +++D+YA+ GD   A + F  M Q+   S   ++    + G++  A  LFD+  
Sbjct: 160 DVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESS 219

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +DV  WN ++ G  +HG   EAL   ++M+   V  +  T   V +  G + + + GR 
Sbjct: 220 LRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQ 279

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYA 185
           +H  +  +  ++ +  VG +L++MY KCG ++ A  +FDR +D        W++M+ GY 
Sbjct: 280 LHGRVVVA-VLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYV 338

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
            +G  ++AL+ F  M R  +         + SACA+AG+V +GR+    + ++       
Sbjct: 339 QNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFV-EKLGHRFDA 397

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
                +V++ S++G +E+A ++    + + +  LW T+L +   HG 
Sbjct: 398 PLASAIVDMYSKSGSLEDACRIFRSAQTK-NVALWTTMLCSYASHGQ 443



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSAC 117
           A  +FD    + +  W  +I G A+ G   + +  F  ML E     PN      VL  C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +G +ESGR IH +I  S  +  +V +  A+++MY+KCG    AR  F  +  KD   W
Sbjct: 137 AGLGDVESGRRIHGWILRS-GVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSW 195

Query: 178 NSMIVGYAMHGFGKDALQLFNE 199
           N +I      G    A QLF+E
Sbjct: 196 NIVIRACLQDGDLVGATQLFDE 217



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  +++++VD+Y++ G +  A ++F +   +++   TTML  YA                
Sbjct: 396 DAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYAS--------------- 440

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                           HG    AL +F RM AEK+ PNE+T VAVLSAC   G +  G  
Sbjct: 441 ----------------HGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYH 484

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             + ++    I  N +    ++++Y + G L  A+  + +     + VVW +++    +H
Sbjct: 485 YFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLH 544



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM---CRIRLKPSDITFIGL 215
           L +A  VFD    + +  W S+I G A  G   D ++ F EM   C     P+     G+
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGA-TAPNAFVLAGV 132

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L  CA  G V  GRR    +     + P V     ++++ ++ G    A +    M  + 
Sbjct: 133 LRCCAGLGDVESGRRIHGWILRS-GVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA-QK 190

Query: 276 DSVLWGTLLGACRLHGNI 293
           D+  W  ++ AC   G++
Sbjct: 191 DATSWNIVIRACLQDGDL 208


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 303/479 (63%), Gaps = 5/479 (1%)

Query: 6    LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
             + ++Y   S++   +   DV   +++ A + + SL       T ++  YAK   +  A 
Sbjct: 528  FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 587

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             +F+ + ++D+  W V++ GYAQ G   +A+  F +M  E V+PNE T  + LS C +I 
Sbjct: 588  TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 647

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             L+SGR +HS    +     ++ V +AL++MY+KCG ++DA +VFD +  +D V WN++I
Sbjct: 648  TLDSGRQLHSMAIKAGQ-SGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTII 706

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             GY+ HG G  AL+ F  M      P ++TFIG+LSAC+H GL+ EG++ FN++   Y I
Sbjct: 707  CGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGI 766

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P +EHY CMV++L RAG+  E    + +MK+  + ++W T+LGAC++HGNI  GE+ A 
Sbjct: 767  TPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAM 826

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L          Y+LLSN++AA G WD V  VR LM  +GV+KEPGCS +E++ +VH FL
Sbjct: 827  KLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFL 886

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            + D  HPK +EI++ L++++  L + GY P T  VLH++ +++KQ  L  HSE+LA+AF 
Sbjct: 887  SHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFA 946

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ST    +I+I KNLR+C DCH   K IS+ T +++++RD N FHHF NG+CSC ++W
Sbjct: 947  LLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 153/300 (51%), Gaps = 7/300 (2%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDD 66
           +   SLV      GD+   E + A + +            ++T Y K G V     +F+ 
Sbjct: 432 FTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEA 491

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
              +D++ WN ++ G+  +   +  L +F +MLAE   PN  T +++L +C  +  ++ G
Sbjct: 492 TTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 551

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + +H+ I  + ++  N  VGTAL++MY+K   L+DA  +F+R+  +D+  W  ++ GYA 
Sbjct: 552 KQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 610

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
            G G+ A++ F +M R  +KP++ T    LS C+    ++ GR+  ++M  +      + 
Sbjct: 611 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMF 669

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
               +V++ ++ G VE+A ++V D  +  D+V W T++     HG      K  E ++ +
Sbjct: 670 VASALVDMYAKCGCVEDA-EVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 728



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 43/314 (13%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL+V ++LVDLYA+ G+++ AE++F  MP+++ VS                         
Sbjct: 263 DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVS------------------------- 297

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 WN +++G+AQ G A + L LF RM   ++  ++ T   VL  C   G L +G+ 
Sbjct: 298 ------WNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQI 351

Query: 129 IHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
           +HS       I++  +    +   L++MYSKCG   DA  VF R+ D DVV W+++I   
Sbjct: 352 VHSLA-----IRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCL 406

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
              G  ++A ++F  M    + P+  T   L+SA    G +  G      +  +Y  E  
Sbjct: 407 DQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVC-KYGFEYD 465

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
                 +V +  + G V++  + V +     D + W  LL     +     G +I   ++
Sbjct: 466 NTVCNALVTMYMKIGSVQDGCR-VFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQML 524

Query: 305 SQNLANSGTYVLLS 318
           ++   N   Y  +S
Sbjct: 525 AEGF-NPNMYTFIS 537



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YAK G    A  +F ++ E+DVV W  +I G+   G  + A+ LF  M  E VE 
Sbjct: 168 SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEA 227

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKD 161
           NE T    L AC     LE G+ +H     +  IKV    ++ VG+AL+++Y+KCG +  
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVH-----AEAIKVGDFSDLFVGSALVDLYAKCGEMVL 282

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VF  +  ++ V WN+++ G+A  G  +  L LF  M    +  S  T   +L  CA+
Sbjct: 283 AERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCAN 342

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           +G +  G +  +++      E       C+V++ S+ G   +A K+ + ++ +PD V W 
Sbjct: 343 SGNLRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWS 400

Query: 282 TLL 284
            ++
Sbjct: 401 AII 403



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 154/360 (42%), Gaps = 70/360 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   + D ++S  LVD+Y++ G    A K+F  +    +VS + ++TC  ++G+     
Sbjct: 357 IRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ----- 411

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                     + EA  +F+RM    V PN+ T  +++SA   +G
Sbjct: 412 --------------------------SREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG 445

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  G  IH+ +      + +  V  AL+ MY K GS++D   VF+   ++D++ WN+++
Sbjct: 446 DLYYGESIHACV-CKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALL 504

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------HAGLVN---E 227
            G+  +      L++FN+M      P+  TFI +L +C+           HA +V    +
Sbjct: 505 SGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLD 564

Query: 228 GRRFFNT-MKDEYAIEPKVEHYGCMVNLL---------------SRAGQVEEAYKLVMDM 271
           G  F  T + D YA    +E    + N L               ++ GQ E+A K  + M
Sbjct: 565 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 624

Query: 272 K---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS---NIYAAIG 325
           +   ++P+     + L  C     +  G ++    I      SG   + S   ++YA  G
Sbjct: 625 QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA--GQSGDMFVASALVDMYAKCG 682



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 29/221 (13%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            +L  C   G L  G+ IH  +  S  I  +  +  +L+N+Y+KCGS   A  VF  + +
Sbjct: 133 GMLRTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           +DVV W ++I G+   G+G  A+ LF EM R  ++ ++ T+   L AC+    +  G++ 
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 232 FNTMKDEYAIEPKVEHY------GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
                  +A   KV  +        +V+L ++ G++  A ++ + M  + ++V W  LL 
Sbjct: 252 -------HAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLN 303

Query: 286 A--------------CRLHGNIALGEKIAEYLISQNLANSG 312
                          CR+ G+     K     + +  ANSG
Sbjct: 304 GFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSG 344


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/440 (44%), Positives = 283/440 (64%), Gaps = 4/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV L  ++    +      A+++F+ M  +DVV WN MI GY +     EAL LFR M  
Sbjct: 76  LVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNK 135

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP++ T  +V++ C ++GAL+  +W+H  +   R I++N  + +ALI+MYSKCG ++
Sbjct: 136 SNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKR-IELNFILSSALIDMYSKCGKIQ 194

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+ +FD V   +V +WN+MI G A+HG   DA+++F +M    + P  ITF+G+L+AC+
Sbjct: 195 TAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACS 254

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GLV EGR++F+ M+  Y+++P +EHYG MV+LL RAG +EEA+ ++  M +EPD V+W
Sbjct: 255 HCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIW 314

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGACR +    LGE     + + +   SG YVLLSNIY +   WD    V  +MK+K
Sbjct: 315 RALLGACRTYKKPELGEAA---MANISRLRSGDYVLLSNIYCSQKRWDTAQGVWEMMKKK 371

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV K  G S  E +  +H F AGD  HP+++ IY MLE +    K  GYVP T +V  D+
Sbjct: 372 GVHKVRGKSCFEWAGFLHPFKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDV 431

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLA+A+G++ T  G  ++I KNLR+C DCH+  K++S+   R I++
Sbjct: 432 SEEEKEGNLYHHSEKLALAYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIV 491

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDR RFH F NG CSCGDYW
Sbjct: 492 RDRIRFHRFENGLCSCGDYW 511



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 102/184 (55%), Gaps = 5/184 (2%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSA----EKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           K +++ D Y   S+++  A+ G +  A    E L     + + +  + ++  Y+K G++ 
Sbjct: 135 KSNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQ 194

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
            A+ +FD ++  +V  WN MI G A HGLA +A+ +F +M  E V P+ +T + +L+AC 
Sbjct: 195 TAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACS 254

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVW 177
             G ++ GR     + +  +++ +++   A++++  + G L++A  +   +  + DVV+W
Sbjct: 255 HCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIW 314

Query: 178 NSMI 181
            +++
Sbjct: 315 RALL 318


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 283/440 (64%), Gaps = 2/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V+ T+++  YAK G +  A  +F  M  ++ V W+ MI G+AQ+G ++EAL LFR M A
Sbjct: 244 VVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQA 303

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P+    V+ L AC  IG L+ GR +H +I   R    N  +GTA I+MYSKCGSL 
Sbjct: 304 SGIQPDSGALVSALLACSNIGFLKLGRSVHGFI--VRRFDFNCILGTAAIDMYSKCGSLA 361

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+++F+ ++D+D+++WN+MI     HG G+DAL LF EM    ++P   TF  LLSA +
Sbjct: 362 SAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS 421

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F  M + + I P  +HY C+V+LL+R+G VEEA  L+  MK EP   +W
Sbjct: 422 HSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIW 481

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LL  C  +  + LGE IA+ ++     + G   L+SN+YAA   WD V +VR LMK+ 
Sbjct: 482 VALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDS 541

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCSSIE+    H F+  D  HP+ +EI   + +++  ++  GY+P+T+ V HD+
Sbjct: 542 GSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDL 601

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+  L  HSE+LA+AFGL++T PGT + I+KNLRVC DCH   K ISK   R+I++
Sbjct: 602 EEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVV 661

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSC DYW
Sbjct: 662 RDAKRFHHFKDGVCSCRDYW 681



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 141/297 (47%), Gaps = 36/297 (12%)

Query: 44  LTTMLTCYAKQGEVAAAR-VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           ++++   YA+ G++AAA   L        +  WN +I  +++ G    AL +FR  L   
Sbjct: 45  ISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAIIAAHSRRGSPASALRVFR-ALPPA 103

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+  T    LSAC ++G L  G  +     ++   K +V V ++L+++Y++ G++ DA
Sbjct: 104 ARPDSTTFTLALSACARLGDLRGGESVRDRAFDA-GYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-- 220
             VF R+  +D V W++M+ G+   G   DA+Q++  M    +K  ++  IG++ AC   
Sbjct: 163 VKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAA 222

Query: 221 ---------HAGLVNEGRRF----FNTMKDEYA----IEPKVEHYGCMVNL--------- 254
                    H  L+  G R       ++ D YA    ++     +G MV+          
Sbjct: 223 RNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMI 282

Query: 255 --LSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
              ++ GQ +EA +L  +M+   I+PDS    + L AC   G + LG  +  +++ +
Sbjct: 283 SGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR 339


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/446 (47%), Positives = 280/446 (62%), Gaps = 39/446 (8%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
           MP+R+LVS  +ML+ + K G V  A  LF +M  +DVV WN M+  YAQ G  NEAL LF
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            +M A                                      + VN  VGTAL++MY+K
Sbjct: 61  DQMQA--------------------------------------VGVNSIVGTALVDMYAK 82

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG +  A  VF+ +  KDV+ WN++I G A+ G  K+A QLF EM    ++P+DITF+ +
Sbjct: 83  CGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAM 142

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           LSAC+HAG+V+EG++  + M   Y IEPKVEHYGC+++LL+RAG +EEA +L+  M +EP
Sbjct: 143 LSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEP 202

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           +    G LL  CR+HGN  LGE + + LI+    +SG Y+LLSNIYAA   WD   +VR 
Sbjct: 203 NPCALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRN 262

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQ 394
           LMK  G+ K PG S IEL   VH F+AGD  HP+S +IY  L EI+  LK A GY   T 
Sbjct: 263 LMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTG 322

Query: 395 IVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFT 454
             L D+ E+ K+++L VHSEKLA+A+GL+      +I+IVKNLRVC DCH V KLISK  
Sbjct: 323 NGLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVY 382

Query: 455 GRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G +I++RDRNRFHHF +G CSC D+W
Sbjct: 383 GGEIIVRDRNRFHHFEDGECSCLDFW 408



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 34/216 (15%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +++L    S++  + + G+V  A  LF+ MP R +VS  +ML CYA+ G+   A  LFD 
Sbjct: 3   ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 62

Query: 67  ---------------------------------MEEKDVVCWNVMIDGYAQHGLANEALV 93
                                            ME KDV+ WN +I G A  G   EA  
Sbjct: 63  MQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQ 122

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           LF+ M    VEPN++T VA+LSAC   G ++ G+ +   + +S  I+  V+    +I++ 
Sbjct: 123 LFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLL 182

Query: 154 SKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
           ++ G L++A  L+     + +     +++ G  +HG
Sbjct: 183 ARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHG 218


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 312/513 (60%), Gaps = 36/513 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYA--------- 52
           VK  L++D+++   L+  YA  G +    K+F  M +R++VS T+++  YA         
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217

Query: 53  --------------------KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
                               K G + AA+ LFD+  ++++V +N ++  YA+ GLA EAL
Sbjct: 218 SLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREAL 277

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQI-----GALESGRWIHSYIENSRNIKVNVQVGT 147
            +   ML +   P+ VT ++ +SA  Q+     G +  G W+H+YIE +  I  ++++ T
Sbjct: 278 AILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKN-GIPCDMRLNT 336

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL++M+++CG  + A  VF+++ ++DV  W + I   AM G G+ A  LFN+M    +KP
Sbjct: 337 ALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKP 396

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
             + F+ +L+AC+H G V +G   F+ M+D + I P++EHYGCMV+LL RAG + EA+ L
Sbjct: 397 DVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDL 455

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
           +  M +EP+ V+WG+LL ACR+H N+ +    AE +       +G +VLLSNIYA+ G W
Sbjct: 456 IKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKW 515

Query: 328 DGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE 387
             VARVR  ++EKGV+K PG SS++++  +HEF +GD  HP+   I +ML+E+N      
Sbjct: 516 TDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDA 575

Query: 388 GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVF 447
           G++P    VL D+ E++K+  L  HSEKLA+AFGLI+T     I++VKNLR+C DCH+  
Sbjct: 576 GHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFA 635

Query: 448 KLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           K+ S    R+I++RD NRFH F  G CSC DYW
Sbjct: 636 KMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 126/276 (45%), Gaps = 21/276 (7%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N +I GY+  GL  EA++L+ RML   V PN  T   VLS C +I A   G  +H  +  
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
              ++ +V +   LI+ Y++CG +     VF+ +++++VV W S+I GYA     K+A+ 
Sbjct: 160 -MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVS 218

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           LF EM       + +    L+      G ++  +R F+   D   +      Y  +++  
Sbjct: 219 LFFEML------NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVL-----YNTILSNY 267

Query: 256 SRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +R G   EA  ++ +M  +   PD V   + + A     ++  G+    Y +   +  +G
Sbjct: 268 ARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNG 327

Query: 313 T------YVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                     L +++A  G+     +V   M E+ V
Sbjct: 328 IPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDV 363



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query: 158 SLKDARLVF-----DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           SL  AR  F     D  +D  + + NS+I GY+  G G++A+ L+  M  + + P+  TF
Sbjct: 75  SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
             +LS C       EG +   ++  +  +E  V    C+++  +  G ++  +K+   M 
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVV-KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMS 193

Query: 273 IEPDSVLWGTLL 284
            E + V W +L+
Sbjct: 194 -ERNVVSWTSLI 204


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/469 (42%), Positives = 305/469 (65%), Gaps = 2/469 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+D+Y +     +A ++F  M  +++V+  +++  Y + GEV AA   F+ M EK+
Sbjct: 373 ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKN 432

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIH 130
           +V WN +I    Q  +  EA+ +F  M +++ V  + VT +++ SACG +GAL+  +WI+
Sbjct: 433 IVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIY 492

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            YIE +R I+++V++GT L++M+S+CG  + A  +F+ + ++DV  W + I   AM G  
Sbjct: 493 YYIEKNR-IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNV 551

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           + A++LFNEM    LKP  + FIG L+AC H GLV +G+  FN+M+  + + P+  HYGC
Sbjct: 552 ERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGC 611

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           MV+LL RAG +EEA +L+ DM  EP+ V+W +LL ACR+ GN+ +    AE +       
Sbjct: 612 MVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPER 671

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
           +G+YVLLSN+YA+ G W+ +A+VR  MKEKG++K PG S I++  K HEF +GD  HP+ 
Sbjct: 672 TGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEM 731

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
           ++I  ML+E++      G+VP    VL D+ E++K   L  HSEKLA+AFGLIS+  GT+
Sbjct: 732 RKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTT 791

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           I+IVKNLRVC  CH+  K  SK   R+I++RD NRFH    G CSC D+
Sbjct: 792 IRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 113/194 (58%), Gaps = 11/194 (5%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
           A+ LF    Q SLV        YA+ GE+  AR +FD+M E++VV W  MI GYA+   A
Sbjct: 165 AKDLFV---QNSLVHF------YAECGELDCARKVFDEMSERNVVSWTSMICGYARREFA 215

Query: 89  NEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
            +A+ LF RM+  E V PN VT V V+SAC ++  LE+G  ++ +I +S  I+VN  + +
Sbjct: 216 KDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDS-GIEVNDLMIS 274

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL++MY KC ++  A+ +FD     ++ + N+M   Y   G  K+AL + N M    ++P
Sbjct: 275 ALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRP 334

Query: 208 SDITFIGLLSACAH 221
             I+ +  +S+C+ 
Sbjct: 335 DRISMLSAISSCSQ 348



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 139/308 (45%), Gaps = 46/308 (14%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N +I GYA  GL  EA++LF RM+   + P++ T    LS C +     +G  IH  I 
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
                K ++ V  +L++ Y++CG L  AR VFD +++++VV W SMI GYA   F KDA+
Sbjct: 161 KMDYAK-DLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAV 219

Query: 195 QLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD------EYAIEPKVEH 247
            LF  M R   + P+ +T + ++SACA    +  G + ++ ++D      +  I   V+ 
Sbjct: 220 DLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDM 279

Query: 248 Y------------------------GCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLW 280
           Y                          M +   R G  +EA     L+MD  I PD +  
Sbjct: 280 YMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISM 339

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQ------NLANSGTYVLLSNIYAAIGNWDGVARVR 334
            + + +C    NI  G+    Y++        N+ N+     L ++Y      D   R+ 
Sbjct: 340 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA-----LIDMYMKCHRQDTAFRIF 394

Query: 335 TLMKEKGV 342
             M  K V
Sbjct: 395 DRMSNKTV 402



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-T 234
           ++NS+I GYA  G  K+A+ LF  M    + P   TF   LS CA +     G +     
Sbjct: 100 MYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLI 159

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +K +YA +  V++   +V+  +  G+++ A K V D   E + V W +++
Sbjct: 160 IKMDYAKDLFVQN--SLVHFYAECGELDCARK-VFDEMSERNVVSWTSMI 206


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/468 (44%), Positives = 286/468 (61%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++V   A  GD+ +AE LF   P+++   L T M++ Y   G V  A   F  M  +++V
Sbjct: 144 AMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLV 203

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSY 132
            WN ++ GY ++  A++AL +F+ M+ +  V+PN  T  +VL  C  + AL  GR +H +
Sbjct: 204 SWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQW 263

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  NV VGT+L++MY KCG L DA  VFD ++ KD+V WN+MI GYA HG G  
Sbjct: 264 CMK-LPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQ 322

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A++LF +M    + P  IT + +L+AC H GL + G + F TM++ Y IEP+++HY CMV
Sbjct: 323 AIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMV 382

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +LL RAG +E A  ++  M  EP    +GTLL ACR++ N+   E  A  LI Q+  N+G
Sbjct: 383 DLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAG 442

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKE 372
            YV L+NIYA    W  V+RVR  MK+  V K PG S +E+    HEF + D  HP+   
Sbjct: 443 AYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGL 502

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I+  L+ +   +KA GYVP     LHD+ +  K   L  HSEKLA+AFGLIST PG +++
Sbjct: 503 IHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLR 562

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I KNLR+C DCH   KLISK   R+I++RD  RFHHF  G CSCGDYW
Sbjct: 563 IFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 142/292 (48%), Gaps = 22/292 (7%)

Query: 20  YARGGDVL---SAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           YA+   ++    A +LF ++P    VS  T+L+C+   G++  AR +F  M  KDV  WN
Sbjct: 53  YAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWN 112

Query: 77  VMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
            M+ G +++G + EA  +FR M +   V  N +  VA L+  G +GA E          N
Sbjct: 113 TMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAM--VAALACSGDMGAAE------DLFRN 164

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           +   K +  + TA+++ Y   G+++ A   F  +  +++V WN+++ GY  +    DAL+
Sbjct: 165 APE-KTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALR 223

Query: 196 LFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVN 253
           +F  M    + +P+  T   +L  C++   +  GR+     MK    +   V     +++
Sbjct: 224 VFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMK--LPLSRNVTVGTSLLS 281

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAE 301
           +  + G + +A K+  +M  + D V W  ++     HG     I L EK+ +
Sbjct: 282 MYCKCGDLNDACKVFDEMSTK-DIVAWNAMISGYAQHGGGMQAIKLFEKMKD 332



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L +++ V TSL+ +Y + GD+  A K+F  M  + +V+   M++ YA+ G      
Sbjct: 265 MKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGG----- 319

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                       +A+ LF +M  E V P+ +T +AVL+AC   G
Sbjct: 320 --------------------------GMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTG 353

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             + G      ++ +  I+  +   + ++++  + G L+ A
Sbjct: 354 LCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERA 394


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/444 (44%), Positives = 285/444 (64%), Gaps = 2/444 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + +L+  T ++  Y+K G +  A  +F+ M++++V+ W  M+ G AQ+G A +AL LF +
Sbjct: 363 ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQ 422

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E +  N VT V+++ +C  +G+L+ GR IH ++        ++   TAL++MY+KCG
Sbjct: 423 MQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LGFAFDIVNMTALVDMYAKCG 481

Query: 158 SLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            +  A  +F   +  KDVV+WNSMI GY MHG G  A+ ++++M    LKP+  TF+ LL
Sbjct: 482 KINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLL 541

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SAC+H+ LV +G   FN+M+ ++ I P  +HY C+V+LLSRAG+ EEA  L+  M  +P 
Sbjct: 542 SACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPG 601

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
           + +   LL  CR H NI LG + ++ L++ +  N G Y++LSNIYA    WD V  +R L
Sbjct: 602 TAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGL 661

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           M+ +G++K PG S +E  N VH F AGD  HP  +EIY  LE +   ++  GYVP T  V
Sbjct: 662 MRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCV 721

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
           L D+ E+ K   L  HSE+LA+AFGL++T  G+ I+I KNLRVC DCH V K ISK   R
Sbjct: 722 LRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKR 781

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++RD NRFHHF NG CSCGDYW
Sbjct: 782 EIIVRDANRFHHFSNGECSCGDYW 805



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 157/277 (56%), Gaps = 5/277 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++ LT+ +  Y+K G++ +AR +F  M  +++V WN MI G  ++GL  E+  LF R++ 
Sbjct: 266 ILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVR 325

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
                +  T V++L  C Q  +L +G+ +H      R+ + N+ + TA++++YSKCGSLK
Sbjct: 326 SSGGFDLTTIVSLLQGCSQTASLATGKILHGCA--IRSFESNLILSTAIVDLYSKCGSLK 383

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A  VF+R+ D++V+ W +M+VG A +G  +DAL+LF +M    +  + +TF+ L+ +CA
Sbjct: 384 QATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCA 443

Query: 221 HAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           H G +  GR     + +  +A +  + +   +V++ ++ G++  A ++     I  D VL
Sbjct: 444 HLGSLKRGRSIHGHLFRLGFAFD--IVNMTALVDMYAKCGKINLAERIFSHGSISKDVVL 501

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           W +++    +HG+      I   +I + L  + T  L
Sbjct: 502 WNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFL 538



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 44/327 (13%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++M++   K G++  A+ +FD M  KDVVCWN +I GY Q G  + A  LF  M    ++
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ +T  +++ ACG IG L+ G+ +H Y+     +  ++ V T+ ++MYSK G ++ AR 
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLG-LGLGNDILVLTSFVDMYSKMGDIESARW 287

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF ++  +++V WN+MI G   +G   ++  LF+ + R        T + LL  C+    
Sbjct: 288 VFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTAS 347

Query: 225 VNEG--------RRF--------------------------FNTMKDEYAIEPKVEHYGC 250
           +  G        R F                          FN MKD   I      +  
Sbjct: 348 LATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVIT-----WTA 402

Query: 251 MVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           M+  L++ G  E+A +L   M+   I  +SV + +L+ +C   G++  G  I  +L    
Sbjct: 403 MLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG 462

Query: 308 LA-NSGTYVLLSNIYAAIGNWDGVARV 333
            A +      L ++YA  G  +   R+
Sbjct: 463 FAFDIVNMTALVDMYAKCGKINLAERI 489



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 119/249 (47%), Gaps = 7/249 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T ++  Y+    + AAR +FD   + K ++C N M+ GY Q G   E L LF  M +  +
Sbjct: 68  TKLVKAYSDLRSLEAARYVFDQFFQPKGLLC-NAMLCGYLQSGRYRETLELFGLMRSRNL 126

Query: 104 EPNEVTAVAVLSACGQIGALESG-RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           E +  +    L AC      E G   I S +E  + ++ N  VG+++I+   K G + +A
Sbjct: 127 EVDSCSCTFALKACASSLDYEMGMEIISSAVE--KGMEKNRFVGSSMISFLVKFGKIGEA 184

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD + +KDVV WNS+I GY   G    A QLF EM    +KPS IT   L+ AC   
Sbjct: 185 QRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGI 244

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G +  G+     +     +   +      V++ S+ G +E A  +   M    + V W  
Sbjct: 245 GNLKLGKCMHGYVLG-LGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTR-NLVSWNA 302

Query: 283 LLGACRLHG 291
           ++  C  +G
Sbjct: 303 MISGCVRNG 311



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 46/222 (20%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V T L+  YS   SL+ AR VFD+      ++ N+M+ GY   G  ++ L+LF  M    
Sbjct: 66  VATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRN 125

Query: 205 LKPSDITFIGLLSACAHA-----------------------------------GLVNEGR 229
           L+    +    L ACA +                                   G + E +
Sbjct: 126 LEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQ 185

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGA 286
           R F+ M ++      V  +  ++    +AG  + A++L  +M    I+P  +   +L+ A
Sbjct: 186 RVFDGMPNK-----DVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQA 240

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLS--NIYAAIGN 326
           C   GN+ LG+ +  Y++   L N    VL S  ++Y+ +G+
Sbjct: 241 CGGIGNLKLGKCMHGYVLGLGLGND-ILVLTSFVDMYSKMGD 281


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/435 (45%), Positives = 290/435 (66%), Gaps = 2/435 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK G++ +AR +FD    K V  W  +I GY   G   EAL+LF+++L   ++PN
Sbjct: 25  LLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIKPN 84

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T   +LSAC  +G+L+ G+ I  YI  S   + + QV T+LI+M+SKCGS+  A  VF
Sbjct: 85  GATLATILSACADLGSLDMGKEIEEYIL-SNGFQSDRQVQTSLIHMFSKCGSIGKAISVF 143

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLV 225
           +R++DKD+  W+SMI GYA+HG  ++AL LF++M  I+ +KP  + F  +L AC+H GLV
Sbjct: 144 ERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLV 203

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +G +FF +M+ ++ I P VEHY C+V+LL RAGQ E A K +  M ++  + +W   L 
Sbjct: 204 EDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAPFLS 263

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC  H N+ LGE  A  L+  N  +   YVL++N+Y ++G W   A  R+LM ++G+ K 
Sbjct: 264 ACTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTSMGKWKEAAVTRSLMIDRGLVKA 323

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S +E++  VH F+AGD  H +S +IY  LEEIN  L   GYVP+T  V+HD+  ++K
Sbjct: 324 PGWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEAGYVPETDTVIHDLEREEK 383

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           + +L+VHSE+LA+AFGLIST+ G++++I+KN R C DCH+  K ISK TGR +++RD +R
Sbjct: 384 EEALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALKFISKITGRHLIVRDGSR 443

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G C+C D+W
Sbjct: 444 FHHFESGKCTCKDFW 458



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           T+++  ++K G +  A  +F+ + +KD+  W+ MI+GYA HG+A EAL LF +ML  +++
Sbjct: 124 TSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEI 183

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +P+ V   ++L AC  +G +E G      ++    I  +V+    L+++  + G  + A
Sbjct: 184 KPDAVVFTSILLACSHVGLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELA 242


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/480 (41%), Positives = 300/480 (62%), Gaps = 33/480 (6%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +K   + DL+VS+ ++D+Y + GD+ +A +LF                     GE++   
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELF---------------------GEIS--- 1161

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                     D V W  MI GY ++G  + AL ++  M    V+P+E T   ++ A   + 
Sbjct: 1162 -------RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            ALE G+ IH+ +    +  ++  VGT+L++MY KCGS++DA  VF +++ + VV WN+M+
Sbjct: 1215 ALEQGKQIHANVVK-LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            +G A HG   +AL LF  M    ++P  +TFIG+LSAC+H+GL +E  ++F+ M   Y I
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P++EHY C+V+ L RAG+++EA  ++  M  +  + ++  LLGACR  G+    +++A+
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L++ + ++S  YVLLSNIYAA   WD V   R +MK K V+K+PG S I++ NKVH F+
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEG-YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
              D  HP++  IY  +E++   ++ EG YVP T   L D+ E++K+ +L  HSEKLA+AF
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAF 1513

Query: 421  GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            GLIST P  +I+++KNLRVC DCH+  K ISK T R+I++RD NRFHHF NGTCSCGDYW
Sbjct: 1514 GLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 131/259 (50%), Gaps = 14/259 (5%)

Query: 40   SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
            S VS T ++  Y+K G++  A  L     + D+  WN ++ GY +   + +AL  F  M 
Sbjct: 1033 SFVS-TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 100  AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSK 155
               +  +E+T    + A G +  L+ G+ I +Y      IK+    ++ V + +++MY K
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYA-----IKLGFNNDLWVSSGVLDMYIK 1146

Query: 156  CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
            CG + +A  +F  ++  D V W +MI GY  +G    AL +++ M    ++P + TF  L
Sbjct: 1147 CGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATL 1206

Query: 216  LSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
            + A +    + +G++   N +K +Y+++  V     +V++  + G V++AY++   M + 
Sbjct: 1207 IKASSCLTALEQGKQIHANVVKLDYSLDHFVG--TSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 275  PDSVLWGTLLGACRLHGNI 293
               V W  +L     HG++
Sbjct: 1265 K-VVFWNAMLLGLAQHGHV 1282



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 55/333 (16%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAK---QGEV- 57
            VK   + DL+VS +LV++Y + G V  A  LF  MP+R  V    ML  Y +   Q E  
Sbjct: 744  VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 58   -----------------------------------------AAARVLFDDMEEKDVVCWN 76
                                                     A A  +F   +  ++  WN
Sbjct: 804  RFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 77   VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
              +  +   G    A+  F+ +L   +  + VT V +LSA      L+ G  IH+ +  S
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS 923

Query: 137  RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
                V V V  +L+NMYSK G +  A   F    + D++ WN+MI  YA +    +A+  
Sbjct: 924  SFAPV-VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 197  FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEH----YGCM 251
            F ++ R  LKP   T   +L AC+     +EG  F   +    YAI+  + +       +
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 252  VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++L S+ G+++EA + ++  K + D   W  ++
Sbjct: 1040 IDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 46   TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +++  Y+K G V AA   F +  E D++ WN MI  YAQ+ L  EA+  FR +L + ++P
Sbjct: 934  SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKP 993

Query: 106  NEVTAVAVLSAC--GQIGALES-GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            ++ T  +VL AC  G  G   + G  +H Y      I  +  V TALI++YSK G + +A
Sbjct: 994  DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSF-VSTALIDLYSKGGKMDEA 1052

Query: 163  RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
              +     D D+  WN+++ GY      + AL+ F+ M  + +   +IT    + A    
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 223  GLVNEGRRFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
              + +G++        YAI+    +       ++++  + G +  A +L  ++   PD V
Sbjct: 1113 INLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEV 1166

Query: 279  LWGTLL 284
             W T++
Sbjct: 1167 AWTTMI 1172



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 24/291 (8%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN-----E 90
           +P R L +   ++T Y+K G + +AR +FD   ++D+V WN ++  YAQ   ++     E
Sbjct: 643 LPDRYLTN--NLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLE 700

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
              LF  +         +T   +L  C   G ++    +H Y       ++++ V  AL+
Sbjct: 701 GFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI-GFELDLFVSGALV 759

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           N+Y K G +  ARL+FD++ ++D V+WN M+  Y  + F  +AL+ F+   R    P D 
Sbjct: 760 NIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXP-DF 818

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS---------RAGQV 261
           + +  +    ++ + N  +R    +K  YA+  K+  +    N+ +          AGQ+
Sbjct: 819 SNLHCVIGGVNSDVSNNRKRHAEQVK-AYAM--KMFPFDQGSNIFAWNKKLTEFLHAGQI 875

Query: 262 EEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
             A   +K ++   I  DSV    +L A     ++ LGE+I   +I  + A
Sbjct: 876 VAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G+  H+ I  S ++  +  +   LI MYSKCGSL  AR VFD+ +D+D+V WNS++ 
Sbjct: 627 LKLGKRAHARIVTSGDLP-DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 183 GYAMHGFGK-----DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            YA           +  +LF  +       + +T   LL  C  +G V            
Sbjct: 686 AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG---- 741

Query: 238 EYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            YA++   E      G +VN+  + G V +A +L+ D   E D+VLW  +L A
Sbjct: 742 -YAVKIGFELDLFVSGALVNIYCKYGLVGQA-RLLFDKMPERDAVLWNVMLKA 792


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/480 (41%), Positives = 300/480 (62%), Gaps = 33/480 (6%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +K   + DL+VS+ ++D+Y + GD+ +A +LF                     GE++   
Sbjct: 1126 IKLGFNNDLWVSSGVLDMYIKCGDMPNALELF---------------------GEIS--- 1161

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                     D V W  MI GY ++G  + AL ++  M    V+P+E T   ++ A   + 
Sbjct: 1162 -------RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLT 1214

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            ALE G+ IH+ +    +  ++  VGT+L++MY KCGS++DA  VF +++ + VV WN+M+
Sbjct: 1215 ALEQGKQIHANVVK-LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            +G A HG   +AL LF  M    ++P  +TFIG+LSAC+H+GL +E  ++F+ M   Y I
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGI 1333

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P++EHY C+V+ L RAG+++EA  ++  M  +  + ++  LLGACR  G+    +++A+
Sbjct: 1334 TPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVAD 1393

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L++ + ++S  YVLLSNIYAA   WD V   R +MK K V+K+PG S I++ NKVH F+
Sbjct: 1394 KLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEG-YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
              D  HP++  IY  +E++   ++ EG YVP T   L D+ E++K+ +L  HSEKLA+AF
Sbjct: 1454 VDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAF 1513

Query: 421  GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            GLIST P  +I+++KNLRVC DCH+  K ISK T R+I++RD NRFHHF NGTCSCGDYW
Sbjct: 1514 GLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 131/259 (50%), Gaps = 14/259 (5%)

Query: 40   SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
            S VS T ++  Y+K G++  A  L     + D+  WN ++ GY +   + +AL  F  M 
Sbjct: 1033 SFVS-TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 100  AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSK 155
               +  +E+T    + A G +  L+ G+ I +Y      IK+    ++ V + +++MY K
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYA-----IKLGFNNDLWVSSGVLDMYIK 1146

Query: 156  CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
            CG + +A  +F  ++  D V W +MI GY  +G    AL +++ M    ++P + TF  L
Sbjct: 1147 CGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATL 1206

Query: 216  LSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
            + A +    + +G++   N +K +Y+++  V     +V++  + G V++AY++   M + 
Sbjct: 1207 IKASSCLTALEQGKQIHANVVKLDYSLDHFVG--TSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 275  PDSVLWGTLLGACRLHGNI 293
               V W  +L     HG++
Sbjct: 1265 K-VVFWNAMLLGLAQHGHV 1282



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 55/333 (16%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAK---QGEV- 57
            VK   + DL+VS +LV++Y + G V  A  LF  MP+R  V    ML  Y +   Q E  
Sbjct: 744  VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 58   -----------------------------------------AAARVLFDDMEEKDVVCWN 76
                                                     A A  +F   +  ++  WN
Sbjct: 804  RFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWN 863

Query: 77   VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
              +  +   G    A+  F+ +L   +  + VT V +LSA      L+ G  IH+ +  S
Sbjct: 864  KKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKS 923

Query: 137  RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
                V V V  +L+NMYSK G +  A   F    + D++ WN+MI  YA +    +A+  
Sbjct: 924  SFAPV-VPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 197  FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEH----YGCM 251
            F ++ R  LKP   T   +L AC+     +EG  F   +    YAI+  + +       +
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTAL 1039

Query: 252  VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            ++L S+ G+++EA + ++  K + D   W  ++
Sbjct: 1040 IDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 121/246 (49%), Gaps = 14/246 (5%)

Query: 46   TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +++  Y+K G V AA   F +  E D++ WN MI  YAQ+ L  EA+  FR +L + ++P
Sbjct: 934  SLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKP 993

Query: 106  NEVTAVAVLSAC--GQIGALES-GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            ++ T  +VL AC  G  G   + G  +H Y      I  +  V TALI++YSK G + +A
Sbjct: 994  DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSF-VSTALIDLYSKGGKMDEA 1052

Query: 163  RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
              +     D D+  WN+++ GY      + AL+ F+ M  + +   +IT    + A    
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 223  GLVNEGRRFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
              + +G++        YAI+    +       ++++  + G +  A +L  ++   PD V
Sbjct: 1113 INLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RPDEV 1166

Query: 279  LWGTLL 284
             W T++
Sbjct: 1167 AWTTMI 1172



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 24/291 (8%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN-----E 90
           +P R L +   ++T Y+K G + +AR +FD   ++D+V WN ++  YAQ   ++     E
Sbjct: 643 LPDRYLTN--NLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLE 700

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
              LF  +         +T   +L  C   G ++    +H Y       ++++ V  AL+
Sbjct: 701 GFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI-GFELDLFVSGALV 759

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           N+Y K G +  ARL+FD++ ++D V+WN M+  Y  + F  +AL+ F+   R    P D 
Sbjct: 760 NIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFP-DF 818

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS---------RAGQV 261
           + +  +    ++ + N  +R    +K  YA+  K+  +    N+ +          AGQ+
Sbjct: 819 SNLHCVIGGVNSDVSNNRKRHAEQVK-AYAM--KMFPFDQGSNIFAWNKKLTEFLHAGQI 875

Query: 262 EEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
             A   +K ++   I  DSV    +L A     ++ LGE+I   +I  + A
Sbjct: 876 VAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G+  H+ I  S ++  +  +   LI MYSKCGSL  AR VFD+ +D+D+V WNS++ 
Sbjct: 627 LKLGKRAHARIVTSGDLP-DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 183 GYAMHGFGK-----DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            YA           +  +LF  +       + +T   LL  C  +G V            
Sbjct: 686 AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHG---- 741

Query: 238 EYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            YA++   E      G +VN+  + G V +A +L+ D   E D+VLW  +L A
Sbjct: 742 -YAVKIGFELDLFVSGALVNIYCKYGLVGQA-RLLFDKMPERDAVLWNVMLKA 792


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/445 (43%), Positives = 283/445 (63%), Gaps = 10/445 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ---------HGLANEALVLF 95
             +L  +A+ G +A+ R +FD +   D+  WN ++  YA+            A+  L +F
Sbjct: 395 AALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMF 454

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            RML+  ++PNE+T VAV+ ACG++GA+  G W H+Y    R + VN  V TAL+ MY+ 
Sbjct: 455 VRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVK-RRLAVNCIVATALVEMYAG 513

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L  A  VF   +D+D   +N+M+ G A+HG G+ AL LF+ M    +    +T + +
Sbjct: 514 CGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSV 573

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + ACAHAGLV+EG  +F+ M+ E+ IEP +EHYGCMV++LSRAG++ +A KL+  M I P
Sbjct: 574 MCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVP 633

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           ++ ++ +L+ AC +HG + LG+K+   L+     +SG +VL+SN YA    WD   + R 
Sbjct: 634 NAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARK 693

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            MK  G+ K PG S ++++  +HEFL GD  HP SKEIY M+E+I   L   G+   T  
Sbjct: 694 EMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSS 753

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            L D+ E+ K ++L  HSE+LA+AF LI++ PG  I+I+KNLRVC DCH   KL+S+  G
Sbjct: 754 ALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYG 813

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I+MRDR RFHHF +G CSCGD+W
Sbjct: 814 REIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 9/93 (9%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM--------HGFGKDA-LQ 195
           +G AL++++++CG +   R VFDR+ + D+  WN+++  YA              DA L+
Sbjct: 393 LGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILE 452

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           +F  M  + +KP++IT + ++ AC   G V+ G
Sbjct: 453 MFVRMLSLAIKPNEITLVAVIGACGELGAVSHG 485



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 34/210 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  L  +  V+T+LV++YA  G +  AE++FA    R       ML   A  G     
Sbjct: 492 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHG----- 546

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                   HG A  AL LF RM  E V  + VT ++V+ AC   
Sbjct: 547 ------------------------HGRA--ALSLFDRMHGEGVPVDGVTVLSVMCACAHA 580

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ G      +E    I+ +++    +++M S+ G L DA +L+       +  ++ S
Sbjct: 581 GLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRS 640

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           +I    +HG  +   ++  E+  +RL+P D
Sbjct: 641 LIRACGIHGKLELGKKMIAEL--MRLEPDD 668


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/480 (41%), Positives = 293/480 (61%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K   D D++V +SL+D+YA    +  + K+F                           
Sbjct: 196 AIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVF--------------------------- 228

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
               D   + D V WN M+ GYAQ+G   EAL +FRRML   V P  VT  +++ A G +
Sbjct: 229 ----DSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNL 284

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             L  G+ +H+Y+  +R    N+ + ++LI+MY KCG++  AR VF+ +   D+V W +M
Sbjct: 285 SLLRLGKQLHAYLIRAR-FNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAM 343

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I+GYA+HG   +A  LF  M    +KP+ ITF+ +L+AC+HAGLV+ G ++FN+M ++Y 
Sbjct: 344 IMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYG 403

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
             P +EH   + + L RAG ++EAY  + +MKI+P S +W TLL ACR+H N  L E++A
Sbjct: 404 FVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVA 463

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + +      + G++V+LSN+Y+A G W+  A++R  M+ KG++KEP CS IE+ NK+H F
Sbjct: 464 KKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVF 523

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +A D  HP    I   L   +  +  +GYVP  + VL DI E+QK+  L  HSEKLA+ F
Sbjct: 524 IAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVF 583

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G+IST PGT+I+++KNLRVC DCH   K ISK   R+I++RD NRFH F +G CSCGD+W
Sbjct: 584 GIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 13/236 (5%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +FD+M E+D V WN +I G A+H    EAL + R M  +   P+  T   VL    + 
Sbjct: 124 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 121 GALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             ++ G  +H Y I+N      +V VG++LI+MY+ C  +  +  VFD  +D D V+WNS
Sbjct: 184 ADIKRGMVVHGYAIKN--GFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNS 241

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           M+ GYA +G  ++AL +F  M +  ++P  +TF  L+ A  +  L+  G++        Y
Sbjct: 242 MLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQL-----HAY 296

Query: 240 AIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            I  +          ++++  + G V+ A ++   ++  PD V W  ++    LHG
Sbjct: 297 LIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYALHG 351


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/439 (43%), Positives = 287/439 (65%), Gaps = 3/439 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +TT+L  YA+ G V+ A  +F  M +K++V W+ MI  YA++ +  +AL LF+ M+ E  
Sbjct: 217 MTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEAC 276

Query: 104 E--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +  PN +T V+VL AC  + ALE G+ +H+Y+   R +   + V   LI MY +CG +  
Sbjct: 277 DTVPNPITMVSVLQACASLAALEHGKLVHAYVLR-RGLDSTLPVLNTLITMYGRCGEIST 335

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            + VFD +  +DV+ WNS+I  Y MHG GK A+Q+F  M    + PS ITFI +L AC+H
Sbjct: 336 GQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSH 395

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV E +  F +M ++Y I P++EHY CMV++L RA +++EA +L+ +M  +P   +WG
Sbjct: 396 AGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWG 455

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG+CR+H N+ L E+ +  L      N+G YVLLS+IYA    W+ V RVR  ++ +G
Sbjct: 456 SLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRG 515

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           +QK P CS IE+  K++  ++ +  +P+ +E+   L  +   +K +GYVPQT +V +D+ 
Sbjct: 516 LQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLD 575

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+  +  HS KLAVAFGLI+T  G  I+I  NLR+C DCHA  K +SKFT R+I++R
Sbjct: 576 EEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLR 635

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFH F +G CSCGDYW
Sbjct: 636 DVNRFHCFKDGVCSCGDYW 654



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 137/305 (44%), Gaps = 21/305 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y   G V  A  +FD+  EK +  WN +    A      + LVL+ +M    + 
Sbjct: 113 TKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIP 172

Query: 105 PNEVTAVAVLSACG----QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            N  T   VL AC      I  L  G+ IH++I      + +V V T L+++Y++ G + 
Sbjct: 173 SNRFTYTYVLKACVVSELSICPLRKGKEIHAHILR-HGYEGHVHVMTTLLDVYARFGYVS 231

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN----EMCRIRLKPSDITFIGLL 216
            A  VF  + DK++V W++MI  YA +     AL+LF     E C     P+ IT + +L
Sbjct: 232 YASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDT--VPNPITMVSVL 289

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            ACA    +  G +  +       ++  +     ++ +  R G++    + V D   + D
Sbjct: 290 QACASLAALEHG-KLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQR-VFDYMKKRD 347

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNWDGVARV 333
            + W +L+    +HG   LG+K  +  I +N+ N G   +Y+    +  A  +   V   
Sbjct: 348 VISWNSLISIYGMHG---LGKKAIQ--IFENMINRGVSPSYITFITVLCACSHAGLVEEA 402

Query: 334 RTLMK 338
           + L +
Sbjct: 403 KILFE 407



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 1/149 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +L  L T++T Y + GE++  + +FD M+++DV+ WN +I  Y  HGL  +A+ +F  M+
Sbjct: 316 TLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMI 375

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              V P+ +T + VL AC   G +E  + +   + N   I   ++    ++++  +   L
Sbjct: 376 NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRL 435

Query: 160 KDARLVFDRVNDKD-VVVWNSMIVGYAMH 187
            +A  +   ++ K    VW S++    +H
Sbjct: 436 DEAIELIQNMDFKPGPTVWGSLLGSCRIH 464



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 43/287 (14%)

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           ++L  +  P + T   ++++C +  +L  G  +H  +  S  +  +  + T LINMY   
Sbjct: 64  QLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGS-GLDQDPYLATKLINMYCDL 122

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           GS+  A  VFD   +K + VWN++    AM   G+D L L+ +M  I +  +  T+  +L
Sbjct: 123 GSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVL 182

Query: 217 SACA---------------HAGLVNEGR----RFFNTMKDEYA---------------IE 242
            AC                HA ++  G         T+ D YA                +
Sbjct: 183 KACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPD 242

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE-----PDSVLWGTLLGACRLHGNIALGE 297
             +  +  M+   ++     +A +L   M +E     P+ +   ++L AC     +  G+
Sbjct: 243 KNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGK 302

Query: 298 KIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            +  Y++ + L +S   VL  L  +Y   G      RV   MK++ V
Sbjct: 303 LVHAYVLRRGL-DSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDV 348


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/436 (43%), Positives = 281/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK   +  A V F+ +  +D+  W V+I  YAQ     +AL  FR+M  E V+
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T    LS C  + +LE G+ +HS +  S ++  ++ VG+AL++MY+KCG +++A  
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS-DMFVGSALVDMYAKCGCMEEAEA 673

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +D + WN++I GYA +G G  AL  F  M    + P  +TF G+LSAC+H GL
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGL 733

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG+  FN+M  ++ I P V+H  CMV++L R G+ +E    +  M++  ++++W T+L
Sbjct: 734 VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GA ++H N+ LGEK A  L         +Y+LLSNI+A  G WD V RVR+LM  KGV+K
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS +E + +VH F++ D  HP+ +EI++ L+E++  L +  YVP+T+ VLH++GE +
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSE+LA+ F LIST     I+I KNLR+C DCH V K IS  T ++I++RD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG CSC D+W
Sbjct: 974 RFHHFKNGACSCNDFW 989



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 3/242 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YAK GE+  A  +F  M E++ V WNV+++GYAQ G     L LF  M+   V+
Sbjct: 252 SALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVK 311

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NE T   VL  C     L+ G+ IHS I      + N  +G  L++MYSKCG   DA  
Sbjct: 312 CNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC-GYEGNEFIGCGLVDMYSKCGLAIDAIG 370

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +   D+VVW+++I      G  +++++LF+ M      P+  T   LLSA  + G 
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGN 430

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G+     +  +Y  E  V     +V +  + G V +  KL   M ++ D + W   L
Sbjct: 431 LQYGQSIHACVW-KYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYL 488

Query: 285 GA 286
             
Sbjct: 489 SG 490



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YAK    A AR++   M ++DVV W  +I G    G AN+++ LF+ M  E + P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE T    L AC    AL+ G+ +H+       + +++ VG+AL+++Y+KCG ++ A  +
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQ-AFKLGLLLDLFVGSALVDLYAKCGEIELASKM 270

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  + +++ V WN ++ GYA  G     L+LF  M  + +K ++ T   +L  CA++  +
Sbjct: 271 FIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNL 330

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G +  +++  +   E   E  GC +V++ S+ G   +A  +   +K +PD V+W  L+
Sbjct: 331 KQG-QVIHSLIIKCGYEGN-EFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 40/254 (15%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYA-----KQGEVAAARVL--- 63
           L++ YA+ GDV    KLF +M +  +     +LTT+L   A     KQG+V  + ++   
Sbjct: 285 LLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344

Query: 64  ---------------------------FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
                                      F  +++ D+V W+ +I    Q G + E++ LF 
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH 404

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            M      PN+ T  ++LSA    G L+ G+ IH+ +      + +V V  AL+ MY K 
Sbjct: 405 LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKN 463

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G + D   +++ + D+D++ WN+ + G    G     L +F  M      P+  TFI +L
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISIL 523

Query: 217 SACAHAGLVNEGRR 230
            +C+    V+ GR+
Sbjct: 524 GSCSCLFDVHYGRQ 537



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D++V ++LVD+YA+ G +  AE LF  + +R  ++  T                      
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNT---------------------- 688

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
              ++C      GYAQ+G  N+AL  FR ML E + P+ VT   +LSAC   G +E G+ 
Sbjct: 689 ---IIC------GYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE 739

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
             + +     I   V     ++++  + G   +      ++   ++ ++W +++    MH
Sbjct: 740 HFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMH 799


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/448 (45%), Positives = 283/448 (63%), Gaps = 3/448 (0%)

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
           T  +RS    T +L  Y K G+V  A  +F  ++ KD+V W+ M+ GYAQ G    A+ +
Sbjct: 426 TNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKI 485

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           F  +    V+PNE T  ++L+ C    A +  G+  H +   SR +  ++ V +AL+ MY
Sbjct: 486 FSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMY 544

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           +K G ++ A  VF R  +KD+V WNSMI GYA HG    AL +F EM + ++K   +TFI
Sbjct: 545 AKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFI 604

Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
           G+ +AC HAGLV EG ++F+ M  +  I P  EH  CMV+L SRAGQ+E+A K++ +M  
Sbjct: 605 GVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPN 664

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
              S +W T+L ACR+H    LG   AE +I+    +S  YVLLSN+YA  G+W   A+V
Sbjct: 665 LAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKV 724

Query: 334 RTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393
           R LM E+ V+KEPG S IE+ NK + FLAGD  HP   +IYM LE+++  LK  GY P T
Sbjct: 725 RKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDT 784

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
             VL DI ++ K+  L  HSE+LA+AFGLI+T  G+ + I+KNLRVC DCH V KLI+K 
Sbjct: 785 SYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKI 844

Query: 454 TGRKIMMRDRNRFHHF-VNGTCSCGDYW 480
             R+I++RD NRFHHF  +G CSCGD+W
Sbjct: 845 EEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 32/220 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF    D+ V TSLVD Y +G +                           K G     R
Sbjct: 124 IKFGFLDDVSVGTSLVDTYMKGSNF--------------------------KDG-----R 152

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M+E++VV W  +I GYA++ L  E L LF RM  E  +PN  T  A L    + G
Sbjct: 153 NVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEG 212

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
               G  +H+ +  +  +   + V  +LIN+Y KCG+++ AR++FD+   K VV WNSMI
Sbjct: 213 VGGRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            GYA +G   +AL +F  M    ++ S+ +F  ++  CA+
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 17/254 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T ++  Y+K   +  A  LF +     +VV W  MI G+ Q+    EA+ LF  M  + V
Sbjct: 338 TALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGV 397

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNE T   +L+A   I   E    +H+ +  + N + +  VGTAL++ Y K G + +A 
Sbjct: 398 RPNEFTYSVILTALPVISPSE----VHAQVVKT-NYERSSTVGTALLDAYVKLGKVDEAA 452

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHA 222
            VF  +++KD+V W++M+ GYA  G  + A+++F+E+ +  +KP++ TF  +L+ C A  
Sbjct: 453 KVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATT 512

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
             + +G++F       +AI+ +++   C    ++ + ++ G +E A + V   + E D V
Sbjct: 513 ASMGQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGHIESAEE-VFKRQREKDLV 566

Query: 279 LWGTLLGACRLHGN 292
            W +++     HG 
Sbjct: 567 SWNSMISGYAQHGQ 580



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 35/328 (10%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G V  AR+LFD  E K VV WN MI GYA +GL  EAL +F  M    V  
Sbjct: 238 SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRL 297

Query: 106 NEVTAVAVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           +E +  +++  C  +  L     +H S ++       N++  TAL+  YSKC ++ DA  
Sbjct: 298 SESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR--TALMVAYSKCMAMLDALR 355

Query: 165 VFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA--- 220
           +F       +VV W +MI G+  +   ++A+ LF+EM R  ++P++ T+  +L+A     
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS 415

Query: 221 ----HAGLVNEGRRFFNT----MKDEYAIEPKVEH---------------YGCMVNLLSR 257
               HA +V       +T    + D Y    KV+                +  M+   ++
Sbjct: 416 PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475

Query: 258 AGQVEEAYKLVMDMK---IEPDSVLWGTLLGAC-RLHGNIALGEKIAEYLISQNLANS-G 312
           AG+ E A K+  ++    ++P+   + ++L  C     ++  G++   + I   L +S  
Sbjct: 476 AGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLC 535

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEK 340
               L  +YA  G+ +    V    +EK
Sbjct: 536 VSSALLTMYAKKGHIESAEEVFKRQREK 563



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           A    +  A  LFD   ++D   +  ++ G+++ G   EA  LF  +    +E +     
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFS 101

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFD 167
           +VL     +     GR +H      + IK     +V VGT+L++ Y K  + KD R VFD
Sbjct: 102 SVLKVSATLCDELFGRQLHC-----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFD 156

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
            + +++VV W ++I GYA +   ++ L LF  M     +P+  TF   L   A  G+   
Sbjct: 157 EMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGR 216

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
           G +  +T+  +  ++  +     ++NL  + G V +A +++ D       V W +++   
Sbjct: 217 GLQ-VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA-RILFDKTEVKSVVTWNSMISGY 274

Query: 288 RLHG 291
             +G
Sbjct: 275 AANG 278



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 32/187 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  LD  L VS++L+ +YA+ G + SAE++F    ++ LVS  +M++ YA+ G+     
Sbjct: 526 IKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQ----- 580

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                     A +AL +F+ M   KV+ + VT + V +AC   G
Sbjct: 581 --------------------------AMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAG 614

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSM 180
            +E G      +     I    +  + ++++YS+ G L+ A  V D + N     +W ++
Sbjct: 615 LVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTI 674

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 675 LAACRVH 681


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/468 (44%), Positives = 290/468 (61%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++V  +A   D+ +AE+ F   P++   V  T M++ Y   G V  A   F+ M  +++V
Sbjct: 196 AMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 255

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
            WN ++ GY ++  A++AL LFR M+ E  V+PN  T  +VL  C  + AL  G+ IH +
Sbjct: 256 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 315

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  N+ VGT+L++MY KCG L  A  +F  ++ +DVV WN+MI GYA HG GK+
Sbjct: 316 CMK-LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 374

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+ LF  M    ++P+ ITF+ +L+AC H GL + G R F  M++ Y IEP+V+HY CMV
Sbjct: 375 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 434

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +LL RAG++E A  L+  M  EP    +GTLL ACR++ N+   E  A  LI ++  ++G
Sbjct: 435 DLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAG 494

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKE 372
            YV L+NIYA    WD V+RVR  MK+  V K PG S IE+   +HEF + D  HP+   
Sbjct: 495 AYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYL 554

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I+  L ++   +KA GYVP    VLHD+ E  K   L  HSEKLA++FGLIST PG +++
Sbjct: 555 IHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLR 614

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I KNLRVC DCH   K+ISK   R+I++RD  RFHHF  G CSCGDYW
Sbjct: 615 IFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 24/298 (8%)

Query: 20  YARG-GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
           YAR  G +  A  LF  +P    VS  T+L+C+   G+   AR LF  M  +DVV WN M
Sbjct: 107 YARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTM 166

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS--ACGQ-IGALESGRWIHSYIEN 135
           + G ++ G   EA  +F   LA  V  N V+  A++S  AC + + A E   W  +  E 
Sbjct: 167 VSGLSKSGAVEEAKAVF---LAMPVR-NSVSWNAMVSGFACSRDMSAAE--EWFRNAPE- 219

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
               K +  + TA+++ Y   G++  A   F+ +  +++V WN+++ GY  +    DAL+
Sbjct: 220 ----KGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALR 275

Query: 196 LFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVN 253
           LF  M R   ++P+  T   +L  C++   +  G++     MK    +   +     +V+
Sbjct: 276 LFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK--LPLSRNLTVGTSLVS 333

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAEYLISQN 307
           +  + G +  A KL  +M    D V W  ++     HG+    I L E++ +  +  N
Sbjct: 334 MYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPN 390



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L V TSLV +Y + GD+ SA KLF  M  R +V+   M++ YA+        
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ-------- 368

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   EA+ LF RM  E VEPN +T VAVL+AC   G
Sbjct: 369 -----------------------HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 405

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             + G      ++    I+  V   + ++++  + G L+ A
Sbjct: 406 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 446


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/440 (45%), Positives = 287/440 (65%), Gaps = 7/440 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G +  AR +F+ + E+DVV    +I GYAQ GL  EAL LF R+  E + 
Sbjct: 150 SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS 209

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT  ++L+A   + AL+ G+ +HS++     +   V +  +LI+MYSKCG+L  AR 
Sbjct: 210 SNYVTYASLLTALSGLAALDHGKQVHSHVLRC-ELPFYVVLQNSLIDMYSKCGNLNYARK 268

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAG 223
           +F+ +  + V+ WN+M+VGY+ HG G + ++LF  M    ++KP  +TF+ +LS C+H G
Sbjct: 269 IFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGG 328

Query: 224 LVNEGRRFFNTM---KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           L ++G   F+ M    DE  IE  +EHYGC+++LL RAG+VEEA++L+  M  EP + +W
Sbjct: 329 LEDKGLEMFDEMMNGGDE--IEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIW 386

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G+LLGACR+H N  +GE +   L+     N+G YV+LSN+YA+ G W+ V  VR LM EK
Sbjct: 387 GSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEK 446

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            V KEPG S IEL   +H F A D  HP+ +E+++ + E+    K  GYVP    VL+D+
Sbjct: 447 AVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDV 506

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+QK+  L  HSEKLA+AFGLIST  G  ++++KNLR+C DCH   K +SK  GR++ +
Sbjct: 507 DEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSI 566

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD+NRFHH   G CSCGDYW
Sbjct: 567 RDKNRFHHVAGGICSCGDYW 586



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 142/248 (57%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +  AR +FD+M E++VV W  MI GY+Q G A+EAL LF +ML    E
Sbjct: 49  TRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTE 108

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   VLS+C      E GR IHS+I   RN + ++ VG++L++MY+K G + +AR 
Sbjct: 109 PNEFTFATVLSSCTGFSGFELGRQIHSHI-FKRNYENHIFVGSSLLDMYAKAGRIHEARG 167

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + ++DVV   ++I GYA  G  ++AL+LF  + R  +  + +T+  LL+A +    
Sbjct: 168 VFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAA 227

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G++   + ++ E      +++   ++++ S+ G +  A K+  +M +    + W  +
Sbjct: 228 LDHGKQVHSHVLRCELPFYVVLQN--SLIDMYSKCGNLNYARKIFNNMPVRT-VISWNAM 284

Query: 284 LGACRLHG 291
           L     HG
Sbjct: 285 LVGYSKHG 292



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 9/214 (4%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L+ C    A+  G+ +H+++  +  +   V + T LI +Y+KC  L  AR VFD + ++
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLP-PVYLSTRLIILYTKCECLGCARHVFDEMRER 74

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           +VV W +MI GY+  GF  +AL LF +M R   +P++ TF  +LS+C        GR+  
Sbjct: 75  NVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIH 134

Query: 233 -NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            +  K  Y  E  +     ++++ ++AG++ EA + V +   E D V    ++     + 
Sbjct: 135 SHIFKRNY--ENHIFVGSSLLDMYAKAGRIHEA-RGVFECLPERDVVSCTAIISG---YA 188

Query: 292 NIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAI 324
            + L E+  E     Q    S  YV  +++  A+
Sbjct: 189 QLGLDEEALELFCRLQREGMSSNYVTYASLLTAL 222



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           VL  E  F  + Q SL+ +      Y+K G +  AR +F++M  + V+ WN M+ GY++H
Sbjct: 238 VLRCELPFYVVLQNSLIDM------YSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKH 291

Query: 86  GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNV 143
           G   E + LF+ M  E KV+P+ VT +AVLS C   G  + G  +   + N  + I+  +
Sbjct: 292 GKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGI 351

Query: 144 QVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
           +    +I++  + G +++A  L+     +    +W S++    +H
Sbjct: 352 EHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVH 396


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/481 (41%), Positives = 307/481 (63%), Gaps = 13/481 (2%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K    + + +S SL+ +YA+ G++ +AE +F++M +R +VS T MLT Y++ G +  A
Sbjct: 421 SLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKA 480

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQ 119
           R  FD M  ++V+ WN M+  Y QHG   + L ++  ML EK V P+ VT V +   C  
Sbjct: 481 REFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCAD 540

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GA + G  I  +      + ++  V  A+I MYSKCG + +AR +FD ++ KD+V WN+
Sbjct: 541 MGANKLGDQITGHTVKV-GLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNA 599

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI GY+ HG GK A+++F++M +   KP  I+++ +LS+C+H+GLV EG+ +F+ +K ++
Sbjct: 600 MITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDH 659

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            + P +EH+ CMV+LL+RAG + EA  L+ +M ++P + +WG LL AC+ HGN  L E  
Sbjct: 660 NVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELA 719

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A++L   +  +SG Y+LL+ IYA  G     A+VR LM++KG++K PG S +E+ NKVH 
Sbjct: 720 AKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHV 779

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F A D+ HP+   I   L+E+   +   GYV +T+ +  +I           HSEKLAVA
Sbjct: 780 FKAEDVSHPQVIAIREKLDELMEKIAQLGYV-RTESLRSEIH----------HSEKLAVA 828

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+++      I I+KNLR+C DCH V KLIS  TGR+ ++RD  RFHHF  G+CSCGDY
Sbjct: 829 FGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDY 888

Query: 480 W 480
           W
Sbjct: 889 W 889



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 170/343 (49%), Gaps = 9/343 (2%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            KF    D  V+T +VD++ R G V  A K F+ + + ++    +ML  YAK   V  A 
Sbjct: 189 TKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHAL 248

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF+ M E+DVV WN+M+   +Q G A EAL +   M    V  +  T  + L+AC ++ 
Sbjct: 249 ELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLS 308

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +L  G+ +H+ +  S    ++  V +A++ +Y+KCG  K+AR VF  + D++ V W  +I
Sbjct: 309 SLGWGKQLHAQVIRSLPC-IDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLI 367

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYA 240
            G+  +G   ++L+LFN+M    +         ++S C++   +   R+  + ++K  + 
Sbjct: 368 GGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHT 427

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
               + +   ++++ ++ G ++ A  +   M+ E D V W  +L A    GNI    K  
Sbjct: 428 RAVVISN--SLISMYAKCGNLQNAESIFSSME-ERDIVSWTGMLTAYSQVGNIG---KAR 481

Query: 301 EYLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGV 342
           E+    +  N  T+  +   Y   G   DG+     ++ EK V
Sbjct: 482 EFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDV 524



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 149/349 (42%), Gaps = 55/349 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           V   L   +++  +L+  Y   G +  A  L    + + ++++   M+  YAK G ++ A
Sbjct: 55  VSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDA 114

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGL---ANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             LF  M  +DV  WN ++ GY Q G    A E+ V  RR  +    PN  T    + +C
Sbjct: 115 EELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRR--SGDSLPNAFTFGCAMKSC 172

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           G +G  E    +   +      + +  V T +++M+ +CG++  A   F ++    V   
Sbjct: 173 GALGWHEVALQLLGLL-TKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCR 231

Query: 178 NSMIVGYAMHGFGKD-ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           NSM+ GYA   +G D AL+LF  M      P                             
Sbjct: 232 NSMLAGYA-KSYGVDHALELFESM------P----------------------------- 255

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNI 293
                E  V  +  MV+ LS++G+  EA  + +DM    +  DS  + + L AC    ++
Sbjct: 256 -----ERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSL 310

Query: 294 ALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
             G+++   +I ++L     YV   +  +YA  G +    RV + ++++
Sbjct: 311 GWGKQLHAQVI-RSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDR 358


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/484 (42%), Positives = 296/484 (61%), Gaps = 7/484 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  +  +L+V ++LV LYA+   V  A  +F  MP R +VS   +LT Y K  E     
Sbjct: 292 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 351

Query: 62  VLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            LF  M       D   WN +I G  ++G + EA+ +FR+M     +PNE+T  ++L AC
Sbjct: 352 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 411

Query: 118 GQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
                L  G+ IH Y+   R+ KV ++   TAL+ MY+KCG L  +R VFD +  KDVV 
Sbjct: 412 SFSENLRMGKEIHCYV--FRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVA 469

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WN+MI+  AMHG GK+AL LF++M   R++P+ +TF G+LS C+H+ LV EG + FN+M 
Sbjct: 470 WNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMG 529

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
            ++ +EP   HY C+V++ SRAG++ EAYK +  M +EP +  WG LL ACR++ N+ L 
Sbjct: 530 RDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELA 589

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           +  A+ L      N G YV L NI      W   ++VR LMKE+G+ K PGCS +++ NK
Sbjct: 590 KISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNK 649

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VH F+ GD  + +S +IY  L+E+   +K  GY P T  VL DI +++K  SL  HSEKL
Sbjct: 650 VHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKL 709

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           AVAFG+++    ++I++ KNLR+C DCH   K +SK  G  I++RD  RFHHF NG CSC
Sbjct: 710 AVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSC 769

Query: 477 GDYW 480
            D W
Sbjct: 770 KDLW 773



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 141/297 (47%), Gaps = 35/297 (11%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   V  AR +FDD+  +DVV W  +   Y + G   + + +FR M    V+PN
Sbjct: 205 LIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 264

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T  ++L AC ++  L+SG+ IH +      + VN+ V +AL+++Y+KC S+++AR+VF
Sbjct: 265 PMTVSSILPACAELKDLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARMVF 323

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  +DVV WN ++  Y  +   +    LF +M R  ++  + T+  ++  C   G   
Sbjct: 324 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENG--- 380

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                                         R+ +  E ++ +  M  +P+ +   ++L A
Sbjct: 381 ------------------------------RSEEAVEMFRKMQKMGFKPNEITISSILPA 410

Query: 287 CRLHGNIALGEKIAEYLISQ-NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           C    N+ +G++I  Y+     + +  +   L  +YA  G+ +    V  +M+ K V
Sbjct: 411 CSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 467



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+   AR LFD++ + D    + +I     HGL+NEA+ ++  +    ++P+    +A  
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 115 SACGQIGALESGRWIHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
            AC   G     + +H   + +R  +  +V VG ALI+ Y KC  ++ AR VFD +  +D
Sbjct: 172 KACAVSGDALRVKEVHD--DATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 229

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           VV W S+   Y   GF +  + +F EM    +KP+ +T   +L ACA    +  G+    
Sbjct: 230 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 289

Query: 234 TMKDEYAIEPKVEHYGC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                  +   V  + C  +V+L ++   V EA ++V D+    D V W  +L A
Sbjct: 290 FAVRHGMV---VNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVSWNGVLTA 340



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 15/150 (10%)

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +G  LI +    G    AR +FD +   D    +++I     HG   +A+++++ +   
Sbjct: 99  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 158

Query: 204 RLKPSDITFIGLLSACAHAG------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
            +KP    F+    ACA +G       V++       M D +     +  YG       +
Sbjct: 159 GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG-------K 211

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
              VE A ++  D+ +  D V W T L +C
Sbjct: 212 CKCVEGARRVFDDLVVR-DVVSW-TSLSSC 239


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 300/481 (62%), Gaps = 41/481 (8%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +++  LD D+YV++SL+D+YA+   V  + ++F            T+LT           
Sbjct: 265 SIRQGLDADIYVASSLIDMYAKCTRVADSCRVF------------TLLT----------- 301

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                   E+D + WN +I G  Q+GL +E L  FR+ML  K++P   +  +++ AC  +
Sbjct: 302 --------ERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHL 353

Query: 121 GALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             L  G+ +H YI  +RN    N+ + ++L++MY+KCG+++ A+ +FDR+  +D+V W +
Sbjct: 354 TTLHLGKQLHGYI--TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTA 411

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI+G A+HG   DA++LF +M    +K        +L+AC+H GLV+E  ++FN+M  ++
Sbjct: 412 MIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDF 464

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I P VEHY  + +LL RAG++EEAY  +  M I P   +W TLL ACR+H NI + EK+
Sbjct: 465 GIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKV 524

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A  ++  +  N+G Y+LL+NIY+A   W   A+ R  M+  G++K P CS IE+ NKV+ 
Sbjct: 525 ANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYA 584

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGD  HP  ++I   +E +   ++ EGYVP T  V HD+ E+QK+  +  HSE+LA+ 
Sbjct: 585 FMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIV 644

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG+I+T  G +I++ KNLRVC DCH   K ISK  GR+I++RD +RFHHF NGTCSCGDY
Sbjct: 645 FGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDY 704

Query: 480 W 480
           W
Sbjct: 705 W 705



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 149/298 (50%), Gaps = 16/298 (5%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR-------GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ 54
           ++  LD DLY   +L+++Y++       G   L A ++F  M +R+    T  +      
Sbjct: 133 IRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL----- 187

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
               + R +F+ M EKD+V WN +I G A++GL  E L + R M    ++P+  T  +VL
Sbjct: 188 -SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVL 246

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
               +   +  G+ IH      + +  ++ V ++LI+MY+KC  + D+  VF  + ++D 
Sbjct: 247 PLIAENVDISRGKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDG 305

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           + WNS+I G   +G   + L+ F +M   ++KP   +F  ++ ACAH   ++ G++    
Sbjct: 306 ISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 365

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +      +  +     +V++ ++ G +  A ++   M++  D V W  ++  C LHG 
Sbjct: 366 ITRN-GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQ 421



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 69/331 (20%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LF+ +     + W  +I  Y  HGL +++L  F  MLA  + P+     +VL +C  +  
Sbjct: 62  LFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-------------------- 162
           L  G  +H YI     +  ++  G AL+NMYSK   L+++                    
Sbjct: 122 LNLGESLHGYIIRV-GLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 163 ------------RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                       R +F+ + +KD+V WN++I G A +G  ++ L++  EM    LKP   
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 211 TFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLL 255
           T   +L   A    ++ G+                  +++ D YA   +V     +  LL
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 256 S---------------RAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGE 297
           +               + G  +E  +    M   KI+P S  + +++ AC     + LG+
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 298 KIAEYLISQNLANSGTYVL--LSNIYAAIGN 326
           ++  Y I++N  +   ++   L ++YA  GN
Sbjct: 361 QLHGY-ITRNGFDENIFIASSLVDMYAKCGN 390


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/437 (46%), Positives = 284/437 (64%), Gaps = 3/437 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y++ G++  AR LFD M  +DVV W  MI G   H L  EA+ LF RML   VE N
Sbjct: 136 LLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVN 195

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIEN-SRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           E T ++VL AC   GAL  GR +H+ +E     I     V TAL++MY+K G +  AR V
Sbjct: 196 EATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKV 255

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD V  +DV VW +MI G A HG  KDA+ +F +M    +KP + T   +L+AC +AGL+
Sbjct: 256 FDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLI 315

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG   F+ ++  Y ++P ++H+GC+V+LL+RAG+++EA   V  M IEPD+VLW TL+ 
Sbjct: 316 REGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIW 375

Query: 286 ACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           AC++HG+    E++ ++L  Q++   +SG+Y+L SN+YA+ G W   A VR LM +KG+ 
Sbjct: 376 ACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLV 435

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S IE+   VHEF+ GD  HP+++EI++ L E+   ++ EGY P+   VL ++ ++
Sbjct: 436 KPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDE 495

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K   L  HSEKLA+A+GLI    G++I+IVKNLR C DCH   KLISK   R I++RDR
Sbjct: 496 EKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDR 555

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF NG CSC DYW
Sbjct: 556 IRFHHFKNGECSCKDYW 572



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 7/160 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +A+AR +FDD+  +DV  W  MI G A HGL  +A+ +F  M +  V+
Sbjct: 237 TALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVK 296

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E T  AVL+AC   G +  G  + S ++    +K ++Q    L+++ ++ G LK+A  
Sbjct: 297 PDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAE- 355

Query: 165 VFDRVN----DKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
             D VN    + D V+W ++I    +HG    A +L   +
Sbjct: 356 --DFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHL 393



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 5/239 (2%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G++  AR+L       +   +N ++  ++Q  L           L+    P+  T   +L
Sbjct: 43  GDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLL 102

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
             C +      G+ +H+ +        ++ +   L++MYS+ G L  AR +FDR+  +DV
Sbjct: 103 KCCSRSKLPPLGKQLHALL-TKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDV 161

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W SMI G   H    +A+ LF  M +  ++ ++ T I +L ACA +G ++ GR+    
Sbjct: 162 VSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHAN 221

Query: 235 MKDEYAIE--PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + +E+ IE   K      +V++ ++ G +  A K V D  +  D  +W  ++     HG
Sbjct: 222 L-EEWGIEIHSKSNVSTALVDMYAKGGCIASARK-VFDDVVHRDVFVWTAMISGLASHG 278


>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
 gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
          Length = 664

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/445 (44%), Positives = 283/445 (63%), Gaps = 2/445 (0%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAA 59
            VK     DL+V  +LV  Y   GDV +  ++F  +P+ R +++   +L  Y + G +  
Sbjct: 172 AVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTV 231

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD+M  +D + W+ ++ GY +      AL +FR M+ + V PN+   V  LSA  +
Sbjct: 232 AREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAAR 291

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +G LE G+++H+ ++ S  + V + VG AL++MY+KCG +  AR VFD +  +DV  WN+
Sbjct: 292 LGLLEHGKFVHNVVQRS-GMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNA 350

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A HG G+DA++LF       L P+++TF+G+L+ C+ +GLV EGRR+F  + ++Y
Sbjct: 351 MICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKY 410

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            IEP++EHYGCMV+LL RAG V EA +L+  M I PD VLWGT+L +C+ HG + LG  +
Sbjct: 411 RIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSV 470

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              LI  +  +SG YVLLS IYA    WD V  VR LM  +G  K  G S +E   KVH+
Sbjct: 471 GNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHK 530

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           FL GD  H  S +IY  L+ IN  L   GYVP    VLHDIGE++K ++++VHSE+LA+A
Sbjct: 531 FLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIA 590

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCH 444
           +G I  + G+ I+IVKNLRVC DCH
Sbjct: 591 YGFIVLEAGSPIRIVKNLRVCGDCH 615


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 180/435 (41%), Positives = 283/435 (65%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++++ YAK G +  A    D+M  KD V ++ +I G  Q+G A +AL++FR+M +  + P
Sbjct: 352 SLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAP 411

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
              T +A+L AC  + AL+ G   H Y    R    +  +  A+I+MYSKCG +  +R +
Sbjct: 412 YLETMIALLPACSHLAALQHGTCCHGYTV-VRGFTNDTSICNAIIDMYSKCGKITISREI 470

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR+ ++D++ WN+MI+GY +HG   +AL LF E+  + LKP D+T I +LSAC+H+GLV
Sbjct: 471 FDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLV 530

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG+ +F++M   + I+P++ HY CMV+LL+RAG ++EAY  +  M   P+  +WG LL 
Sbjct: 531 TEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLA 590

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR H NI +GE++++ +       +G +VL+SNIY+++G WD  A +R++ +  G +K 
Sbjct: 591 ACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKS 650

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCS +E+S  +H F+ G   HP+S  I   L+E+   +K  GY   +  VLHD+ E++K
Sbjct: 651 PGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEK 710

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSEK+A+AFG+++T P + I + KNLR+C DCH+  K I+  T R+I +RD +R
Sbjct: 711 EQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASR 770

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G C+C D+W
Sbjct: 771 FHHFKDGICNCQDFW 785



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 133/269 (49%), Gaps = 10/269 (3%)

Query: 33  FATMPQRSLVS-----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
           F+  P    VS      T +   +  + E+  AR +FD + +  VV WN+MI  YA  G 
Sbjct: 28  FSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGP 87

Query: 88  ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
             +++ L+  ML   V P   T   +L AC  + AL+ GR IH++  +   + +++ V T
Sbjct: 88  FQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTH-AHILGLSMDLYVST 146

Query: 148 ALINMYSKCGSLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
           AL++MY+KCG L  A+ +F+ ++  D+D+V WN+MI  ++ H      +    +M +  +
Sbjct: 147 ALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGV 206

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
            P+  T + +L     A  +++G+         +  +  V     ++++ ++   +  A 
Sbjct: 207 TPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTA-LLDMYAKCHLLFYAR 265

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           K+   +  + D V W  ++G   LH +I+
Sbjct: 266 KIFNTVNKKND-VCWSAMIGGYVLHDSIS 293



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 22/257 (8%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           T +L  YAK   +  AR +F+ + +K+ VCW+ MI GY  H   ++AL L+  ML    +
Sbjct: 249 TALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGL 308

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P   T   +L AC Q+  L+ G+ +H ++  S  + ++  VG +LI+MY+KCG + +A 
Sbjct: 309 NPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAV 367

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
              D +  KD V ++++I G   +G+ + AL +F +M    + P   T I LL AC+H  
Sbjct: 368 GFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLA 427

Query: 224 LVNEG---------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
            +  G         R F N      AI          +++ S+ G++  + + + D    
Sbjct: 428 ALQHGTCCHGYTVVRGFTNDTSICNAI----------IDMYSKCGKITIS-REIFDRMQN 476

Query: 275 PDSVLWGTLLGACRLHG 291
            D + W T++    +HG
Sbjct: 477 RDIISWNTMIIGYGIHG 493



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TV      D  +  +++D+Y++ G +  + ++F  M  R ++S  TM             
Sbjct: 439 TVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTM------------- 485

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                             I GY  HGL  EAL LF+ + A  ++P++VT +AVLSAC   
Sbjct: 486 ------------------IIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHS 527

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVVWNS 179
           G +  G++  S +  + NIK  +     ++++ ++ G+L +A     R+    +V +W +
Sbjct: 528 GLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGA 587

Query: 180 MIVGYAMH 187
           ++     H
Sbjct: 588 LLAACRTH 595


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/440 (44%), Positives = 286/440 (65%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +  ++L+ YAK G +  A  LFD M  KD V ++ ++ GY Q+G A+EA  +FR+M A
Sbjct: 370 LTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQA 429

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V+P+  T V+++ AC  + AL+ G+  H  +   R I     +  ALI+MY+KCG + 
Sbjct: 430 CNVQPDVATMVSLIPACSHLAALQHGKCGHGSVI-VRGIASETSICNALIDMYAKCGRID 488

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R +FD +  +D+V WN+MI GY +HG GK+A  LF +M     +P D+TFI L+SAC+
Sbjct: 489 LSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+R+F+ M  +Y I P++EHY  MV+LL+R G ++EAY+ +  M ++ D  +W
Sbjct: 549 HSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVW 608

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGACR+H NI LG++++  +       +G +VLLSNI++A G +D  A VR + KE+
Sbjct: 609 GALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQ 668

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCS IE++  +H F+ GD  H +S EIY  L+ I   +   GY   T  VL D+
Sbjct: 669 GFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDV 728

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLA+AFG+++     +I + KNLRVC DCH V K ++    R I++
Sbjct: 729 EEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIV 788

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF NG CSCGD+W
Sbjct: 789 RDANRFHHFKNGQCSCGDFW 808



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 90/385 (23%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  DL+VST+LVD+YA+      A  +F  MP R +V+                      
Sbjct: 160 LHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVA---------------------- 197

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                    WN M+ GYA HG  ++ +     ++ +   PN  T VA+L    Q GAL  
Sbjct: 198 ---------WNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQ 247

Query: 126 GRWIHSYIENSRNI---KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           GR +H+Y   + ++   K  V VGTAL++MY+KCG L  A  VF+ +  ++ V W++++ 
Sbjct: 248 GRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307

Query: 183 GYAMHGFGKDALQLFNEMCR---IRLKPSDITFI-------------------------- 213
           G+ + G   +A  LF +M       L P+ +                             
Sbjct: 308 GFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLH 367

Query: 214 -------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
                   LLS  A AGL+++    F    D+  ++  V  Y  +V+   + G+ +EA++
Sbjct: 368 TDLTAGNSLLSMYAKAGLIDQATTLF----DQMVVKDTVS-YSALVSGYVQNGKADEAFR 422

Query: 267 LVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYLISQ-NLANSGTYVLL 317
           +   M+   ++PD     +L+ AC       HG    G  I   + S+ ++ N+     L
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNA-----L 477

Query: 318 SNIYAAIGNWDGVARVRTLMKEKGV 342
            ++YA  G  D   ++  +M  + +
Sbjct: 478 IDMYAKCGRIDLSRQIFDVMPARDI 502



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 136/288 (47%), Gaps = 35/288 (12%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  A  +F+ M  ++ V W+ ++ G+   G   EA  LF+ MLA+ + 
Sbjct: 272 TALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLC 331

Query: 105 PNEVTAVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
               T+VA  L AC  +  L  G+ +H+ +  S  +  ++  G +L++MY+K G +  A 
Sbjct: 332 FLSPTSVASALRACANLSDLCLGKQLHALLAKS-GLHTDLTAGNSLLSMYAKAGLIDQAT 390

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD++  KD V +++++ GY  +G   +A ++F +M    ++P   T + L+ AC+H  
Sbjct: 391 TLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLA 450

Query: 224 LVNEGR---------------RFFNTMKDEYAIEPKVE---------------HYGCMVN 253
            +  G+                  N + D YA   +++                +  M+ 
Sbjct: 451 ALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIA 510

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEK 298
                G  +EA  L +DMK    EPD V +  L+ AC   G +  G++
Sbjct: 511 GYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKR 558



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 16/262 (6%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+++ AR LFD +    +  +N +I  Y+  G A    +          +PN  T   VL
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            AC  +  L S R +H +   +  +  ++ V TAL+++Y+KC S + A  VF R+  +DV
Sbjct: 137 KACSALLDLRSARAVHCHAARA-GLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V WN+M+ GYA+HG   D +     M +    P+  T + LL   A  G +++GR     
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLM-QDDHAPNASTLVALLPLLAQHGALSQGRAV--- 251

Query: 235 MKDEYAIEPKVEH--------YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
               Y++     H           ++++ ++ G +  A ++   M +  + V W  L+G 
Sbjct: 252 --HAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVGG 308

Query: 287 CRLHGNIALGEKIAEYLISQNL 308
             L G +     + + +++Q L
Sbjct: 309 FVLCGRMLEAFSLFKDMLAQGL 330



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 34/178 (19%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  +L+D+YA+ G +  + ++F  MP R +VS  TM+  Y                    
Sbjct: 473 ICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGI------------------ 514

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG-RWIH 130
                        HGL  EA  LF  M  +  EP++VT + ++SAC   G +  G RW H
Sbjct: 515 -------------HGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFH 561

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
             + +   I   ++    ++++ ++ G L +A      +  K DV VW +++    +H
Sbjct: 562 -MMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVH 618



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 6/172 (3%)

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L  AR +FD++    +  +N++I  Y++ G         +   R   +P++ TF  +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L AC+ A L     R  +       +   +     +V++ ++      A  +   M    
Sbjct: 136 LKACS-ALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR- 193

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQN--LANSGTYVLLSNIYAAIG 325
           D V W  +L    LHG  +  + IA  L+ Q+    N+ T V L  + A  G
Sbjct: 194 DVVAWNAMLAGYALHGKYS--DTIACLLLMQDDHAPNASTLVALLPLLAQHG 243


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 286/468 (61%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++V   A  GD+ +AE LF   P+++   L T M++ Y   G V  A   F  M  +++V
Sbjct: 139 AMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLV 198

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSY 132
            WN ++ GY ++  A +AL +F+ M+ +  V+PN  T  +VL  C  + AL  GR +H +
Sbjct: 199 SWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQW 258

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  ++ VGT+L++MY KCG L DA  +FD ++ KD+V WN+MI GYA HG G+ 
Sbjct: 259 CMK-LPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRK 317

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A++LF +M    + P  IT + +L+AC H GL + G + F TM++ Y IEP+V+HY CMV
Sbjct: 318 AIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMV 377

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +LL RAG +E A  ++  M  EP    +GTLL ACR++ N+   E  A  LI Q+  N+G
Sbjct: 378 DLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAG 437

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKE 372
            YV L+NIYA    WD V+RVR  MK+  V K PG S +E+    HEF + D  HP+   
Sbjct: 438 AYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDL 497

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I+  L+ +   +KA GY P     LHD+ E  K   L  HSEKLA+AFGLIST PG +++
Sbjct: 498 IHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLR 557

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I KNLR+C DCH   KLISK   R+I++RD  RFHHF  G CSCGDYW
Sbjct: 558 IFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 139/285 (48%), Gaps = 19/285 (6%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G +  A +LF ++P    VS  T+L+C+   G++  A  +F  M  +DV  WN M+ G +
Sbjct: 55  GRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLS 114

Query: 84  QHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           ++G   EA  +FR M A   V  N +  VA  ++ G +GA E      +   N+   K +
Sbjct: 115 KNGAIEEAEAMFRAMPARNAVSWNAM--VAARASSGDMGAAE------NLFRNAPE-KTD 165

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
             + TA+++ Y   G+++ A   F  +  +++V WN+++ GY  +    DAL++F  M  
Sbjct: 166 AILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVE 225

Query: 203 IRL-KPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
             + +P+  T   +L  C++   +  GR+     MK    +   +     ++++  + G 
Sbjct: 226 DAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMK--LPLGRSITVGTSLLSMYCKCGD 283

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAE 301
           +++A KL  +M  + D V W  ++     HG     I L EK+ +
Sbjct: 284 LDDACKLFDEMHTK-DIVAWNAMISGYAQHGGGRKAIKLFEKMKD 327



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L + + V TSL+ +Y + GD+  A KLF  M  + +V+   M++ YA+ G      
Sbjct: 260 MKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGG----- 314

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                       +A+ LF +M  E V P+ +T +AVL+AC   G
Sbjct: 315 --------------------------GRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTG 348

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             + G      ++ + NI+  V   + ++++  + G L+ A
Sbjct: 349 LCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERA 389


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/479 (41%), Positives = 286/479 (59%), Gaps = 31/479 (6%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            VK   + D +V  +L+D+YA+ G + SAE LF            T  T            
Sbjct: 558  VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFN----------KTDFT------------ 595

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                    KD V WNV+I  Y Q+G A EA+  F +M  E   PN VT V+VL A   + 
Sbjct: 596  --------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLA 647

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            A   G   H+ I     +  N  VG +LI+MY+KCG L  +  +F+ ++ KD V WN+M+
Sbjct: 648  AFREGMAFHACIIQMGFLS-NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAML 706

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             GYA+HG G  A+ LF+ M   +++   ++F+ +LSAC HAGLV EGR+ F++M D+Y I
Sbjct: 707  SGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHI 766

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            +P +EHY CMV+LL RAG  +E    +  M +EPD+ +WG LLG+CR+H N+ LGE   +
Sbjct: 767  KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 826

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +L+     N   +V+LS+IYA  G W    + R+ M + G++K PGCS +EL NKVH F 
Sbjct: 827  HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFR 886

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP+ + ++++   +   ++  GYVP    VL ++ E+ K+  L  HSE+LA+ F 
Sbjct: 887  VGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFA 946

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L++T PG++I+IVKNLRVC DCH   K ISK T R+I++RD  RFHHF +G CSC DYW
Sbjct: 947  LLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 132/248 (53%), Gaps = 2/248 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK GE   A+ LF  ++ +D+V W+ +I    Q G   EAL LF+ M  +K++
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT +++L AC  +  L+ G+ IH +   + ++  ++  GTAL++MY+KCG    A  
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALT 486

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F+R++ +D+V WNS+I GYA  G   +A+ +F ++    + P   T +G++ ACA    
Sbjct: 487 TFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLND 546

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +++G      +  +   E        ++++ ++ G +  A  L        D V W  ++
Sbjct: 547 LDQGTCIHGLIV-KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605

Query: 285 GACRLHGN 292
            A   +G+
Sbjct: 606 AAYMQNGH 613



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G+V  AR +FD M ++D V W  M+ GYA +G   E L LF +M    V  N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +V+AV+   A  +   LE G+ IH      R I  ++ V T L+ MY+KCG  + A+ +F
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQR-IDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  +D+V W+++I      G+ ++AL LF EM   ++KP+ +T + +L ACA   L+ 
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 227 EGRRF--FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            G+    F    D   ++  +     +V++ ++ G    A      M    D V W +L+
Sbjct: 448 LGKSIHCFTVKAD---MDSDLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLI 503



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 7/244 (2%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S+T ++  Y+   +   AR +FD       + WN MI  Y +    NEAL ++  M+ + 
Sbjct: 65  SITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 124

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +EP++ T   VL AC     L+ G W H  I+  R ++ +V +G  L++MYSK G LK A
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR-RGLERDVFIGAGLVDMYSKMGDLKRA 183

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R VFD++  +DVV WN+MI G +      +A+  F  M  + ++PS ++ + L       
Sbjct: 184 REVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL 243

Query: 223 GLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
             +   R       + +++          +++L S+ G V+ A + V D  ++ D V WG
Sbjct: 244 SNIELCRSIHGYVFRRDFSSAVS----NGLIDLYSKCGDVDVARR-VFDQMVDQDDVSWG 298

Query: 282 TLLG 285
           T++ 
Sbjct: 299 TMMA 302



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 37/309 (11%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y+K G++  AR +FD M ++DVV WN MI G +Q     EA+  FR M    VEP+ V+ 
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           + +     ++  +E  R IH Y+   R+    V  G  LI++YSKCG +  AR VFD++ 
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYVFR-RDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMV 290

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           D+D V W +M+ GYA +G   + L+LF++M    ++ + ++ +    A A    + +G+ 
Sbjct: 291 DQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE 350

Query: 231 FFNTM------KDEYAIEPKVEHYG------------------------CMVNLLSRAGQ 260
                       D     P +  Y                          ++  L + G 
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 261 VEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVL 316
            EEA  L  +M   K++P+ V   ++L AC     + LG+ I  + +  ++ ++  T   
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTA 470

Query: 317 LSNIYAAIG 325
           L ++YA  G
Sbjct: 471 LVSMYAKCG 479


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 284/435 (65%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G++ +A  LF+ + + + V WN +I     +G A E +  F +M    +E 
Sbjct: 177 SLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQ 236

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +E T +A+L AC  +G  +    IH  +  +      + + TAL++ Y+K G L  +  V
Sbjct: 237 DEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITIATALLDTYAKLGRLSASYGV 295

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  V   D V W +M+ GYA HG G++A++LF  M    L+P  +TF  LLSAC+H+GLV
Sbjct: 296 FTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLV 355

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEG+ +FN M + Y IEP+V+HY CMV+LL R G + +AY+++ +M +EP++ +WG LLG
Sbjct: 356 NEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLG 415

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+HGNI LG+++AE+LI+    +   Y++LSN+Y+A  +W   A+VR L+KE+G+++ 
Sbjct: 416 ACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRT 475

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG SSIE  NK H F  GD  HP++++IY  LEE+ G ++  GY  +T+ VL D+ E+ K
Sbjct: 476 PGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVK 535

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           ++ +  HSEKLA+AFGL+ ++ G ++ I KNLR+C DCH+  KLIS    R I++RD  R
Sbjct: 536 EDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKR 595

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G CSC DYW
Sbjct: 596 FHHFSDGFCSCADYW 610



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 21/287 (7%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++F ++  R       ++TCY K G    A  LFDDM  KD+V WN +I G+++    + 
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR--CLHM 121

Query: 91  ALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQV 145
           +L  F  M  E  V+PNEVT ++++SAC   GAL++G++IH +      IKV     V+V
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGF-----GIKVGGTLEVKV 174

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
             +LINMY K G L  A  +F+ + D + V WNS+I     +G  ++ +  FN+M R+ +
Sbjct: 175 ANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI 234

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           +  + T + LL AC H G+          M        K+     +++  ++ G++  +Y
Sbjct: 235 EQDEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITIATALLDTYAKLGRLSASY 293

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            +  ++    D V W  +L     HG   LG +  +    +++AN G
Sbjct: 294 GVFTEVGF-ADRVAWTAMLAGYAAHG---LGREAIKLF--ESMANKG 334



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +F T     +   T +L  YAK G ++A+  +F ++   D V W  M+ GYA HGL  EA
Sbjct: 264 MFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREA 323

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           + LF  M  + +EP+ VT   +LSAC   G +  G+   + +     I+  V   + +++
Sbjct: 324 IKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVD 383

Query: 152 MYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           +  +CG L DA  V   +  + +  VW +++    +HG
Sbjct: 384 LLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHG 421



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 109/219 (49%), Gaps = 20/219 (9%)

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           + +N  I    Q+      L+L R   L  +    E    A+L A     ++ + R IH+
Sbjct: 9   ILYNFFIQSRTQY-----PLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHA 63

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA--MHGF 189
            +  S   +    +G  L+  Y+K G  +DA  +FD +  KD+V WNS+I G++  +H  
Sbjct: 64  RVFKSLLYRDGF-IGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHM- 121

Query: 190 GKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEH 247
              +L  F  M   + +KP+++T + ++SAC  +G ++ G+      +K    +E KV +
Sbjct: 122 ---SLTAFYTMKFEMSVKPNEVTILSMISAC--SGALDAGKYIHGFGIKVGGTLEVKVAN 176

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
              ++N+  ++G +  A +L   +  +P++V W +++ A
Sbjct: 177 --SLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/436 (43%), Positives = 286/436 (65%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  Y + G +  A+++FD +E ++ V WN +I G+A+     +AL LF+ ML E   
Sbjct: 191 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFR 250

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  +  ++  AC   G LE G+W+H+Y+  S   K+    G  L++MY+K GS+ DAR 
Sbjct: 251 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE-KLVAFAGNTLLDMYAKSGSIHDARK 309

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FDR+  +DVV WNS++  YA HGFG +A+  F EM R  ++P++I+F+ +L+AC+H+GL
Sbjct: 310 IFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGL 369

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG  ++  MK +  I  +  HY  +V+LL RAG +  A + + +M IEP + +W  LL
Sbjct: 370 LDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H N  LG   AE++   +  + G +V+L NIYA+ G W+  ARVR  MKE GV+K
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N +H F+A D RHP+ +EI    EE+   +K  GYVP T  V+  + +++
Sbjct: 489 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 548

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L+ HSEK+A+AF L++T PG++I I KN+RVC DCH+  KL SK  GR+I++RD N
Sbjct: 549 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTN 608

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSC DYW
Sbjct: 609 RFHHFKDGACSCKDYW 624



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 5/261 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L  ++ +  LV   T+L  YAK G +  AR +FD M E+D V W  +I GY+QH    +A
Sbjct: 77  LIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDA 136

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           LVLF +ML     PNE T  +V+ A         G  +H +         NV VG+AL++
Sbjct: 137 LVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLD 195

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           +Y++ G + DA+LVFD +  ++ V WN++I G+A     + AL+LF  M R   +PS  +
Sbjct: 196 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFS 255

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMD 270
           +  L  AC+  G + +G+     M    + E  V   G  ++++ +++G + +A K + D
Sbjct: 256 YASLFGACSSTGFLEQGKWVHAYMIK--SGEKLVAFAGNTLLDMYAKSGSIHDARK-IFD 312

Query: 271 MKIEPDSVLWGTLLGACRLHG 291
              + D V W +LL A   HG
Sbjct: 313 RLAKRDVVSWNSLLTAYAQHG 333



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 49/255 (19%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C     L  GR +H ++  S   + ++ +   L+NMY+KCGSL++AR VFD++ ++
Sbjct: 57  LLKKCTVFKLLTQGRIVHGHLIQS-IFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA--------CAHA-- 222
           D V W ++I GY+ H    DAL LFN+M R    P++ T   ++ A        C H   
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLH 175

Query: 223 -------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
                                    GL+++ +  F+ ++    +      +  ++   +R
Sbjct: 176 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHAR 230

Query: 258 AGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANS 311
               E+A +L   M  E   P    + +L GAC   G +  G+ +  Y+I      +A +
Sbjct: 231 RCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 290

Query: 312 GTYVLLSNIYAAIGN 326
           G  +L  ++YA  G+
Sbjct: 291 GNTLL--DMYAKSGS 303



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 36/229 (15%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +   +L+D+YA+ G +  A K+F  + +R +VS  ++LT Y                   
Sbjct: 289 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY------------------- 329

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                       AQHG  NEA+  F  M    + PNE++ ++VL+AC   G L+ G W +
Sbjct: 330 ------------AQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEG-WHY 376

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     I +       ++++  + G L  A R + +   +    +W +++    MH  
Sbjct: 377 YELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH-- 434

Query: 190 GKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKD 237
               L  +       L P D    + L +  A  G  N+  R    MK+
Sbjct: 435 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKE 483


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/468 (44%), Positives = 290/468 (61%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++V  +A   D+ +AE+ F   P++   V  T M++ Y   G V  A   F+ M  +++V
Sbjct: 147 AMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 206

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
            WN ++ GY ++  A++AL LFR M+ E  V+PN  T  +VL  C  + AL  G+ IH +
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  N+ VGT+L++MY KCG L  A  +F  ++ +DVV WN+MI GYA HG GK+
Sbjct: 267 CMK-LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+ LF  M    ++P+ ITF+ +L+AC H GL + G R F  M++ Y IEP+V+HY CMV
Sbjct: 326 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +LL RAG++E A  L+  M  EP    +GTLL ACR++ N+   E  A  LI ++  ++G
Sbjct: 386 DLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAG 445

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKE 372
            YV L+NIYA    WD V+RVR  MK+  V K PG S IE+   +HEF + D  HP+   
Sbjct: 446 AYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYL 505

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I+  L ++   +KA GYVP    VLHD+ E  K   L  HSEKLA++FGLIST PG +++
Sbjct: 506 IHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLR 565

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I KNLRVC DCH   K+ISK   R+I++RD  RFHHF  G CSCGDYW
Sbjct: 566 IFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 24/298 (8%)

Query: 20  YARG-GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
           YAR  G +  A  LF  +P    VS  T+L+C+   G+   AR LF  M  +DVV WN M
Sbjct: 58  YARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTM 117

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS--ACGQ-IGALESGRWIHSYIEN 135
           + G ++ G   EA  +F   LA  V  N V+  A++S  AC + + A E   W  +  E 
Sbjct: 118 VSGLSKSGAVEEAKAVF---LAMPVR-NSVSWNAMVSGFACSRDMSAAE--EWFRNAPE- 170

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
               K +  + TA+++ Y   G++  A   F+ +  +++V WN+++ GY  +    DAL+
Sbjct: 171 ----KGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALR 226

Query: 196 LFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVN 253
           LF  M R   ++P+  T   +L  C++   +  G++     MK    +   +     +V+
Sbjct: 227 LFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMK--LPLSRNLTVGTSLVS 284

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAEYLISQN 307
           +  + G +  A KL  +M    D V W  ++     HG+    I L E++ +  +  N
Sbjct: 285 MYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPN 341



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L V TSLV +Y + GD+ SA KLF  M  R +V+   M++ YA+        
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQ-------- 319

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   EA+ LF RM  E VEPN +T VAVL+AC   G
Sbjct: 320 -----------------------HGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             + G      ++    I+  V   + ++++  + G L+ A
Sbjct: 357 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 284/435 (65%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G++ +A  LF+ + + + V WN +I     +G A E +  F +M    +E 
Sbjct: 177 SLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQ 236

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +E T +A+L AC  +G  +    IH  +  +      + + TAL++ Y+K G L  +  V
Sbjct: 237 DEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITIATALLDTYAKLGRLSASYGV 295

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  V   D V W +M+ GYA HG G++A++LF  M    L+P  +TF  LLSAC+H+GLV
Sbjct: 296 FTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLV 355

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEG+ +FN M + Y IEP+V+HY CMV+LL R G + +AY+++ +M +EP++ +WG LLG
Sbjct: 356 NEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLG 415

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+HGNI LG+++AE+LI+    +   Y++LSN+Y+A  +W   A+VR L+KE+G+++ 
Sbjct: 416 ACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRT 475

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG SSIE  NK H F  GD  HP++++IY  LEE+ G ++  GY  +T+ VL D+ E+ K
Sbjct: 476 PGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVK 535

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           ++ +  HSEKLA+AFGL+ ++ G ++ I KNLR+C DCH+  KLIS    R I++RD  R
Sbjct: 536 EDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKR 595

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G CSC DYW
Sbjct: 596 FHHFSDGFCSCADYW 610



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 21/287 (7%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++F ++  R       ++TCY K G    A  LFDDM  KD+V WN +I G+++    + 
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR--CLHM 121

Query: 91  ALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQV 145
           +L  F  M  E  V+PNEVT ++++SAC   GAL++G++IH +      IKV     V+V
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGF-----GIKVGGTLEVKV 174

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
             +LINMY K G L  A  +F+ + D + V WNS+I     +G  ++ +  FN+M R+ +
Sbjct: 175 ANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI 234

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           +  + T + LL AC H G+          M        K+     +++  ++ G++  +Y
Sbjct: 235 EQDEGTILALLQACLHLGVGKLAESIHGLMFCT-GFGAKITIATALLDTYAKLGRLSASY 293

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            +  ++    D V W  +L     HG   LG +  +    +++AN G
Sbjct: 294 GVFTEVGF-ADRVAWTAMLAGYAAHG---LGREAIKLF--ESMANKG 334



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 1/158 (0%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +F T     +   T +L  YAK G ++A+  +F ++   D V W  M+ GYA HGL  EA
Sbjct: 264 MFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREA 323

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           + LF  M  + +EP+ VT   +LSAC   G +  G+   + +     I+  V   + +++
Sbjct: 324 IKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVD 383

Query: 152 MYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
           +  +CG L DA  V   +  + +  VW +++    +HG
Sbjct: 384 LLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHG 421



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 20/219 (9%)

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           + +N  I    Q+      L+L R   L  +    E    A+L A     ++ + R IH+
Sbjct: 9   ILYNFFIQSRTQY-----PLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHA 63

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA--MHGF 189
            +  S   +    +G  L+  Y+K G  +DA  +FD +  KD+V WNS+I G++  +H  
Sbjct: 64  RVFKSLLYRDGF-IGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHM- 121

Query: 190 GKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEH 247
              +L  F  M   + +KP+++T + ++SAC   G ++ G+      +K    +E KV +
Sbjct: 122 ---SLTAFYTMKFEMSVKPNEVTILSMISAC--NGALDAGKYIHGFGIKVGGTLEVKVAN 176

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
              ++N+  ++G +  A +L   +  +P++V W +++ A
Sbjct: 177 --SLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAA 212


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/490 (42%), Positives = 304/490 (62%), Gaps = 11/490 (2%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VKF   K   V  +L+++Y + G V  A K+F  +  RS+VS +  L    K   V + 
Sbjct: 149 VVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESG 208

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQ 119
           RVLFD+M E++ V W VMI GY  +G   EA +L + M        + VT  +VLSAC Q
Sbjct: 209 RVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQ 268

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
            G +  GRW+H Y      +   V VGT+L++MY+KCG +  A  VF  +  ++VV WN+
Sbjct: 269 SGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNA 328

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           M+ G AMHG GK A+ +F  M    +KP  +TF+ LLSAC+H+GLV +G  +F+ ++  Y
Sbjct: 329 MLGGLAMHGMGKIAVDMFPSMVE-EVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVY 387

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P++EHY CMV LL RAG++EEA  +V +M+I P+ V+ G+L+G+C  HG + LGEKI
Sbjct: 388 RIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKI 447

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
              L+  +  N+  +++LSN+YA  G  +    +R ++K++G++K PG SSI +  K+H+
Sbjct: 448 MRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQ 507

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT--QIVLHDIGEKQKQNSLE------- 410
           F+AGD  H ++ EIYM L+E+   L++ GYVP T  Q++           SLE       
Sbjct: 508 FIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLF 567

Query: 411 VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470
            HSEKLA+ FGL+ST  G+ + I KNLR+C DCH+  K+ SK   R+I++RDR RFH F 
Sbjct: 568 THSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFK 627

Query: 471 NGTCSCGDYW 480
           +G+CSC DYW
Sbjct: 628 HGSCSCSDYW 637



 Score = 38.9 bits (89), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 112 AVLSACGQIGALESGRWIH-SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV- 169
           ++L  C +  AL  G+ +H + I        N  +  AL+++Y  C     AR +FD + 
Sbjct: 25  SLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDEIP 84

Query: 170 -NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            + KD V + ++I     H    ++L+LF +M +  L    +  +  L+ACA  G
Sbjct: 85  QSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLG 135


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/484 (42%), Positives = 296/484 (61%), Gaps = 7/484 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  +  +L+V ++LV LYA+   V  A  +F  MP R +VS   +LT Y K  E     
Sbjct: 206 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 265

Query: 62  VLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            LF  M       D   WN +I G  ++G + EA+ +FR+M     +PNE+T  ++L AC
Sbjct: 266 SLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPAC 325

Query: 118 GQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
                L  G+ IH Y+   R+ KV ++   TAL+ MY+KCG L  +R VFD +  KDVV 
Sbjct: 326 SFSENLRMGKEIHCYV--FRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVA 383

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WN+MI+  AMHG GK+AL LF++M   R++P+ +TF G+LS C+H+ LV EG + FN+M 
Sbjct: 384 WNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMG 443

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
            ++ +EP   HY C+V++ SRAG++ EAYK +  M +EP +  WG LL ACR++ N+ L 
Sbjct: 444 RDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELA 503

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           +  A+ L      N G YV L NI      W   ++VR LMKE+G+ K PGCS +++ NK
Sbjct: 504 KISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNK 563

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VH F+ GD  + +S +IY  L+E+   +K  GY P T  VL DI +++K  SL  HSEKL
Sbjct: 564 VHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKL 623

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           AVAFG+++    ++I++ KNLR+C DCH   K +SK  G  I++RD  RFHHF NG CSC
Sbjct: 624 AVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSC 683

Query: 477 GDYW 480
            D W
Sbjct: 684 KDLW 687



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 35/299 (11%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y K   V  AR +FDD+  +DVV W  +   Y + G   + + +FR M    V+
Sbjct: 117 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 176

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN +T  ++L AC ++  L+SG+ IH +      + VN+ V +AL+++Y+KC S+++AR+
Sbjct: 177 PNPMTVSSILPACAELKDLKSGKEIHGFAVR-HGMVVNLFVCSALVSLYAKCLSVREARM 235

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +DVV WN ++  Y  +   +    LF +M R  ++  + T+  ++  C   G 
Sbjct: 236 VFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENG- 294

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                                           R+ +  E ++ +  M  +P+ +   ++L
Sbjct: 295 --------------------------------RSEEAVEMFRKMQKMGFKPNEITISSIL 322

Query: 285 GACRLHGNIALGEKIAEYLISQ-NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC    N+ +G++I  Y+     + +  +   L  +YA  G+ +    V  +M+ K V
Sbjct: 323 PACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV 381



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+   AR LFD++ + D    + +I     HGL+NEA+ ++  +    ++P+    +A  
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 115 SACGQIGALESGRWIHSYIENSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
            AC   G     + +H   + +R  +  +V VG ALI+ Y KC  ++ AR VFD +  +D
Sbjct: 86  KACAVSGDALRVKEVHD--DATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 143

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           VV W S+   Y   GF +  + +F EM    +KP+ +T   +L ACA    +  G+    
Sbjct: 144 VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHG 203

Query: 234 TMKDEYAIEPKVEHYGC--MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                  +   V  + C  +V+L ++   V EA ++V D+    D V W  +L A
Sbjct: 204 FAVRHGMV---VNLFVCSALVSLYAKCLSVREA-RMVFDLMPHRDVVSWNGVLTA 254



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 15/150 (10%)

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            +G  LI +    G    AR +FD +   D    +++I     HG   +A+++++ +   
Sbjct: 13  HLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQER 72

Query: 204 RLKPSDITFIGLLSACAHAG------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
            +KP    F+    ACA +G       V++       M D +     +  YG       +
Sbjct: 73  GIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYG-------K 125

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
              VE A ++  D+ +  D V W T L +C
Sbjct: 126 CKCVEGARRVFDDLVVR-DVVSW-TSLSSC 153


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 293/481 (60%), Gaps = 16/481 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  +  + +V  +L+DLYAR GD+ +A  +FA +  R +VS  T++T    QG +  A 
Sbjct: 403 LKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAF 462

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            L  +M+++         D   + G+A            E V PN VT + +L  C  + 
Sbjct: 463 QLVREMQQQ-----GRFTDATTEDGIAGTD--------EEPVVPNNVTLMTLLPGCAMLA 509

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A   G+ IH Y      +  ++ VG+AL++MY+KCG L  +R VFDR+  ++V+ WN +I
Sbjct: 510 APAKGKEIHGYAMR-HALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLI 568

Query: 182 VGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + Y MHG G +A+ LF+ M      KP+++TFI  L+AC+H+G+V+ G   F++MK  + 
Sbjct: 569 MAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHG 628

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHGNIALGEKI 299
           ++P  + + C V++L RAG+++EAY ++  M+     V  W + LGACRLH N+ LGE  
Sbjct: 629 VQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIA 688

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           AE L       +  YVLL NIY+A G W+  + VR  M+++GV KEPGCS IEL   +H 
Sbjct: 689 AERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHR 748

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AG+  HP+S  ++  ++ +   ++ +GY P T  VLHDI E +K   L  HSEKLA+A
Sbjct: 749 FMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIA 808

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FGL+ T PG +I++ KNLRVC DCH   K IS+  GR+I++RD  RFHHFV+G CSCGDY
Sbjct: 809 FGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDY 868

Query: 480 W 480
           W
Sbjct: 869 W 869



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 137/262 (52%), Gaps = 16/262 (6%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKD-----VVCWNVMIDGYAQHGLANEALVLFRR 97
           +   +L+ YA+ G V  A++LF  ++  D     VV WN M+    Q G   EA+ +   
Sbjct: 202 AFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYD 261

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+A  V P+ +T  + L AC Q+  L  GR +H+Y+    ++  N  V +AL++MY+   
Sbjct: 262 MVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHE 321

Query: 158 SLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIG 214
            +  AR VFD V    + + +WN+M+ GYA  G  ++AL+LF  M     + PS+ T  G
Sbjct: 322 RVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAG 381

Query: 215 LLSACAHAGLVNEGRRFFN--TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           +L ACA +     G+   +   +K   A  P V++   +++L +R G +E A  +     
Sbjct: 382 VLPACARSETF-AGKEAVHGYVLKRGMADNPFVQN--ALMDLYARLGDMEAARWIF--AA 436

Query: 273 IEP-DSVLWGTLLGACRLHGNI 293
           IEP D V W TL+  C + G+I
Sbjct: 437 IEPRDVVSWNTLITGCVVQGHI 458



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 152/328 (46%), Gaps = 31/328 (9%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           + ++  YA    V  AR +FD +    + +  WN M+ GYAQ G+  EAL LF RM AE 
Sbjct: 311 SALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEA 370

Query: 103 -VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V P+E T   VL AC +         +H Y+   R +  N  V  AL+++Y++ G ++ 
Sbjct: 371 GVVPSETTIAGVLPACARSETFAGKEAVHGYVLK-RGMADNPFVQNALMDLYARLGDMEA 429

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI------------------ 203
           AR +F  +  +DVV WN++I G  + G   DA QL  EM +                   
Sbjct: 430 ARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEE 489

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            + P+++T + LL  CA      +G+         +A++  +     +V++ ++ G +  
Sbjct: 490 PVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAM-RHALDSDIAVGSALVDMYAKCGCLAL 548

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHG----NIALGEKIAEYLISQNLANSGTYVLLSN 319
           + + V D   + + + W  L+ A  +HG     IAL +++   + ++   N  T++    
Sbjct: 549 S-RAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMV--MSNEAKPNEVTFIAALA 605

Query: 320 IYAAIGNWD-GVARVRTLMKEKGVQKEP 346
             +  G  D G+    ++ +  GVQ  P
Sbjct: 606 ACSHSGMVDRGMELFHSMKRNHGVQPTP 633



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 148/342 (43%), Gaps = 45/342 (13%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +LT YA+ G++ AA  LF+ M  +D V +N +I           AL   R ML E    
Sbjct: 101 ALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL 160

Query: 106 NEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDAR 163
           +  T V+VL AC  +   L  GR  H++   +  +  + +    AL++MY++ G + DA+
Sbjct: 161 SSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQ 220

Query: 164 LVFDRVNDKD-----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++F  V+  D     VV WN+M+      G   +A+++  +M    ++P  ITF   L A
Sbjct: 221 MLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPA 280

Query: 219 CAHAGLVNEGRRFF----------------NTMKDEYAIEPKV------------EH--- 247
           C+   +++ GR                   + + D YA   +V             H   
Sbjct: 281 CSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQL 340

Query: 248 --YGCMVNLLSRAGQVEEAYKLVMDMKIE----PDSVLWGTLLGACRLHGNIALGEKIAE 301
             +  MV   ++AG  EEA +L   M+ E    P       +L AC      A  E +  
Sbjct: 341 GLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHG 400

Query: 302 YLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           Y++ + +A N      L ++YA +G+ +    +   ++ + V
Sbjct: 401 YVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDV 442



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 43/222 (19%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V  AL+  Y++CG L  A  +F+ +  +D V +NS+I    +      AL    +M    
Sbjct: 98  VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG 157

Query: 205 LKPSDITFIGLLSACAH--------------------------------------AGLVN 226
              S  T + +L AC+H                                       GLV+
Sbjct: 158 HPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVD 217

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTL 283
           + +  F ++    +    V  +  MV+LL ++G+  EA +++ DM    + PD + + + 
Sbjct: 218 DAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASA 277

Query: 284 LGACRLHGNIALGEKIAEYLI--SQNLANSGTYVLLSNIYAA 323
           L AC     ++LG ++  Y++  S   ANS     L ++YA+
Sbjct: 278 LPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYAS 319


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 277/437 (63%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y K G V  +  +F  +  KD+V W+ M+ G AQ   + +A+ +F +++ E V+
Sbjct: 443 TALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVK 502

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  +V++AC    A +E G+ IH+    S      + V +AL+ MYSK G+++ A 
Sbjct: 503 PNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNA-LCVSSALLTMYSKKGNIESAE 561

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF R  ++D+V WNSMI GY  HG  K AL++F  M    L   D+TFIG+L+AC HAG
Sbjct: 562 KVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAG 621

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG ++FN M  +Y I+ K+EHY CMV+L SRAG  ++A  ++  M       +W TL
Sbjct: 622 LVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTL 681

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACR+H N+ LG+  AE L+S    ++  YVLLSNI+A  GNW+  A VR LM E+ V+
Sbjct: 682 LAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVK 741

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS IE+ N++  FLAGD+ HP S  +Y  LEE++  LK  GY P T  V HD+ E+
Sbjct: 742 KEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEE 801

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  L  HSE+LA+A+GLI+  PG  I+I KNLR+C DCH V +LIS    R +++RD 
Sbjct: 802 HKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDS 861

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G CSCG YW
Sbjct: 862 NRFHHFKGGVCSCGGYW 878



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 24/253 (9%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K  +    R +FD+M  K+VV W  ++ GYA++GL +E + L  +M  E V 
Sbjct: 143 TSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVN 202

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T   VL A      +E G  +H+ I  +   +    V  ALI MY K   + DA  
Sbjct: 203 PNGFTFATVLGALADESIIEGGVQVHAMIVKN-GFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA---- 220
           VFD +  +D V WN MI GYA  GF  +  Q+F+ M    +K S   F   L  C+    
Sbjct: 262 VFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRE 321

Query: 221 -------HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
                  H G+V  G  F   ++    +              S+   V+EA+KL      
Sbjct: 322 LNFTKQLHCGVVKNGYEFAQDIRTALMVT------------YSKCSSVDEAFKLFSMADA 369

Query: 274 EPDSVLWGTLLGA 286
             + V W  ++G 
Sbjct: 370 AHNVVTWTAMIGG 382



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 137/270 (50%), Gaps = 17/270 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T ++  Y+K   V  A  LF   +   +VV W  MI G+ Q+    +A+ LF +M  E V
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGV 404

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T   VL+  G+  +L S   +H+ I  +   KV   V TAL++ Y K G++ ++ 
Sbjct: 405 RPNHFTYSTVLA--GKPSSLLS--QLHAQIIKAYYEKVP-SVATALLDAYVKTGNVVESA 459

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHA 222
            VF  +  KD+V W++M+ G A     + A+++F ++ +  +KP++ TF  +++AC + A
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
             V  G++   T     A++    +  C    ++ + S+ G +E A K V   + E D V
Sbjct: 520 ATVEHGKQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESAEK-VFTRQEERDIV 573

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            W +++     HG+     ++ + + +Q L
Sbjct: 574 SWNSMITGYGQHGDAKKALEVFQIMQNQGL 603



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 3/227 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  LFD+   KD+  +N ++  ++++    EAL LF+ + +  +  + +T    L  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +     GR +H     S  ++ +V VGT+L++MY K    +D R +FD +  K+VV W S
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           ++ GYA +G   + + L N+M    + P+  TF  +L A A   ++ EG    + M  + 
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESII-EGGVQVHAMIVKN 234

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             E        ++ +  ++  V +A + V D  +  DSV W  ++G 
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDA-EAVFDSMVVRDSVTWNIMIGG 280



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 40/220 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK      L VS++L+ +Y++ G++ SAEK+F    +R +VS  +M+T Y          
Sbjct: 533 VKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY---------- 582

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                 QHG A +AL +F+ M  + +  ++VT + VL+AC   G
Sbjct: 583 ---------------------GQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAG 621

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +E G    + +    +I   ++  + ++++YS+ G    A  + + +       +W ++
Sbjct: 622 LVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTL 681

Query: 181 IVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +H     GK A +       + L+P+D     LLS
Sbjct: 682 LAACRVHRNLELGKLAAEKL-----VSLQPNDAVGYVLLS 716


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/461 (45%), Positives = 295/461 (63%), Gaps = 3/461 (0%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           RG DV  A ++F  M  R+  S   ML  Y K GE+ +A+ +F +M  +D V W+ MI G
Sbjct: 176 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 235

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
            A +G  NE+ + FR +    + PNEV+   VLSAC Q G+ E G+ +H ++E +    +
Sbjct: 236 IAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI 295

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV-WNSMIVGYAMHGFGKDALQLFNEM 200
            V V  ALI+MYS+CG++  ARLVF+ + +K  +V W SMI G AMHG G++A++LFNEM
Sbjct: 296 -VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 354

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
               + P  I+FI LL AC+HAGL+ EG  +F+ MK  Y IEP++EHYGCMV+L  R+G+
Sbjct: 355 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 414

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           +++AY  +  M I P +++W TLLGAC  HGNI L E++ + L   +  NSG  VLLSN 
Sbjct: 415 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNA 474

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           YA  G W  VA +R  M  + ++K    S +E+   +++F AG+ +     E +  L+EI
Sbjct: 475 YATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEI 534

Query: 381 NGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
              LK E GY P+    L+D+ E++K++ +  HSEKLA+AF L     G +I+IVKNLR+
Sbjct: 535 ILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRI 594

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCHAV KL SK  G +I++RDRNRFH F +G+CSC DYW
Sbjct: 595 CRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/479 (41%), Positives = 295/479 (61%), Gaps = 34/479 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ D++V ++L+D+Y++  D+ +A  +F  MP R                      
Sbjct: 179 IKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTR---------------------- 216

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                    D+V WN +I G+AQ+   NEAL LF+RM       ++ T  +VL AC  + 
Sbjct: 217 ---------DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLA 267

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            LE GR +H ++        ++ +  ALI+MY KCGSL+DA   F R+ +KDV+ W++M+
Sbjct: 268 LLELGRQVHVHV---LKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMV 324

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A +G+ + AL+LF  M     +P+ IT +G+L AC+HAGLV +G  +F +MK  + +
Sbjct: 325 AGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGV 384

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P  EHYGC+++LL RAG+++EA KL+ +M+ EPDSV W TLLGACR+H N+ L    A+
Sbjct: 385 DPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAK 444

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +I     ++GTY+LLSNIYA    W+ VA VR  M  +G++K PGCS IE+  ++H F+
Sbjct: 445 KIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFI 504

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HPK +EI   L ++   +   GYVP T  VL D+  +QK++SL  HSEKLA+ FG
Sbjct: 505 LGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFG 564

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++     +++I KNLR+C DCH   K++S+   R I++RD  R+HHF +G CSCGDYW
Sbjct: 565 LMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 30  EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN 89
           E +F    +  +  + T+L  Y K   +  A  LFD+M E++VV W  MI  Y+   L +
Sbjct: 79  EHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNK-LND 137

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           +AL     M  E V PN  T  +VL AC  +  L   R +H  I  +  ++ +V V +AL
Sbjct: 138 KALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKT-GLESDVFVRSAL 193

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           I++YSK   L +A  VFD +  +D+VVWNS+I G+A +  G +AL LF  M R       
Sbjct: 194 IDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQ 253

Query: 210 ITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            T   +L AC    L+  GR+   + +K     +  +     ++++  + G +E+A    
Sbjct: 254 ATLTSVLRACTGLALLELGRQVHVHVLK----FDQDLILNNALIDMYCKCGSLEDANSAF 309

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
             M +E D + W T++     +G
Sbjct: 310 SRM-VEKDVISWSTMVAGLAQNG 331



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 9/195 (4%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V  + +T   ++  C   GA++ G+ +H +I   +  +  + V   L+NMY K   L++A
Sbjct: 51  VFADAITYSELIKCCSARGAVQEGKRVHEHI-FCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +FD + +++VV W +MI  Y+ +     AL+    M R  ++P+  T+  +L AC   
Sbjct: 110 EDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRAC--D 166

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GL N  +     +K    +E  V     ++++ S+   ++ A  +  +M    D V+W +
Sbjct: 167 GLPNLRQLHCGIIKT--GLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTR-DLVVWNS 223

Query: 283 LLG--ACRLHGNIAL 295
           ++G  A    GN AL
Sbjct: 224 IIGGFAQNSDGNEAL 238


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/438 (44%), Positives = 289/438 (65%), Gaps = 7/438 (1%)

Query: 48  LTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VE 104
           L  YAK G +A AR +F+ +    +D + WN M+  Y  HGL  EA  LF+ M AEK V+
Sbjct: 366 LNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVK 425

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN+VT VAVL A     ++  GR IH+ +  S   + +  +  AL+NMY+KCGSL DA+ 
Sbjct: 426 PNKVTFVAVLDASTSRTSIAQGREIHARVV-SNGFESDTVIQNALLNMYAKCGSLDDAQA 484

Query: 165 VFDRV--NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           +FD+   N +DV+ W S++ GYA +G  + AL+LF  M +  ++P+ ITFI  L+AC H 
Sbjct: 485 IFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHG 544

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G + +G    + M  ++ I P  +H+ C+V+LL R G+++EA KL ++   + D + W  
Sbjct: 545 GKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKL-LERTSQADVITWMA 603

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC+    +  GE+ AE ++  +   + +Y++L+++YAA G W+  A +R  M +KG+
Sbjct: 604 LLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGI 663

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           + +PGCS++E++ ++H F AGD  HPKS+EIY+ LE ++  +KA GYV  T +VLHD+ +
Sbjct: 664 RADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQ 723

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+  L  HSEKLA+AFGL+ST  G+ ++++KNLRVC DCH   KLISK TGR I+MRD
Sbjct: 724 EHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRD 783

Query: 463 RNRFHHFVNGTCSCGDYW 480
            +R+HHF +GTCSCGDYW
Sbjct: 784 SSRYHHFTSGTCSCGDYW 801



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 9/255 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT+LT YA+  +++ AR  FD ++  DVV WN M   Y QH    EALVLF RML E V 
Sbjct: 259 TTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVR 318

Query: 105 PNEVTAVAVLSACGQI---GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           P+  T +  L+AC       A   G+ I S +E +  ++ +  V  A +NMY+KCGSL D
Sbjct: 319 PSVATFITALTACAAYPPQTASAIGKRIQSLLEEA-GLEGDTAVANATLNMYAKCGSLAD 377

Query: 162 ARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSA 218
           AR VF+R++   +D + WNSM+  Y  HG GK+A +LF  M   +L KP+ +TF+ +L A
Sbjct: 378 ARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDA 437

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV-MDMKIEPDS 277
                 + +GR     +      E        ++N+ ++ G +++A  +       + D 
Sbjct: 438 STSRTSIAQGREIHARVVSN-GFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 496

Query: 278 VLWGTLLGACRLHGN 292
           + W +L+     +G 
Sbjct: 497 IAWTSLVAGYAQYGQ 511



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 112/198 (56%), Gaps = 9/198 (4%)

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +V PN    +A+++AC  +G L +GR IHS I + R+ + N  +G ALI+MYSKCGSL D
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISD-RDFEENSVLGNALISMYSKCGSLID 60

Query: 162 ARLVFDRV---NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLS 217
           A+  FDR+   + +DVV WN+MI  +  +G  ++ALQLF +M      P + +TF+ +L 
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLD 120

Query: 218 ACAHAGLVN-EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +C  AGL++ E  R  +       IE +      +V+   + G +++A+++ +    E  
Sbjct: 121 SCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP 180

Query: 277 S---VLWGTLLGACRLHG 291
           S   V    ++ AC  +G
Sbjct: 181 STSLVTCSAMISACWQNG 198



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 158/329 (48%), Gaps = 30/329 (9%)

Query: 47  MLTCYAKQGEVAAARVLFDDM---EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +++ Y+K G +  A+  FD +    ++DVV WN MI  + ++G A EAL LFR M  +  
Sbjct: 48  LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGA 107

Query: 104 -EPNEVTAVAVLSACGQIG--ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             PN VT V+VL +C + G  +LE  R IH  I  +  I+    V TAL++ Y K GSL 
Sbjct: 108 PPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA-GIEREAFVRTALVDSYGKLGSLD 166

Query: 161 DARLVFDRVNDKD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           DA  VF R +D++    +V  ++MI     +G+ +++L+LF  M     KPS +T + +L
Sbjct: 167 DAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVL 226

Query: 217 SAC-------AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
           +AC       A A ++ +     +  +D       +  Y    N LSRA       +   
Sbjct: 227 NACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYA-RSNDLSRA-------RATF 278

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS-GTYVLLSNIYAAIGNWD 328
           D    PD V W  +  A   H        + E ++ + +  S  T++      AA     
Sbjct: 279 DAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQT 338

Query: 329 GVA---RVRTLMKEKGVQKEPGCSSIELS 354
             A   R+++L++E G++ +   ++  L+
Sbjct: 339 ASAIGKRIQSLLEEAGLEGDTAVANATLN 367



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 46/297 (15%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATM----PQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++++ +V T+LVD Y + G +  A ++F       P  SLV+ + M++            
Sbjct: 145 IEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMIS------------ 192

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                       CW        Q+G   E+L LF  M  E  +P+ VT V+VL+AC  + 
Sbjct: 193 -----------ACW--------QNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLP 233

Query: 122 ALESGRWI-HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
              +  ++    +E     + NV +GT L+  Y++   L  AR  FD +   DVV WN+M
Sbjct: 234 VGSATAFVLEQAMEVVSATRDNV-LGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAM 292

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE---GRRFFNTMKD 237
              Y  H   ++AL LF  M    ++PS  TFI  L+ACA          G+R   ++ +
Sbjct: 293 AAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKR-IQSLLE 351

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP---DSVLWGTLLGACRLHG 291
           E  +E         +N+ ++ G + +A  +    +I P   D + W ++L A   HG
Sbjct: 352 EAGLEGDTAVANATLNMYAKCGSLADARAVF--ERISPTRRDCITWNSMLAAYGHHG 406


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 302/480 (62%), Gaps = 6/480 (1%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
           ++K++    S++  Y + G   +  KLF  M    L    V+++ +L+ Y + G +  A 
Sbjct: 217 VNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEAC 276

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             F +++EKD VCW  M+ G AQ+G   +AL+LFR ML E V P+  T  +V+S+C ++ 
Sbjct: 277 KTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLA 336

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +L  G+ +H        +  ++ V +AL++MYSKCG   DA +VF R+  ++V+ WNSMI
Sbjct: 337 SLCQGQAVHGKAV-IFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMI 395

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           +GYA +G   +AL L+ EM    LKP +ITF+G+LSAC HAGLV  G+ +F ++   + +
Sbjct: 396 LGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGM 455

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P  +HY CM+NLL RAG +++A  L+  M  EP+ ++W TLL  CR++ ++  GE  A 
Sbjct: 456 NPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAAR 515

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           +L   +  N+G Y++LSNIYAA G W  VA VR+LMK   ++K    S IE+ N+VH+F+
Sbjct: 516 HLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFV 575

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           A D  H ++++IY  L  +   L+  G+ P T +VLHD+ E++K +S+  HSEKLA+AF 
Sbjct: 576 AEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFW 635

Query: 422 LISTQPG-TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LI    G T I+I+KN+RVC DCH   K +SK   R I++RD NRFHHF+ G CSC D W
Sbjct: 636 LIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 160/294 (54%), Gaps = 9/294 (3%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++   L+ LYA+ G++  A  LF  M +R + S   ML+ Y+K G V   R +FD M 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
             D V +N +I G++ +G +++AL  F RM  E  E  + T V+VL AC Q+  ++ G+ 
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQ 176

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  I  + ++  +V V  AL NMY+KCG+L  AR +FDR+ +K+VV WNSMI GY  +G
Sbjct: 177 IHGRIV-ATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNG 235

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +   +LF EM    L P  +T   +LSA    G ++E  + F  +K++  +       
Sbjct: 236 QPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMV 295

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKI 299
           GC  N     G+ E+A  L  +M +E   PD+    +++ +C    ++  G+ +
Sbjct: 296 GCAQN-----GKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAV 344



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 32/181 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V F +D DL VS++LVD+Y++ G+   A  +F  M  R+++S  +M+  YA+ G      
Sbjct: 349 VIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNG------ 402

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                   KD+                 EAL L+  ML E ++P+ +T V VLSAC   G
Sbjct: 403 --------KDL-----------------EALALYEEMLHENLKPDNITFVGVLSACMHAG 437

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            +E G+     I     +       + +IN+  + G +  A  L+     + + ++W+++
Sbjct: 438 LVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTL 497

Query: 181 I 181
           +
Sbjct: 498 L 498


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/531 (39%), Positives = 316/531 (59%), Gaps = 53/531 (9%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K S ++ +  S +L+D+Y++ GD+  A ++F  M +R++VS T+M+  Y + G    A
Sbjct: 139 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 198

Query: 61  RVLFDDMEE--------------------------KDV--------------VCWNVMID 80
            +L   ME+                          KDV              VC N ++D
Sbjct: 199 IILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC-NALMD 257

Query: 81  GYAQHGLANEALVLFRRMLAEKV----------EPNEVTAVAVLSACGQIGALESGRWIH 130
            YA+ G    A  +F  M+ + +          +P+  T   +L AC  + ALE G+ IH
Sbjct: 258 MYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIH 317

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            YI  +     +  V  AL+++Y KCG L  ARL+FD +  KD+V W  MI GY MHG+G
Sbjct: 318 GYILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYG 376

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A+  FNEM    ++P +++FI +L AC+H+GL+ +G RFF  MK+++ IEPK+EHY C
Sbjct: 377 NEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYAC 436

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           MV+LLSR G + +AYK +  + I PD+ +WG LL  CR++ +I L EK+AE +      N
Sbjct: 437 MVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPEN 496

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLRHPK 369
           +G YVLL+NIYA    W+ V R+R  + +KG++K PGCS IE+  +V+ F++G +  HP 
Sbjct: 497 TGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPH 556

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
           SK+I  +L+++   +K EGY P+T+  L +  E QK+ +L  HSEKLA+AFGL++  P  
Sbjct: 557 SKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRK 616

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++ KNLRVC DCH + K +SK T R+I++RD NRFHHF +G CSC  +W
Sbjct: 617 TIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 150/291 (51%), Gaps = 25/291 (8%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA----------------- 58
           LV  YA  GD+    ++F TM ++++     M++ YAK G+                   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 59  ---AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
              +A  LFD + ++DV+ WN MI GY  +GL    L ++++M+   ++ +  T ++VL 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 116 ACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            C + G L  G+ +HS  I++S   ++N      L++MYSKCG L  A  VF+++ +++V
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFS--NTLLDMYSKCGDLDGALRVFEKMGERNV 179

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W SMI GY   G+   A+ L  +M +  +K   +    +L ACA +G ++ G+   + 
Sbjct: 180 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 239

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +K    +   +     ++++ ++ G +E A  +   M ++ D + W T++G
Sbjct: 240 IKAN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMVG 288



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 125/287 (43%), Gaps = 64/287 (22%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD--------- 161
           V+  + CG    L+ GR +   +E     K NV +   +++ Y+K G  K+         
Sbjct: 3   VSFYATCGD---LKEGRRVFDTME-----KKNVYLWNFMVSEYAKIGDFKESICLFKIMV 54

Query: 162 -----------ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
                      A  +FD++ D+DV+ WNSMI GY  +G  +  L ++ +M  + +     
Sbjct: 55  EKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLA 114

Query: 211 TFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYAI-------------- 241
           T I +L  CA +G ++ G+                F NT+ D Y+               
Sbjct: 115 TIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 174

Query: 242 -EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGE 297
            E  V  +  M+   +R G  + A  L+  M+   ++ D V   ++L AC   G++  G+
Sbjct: 175 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 234

Query: 298 KIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            + +Y+ + N+A S  +V   L ++YA  G+ +G   V + M  K +
Sbjct: 235 DVHDYIKANNMA-SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDI 280


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/438 (44%), Positives = 289/438 (65%), Gaps = 7/438 (1%)

Query: 48  LTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VE 104
           L  YAK G +A AR +F+ +    +D + WN M+  Y  HGL  EA  LF+ M AEK V+
Sbjct: 500 LNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVK 559

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN+VT VAVL A     ++  GR IH+ +  S   + +  +  AL+NMY+KCGSL DA+ 
Sbjct: 560 PNKVTFVAVLDASTSRTSIAQGREIHARVV-SNGFESDTVIQNALLNMYAKCGSLDDAQA 618

Query: 165 VFDRV--NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           +FD+   N +DV+ W S+I GYA +G  + AL+LF  M +  ++P+ +TFI  L+AC H 
Sbjct: 619 IFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHG 678

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G + +G    + M  ++ I P  +H+ C+V+LL R G+++EA KL ++   + D + W  
Sbjct: 679 GKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKL-LERTSQADVITWMA 737

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC+    +  GE+ AE ++  +   + +Y++L+++YAA G W+  A +R  M +KG+
Sbjct: 738 LLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGI 797

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           + +PGCS++E++ ++H F AGD  HPKS+EIY+ LE ++  +KA GYV  T +VLHD+ +
Sbjct: 798 RADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQ 857

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           + K+  L  HSEKLA+AFGL+ST  G+ ++++KNLRVC DCH   KLISK TGR I+MRD
Sbjct: 858 EHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRD 917

Query: 463 RNRFHHFVNGTCSCGDYW 480
            +R+HHF +GTCSCGDYW
Sbjct: 918 SSRYHHFTSGTCSCGDYW 935



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 9/255 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           TT+LT YA+  ++  AR  FD ++  DVV WN M   Y QH  + EALVLF RML E V 
Sbjct: 393 TTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVR 452

Query: 105 PNEVTAVAVLSACGQI---GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           P+  T +  L+AC       A   G+ I S +E +  ++ +  V  A +NMY+KCGSL D
Sbjct: 453 PSVATFITALTACAAYPPQTASAIGKRIQSLLEEA-GLEGDTAVANATLNMYAKCGSLAD 511

Query: 162 ARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSA 218
           AR VF+R++   +D + WNSM+  Y  HG GK+A +LF  M   +L KP+ +TF+ +L A
Sbjct: 512 ARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDA 571

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV-MDMKIEPDS 277
                 + +GR     +      E        ++N+ ++ G +++A  +       + D 
Sbjct: 572 STSRTSIAQGREIHARVVSN-GFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDV 630

Query: 278 VLWGTLLGACRLHGN 292
           + W +L+     +G 
Sbjct: 631 IAWTSLIAGYAQYGQ 645



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 14/255 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  +AK G +A A  L D      V     MI  + +HG  ++A+ LF RM   +V 
Sbjct: 84  SDLIVMHAKCGNLAEAEALADRF--ASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVR 138

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN    +A+++AC  +G L +GR IHS I + R+ + N  +G ALI+MYSKCGSL DA+ 
Sbjct: 139 PNCHALIALVNACSCLGNLAAGRRIHSQISD-RDFEENSVLGNALISMYSKCGSLIDAKQ 197

Query: 165 VFDRV---NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACA 220
            FDR+   + +DVV WN+MI  +  +G  ++ALQLF +M R    P + +TF+ +L +C 
Sbjct: 198 AFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCV 257

Query: 221 HAGLVN-EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS-- 277
            AGL++ E  R  +       IE +      +V+   + G +++A+++ +    E  S  
Sbjct: 258 EAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTS 317

Query: 278 -VLWGTLLGACRLHG 291
            V    ++ AC  +G
Sbjct: 318 LVTCSAMISACWQNG 332



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 137/302 (45%), Gaps = 48/302 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM----PQRSLVSLTTMLTCYAKQGEV 57
           V   ++++ +V T+LVD Y + G +  A ++F       P  SLV+ + M++        
Sbjct: 275 VGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMIS-------- 326

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
                           CW        Q+G   E+L LF  M  E  +P+ VT V+VL+AC
Sbjct: 327 ---------------ACW--------QNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNAC 363

Query: 118 G--QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
              Q+G+  +   +   +E     + NV +GT L+  Y++   L  AR  FD +   DVV
Sbjct: 364 SMLQVGS-ATAFVLEQAMEVVSATRDNV-LGTTLLTTYARSNDLPRARATFDAIQSPDVV 421

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE---GRRFF 232
            WN+M   Y  H   ++AL LF  M    ++PS  TFI  L+ACA          G+R  
Sbjct: 422 SWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKR-I 480

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP---DSVLWGTLLGACRL 289
            ++ +E  +E         +N+ ++ G + +A  +    +I P   D + W ++L A   
Sbjct: 481 QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF--ERISPARRDCITWNSMLAAYGH 538

Query: 290 HG 291
           HG
Sbjct: 539 HG 540



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 43/237 (18%)

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR-NIKVNVQVGTALINMYSK 155
           R++A++      T   +L ACG++ AL+ G+ +H++I + R ++  +  + + LI M++K
Sbjct: 33  RIIADQGHCAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAK 92

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG+L +A  + DR     V    +MI  +  HG    A++LF+   R+ ++P+    I L
Sbjct: 93  CGNLAEAEALADRF--ASVYSCTAMIRAWMEHGRPDKAMELFD---RMEVRPNCHALIAL 147

Query: 216 LSACAHAGLVNEGRRFFNTMKDE---------------------------------YAIE 242
           ++AC+  G +  GRR  + + D                                   A +
Sbjct: 148 VNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASK 207

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE----PDSVLWGTLLGACRLHGNIAL 295
             V  +  M++   R G   EA +L  DM  +    P+SV + ++L +C   G ++L
Sbjct: 208 RDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSL 264


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/432 (45%), Positives = 279/432 (64%), Gaps = 4/432 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK G V  AR++FD MEE++ + WN M+ GY Q+G   +AL LF +M A + +PN VTA
Sbjct: 278 YAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTA 337

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--R 168
           + ++SAC  +G+   GR +H+++ +S+ + ++  +  A+++MY KCG L  A  +F+   
Sbjct: 338 LIMVSACSYLGSKHLGRKLHNFVISSK-MDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCE 396

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           + ++DV  WN +I GY +HG GK+AL+LF+ M    ++P+DITF  +LSAC+HAGL++EG
Sbjct: 397 LGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEG 456

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
           R+ F  M  + ++ P+++HY CMV++L RAG + EA++L+  +   P   +WG LL ACR
Sbjct: 457 RKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACR 515

Query: 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGC 348
           +HGN  LGE  A  L      ++G YVL+SNIYAA   W  V  VR  MK +G++K    
Sbjct: 516 IHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAF 575

Query: 349 SSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNS 408
           S IE   +VH F   D   P  +E+Y  +E +   +K  GYVP    VLHD+  + K++ 
Sbjct: 576 SVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHL 635

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           L  HSEKLAVAFG++    G  I++ KNLRVC DCH  FK IS   GRKI++RD NRFHH
Sbjct: 636 LNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHH 695

Query: 469 FVNGTCSCGDYW 480
           F  G CSCGDYW
Sbjct: 696 FQGGRCSCGDYW 707



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 142/244 (58%), Gaps = 5/244 (2%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK GE+  A  +FD M  +DVVCW  MI  Y Q     +AL+LFR+M  E    +E+TA
Sbjct: 177 YAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITA 236

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           ++V SA GQ+G       +H Y   +  I  +V VG +++ MY+KCG+++ ARLVFDR+ 
Sbjct: 237 ISVASAVGQLGDGRMAISVHGYAVLNGFIG-DVSVGNSIVGMYAKCGNVERARLVFDRME 295

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +++ + WNSM+ GY  +G   DAL LFN+M      P+ +T + ++SAC++ G  + GR+
Sbjct: 296 ERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRK 355

Query: 231 FFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTLLGACR 288
             N  +  +  I+  + +   ++++  + G ++ A ++  + ++ E D   W  L+    
Sbjct: 356 LHNFVISSKMDIDTTLRN--AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 413

Query: 289 LHGN 292
           +HG+
Sbjct: 414 VHGH 417



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 21/254 (8%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDM--------EEKDVVCWNVMIDGYAQHGLANEALVLF 95
           L  ++  Y+K G++ +AR LFD          +  +    N M+  YA  G + EA+ L+
Sbjct: 61  LARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLY 120

Query: 96  RRMLAEKVEPNEVTAVAVLSACG-QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
             M    V  N  T   VL  C  ++GA+  G  +H  +  +     ++ V  AL++MY+
Sbjct: 121 IYMQRMGVGVNNFTYPFVLKVCASELGAV-FGEVVHGQVVRT-GFGSDLFVEAALVDMYA 178

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           KCG + DA  VFDR+  +DVV W +MI  Y        AL LF +M        +IT I 
Sbjct: 179 KCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAIS 238

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIE----PKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           + SA    G + +GR   +     YA+       V     +V + ++ G VE A +LV D
Sbjct: 239 VASA---VGQLGDGRMAISV--HGYAVLNGFIGDVSVGNSIVGMYAKCGNVERA-RLVFD 292

Query: 271 MKIEPDSVLWGTLL 284
              E + + W ++L
Sbjct: 293 RMEERNGISWNSML 306


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/438 (45%), Positives = 290/438 (66%), Gaps = 6/438 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K GE   A  +F++M   D+V WN +I G+AQ+   +E L L++RM      
Sbjct: 153 SALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFV 212

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            ++ T  +VL AC  +  LE GR +H ++ +  +++ +N     AL++MY KCGSL+DA 
Sbjct: 213 ADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILN----NALLDMYCKCGSLEDAN 268

Query: 164 LVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           L+F R+  +KDV+ W++MI G A +GF  DAL+LF  M     KP+ IT +G+L AC+HA
Sbjct: 269 LLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHA 328

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLVN+G  +F +MK+ + I+P  EHYGC+++LL RAG+++EA KL+ +M  EPD+V W  
Sbjct: 329 GLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRI 388

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR+H N+ L    A+ ++  + A++GTY+LLSNIYA    W+ VA VR  M+ +GV
Sbjct: 389 LLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGV 448

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K+PGCS IE+S +VH F+ GD  HP+ +EI   L ++   L   GYVP T  VL D+  
Sbjct: 449 KKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEG 508

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +Q ++SL+ HSEKLA+ FGL+S     +I I KNLR+C DCH   KL+S+   R I++RD
Sbjct: 509 EQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRD 568

Query: 463 RNRFHHFVNGTCSCGDYW 480
             R+HHF  G CSCGDYW
Sbjct: 569 PIRYHHFRGGVCSCGDYW 586



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 9/281 (3%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           L  E +F+   +     + T++  Y K G +  AR LFD+M +++VV W  MI  Y+   
Sbjct: 37  LVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSN 96

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
           L ++AL     ML E V PN  T  +VL AC  +  L   R +H  I     ++ +V V 
Sbjct: 97  LNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKV-GLESDVFVR 152

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           +ALI+ YSK G   DA  VF+ +   D+VVWNS+I G+A +  G + L L+  M R    
Sbjct: 153 SALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFV 212

Query: 207 PSDITFIGLLSACAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
               T   +L AC    L+  GR+   + +K     +  +     ++++  + G +E+A 
Sbjct: 213 ADQSTLTSVLRACTGLALLELGRQVHVHVLK----YDQDLILNNALLDMYCKCGSLEDAN 268

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            L   M  E D + W T++     +G  A   K+ E + S+
Sbjct: 269 LLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M   ++  + +T   ++  C   GA++  R +H ++  S   +    +   LINMY K G
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHV-FSNGYEPKTFLINTLINMYVKFG 65

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            L +AR +FD + D++VV W +MI  Y+       AL     M R  ++P+  T+  +L 
Sbjct: 66  LLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLR 125

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC   GL+N  +   + +K    +E  V     +++  S+ G+  +A  +  +M I  D 
Sbjct: 126 AC--DGLLNLRQLHGSILK--VGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGDL 180

Query: 278 VLWGTLLGA 286
           V+W +++G 
Sbjct: 181 VVWNSIIGG 189



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 35/213 (16%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFA-TMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           D+DL ++ +L+D+Y + G +  A  LF   M ++ ++S +TM+   A+ G          
Sbjct: 245 DQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNG---------- 294

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                                 + +AL LF  M ++  +PN +T + VL AC   G +  
Sbjct: 295 ---------------------FSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVND 333

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGY 184
           G +    ++    I    +    +I++  + G L +A +L+ +  ++ D V W  ++   
Sbjct: 334 GWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGAC 393

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +H     A+    E+  ++L P+D     LLS
Sbjct: 394 RVHKNVDLAIYAAKEI--LKLDPADAGTYILLS 424


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/461 (45%), Positives = 295/461 (63%), Gaps = 3/461 (0%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           RG DV  A ++F  M  R+  S   ML  Y K GE+ +A+ +F +M  +D V W+ MI G
Sbjct: 184 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
            A +G  NE+ + FR +    + PNEV+   VLSAC Q G+ E G+ +H ++E +    +
Sbjct: 244 IAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI 303

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV-WNSMIVGYAMHGFGKDALQLFNEM 200
            V V  ALI+MYS+CG++  ARLVF+ + +K  +V W SMI G AMHG G++A++LFNEM
Sbjct: 304 -VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362

Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
               + P  I+FI LL AC+HAGL+ EG  +F+ MK  Y IEP++EHYGCMV+L  R+G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           +++AY  +  M I P +++W TLLGAC  HGNI L E++ + L   +  NSG  VLLSN 
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNA 482

Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
           YA  G W  VA +R  M  + ++K    S +E+   +++F AG+ +     E +  L+EI
Sbjct: 483 YATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEI 542

Query: 381 NGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
              LK E GY P+    L+D+ E++K++ +  HSEKLA+AF L     G +I+IVKNLR+
Sbjct: 543 ILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRI 602

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCHAV KL SK  G +I++RDRNRFH F +G+CSC DYW
Sbjct: 603 CRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/434 (44%), Positives = 276/434 (63%), Gaps = 10/434 (2%)

Query: 56  EVAAARVLFDDMEEKDVVCWNVMIDGYAQ---------HGLANEALVLFRRMLAEKVEPN 106
            +A+ R +FD +   D+  WN ++  YA+            A+  L LF RML+  +EPN
Sbjct: 159 RIASCRRVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPN 218

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E+T VAV+ ACG++GA+  G W H+Y    R + VN  V TAL+ MY+ CG L  A  VF
Sbjct: 219 EITLVAVIGACGELGAVSHGVWAHTYAVK-RRLAVNCIVATALVEMYAGCGRLDLAEQVF 277

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
              +D+D   +N+M+ G A+HG G+ AL L + M    +    +T + ++ ACAHAGLV+
Sbjct: 278 AAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVD 337

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG  +F+ M+ E+ IEP++EHYGCM+++LSRAG++  A KL+ +M I P++ ++ +L+ A
Sbjct: 338 EGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRA 397

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +HG + LGEK+   L+     +SG +VL+SN YA    W+   + R  MK  G+ K P
Sbjct: 398 CGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNP 457

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S ++++  +HEFL GD  HP SKEIY M+EEI   L   G    T   L D+ E+ K 
Sbjct: 458 GSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKA 517

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
           ++L  HSE+LA+AF LI++ PG  I+I+KNLRVC DCH   KL+S+  GR+I+MRDR RF
Sbjct: 518 DTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRF 577

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSCGD+W
Sbjct: 578 HHFRDGVCSCGDFW 591



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YA  G +  A  +F    ++D  C+N M+ G A HG    AL L  RM    V 
Sbjct: 258 TALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVP 317

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
            + VT ++V+ AC   G ++ G      +E    I+  ++    +I+M S+ G L +A +
Sbjct: 318 VDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEK 377

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           L+ + +   +  ++ S+I    +HG  +   ++  E+  +RL+P D
Sbjct: 378 LIHEMLIVPNAAIYRSLIRACGIHGKLELGEKMIAEL--MRLEPDD 421


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/448 (44%), Positives = 293/448 (65%), Gaps = 19/448 (4%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F LDKD +V TSL+++Y+  GD+ SA+++F     + L +  +++  YAK G +  AR L
Sbjct: 91  FGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKL 150

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-----VEPNEVTAVAVLSACG 118
           FD+M E++V+ W+ +I+GY   G   EAL LFR M   K     V PNE T   VLSACG
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACG 210

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVW 177
           ++GALE G+W+H+YI+   ++++++ +GTALI+MY+KCGSL+ A+ VF+ + + KDV  +
Sbjct: 211 RLGALEQGKWVHAYIDK-YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAY 269

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           ++MI   AM+G   +  QLF+EM     + P+ +TF+G+L AC H GL+NEG+ +F  M 
Sbjct: 270 SAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMI 329

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           +E+ I P ++HYGCMV+L  R+G ++EA   +  M +EPD ++WG+LL   R+ G+I   
Sbjct: 330 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 389

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E   + LI  +  NSG YVLLSN+YA  G W            +G+ K PGCS +E+   
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRW-----------MEGINKVPGCSYVEVEGV 438

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           VHEF+ GD    +S+ IY ML+EI   L+  GYV  T+ VL D+ EK K+ +L  HSEKL
Sbjct: 439 VHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKL 498

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCH 444
           A+AF L+ T+PGT ++I+KNLR+C DCH
Sbjct: 499 AIAFCLMKTRPGTPVRIIKNLRICGDCH 526



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 32/188 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K+ ++ D+ + T+L+D+YA+ G +  A+++F  +  +                       
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK----------------------- 263

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIG 121
                  KDV  ++ MI   A +GL +E   LF  M  ++ + PN VT V +L AC   G
Sbjct: 264 -------KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRG 316

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
            +  G+     +     I  ++Q    ++++Y + G +K+A   +     + DV++W S+
Sbjct: 317 LINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSL 376

Query: 181 IVGYAMHG 188
           + G  M G
Sbjct: 377 LSGSRMLG 384


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/406 (47%), Positives = 279/406 (68%), Gaps = 1/406 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y+K GE+  A  LF+ +  KDV+ WN +I GY    L  EAL+LF+ ML    
Sbjct: 261 VNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 320

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
            PN+VT +++L AC  +GA++ GRWIH YI+   + +     + T+LI+MY+KCG ++ A
Sbjct: 321 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAA 380

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  K +  WN+MI G+AMHG    +  +F+ M +  ++P DITF+GLLSAC+H+
Sbjct: 381 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHS 440

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G+++ GR  F +M  +Y + PK+EHYGCM++LL  +G  +EA +++  M++EPD V+W +
Sbjct: 441 GMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCS 500

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++HGN+ LGE  A+ LI     N G+YVLLSNIYA  G W+ VA  R L+ +KG+
Sbjct: 501 LLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGM 560

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K PGCSSIE+ + VHEF+ GD  HP+++EIY MLEE+   L+  G+VP T  VL ++ E
Sbjct: 561 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEE 620

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           + K+ +L  HSEKLA+AFGLIST+PGT + IVKNLRVC +CH  +K
Sbjct: 621 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 178/333 (53%), Gaps = 36/333 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DLYV TSL+ +Y + G +  A K+F   P R +VS T ++  YA +G +  A+
Sbjct: 118 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQ 177

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD++  KDVV WN MI GYA+ G   EAL LF+ M+   V P+E T V V+SAC Q G
Sbjct: 178 KMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 237

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ++E GR +HS+I++      N+++  ALI++YSKCG L+ A  +F+ +  KDV+ WN++I
Sbjct: 238 SIELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLI 296

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
            GY      K+AL LF EM R    P+D+T + +L ACAH G ++ GR            
Sbjct: 297 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 356

Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
                    ++ D YA               +   +  +  M+   +  G+ + ++ +  
Sbjct: 357 VANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFS 416

Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI 299
            M+   IEPD + +  LL AC   G + LG  I
Sbjct: 417 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHI 449



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 130/254 (51%), Gaps = 32/254 (12%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+ ++E +++ WN M  G+A       AL L+  M++  + PN  T   +L +C +  A
Sbjct: 47  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 106

Query: 123 LESGRWIHS--------------------YIENSR----------NIKVNVQVGTALINM 152
            + G+ IH                     Y++N R          +   +V   TALI  
Sbjct: 107 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKG 166

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           Y+  G +++A+ +FD +  KDVV WN+MI GYA  G  K+AL+LF +M +  ++P + T 
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + ++SACA +G +  GR+  + + D++     ++    +++L S+ G++E A  L   + 
Sbjct: 227 VTVVSACAQSGSIELGRQVHSWI-DDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285

Query: 273 IEPDSVLWGTLLGA 286
            + D + W TL+G 
Sbjct: 286 YK-DVISWNTLIGG 298



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 32/176 (18%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           TSL+D+YA+ GD+ +A ++F ++  +SL S   M                          
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAM-------------------------- 398

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
                I G+A HG A+ +  +F RM    +EP+++T V +LSAC   G L+ GR I   +
Sbjct: 399 -----IFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 453

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
                +   ++    +I++    G  K+A  + + +  + D V+W S++    MHG
Sbjct: 454 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 509



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 34/217 (15%)

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ + + ++++WN+M  G+A+      AL+L+  M  + L P+  TF  LL +CA +  
Sbjct: 47  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 106

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGC---------MVNLLSRAGQVEEAYKLVMDMKIEP 275
             EG++          I   V   GC         ++++  + G++E+A+K V D     
Sbjct: 107 FKEGQQ----------IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK-VFDESPHR 155

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           D V +  L+      G I   +K+ + +  +++ +    +   + YA  GN+     +  
Sbjct: 156 DVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMI---SGYAETGNYKEALELFK 212

Query: 336 LMKEKGVQKE--------PGCS---SIELSNKVHEFL 361
            M +  V+ +          C+   SIEL  +VH ++
Sbjct: 213 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWI 249


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 305/476 (64%), Gaps = 10/476 (2%)

Query: 9    DLYVSTSLVDLYA------RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
            D+Y  TS+V   A      +G DV S   +       +L     ++  YAK G V  AR+
Sbjct: 671  DIYTVTSIVHACACSSSLDKGRDVHSY--VIKNGMGSNLPVTNALINMYAKCGSVEEARL 728

Query: 63   LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            +F  +  KD+V WN MI GY+Q+ L NEAL LF  M  ++ +P+++T   VL AC  + A
Sbjct: 729  VFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAA 787

Query: 123  LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            L+ GR IH +I   R    ++ V  AL++MY+KCG L  A+L+FD +  KD++ W  MI 
Sbjct: 788  LDKGREIHGHILR-RGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 846

Query: 183  GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            GY MHGFG +A+  FNEM    ++P + +F  +L+AC+H+GL+NEG +FFN+M++E  +E
Sbjct: 847  GYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVE 906

Query: 243  PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
            PK+EHY C+V+LL+R G + +AYK +  M I+PD+ +WG LL  CR+H ++ L EK+AE+
Sbjct: 907  PKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEH 966

Query: 303  LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
            +      N+  YV+L+N+YA    W+ V ++R  M+++G ++ PGCS IE+  K + F+A
Sbjct: 967  IFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 1026

Query: 363  GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
            G+ +HP++K I ++L ++   ++ E Y    + VL +  + +K+     HSEK A+AFG+
Sbjct: 1027 GNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGI 1086

Query: 423  ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
            ++  PG ++++ KN RVC DCH + K +SK T R+I++RD NRFHHF +G CSC D
Sbjct: 1087 LNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 142/283 (50%), Gaps = 9/283 (3%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLF 64
           + Y  T ++  +A  G V   +++   + +    S T    +++  Y K G V +A  LF
Sbjct: 469 NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 528

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
           D++ E DVV WN MI+G   +G +   L +F +ML   VE +  T V+VL A   IG L 
Sbjct: 529 DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLS 588

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            GR +H +   +      V     L++MYSKCG+L  A  VF ++ D  +V W S I  Y
Sbjct: 589 LGRALHGFGVKA-CFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAY 647

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEP 243
              G   DA+ LF+EM    ++P   T   ++ ACA +  +++GR   +  +K+      
Sbjct: 648 VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 707

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            V +   ++N+ ++ G VEEA +LV       D V W T++G 
Sbjct: 708 PVTN--ALINMYAKCGSVEEA-RLVFSKIPVKDIVSWNTMIGG 747



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 137/310 (44%), Gaps = 35/310 (11%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y   G++   R +FD +    V  WN+++  YA+ G   E++ LF++M    V  N  T 
Sbjct: 414 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 473

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL     +G ++  + +H Y+        N  V  +LI  Y K G ++ A  +FD ++
Sbjct: 474 TCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 532

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           + DVV WNSMI G  ++GF  + L++F +M  + ++    T + +L A A+ G ++ GR 
Sbjct: 533 EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRA 592

Query: 231 ---------------FFNTMKDEYAI---------------EPKVEHYGCMVNLLSRAGQ 260
                          F NT+ D Y+                +  +  +   +    R G 
Sbjct: 593 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGL 652

Query: 261 VEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVL 316
             +A  L  +M+   + PD     +++ AC    ++  G  +  Y+I   + +N      
Sbjct: 653 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 712

Query: 317 LSNIYAAIGN 326
           L N+YA  G+
Sbjct: 713 LINMYAKCGS 722



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 14/256 (5%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N  I+ + + G    A+ L  +  + ++  N  +  +VL  C +  +LE G+ +HS I  
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVII- 396

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           S  I ++  +G  L+ MY  CG L   R +FD++ +  V +WN ++  YA  G  ++++ 
Sbjct: 397 SNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 456

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           LF +M ++ +  +  TF  +L   A  G V E +R        Y ++        +VN L
Sbjct: 457 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG-----YVLKLGFGSNTAVVNSL 511

Query: 256 SRA----GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG-EKIAEYLISQNLAN 310
             A    G VE A+ L  ++  EPD V W +++  C ++G    G E   + LI     +
Sbjct: 512 IAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVD 570

Query: 311 SGTYVLLSNIYAAIGN 326
             T V +   +A IGN
Sbjct: 571 LTTLVSVLVAWANIGN 586


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 285/479 (59%), Gaps = 31/479 (6%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            VK   + D +V  +L+D+YA+ G + SAE LF            T  T            
Sbjct: 558  VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFN----------KTDFT------------ 595

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                    KD V WNV+I  Y Q+G A EA+  F +M  E   PN VT V+VL A   + 
Sbjct: 596  --------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLA 647

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            A   G   H+ I     +  N  VG +LI+MY+KCG L  +  +F+ ++ KD V WN+M+
Sbjct: 648  AFREGMAFHACIIQMGFLS-NTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAML 706

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             GYA+HG G  A+ LF+ M   +++   ++F+ +LSAC H GLV EGR+ F++M D+Y I
Sbjct: 707  SGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHI 766

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            +P +EHY CMV+LL RAG  +E    +  M +EPD+ +WG LLG+CR+H N+ LGE   +
Sbjct: 767  KPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALD 826

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +L+     N   +V+LS+IYA  G W    + R+ M + G++K PGCS +EL NKVH F 
Sbjct: 827  HLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFR 886

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP+ + ++++   +   ++  GYVP    VL ++ E+ K+  L  HSE+LA+ F 
Sbjct: 887  VGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFA 946

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L++T PG++I+IVKNLRVC DCH   K ISK T R+I++RD  RFHHF +G CSC DYW
Sbjct: 947  LLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 132/248 (53%), Gaps = 2/248 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK GE   A+ LF  ++ +D+V W+ +I    Q G   EAL LF+ M  +K++
Sbjct: 368 TPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK 427

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT +++L AC  +  L+ G+ IH +   + ++  ++  GTAL++MY+KCG    A  
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALT 486

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F+R++ +D+V WNS+I GYA  G   +A+ +F ++    + P   T +G++ ACA    
Sbjct: 487 TFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLND 546

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +++G      +  +   E        ++++ ++ G +  A  L        D V W  ++
Sbjct: 547 LDQGTCIHGLIV-KLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605

Query: 285 GACRLHGN 292
            A   +G+
Sbjct: 606 AAYMQNGH 613



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G+V  AR +FD M ++D V W  M+ GYA +G   E L LF +M    V  N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +V+AV+   A  +   LE G+ IH      R I  ++ V T L+ MY+KCG  + A+ +F
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQR-IDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  +D+V W+++I      G+ ++AL LF EM   ++KP+ +T + +L ACA   L+ 
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 227 EGRRF--FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            G+    F    D   ++  +     +V++ ++ G    A      M    D V W +L+
Sbjct: 448 LGKSIHCFTVKAD---MDSDLSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLI 503



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 7/244 (2%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           S+T ++  Y+   +   AR +FD       + WN MI  Y +    NEAL ++  M+ + 
Sbjct: 65  SITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKG 124

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +EP++ T   VL AC     L+ G W H  I+  R ++ +V +G  L++MYSK G LK A
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR-RGLERDVFIGAGLVDMYSKMGDLKRA 183

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R VFD++  +DVV WN+MI G +      +A+  F  M  + ++PS ++ + L       
Sbjct: 184 REVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKL 243

Query: 223 GLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
             +   R       + +++          +++L S+ G V+ A + V D  ++ D V WG
Sbjct: 244 SNIELCRSIHGYVFRRDFSSAVS----NGLIDLYSKCGDVDVARR-VFDQMVDQDDVSWG 298

Query: 282 TLLG 285
           T++ 
Sbjct: 299 TMMA 302



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 145/309 (46%), Gaps = 37/309 (11%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y+K G++  AR +FD M ++DVV WN MI G +Q     EA+  FR M    VEP+ V+ 
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           + +     ++  +E  R IH Y+   R+    V  G  LI++YSKCG +  AR VFD++ 
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYVFR-RDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMV 290

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           D+D V W +M+ GYA +G   + L+LF++M    ++ + ++ +    A A    + +G+ 
Sbjct: 291 DQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE 350

Query: 231 FFNTM------KDEYAIEPKVEHYG------------------------CMVNLLSRAGQ 260
                       D     P +  Y                          ++  L + G 
Sbjct: 351 IHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGY 410

Query: 261 VEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVL 316
            EEA  L  +M   K++P+ V   ++L AC     + LG+ I  + +  ++ ++  T   
Sbjct: 411 PEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTA 470

Query: 317 LSNIYAAIG 325
           L ++YA  G
Sbjct: 471 LVSMYAKCG 479


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 284/438 (64%), Gaps = 9/438 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y K G+++AA+  FD +   D V W  +I G  ++G    AL +F +M    V P+
Sbjct: 565 ILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPD 624

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDA 162
           E T   +  A   + ALE GR IH+       +K+N      VGT+L++MY+KCGS+ DA
Sbjct: 625 EFTIATLAKASSCLTALEQGRQIHA-----NALKLNCTSDPFVGTSLVDMYAKCGSIDDA 679

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +F R+   ++  WN+M+VG A HG GK+ALQLF +M  + +KP  +TFIG+LSAC+H+
Sbjct: 680 YCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHS 739

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV+E  ++  +M  +Y I+P++EHY C+ + L RAG V+EA  L+  M +E  + ++ T
Sbjct: 740 GLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRT 799

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACR+ G+   G+++A  L+     +S  YVLLSN+YAA   WD +   RT+MK   V
Sbjct: 800 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 859

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K+PG S IE+ NK+H F+  D  +P+++ IY  ++++   +K EGYVP+T   L D+ E
Sbjct: 860 KKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEE 919

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+ +L  HSEKLAVAFGL+ST P T I+++KNLRVC DCH   K ISK   R+I++RD
Sbjct: 920 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRD 979

Query: 463 RNRFHHFVNGTCSCGDYW 480
            NRFH F +G CSCGDYW
Sbjct: 980 ANRFHRFKDGICSCGDYW 997



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 135/263 (51%), Gaps = 11/263 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K  ++  AR +F++M E+D++ WN +I G AQ  L  EA+ LF ++L   ++P
Sbjct: 362 SLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKP 421

Query: 106 NEVTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           +  T  +VL A   +   L   + IH +   + N+  +  V TALI+ YS+   +K+A +
Sbjct: 422 DHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNV-ADSFVSTALIDAYSRNRCMKEAEV 480

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F R N+ D+V WN+M+ GY     G   L+LF  M +   +  D T   +L  C     
Sbjct: 481 LFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFA 539

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +N+G++     +K  Y ++  V     ++++  + G +  A +   D    PD V W TL
Sbjct: 540 INQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAA-QFAFDSIPVPDDVAWTTL 596

Query: 284 LGACRLHGNIALGEKIAEYLISQ 306
           +  C  +G     E+ A ++ SQ
Sbjct: 597 ISGCIENGE----EERALHVFSQ 615



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 125/253 (49%), Gaps = 7/253 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           S VS T ++  Y++   +  A VLF      D+V WN M+ GY Q    ++ L LF  M 
Sbjct: 459 SFVS-TALIDAYSRNRCMKEAEVLFG-RNNFDLVAWNAMMSGYTQSHDGHKTLELFALMH 516

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
            +    ++ T   VL  CG + A+  G+ +H+Y   S    +++ V + +++MY KCG +
Sbjct: 517 KQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGDM 575

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
             A+  FD +   D V W ++I G   +G  + AL +F++M  + + P + T   L  A 
Sbjct: 576 SAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKAS 635

Query: 220 AHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           +    + +GR+   N +K     +P V     +V++ ++ G +++AY L   +++  +  
Sbjct: 636 SCLTALEQGRQIHANALKLNCTSDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-NIT 692

Query: 279 LWGTLLGACRLHG 291
            W  +L     HG
Sbjct: 693 AWNAMLVGLAQHG 705



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 29/279 (10%)

Query: 37  PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA-----NEA 91
           P+R LV+   +++ Y+K G +  AR +FD M E+D+V WN ++  YAQ          EA
Sbjct: 79  PERFLVN--NLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEA 136

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGT 147
            +LFR +  + V  + +T   +L  C   G + +    H Y       K+ +     V  
Sbjct: 137 FLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYA-----CKIGLDGDDFVAG 191

Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
           AL+N+Y K G +K+ R++F+ +  +DVV+WN M+  Y   GF ++A+ L +      L P
Sbjct: 192 ALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHP 251

Query: 208 SDITFIGLLSAC----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           ++IT + LLS      + AG V      F    D  A+   +     +   L  AGQ   
Sbjct: 252 NEIT-LRLLSRISGDDSEAGQVKS----FENGNDASAVSEIISRNKILSGYL-HAGQYSA 305

Query: 264 AYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKI 299
             K  MDM    +E D V +  +L       ++ALG+++
Sbjct: 306 LLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQV 344



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 39/256 (15%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------E 56
           K  LD D +V+ +LV++Y + G V     LF  MP R +V    ML  Y + G      +
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239

Query: 57  VAAA-----------------RVLFDDMEE---------------KDVVCWNVMIDGYAQ 84
           +++A                 R+  DD E                 +++  N ++ GY  
Sbjct: 240 LSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLH 299

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
            G  +  L  F  M+   +E ++VT + VL+   ++ +L  G+ +H  +     + + + 
Sbjct: 300 AGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC-MALKLGLDLMLT 358

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V  +LINMY K   +  AR VF+ ++++D++ WNS+I G A      +A+ LF ++ R  
Sbjct: 359 VSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG 418

Query: 205 LKPSDITFIGLLSACA 220
           LKP   T   +L A +
Sbjct: 419 LKPDHYTMTSVLKAAS 434



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 95/175 (54%), Gaps = 5/175 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK G +  A  LF  +E  ++  WN M+ G AQHG   EAL LF++M +  ++
Sbjct: 664 TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIK 723

Query: 105 PNEVTAVAVLSACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           P++VT + VLSAC   G + E+ ++I S +     IK  ++  + L +   + G +K+A 
Sbjct: 724 PDKVTFIGVLSACSHSGLVSEAYKYIRS-MHRDYGIKPEIEHYSCLADALGRAGLVKEAE 782

Query: 164 LVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            + D ++ +    ++ +++    + G  +   ++  ++  + L+P D +   LLS
Sbjct: 783 NLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKL--LELEPLDSSAYVLLS 835


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/436 (44%), Positives = 275/436 (63%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T+L+ YAK G +  A   F++M+ +D V +  +I GY Q+G + E L +F  M    + P
Sbjct: 365 TLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINP 424

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
            + T  +VL AC  +  L  G   H Y         +  +  ALI+MY+KCG +  AR V
Sbjct: 425 EKATLASVLPACAHLAGLHYGSCSHCYAIIC-GFTADTMICNALIDMYAKCGKIDTARKV 483

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FDR++ + +V WN+MI+ Y +HG G +AL LF+ M    LKP D+TFI L+SAC+H+GLV
Sbjct: 484 FDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLV 543

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG+ +FN M  ++ I P++EHY CMV+LLSRAG  +E +  +  M +EPD  +WG LL 
Sbjct: 544 AEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLS 603

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR++ N+ LGE +++ +      ++G +VLLSN+Y+A+G WD  A+VR   KE+G +K 
Sbjct: 604 ACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKS 663

Query: 346 PGCSSIELSNKVHEFLAGDLR-HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           PGCS IE+S  VH FL G  R HP+  +I   L+E+   +K  GY  ++  V  D+ E++
Sbjct: 664 PGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEE 723

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+AFG++S  P   I + KNLRVC DCH   K IS  T R I +RD +
Sbjct: 724 KERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDAS 783

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G C+CGD+W
Sbjct: 784 RFHHFKDGICNCGDFW 799



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 4/247 (1%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           V    ++  Y    E+  AR +FD M    K+VV WN++I  YA +G   EA+ L+ +ML
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              + PN  T   VL AC  +     GR IH  I+  R ++ NV V TAL++ Y+KCG L
Sbjct: 112 GYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLR-LESNVYVSTALVDFYAKCGCL 170

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            DA+ VFD+++ +DVV WNSMI G+++H    D +       +  + P+  T +G+L A 
Sbjct: 171 DDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAV 230

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A    +  G+           +   V   G ++++  +   ++ A ++   M I  + V 
Sbjct: 231 AQVNSLRHGKEIHGFCVRRGFVGDVVVGTG-ILDVYGKCQCIDYARRIFDMMGIVKNEVT 289

Query: 280 WGTLLGA 286
           W  ++GA
Sbjct: 290 WSAMVGA 296



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 162/386 (41%), Gaps = 86/386 (22%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +  L+ ++YVST+LVD YA+ G +  A+++F  M +R                       
Sbjct: 147 RLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR----------------------- 183

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                   DVV WN MI G++ H  + + +      +   V PN  T V VL A  Q+ +
Sbjct: 184 --------DVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNS 235

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVVWNSMI 181
           L  G+ IH +    R    +V VGT ++++Y KC  +  AR +FD +   K+ V W++M+
Sbjct: 236 LRHGKEIHGFCVR-RGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMV 294

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG--------------------------- 214
             Y +  F ++AL+LF   C++ +   D+  +                            
Sbjct: 295 GAYVVCDFMREALELF---CQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYA 351

Query: 215 --------------LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
                         LLS  A  G++N   RFFN M    A+      +  +++   + G 
Sbjct: 352 IKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS-----FTAIISGYVQNGN 406

Query: 261 VEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEY-LISQNLANSGTYVL 316
            EE  ++ ++M+   I P+     ++L AC     +  G     Y +I    A++     
Sbjct: 407 SEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNA 466

Query: 317 LSNIYAAIGNWDGVARVRTLMKEKGV 342
           L ++YA  G  D   +V   M ++G+
Sbjct: 467 LIDMYAKCGKIDTARKVFDRMHKRGI 492



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 17/256 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK- 102
           T +L  Y K   +  AR +FD M   K+ V W+ M+  Y       EAL LF ++L  K 
Sbjct: 259 TGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKD 318

Query: 103 --VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             +  + VT   V+  C  +  L +G  +H Y   S  + +++ VG  L++MY+KCG + 
Sbjct: 319 DVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFV-LDLMVGNTLLSMYAKCGIIN 377

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A   F+ ++ +D V + ++I GY  +G  ++ L++F EM    + P   T   +L ACA
Sbjct: 378 GAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACA 437

Query: 221 H-AGLVNEGRRFFNTMKDEYAI----EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           H AGL       + +    YAI             ++++ ++ G+++ A K V D   + 
Sbjct: 438 HLAGL------HYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARK-VFDRMHKR 490

Query: 276 DSVLWGTLLGACRLHG 291
             V W T++ A  +HG
Sbjct: 491 GIVSWNTMIIAYGIHG 506



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 32/174 (18%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  +  +L+D+YA+ G + +A K+F  M +R +VS  TM+  Y   G    A +LFD+M+
Sbjct: 460 DTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQ 519

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                                          +E ++P++VT + ++SAC   G +  G++
Sbjct: 520 -------------------------------SEGLKPDDVTFICLISACSHSGLVAEGKY 548

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMI 181
             + +     I   ++    ++++ S+ G  K+     +++  + DV VW +++
Sbjct: 549 WFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALL 602


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/438 (43%), Positives = 283/438 (64%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K GE+  A  LF  M E+D+V WN +I    Q G +++AL  FR M    ++
Sbjct: 174 TELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIK 233

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ VT V+ LSACG +G LE+G  I+ +      I  N+ V  A ++M +KCG +  A  
Sbjct: 234 PDSVTIVSALSACGHLGCLETGEEIYEFARE-EGIDSNIIVHNARLDMCAKCGDMDKAMN 292

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  ++V+ W+++I GYA++G  + AL LF+ M    ++P+ +TF+ +LSAC+H G 
Sbjct: 293 LFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGR 352

Query: 225 VNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           VNEG ++FN M   D+  I+P+ EHY CMV+LL R+G +EEAY  +  M IE D  +WG 
Sbjct: 353 VNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGA 412

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGAC +H NI LG+ +A+ L       +  +VLLSN+YAA G W  V +VR  MK+KG 
Sbjct: 413 LLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGA 472

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K    SS+E + ++H    GD  HP+S  I   LE++   +K+ GY+P+T  V HD+ +
Sbjct: 473 RKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVED 532

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+++L  HSEKLA+AF LI+  P   I+++KNLR+C DCH   KL+S+ T R+I+MRD
Sbjct: 533 EEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRD 592

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFHHF NG CSC D+W
Sbjct: 593 KNRFHHFKNGICSCKDFW 610



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 126/237 (53%), Gaps = 3/237 (1%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+++ AR LFD+M +     WN ++ GY ++G+ ++A+ ++ +M    V P+  T   V+
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            AC ++  L +G  +H ++     ++    V T L+ MY K G L  A  +F  + ++D+
Sbjct: 143 KACAELAELWAGLGMHGHVVK-HGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDL 201

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V WN++I      GF   ALQ F EM    +KP  +T +  LSAC H G +  G   +  
Sbjct: 202 VAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEF 261

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            ++E  I+  +  +   +++ ++ G +++A  L  +M  + + + W T++G   ++G
Sbjct: 262 AREE-GIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMP-QRNVISWSTVIGGYAVNG 316



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 34/185 (18%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D ++ V  + +D+ A+ GD+  A  LF  MPQR+++S +T++  YA  GE         
Sbjct: 267 IDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGE--------- 317

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                                 + +AL LF RM  + V+PN VT +AVLSAC   G +  
Sbjct: 318 ----------------------SEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNE 355

Query: 126 GRWIHSYIENS--RNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIV 182
           G    +++  S  +NI+   +    ++++  + G L++A   +     + D  +W +++ 
Sbjct: 356 GWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLG 415

Query: 183 GYAMH 187
             A+H
Sbjct: 416 ACAIH 420


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/437 (45%), Positives = 276/437 (63%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y K G V  +  +F  +  KD+V W+ M+ G AQ   + +A+ +F +++ E V+
Sbjct: 443 TALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVK 502

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  +V++AC    A +E G+ IH+    S      + V +AL+ MYSK G+++ A 
Sbjct: 503 PNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNA-LCVSSALLTMYSKKGNIESAE 561

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF R  ++D+V WNSMI GY  HG  K AL++F  M    L   D+TFIG+L+AC HAG
Sbjct: 562 KVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAG 621

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG ++FN M  +Y I+ K EHY CMV+L SRAG  ++A  ++  M       +W TL
Sbjct: 622 LVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTL 681

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACR+H N+ LG+  AE L+S    ++  YVLLSNI+A  GNW+  A VR LM E+ V+
Sbjct: 682 LAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVK 741

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS IE+ N++  FLAGD+ HP S  +Y  LEE++  LK  GY P T  V HD+ E+
Sbjct: 742 KEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEE 801

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  L  HSE+LA+A+GLI+  PG  I+I KNLR+C DCH V +LIS    R +++RD 
Sbjct: 802 HKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDS 861

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G CSCG YW
Sbjct: 862 NRFHHFKGGVCSCGGYW 878



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 24/253 (9%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K  +    R +FD+M  K+VV W  ++ GYA++GL +E + L  +M  E V 
Sbjct: 143 TSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVN 202

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T   VL A      +E G  +H+ I  +   +    V  ALI MY K   + DA  
Sbjct: 203 PNGFTFATVLGALADESIIEGGVQVHAMIVKN-GFEFTTFVCNALICMYLKSEMVGDAEA 261

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA---- 220
           VFD +  +D V WN MI GYA  GF  +  Q+F+ M    +K S   F   L  C+    
Sbjct: 262 VFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRE 321

Query: 221 -------HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
                  H G+V  G  F   ++    +              S+   V+EA+KL      
Sbjct: 322 LNFTKQLHCGVVKNGYEFAQDIRTALMVT------------YSKCSSVDEAFKLFSMADA 369

Query: 274 EPDSVLWGTLLGA 286
             + V W  ++G 
Sbjct: 370 AHNVVTWTAMIGG 382



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 137/270 (50%), Gaps = 17/270 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           T ++  Y+K   V  A  LF   +   +VV W  MI G+ Q+    +A+ LF +M  E V
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGV 404

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T   VL+  G+  +L S   +H+ I  +   KV   V TAL++ Y K G++ ++ 
Sbjct: 405 RPNHFTYSTVLA--GKPSSLLS--QLHAQIIKAYYEKVP-SVATALLDAYVKTGNVVESA 459

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHA 222
            VF  +  KD+V W++M+ G A     + A+++F ++ +  +KP++ TF  +++AC + A
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
             V  G++   T     A++    +  C    ++ + S+ G +E A K V   + E D V
Sbjct: 520 ATVEHGKQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESAEK-VFTRQEERDIV 573

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            W +++     HG+     ++ + + +Q L
Sbjct: 574 SWNSMITGYGQHGDAKKALEVFQIMQNQGL 603



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 3/227 (1%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A  LFD+   KD+  +N ++  ++++    EAL LF+ + +  +  + +T    L  CG 
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +     GR +H     S  ++ +V VGT+L++MY K    +D R +FD +  K+VV W S
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTS 175

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           ++ GYA +G   + + L N+M    + P+  TF  +L A A   ++ EG    + M  + 
Sbjct: 176 LLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESII-EGGVQVHAMIVKN 234

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
             E        ++ +  ++  V +A + V D  +  DSV W  ++G 
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDA-EAVFDSMVVRDSVTWNIMIGG 280



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 40/220 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK      L VS++L+ +Y++ G++ SAEK+F    +R +VS  +M+T Y          
Sbjct: 533 VKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY---------- 582

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                 QHG A +AL +F+ M  + +  ++VT + VL+AC   G
Sbjct: 583 ---------------------GQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAG 621

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +E G    + +    +I    +  + ++++YS+ G    A  + + +       +W ++
Sbjct: 622 LVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTL 681

Query: 181 IVGYAMH---GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +H     GK A +       + L+P+D     LLS
Sbjct: 682 LAACRVHRNLELGKLAAEKL-----VSLQPNDAVGYVLLS 716


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/471 (42%), Positives = 301/471 (63%), Gaps = 9/471 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQR-----SLVSLTTMLTCYAKQGEVAAARVL 63
           DL    SL  ++++  D   +  +   + +R      +V    ++  YAK G +  A  +
Sbjct: 322 DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGA 122
           FD +  KD + WN ++ GY Q+GLA+EA+  +  M       PN+ T V+++ A   +GA
Sbjct: 382 FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 123 LESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L+ G  IH+  I+NS  + ++V V T LI++Y KCG L+DA  +F  +     V WN++I
Sbjct: 442 LQQGMKIHAKLIKNS--LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAII 499

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
               +HG G++ALQLF +M   R+K   ITF+ LLSAC+H+GLV+EG++ F+ M+ EY I
Sbjct: 500 ASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGI 559

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           +P ++HYGCMV+LL RAG +E+AY+LV +M I+PD+ +WG LL AC+++GN  LG   ++
Sbjct: 560 KPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASD 619

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+  +  N G YVLLSNIYA    W+GV +VR+L +++G++K PG SS+ + +K   F 
Sbjct: 620 RLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFY 679

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            G+  HPK  EIY  L+ ++  +K+ GYVP    V  DI E +K+  L  HSE+LA+AFG
Sbjct: 680 TGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFG 739

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           +IST P + I+I KNLRVC DCH   K IS+ + R+I++RD NRFHHF +G
Sbjct: 740 IISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 164/310 (52%), Gaps = 12/310 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G +  A+++FD ME +D+V WN +I  Y Q+   + AL  F+ M    + P+
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T V++ S   Q+      R I  ++     +  +V +G AL+NMY+K G +  A  VF
Sbjct: 323 LLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF 382

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGL 224
           D++  KD + WN+++ GY  +G   +A+  +N M  CR  + P+  T++ ++ A +H G 
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGA 441

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +G +     +K+   ++  V    C+++L  + G++E+A  L  ++  +  SV W  +
Sbjct: 442 LQQGMKIHAKLIKNSLYLDVFVA--TCLIDLYGKCGRLEDAMSLFYEIPRD-TSVPWNAI 498

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLM-KEKG 341
           + +  +HG      ++ + ++++ + A+  T+V L +  +  G  D   +   +M KE G
Sbjct: 499 IASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYG 558

Query: 342 VQ---KEPGC 348
           ++   K  GC
Sbjct: 559 IKPSLKHYGC 568



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 140/284 (49%), Gaps = 8/284 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y++ G +  A  +F DM  KDV  WN MI G+ Q+G A  AL +  RM  E V+ 
Sbjct: 161 SLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKM 220

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + +T  ++L  C Q   + +G  IH ++     +  +V V  ALINMYSK G L+DA++V
Sbjct: 221 DTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKFGRLQDAQMV 279

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD++  +D+V WNS+I  Y  +     AL+ F  M    ++P  +T + L S  +     
Sbjct: 280 FDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQ 339

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
              R     +     ++  V     +VN+ ++ G +  A+  V D     D++ W TL+ 
Sbjct: 340 RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHT-VFDQLPRKDTISWNTLVT 398

Query: 286 ACRLHGNIALGEKIAEYLISQ----NLANSGTYVLLSNIYAAIG 325
               +G     E I  Y + +     + N GT+V +   Y+ +G
Sbjct: 399 GYTQNG--LASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVG 440



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL----VL 94
           +++V  T ++  Y   G+++ +R  FD + +K++  WN +I  Y + G  +EA+     L
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           F       + P+  T   +L AC    +L  G+ +H  +      + +V V  +L+++YS
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACV---SLVDGKKVHCCVFK-MGFEDDVFVAASLVHLYS 167

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
           + G L  A  VF  +  KDV  WN+MI G+  +G    AL + N M    +K   IT   
Sbjct: 168 RYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVAS 227

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +L  CA +  V  G    +    ++ ++  V     ++N+ S+ G++++A ++V D    
Sbjct: 228 ILPVCAQSDDVING-VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA-QMVFDQMEV 285

Query: 275 PDSVLWGTLLGA 286
            D V W +++ A
Sbjct: 286 RDLVSWNSIIAA 297


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/435 (45%), Positives = 283/435 (65%), Gaps = 2/435 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           M+  YA+ G +  A+  FD    ++   WN MI GYAQ+G    AL LFR M  E    +
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT VA + AC  + AL +GR +HS I  +  +  +V++ TA++NMY+KCG+L DA +VF
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHS-IAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVF 119

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + +K+++ W++MI  +  +G    AL  F  M    L P  +TF  +LSAC+HAGL  
Sbjct: 120 SSIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFE 179

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G   F+ +  ++ I P ++H+ CMV+LL R+G++ EA +LV  M   PD V W TLL A
Sbjct: 180 HGFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAA 239

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H ++  G++ AE L+       G YVLLSNI+AA G+    A+VR LM+ +GV+K+P
Sbjct: 240 CRVHKSVERGKRAAEVLLELTSEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARGVRKKP 299

Query: 347 GCSSIELSNKVHEFLAGD-LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           G S+IE++++ HEF AG+  +HPK ++I   L+ ++  +K +GYVP T  VL  + E +K
Sbjct: 300 GWSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDEK 359

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           ++ L  HSEKLA+A GLIST PGT++++VKNLRVC DCH+  K ISK TGRKI++RD NR
Sbjct: 360 ESLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLNR 419

Query: 466 FHHFVNGTCSCGDYW 480
           FHH  NG CSCGDYW
Sbjct: 420 FHHTENGVCSCGDYW 434



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G +  A ++F  +  K+++ W+ MI  + Q+G  + AL  F  M  + + 
Sbjct: 100 TAIVNMYAKCGNLDDATIVFSSIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLF 159

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           P+ VT  ++LSAC   G  E G +    + +   I   +     ++++  + G L +A  
Sbjct: 160 PDAVTFKSILSACSHAGLFEHGFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEE 219

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGF---GKDALQLFNEM 200
           LV       D V WN+++    +H     GK A ++  E+
Sbjct: 220 LVQTMPFVPDDVTWNTLLAACRVHKSVERGKRAAEVLLEL 259


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/479 (42%), Positives = 288/479 (60%), Gaps = 33/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++ ++  D+ +STSLVD+YA+ G    A ++F  MP R+ VS                  
Sbjct: 231 LRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVS------------------ 272

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ +I   AQ+G A+EAL LFR M    + PN    V  L AC  +G
Sbjct: 273 -------------WSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLG 319

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+ G+ IH +I   R ++++  VGTA+I+MYSKCGSL  A+++FD+V  +D++ WN MI
Sbjct: 320 LLKLGKSIHGFI--LRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMI 377

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
                HG G+DAL LF EM R  ++P   TF  LLSA +H+GLV EG+ +FN M +EY I
Sbjct: 378 ACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGI 437

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EP  +H  C+V+LL+R+G VEEA  LV  +  +P   +   LL  C  +  + LGE  AE
Sbjct: 438 EPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAE 497

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            ++     + G   L+SN+YAA  NW  V  VR LMK+ G +K PGCSSIE+   +H F+
Sbjct: 498 KILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFV 557

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             D  HP+ ++I  M+ +++  ++  GY+P+T+ V HD+ E  K+  L  HSE+LA AFG
Sbjct: 558 MEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFG 617

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T PGT + ++KNLRVC DCH   K +SK   R+I++RD  RFHHF +G CSCGDYW
Sbjct: 618 LLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 128/247 (51%), Gaps = 4/247 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G +  A  +FD M ++D V W+ M+ G+   G   +A+ ++ RM  + +E
Sbjct: 142 SSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLE 201

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +EV  V V+ AC   G    G  +H Y+     ++++V + T+L++MY+K G    AR 
Sbjct: 202 ADEVVIVGVMQACAATGDARMGASVHGYLLR-HAMQMDVVISTSLVDMYAKNGLFDQARR 260

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ +  ++ V W+++I   A +G   +AL LF  M    L P+    +G L AC+  GL
Sbjct: 261 VFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGL 320

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G+     +     ++  V     ++++ S+ G +  A +++ D  +  D + W  ++
Sbjct: 321 LKLGKSIHGFILRTLELDRMVG--TAVIDMYSKCGSLSSA-QMLFDKVVSRDLISWNVMI 377

Query: 285 GACRLHG 291
             C  HG
Sbjct: 378 ACCGAHG 384



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 129/281 (45%), Gaps = 33/281 (11%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +S+ L   YAR GD+ +AE   AT P                                  
Sbjct: 38  LSSCLATAYARAGDLAAAESTLATAPT-----------------------------SPSS 68

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           +  WN ++  +++    +EAL +FR  L     P+  T    LSAC ++G L +G  +  
Sbjct: 69  IPAWNALLAAHSRGASPHEALRVFR-ALPPAARPDSTTFTLALSACARLGDLATGEVVTD 127

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
               +     ++ V ++++N+Y+KCG++ DA  VFDR+  +D V W++M+ G+   G   
Sbjct: 128 RASGA-GYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPV 186

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
            A++++  M R  L+  ++  +G++ ACA  G    G      +   +A++  V     +
Sbjct: 187 QAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLL-RHAMQMDVVISTSL 245

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           V++ ++ G  ++A + V ++    + V W  L+     +GN
Sbjct: 246 VDMYAKNGLFDQARR-VFELMPHRNDVSWSALISQLAQYGN 285


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 286/436 (65%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  + K   V AAR +FD +  K++V WN M+  Y+Q+    +A+ +FR M  E V+
Sbjct: 166 TSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQ 225

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ VT + ++ AC  + A   GR +H  I  S  I ++V +GTA+++ Y KCG L +AR 
Sbjct: 226 PDAVTFLTIIDACAALAAHTEGRMVHDDITAS-GIPMDVALGTAVMHFYGKCGRLDNARA 284

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +  K+ V W++++  YA +G+  +A++L++EM +  L+ + ITF+GLL AC+HAG 
Sbjct: 285 IFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGR 344

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             +G  +F +M  ++ + P  EHY  +++LL R+GQ++ +  L+  M  EPDS  W  LL
Sbjct: 345 SMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALL 404

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+HG++  G +IAE +   +  +SG Y+LLSN+Y++ G  D   R R  M+ +G+ K
Sbjct: 405 GACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITK 464

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           +PG SSIE+ ++VHEF+A    HP+   I+  +E +   +K  GYV   + VL D+ E++
Sbjct: 465 QPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEE 524

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSE+LA+AFGLIST PGT++ IVKNLRVC DCHA  K ISK  GRKI++RD  
Sbjct: 525 KEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAI 584

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG CSCGDYW
Sbjct: 585 RFHHFENGACSCGDYW 600



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 161/300 (53%), Gaps = 7/300 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEK--DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++  Y K G +A AR +FD ++EK  DV+ WN +I  Y Q+GL  EAL LF+ M  E V 
Sbjct: 65  LIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVI 124

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N+VT +  + AC  + + E GR +H+ I   + ++ +  VGT+L+NM+ KC ++  AR 
Sbjct: 125 ANQVTLINAIDACASLPSEEEGRIVHA-IAVDKRLESDTMVGTSLVNMFGKCKNVDAARA 183

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  K++V WN+M+  Y+ +   K A+Q+F  M    ++P  +TF+ ++ ACA    
Sbjct: 184 VFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAA 243

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             EGR   + +     I   V     +++   + G+++ A + + D   + ++V W  +L
Sbjct: 244 HTEGRMVHDDITAS-GIPMDVALGTAVMHFYGKCGRLDNA-RAIFDSLGKKNTVTWSAIL 301

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSG-TYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            A   +G      ++   ++   L  +G T++ LL     A  + DGV    +++++ GV
Sbjct: 302 AAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGV 361



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           T V +L  C    AL  G+ +HS +        +  +   LI MY KCG + +AR VFD+
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKD-GYASDRLIANLLIEMYGKCGGIAEARSVFDQ 84

Query: 169 VNDK--DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           + +K  DV+ WN +I  Y  +G GK+AL LF  M    +  + +T I  + ACA      
Sbjct: 85  IQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEE 144

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           EG R  + +  +  +E        +VN+  +   V+ A + V D     + V W  ++ 
Sbjct: 145 EG-RIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAA-RAVFDSLPRKNLVTWNNMVA 201


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 277/435 (63%), Gaps = 2/435 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y + G    AR  F+ +  KD+V W  MI     +GL  EAL LF  +    ++P+
Sbjct: 490 IVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPD 549

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +  ++ LSA   + +L+ G+ IH ++   +   +   + ++L++MY+ CG+++++R +F
Sbjct: 550 SIAIISALSATANLSSLKKGKEIHGFLIR-KGFFLEGPIASSLVDMYACCGTVENSRKMF 608

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             V  +D+++W SMI    MHG G +A+ LF +M    + P  ITF+ LL AC+H+GL+ 
Sbjct: 609 HSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMV 668

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+RFF  MK  Y +EP  EHY CMV+LLSR+  +EEAY+ V  M I+P S +W  LLGA
Sbjct: 669 EGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGA 728

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H N  LGE  A+ L+  +  NSG Y L+SNI+AA G W+ V  VR  MK  G++K P
Sbjct: 729 CHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNP 788

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL-KAEGYVPQTQIVLHDIGEKQK 405
           GCS IE+ NK+H F+A D  HP++ +IY+ L +    L K  GY+ QT+ V H++ E++K
Sbjct: 789 GCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEK 848

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
              L  HSE+LA+ +GL+ T  GTSI+I KNLR+C DCH  FK+ S+ + R +++RD NR
Sbjct: 849 TQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANR 908

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G CSCGD+W
Sbjct: 909 FHHFERGLCSCGDFW 923



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 153/331 (46%), Gaps = 36/331 (10%)

Query: 47  MLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++  Y K G++  ARVLFD   ME++D V WN +I  +   G   EAL LFRRM    V 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVA 245

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T VA L        ++ G  IH     S +   +V V  ALI MY+KCG ++DA  
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHF-ADVYVANALIAMYAKCGRMEDAER 304

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +  +D V WN+++ G   +   +DAL  F +M     KP  ++ + L++A   +G 
Sbjct: 305 VFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGN 364

Query: 225 VNEGR---------------RFFNTMKDEYAIEPKVEHYG----CM--------VNLLSR 257
           +  G+               +  NT+ D YA    V+H G    CM          +++ 
Sbjct: 365 LLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAG 424

Query: 258 AGQVE---EAYKLVMDMKI---EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
             Q E   EA  L   +++   + D ++ G++L AC    +     +I  Y+  ++LA+ 
Sbjct: 425 YAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADI 484

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                + N+Y  +G+ D   R    ++ K +
Sbjct: 485 MLQNAIVNVYGEVGHRDYARRAFESIRSKDI 515



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 153/296 (51%), Gaps = 14/296 (4%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEK 70
           +L+    R G++L+ +++ A   +  L S      T++  YAK   V      F+ M EK
Sbjct: 354 NLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEK 413

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D++ W  +I GYAQ+    EA+ LFR++  + ++ + +   +VL AC  + +    R IH
Sbjct: 414 DLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH 473

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            Y+   R++  ++ +  A++N+Y + G    AR  F+ +  KD+V W SMI     +G  
Sbjct: 474 GYVFK-RDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLP 531

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYG 249
            +AL+LF  + +  ++P  I  I  LSA A+   + +G+     + +  + +E  +    
Sbjct: 532 VEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA--S 589

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG----NIALGEKIAE 301
            +V++ +  G VE + K+   +K + D +LW +++ A  +HG     IAL +K+ +
Sbjct: 590 SLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGCGNEAIALFKKMTD 644



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 142/315 (45%), Gaps = 11/315 (3%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSL--TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           L+DL      +   ++L A + +  L +   T +L  Y K G +  A  +FD+M E+ + 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIF 111

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN M+  +   G   EA+ L++ M    V  +  T  +VL ACG +G    G  IH  +
Sbjct: 112 TWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG-V 170

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGK 191
                    V V  ALI MY KCG L  AR++FD +    +D V WNS+I  +   G   
Sbjct: 171 AVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCL 230

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGC 250
           +AL LF  M  + +  +  TF+  L        V  G       +K  +  +  V +   
Sbjct: 231 EALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVAN--A 288

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           ++ + ++ G++E+A ++   M +  D V W TLL    L  N    + +  +   QN A 
Sbjct: 289 LIAMYAKCGRMEDAERVFASM-LCRDYVSWNTLLSG--LVQNELYRDALNYFRDMQNSAQ 345

Query: 311 SGTYVLLSNIYAAIG 325
               V + N+ AA G
Sbjct: 346 KPDQVSVLNLIAASG 360



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 66/118 (55%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  YA  G V  +R +F  ++++D++ W  MI+    HG  NEA+ LF++M  E V 
Sbjct: 589 SSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVI 648

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           P+ +T +A+L AC   G +  G+     ++    ++   +    ++++ S+  SL++A
Sbjct: 649 PDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEA 706


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/439 (46%), Positives = 291/439 (66%), Gaps = 5/439 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA--EK 102
           TT++ CYAK G V+ A  +F  M E++VV W  MI  YA++    +A++LF+ M+A  E 
Sbjct: 224 TTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDED 283

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + PN VT V +L A   + AL  G+ +H+YI   R     V V  AL+ MY KCG L+  
Sbjct: 284 LVPNSVTIVCILHAFAGVNALGQGKLLHAYILR-RGFDSLVSVLNALMAMYMKCGCLEAG 342

Query: 163 RLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           R +FD + + KDVV WN++I GY MHGFG +A+Q+F +M ++ + P+ ITFI +L AC+H
Sbjct: 343 RHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSH 402

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV+EG+R F +M D Y + P+ EHY CMV+LL RAG ++EA +L+  M I P   +WG
Sbjct: 403 AGLVDEGKRLFESMVD-YNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWG 461

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLGACR+H ++   E     L      N+G YVLL++IYA       V  ++ L++E  
Sbjct: 462 SLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHA 521

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           ++K PGCS IE+  ++H F++ D ++P+ +E+  ++ E    +K +GYVP T  VL+DI 
Sbjct: 522 LEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIE 581

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           E++K+  L  HSEKLAVAFGLI+T  G  I+I KNLR+C DCH+V K ISK+  R+I++R
Sbjct: 582 EEEKEKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVR 641

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF +G CSCGDYW
Sbjct: 642 DVNRFHHFRDGICSCGDYW 660



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 145/344 (42%), Gaps = 47/344 (13%)

Query: 27  LSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
           L A+ +F + P  S    T ++  YA  GE+ AAR +FD+   K +  WN ++   A   
Sbjct: 104 LKADPVFRSDPFLS----TRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALAD 159

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSAC-----GQIGALESGRWIHSYIENSRNIKV 141
              EAL     M   +V  +  +    L AC       + A    R IH++    R   +
Sbjct: 160 HGEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVR-RGYGL 218

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +  V T LI+ Y+K G +  A  VF  + +++VV W +MI  YA +    DA+ LF EM 
Sbjct: 219 HTHVATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMV 278

Query: 202 RI--RLKPSDITFIGLLSACAHAGLVNEG--------RRFFNTMK--------------- 236
                L P+ +T + +L A A    + +G        RR F+++                
Sbjct: 279 ASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGC 338

Query: 237 --------DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLG 285
                   D       V  +  +++     G   EA ++  DM    + P+ + + ++LG
Sbjct: 339 LEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLG 398

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGT-YVLLSNIYAAIGNWD 328
           AC   G +  G+++ E ++  N+      Y  + ++    G+ D
Sbjct: 399 ACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLD 442



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%)

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H  ++     + +  + T LI+ Y+  G L  AR VFD    K + VWN+++   A+  
Sbjct: 100 VHRRLKADPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALAD 159

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            G++AL    +M R+R+     ++   L AC
Sbjct: 160 HGEEALARLADMGRLRVPVDSYSYAHGLKAC 190


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/484 (41%), Positives = 310/484 (64%), Gaps = 11/484 (2%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEV 57
           V   ++ D     +++   +  GD   A  L  T+ Q+ +       T +L  YAK G++
Sbjct: 252 VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDL 311

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSA 116
            +AR LF+ M  ++VV WN MI GYAQ+G +  A+ LF+ M+ A+K+ P+EVT V+V+SA
Sbjct: 312 DSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 371

Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
           CG +GALE G W+  ++  ++ IK+++    A+I MYS+CGS++DA+ VF  +  +DVV 
Sbjct: 372 CGHLGALELGNWVVRFLTENQ-IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 430

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           +N++I G+A HG G +A+ L + M    ++P  +TFIG+L+AC+HAGL+ EGR+ F ++K
Sbjct: 431 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 490

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           D     P ++HY CMV+LL R G++E+A + +  M +EP + ++G+LL A R+H  + LG
Sbjct: 491 D-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELG 545

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           E  A  L      NSG ++LLSNIYA+ G W  V R+R  MK+ GV+K  G S +E   K
Sbjct: 546 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 605

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           +H+F+  D  H +S +IY +L E+   ++  GY+     VL D+ E++K+  +  HSEKL
Sbjct: 606 LHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKL 665

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+ + L+ ++ G  I++VKNLRVC DCH   K+ISK  GR I++RD NRFH F +G CSC
Sbjct: 666 AICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSC 725

Query: 477 GDYW 480
            DYW
Sbjct: 726 KDYW 729



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 172/332 (51%), Gaps = 51/332 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEK------------------------------ 31
           +K     D +V  +++D+YAR G +  A K                              
Sbjct: 122 LKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQ 181

Query: 32  ---LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
              LF  MP+R++++ T M+T YAK  ++ AAR  FD M E+ VV WN M+ GYAQ+GLA
Sbjct: 182 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLA 241

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----ALESGRWIHSYIENSRNIKVNVQ 144
            EAL LF  M+   +EP+E T V V+SAC   G    A    R +H      + I++N  
Sbjct: 242 EEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLH-----QKRIQLNCF 296

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI- 203
           V TAL++MY+K G L  AR +F+ +  ++VV WNSMI GYA +G    A++LF EM    
Sbjct: 297 VRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAK 356

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGR---RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
           +L P ++T + ++SAC H G +  G    RF      E  I+  +  +  M+ + SR G 
Sbjct: 357 KLTPDEVTMVSVISACGHLGALELGNWVVRFLT----ENQIKLSISGHNAMIFMYSRCGS 412

Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +E+A ++  +M    D V + TL+     HG+
Sbjct: 413 MEDAKRVFQEMATR-DVVSYNTLISGFAAHGH 443


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/440 (44%), Positives = 281/440 (63%), Gaps = 2/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V  T+++  YAK G    AR +F  M  ++ V WN +I G+AQ+G A+EAL LFR M  
Sbjct: 247 VVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMST 306

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P+    V+ L AC  +G L+ G+ IH +I   R ++    +GTA+++MYSKCGSL+
Sbjct: 307 SGLQPDSGALVSALLACADVGFLKLGKSIHGFI--LRRLEFQCILGTAVLDMYSKCGSLE 364

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR +F++++ +D+V+WN+MI     HG G DAL LF E+    +KP   TF  LLSA +
Sbjct: 365 SARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 424

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F+ M  E+ IEP  +H  C+V+LL+R+G VEEA +++  M  EP   +W
Sbjct: 425 HSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIW 484

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LL  C  +  + LGE IA+ ++     + G   L+SN+YAA   WD V  +R LMK+ 
Sbjct: 485 VALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDS 544

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PG S IE+    H F+  D  HP+ +EI  M+ +++  ++  GYVP+T+ V HD+
Sbjct: 545 GSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDL 604

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E  K+  L  HSE+LA+AFGL++T PGT + I+KNLRVC DCH   K ISK   R+I++
Sbjct: 605 DEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVV 664

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSCGDYW
Sbjct: 665 RDAKRFHHFKDGACSCGDYW 684



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 8/275 (2%)

Query: 21  ARGGDVLSAE----KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR GD+ +AE    + FA    R +   + +L  Y++ G +  A  +FD M  KD V W+
Sbjct: 122 ARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWS 181

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
            M+ G+   G   EAL ++ RM    V  +EV  V V+ AC   G    G  +H      
Sbjct: 182 TMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLR- 240

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             ++++V + T+L++MY+K G    AR VF  +  ++ V WN++I G+A +G   +AL L
Sbjct: 241 HGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDL 300

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F EM    L+P     +  L ACA  G +  G+     +     +E +      ++++ S
Sbjct: 301 FREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR--LEFQCILGTAVLDMYS 358

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + G +E A KL   +    D VLW  ++  C  HG
Sbjct: 359 KCGSLESARKLFNKLSSR-DLVLWNAMIACCGTHG 392


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/473 (42%), Positives = 300/473 (63%), Gaps = 2/473 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ V T+++ +Y + G +  A   F  +  ++ V+   M+T Y   G    A  LF +M 
Sbjct: 199 NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMH 258

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGR 127
           + D VCWN MI  YAQHG   +AL L+R M     + P + T V V+  C ++ AL+ GR
Sbjct: 259 DADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGR 318

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            IH+ +  + N   N+ V  AL++MY KCG L +A  VF  +  KD + WN++I  YA H
Sbjct: 319 AIHARVRAT-NFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYH 377

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G    AL L+ EM    +KP+++TF+GLLSAC+H GLV +G  +F  M+D++ I+P V H
Sbjct: 378 GHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPH 437

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           +GC+++LL R G++ EA  ++  M I+ ++V W +LLGAC+ HG++  G + A+ ++ + 
Sbjct: 438 FGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRV 497

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
              SG YVLLSNIYAA G W  V ++R +M  +GV+K PG S IE+ + VHEF++GD  H
Sbjct: 498 PWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSH 557

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+ +EIY+ L ++   +K  GYVP T  V HD+ E++K++ L  HSEKLA+ +G +    
Sbjct: 558 PQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPG 617

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            + ++IVKNLRVC DCH   K +S+ TGRKI++RD  RFH F NG+CSC DYW
Sbjct: 618 KSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 131/280 (46%), Gaps = 37/280 (13%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K G +  AR LF+ M  ++V  W V +  ++ +G  +EALV FRRM      P+
Sbjct: 103 LIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPD 162

Query: 107 EVTAVAVL--SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            VT   +L   A     A++ GR IH Y   S  +  NV VGTA+I+MY KCG L DAR 
Sbjct: 163 RVTFSVILAAIAQMGAAAIDQGREIHRYARIS-GLLPNVVVGTAVISMYGKCGRLDDARA 221

Query: 165 VFDRV-------------------------------NDKDVVVWNSMIVGYAMHGFGKDA 193
            F+ +                               +D D V WN+MI  YA HG GK A
Sbjct: 222 AFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQA 281

Query: 194 LQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           L L+  M     L P   TF+ ++  CA    + +GR     ++     +  +     +V
Sbjct: 282 LDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVR-ATNFDANLLVSNALV 340

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           ++  + G ++EA  +   MK++ D + W T++ +   HG+
Sbjct: 341 HMYGKCGCLDEALDVFHSMKLK-DEISWNTIISSYAYHGH 379



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 94/195 (48%), Gaps = 5/195 (2%)

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTALINMYSKCGS 158
           + ++E + V   A++  CG   A+ + R +HS+I +  +       +   LI MY KCG 
Sbjct: 53  SRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGR 112

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL-- 216
           L  AR +F+ +  ++V  W   +  ++ +G   +AL  F  M +   +P  +TF  +L  
Sbjct: 113 LPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAA 172

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            A   A  +++GR      +    + P V     ++++  + G++++A     +++ + +
Sbjct: 173 IAQMGAAAIDQGREIHRYARIS-GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK-N 230

Query: 277 SVLWGTLLGACRLHG 291
           SV W  ++   +L G
Sbjct: 231 SVTWNAMMTNYKLDG 245


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/439 (43%), Positives = 275/439 (62%), Gaps = 1/439 (0%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V  + +   YAK G +  AR +FD M  +DVV W  M+D Y   G   E   LF RM+  
Sbjct: 198 VVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRS 257

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            + PNE T   VL AC +  + + G+ +H  +  SR    +   G+AL++MYSK G +  
Sbjct: 258 GILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGD-SCFAGSALVHMYSKYGDMGT 316

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VF  +   D+V W +MI GYA +G   +AL  F+ +     +P  +TF+G+LSACAH
Sbjct: 317 AMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAH 376

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV++G   F+++KD+Y IE   +HY C+++LLSR+G  E A  ++  M ++P+  LW 
Sbjct: 377 AGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWA 436

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
           +LLG CR+H N+ L    AE L      N  TYV L+NIYA++G +D V  +R  M+ +G
Sbjct: 437 SLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRG 496

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           + K P  S IE+  +VH FL GD  HP+++EIY +L+++   ++ EGYV  T  VLHD+ 
Sbjct: 497 ITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVE 556

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
           ++QKQ  +  HSE+LAVAFG+I+T  G+ IK+ KNLR+C DCH   KLISK   R+I++R
Sbjct: 557 DEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDCHTTIKLISKIVQREIIVR 616

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFHHF NG+CSC DYW
Sbjct: 617 DSNRFHHFKNGSCSCRDYW 635



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 129/260 (49%), Gaps = 7/260 (2%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGE-VAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
           A  L +++P   + S  T++    +    +A+AR LFD M  +D   W+ ++  + +HG 
Sbjct: 80  ALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHGQ 139

Query: 88  ANEALVLFRRMLAEKV---EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
              AL ++RRML E       NE TA + L+A        +GR +H ++   R I  +  
Sbjct: 140 PRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVR-RGIDADAV 198

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V +AL +MY+K G L DAR VFDR+  +DVV W +M+  Y   G   +  +LF  M R  
Sbjct: 199 VWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSG 258

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           + P++ T+ G+L ACA       G++    M      +        +V++ S+ G +  A
Sbjct: 259 ILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAG-SALVHMYSKYGDMGTA 317

Query: 265 YKLVMDMKIEPDSVLWGTLL 284
            ++   M  +PD V W  ++
Sbjct: 318 MRVFRGMP-KPDLVSWTAMI 336



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 41/231 (17%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +  ++LV +Y++ GD+ +A ++F  MP+  LVS T M++ Y                   
Sbjct: 299 FAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGY------------------- 339

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                       AQ+G  +EAL  F  +L+    P+ VT V VLSAC   G ++ G  I 
Sbjct: 340 ------------AQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIF 387

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV----VVWNSMIVGYAM 186
             I++   I+        +I++ S+ G  + A    D +N   V     +W S++ G  +
Sbjct: 388 HSIKDKYGIEHTADHYACVIDLLSRSGLFERAE---DMINTMPVKPNKFLWASLLGGCRI 444

Query: 187 HGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMK 236
           H   +  L  +       ++P +  T++ L +  A  GL +E      TM+
Sbjct: 445 HKNVR--LAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTME 493


>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
          Length = 312

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/312 (58%), Positives = 239/312 (76%)

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           +++K+VV WN+MIVGY MHG G+DAL LF +M +  +KP++ITFI +LSAC+HAGLV+EG
Sbjct: 1   MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEG 60

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACR 288
            + +N M  +YAI P VEHY CMV+LL RAG + EA+  +  M IEP + +WG  LG+CR
Sbjct: 61  WKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCR 120

Query: 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGC 348
           +H NI LGE++AE L++ +  N+G YVLLSNIYAA G WD VA+VR +MKEK V+K PGC
Sbjct: 121 IHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGC 180

Query: 349 SSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNS 408
           S IE++NK+H F+ GD+ HP+++ IY MLE +   ++A GYVP T  VLHD+ E+ K+N 
Sbjct: 181 SLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENM 240

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           L  HSEKLA+AFGLIST+ GTSI+I KNLRVC DCH+  K ISK   R+I+MRD NRFHH
Sbjct: 241 LFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHH 300

Query: 469 FVNGTCSCGDYW 480
           F +G CSCGDYW
Sbjct: 301 FKDGLCSCGDYW 312



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  K+VV WN MI GY  HG   +ALVLF +M    V+PNE+T ++VLSAC   G ++ G
Sbjct: 1   MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEG 60

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYA 185
              ++ +     I   V+    ++++  + G L +A    +++  +    VW + +    
Sbjct: 61  WKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCR 120

Query: 186 MH---GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +H     G+   +L      + L P +  +  LLS
Sbjct: 121 IHCNIELGERVAELL-----LNLDPDNAGYYVLLS 150


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/530 (39%), Positives = 315/530 (59%), Gaps = 53/530 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K + ++ +  S +L+D+Y++ GD+  A ++F  M +R++VS T+M+  Y + G    A 
Sbjct: 278 IKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 62  VLFDDMEE--------------------------KDV--------------VCWNVMIDG 81
            L   ME+                          KDV              VC N ++D 
Sbjct: 338 RLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVC-NALMDM 396

Query: 82  YAQHGLANEALVLFRRMLAEKV----------EPNEVTAVAVLSACGQIGALESGRWIHS 131
           Y + G  + A  +F  M+ + +          +P+  T   +L AC  + ALE G+ IH 
Sbjct: 397 YTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHG 456

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI  +     +  V  AL+++Y KCG L  ARL+FD +  KD+V W  MI GY MHG+G 
Sbjct: 457 YILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGN 515

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+  FNEM    ++P +++FI +L AC+H+GL+ +G RFF  MK+++ IEPK+EHY CM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LLSR G + +AY+ +  + I PD+ +WG LL  CR++ +I L EK+AE +      N+
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLRHPKS 370
           G YVLL+NIYA    W+ V R+R  + +KG++K PGCS IE+  KV+ F++G +  HP S
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHS 695

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
           K+I  +L+++   +K EGY P+T+  L +  E QK+ +L  HSEKLA+AFGL++  P  +
Sbjct: 696 KKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKT 755

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +++ KNLRVC DCH + K +SK T R+I++RD NRFHHF NG CSC  +W
Sbjct: 756 VRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 149/297 (50%), Gaps = 23/297 (7%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA---------- 58
           D  +   LV LYA  GD+    ++F TM ++++     M++ YAK G+            
Sbjct: 133 DEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMV 192

Query: 59  ----------AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV 108
                     +A  LFD + ++DV+ WN MI GY  +GL    L ++++M+   ++ +  
Sbjct: 193 EKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLA 252

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168
           T ++VL  C   G L  G+ +HS    S   +  +     L++MYSKCG L  A  VF++
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKS-TFERRINFSNTLLDMYSKCGDLDGALRVFEK 311

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
           + +++VV W SMI GY   G    A++L  +M +  +K   +    +L ACA +G ++ G
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNG 371

Query: 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +   + +K    +E  +     ++++ ++ G ++ A  +   M ++ D + W T++G
Sbjct: 372 KDVHDYIKAN-NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVK-DIISWNTMIG 426



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 150/360 (41%), Gaps = 90/360 (25%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           ++ V  +N  I  + Q G    A+ L    + +K E    T  +VL  C    +L  G+ 
Sbjct: 63  DRQVTDYNAKILHFCQLGNLENAMELV--CMCQKSELETKTYSSVLQLCAGSKSLTDGKK 120

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV----------------------- 165
           +HS I+ S N+ V+  +G  L+++Y+ CG LK+ R V                       
Sbjct: 121 VHSIIK-SNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 166 ----------------------------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
                                       FD++ D+DV+ WNSMI GY  +G  +  L+++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIY 239

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYAI- 241
            +M  + +     T I +L  CA++G ++ G+                F NT+ D Y+  
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKC 299

Query: 242 --------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLL 284
                         E  V  +  M+   +R G+ + A +L+  M+   ++ D V   ++L
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSIL 359

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC   G++  G+ + +Y+ + N+  S  +V   L ++Y   G+ DG   V + M  K +
Sbjct: 360 HACARSGSLDNGKDVHDYIKANNM-ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDI 418


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/436 (42%), Positives = 276/436 (63%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y + G +  AR  F+ +  KD+V W  MI     +GL  EAL LF  +    ++P
Sbjct: 489 AIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQP 548

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + +  ++ LSA   + +L+ G+ IH ++   +   +   + ++L++MY+ CG+++++R +
Sbjct: 549 DSIAIISALSATANLSSLKKGKEIHGFLIR-KGFFLEGPIASSLVDMYACCGTVENSRKM 607

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  V  +D+++W SMI    MHG G  A+ LF +M    + P  ITF+ LL AC+H+GL+
Sbjct: 608 FHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLM 667

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG+RFF  MK  Y +EP  EHY CMV+LLSR+  +EEAY  V +M I+P S +W  LLG
Sbjct: 668 VEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLG 727

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC +H N  LGE  A+ L+  +  NSG Y L+SNI+AA G W+ V  VR  MK  G++K 
Sbjct: 728 ACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKN 787

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL-KAEGYVPQTQIVLHDIGEKQ 404
           PGCS IE+ NK+H F+A D  HP++ +IY+ L +    L K  GY+ QT+ V H++ E++
Sbjct: 788 PGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEE 847

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSE+LA+ +GL+ T  GT I+I KNLR+C DCH  FK+ S+ + R +++RD N
Sbjct: 848 KTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDAN 907

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSCGD+W
Sbjct: 908 RFHHFERGLCSCGDFW 923



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 36/332 (10%)

Query: 46  TMLTCYAKQGEVAAARVLFDD--MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
            ++  Y K G++  ARVLFD   ME++D V WN +I  +   G   EAL LFRRM    V
Sbjct: 185 ALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGV 244

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             N  T VA L        ++ G  IH  +  S +   +V V  ALI MY+KCG ++DA 
Sbjct: 245 ASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHF-ADVYVANALIAMYAKCGRMEDAG 303

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+ +  +D V WN+++ G   +    DAL  F +M     KP  ++ + L++A   +G
Sbjct: 304 RVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSG 363

Query: 224 LVNEGR---------------RFFNTMKDEYAIEPKVEHYG----CM--------VNLLS 256
            + +G+               +  NT+ D YA    V++ G    CM          +++
Sbjct: 364 NLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIA 423

Query: 257 RAGQVE---EAYKLVMDMKI---EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
              Q E   EA  L   +++   + D ++ G++L AC    +     +I  Y+  ++LA+
Sbjct: 424 GYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD 483

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
                 + N+Y  +G+ D   R    ++ K +
Sbjct: 484 IMLQNAIVNVYGEVGHIDYARRAFESIRSKDI 515



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 153/296 (51%), Gaps = 14/296 (4%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEK 70
           +L+    R G++L  +++ A   +  L S      T++  YAK   V      F+ M EK
Sbjct: 354 NLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEK 413

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D++ W  +I GYAQ+    EA+ LFR++  + ++ + +   +VL AC  + +    R IH
Sbjct: 414 DLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH 473

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            Y+   R++  ++ +  A++N+Y + G +  AR  F+ +  KD+V W SMI     +G  
Sbjct: 474 GYVFK-RDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLP 531

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYG 249
            +AL+LF  + +  ++P  I  I  LSA A+   + +G+     + +  + +E  +    
Sbjct: 532 VEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA--S 589

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG----NIALGEKIAE 301
            +V++ +  G VE + K+   +K + D +LW +++ A  +HG     IAL +K+ +
Sbjct: 590 SLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGCGNKAIALFKKMTD 644



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 146/333 (43%), Gaps = 17/333 (5%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSL--TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           L+DL      +   ++L A + +  L +   T ++  Y K G +  A  +FD+M E+ + 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIF 111

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            WN ++  +   G   EA+ L++ M    V  +  T  +VL ACG +G    G  IH  +
Sbjct: 112 SWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG-V 170

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGK 191
                    V V  ALI MY KCG L  AR++FD +    +D V WNS+I  +   G   
Sbjct: 171 AVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCL 230

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT-MKDEYAIEPKVEHYGC 250
           +AL LF  M  + +  +  TF+  L        V  G       +K  +  +  V +   
Sbjct: 231 EALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVAN--A 288

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           ++ + ++ G++E+A ++   M    D V W TLL    L  N    + +  +   QN   
Sbjct: 289 LIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLLSG--LVQNELYSDALNYFRDMQNSGQ 345

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
               V + N+ AA G      R   L+K K V 
Sbjct: 346 KPDQVSVLNLIAASG------RSGNLLKGKEVH 372



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 66/118 (55%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  YA  G V  +R +F  ++++D++ W  MI+    HG  N+A+ LF++M  + V 
Sbjct: 589 SSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVI 648

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           P+ +T +A+L AC   G +  G+     ++    ++   +    ++++ S+  SL++A
Sbjct: 649 PDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEA 706


>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
 gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
          Length = 352

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/352 (51%), Positives = 254/352 (72%), Gaps = 1/352 (0%)

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H ++E++R I++++++GTALI+MY+KCG ++ A+ VFDR+ +KDV  W+SMI+G A HG
Sbjct: 2   VHRFVESNR-IELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG 60

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            G ++L LF++M    +KP+ +TF+G+L AC H GLV+EG+++F +M + + IEP VEHY
Sbjct: 61  LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHY 120

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GCMV+LL R+G VEEA +L+  M  EPD+++W  LLGACR+H N+ + E+    L   + 
Sbjct: 121 GCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDP 180

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
              G YVLLSNIYA   +W+GVA +R  ++   +Q+ PG SSIE   K+HEF++GD  HP
Sbjct: 181 LGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHP 240

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
           +SKEIY +LEE+   LK  GY P T +VL DI E+ K+ SL  HSEKLA+AF L++T   
Sbjct: 241 RSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPAR 300

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++I+I KNLR C DCH+  KLIS    RK+++RDRNRFHHF  G CSC DYW
Sbjct: 301 STIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 84/144 (58%), Gaps = 1/144 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK G++ +A+ +FD M EKDV  W+ MI G A HGL +E+L LF +M++E ++
Sbjct: 19  TALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMK 78

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR- 163
           PN VT V VL AC  +G +  G+     +     I+  V+    ++++  + G +++AR 
Sbjct: 79  PNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQ 138

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMH 187
           L+     + D ++W +++    +H
Sbjct: 139 LIRSMTFEPDTIIWRALLGACRIH 162


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/483 (40%), Positives = 289/483 (59%), Gaps = 34/483 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   +K+ +V + L+D+YA+ G  +S                               +R
Sbjct: 268 IKTGFNKNRHVGSGLIDMYAKCGAGMSE------------------------------SR 297

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHG-LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            +F+++   D+V WN MI GY+Q+  L+ EAL  FR+M      P++ + V  +SAC  +
Sbjct: 298 KVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNL 357

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            +   G+  H+    S      + V  AL+ MYSKCG+L+DAR +F R+   + V  NS+
Sbjct: 358 SSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSI 417

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GYA HG G ++L LF +M    + P+ IT + +LSACAH G V EG+++FN MKD + 
Sbjct: 418 IAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFG 477

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           IEP+ EHY CM++LL RAG++ EA +L+  M   P S  W  LLGACR +GN+ L EK A
Sbjct: 478 IEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAA 537

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
              +     N+  Y++L+++Y+A   W+  AR+R LM+++G++K+PGCS IEL+ +VH F
Sbjct: 538 NQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVF 597

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL---HDIGEKQKQNSLEVHSEKLA 417
           +A D  HP+ KEI+M L+E+   +K  GYVP  +       + GE++K+  L  HSEKLA
Sbjct: 598 VAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLA 657

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFGL+ T+ G  + +VKNLR+C DCH   K +S    RKI +RD  RFH F +G CSCG
Sbjct: 658 VAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCG 717

Query: 478 DYW 480
           DYW
Sbjct: 718 DYW 720



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 12/279 (4%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+S   + LY++   + +A   F    + ++ S   ++  YAK+  +  A  LFD + + 
Sbjct: 44  YLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQP 103

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA-CGQIGALESGRWI 129
           D+V +N +I+ YA  G    AL LF  M    +  +  T   V++A C  +G +   R +
Sbjct: 104 DLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLI---RQL 160

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMH 187
           HS +  S      V V  +L+  YSK G L++A +VF+ + +  +D V WNSMIV Y  H
Sbjct: 161 HS-LAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQH 219

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVE 246
             G  AL L+ +M     +    T   +L+  +    ++ G +F    +K  +    K  
Sbjct: 220 KRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFN---KNR 276

Query: 247 HYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           H G  ++++ ++ G      + V +     D V+W T++
Sbjct: 277 HVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMI 315


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 293/480 (61%), Gaps = 35/480 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K   D D+YV   L+  Y   G +  A K+F  MP                         
Sbjct: 112 KLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMP------------------------- 146

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIG 121
                 E+D+V W+ MI  +A++G   EAL LF+RM L   V+P+EV  ++V+SA   +G
Sbjct: 147 ------ERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILG 200

Query: 122 ALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            LE G+WI  +I  SRN ++  V +GTAL++M+S+CG ++++  VFD + +++V+ W ++
Sbjct: 201 DLELGKWIRGFI--SRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTAL 258

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A+HG   +AL++F EM     +P  +TF G+L AC+H GLV+EG   F ++++EY 
Sbjct: 259 INGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYG 318

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP  EHYGCMV+LL RAG + EA K V  M I P+S++W TLLGAC  H  I L EK+ 
Sbjct: 319 MEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVK 378

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E +   +  + G YVLLSN+Y  +G W   A VR  M+EK + K+PGCS I +++ +HEF
Sbjct: 379 EKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEF 438

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AGD  HP+ + I   L  +   LK  GY P    VL DI E++K+++L  HSEKLAVAF
Sbjct: 439 VAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAF 498

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+  +   +I+++KNLR+C DCH   K  S    R+I++RDRNRFHHF  G+CSC DYW
Sbjct: 499 ALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 18/311 (5%)

Query: 47  MLTCYAK-QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +L+C A     ++ AR +FD +   D   +N +I  +A    +    +  +  +A  V P
Sbjct: 27  LLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSKMAMA-GVSP 85

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T   VL AC +   L++G  +HS +        +V V   LI+ Y  CG L  A  V
Sbjct: 86  DHFTFPFVLKACAR---LQTGLDLHSLL-FKLGFDSDVYVQNGLIHFYGCCGFLDFALKV 141

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGL 224
           F+ + ++D+V W+SMI  +A +GFG +AL LF  M  +  +KP ++  + ++SA +  G 
Sbjct: 142 FEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGD 201

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G ++         +E  V     +V++ SR G +EE+ + V D   E + + W  L+
Sbjct: 202 LELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMR-VFDEMGERNVLTWTALI 259

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW----DGVARVRTLMKEK 340
               +HG  A  E +  +   +N      +V  + +  A  +     +G     ++  E 
Sbjct: 260 NGLAVHGRSA--EALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEY 317

Query: 341 GVQKEP---GC 348
           G++  P   GC
Sbjct: 318 GMEPLPEHYGC 328


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/475 (40%), Positives = 291/475 (61%), Gaps = 32/475 (6%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            D D++V +SL+D+YA       + K+F  +P R                          
Sbjct: 201 FDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-------------------------- 234

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                D + WN ++ G AQ+G   EAL +FRRML   V P  VT  +++  CG + +L  
Sbjct: 235 -----DHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRF 289

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
           G+ +H+Y+      + NV + ++LI+MY KCG +  A  +FD+++  DVV W +MI+GYA
Sbjct: 290 GKQLHAYVICG-GFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYA 348

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245
           +HG  ++AL LF  M     KP+ ITF+ +L+AC+HAGLV++G ++F +M + Y I P +
Sbjct: 349 LHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTL 408

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
           EH+  + + L RAG+++EAY  +  M+I+P + +W TLL ACR+H N  L E++A+ ++ 
Sbjct: 409 EHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME 468

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
               + G++V+LSN+Y+A G W+  A +R  M++KG++K+P CS IE+ +K+H F+A D 
Sbjct: 469 LEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDR 528

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP    I   L   +  +  EG+VP T+ V  DI E+ K   L  HSEKLA+ FG+IST
Sbjct: 529 SHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIIST 588

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             GT I+++KNLRVC DCH V K ISK   R+I++RD NRFHHF +G CSCGD+W
Sbjct: 589 PAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 119/237 (50%), Gaps = 11/237 (4%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           + R +FD+M E+DVV WN ++ G A+ G  +EAL   R+M  E   P+  T   VL    
Sbjct: 122 SVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFA 181

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           +   ++ G  +H +   +     +V VG++LI+MY+ C     +  VFD +  +D ++WN
Sbjct: 182 ECADVKRGLEVHGFAFRN-GFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWN 240

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           S++ G A +G  ++AL +F  M +  ++P  +TF  L+  C +   +  G++        
Sbjct: 241 SLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQL-----HA 295

Query: 239 YAI----EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           Y I    E  V     ++++  + G++  A+  + D    PD V W  ++    LHG
Sbjct: 296 YVICGGFEDNVFISSSLIDMYCKCGEISIAH-CIFDKMSSPDVVSWTAMIMGYALHG 351



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 34/249 (13%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA--VAVLSACGQIG----------- 121
           W   I   A  G   +A+ LF RM A     + V A   A L +C  +G           
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 122 ALESGRWIHSYIENSR-NIKVNV------QVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
           A+ SG +   +  N+  N+   V        G A++++     + +  R VFD + ++DV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF---IGLLSACAHA--GLVNEGR 229
           V WN++++G A  G   +AL    +MCR   +P   T    + + + CA    GL   G 
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
            F N    +  +         ++++ +   + + + K+  ++ +  D +LW +LL  C  
Sbjct: 196 AFRNGFDSDVFVGSS------LIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQ 248

Query: 290 HGNI--ALG 296
           +G++  ALG
Sbjct: 249 NGSVEEALG 257


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/450 (42%), Positives = 286/450 (63%), Gaps = 1/450 (0%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++F T  +      + ++  Y K G +  AR +F+ ++ K+VV W  ++  Y+Q+G   E
Sbjct: 255 RMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEE 314

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL  F  M  + + PNE T   +L++C  I AL  G+ +H+ I+ S   + ++ VG ALI
Sbjct: 315 ALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKS-GFEDHIIVGNALI 373

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           NMYSK GS++ A  VF  +  +D + W++MI G + HG G++AL +F EM   +  P  +
Sbjct: 374 NMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYV 433

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           TF+G+LSACAH G V EG  + N +  +  IEP VEHY C+V LL +AG+++EA   +  
Sbjct: 434 TFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKS 493

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
             ++ D V W TLL AC +H N  LG+K+AE ++  +  + GTY+LLSN+YA    WDGV
Sbjct: 494 TPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGV 553

Query: 331 ARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390
            ++R LM+E+ V+KEPG S IE+ N +H F++    HP+S +IY  ++E+   ++  GYV
Sbjct: 554 VKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYV 613

Query: 391 PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLI 450
           P    V HD+ ++QK+  +  HSEKLA+A+GL+ T  G  I+++KNLR+C DCH+  KLI
Sbjct: 614 PDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLI 673

Query: 451 SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           SK T R I++RD NRFH F +G CSC DYW
Sbjct: 674 SKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 166/342 (48%), Gaps = 44/342 (12%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           YV  +L+ +Y+R  DV  A  ++  +P                                 
Sbjct: 165 YVKNALICMYSRRSDVKGAMSVWYEVPGL------------------------------- 193

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           DV  +N++I+G  ++G  +EAL +  RM+ E +  + VT V     C  +  L  G  +H
Sbjct: 194 DVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVH 253

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             +  +   + +  V +A+I+MY KCG++ +AR VF+R+  K+VV W +++  Y+ +G  
Sbjct: 254 CRMFRT-GAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCF 312

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           ++AL  F EM    L P++ TF  LL++CA    +  G+     +K     E  +     
Sbjct: 313 EEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKS-GFEDHIIVGNA 371

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK----IAEYLISQ 306
           ++N+ S++G +E A+K+ ++M I  DS+ W  ++     HG   LG +      E L ++
Sbjct: 372 LINMYSKSGSIEAAHKVFLEM-ICRDSITWSAMICGLSHHG---LGREALVVFQEMLAAK 427

Query: 307 NLANSGTYVLLSNIYAAIGN-WDGVARVRTLMKEKGVQKEPG 347
              +  T+V + +  A +G+  +G   +  LMK+ G+  EPG
Sbjct: 428 ECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGI--EPG 467



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 17/312 (5%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++V + +++  YAK  ++  AR+LFD M +++VV W  ++ GY  +GL  E L LF+ M+
Sbjct: 61  NIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMI 120

Query: 100 A-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           + + + PNE     ++S+C   G +  G   H Y   S  +  +  V  ALI MYS+   
Sbjct: 121 SVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKS-GLVFHQYVKNALICMYSRRSD 179

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           +K A  V+  V   DV  +N +I G   +G+  +AL++ + M    +   ++T++     
Sbjct: 180 VKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGL 239

Query: 219 CAHAGLVNEGR----RFFNTMK--DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           C+H   +  G     R F T    D +     ++ YG       + G +  A K+   ++
Sbjct: 240 CSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYG-------KCGNILNARKVFNRLQ 292

Query: 273 IEPDSVLWGTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331
            + + V W  +L A   +G          E  +   L N  T+ +L N  A I       
Sbjct: 293 TK-NVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGK 351

Query: 332 RVRTLMKEKGVQ 343
            + T +K+ G +
Sbjct: 352 LLHTRIKKSGFE 363



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 3/127 (2%)

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            P E T + +L        L+ G+ IH++ I  ++  K N+    +LIN+Y+KC  +  A
Sbjct: 23  HPLEHT-IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVA 81

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAH 221
           R++FD +  ++VV W +++ GY  +G   + L+LF  M  +  ++P++  F  ++S+C+ 
Sbjct: 82  RILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSD 141

Query: 222 AGLVNEG 228
           +G V EG
Sbjct: 142 SGQVVEG 148


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/483 (40%), Positives = 297/483 (61%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  +  +++VS++LV++YA    +  A+ +F +M +R  VS   ++T Y    E     
Sbjct: 206 VRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGL 265

Query: 62  VLFDDMEEKDV----VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            +F  M  + V      WN +I G  Q+G   +AL +  RM     +PN++T  +VL AC
Sbjct: 266 SVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPAC 325

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + +L  G+ IH YI      + ++   TAL+ MY+KCG L+ +R VF  +  +D V W
Sbjct: 326 TNLESLRGGKQIHGYIFRHWFFQ-DLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSW 384

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI+  +MHG G++AL LF EM    ++P+ +TF G+LS C+H+ LV+EG   F++M  
Sbjct: 385 NTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSR 444

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           ++++EP  +H+ CMV++LSRAG++EEAY+ +  M IEP +  WG LLG CR++ N+ LG 
Sbjct: 445 DHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGR 504

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L      N G YVLLSNI  +   W   +  R LM+++GV K PGCS I++ N+V
Sbjct: 505 IAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRV 564

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H F+ GD  + +S EIY  L+ +   ++  GY+P T  VL D+ +++K+  L  HSEKLA
Sbjct: 565 HTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLA 624

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFG+++    +SI++ KNLR+C DCH   K ++K  G KI++RD  RFHHF +G CSC 
Sbjct: 625 VAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQ 684

Query: 478 DYW 480
           D+W
Sbjct: 685 DFW 687



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 155/346 (44%), Gaps = 74/346 (21%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++F    D+ +  +L+D+Y +                           C   +G    AR
Sbjct: 105 IRFGFCSDVLLGNALIDMYGK---------------------------CRCSEG----AR 133

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++F+ M  +DV+ W  M   Y   GL  EAL  FR+M      PN VT  ++L AC  + 
Sbjct: 134 LVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLK 193

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+SGR +H ++  +  +  NV V +AL+NMY+ C S++ A+LVFD ++ +D V WN +I
Sbjct: 194 DLKSGREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLI 252

Query: 182 VGYAMHG--------FGK---------------------------DALQLFNEMCRIRLK 206
             Y ++         FG+                            AL++ + M     K
Sbjct: 253 TAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFK 312

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
           P+ IT   +L AC +   +  G++    +   +  +  +     +V + ++ G +E + +
Sbjct: 313 PNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ-DLTTTTALVFMYAKCGDLELSRR 371

Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            V  M  + D+V W T++ A  +HGN   GE+    L+ + + +SG
Sbjct: 372 -VFSMMTKRDTVSWNTMIIATSMHGN---GEE--ALLLFREMVDSG 411



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 126/262 (48%), Gaps = 8/262 (3%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVT 109
           Y+  G++  AR LFD + + D+  W ++I    +HG + EA+  +     +  VEP+++ 
Sbjct: 21  YSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLL 80

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFD 167
            ++V  AC  +  + + + +H   E++       +V +G ALI+MY KC   + ARLVF+
Sbjct: 81  LLSVAKACASLRDVMNAKRVH---EDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
            +  +DV+ W SM   Y   G  ++AL  F +M     +P+ +T   +L AC     +  
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
           GR     +     +   V     +VN+ +    + +A +LV D     D+V W  L+ A 
Sbjct: 198 GREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQA-QLVFDSMSRRDTVSWNVLITAY 255

Query: 288 RLHGNIALGEKIAEYLISQNLA 309
            L+     G  +   ++S+ + 
Sbjct: 256 FLNKECEKGLSVFGRMMSEGVG 277



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 35/210 (16%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKP 207
            I +YS  G L+ AR +FD++   D+  W  +I     HG   +A+Q +N+      ++P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 208 SDITFIGLLSACA------HAGLVNEGRRFFNTMKDEYAIEPKVEHYG------------ 249
             +  + +  ACA      +A  V+E    F    D       ++ YG            
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 250 ------------CMVNLLSRAGQVEEAYKLVMDMKI---EPDSVLWGTLLGACRLHGNIA 294
                        M +     G + EA      M +    P+SV   ++L AC    ++ 
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 295 LGEKIAEYLISQNL-ANSGTYVLLSNIYAA 323
            G ++  +++   +  N      L N+YA+
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYAS 226


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/474 (42%), Positives = 297/474 (62%), Gaps = 21/474 (4%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VS SL+ +YA+ G++ +AE +F  M +R +VS T M+T Y++ G +A AR  FDDM  ++
Sbjct: 429 VSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRN 488

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIH 130
           V+ WN M+  Y QHG   + L ++  ML EK V P+ VT V +   C  IGA + G  I 
Sbjct: 489 VITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQII 548

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            +      + ++  V  A+I MYSKCG + +AR  FD ++ KD+V WN+MI GY+ HG G
Sbjct: 549 GHTVKV-GLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMG 607

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           K A+++F+++     KP  I+++ +LS C+H+GLV EG+ +F+ MK ++ I P +EH+ C
Sbjct: 608 KQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSC 667

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           MV+LL RAG + EA  L+ +M ++P + +WG LL AC+ HGN  L E  A++L   +   
Sbjct: 668 MVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPG 727

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
           SG Y+LL+ +YA  G  D  A+VR LM++KG++K PG S +E++N+VH F A D+ HP+ 
Sbjct: 728 SGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQV 787

Query: 371 KEIYMMLEEINGWLKAEGYV----PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
             I   L+E+   +   GYV    P+++I  H             HSEKLAVAFG++S  
Sbjct: 788 IAIREKLDELMEKIAHLGYVRTESPRSEI--H-------------HSEKLAVAFGIMSLP 832

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
               I I+KNLR+C DCH V KLIS  T R+ ++RD  RFHHF  G+CSC DYW
Sbjct: 833 AWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF    D  V T+LVD+  R G +  A K F+ +   +++   +ML  YAK   V  A  
Sbjct: 187 KFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALE 246

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  M E+DVV WN++I   ++ G   EAL +   M  + V P+  T  + L+AC ++ +
Sbjct: 247 IFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSS 306

Query: 123 LESGRWIHSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           LE G+ +H  ++  RN+  ++  V +A++ +Y+KCG  K+A+ VF  + D++ V W  +I
Sbjct: 307 LEWGKQLH--VQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLI 364

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYA 240
            G+  +G   ++++LFN+M    +         L+S C +   +  G +  +  +K  + 
Sbjct: 365 GGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHT 424

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
               V +   ++++ ++ G ++ A +L+ +   E D V W  ++ A    GNIA   K  
Sbjct: 425 RAVVVSN--SLISMYAKCGNLQNA-ELIFNFMAERDIVSWTGMITAYSQVGNIA---KAR 478

Query: 301 EYLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGV 342
           E+    +  N  T+  +   Y   G   DG+     ++ EK V
Sbjct: 479 EFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDV 521



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 167/374 (44%), Gaps = 61/374 (16%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFAT-MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +++  +L+  Y   G +  A  L    + + ++++   M+  YAK G ++ A  LF  M 
Sbjct: 60  VFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMP 119

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGR 127
            +DV  WN ++ GY Q G    AL +F  M       PN  T   V+ +CG +G  E   
Sbjct: 120 TRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVAL 179

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +   + +  + + +  V TAL++M  +CG++  A   F R+ +  ++  NSM+VGYA  
Sbjct: 180 QLLGLL-SKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKS 238

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
                AL++F  M      P                                  E  V  
Sbjct: 239 HGVDHALEIFKSM------P----------------------------------ERDVVS 258

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           +  +++ LS++G+V EA  +V+DM    + PDS  + + L AC    ++  G+++   +I
Sbjct: 259 WNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVI 318

Query: 305 SQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK---------GVQKEPGC--SSI 351
            +NL +   YV   +  +YA  G +    RV + ++++         G   + GC   S+
Sbjct: 319 -RNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESV 377

Query: 352 ELSNKVH-EFLAGD 364
           EL N++  E +A D
Sbjct: 378 ELFNQMRAELMAVD 391



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 33/239 (13%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  L  D  V  +++ +Y++ G +  A K F  + ++ LVS   M+T Y+        
Sbjct: 551 TVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYS-------- 602

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                  QHG+  +A+ +F  +L +  +P+ ++ VAVLS C   
Sbjct: 603 -----------------------QHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNS 179
           G +E G++    ++   NI   ++  + ++++  + G L +A+ + D +  K    VW +
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           ++     HG   D  +L  +       P    ++ L    A AG  ++  +    M+D+
Sbjct: 700 LLSACKTHG-NNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDK 757



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 13/170 (7%)

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDK 172
           L +CG   AL   R +HS + N     V V +   L++ Y  CG+L DAR L+ D + + 
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASV-VFLQNTLLHAYLSCGALSDARNLLRDEITEP 90

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRF 231
           +V+  N M+ GYA  G   DA++LF      R+   D+ ++  ++S    +G        
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFG-----RMPTRDVASWNTIMSGYYQSGQFLNALDI 145

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV-----MDMKIEPD 276
           F +M+      P    +GC++      G  E A +L+      D + +PD
Sbjct: 146 FVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPD 195


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/478 (41%), Positives = 306/478 (64%), Gaps = 10/478 (2%)

Query: 9   DLYVSTSLVDLYA------RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           D+Y  TS+V   A      +G DV S   +       +L     ++  YAK G V  AR+
Sbjct: 396 DIYTVTSIVHACACSSSLDKGRDVHSY--VIKNGMGSNLPVTNALINMYAKCGSVEEARL 453

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  +  KD+V WN MI GY+Q+ L NEAL LF  M  ++ +P+++T   VL AC  + A
Sbjct: 454 VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAA 512

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ GR IH +I   R    ++ V  AL++MY+KCG L  A+L+FD +  KD++ W  MI 
Sbjct: 513 LDKGREIHGHILR-RGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 571

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           GY MHGFG +A+  FNEM    ++P + +F  +L+AC+H+GL+NEG +FFN+M++E  +E
Sbjct: 572 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVE 631

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           PK+EHY C+V+LL+R G + +AYK +  M I+PD+ +WG LL  CR+H ++ L EK+AE+
Sbjct: 632 PKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEH 691

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           +      N+  YV+L+N+YA    W+ V ++R  M+++G ++ PGCS IE+  K + F+A
Sbjct: 692 IFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 751

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           G+ +HP++K+I ++L ++   ++ E Y    + VL +  + +K+     HSEK A+AFG+
Sbjct: 752 GNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGI 811

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           ++  PG ++++ KN RVC DCH + K +SK T  +I++RD NRFHHF +G CSC D +
Sbjct: 812 LNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRDAF 869



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 146/289 (50%), Gaps = 9/289 (3%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVA 58
           K  +  + Y  T ++  +A  G V   +++   + +    S T    +++  Y K G V 
Sbjct: 188 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE 247

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           +A  LFD++ E DVV WN MI+G   +G +   L +F +ML   VE +  T V+VL AC 
Sbjct: 248 SAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACA 307

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            IG L  GR +H +   +      V     L++MYSKCG+L  A  VF ++ D  +V W 
Sbjct: 308 NIGNLSLGRALHGFGVKA-CFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWT 366

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKD 237
           S+I  Y   G   DA+ LF+EM    ++P   T   ++ ACA +  +++GR   +  +K+
Sbjct: 367 SIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN 426

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                  V +   ++N+ ++ G VEEA +LV       D V W T++G 
Sbjct: 427 GMGSNLPVTN--ALINMYAKCGSVEEA-RLVFSKIPVKDIVSWNTMIGG 472



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 35/310 (11%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y   G++   R +FD +    V  WN+++  YA+ G   E++ LF++M    V  N  T 
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 198

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL     +G ++  + +H Y+        N  V  +LI  Y K G ++ A  +FD ++
Sbjct: 199 TCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS 257

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           + DVV WNSMI G  ++GF  + L++F +M  + ++    T + +L ACA+ G ++ GR 
Sbjct: 258 EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRA 317

Query: 231 ---------------FFNTMKDEYAI---------------EPKVEHYGCMVNLLSRAGQ 260
                          F NT+ D Y+                +  +  +  ++    R G 
Sbjct: 318 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGL 377

Query: 261 VEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVL 316
             +A  L  +M+   + PD     +++ AC    ++  G  +  Y+I   + +N      
Sbjct: 378 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 437

Query: 317 LSNIYAAIGN 326
           L N+YA  G+
Sbjct: 438 LINMYAKCGS 447



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 108/220 (49%), Gaps = 13/220 (5%)

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N  I+ + + G    A+ L  +  + ++  N  +  +VL  C +  +LE G+ +HS I  
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVII- 121

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           S  I V+  +G  L+ MY  CG L   R +FD++ +  V +WN ++  YA  G  ++++ 
Sbjct: 122 SNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 181

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
           LF +M ++ +  +  TF  +L   A  G V E +R        Y ++        +VN L
Sbjct: 182 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG-----YVLKLGFGSNTAVVNSL 236

Query: 256 SRA----GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             A    G VE A+ L  ++  EPD V W +++  C ++G
Sbjct: 237 IAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/487 (42%), Positives = 306/487 (62%), Gaps = 41/487 (8%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + D Y+  SLV  YA  G +  AEK+F                            
Sbjct: 158 LKHGFESDTYICNSLVHFYATCGCLDLAEKMFY--------------------------- 190

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNEVTAVAVLSACGQI 120
                M E++ V WN+MID YA+ G+ + AL +F  M  ++V +P+  T  +V+SAC  +
Sbjct: 191 ----KMSERNEVSWNIMIDSYAKGGIFDTALRMFGEM--QRVHDPDGYTMQSVISACAGL 244

Query: 121 GALESGRWIHSYI--ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
           GAL  G W+H+YI  +  +N+  +V V T L++MY K G L+ A+ VF+ +  +D+  WN
Sbjct: 245 GALSLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWN 304

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           SMI+G AMHG  K AL  +  M ++ ++ P+ ITF+G+LSAC H G+V+EG   F+ M  
Sbjct: 305 SMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTK 364

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA-CRLHGNIALG 296
           EY +EP++EHYGC+V+L +RAG++ EA  LV +M I+PD+V+W +LL A C+ + ++ L 
Sbjct: 365 EYNVEPRLEHYGCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELS 424

Query: 297 EKIAEYLISQ--NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           E++A+ +     ++ +SG YVLLS +YA+   W+ V  +R LM EKGV KEPGCS IE+ 
Sbjct: 425 EEMAKQVFESEGSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEID 484

Query: 355 NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVLHDIGEKQKQNSLEVHS 413
             VHEF AGD  HPKS+ IY ++ EI   L++ GY+P  +   + D     K N+L +HS
Sbjct: 485 GVVHEFFAGDTTHPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHS 544

Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           E+LA+AFG+++++P   I++ KNLRVC DCH V KLIS+    +I++RDR RFHHF +GT
Sbjct: 545 ERLAIAFGILNSKPDVPIRVFKNLRVCNDCHRVTKLISRIYNVEIIVRDRARFHHFKDGT 604

Query: 474 CSCGDYW 480
           CSC DYW
Sbjct: 605 CSCMDYW 611



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 28/318 (8%)

Query: 45  TTMLTCYAK--QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLAN---EALVLFRRML 99
           T +L  Y+   Q  +  A  +F      +   WN +I  YA+    N   +A+ L++ M+
Sbjct: 61  TNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIRVYARSTNTNHKHKAMELYKTMM 120

Query: 100 A--EKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
              EK   P+  T   VL AC    +L  G+ +H+++      + +  +  +L++ Y+ C
Sbjct: 121 TMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVL-KHGFESDTYICNSLVHFYATC 179

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  A  +F ++++++ V WN MI  YA  G    AL++F EM R+   P   T   ++
Sbjct: 180 GCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEMQRVH-DPDGYTMQSVI 238

Query: 217 SACAHAGLVNEG--------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           SACA  G ++ G        ++    M D+  +        C+V++  ++G++E A ++ 
Sbjct: 239 SACAGLGALSLGLWVHAYILKKCDKNMVDDVLVN------TCLVDMYCKSGELEIAKQVF 292

Query: 269 MDMKIEPDSVLWGTLLGACRLHG--NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326
             M    D   W +++    +HG    AL   +    + + + NS T+V + +     G 
Sbjct: 293 ESMAFR-DLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGM 351

Query: 327 WD-GVARVRTLMKEKGVQ 343
            D G+     + KE  V+
Sbjct: 352 VDEGIVHFDMMTKEYNVE 369


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 280/436 (64%), Gaps = 4/436 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+  GE   A  +FD M ++DVV W  +IDG+  +    EA+ LF  M+   +EPN
Sbjct: 142 LIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPN 201

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EVT  +VL AC   GAL +G  IHS+++  +N   N  V TALI+MY+KCG +  A  VF
Sbjct: 202 EVTVASVLRACADTGALNTGERIHSFVKE-KNFSSNANVSTALIDMYAKCGCIDGALEVF 260

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D   +KDV VW ++I G A HG    A++ F  M +  +K  +     +LSA  +AGLV+
Sbjct: 261 DETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVS 320

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG  FF  +K ++ I+P ++HYGC+V++L+RAG++++A + +  M IEPD+VLW TL+  
Sbjct: 321 EGLLFFRRLK-KHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWG 379

Query: 287 CRLHGNIALGEKIAEYL--ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           C++ G++   E++   L  ++ +  ++G+YVLL N+YAA G W+  A+ R LM ++G+ K
Sbjct: 380 CKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMK 439

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            P CS IE+   VHEF AGD RH ++  +Y  LE++   L+ EGY P    VL +I + +
Sbjct: 440 PPACSRIEIDGVVHEFTAGDSRHDEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDE 499

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K + L  HSEKLAV+FGL+ + PG+ I+IVKNLR C DCH+  KLISK   R I++RDR 
Sbjct: 500 KASQLLHHSEKLAVSFGLVKSSPGSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRDRI 559

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSCGD W
Sbjct: 560 RFHHFSGGNCSCGDRW 575



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 114/250 (45%), Gaps = 9/250 (3%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK----- 102
            +  +  G++  AR +   +   +   +N MI  Y+       A  LF  M         
Sbjct: 36  FSALSPSGDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVA 95

Query: 103 -VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              P+  T   VL AC + G    G+ IH  +  S  +  +  +  ALI++YS  G    
Sbjct: 96  VPRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKS-GVGSDRYINNALIHLYSVSGEPNL 154

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VFD++ D+DVV W S+I G+  +    +A++LF  M    ++P+++T   +L ACA 
Sbjct: 155 AYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACAD 214

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            G +N G R  + +K E            ++++ ++ G ++ A + V D  +E D  +W 
Sbjct: 215 TGALNTGERIHSFVK-EKNFSSNANVSTALIDMYAKCGCIDGALE-VFDETLEKDVYVWT 272

Query: 282 TLLGACRLHG 291
            ++     HG
Sbjct: 273 AIIAGLASHG 282



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 6/194 (3%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           A  G + + E++ + + +++  S     T ++  YAK G +  A  +FD+  EKDV  W 
Sbjct: 213 ADTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWT 272

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
            +I G A HGL  +A+  F  M    V+ +E    AVLSA    G +  G      ++  
Sbjct: 273 AIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKKH 332

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQ 195
           + IK  +Q    +++M ++ G LKDA     ++  + D V+W ++I G  + G  + + +
Sbjct: 333 K-IKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSER 391

Query: 196 LFNEMCRIRLKPSD 209
           L  E+  + +   D
Sbjct: 392 LVRELELLNMDSRD 405


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/445 (43%), Positives = 280/445 (62%), Gaps = 6/445 (1%)

Query: 38  QRSLVSLTTMLTCYAK-QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
           +  LV    +L  Y K    +  AR +F+ M  +DV+ WN++I  Y Q+G A +AL +F+
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFK 355

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           +M  E V PNE+T   VLSAC  +GA   G+ +H+ I + R  K +V +  +L+NMY++C
Sbjct: 356 QMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGR-CKADVVLENSLMNMYNRC 414

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           GSL D   VF  + DK +V W+++I  YA HG  +  L+ F E+ +  L   D+T +  L
Sbjct: 415 GSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SAC+H G++ EG + F +M  ++ + P   H+ CMV+LLSRAG++E A  L+ DM   PD
Sbjct: 475 SACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPD 534

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           +V W +LL  C+LH +     ++A+ L   ++     T  LLSN+YA  G WD V + R 
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN 594

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
               +  +K PGCS IE+++ VHEF+AGD  HP+ + I   ++ ++  +K  GYVP  ++
Sbjct: 595 ---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRM 651

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLH++ E++K+  L  HSEKLA+A+GLIST PGT + IVKNLR C DCHA  K IS+  G
Sbjct: 652 VLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVG 711

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           RKI++RD  RFHHF NG+CSC DYW
Sbjct: 712 RKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 170/345 (49%), Gaps = 46/345 (13%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS--------------LVSLT-------- 45
           K L    +L+  Y+R GD   A K++  M  +S              L + T        
Sbjct: 123 KTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQG 182

Query: 46  --------------------TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
                                ++  Y+K G + +AR +FD ++ +DV+ WN MI GYA+ 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
           G A +AL LF+RM     +PN VT + +L+AC  +  LE GR IH  +      + ++ +
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED-GYESDLVI 301

Query: 146 GTALINMYSKC-GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           G  L+NMY+KC  SL++AR VF+R+  +DV+ WN +IV Y  +G  KDAL +F +M    
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           + P++IT   +LSACA  G   +G+   + +      +  V     ++N+ +R G +++ 
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKA-VHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
             +   ++ +   V W TL+ A   HG+   G +    L+ + LA
Sbjct: 421 VGVFAAIR-DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLA 464



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 176/316 (55%), Gaps = 11/316 (3%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V +S  DL  + G +L A  L   + +  ++  T ++T YA+  ++  AR  FD+M +K 
Sbjct: 67  VCSSSKDL--KQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVEPNEVTAVAVLSACGQIGALESGRW 128
           +V WN +I GY+++G    AL +++ M++   E ++P+ +T  + L AC  +G +  GR 
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           I +    S     ++ V  ALINMYSKCGSL+ AR VFDR+ ++DV+ WN+MI GYA  G
Sbjct: 185 IEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQG 243

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
               AL+LF  M     KP+ +TFIGLL+AC +   + +GR     ++++   E  +   
Sbjct: 244 AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED-GYESDLVIG 302

Query: 249 GCMVNLLSR-AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
             ++N+ ++ +  +EEA ++   M+   D + W  L+ A   +G       I + +  +N
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 308 LANSGTYVLLSNIYAA 323
           +A +   + LSN+ +A
Sbjct: 362 VAPN--EITLSNVLSA 375



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 7/238 (2%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G VA A  +F  +E  + V W +++  +A++G   EAL  +RRM+ E + P+    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V  +  C     L+ G+ +H+ I  +R ++ ++ +GTALI MY++C  L+ AR  FD + 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLVNE 227
            K +V WN++I GY+ +G  + AL+++ +M       +KP  ITF   L AC   G +++
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 228 GRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           GR     T+   YA +  V++   ++N+ S+ G +E A K V D     D + W T++
Sbjct: 182 GREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARK-VFDRLKNRDVIAWNTMI 236



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 48/234 (20%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY KCGS+ DA  VF  +   + V W  ++  +A +G  ++AL  +  M    L+P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 212 FIGLLSACAHAGLVNEG------------------------------------RRFFNTM 235
           F+  +  C+ +  + +G                                    R+ F+ M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM------KIEPDSVLWGTLLGACRL 289
             +  +      +  ++   SR G    A K+  DM       ++PD++ + + L AC +
Sbjct: 121 GKKTLVT-----WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTV 175

Query: 290 HGNIALGEKI-AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            G+I+ G +I A  + S   ++S     L N+Y+  G+ +   +V   +K + V
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/437 (43%), Positives = 281/437 (64%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           + +++  Y K G + AA  LF+ M  + +V WN M+  +   GLA + +  F  M    +
Sbjct: 178 VNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGI 237

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             ++ T V++L AC  +G  +    +H YI N   +  N+ + TAL+++Y+K G+L D+ 
Sbjct: 238 NSDQATVVSLLLACENLGVRKLAEAVHGYILNG-GLDGNLAIATALLDLYAKLGTLSDSC 296

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  + + D V W +M+  YAMHG G++A++ F  M R  + P  +TF  LLSAC+H+G
Sbjct: 297 KVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSG 356

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+ +F  M + Y +E +VEHY CMV+LL R+G + +AYKL+  M +EP+S +WG L
Sbjct: 357 LVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGAL 416

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           +GACR+ GNI LG+++AE L S + ++S  Y+ LSN+Y+A G W   ++VR LMKE+ + 
Sbjct: 417 IGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLI 476

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           + PGCS IE  NK+H F+ GD  HP +++IY  LEE+    +  G+  +T+ VLHD+ E+
Sbjct: 477 RNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEE 536

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K++ +  HSEKLA+AFGL+ T  G  + I KN+R+C DCH   KLIS    R I++RD 
Sbjct: 537 VKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDT 596

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF NG CSCGDYW
Sbjct: 597 KRFHHFTNGLCSCGDYW 613



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 129/246 (52%), Gaps = 4/246 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL-VLFRRMLAEKVEP 105
           +++ Y + G    A  LFD++ +KD+V WN +I G+++       L +LFR      ++P
Sbjct: 79  LVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKP 138

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NEVT + V+SAC  +G L+ G+ IH  I     + + V+V  +LIN+Y KCG L+ A  +
Sbjct: 139 NEVTVIPVVSACAGVGELDVGKCIHG-IAVKSGMLLEVKVVNSLINLYGKCGCLEAACCL 197

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ ++ + +V WNSM+  +   G  +  +  F  M R  +     T + LL AC + G+ 
Sbjct: 198 FEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVR 257

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
                    + +   ++  +     +++L ++ G + ++ K+   M I PD+V W  +L 
Sbjct: 258 KLAEAVHGYILNG-GLDGNLAIATALLDLYAKLGTLSDSCKVFGGM-INPDAVAWTAMLS 315

Query: 286 ACRLHG 291
           +  +HG
Sbjct: 316 SYAMHG 321



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A+++A     ++   R +H  +  S N      +G  L++ Y + G  KDA  +FD + D
Sbjct: 43  ALITAISTCSSISYCRALHCRVIKSVNYNHGF-IGDQLVSSYVELGCTKDALELFDELPD 101

Query: 172 KDVVVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           KD+V WNS+I G++     G     LF     + LKP+++T I ++SACA  G ++ G+ 
Sbjct: 102 KDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKC 161

Query: 231 FFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
                +K    +E KV     ++NL  + G +E A  L   M ++   V W +++    +
Sbjct: 162 IHGIAVKSGMLLEVKV--VNSLINLYGKCGCLEAACCLFEGMSVQ-SLVSWNSMVA---V 215

Query: 290 HGNIALGEKIAEYLI 304
           H ++ L EK   Y I
Sbjct: 216 HVHMGLAEKGIGYFI 230


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 292/480 (60%), Gaps = 35/480 (7%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K   D D+YV   L+  Y   G +  A K F  MP+R                       
Sbjct: 112 KLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPER----------------------- 148

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIG 121
                   D+V W+ MI  +A++G   EAL LF+RM L   V+P+EV  ++V+SA   +G
Sbjct: 149 --------DLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILG 200

Query: 122 ALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            LE G+WI  +I  SRN ++  V +GTAL++M+S+CG ++++  VFD + +++V+ W ++
Sbjct: 201 DLELGKWIRGFI--SRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTAL 258

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A+HG   +AL++F EM     +P  +TF G+L AC+H GLV+EG   F ++++EY 
Sbjct: 259 INGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYG 318

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           +EP  EHYGCMV+LL RAG + EA K V  M I P+S++W TLLGAC  H  I L EK+ 
Sbjct: 319 MEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVK 378

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E +   +  + G YVLLSN+Y  +G W   A VR  M+EK + K+PGCS I +++ +HEF
Sbjct: 379 EKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEF 438

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AGD  HP+ + I   L  +   LK  GY P    VL DI E++K+++L  HSEKLAVAF
Sbjct: 439 VAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAF 498

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+  +   +I+++KNLR+C DCH   K  S    R+I++RDRNRFHHF  G+CSC DYW
Sbjct: 499 ALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 18/311 (5%)

Query: 47  MLTCYAK-QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +L+C A     ++ AR +FD +   D   +N +I  +A    +    +  +  +A  V P
Sbjct: 27  LLSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFSLSLFSKMTMA-GVSP 85

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T   VL AC +   L++G  +HS +        +V V   LI+ Y  CG L  A   
Sbjct: 86  DHFTFPFVLKACAR---LQTGLDLHSLL-FKLGFDSDVYVQNGLIHFYGCCGFLDFALKA 141

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGL 224
           F+ + ++D+V W+SMI  +A +GFG +AL LF  M  +  +KP ++  + ++SA +  G 
Sbjct: 142 FEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGD 201

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G ++         +E  V     +V++ SR G +EE+ + V D   E + + W  L+
Sbjct: 202 LELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMR-VFDEMGERNVLTWTALI 259

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW----DGVARVRTLMKEK 340
               +HG  A  E +  +   +N      +V  + +  A  +     +G     ++  E 
Sbjct: 260 NGLAVHGRSA--EALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEY 317

Query: 341 GVQKEP---GC 348
           G++  P   GC
Sbjct: 318 GMEPLPEHYGC 328


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/438 (43%), Positives = 286/438 (65%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G +  A  +F  + E+DVV    +I GYAQ GL  EAL LFR++  E + 
Sbjct: 230 SSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN 289

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT  +VL+A   + AL  G+ +HS++  S      V + + LI+MYSKCG++  AR 
Sbjct: 290 SNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS-LIDMYSKCGNVCYARR 348

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAG 223
           +FD + ++  + WN+M+VGY+ HG  ++ L+LF  M    ++KP  IT++ +LS C+H  
Sbjct: 349 IFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQ 408

Query: 224 LVNEGRR-FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           L + G   F+N +  +  IEP + HYGC+V+LL RAG+VEEA+  +  M   P + +WG+
Sbjct: 409 LEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGS 468

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLG+CR+H ++ +G  + + L+     N+G YV+LSN+YA+ G W+ +  +R LM+EK V
Sbjct: 469 LLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAV 528

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S +EL   VH F A D  HP+ +E+   ++E++   K +GYVP    VL+D+ E
Sbjct: 529 TKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDE 588

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L  HSEKLA+AFGLI+T  GT+I+++KNLR+C DCH+  K +S+   R +++RD
Sbjct: 589 EQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRD 648

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFH+ V G CSCGDYW
Sbjct: 649 KNRFHNIVGGVCSCGDYW 666



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 142/289 (49%), Gaps = 48/289 (16%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +  AR +FD+M +K+VV W  MI  Y+Q G A EAL LF  ML    E
Sbjct: 129 TRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTE 188

Query: 105 PNEVTAVAVLSAC-GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PN  T   +L++C G +G  E+GR IHS I   RN + ++ VG++L++MY+K G + DA 
Sbjct: 189 PNHFTFATILTSCYGSLG-FETGRQIHS-IAIKRNYESHMFVGSSLLDMYAKSGRICDAH 246

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  + ++DVV   ++I GYA  G  ++AL+LF ++    +  + +T+  +L+A +   
Sbjct: 247 GVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLA 306

Query: 224 LVNEG-----------------------------------RRFFNTMKDEYAIEPKVEHY 248
            +N G                                   RR F++M +   I      +
Sbjct: 307 ALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-----W 361

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNI 293
             M+   S+ G   E  +L   M    K++PDS+ +  +L  C  HG +
Sbjct: 362 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS-HGQL 409



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 45/268 (16%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            +L+ C    A+  G+ +H+++  +  +  +V + T LI +Y+KC  L DAR +FD +  
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLP-SVYLRTRLIVLYNKCDCLGDAREMFDEMPQ 153

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           K+VV W +MI  Y+  GF  +AL LF EM R   +P+  TF  +L++C  +     GR+ 
Sbjct: 154 KNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 213

Query: 232 F---------------NTMKDEYAIE-------------PKVEHYGC--MVNLLSRAGQV 261
                           +++ D YA               P+ +   C  +++  ++ G  
Sbjct: 214 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLD 273

Query: 262 EEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIAL--GEKIAEYLISQNLANSGTYVL 316
           EEA KL   ++IE    +SV + ++L A  L G  AL  G+++  +++    +   +YV+
Sbjct: 274 EEALKLFRQLQIEGMNSNSVTYASVLTA--LSGLAALNHGKQVHSHVLR---SGQYSYVV 328

Query: 317 LSN----IYAAIGNWDGVARVRTLMKEK 340
           L N    +Y+  GN     R+   M E+
Sbjct: 329 LLNSLIDMYSKCGNVCYARRIFDSMPER 356



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 11/154 (7%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V L +++  Y+K G V  AR +FD M E+  + WN M+ GY++HG+A E L LF+ M  
Sbjct: 327 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMRE 386

Query: 101 E-KVEPNEVTAVAVLSACGQIGALES-GRWIHSYIENSRN-IKVNVQVGTALINMYSKCG 157
           E KV+P+ +T +AVLS C   G LE  G  I   + N ++ I+ ++     ++++  + G
Sbjct: 387 ENKVKPDSITYLAVLSGCSH-GQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAG 445

Query: 158 SLKDARLVFDRVNDKDVV----VWNSMIVGYAMH 187
            +++A   FD +     V    +W S++    +H
Sbjct: 446 RVEEA---FDFIKKMPFVPTAAIWGSLLGSCRVH 476


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 282/435 (64%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YA+ G    A  LF+ +E KD + WN M+ G+AQ GL  EAL +F +M    V+ 
Sbjct: 486 ALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKY 545

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T V+ +SA   +  ++ G+ IH+ +  +       +V  ALI++Y KCGS++DA++ 
Sbjct: 546 NVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQ 604

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +++++ V WN++I   + HG+G +AL LF++M +  LKP+D+TFIG+L+AC+H GLV
Sbjct: 605 FFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 664

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG  +F +M  E+ I P+ +HY C+V++L RAGQ++ A K V +M +  ++++W TLL 
Sbjct: 665 EEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLS 724

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+H NI +GE  A+YL+     +S +YVLLSN YA  G W     VR +MK++GV+KE
Sbjct: 725 ACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKE 784

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IE+ N VH F  GD  HP + +IY  L +++  L   GY+     + H+  ++QK
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQK 844

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             +  VHSEKLAVAFGL+S  P   ++++KNLRVC DCH   K  S+  GR+I++RD  R
Sbjct: 845 DPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYR 904

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF NG CSCGD+W
Sbjct: 905 FHHFNNGNCSCGDFW 919



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 168/348 (48%), Gaps = 36/348 (10%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K   + D+YVS  L+D+Y+                               K G +  A
Sbjct: 371 SIKTGFESDMYVSGVLIDMYS-------------------------------KYGWLDKA 399

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R + + +E KDVV W  MI GY QH    EAL  F+ M    + P+ +   + +SAC  I
Sbjct: 400 RRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGI 459

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A+  G+ IHS +  S     +V +  AL+N+Y++CG  K+A  +F+ +  KD + WN M
Sbjct: 460 KAMRQGQQIHSRVYVS-GYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGM 518

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + G+A  G  ++AL++F +M +  +K +  TF+  +SA A+   + +G++   T+  +  
Sbjct: 519 VSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVI-KTG 577

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
              + E    +++L  + G +E+A     +M  E + V W T++ +C  HG       + 
Sbjct: 578 CTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHGWGLEALDLF 636

Query: 301 EYLISQNL-ANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKEP 346
           + +  + L  N  T++ +    + +G   +G+   +++  E G+   P
Sbjct: 637 DQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRP 684



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 155/337 (45%), Gaps = 49/337 (14%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK+G V  AR +F+ +  +D V W  M+ GYA++GL  EA+ L+ +M    V P 
Sbjct: 83  LIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                +VLSAC +    E GR +H+ +    +    V VG ALI +Y + GSL  A  VF
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETV-VGNALIALYLRFGSLSLAERVF 201

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +   D V +N++I  +A  G G+ AL++F EM      P  +T   LL+ACA  G +N
Sbjct: 202 SEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLN 261

Query: 227 EGRRFFNT-----MKDEYAIEPKVEHYGCMVNLLSRAGQVEE------------------ 263
           +G++  +      M  +Y IE      G +++L  + G + E                  
Sbjct: 262 KGKQLHSYLLKAGMSPDYIIE------GSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNL 315

Query: 264 ---AYKLVMDMK-------------IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
              AY  + D+              + P+   +  LL  C   G I LGE+I    I   
Sbjct: 316 MLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTG 375

Query: 308 LANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
              S  YV  +L ++Y+  G  D   R+  +++ K V
Sbjct: 376 F-ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDV 411



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 3/239 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L  Y K G +  A  +F   +  +VV WN+M+  Y Q     ++  LF +M+A  V P
Sbjct: 284 SLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRP 343

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE T   +L  C   G +  G  IH  +      + ++ V   LI+MYSK G L  AR +
Sbjct: 344 NEFTYPCLLRTCTYAGEINLGEQIH-LLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRI 402

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
            + +  KDVV W SMI GY  H F K+AL+ F +M    + P +I     +SACA    +
Sbjct: 403 LEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAM 462

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G++  + +         V  +  +VNL +R G+ +EA+ L   ++   D + W  ++
Sbjct: 463 RQGQQIHSRVYVS-GYSADVSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMV 519



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 97/197 (49%), Gaps = 33/197 (16%)

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
           G  LI++Y+K G ++ AR VF++++ +D V W +M+ GYA +G G++A+ L+++M    +
Sbjct: 80  GNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGV 139

Query: 206 KPSDITFIGLLSACAHAGLVNEGR--------------------------RF--FNTMKD 237
            P+      +LSAC  A L  +GR                          RF   +  + 
Sbjct: 140 VPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAER 199

Query: 238 EYAIEPKVEH--YGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGN 292
            ++  P  +   +  +++  ++ G  E A ++  +M++    PD V   +LL AC   G+
Sbjct: 200 VFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGD 259

Query: 293 IALGEKIAEYLISQNLA 309
           +  G+++  YL+   ++
Sbjct: 260 LNKGKQLHSYLLKAGMS 276


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/483 (39%), Positives = 302/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEV 57
           +K  +  D      L+ +  + GD+   ++L   + +     ++V   T++  YAK GE+
Sbjct: 408 MKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEM 467

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             +  +F++M+ +D++ WN +I         N  L +  RM  E V P+  T +++L  C
Sbjct: 468 GDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 527

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + A   G+ IH  I     ++ +V VG  LI MYSKCGSL+++  VF  +  KDVV W
Sbjct: 528 SLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTW 586

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            ++I    M+G GK A++ F EM    + P  + F+ ++ AC+H+GLV EG  +F+ MK 
Sbjct: 587 TALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKK 646

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           +Y IEP++EHY C+V+LLSR+  +++A   ++ M ++PDS +WG LL ACR+ G+  + E
Sbjct: 647 DYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAE 706

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           +++E +I  N  ++G YVL+SNIYAA+G WD V  +R  +K +G++K+PGCS +E+ NKV
Sbjct: 707 RVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 766

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           + F  G     + +E+  +L  + G +  EGY+   Q VLHDI E +K++ L  HSE+LA
Sbjct: 767 YVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLA 826

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL++T+PGT ++++KNLRVC DCH V K ISK   R++++RD NRFH F +G CSCG
Sbjct: 827 IAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCG 886

Query: 478 DYW 480
           DYW
Sbjct: 887 DYW 889



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 157/318 (49%), Gaps = 35/318 (11%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DLY+  +L+D+Y R  D+                                 AR +F++M 
Sbjct: 149 DLYIGNALIDMYCRFNDL-------------------------------DKARKVFEEMP 177

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +DVV WN +I GY  +G  NEAL ++ R     V P+  T  +VL ACG +G++E G  
Sbjct: 178 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 237

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  IE    IK +V V   L++MY K   L D R +FD++  +D V WN+MI GY+  G
Sbjct: 238 IHGLIEKI-GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 296

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +++++LF EM   + KP  +T   +L AC H G +  G+   + M      E      
Sbjct: 297 LYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTAS 354

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++N+ ++ G +  + ++   MK + DSV W +++     +G+     K+ + + +   
Sbjct: 355 NILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 413

Query: 309 ANSGTYVLLSNIYAAIGN 326
            +S TYV+L ++   +G+
Sbjct: 414 PDSVTYVMLLSMSTQLGD 431



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 146/297 (49%), Gaps = 36/297 (12%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  + KD+ V+  L+ +Y +   ++   ++F  M  R  VS  TM+              
Sbjct: 244 KIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC------------- 290

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                             GY+Q GL  E++ LF  M+  + +P+ +T  ++L ACG +G 
Sbjct: 291 ------------------GYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGD 331

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           LE G+++H Y+  S   + +      LINMY+KCG+L  ++ VF  +  KD V WNSMI 
Sbjct: 332 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 390

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  +G   +A++LF +M +  +KP  +T++ LLS     G ++ G+     +  +    
Sbjct: 391 VYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLA-KMGFN 448

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
             +     +V++ ++ G++ ++ K+  +MK   D + W T++ +C    +  LG ++
Sbjct: 449 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRM 504



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 44/308 (14%)

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +V  WN +I     +GL +EAL L+      +++P+  T  +V++AC  +   E  + IH
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             + +      ++ +G ALI+MY +   L  AR VF+ +  +DVV WNS+I GY  +G+ 
Sbjct: 139 DRVLD-MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 197

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE----------------------- 227
            +AL+++     + + P   T   +L AC   G V E                       
Sbjct: 198 NEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 257

Query: 228 ------------GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KI 273
                       GRR F+ M    A+      +  M+   S+ G  EE+ KL M+M  + 
Sbjct: 258 LSMYCKFNGLIDGRRIFDKMVLRDAVS-----WNTMICGYSQVGLYEESIKLFMEMVNQF 312

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVAR 332
           +PD +   ++L AC   G++  G+ + +Y+I+     ++    +L N+YA  GN      
Sbjct: 313 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 372

Query: 333 VRTLMKEK 340
           V + MK K
Sbjct: 373 VFSGMKCK 380


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/430 (44%), Positives = 273/430 (63%), Gaps = 1/430 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK G V  AR +FD M  +DVV W  M++ Y       E   LF RML   ++PNE T 
Sbjct: 207 YAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTY 266

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
             VL AC +  + + G+ +H  +  SR    +    +AL++MYSK G +  A  VF  + 
Sbjct: 267 AGVLRACAEFTSEKLGKQVHGRMTKSRAGD-SCFAESALVHMYSKYGDMGTAVRVFRGMP 325

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             D+V W +MI GYA +G   +AL+ F+ + R   +P  +TF+G+LSACAHAGLV++G  
Sbjct: 326 KLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLS 385

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
            F+++KDEY IE   +HY C+++LLSR+G  E A +++  M ++P+  LW +LLG CR+H
Sbjct: 386 IFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIH 445

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
            N+ L    AE L      N  TYV L+NIYA++G +D V   R +M+ KG+ K P  S 
Sbjct: 446 KNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSW 505

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLE 410
           IE+  ++H FL GD  HP+++++Y +L+++   ++ EGYV  T  VLHD+ ++QKQ  + 
Sbjct: 506 IEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIG 565

Query: 411 VHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470
            HSE+LAVAFG+I+T  G  IK+ KNLR+C DCH   KLISK   R+I++RD NRFHHF 
Sbjct: 566 YHSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFK 625

Query: 471 NGTCSCGDYW 480
           NG+CSC DYW
Sbjct: 626 NGSCSCRDYW 635



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 38/308 (12%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGE-VAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
           A  L +++P   + S  T++    +    +A+AR LFD M  +D   W+ ++  +A+HG 
Sbjct: 80  ALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHARHGQ 139

Query: 88  ANEALVLFRRMLAEKVEP---NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
              AL ++RRML E       NE TA + L+A        +GR +H ++   R I  +  
Sbjct: 140 PRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVR-RGIDADAV 198

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V +AL +MY+KCG + DAR VFDR+  +DVV W +M+  Y       +  +LF  M R  
Sbjct: 199 VWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSG 258

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE---------------------- 242
           ++P++ T+ G+L ACA       G++    M    A +                      
Sbjct: 259 IQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAV 318

Query: 243 ------PKVE--HYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHG 291
                 PK++   +  M++  ++ GQ +EA   + +++     PD V +  +L AC   G
Sbjct: 319 RVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAG 378

Query: 292 NIALGEKI 299
            +  G  I
Sbjct: 379 LVDKGLSI 386



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 4/185 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K G++  A  +F  M + D+V W  MI GYAQ+G  +EAL  F  +L     
Sbjct: 302 SALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCR 361

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+ VT V VLSAC   G ++ G  I   I++   I+        +I++ S+ G  + A  
Sbjct: 362 PDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEE 421

Query: 165 VFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHA 222
           + + ++ K +  +W S++ G  +H   +  L  +       ++P +  T++ L +  A  
Sbjct: 422 MINTMSVKPNKFLWASLLGGCRIHKNVR--LARWAAEALFEIEPENPATYVTLANIYASV 479

Query: 223 GLVNE 227
           GL +E
Sbjct: 480 GLFDE 484


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/483 (41%), Positives = 289/483 (59%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+  + ++++V ++LV LYAR   V  A  +F  MP R +VS   +LT Y    E     
Sbjct: 260 VRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGL 319

Query: 62  VLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
            LF  M  K    D   WN +I G  ++G   +A+ + R+M     +PN++T  + L AC
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPAC 379

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + +L  G+ +H Y+     I  ++   TAL+ MY+KCG L  +R VFD +  KDVV W
Sbjct: 380 SILESLRMGKEVHCYVFRHWLIG-DLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAW 438

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+MI+  AMHG G++ L LF  M +  +KP+ +TF G+LS C+H+ LV EG + FN+M  
Sbjct: 439 NTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGR 498

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           ++ +EP   HY CMV++ SRAG++ EAY+ +  M +EP +  WG LLGACR++ N+ L +
Sbjct: 499 DHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAK 558

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
             A  L      N G YV L NI      W   +  R LMKE+G+ K PGCS +++ ++V
Sbjct: 559 ISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRV 618

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H F+ GD  + +S +IY  L+E+   +K+ GY P T  VL DI +++K  SL  HSEKLA
Sbjct: 619 HTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLA 678

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           VAFG+++    +SI++ KNLR+C DCH   K +SK  G  I++RD  RFHHF NG CSC 
Sbjct: 679 VAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQ 738

Query: 478 DYW 480
           D W
Sbjct: 739 DLW 741



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 141/300 (47%), Gaps = 41/300 (13%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   V  AR +FDD+  KDVV W  M   Y   GL    L +F  M    V+PN
Sbjct: 173 LIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPN 232

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT  ++L AC ++  L+SGR IH +      I+ NV V +AL+++Y++C S+K ARLVF
Sbjct: 233 SVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE-NVFVCSALVSLYARCLSVKQARLVF 291

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  +DVV WN ++  Y  +      L LF++M    ++  + T+  ++          
Sbjct: 292 DLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIG--------- 342

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
                                 GCM N     GQ E+A +++  M+    +P+ +   + 
Sbjct: 343 ----------------------GCMEN-----GQTEKAVEMLRKMQNLGFKPNQITISSF 375

Query: 284 LGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           L AC +  ++ +G+++  Y+    L  +  T   L  +YA  G+ +    V  ++  K V
Sbjct: 376 LPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDV 435



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 3/232 (1%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G+   A+ LFD++ + D    + +I  +   GL NEA+ L+  + A  ++P+    + V 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            ACG  G     + +H        +  +  +G ALI+ Y KC  ++ AR VFD +  KDV
Sbjct: 140 KACGASGDASRVKEVHDDAIRC-GMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W SM   Y   G  +  L +F EM    +KP+ +T   +L AC+    +  GR     
Sbjct: 199 VSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGF 258

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                 IE  V     +V+L +R   V++A +LV D+    D V W  +L A
Sbjct: 259 AVRHGMIE-NVFVCSALVSLYARCLSVKQA-RLVFDLMPHRDVVSWNGVLTA 308


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/439 (43%), Positives = 274/439 (62%), Gaps = 7/439 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK   +A A  +F+ +  + V+ W  ++  YA +G   +AL +F  M  + VEP 
Sbjct: 199 LINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPT 258

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EVT V V+  C  I     GR +H  I+     + NV VG ALINMY KC S  +AR VF
Sbjct: 259 EVTFVTVVDVCADIAVFGIGREVHGVIDARS--EANVCVGNALINMYGKCASPDEARKVF 316

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-----PSDITFIGLLSACAH 221
           D +  KD++ WNSMI  Y  +G+G  AL+++  M   R+        DITFIG+L AC+H
Sbjct: 317 DAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSH 376

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AGLV +  + +++M  +Y  +P     GC+++LL RAG ++EA + +  M   PD  +W 
Sbjct: 377 AGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWT 436

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
            LLGAC  H ++    + A+ +++    +SG+YV LSN+YA    WD +AR+R LM ++G
Sbjct: 437 ILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRG 496

Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
           V K  G SSIE+   +HEF+AGD  HP+ +EIY  L  I G ++  GYVP  + VLH+  
Sbjct: 497 VFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAA 556

Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
            + K+     HSE+LA+AFG+IS+  GT ++I+KNLRVCPDCH+  K+ISKF+GRKI++R
Sbjct: 557 REAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVR 616

Query: 462 DRNRFHHFVNGTCSCGDYW 480
           D NRFH F NG+CSC DYW
Sbjct: 617 DANRFHEFRNGSCSCEDYW 635



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 12/239 (5%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G + AA+ +F     ++V  W +M+  +A +G   +AL L   M  E + PN +T 
Sbjct: 102 YGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITF 161

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           + +L A   +  L+ GR +H  I        ++ V   LINMY+KC SL DA  VF+ + 
Sbjct: 162 IELLGAVAALSWLDRGRALHRRIACC-GFLADIFVANCLINMYAKCRSLADACSVFESLT 220

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            + V+ W +++  YA++GF +DAL++F  M    ++P+++TF+ ++  CA   +   GR 
Sbjct: 221 SRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGRE 280

Query: 231 FFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
                     I+ + E   C    ++N+  +    +EA K V D     D + W +++ 
Sbjct: 281 VHGV------IDARSEANVCVGNALINMYGKCASPDEARK-VFDAMQRKDIITWNSMIA 332



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 34/273 (12%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V P+       L  CG   A+  G+ IH +I      K +  +   L+ MY KCGSL+ A
Sbjct: 53  VSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLC-GFKSSRYLCNLLVEMYGKCGSLQAA 111

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VF     ++V  W  M+  +A +G   DAL L   M    + P+ ITFI LL A A  
Sbjct: 112 KSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAAL 171

Query: 223 GLVNEGRRFFNT------MKDEYAIEPKVEHY--------GCMV--NLLSRA-------- 258
             ++ GR           + D +     +  Y         C V  +L SR+        
Sbjct: 172 SWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALV 231

Query: 259 ------GQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
                 G   +A K+ + M    +EP  V + T++  C       +G ++   + +++ A
Sbjct: 232 AAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARSEA 291

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           N      L N+Y    + D   +V   M+ K +
Sbjct: 292 NVCVGNALINMYGKCASPDEARKVFDAMQRKDI 324


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/452 (44%), Positives = 298/452 (65%), Gaps = 5/452 (1%)

Query: 12  VSTSLVDLYARGGDVLSAEK-LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           V+ SL+ LY   G +  A + L++      +VS  TM++ Y K G++ AAR +F  M E+
Sbjct: 115 VTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           ++V W+ M+D   + G   EAL +F RM+ E+  P+ V  V+VL AC  +GA+E GRW+H
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234

Query: 131 SYIENSR--NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
            Y+E       + N+ + TAL++MY KCG ++DA  VFD V+ +DVV+WN+MI G AM+G
Sbjct: 235 RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNG 294

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           +G+ AL+LF  M +    P++ TFI +L AC H G V+EG+R F +M+D Y I+P+ EHY
Sbjct: 295 YGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKPQREHY 353

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           GC+ +LL RAG VEEA  L++DM +EP +  WG L+ +C++H +I +GE++ + LI    
Sbjct: 354 GCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEP 413

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
            + G YV+L N+YA  G W+    +R +M+++G +KE G S IEL+  VHEF++GD RHP
Sbjct: 414 YDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHP 473

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQP 427
            +++IY +LE+I   L+  GYV  T  V+ D+  E+ K  +L  HSE+LA+AFG+++   
Sbjct: 474 LTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQ 533

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           G  I+IVKNLRVC DCH   KL+SK   R+I+
Sbjct: 534 GVPIRIVKNLRVCRDCHVHSKLVSKLYEREII 565


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/438 (44%), Positives = 292/438 (66%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K G++  AR LFD + ++ VV WN MI GY Q+GLA  A+ ++R M   +V 
Sbjct: 148 TALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVV 207

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T VA LSAC Q GAL+ GR +   I  S  + V+V +G+AL+NMY++CG +  AR 
Sbjct: 208 PDSATFVATLSACAQAGALDLGREVERRIV-SDQMDVSVFLGSALVNMYARCGLVSKARD 266

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            FDR+ +++VV W SMI GY MHG G++A++LF+ M R    P+D+TF+ +L+ACAHAGL
Sbjct: 267 WFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGL 326

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTL 283
           VNEGR  F++MK  Y + P+ EHY  MV++  RAG +++A + + D +  EP   +W  +
Sbjct: 327 VNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAM 386

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N  LG ++AE LI+    N    VLLSNIYA  G  + V +VR +M ++ ++
Sbjct: 387 LGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLK 446

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+ G S IEL    H F  G+  H +++EIY  LEE+   +   GYVP+T  VLH++ E+
Sbjct: 447 KQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRISDAGYVPETDSVLHELEEE 506

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTS-IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +++ +L  HSEKLAVA+GL+ +   T+ I+++KNLR+C DCH   K +S    R+I++RD
Sbjct: 507 EREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDCHLAIKFMSSVESREIIVRD 566

Query: 463 RNRFHHFVNGTCSCGDYW 480
           ++RFHHF +G CSC +YW
Sbjct: 567 KHRFHHFKDGKCSCLEYW 584



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 3/210 (1%)

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           A  GL  EA+  + R+LA  +  +     A   AC  + AL +G  +H++         +
Sbjct: 85  AHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAH-SVLLGFGSD 143

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
             V TAL+ +YSKCG L  AR +FD + D+ VV WN+MI GY  +G  + A++++ EM  
Sbjct: 144 RFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQV 203

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
            ++ P   TF+  LSACA AG ++ GR     +  +  ++  V     +VN+ +R G V 
Sbjct: 204 AQVVPDSATFVATLSACAQAGALDLGREVERRIVSD-QMDVSVFLGSALVNMYARCGLVS 262

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +A     D   E + V W +++    +HG+
Sbjct: 263 KARDW-FDRLQERNVVTWTSMIAGYGMHGH 291


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/453 (43%), Positives = 287/453 (63%), Gaps = 6/453 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +F    Q   + LT ++  Y+       A  +FD+M  +D V WNVMI    ++    +A
Sbjct: 65  IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124

Query: 92  LVLFRRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTA 148
           L LF  +   + K EP++VT + +L AC  + ALE G  IH Y+ E+     +N+    A
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLS--NA 182

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI+MYS+CG L  A  VF    +K+VV W++MI G AM+G+G++A++ F EM RI ++P 
Sbjct: 183 LISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPD 242

Query: 209 DITFIGLLSACAHAGLVNEGR-RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           D T  G+LSAC+++G+V+EG   FF+ M  E+ + P V HYGCMV+LL  AG +++A +L
Sbjct: 243 DQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQL 302

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
           +M M  +PDS  W TLLGACR+HG++ LGE++  +LI      +G +VLL NIY++ G+W
Sbjct: 303 IMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHW 362

Query: 328 DGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE 387
           + VA VR LMK K +Q  PGCS+IEL   VHEF+  D+ H ++ EIY  L+EIN  L+  
Sbjct: 363 EKVAEVRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIA 422

Query: 388 GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVF 447
           GYV +    LH + +K+K   L  HSEKLA+AFG+++T PGT++++  NLR+C DC    
Sbjct: 423 GYVVELSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFL 482

Query: 448 KLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           K  S      +++RD NRFHHF  G CSC +YW
Sbjct: 483 KHFSGVYNGDVILRDHNRFHHFRGGCCSCSNYW 515



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           +N MI   +      + L+L+R M    +  + +++  V+ +C ++  L     +  +  
Sbjct: 5   YNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCN 64

Query: 135 NSR-NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             +   + +  + TA++++YS C    DA  VFD +  +D V WN MI     +   +DA
Sbjct: 65  IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124

Query: 194 LQLFN--EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           L LF+  +    + +P D+T + LL ACAH   +  G R    M  E+     +     +
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMM-EHGYGGALNLSNAL 183

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           +++ SR G +++A + V       + V W  ++    ++G
Sbjct: 184 ISMYSRCGCLDKAXE-VFKGTGNKNVVSWSAMISGLAMNG 222


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/438 (43%), Positives = 286/438 (65%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G +  A  +F  + E+DVV    +I GYAQ GL  EAL LFR++  E + 
Sbjct: 202 SSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN 261

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT  +VL+A   + AL  G+ +HS++  S      V +  +LI+MYSKCG++  AR 
Sbjct: 262 SNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLL-NSLIDMYSKCGNVCYARR 320

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAG 223
           +FD + ++  + WN+M+VGY+ HG  ++ L+LF  M    ++KP  IT++ +LS C+H  
Sbjct: 321 IFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQ 380

Query: 224 LVNEGRR-FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           L + G   F+N +  +  IEP + HYGC+V+LL RAG+VEEA+  +  M   P + +WG+
Sbjct: 381 LEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGS 440

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLG+CR+H ++ +G  + + L+     N+G YV+LSN+YA+ G W+ +  +R LM+EK V
Sbjct: 441 LLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAV 500

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S +EL   VH F A D  HP+ +E+   ++E++   K +GYVP    VL+D+ E
Sbjct: 501 TKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDE 560

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L  HSEKLA+AFGLI+T  GT+I+++KNLR+C DCH+  K +S+   R +++RD
Sbjct: 561 EQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRD 620

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFH+ V G CSCGDYW
Sbjct: 621 KNRFHNIVGGVCSCGDYW 638



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 48/289 (16%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y K   +  AR +FD+M +++VV W  MI  Y+Q G A EAL LF  ML    E
Sbjct: 101 TRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTE 160

Query: 105 PNEVTAVAVLSAC-GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PN  T   +L++C G +G  E+GR IHS I   RN + ++ VG++L++MY+K G + DA 
Sbjct: 161 PNHFTFATILTSCYGSLG-FETGRQIHS-IAIKRNYESHMFVGSSLLDMYAKSGRICDAH 218

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  + ++DVV   ++I GYA  G  ++AL+LF ++    +  + +T+  +L+A +   
Sbjct: 219 GVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLA 278

Query: 224 LVNEG-----------------------------------RRFFNTMKDEYAIEPKVEHY 248
            +N G                                   RR F++M +   I      +
Sbjct: 279 ALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-----W 333

Query: 249 GCMVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNI 293
             M+   S+ G   E  +L   M    K++PDS+ +  +L  C  HG +
Sbjct: 334 NAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS-HGQL 381



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 45/268 (16%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           ++L+ C    A+  G+ +H+++  +  +  +V + T LI +Y+KC  L DAR +FD +  
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLP-SVYLRTRLIVLYNKCDCLGDARGMFDEMPQ 125

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++VV W +MI  Y+  GF  +AL LF EM R   +P+  TF  +L++C  +     GR+ 
Sbjct: 126 RNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 185

Query: 232 F---------------NTMKDEYAIE-------------PKVEHYGC--MVNLLSRAGQV 261
                           +++ D YA               P+ +   C  +++  ++ G  
Sbjct: 186 HSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLD 245

Query: 262 EEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIAL--GEKIAEYLISQNLANSGTYVL 316
           EEA KL   ++IE    +SV + ++L A  L G  AL  G+++  +++    +   +YV+
Sbjct: 246 EEALKLFRQLQIEGMNSNSVTYASVLTA--LSGLAALNHGKQVHSHVLR---SGQYSYVV 300

Query: 317 LSN----IYAAIGNWDGVARVRTLMKEK 340
           L N    +Y+  GN     R+   M E+
Sbjct: 301 LLNSLIDMYSKCGNVCYARRIFDSMPER 328



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 11/154 (7%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V L +++  Y+K G V  AR +FD M E+  + WN M+ GY++HG+A E L LF+ M  
Sbjct: 299 VVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMRE 358

Query: 101 E-KVEPNEVTAVAVLSACGQIGALES-GRWIHSYIENSRN-IKVNVQVGTALINMYSKCG 157
           E KV+P+ +T +AVLS C   G LE  G  I   + N ++ I+ ++     ++++  + G
Sbjct: 359 ENKVKPDSITYLAVLSGCSH-GQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAG 417

Query: 158 SLKDARLVFDRVNDKDVV----VWNSMIVGYAMH 187
            +++A   FD +     V    +W S++    +H
Sbjct: 418 RVEEA---FDFIKKMPFVPTAAIWGSLLGSCRVH 448


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 295/472 (62%), Gaps = 13/472 (2%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL++ T L  L A+ G                L +  ++L+ YAK G +  A + FD++ 
Sbjct: 322 DLHMGTQLHALIAKSG------------IHADLTASNSLLSMYAKAGLINEATMFFDEIA 369

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KD + +  ++ G  Q+G A EA ++F++M A  +EP+  T V+++ AC  + AL+ G+ 
Sbjct: 370 VKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKC 429

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
            H  +   R + +   +  +LI+MY+KCG +  +R VFD++  +DVV WN+MI GY +HG
Sbjct: 430 SHGSV-IIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            GK+A  LF  M      P D+TFI L++AC+H+GLV EG+ +F+TM  +Y I P++EHY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+R G ++EAY+ +  M ++ D  +WG LLGACR+H NI LG++++  +     
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
             +G +VLLSNI++A G +D  A VR + K KG +K PG S IE++  +H F+ GD  HP
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHP 668

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            S++IY  L+ I   +K  GY   T  VL D+ E++K+ +L  HSEKLA+AFG++S    
Sbjct: 669 CSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNED 728

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I + KNLRVC DCH   K ++    R I++RD NRFHHF NG CSCG++W
Sbjct: 729 KTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 172/388 (44%), Gaps = 61/388 (15%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K++    L   ++LVDL  R G  + A    A +     VS T ++  Y +      AR 
Sbjct: 100 KYTFPFVLKACSALVDL--RAGRTIHAHAAAAGLHTDLFVS-TALIDLYIRCARFGPARN 156

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIG 121
           +F  M  +DVV WN M+ GYA HG+ + A+     M     + PN  T V++L    Q G
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216

Query: 122 ALESGRWIHSYIENS--RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           AL  G  IH+Y   +     +  V +GTAL++MY+KC  L  A  VF  +  ++ V W++
Sbjct: 217 ALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSA 276

Query: 180 MIVGYAMHGFGKDALQLFNEM--------------CRIRLKPS----------------- 208
           +I G+ +     +A  LF +M                +R+  S                 
Sbjct: 277 LIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS 336

Query: 209 ----DITFI-GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
               D+T    LLS  A AGL+NE   FF    DE A++  +  YG +++   + G+ EE
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFF----DEIAVKDTIS-YGALLSGCVQNGKAEE 391

Query: 264 AYKLVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYL-ISQNLANSGTY 314
           A+ +   M+   +EPD     +L+ AC       HG  + G  I   L +  ++ NS   
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNS--- 448

Query: 315 VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             L ++YA  G  D   +V   M  + V
Sbjct: 449 --LIDMYAKCGKIDLSRQVFDKMPARDV 474



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 15/246 (6%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
           L  +  +G++A AR +FD +   D   +N +I  Y+  G  + A+ L+R ML  +V PN+
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
            T   VL AC  +  L +GR I      +  +  ++ V TALI++Y +C     AR VF 
Sbjct: 101 YTFPFVLKACSALVDLRAGRTI-HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           ++  +DVV WN+M+ GYA HG    A+  L +      L+P+  T + LL   A  G + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 227 EGRRFFNTMKDEYAIEPKVEHY-------GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +G     T    Y +   +E           ++++ ++  Q+  A ++   M +  D V 
Sbjct: 220 QG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VT 273

Query: 280 WGTLLG 285
           W  L+G
Sbjct: 274 WSALIG 279


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/453 (41%), Positives = 275/453 (60%), Gaps = 19/453 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML------ 99
            ++  YA+ GE+  AR +F  ++ +DVV WN +I G    G A EA  L   M       
Sbjct: 427 ALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSP 486

Query: 100 ----------AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
                     A +  PN +T + +L  C  + A   G+ IH Y      ++ ++ VG+AL
Sbjct: 487 SSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVR-HALESDIAVGSAL 545

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPS 208
           ++MY+KCG L  +R VFDR+  ++V+ WN +I+ Y MHG G +A+ LF+EM       P+
Sbjct: 546 VDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPN 605

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           ++TFI  L+AC+H+GLV+ G   F+ M+ ++ ++P  + + C+V++L RAG+++EAY ++
Sbjct: 606 EVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSII 665

Query: 269 MDMKIEPDSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
             M+     V  W +LLGACRLH N+ LGE  AE L       +  YVLL NIY+A G W
Sbjct: 666 TSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMW 725

Query: 328 DGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE 387
           D    VR  M+ +GV KEPGCS IEL   +H F+AG+  HP S E++  ++ +   ++ E
Sbjct: 726 DKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRRE 785

Query: 388 GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVF 447
           GY P T  VLHD+ E +K   L  HSEKLA+AFGL+   PG +I++ KNLRVC DCH   
Sbjct: 786 GYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAA 845

Query: 448 KLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           K +SK  GR I++RD  RFHHF +G+CSCGDYW
Sbjct: 846 KFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 22/266 (8%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           + ++  YA   +VA+AR +FD + E  + +  WN MI GYAQ G+  EAL LF RM AE 
Sbjct: 322 SALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEA 381

Query: 103 -VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              P+E T   VL AC +         +H Y+   R +  N  V  AL++MY++ G +  
Sbjct: 382 GCAPSETTMSGVLPACARSEGFAGKEAMHGYVVK-RGMAGNRFVQNALMDMYARLGEMDV 440

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI----------------RL 205
           AR +F  ++ +DVV WN++I G  + G   +A QL  EM                   R 
Sbjct: 441 ARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRC 500

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
            P++IT + LL  CA       G+   +     +A+E  +     +V++ ++ G +  A 
Sbjct: 501 MPNNITLMTLLPGCAALAAPARGKE-IHGYAVRHALESDIAVGSALVDMYAKCGCL-AAS 558

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHG 291
           + V D     + + W  L+ A  +HG
Sbjct: 559 RAVFDRLPRRNVITWNVLIMAYGMHG 584



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 15/267 (5%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK------DVVCWNVMIDGYAQHGLANEAL 92
           R       +L+ YA+ G V  A+ LF            DVV WN MI    Q G   EA+
Sbjct: 208 RERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAV 267

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
            +   M++  V P+ VT  + L AC ++  L  GR +H+ +    ++  N  V +AL++M
Sbjct: 268 EVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDM 327

Query: 153 YSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSD 209
           Y+    +  AR VFD V +  + + +WN+MI GYA  G  ++AL+LF+ M       PS+
Sbjct: 328 YAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSE 387

Query: 210 ITFIGLLSACAHA-GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            T  G+L ACA + G   +       +K   A    V++   ++++ +R G+++ A ++ 
Sbjct: 388 TTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQN--ALMDMYARLGEMDVARRIF 445

Query: 269 MDMKIEP-DSVLWGTLLGACRLHGNIA 294
               I+P D V W TL+  C + G+ A
Sbjct: 446 --AMIDPRDVVSWNTLITGCVVQGHAA 470



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           + ++  YAK G +AA+R +FD +  ++V+ WNV+I  Y  HGL +EA+ LF  M A  + 
Sbjct: 543 SALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEA 602

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNEVT +A L+AC   G ++ G  +   +E    +K    +   ++++  + G L +A 
Sbjct: 603 TPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAY 662

Query: 164 LVFDRV--NDKDVVVWNSMIVGYAMH 187
            +   +   ++ V  W+S++    +H
Sbjct: 663 SIITSMEPGEQQVSAWSSLLGACRLH 688



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 62/354 (17%)

Query: 46  TMLTCYAKQG--EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-K 102
            +LT YA+ G  + A A       E +D V +N +I           AL   R MLAE +
Sbjct: 105 ALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGR 164

Query: 103 VEPNEVTAVAVLSACGQIGALES---GRWIHSYI-------ENSRNIKVNVQVGTALINM 152
            + +  T V+VL AC  +   +    GR  H++        E       N     AL++M
Sbjct: 165 HDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFN-----ALLSM 219

Query: 153 YSKCGSLKDARLVFDRV------NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
           Y++ G + DA+ +F            DVV WN+MI      G   +A+++  +M  + ++
Sbjct: 220 YARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVR 279

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFF----------------NTMKDEYAIEPKVEH--- 247
           P  +TF   L AC+   ++  GR                   + + D YA   KV     
Sbjct: 280 PDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARR 339

Query: 248 --------------YGCMVNLLSRAGQVEEAYKLVMDMKIE----PDSVLWGTLLGACRL 289
                         +  M+   ++AG  EEA +L   M+ E    P       +L AC  
Sbjct: 340 VFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR 399

Query: 290 HGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
               A  E +  Y++ + +A N      L ++YA +G  D   R+  ++  + V
Sbjct: 400 SEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDV 453



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 104/254 (40%), Gaps = 50/254 (19%)

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLF 197
           + +  VG AL+  Y++CG L  A  +F       +D V +NS+I    +    + AL   
Sbjct: 97  RPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDAL 156

Query: 198 NEM-CRIRLKPSDITFIGLLSACAH-------------------AGLVNEGR-RF-FNTM 235
            +M    R   S  T + +L AC+H                    G ++EGR RF FN +
Sbjct: 157 RDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNAL 216

Query: 236 KDEYA------------------IEP---KVEHYGCMVNLLSRAGQVEEAYKLVMDM--- 271
              YA                    P    V  +  M++LL + G+  EA +++ DM   
Sbjct: 217 LSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSL 276

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKI-AEYLISQNL-ANSGTYVLLSNIYAAIGNWDG 329
            + PD V + + L AC     +ALG ++ A  L   +L ANS     L ++YA       
Sbjct: 277 GVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVAS 336

Query: 330 VARVRTLMKEKGVQ 343
             RV  ++ E   Q
Sbjct: 337 ARRVFDMVPEPSRQ 350


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/530 (39%), Positives = 315/530 (59%), Gaps = 53/530 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K S ++ +  S +L+D+Y++ GD+  A ++F  M +R++VS T+M+  Y + G    A 
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAI 337

Query: 62  VLFDDMEE--------------------------KDV--------------VCWNVMIDG 81
           +L   ME+                          KDV              VC N ++D 
Sbjct: 338 ILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC-NALMDM 396

Query: 82  YAQHGLANEALVLFRRMLAEKV----------EPNEVTAVAVLSACGQIGALESGRWIHS 131
           YA+ G    A  +F  M+ + +          +P+  T   +L AC  + ALE G+ IH 
Sbjct: 397 YAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHG 456

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI  +     +  V  AL+++Y KCG L  ARL+FD +  KD+V W  MI GY MHG+G 
Sbjct: 457 YILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+  FNEM    ++P +++FI +L AC+H+GL+ +G RFF  MK+++ IEPK+EHY CM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LLSR G + +AYK +  + I PD+ +WG LL  CR++ +I L EK+AE +      N+
Sbjct: 576 VDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLRHPKS 370
           G YVLL+NIYA     + V R+R  + +KG++K PGCS IE+  +V+ F++G +  HP S
Sbjct: 636 GYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHS 695

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
           K+I  +L+++   +K EGY P+T+  L +  E QK+ +L  HSEKLA+AFGL++  P  +
Sbjct: 696 KKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I++ KNLRVC DCH + K +SK T R+I++RD NRFHHF +G CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 41/365 (11%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA------ 58
           S+  D  +   LV  YA  GD+    ++F TM ++++     M++ YAK G+        
Sbjct: 129 SVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLF 188

Query: 59  --------------AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
                         +A  LFD + ++DV+ WN MI GY  +GL    L ++++M+   ++
Sbjct: 189 KIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            +  T ++VL  C   G L  G+ +HS  I++S   ++N      L++MYSKCG L  A 
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS--NTLLDMYSKCGDLDGAL 306

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+++ +++VV W SMI GY   G+   A+ L  +M +  +K   +    +L ACA +G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM------------ 271
            ++ G+   + +K    +   +     ++++ ++ G +E A  +   M            
Sbjct: 367 SLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV 425

Query: 272 -KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWD 328
            +++PDS     +L AC     +  G++I  Y++ +N  +S  +V   L ++Y   G   
Sbjct: 426 GELKPDSRTMACILPACASLSALERGKEIHGYIL-RNGYSSDRHVANALVDLYVKCGVL- 483

Query: 329 GVARV 333
           G+AR+
Sbjct: 484 GLARL 488



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 148/360 (41%), Gaps = 90/360 (25%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +  V  +N  I  + Q G    A+ L    + +K E    T  +VL  C  + +L  G+ 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELV--CMCQKSELETKTYGSVLQLCAGLKSLTDGKK 120

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--------------------- 167
           +HS I+ S ++ V+  +G  L++ Y+ CG LK+ R VFD                     
Sbjct: 121 VHSIIK-SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 168 ------------------------------RVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
                                         ++ D+DV+ WNSMI GY  +G  +  L ++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYAI- 241
            +M  + +     T I +L  CA++G ++ G+                F NT+ D Y+  
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 242 --------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLL 284
                         E  V  +  M+   +R G  + A  L+  M+   ++ D V   ++L
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSIL 359

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC   G++  G+ + +Y+ + N+A S  +V   L ++YA  G+ +G   V + M  K +
Sbjct: 360 HACARSGSLDNGKDVHDYIKANNMA-SNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDI 418


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 295/472 (62%), Gaps = 13/472 (2%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DL++ T L  L A+ G                L +  ++L+ YAK G +  A + FD++ 
Sbjct: 322 DLHMGTQLHALIAKSG------------IHADLTASNSLLSMYAKAGLINEATMFFDEIA 369

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KD + +  ++ G  Q+G A EA ++F++M A  +EP+  T V+++ AC  + AL+ G+ 
Sbjct: 370 VKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKC 429

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
            H  +   R + +   +  +LI+MY+KCG +  +R VFD++  +DVV WN+MI GY +HG
Sbjct: 430 SHGSVI-IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
            GK+A  LF  M      P D+TFI L++AC+H+GLV EG+ +F+TM  +Y I P++EHY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
            CMV+LL+R G ++EAY+ +  M ++ D  +WG LLGACR+H NI LG++++  +     
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608

Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
             +G +VLLSNI++A G +D  A VR + K KG +K PG S IE++  +H F+ GD  HP
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHP 668

Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
            S++IY  L+ I   +K  GY   T  VL D+ E++K+ +L  HSEKLA+AFG++S    
Sbjct: 669 CSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNED 728

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I + KNLRVC DCH   K ++    R I++RD NRFHHF NG CSCG++W
Sbjct: 729 KTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 172/388 (44%), Gaps = 61/388 (15%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K++    L   ++LVDL  R G  + A    A +     VS T ++  Y +      AR 
Sbjct: 100 KYTFPFVLKACSALVDL--RAGRTIHAHAAAAGLHTDLFVS-TALIDLYIRCARFGPARN 156

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIG 121
           +F  M  +DVV WN M+ GYA HG+ + A+     M     + PN  T V++L    Q G
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216

Query: 122 ALESGRWIHSYIENS--RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           AL  G  IH+Y   +     +  V +GTAL++MY+KC  L  A  VF  +  ++ V W++
Sbjct: 217 ALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSA 276

Query: 180 MIVGYAMHGFGKDALQLFNEM--------------CRIRLKPS----------------- 208
           +I G+ +     +A  LF +M                +R+  S                 
Sbjct: 277 LIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS 336

Query: 209 ----DITFI-GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
               D+T    LLS  A AGL+NE   FF    DE A++  +  YG +++   + G+ EE
Sbjct: 337 GIHADLTASNSLLSMYAKAGLINEATMFF----DEIAVKDTIS-YGALLSGCVQNGKAEE 391

Query: 264 AYKLVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYL-ISQNLANSGTY 314
           A+ +   M+   +EPD     +L+ AC       HG  + G  I   L +  ++ NS   
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNS--- 448

Query: 315 VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             L ++YA  G  D   +V   M  + V
Sbjct: 449 --LIDMYAKCGKIDLSRQVFDKMPARDV 474



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 120/246 (48%), Gaps = 15/246 (6%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
           L  +  +G++A AR +FD +   D   +N +I  Y+  G  + A+ L+R ML  +V PN+
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
            T   VL AC  +  L +GR I      +  +  ++ V TALI++Y +C     AR VF 
Sbjct: 101 YTFPFVLKACSALVDLRAGRTI-HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           ++  +DVV WN+M+ GYA HG    A+  L +      L+P+  T + LL   A  G + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 227 EGRRFFNTMKDEYAIEPKVEHY-------GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +G     T    Y +   +E           ++++ ++  Q+  A ++   M +  D V 
Sbjct: 220 QG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-VT 273

Query: 280 WGTLLG 285
           W  L+G
Sbjct: 274 WSALIG 279


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/479 (40%), Positives = 293/479 (61%), Gaps = 5/479 (1%)

Query: 6    LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
             D D+YV TSL+D+Y +   + SA+ +F  M  R++ +  ++++ Y+ +G    A  L +
Sbjct: 656  FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 715

Query: 66   DMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             ME++    D+V WN MI GYA  G   EAL  F +M  E V PN  +   +L AC  + 
Sbjct: 716  QMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLS 775

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             L+ G+ IH     +  I+ +V V TALI+MYSK  SLK+A  VF R+ +K +  WN MI
Sbjct: 776  LLQKGKEIHCLSIRNGFIE-DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 834

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            +G+A+ G GK+A+ +FNEM ++ + P  ITF  LLSAC ++GL+ EG ++F++M  +Y I
Sbjct: 835  MGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRI 894

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P++EHY CMV+LL RAG ++EA+ L+  M ++PD+ +WG LLG+CR+H N+   E  A+
Sbjct: 895  VPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAK 954

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L      NS  Y+L+ N+Y+    W+ +  +R LM   GV+     S I+++ +VH F 
Sbjct: 955  NLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFS 1014

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            + +  HP + +IY  L ++   +K  GYVP    V  ++ E +KQ  L  H+EKLA+ +G
Sbjct: 1015 SDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYG 1074

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI  + G  I+++KN R+C DCH+  K IS    R++ +RD  RFHHF  G CSC D+W
Sbjct: 1075 LIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 34/252 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D+Y+  +L++ Y R   +  A ++F  MP                        
Sbjct: 550 IKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPN----------------------- 586

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-GQI 120
                    + + WN  I    Q     + + LFR+M    ++    T V VL A   ++
Sbjct: 587 --------PEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISEL 638

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G L  G+  H Y+  +     +V VGT+LI+MY K  SL  A+ VFD + ++++  WNS+
Sbjct: 639 GFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 697

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           + GY+  G  +DAL+L N+M +  +KP  +T+ G++S  A  G   E   FF  M+ E  
Sbjct: 698 VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-G 756

Query: 241 IEPKVEHYGCMV 252
           + P      C++
Sbjct: 757 VMPNSASITCLL 768



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 48/287 (16%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY-AQHGLANEALVLFRRMLAEKVE 104
            +++ Y   G+  +A ++F     ++ + WN  ++ + +  G  +  L +F+ +  + V 
Sbjct: 461 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 520

Query: 105 -PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +EV +VA L  C ++  +  G  IH  +   R   ++V +  AL+N Y +C  L+ A 
Sbjct: 521 FDSEVYSVA-LKTCTRVMDIWLGMEIHGCL-IKRGFDLDVYLRCALMNFYGRCWGLEKAN 578

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHA 222
            VF  + + + ++WN  I+        +  ++LF +M    LK    T + +L A  +  
Sbjct: 579 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISEL 638

Query: 223 GLVNEGRR-----------------------------------FFNTMKDEYAIEPKVEH 247
           G +N G+                                     F+ MK+       +  
Sbjct: 639 GFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNR-----NIFA 693

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHG 291
           +  +V+  S  G  E+A +L+  M+   I+PD V W  ++    + G
Sbjct: 694 WNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG 740


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 290/489 (59%), Gaps = 39/489 (7%)

Query: 19  LYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG----------------------- 55
           +YAR G    A ++F  M  R +VS   M++ +A  G                       
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 56  ---------------EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
                          ++A  + +FD+M    ++ WN M+  Y  + +  EA+ LF RM  
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQK 120

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + +EP+ VT   VL +CG++ AL  G+ IH  I+  R +  ++ +  AL++MY+ CG LK
Sbjct: 121 DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKR-RRMCSSMLLENALMDMYANCGCLK 179

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +AR VFD +  +DVV W S+I  Y  HG G++A+ LF +MC   L+P  I F+ +L+AC+
Sbjct: 180 EARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACS 239

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           HAGL++ G+ +F +M  E+ I PK+EHY CMV+LL RAG + EAY  +M M I+P+  +W
Sbjct: 240 HAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVW 299

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGACR+H N+ +G   A+ L+      +G YVLLSNIYA  G W  V+ VR++M+ K
Sbjct: 300 GALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESK 359

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G++K PG S+ EL + VH F  GD  HP+SK IY  L E+   ++  GY P+ +  LHD+
Sbjct: 360 GIKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDV 419

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E+ K+  L VHSEKLA+AF LI+T PGT I+I  NLR C DCH   KLIS   GR+I++
Sbjct: 420 EEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIIL 479

Query: 461 RDRNRFHHF 469
           +D NR H+ 
Sbjct: 480 KDVNRIHYM 488



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 90/209 (43%), Gaps = 34/209 (16%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           + +  +L+D+YA  G +  A  +F +M  R +VS T++++ Y +                
Sbjct: 162 MLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR---------------- 205

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                          HG   EA+ LF +M  + +EP+ +  VA+L+AC   G L+ G+  
Sbjct: 206 ---------------HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY 250

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
              + +  +I   ++    ++++  + G +++A   +       +  VW +++    +H 
Sbjct: 251 FYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHS 310

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
                L   + +  +RL P    +  LLS
Sbjct: 311 NMDIGLLAADSL--LRLAPKQTGYYVLLS 337


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/432 (43%), Positives = 278/432 (64%), Gaps = 1/432 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  YAK   +  A V F+ +  +D+  W V+I  YAQ     +AL  FR+M  E V+
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T    LS C  + +LE G+ +HS +  S ++  ++ VG+AL++MY+KCG +++A  
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVS-DMFVGSALVDMYAKCGCMEEAEA 673

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ +  +D + WN++I GYA +G G  AL  F  M    + P  +TF G+LSAC+H GL
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGL 733

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG+  FN+M  ++ I P V+H  CMV++L R G+ +E    +  M++  ++++W T+L
Sbjct: 734 VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GA ++H N+ LGEK A  L         +Y+LLSNI+A  G WD V RVR+LM  KGV+K
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS +E + +VH F++ D  HP+ +EI++ L+E++  L +  YVP+T+ VLH++GE +
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSE+LA+ F LIST     I+I KNLR+C DCH V K IS  T ++I++RD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 465 RFHHFVNGTCSC 476
           RFHHF NG CSC
Sbjct: 974 RFHHFKNGACSC 985



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 119/242 (49%), Gaps = 3/242 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YAK GE+  A  +F  M E++ V WNV+++GYAQ G     L LF  M+   V+
Sbjct: 252 SALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVK 311

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NE T   VL  C     L+ G+ IHS I      + N  +G  L++MYSKCG   DA  
Sbjct: 312 CNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC-GYEGNEFIGCGLVDMYSKCGLAIDAIG 370

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +   D+VVW+++I      G  +++++LF+ M      P+  T   LLSA  + G 
Sbjct: 371 VFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGN 430

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G+     +  +Y  E  V     +V +  + G V +  KL   M ++ D + W   L
Sbjct: 431 LQYGQSIHACVW-KYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYL 488

Query: 285 GA 286
             
Sbjct: 489 SG 490



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YAK    A AR++   M ++DVV W  +I G    G AN+++ LF+ M  E + P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE T    L AC    AL+ G+ +H+       + +++ VG+AL+++Y+KCG ++ A  +
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQ-AFKLGLLLDLFVGSALVDLYAKCGEIELASKM 270

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  + +++ V WN ++ GYA  G     L+LF  M  + +K ++ T   +L  CA++  +
Sbjct: 271 FIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNL 330

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G +  +++  +   E   E  GC +V++ S+ G   +A  +   +K +PD V+W  L+
Sbjct: 331 KQG-QVIHSLIIKCGYEGN-EFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 40/254 (15%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYA-----KQGEVAAARVL--- 63
           L++ YA+ GDV    KLF +M +  +     +LTT+L   A     KQG+V  + ++   
Sbjct: 285 LLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCG 344

Query: 64  ---------------------------FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
                                      F  +++ D+V W+ +I    Q G + E++ LF 
Sbjct: 345 YEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH 404

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            M      PN+ T  ++LSA    G L+ G+ IH+ +      + +V V  AL+ MY K 
Sbjct: 405 LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKN 463

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G + D   +++ + D+D++ WN+ + G    G     L +F  M      P+  TFI +L
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISIL 523

Query: 217 SACAHAGLVNEGRR 230
            +C+    V+ GR+
Sbjct: 524 GSCSCLFDVHYGRQ 537



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 32/180 (17%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D++V ++LVD+YA+ G +  AE LF  + +R  ++  T                      
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNT---------------------- 688

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
              ++C      GYAQ+G  N+AL  FR ML E + P+ VT   +LSAC   G +E G+ 
Sbjct: 689 ---IIC------GYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE 739

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
             + +     I   V     ++++  + G   +      ++   ++ ++W +++    MH
Sbjct: 740 HFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMH 799


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/530 (39%), Positives = 313/530 (59%), Gaps = 53/530 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K S ++ +  S +L+D+Y++ GD+  A ++F  M +R++VS T+M+  Y + G    A 
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 62  VLFDDMEE--------------------------KDV--------------VCWNVMIDG 81
            L   ME+                          KDV              VC N ++D 
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC-NALMDM 396

Query: 82  YAQHGLANEALVLFRRMLAEKV----------EPNEVTAVAVLSACGQIGALESGRWIHS 131
           YA+ G    A  +F  M+ + +          +P+  T   VL AC  + ALE G+ IH 
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHG 456

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI  +     +  V  AL+++Y KCG L  ARL+FD +  KD+V W  MI GY MHG+G 
Sbjct: 457 YILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+  FNEM    ++P +++FI +L AC+H+GL+ +G RFF  MK+++ IEPK+EHY CM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LLSR G + +AY+ +  + I PD+ +WG LL  CR + +I L EK+AE +      NS
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENS 635

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLRHPKS 370
           G YVLL+NIYA    W+ V R+R  + ++G++K PGCS IE+  KV+ F++G +  HP S
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHS 695

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
           K I  +L+++   +K EG+ P+T+  L +  E QK+ +L  HSEKLA+AFGL++  P  +
Sbjct: 696 KNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I++ KNLRVC DCH + K +SK T R+I++RD NRFHHF +G CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 154/302 (50%), Gaps = 25/302 (8%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA------ 58
           S+  D  +   LV  YA  GD+    ++F TM ++++     M++ YAK G+        
Sbjct: 129 SVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLF 188

Query: 59  --------------AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
                         +A  LFD + ++DV+ WN MI GY  +GL    L ++++M+   ++
Sbjct: 189 KIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            +  T ++VL  C   G L  G+ +HS  I++S   ++N      L++MYSKCG L  A 
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS--NTLLDMYSKCGDLDGAL 306

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+++ +++VV W SMI GY   G    A++L  +M +  +K   +    +L ACA +G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+   + +K    +E  +     ++++ ++ G +E A  +   M ++ D + W T+
Sbjct: 367 SLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTM 424

Query: 284 LG 285
           +G
Sbjct: 425 IG 426



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 147/360 (40%), Gaps = 90/360 (25%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +  V  +N  I  + Q G    A+ L    + +K E    T  +VL  C  + +   G+ 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELI--CMCKKSELETKTYSSVLQLCAGLKSFTDGKK 120

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV----------------------- 165
           +HS I+ S ++ V+  +G  L++ Y+ CG LK+ R V                       
Sbjct: 121 VHSIIK-SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 166 ----------------------------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
                                       FD++ D+DV+ WNSMI GY  +G  +  L ++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYAI- 241
            +M  + +     T I +L  CA++G ++ G+                F NT+ D Y+  
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 242 --------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLL 284
                         E  V  +  M+   +R G+ + A KL+  M+   ++ D V   ++L
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSIL 359

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC   G++  G+ + +Y+ + N+  S  +V   L ++YA  G+ +    V + M  K +
Sbjct: 360 HACARSGSLDNGKDVHDYIKANNM-ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/436 (44%), Positives = 277/436 (63%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K GEV  AR +FD ++ ++VV W  ++  Y Q+G   E+L LF  M  E   
Sbjct: 260 SMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTL 319

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   +L+AC  I AL  G  +H+ +E     K +V V  ALINMYSK GS+  +  
Sbjct: 320 PNEYTFAVLLNACAGIAALRHGDLLHARVE-KLGFKNHVIVRNALINMYSKSGSIDSSYN 378

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +  +D++ WN+MI GY+ HG GK ALQ+F +M      P+ +TFIG+LSA +H GL
Sbjct: 379 VFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGL 438

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG  + N +   + IEP +EHY CMV LLSRAG ++EA   +   +++ D V W TLL
Sbjct: 439 VKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLL 498

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            AC +H N  LG +IAE ++  +  + GTY LLSN+YA    WDGV  +R LM+E+ ++K
Sbjct: 499 NACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKK 558

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S +++ N +H FL+    HP+S +IY  ++++   +K  GYVP    VLHD+ ++Q
Sbjct: 559 EPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQ 618

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+A+GL+       I+I+KNLR+C DCH   KLISK T R I++RD N
Sbjct: 619 KEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDAN 678

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+C+C D+W
Sbjct: 679 RFHHFRDGSCTCLDHW 694



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 168/347 (48%), Gaps = 35/347 (10%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KF L    YV ++LV +Y+R   V  A ++  T+P                 GE      
Sbjct: 145 KFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVP-----------------GE------ 181

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                   D+  +N +++   + G   EA+ + RRM+ E V  + VT V V+  C QI  
Sbjct: 182 -----HVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRD 236

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L+ G  +H+ +     +  +  VG+ LI+MY KCG + +AR VFD + +++VVVW +++ 
Sbjct: 237 LQLGLRVHARLLRG-GLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMT 295

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  +G+ +++L LF  M R    P++ TF  LL+ACA    +  G    +   ++   +
Sbjct: 296 AYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLGFK 354

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             V     ++N+ S++G ++ +Y +  DM I  D + W  ++     HG      ++ + 
Sbjct: 355 NHVIVRNALINMYSKSGSIDSSYNVFTDM-IYRDIITWNAMICGYSHHGLGKQALQVFQD 413

Query: 303 LIS-QNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKEKGVQKEPG 347
           ++S +   N  T++ + + Y+ +G   +G   +  LM+   +  EPG
Sbjct: 414 MVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKI--EPG 458



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 145/320 (45%), Gaps = 32/320 (10%)

Query: 24  GDVLSAEKLF--ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           G  + A+ L    T     +  L +++  Y K G++  AR LFD M  ++VV WNV++ G
Sbjct: 31  GKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAG 90

Query: 82  YAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK 140
           Y   G   E LVLF+ M++ +   PNE      LSAC   G ++ G   H  +     + 
Sbjct: 91  YLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKF-GLV 149

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLF 197
            +  V +AL++MYS+C  ++ A  V D V  +   D+  +NS++      G G++A+++ 
Sbjct: 150 CHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVL 209

Query: 198 NEMCRIRLKPSDITFIGLLSACA-----------HAGLVNEGRRFFNTMKDEYAIEPKVE 246
             M    +    +T++G++  CA           HA L+  G  F     DE+     ++
Sbjct: 210 RRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMF-----DEFVGSMLID 264

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            YG       + G+V  A + V D     + V+W  L+ A   +G       +   +  +
Sbjct: 265 MYG-------KCGEVLNA-RNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDRE 316

Query: 307 -NLANSGTYVLLSNIYAAIG 325
             L N  T+ +L N  A I 
Sbjct: 317 GTLPNEYTFAVLLNACAGIA 336



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHS--YIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           P+      +L  C  +  L  G+ +H+   I N  +   ++    +L+++Y KCG L  A
Sbjct: 10  PSLEELGKLLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLA 69

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITFIGLLSACAH 221
           R +FD +  ++VV WN ++ GY   G   + L LF  M  ++   P++  F   LSAC+H
Sbjct: 70  RNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSH 129

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            G V EG +    +  ++ +         +V++ SR   VE A +++
Sbjct: 130 GGRVKEGMQCHGLLF-KFGLVCHQYVKSALVHMYSRCSHVELALQVL 175


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/481 (41%), Positives = 295/481 (61%), Gaps = 36/481 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  LD D++V +SL+D                                Y K G++   
Sbjct: 194 TVKAGLDSDVFVRSSLID-------------------------------AYVKLGDLDGG 222

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +FD+M  +D+V WN +I G+AQ G    A+ LF RM       N+ T  +VL AC  +
Sbjct: 223 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGM 282

Query: 121 GALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             LE+GR +H+++ +  R++ ++     AL++MY KCGSL+DA  +F R+  +DV+ W++
Sbjct: 283 VMLEAGRQVHAHVLKYDRDLILH----NALLDMYCKCGSLEDADALFHRMPQRDVISWST 338

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           M+ G A +G   +AL++F+ M    + P+ +T +G+L AC+HAGLV +G  +F +MK  +
Sbjct: 339 MVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLF 398

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P+ EH+ CMV+LL RAG+++EA + +  M +EPDSV+W TLLGACR+H N +L    
Sbjct: 399 GIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYA 458

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A  ++     + G  VLLSN YA +  W    +    M+++G++KEPG S IEL  +VH 
Sbjct: 459 AREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHV 518

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGDL HP S  I   L  + G +K+ GYVPQT+ VL D+  +QK++ L+ HSEK+A+ 
Sbjct: 519 FIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIV 578

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG +    G  I+I+KNLR+C DCHA  KL+SK  GR I++RD  RFHHF +G CSCGDY
Sbjct: 579 FGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDY 638

Query: 480 W 480
           W
Sbjct: 639 W 639



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 143/304 (47%), Gaps = 13/304 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEKVE 104
           ++ + YAK G +  A  +FD M  ++VV W  ++   A   G   EAL     M  + V 
Sbjct: 109 SLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVA 168

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  +VL AC   G L +   +H+    +  +  +V V ++LI+ Y K G L   R 
Sbjct: 169 PNAYTFSSVLGACTTPGMLTA---VHASTVKA-GLDSDVFVRSSLIDAYVKLGDLDGGRR 224

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +D+VVWNS+I G+A  G G  A++LF  M       +  T   +L AC    +
Sbjct: 225 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVM 284

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  GR+    +      +  +  +  ++++  + G +E+A  L   M  + D + W T++
Sbjct: 285 LEAGRQVHAHV---LKYDRDLILHNALLDMYCKCGSLEDADALFHRMP-QRDVISWSTMV 340

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTY---VLLSNIYAAIGNWDGVARVRTLMKEKG 341
                +G      ++ + + SQ +A +      VL +  +A +   DG    R++ +  G
Sbjct: 341 SGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVE-DGWHYFRSMKRLFG 399

Query: 342 VQKE 345
           +Q E
Sbjct: 400 IQPE 403


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/445 (42%), Positives = 280/445 (62%), Gaps = 6/445 (1%)

Query: 38  QRSLVSLTTMLTCYAK-QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
           +  LV    +L  Y K    +  AR +F+ +  +DV+ WN++I  Y Q+G A +AL +F+
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFK 355

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           +M  E V PNE+T   VLSAC  +GA   G+ +H+ I + R  K +V +  +L+NMY++C
Sbjct: 356 QMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGR-CKADVVLENSLMNMYNRC 414

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           GSL D   VF  + DK +V W+++I  YA HG  +  L+ F E+ +  L   D+T +  L
Sbjct: 415 GSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTL 474

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           SAC+H G++ EG + F +M  ++ + P   H+ CMV+LLSRAG++E A  L+ DM   PD
Sbjct: 475 SACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPD 534

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           +V W +LL  C+LH +     ++A+ L   ++     T  LLSN+YA  G WD V + R 
Sbjct: 535 AVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN 594

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
               +  +K PGCS IE+++ VHEF+AGD  HP+ + I   ++ ++  +K  GYVP  ++
Sbjct: 595 ---RRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRM 651

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VLH++ E++K+  L  HSEKLA+A+GLIST PGT + IVKNLR C DCHA  K IS+  G
Sbjct: 652 VLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVG 711

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           RKI++RD  RFHHF NG+CSC DYW
Sbjct: 712 RKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 171/315 (54%), Gaps = 9/315 (2%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V +S  DL  + G +L A  L   + +  ++  T ++T YA+  ++  AR  FD+M +K 
Sbjct: 67  VCSSSKDL--KQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVEPNEVTAVAVLSACGQIGALESGRW 128
           +V WN +I GY+++G    AL +++ M++   E ++P+ +T  + L AC  +G +  GR 
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           I +    S     ++ V  ALINMYSKCGSL+ AR VFDR+ ++DV+ WN+MI GYA  G
Sbjct: 185 IEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQG 243

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
               AL+LF  M     KP+ +TFIGLL+AC +   + +GR     +K E+  E  +   
Sbjct: 244 AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVK-EHGYESDLVIG 302

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++N+ ++     E  + V +     D + W  L+ A   +G       I + +  +N+
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 309 ANSGTYVLLSNIYAA 323
           A +   + LSN+ +A
Sbjct: 363 APN--EITLSNVLSA 375



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 169/345 (48%), Gaps = 46/345 (13%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----------------------- 44
           K L    +L+  Y+R GD   A K++  M  +S   +                       
Sbjct: 123 KTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQG 182

Query: 45  -------------------TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
                                ++  Y+K G + +AR +FD ++ +DV+ WN MI GYA+ 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
           G A +AL LF+RM     +PN VT + +L+AC  +  LE GR IH  ++     + ++ +
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HGYESDLVI 301

Query: 146 GTALINMYSKC-GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           G  L+NMY+KC  SL++AR VF+R+  +DV+ WN +IV Y  +G  KDAL +F +M    
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           + P++IT   +LSACA  G   +G+   + +      +  V     ++N+ +R G +++ 
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGKA-VHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
             +   ++ +   V W TL+ A   HG+   G +    L+ + LA
Sbjct: 421 VGVFAAIR-DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLA 464



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 7/238 (2%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G VA A  +F  +E  + V W +++  +A++G   EAL  +RRM+ E + P+    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V  +  C     L+ G+ +H+ I  ++ ++ ++ +GTALI MY++C  L+ AR  FD + 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLVNE 227
            K +V WN++I GY+ +G  + AL+++ +M       +KP  ITF   L AC+  G +++
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 228 GRRF-FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           GR     T+   YA +  V++   ++N+ S+ G +E A K V D     D + W T++
Sbjct: 182 GREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARK-VFDRLKNRDVIAWNTMI 236



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 48/234 (20%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY KCGS+ DA  VF  +   + V W  ++  +A +G  ++AL  +  M    L+P    
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 212 FIGLLSACAHAGLVNEG------------------------------------RRFFNTM 235
           F+  +  C+ +  + +G                                    R+ F+ M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM------KIEPDSVLWGTLLGACRL 289
             +  +      +  ++   SR G    A K+  DM       ++PD++ + + L AC +
Sbjct: 121 GKKTLVT-----WNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSV 175

Query: 290 HGNIALGEKI-AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            G+I+ G +I A  + S   ++S     L N+Y+  G+ +   +V   +K + V
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/483 (39%), Positives = 302/483 (62%), Gaps = 5/483 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEV 57
           +K  +  D      L+ +  + GD+   ++L   + +     ++V   T++  YAK GE+
Sbjct: 467 MKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEM 526

Query: 58  AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
             +  +F++M+ +D++ WN +I         N  L +  RM  E V P+  T +++L  C
Sbjct: 527 GDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVC 586

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + A   G+ IH  I     ++ +V VG  LI MYSKCGSL+++  VF  +  KDVV W
Sbjct: 587 SLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTW 645

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            ++I    M+G GK A++ F EM    + P  + F+ ++ AC+H+GLV EG  +F+ MK 
Sbjct: 646 TALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKK 705

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           +Y IEP++EHY C+V+LLSR+  +++A   ++ M ++PDS +WG LL ACR+ G+  + +
Sbjct: 706 DYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQ 765

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           +++E +I  N  ++G YVL+SN+YAA+G WD V  +R  +K +G++K+PGCS +E+ NKV
Sbjct: 766 RVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 825

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           + F  G     + +E+  +L  + G +  EGY+   Q VLHDI E +K++ L  HSE+LA
Sbjct: 826 YVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLA 885

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL++T+PGT ++++KNLRVC DCH V K ISK   R++++RD NRFH F +G CSCG
Sbjct: 886 IAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCG 945

Query: 478 DYW 480
           DYW
Sbjct: 946 DYW 948



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 157/318 (49%), Gaps = 35/318 (11%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           DLY+  +L+D+Y R  D+                                 AR +F++M 
Sbjct: 208 DLYIGNALIDMYCRFNDL-------------------------------DKARKVFEEMP 236

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            +DVV WN +I GY  +G  NEAL ++ R     V P+  T  +VL ACG +G++E G  
Sbjct: 237 LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDI 296

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           IH  IE    IK +V V   L++MY K   L D R +FD++  +D V WN+MI GY+  G
Sbjct: 297 IHGLIEKI-GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 355

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             +++++LF EM   + KP  +T   +L AC H G +  G+   + M      E      
Sbjct: 356 LYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTAS 413

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             ++N+ ++ G +  + ++   MK + DSV W +++     +G+     K+ + + +   
Sbjct: 414 NILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 472

Query: 309 ANSGTYVLLSNIYAAIGN 326
            +S TYV+L ++   +G+
Sbjct: 473 PDSVTYVMLLSMSTQLGD 490



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 145/297 (48%), Gaps = 36/297 (12%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  + KD+ V+  L+ +Y +   ++   ++F  M  R  VS  TM+              
Sbjct: 303 KIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC------------- 349

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                             GY+Q GL  E++ LF  M+  + +P+ +T  ++L ACG +G 
Sbjct: 350 ------------------GYSQVGLYEESIKLFMEMV-NQFKPDLLTITSILQACGHLGD 390

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           LE G+++H Y+  S   + +      LINMY+KCG+L  ++ VF  +  KD V WNSMI 
Sbjct: 391 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 449

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  +G   +A++LF +M +  +KP  +T++ LLS     G +  G+     +  +    
Sbjct: 450 VYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLA-KMGFN 507

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
             +     +V++ ++ G++ ++ K+  +MK   D + W T++ +C    +  LG ++
Sbjct: 508 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLGLRM 563



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 140/308 (45%), Gaps = 44/308 (14%)

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +V  WN +I     +GL +EAL L+      +++P+  T  +V++AC  +   E  + IH
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             +        ++ +G ALI+MY +   L  AR VF+ +  +DVV WNS+I GY  +G+ 
Sbjct: 198 DRVL-XMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 256

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE----------------------- 227
            +AL+++     + + P   T   +L AC   G V E                       
Sbjct: 257 NEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGL 316

Query: 228 ------------GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KI 273
                       GRR F+ M    A+      +  M+   S+ G  EE+ KL M+M  + 
Sbjct: 317 LSMYCKFNGLIDGRRIFDKMVLRDAVS-----WNTMICGYSQVGLYEESIKLFMEMVNQF 371

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVAR 332
           +PD +   ++L AC   G++  G+ + +Y+I+     ++    +L N+YA  GN      
Sbjct: 372 KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQE 431

Query: 333 VRTLMKEK 340
           V + MK K
Sbjct: 432 VFSGMKCK 439


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/438 (44%), Positives = 287/438 (65%), Gaps = 4/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
            +++  Y K G++  +  +F+ M+ +DV  W+ +I  +A  G+ +E L +F  M  E   
Sbjct: 124 NSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSC 183

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK-VNVQVGTALINMYSKCGSLKDA 162
            P E   V+VLSAC  +GAL+ GR  H  +   RNI+ +NV V T+LI+MY KCG ++  
Sbjct: 184 RPEESILVSVLSACTHLGALDLGRCTH--VTLLRNIREMNVIVQTSLIDMYVKCGCIEKG 241

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +F R+  K+ + ++ MI G AMHG G +ALQ+F++M    LKP D+ ++G+LSAC HA
Sbjct: 242 LSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHA 301

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV+EG + FN MK E+ IEP ++HYGC+V+L+ RAG + +A + +  M I+P+ V+W  
Sbjct: 302 GLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRG 361

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC+ H N+ +GE  A+ L   N +N G YV+LSN+YA    W+ VA++RT M  KG 
Sbjct: 362 LLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGF 421

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            + PG S +++  K+++F++ D+ HP+ K +Y M+ ++   LK EGY P T  VL D+ E
Sbjct: 422 TQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDE 481

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+  L+ HS+KLA+AF LI T  G  I+I +NLR+C DCH   KLIS    R+I +RD
Sbjct: 482 EEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRD 541

Query: 463 RNRFHHFVNGTCSCGDYW 480
           RNRFHHF +GTCSC DYW
Sbjct: 542 RNRFHHFKDGTCSCRDYW 559



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 36/294 (12%)

Query: 38  QRSLVSLTTMLTC-YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
           + S  +   + TC  +  G +  A  +F  +++     +N MI GY        AL L+ 
Sbjct: 15  ENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYY 74

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            ML   VE +  T  A+  AC  + ++E G  IH YI   R ++ ++ V  +LINMY KC
Sbjct: 75  EMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYI-FKRGLEGDLFVQNSLINMYGKC 133

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGL 215
           G ++ +  VF+ ++ +DV  W+++I  +A  G   + L +F EM R    +P +   + +
Sbjct: 134 GKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSV 193

Query: 216 LSACAHAGLVNEGR----------RFFNTMKDEYAIEPKVE------------------- 246
           LSAC H G ++ GR          R  N +     I+  V+                   
Sbjct: 194 LSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQ 253

Query: 247 -HYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALG 296
             Y  M+  L+  G+  EA ++  DM    ++PD V++  +L AC   G +  G
Sbjct: 254 LSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEG 307



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 36/240 (15%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L   + + +++  T+++  Y K G +     LF  M +K+ + ++VMI G A HG   EA
Sbjct: 213 LLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEA 272

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           L +F  ML E ++P++V  + VLSAC   G ++ G    + ++    I+  +Q    +++
Sbjct: 273 LQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVH 332

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           +  + G L  A                                     +  + +KP+++ 
Sbjct: 333 LMGRAGMLNKA----------------------------------LEHIRSMPIKPNEVV 358

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           + GLLSAC     +  G     ++ +  +  P    Y  + N+ +RA + E+  K+  +M
Sbjct: 359 WRGLLSACKFHHNLEIGEIAAKSLGELNSSNPG--DYVVLSNMYARAKRWEDVAKIRTEM 416


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 295/463 (63%), Gaps = 13/463 (2%)

Query: 31  KLFATMPQRSLVSLTTMLTC----YAKQGEVAA--ARVLFDDMEE--KDVVCWNVMIDGY 82
           +L A   +  L + T++  C    YA+ G   A  AR +F++M    +D+V WN +I  +
Sbjct: 184 QLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAH 243

Query: 83  AQHGLANEALVLFRRMLAEK---VEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RN 138
           AQ+GLA EA+ L+RRM   +   VEP+ VT V VLS+C   GA   G  +  Y+ ++   
Sbjct: 244 AQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRDTIPG 303

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
            + N+ +  ALIN +++CGSL  A+ +FD + ++ VV W ++I+GY MHG G  A+ LF 
Sbjct: 304 FRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFE 363

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
            M      P  +  +GLLSAC+HAG+ +EGR++F+TM+ +Y + PK+EHY CMV+LL RA
Sbjct: 364 TMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRA 423

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318
           G+++EA +L+  M +  D  +WG LLGAC++H N+ +GE+  E ++S   AN G YVL++
Sbjct: 424 GRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMA 483

Query: 319 NIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLE 378
           NIYA  G  DGVA+VR  M+ +G++KEPGCS +E   KVH F+A D  HP+++ IY ++ 
Sbjct: 484 NIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVV 543

Query: 379 EINGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNL 437
           E+   +K + G     +     + E      +  HSEKLAVAFGL++T+ G+ I ++KNL
Sbjct: 544 ELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNL 603

Query: 438 RVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           RVC DCH+  K IS+ T R  ++RD +RFH F NG CSC DYW
Sbjct: 604 RVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 21/265 (7%)

Query: 60  ARVLFDDMEEKDV------VCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVA 112
           AR L D++             +N +I G A HG+      LFRRM +A  V  + VT +A
Sbjct: 113 ARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLA 172

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK--CGSLKDARLVFDRVN 170
           ++     +  L     +H+    S  +  N  V   L+++Y++   G    AR VF+ + 
Sbjct: 173 LVP----VAPLGIVPQLHALAARS-GLAANTSVANCLVSVYARGGGGGASLARQVFEEMP 227

Query: 171 --DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLV 225
              +D+V WN++I  +A +G   +A++L+  M       ++P  +T +G+LS+CAH G  
Sbjct: 228 RASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGAR 287

Query: 226 NEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             G      ++D        +     ++N  +R G + +A +L  +M  E   V W TL+
Sbjct: 288 RVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMP-ERSVVSWTTLI 346

Query: 285 GACRLHGNIALGEKIAEYLISQNLA 309
               +HG   +   + E ++S+  A
Sbjct: 347 IGYGMHGQGDIAVDLFETMVSEATA 371



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L +  +L++ +AR G +  A++LF  MP+RS+VS TT                      
Sbjct: 307 NLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTT---------------------- 344

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                    +I GY  HG  + A+ LF  M++E   P+ V  V +LSAC   G  + GR 
Sbjct: 345 ---------LIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRK 395

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             S +E    ++  ++  T ++++  + G L +AR L+       D  VW +++    +H
Sbjct: 396 YFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIH 455

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              +   + F  +  + L+P+++ +  L++
Sbjct: 456 KNVEMGEEAFERV--VSLEPANVGYYVLMA 483


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/463 (42%), Positives = 295/463 (63%), Gaps = 13/463 (2%)

Query: 31  KLFATMPQRSLVSLTTMLTC----YAKQGEVAA--ARVLFDDMEE--KDVVCWNVMIDGY 82
           +L A   +  L + T++  C    YA+ G   A  AR +F++M    +D+V WN +I  +
Sbjct: 184 QLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVISAH 243

Query: 83  AQHGLANEALVLFRRMLAEK---VEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RN 138
           AQ+GLA EA+ L+RRM   +   VEP+ VT V VLS+C   GA   G  +  Y+ ++   
Sbjct: 244 AQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVEQYVRDTIPG 303

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
            + N+ +  ALIN +++CGSL  A+ +FD + ++ VV W ++I+GY MHG G  A+ LF 
Sbjct: 304 FRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFE 363

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
            M      P  +  +GLLSAC+HAG+ +EGR++F+TM+ +Y + PK+EHY CMV+LL RA
Sbjct: 364 TMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRA 423

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318
           G+++EA +L+  M +  D  +WG LLGAC++H N+ +GE+  E ++S   AN G YVL++
Sbjct: 424 GRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMA 483

Query: 319 NIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLE 378
           NIYA  G  DGVA+VR  M+ +G++KEPGCS +E   KVH F+A D  HP+++ IY ++ 
Sbjct: 484 NIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVV 543

Query: 379 EINGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNL 437
           E+   +K + G     +     + E      +  HSEKLAVAFGL++T+ G+ I ++KNL
Sbjct: 544 ELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNL 603

Query: 438 RVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           RVC DCH+  K IS+ T R  ++RD +RFH F NG CSC DYW
Sbjct: 604 RVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 646



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 21/265 (7%)

Query: 60  ARVLFDDMEEKDV------VCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVA 112
           AR L D++             +N +I G A HG+      LFRRM +A  V  + VT +A
Sbjct: 113 ARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFDAVTLLA 172

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK--CGSLKDARLVFDRVN 170
           ++     +  L     +H+    S  +  N  V   L+++Y++   G    AR VF+ + 
Sbjct: 173 LVP----VAPLGIVPQLHALAARS-GLAANTSVANCLVSVYARGGGGGASLARQVFEEMP 227

Query: 171 --DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLV 225
              +D+V WN++I  +A +G   +A++L+  M       ++P  +T +G+LS+CAH G  
Sbjct: 228 RASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGAR 287

Query: 226 NEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             G      ++D        +     ++N  +R G + +A +L  +M  E   V W  L+
Sbjct: 288 RVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMP-ERSVVSWTALI 346

Query: 285 GACRLHGNIALGEKIAEYLISQNLA 309
               +HG   +   + E ++S+  A
Sbjct: 347 IGYGMHGQGDIAVDLFETMVSEATA 371



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L +  +L++ +AR G +  A++LF  MP+RS+VS T                       
Sbjct: 307 NLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTA---------------------- 344

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                    +I GY  HG  + A+ LF  M++E   P+ V  V +LSAC   G  + GR 
Sbjct: 345 ---------LIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRK 395

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             S +E    ++  ++  T ++++  + G L +AR L+       D  VW +++    +H
Sbjct: 396 YFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIH 455

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              +   + F  +  + L+P+++ +  L++
Sbjct: 456 KNVEMGEEAFERV--VSLEPANVGYYVLMA 483


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/485 (43%), Positives = 301/485 (62%), Gaps = 38/485 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D+Y++ SLV  YA                           TC      +  A+
Sbjct: 155 LKLGFDSDVYINNSLVHFYA---------------------------TC----DRLDFAK 183

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M E+ +V WNV+ID + + G  + AL LF  M  +  EP+  T  ++ +AC  +G
Sbjct: 184 GVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMG 242

Query: 122 ALESGRWIHSYIENSRNI-KVN-VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +L  G W H ++    +  +VN V + T+L++MY KCGSL+ A  +F R+  +DV  WNS
Sbjct: 243 SLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNS 302

Query: 180 MIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           MI+G++ HG    AL+ F  M R  +L P+ ITF+G+LSAC H GLV+EGRR+F+ M  E
Sbjct: 303 MILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTE 362

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA-CRLHGNIALGE 297
           Y I+P++EHYGC+V+LL+RAG ++EA  +V +M + PD V+W +LL A C+ +  + L E
Sbjct: 363 YKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSE 422

Query: 298 KIAEYLI-SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           ++A  ++ ++    SG YVLLS +YA+   W+ V  VR LM +KGV KEPGCSSIE+   
Sbjct: 423 EMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGV 482

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QTQIVLHDIGEKQKQNSLEVHSEK 415
            HEF AGD  HP+++EIY  L+ I   ++  GY P  +Q  + D     KQ SL +HSE+
Sbjct: 483 AHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSER 542

Query: 416 LAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCS 475
           LA+AFGL+ T+PG  I+I KNLRVC +CH V KLIS+   R+I++RDR RFHHF +G CS
Sbjct: 543 LAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACS 602

Query: 476 CGDYW 480
           C DYW
Sbjct: 603 CMDYW 607



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 7/236 (2%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQH-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
           +F  +E  +   WN +I   A+       A+ L+ RML +  V  ++ T   VL AC  +
Sbjct: 82  VFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYL 141

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            AL  G  IH+ I        +V +  +L++ Y+ C  L  A+ VFDR++++ +V WN +
Sbjct: 142 FALSEGEQIHAQILK-LGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVV 200

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG--RRFFNTMKDE 238
           I  +   G    AL LF EM +   +P   T   + +ACA  G ++ G     F   K +
Sbjct: 201 IDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFD 259

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
                 V     +V++  + G +E A +L   M  + D   W +++     HG +A
Sbjct: 260 ADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMP-KRDVTSWNSMILGFSTHGEVA 314


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 301/477 (63%), Gaps = 3/477 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
            DK  +V  SL+  Y   GDV +A K+F  M  + ++  T+++  Y++  ++ +A  +F 
Sbjct: 177 FDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFG 236

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
               KD+V W  M+ GYAQ+ +  +AL +F RM A  +  +EV+    +SAC Q+GA++ 
Sbjct: 237 QCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKR 296

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185
             W+    E +    +NV VG+ L++MY+KCG + +A  VFD + +K+V  ++SM+VG A
Sbjct: 297 AAWVQEIAEMN-GFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLA 355

Query: 186 MHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
            HG  ++A+ LF +M R   + P+ +TFIG+L+AC+HAG+V +GR +F  MKD+Y I P 
Sbjct: 356 SHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPS 415

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            +HY CMV+LL RAG V+EA  LV  M +EP   +WG LLGACR+HG   + +  AE+L 
Sbjct: 416 ADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLF 475

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK-VHEFLAG 363
                  G YVLLSN  AA G WD V++VR +M+ + ++K P  S  E  +  VH+F AG
Sbjct: 476 KLEPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAG 535

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           D  HP+++EI   L E+   LK  GYVP    +++D+  ++K+  L  HSEKLA+ FGL+
Sbjct: 536 DNSHPRTREIKKALLELVAKLKHAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLL 595

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +     +I+IVKNLR+C DCH   +L+S+F   +I++RD  RFHHF +G CSCG +W
Sbjct: 596 TLGSRCTIRIVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/485 (42%), Positives = 303/485 (62%), Gaps = 33/485 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK+  +KD YV  +L+D+Y+R G +  A  +F +M ++ +VS  TM+T Y   G    A 
Sbjct: 417 VKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDAL 476

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            L  DM+            G A+H +       +       ++PN VT + VL  C  + 
Sbjct: 477 NLLHDMQR-----------GQAEHRI--NTFDDYEDNKNFPLKPNSVTLMTVLPGCAALA 523

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G+ IH+Y    + +  +V VG+AL++MY+KCG L  +R VF++++ ++V+ WN +I
Sbjct: 524 ALGKGKEIHAYAV-KQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLI 582

Query: 182 VGYAMHGFGKDALQLFNEMCR-----IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           + Y MHG G++AL+LF  M         ++P+++T+I + ++ +H+G+V+EG   F TMK
Sbjct: 583 MAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMK 642

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHGNIAL 295
            ++ IEP  +HY C+V+LL R+GQ+EEAY L+  M      V  W +LLGAC++H N+ +
Sbjct: 643 AKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEI 702

Query: 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN 355
           GE  A+ L          +VL  N+         + R    MKEKGV+KEPGCS IE  +
Sbjct: 703 GEIAAKNL----------FVLDPNVLDYGTKQSMLGRK---MKEKGVRKEPGCSWIEHGD 749

Query: 356 KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEK 415
           +VH+FLAGD+ HP+SKE++  LE ++  +K EGYVP T  VLH++GE++K+  L  HSE+
Sbjct: 750 EVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSER 809

Query: 416 LAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCS 475
           LA+AFGL++T PGT+I++ KNLRVC DCH   K ISK   R+I++RD  RFHHF NGTCS
Sbjct: 810 LAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCS 869

Query: 476 CGDYW 480
           CGDYW
Sbjct: 870 CGDYW 874



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 7/241 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T YAK G V  A+ LFD  ++KD+V WN +I   +Q+    EAL+    ML   V PN
Sbjct: 227 LVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPN 286

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT  +VL AC  +  L  G+ IH+++  + ++  N  VG AL++MY  C   +  RLVF
Sbjct: 287 GVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVF 346

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACA--HAG 223
           D +  + + VWN+MI GY  + F  +A++LF EM   + L P+ +T   +L AC    + 
Sbjct: 347 DGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESF 406

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L  EG    ++   ++  E        ++++ SR G++E A  +   M    D V W T+
Sbjct: 407 LDKEG---IHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTM 462

Query: 284 L 284
           +
Sbjct: 463 I 463



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K G++ AAR +FD++  +D V WN MI+   +      A+ LFR ML E V P
Sbjct: 125 SLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGP 184

Query: 106 NEVTAVAVLSACGQ-IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
              T V+V  AC   I  L  G+ +H+++   RN         AL+ MY+K G + +A+ 
Sbjct: 185 TSFTLVSVAHACSNLINGLLLGKQVHAFV--LRNGDWRTFTNNALVTMYAKLGRVYEAKT 242

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD  +DKD+V WN++I   + +   ++AL   + M +  ++P+ +T   +L AC+H  +
Sbjct: 243 LFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEM 302

Query: 225 VNEGRRF--FNTMKDEYAIEPKVEHYGC-MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           +  G+    F  M ++      V   GC +V++     Q E+  +LV D        +W 
Sbjct: 303 LGCGKEIHAFVLMNNDLIENSFV---GCALVDMYCNCKQPEKG-RLVFDGMFRRTIAVWN 358

Query: 282 TLLGA 286
            ++  
Sbjct: 359 AMIAG 363



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 24/263 (9%)

Query: 48  LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPN 106
           + C  KQ E    R++FD M  + +  WN MI GY ++    EA+ LF  M+ E  + PN
Sbjct: 332 MYCNCKQPE--KGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPN 389

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT  +VL AC +  +      IHS +      + +  V  AL++MYS+ G ++ AR +F
Sbjct: 390 SVTLSSVLPACVRCESFLDKEGIHSCVV-KWGFEKDKYVQNALMDMYSRMGRIEIARSIF 448

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR------------------IRLKPS 208
             +N KD+V WN+MI GY + G   DAL L ++M R                    LKP+
Sbjct: 449 GSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPN 508

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
            +T + +L  CA    + +G+   +    +  +   V     +V++ ++ G +  +  + 
Sbjct: 509 SVTLMTVLPGCAALAALGKGKE-IHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVF 567

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
             M +  + + W  L+ A  +HG
Sbjct: 568 EQMSVR-NVITWNVLIMAYGMHG 589



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 31/212 (14%)

Query: 89  NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
           ++A+  +  M+   V P+     AVL A   I  L  G+ +H+++       +   V  +
Sbjct: 67  HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQ-ALPTAVPNS 125

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+NMY KCG +  AR VFD + ++D V WNSMI         + A+ LF  M    + P+
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 209 DITFIGLLSACA------------HAGLVNEG--RRFFNTMKDEYAIEPKVEHYGCMVNL 254
             T + +  AC+            HA ++  G  R F N                 +V +
Sbjct: 186 SFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNN---------------ALVTM 230

Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            ++ G+V EA K + D+  + D V W T++ +
Sbjct: 231 YAKLGRVYEA-KTLFDVFDDKDLVSWNTIISS 261


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/492 (40%), Positives = 309/492 (62%), Gaps = 17/492 (3%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  +   + V  +L+D+Y + G V   +++F  + ++S+VS T +L    K   +   
Sbjct: 137 AVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERG 196

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQ 119
           R +F +M E++ V W VM+ GY   G   E L L   M+       N VT  ++LSAC Q
Sbjct: 197 REVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQ 256

Query: 120 IGALESGRWIHSYI---------ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            G L  GRW+H Y          E S +   +V VGTAL++MY+KCG++  +  VF  + 
Sbjct: 257 SGNLVVGRWVHVYALKKEMMMGEEASYD---DVMVGTALVDMYAKCGNIDSSMNVFRLMR 313

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            ++VV WN++  G AMHG G+  + +F +M R  +KP D+TF  +LSAC+H+G+V+EG R
Sbjct: 314 KRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWR 372

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
            F++++  Y +EPKV+HY CMV+LL RAG +EEA  L+ +M + P+ V+ G+LLG+C +H
Sbjct: 373 CFHSLRF-YGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVH 431

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
           G + + E+I   LI  +  N+   +L+SN+Y A G  D    +R  ++++G++K PG SS
Sbjct: 432 GKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSS 491

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQ-IVLHDIGE-KQKQNS 408
           I +++ VH F +GD  HP++KEIY+ L E+   +++ GYVP    +V H  G+ ++K+ +
Sbjct: 492 IYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQA 551

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           L  HSEKLAV FGL+ T+P T + + KNLR+C DCH+  K++SK   R+I++RDRNRFH 
Sbjct: 552 LCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQ 611

Query: 469 FVNGTCSCGDYW 480
           F  G+CSC DYW
Sbjct: 612 FKGGSCSCSDYW 623



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 69/320 (21%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+S +L   YA  G++++A+KLF  +P                             + EK
Sbjct: 44  YLSNALFQFYASSGEMVTAQKLFDEIP-----------------------------LSEK 74

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D V W  ++  ++++GL   ++ LF  M  ++VE ++V+ V +   C ++  L   +  H
Sbjct: 75  DNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGH 134

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV---------------- 174
             +     +  +V+V  AL++MY KCG + + + +F+ + +K V                
Sbjct: 135 G-VAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGL 193

Query: 175 ---------------VVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSA 218
                          V W  M+ GY   GF ++ L+L  EM  R     + +T   +LSA
Sbjct: 194 ERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSA 253

Query: 219 CAHAGLVNEGRRFF------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           CA +G +  GR           M  E A    V     +V++ ++ G ++ +  +   M+
Sbjct: 254 CAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR 313

Query: 273 IEPDSVLWGTLLGACRLHGN 292
            + + V W  L     +HG 
Sbjct: 314 -KRNVVTWNALFSGLAMHGK 332



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 116/306 (37%), Gaps = 76/306 (24%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRV-- 169
           +L  C     L  G+ +H+ +  S   K     +  AL   Y+  G +  A+ +FD +  
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA--------- 220
           ++KD V W +++  ++ +G   ++++LF EM R R++  D++ + L   CA         
Sbjct: 72  SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 221 --------------------------HAGLVNEGRRFFNTMKDEYAI------------- 241
                                       GLV+E +R F  ++++  +             
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191

Query: 242 -------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP----DSVLWGTLL 284
                        E     +  MV     AG   E  +L+ +M        + V   ++L
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 285 GACRLHGNIALGEKIAEYLISQN--LANSGTY------VLLSNIYAAIGNWDGVARVRTL 336
            AC   GN+ +G  +  Y + +   +    +Y        L ++YA  GN D    V  L
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRL 311

Query: 337 MKEKGV 342
           M+++ V
Sbjct: 312 MRKRNV 317


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/492 (40%), Positives = 302/492 (61%), Gaps = 13/492 (2%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VKF   +   V   ++D Y + G V  A ++F  + + S+VS T +L    K   V + 
Sbjct: 139 VVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESG 198

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML---AEKVEPNEVTAVAVLSAC 117
           +V+FD+M E++ V W V+I GY   G   EA +L + M+         N +T  +VLSAC
Sbjct: 199 KVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSAC 258

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
            Q G +  GRW+H Y   +    + V VGT+L++MY+KCG +  A +VF  +  ++VV W
Sbjct: 259 SQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAW 318

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+M+ G AMHG GK  +++F  M    +KP  +TF+ LLS+C+H+GLV +G ++F+ ++ 
Sbjct: 319 NAMLCGLAMHGMGKVVVEMFACMVE-EVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLER 377

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            Y I P++EHY CMV+LL RAG++EEA  LV  + I P+ V+ G+LLGAC  HG + LGE
Sbjct: 378 AYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGE 437

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           KI   L+  +  N+  ++LLSN+YA  G  D    +R ++K +G++K PG SSI +  ++
Sbjct: 438 KIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQL 497

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT--QIVL-----HDIGE--KQKQNS 408
           H F+AGD  HP++ +IYM L+++   L+  GYVP T  Q++       D  E  ++ +  
Sbjct: 498 HRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQV 557

Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
           L  HSEKLA+ FGL+ST   + + I KNLR+C DCH+  K+ S    R+I++RDR RFH 
Sbjct: 558 LFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFHS 617

Query: 469 FVNGTCSCGDYW 480
           F  G+CSC DYW
Sbjct: 618 FKQGSCSCSDYW 629


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/431 (43%), Positives = 275/431 (63%), Gaps = 2/431 (0%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G++ ++  LF+D+  K++V WN MI  + Q+GLA + L  F        EP++ T 
Sbjct: 179 YGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATF 238

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           +AVL +C  +G +   + IH  I        N  + TAL+++YSK G L+D+  VF  + 
Sbjct: 239 LAVLRSCEDMGVVRLAQGIHGLIMFG-GFSGNKCITTALLDLYSKLGRLEDSSTVFHEIT 297

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             D + W +M+  YA HGFG+DA++ F  M    + P  +TF  LL+AC+H+GLV EG+ 
Sbjct: 298 SPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKH 357

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
           +F TM   Y I+P+++HY CMV+LL R+G +++AY L+ +M +EP S +WG LLGACR++
Sbjct: 358 YFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVY 417

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
            +  LG K AE L      +   YV+LSNIY+A G W   +R+R LMK+KG+ +  GCS 
Sbjct: 418 KDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSY 477

Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSL 409
           IE  NK+H+F+ GD  HP+S++I   L+EI   +K+E GY  +T+ VLHD+GE  K+  +
Sbjct: 478 IEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMI 537

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEK+A+AFGL+   P   I I KNLR+C DCH   K IS    R+I++RD  RFHHF
Sbjct: 538 NQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHF 597

Query: 470 VNGTCSCGDYW 480
           ++G+CSC DYW
Sbjct: 598 LDGSCSCSDYW 608



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 128/252 (50%), Gaps = 15/252 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--E 104
           ++ CY + G    A  LFD+M E+D+V WN +I GY+  G   +   +  RM+  +V   
Sbjct: 72  LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFR 131

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNEVT ++++SAC   G+ E GR IH  +     +   V+V  A IN Y K G L  +  
Sbjct: 132 PNEVTFLSMISACVYGGSKEEGRCIHGLVMKF-GVLEEVKVVNAFINWYGKTGDLTSSCK 190

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ ++ K++V WN+MIV +  +G  +  L  FN   R+  +P   TF+ +L +C   G+
Sbjct: 191 LFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGV 250

Query: 225 VN-----EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           V       G   F        I         +++L S+ G++E++  +  ++   PDS+ 
Sbjct: 251 VRLAQGIHGLIMFGGFSGNKCITT------ALLDLYSKLGRLEDSSTVFHEI-TSPDSMA 303

Query: 280 WGTLLGACRLHG 291
           W  +L A   HG
Sbjct: 304 WTAMLAAYATHG 315



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 105/215 (48%), Gaps = 16/215 (7%)

Query: 96  RRMLAEK-----VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           RR L++      ++ N  + +A + +C  I   E  R +H  +  S + +    +G  L+
Sbjct: 18  RRFLSQSSFVHSLDANVSSLIAAVKSCVSI---ELCRLLHCKVVKSVSYRHGF-IGDQLV 73

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPS 208
             Y + G    A  +FD + ++D+V WNS+I GY+  G+     ++ + M    +  +P+
Sbjct: 74  GCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPN 133

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           ++TF+ ++SAC + G   EG R  + +  ++ +  +V+     +N   + G +  + KL 
Sbjct: 134 EVTFLSMISACVYGGSKEEG-RCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLF 192

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            D+ I+ + V W T++    +H    L EK   Y 
Sbjct: 193 EDLSIK-NLVSWNTMI---VIHLQNGLAEKGLAYF 223


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/483 (39%), Positives = 301/483 (62%), Gaps = 40/483 (8%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +K   D DL+V++ ++D+Y + GD+++A                                
Sbjct: 1134 IKAGFDSDLHVNSGILDMYIKCGDMVNAG------------------------------- 1162

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            ++F+ +   D V W  MI G   +G  ++AL ++ RM   +V P+E T   ++ A   + 
Sbjct: 1163 IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVT 1222

Query: 122  ALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
            ALE GR +H+ +     IK++      VGT+L++MY+KCG+++DA  +F ++N +++ +W
Sbjct: 1223 ALEQGRQLHANV-----IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 1277

Query: 178  NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            N+M+VG A HG  ++A+ LF  M    ++P  ++FIG+LSAC+HAGL +E   + ++M +
Sbjct: 1278 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 1337

Query: 238  EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
            +Y IEP++EHY C+V+ L RAG V+EA K++  M  +  + +   LLGACR+ G++  G+
Sbjct: 1338 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 1397

Query: 298  KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
            ++A  L +    +S  YVLLSNIYAA   WD V   R +MK K V+K+PG S I++ N +
Sbjct: 1398 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNML 1457

Query: 358  HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
            H F+  D  HP++  IY  +EE+   ++ +GYVP T+ VL D+ +++K+ SL  HSEKLA
Sbjct: 1458 HLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLA 1517

Query: 418  VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
            +A+GLIST   T+I+++KNLRVC DCH   K ISK   R+I++RD NRFHHF +G CSCG
Sbjct: 1518 IAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCG 1577

Query: 478  DYW 480
            DYW
Sbjct: 1578 DYW 1580



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 133/249 (53%), Gaps = 5/249 (2%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            TT++  Y+K G++  A  LF + ++ D+ CWN M+ GY       +AL LF  +     +
Sbjct: 1045 TTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEK 1104

Query: 105  PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             +++T      ACG +  L+ G+ IH++   +     ++ V + +++MY KCG + +A +
Sbjct: 1105 SDQITLATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIKCGDMVNAGI 1163

Query: 165  VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            VF+ ++  D V W SMI G   +G    AL++++ M + R+ P + TF  L+ A +    
Sbjct: 1164 VFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 1223

Query: 225  VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            + +GR+   N +K +   +P V     +V++ ++ G +E+AY+L   M +  +  LW  +
Sbjct: 1224 LEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAM 1280

Query: 284  LGACRLHGN 292
            L     HGN
Sbjct: 1281 LVGLAQHGN 1289



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 14/176 (7%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA-----QHGLANEALVLFRRML 99
             +LT Y+K G +++AR +FD   E+D+V WN ++  YA       G A E L LFR + 
Sbjct: 660 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLR 719

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSK 155
           A       +T   VL  C   G L +   +H Y      IK+ ++    V  AL+N+YSK
Sbjct: 720 ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYA-----IKIGLEWDVFVSGALVNIYSK 774

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           CG ++DARL+FD + ++DVV+WN M+ GY   G  K+A QLF+E  R  L+P + +
Sbjct: 775 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFS 830



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 131/250 (52%), Gaps = 6/250 (2%)

Query: 45   TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +++  Y+K G    AR +F+DM+  D++ WN MI   AQ  L  E++ LF  +L E ++
Sbjct: 943  NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLK 1002

Query: 105  PNEVTAVAVLSACGQ-IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T  +VL AC   I  L   R IH +   + NI  +  V T LI++YSK G +++A 
Sbjct: 1003 PDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI-ADSFVATTLIDVYSKSGKMEEAE 1061

Query: 164  LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
             +F   +D D+  WN+M+ GY +   GK AL+LF+ + +   K   IT      AC    
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 224  LVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
            L+++G++   + +K  +  +  V     ++++  + G +  A  +V +    PD V W +
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVN--SGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTS 1178

Query: 283  LLGACRLHGN 292
            ++  C  +GN
Sbjct: 1179 MISGCVDNGN 1188



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 51/330 (15%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +K  L+ D++VS +LV++Y++ G +  A  LF  M +R +V    ML  Y + G    A 
Sbjct: 754  IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAF 813

Query: 62   VLFDDM---------------------------------------------EEKDVVCWN 76
             LF +                                              +  DV CWN
Sbjct: 814  QLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWN 873

Query: 77   VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
              +      G    A+  F  M    ++ + VT + VL+A      LE G+ +H  I   
Sbjct: 874  KKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHG-IAVK 932

Query: 137  RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
              +  +V V  +L+NMYSK G    AR VF+ +   D++ WNSMI   A     ++++ L
Sbjct: 933  SGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNL 992

Query: 197  FNEMCRIRLKPSDITFIGLLSACAH--AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
            F ++    LKP   T   +L AC+    GL    +   + +K     +  V     ++++
Sbjct: 993  FIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVA--TTLIDV 1050

Query: 255  LSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             S++G++EEA + +   K + D   W  ++
Sbjct: 1051 YSKSGKMEEA-EFLFQNKDDLDLACWNAMM 1079



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 28/241 (11%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G +  AR+LFD M E+DVV WN+M+ GY Q GL  EA  LF       + P+
Sbjct: 768 LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPD 827

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E +   +L+   ++   + G+W+   ++                  Y+   SL D     
Sbjct: 828 EFSVQLILNGVSEVN-WDEGKWLADQVQ-----------------AYAAKLSLSD----- 864

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
              ++ DV  WN  +      G    A++ F  M  + +    +T + +L+A A    + 
Sbjct: 865 ---DNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLE 921

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G++  + +  +  ++  V     +VN+ S+ G    A ++  DMK   D + W +++ +
Sbjct: 922 LGKQ-VHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISS 979

Query: 287 C 287
           C
Sbjct: 980 C 980


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/436 (44%), Positives = 285/436 (65%), Gaps = 3/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  +AK GE   A  +FD+M   D + WN +I G+AQ+  ++ AL LF+RM      
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             + T  +VL AC  +  LE G   H +I        ++ +  AL++MY KCGSL+DA  
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ---DLILNNALVDMYCKCGSLEDALR 314

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+++ ++DV+ W++MI G A +G+ ++AL+LF  M     KP+ IT +G+L AC+HAGL
Sbjct: 315 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGL 374

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + +G  +F +MK  Y I+P  EHYGCM++LL +AG++++A KL+ +M+ EPD+V W TLL
Sbjct: 375 LEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+  N+ L E  A+ +I+ +  ++GTY LLSNIYA    WD V  +RT M+++G++K
Sbjct: 435 GACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKK 494

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS IE++ ++H F+ GD  HP+  E+   L ++   L   GYVP+T  VL D+  +Q
Sbjct: 495 EPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQ 554

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            ++SL  HSEKLA+AFGL++      I+I KNLR+C DCH   KL SK   R I++RD  
Sbjct: 555 MEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPI 614

Query: 465 RFHHFVNGTCSCGDYW 480
           R+HHF +G CSCGDYW
Sbjct: 615 RYHHFQDGKCSCGDYW 630



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 147/318 (46%), Gaps = 29/318 (9%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K   +  A  LFD M +++V+ W  MI  Y++  +  +AL L   ML + V
Sbjct: 99  VNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV 158

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T  +VL +C     +   R +H  I     ++ +V V +ALI++++K G  +DA 
Sbjct: 159 RPNVYTYSSVLRSCN---GMSDVRMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDAL 214

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD +   D +VWNS+I G+A +     AL+LF  M R        T   +L AC    
Sbjct: 215 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274

Query: 224 LVNEGRRFFNTMKDEYAI---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           L+  G      M+    I   +  +     +V++  + G +E+A ++   MK E D + W
Sbjct: 275 LLELG------MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITW 327

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGT---YVLLSNIYAAIGNW----DGVARV 333
            T++     +G      K+ E      + +SGT   Y+ +  +  A  +     DG    
Sbjct: 328 STMISGLAQNGYSQEALKLFE-----RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382

Query: 334 RTLMKEKG---VQKEPGC 348
           R++ K  G   V++  GC
Sbjct: 383 RSMKKLYGIDPVREHYGC 400



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 1/144 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           + L+    ++  Y K G +  A  +F+ M+E+DV+ W+ MI G AQ+G + EAL LF RM
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            +   +PN +T V VL AC   G LE G +    ++    I    +    +I++  K G 
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 159 LKDA-RLVFDRVNDKDVVVWNSMI 181
           L DA +L+ +   + D V W +++
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLL 434


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 302/479 (63%), Gaps = 7/479 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT---TMLTCYAKQGEVAAARVLFD 65
           D+    +L++ Y+R GD+    +LF+ M  R++ +     T++  Y K G V  AR + D
Sbjct: 293 DVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLD 352

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            M  +  V W  MI  YAQ+G A EA+ LF+ M  E  EP+++T ++V+ +C  +G L  
Sbjct: 353 AMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSL 412

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVG 183
           G+ IH+ I +S     ++ +  A+I MY KCG+L+ AR VF+ V    + VV W +MI  
Sbjct: 413 GKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRA 472

Query: 184 YAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           YA +G G++A++LF EM      +P+ +TF+ +LSAC+H G + +    F +M  ++ + 
Sbjct: 473 YAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVP 532

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           P  +HY C+V+LL RAG++ EA KL++  K  E D V W   L AC+++G++   ++ A+
Sbjct: 533 PAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAK 592

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +      N    VLLSN+YAA G    VAR+R  MK  GV+K  G S IE++N+VHEF+
Sbjct: 593 RVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFM 652

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             D+ HP+  EIY  LE ++  +K  GYVP T++VL D+ E++K   L  HSE+LA+A G
Sbjct: 653 VSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALG 712

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +IST PGT++++VKNLRVC DCHA  K IS+  GR+I++RD +RFHHF +G CSCGDYW
Sbjct: 713 IISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 11/308 (3%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D+D     +++  Y +   V  AE LFA +  R+  S + +L  YA+ G +  A+  FD 
Sbjct: 198 DRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDR 257

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M ++D + +  M    +  G    A  + R + A  V    +   A+L    + G L+  
Sbjct: 258 MPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDV----IAWNALLEGYSRTGDLDEV 313

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           R + S +E+ R +   V  GT L+N+Y KCG + DAR V D +  +  V W +MI  YA 
Sbjct: 314 RRLFSAMEH-RTVATTVVAGT-LVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQ 371

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G   +A+ LF  M     +PSDIT I ++ +CA  G ++ G+R    ++        + 
Sbjct: 372 NGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLM 431

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL-WGTLLGACRLHGNIALGEKIAEYLIS 305
               ++ +  + G +E A ++   + +   SV+ W  ++   R +    +GE+  E L  
Sbjct: 432 LLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMI---RAYAQNGVGEEAIE-LFQ 487

Query: 306 QNLANSGT 313
           + + + GT
Sbjct: 488 EMVIDGGT 495



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 135/316 (42%), Gaps = 45/316 (14%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM-EE 69
           Y  + ++  Y     +  A  LF +MP     +   M+  YA+   +  AR LF  M   
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISG 133

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP--NEVTAVAVLSACGQIGALESGR 127
           +DVV W +++ GYA+H    EA  LFRRM      P  + VT  +VL      G L   +
Sbjct: 134 RDVVSWAILVAGYARHDRLEEASALFRRM------PLWDTVTCTSVLQGYAHNGHLAEAQ 187

Query: 128 -------------------WIHSYIENSR---------NIKV-NVQVGTALINMYSKCGS 158
                               I +Y +N+R          IK+ N    + L+  Y++ G 
Sbjct: 188 ELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGH 247

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L  A+  FDR+  +D + + +M    +  G     L+   EM R       I +  LL  
Sbjct: 248 LDLAKKSFDRMPQRDSIAFTAMTAVLSDQG----ELRGAREMLRYLSAVDVIAWNALLEG 303

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            +  G ++E RR F+ M+        V   G +VNL  + G+V++A +++  M +   SV
Sbjct: 304 YSRTGDLDEVRRLFSAMEHRTVATTVVA--GTLVNLYGKCGRVDDARRVLDAMPVRT-SV 360

Query: 279 LWGTLLGACRLHGNIA 294
            W  ++ A   +GN A
Sbjct: 361 SWTAMIAAYAQNGNAA 376



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 15/178 (8%)

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           + AC     L   + +H  I  S +   N ++   LI+++ KCG    AR VF+RV   +
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGD-NRRLTNLLIDLFGKCGDPDAARAVFNRVRLPN 72

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
              W+ +I  Y       DA  LF+ M          T+  +++A A    +++ R  F+
Sbjct: 73  EYSWSCIIQAYVSSSRIHDARALFDSMPGF----DAFTWNIMIAAYARINRLDDARELFH 128

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            M         V  +  +V   +R  ++EEA  L   M       LW T+     L G
Sbjct: 129 GMISGR----DVVSWAILVAGYARHDRLEEASALFRRMP------LWDTVTCTSVLQG 176


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/468 (42%), Positives = 284/468 (60%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++V  +A  GD+ +AE+ F   P + + V  T M++ Y   G V  A   F+ M  + +V
Sbjct: 151 AMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLV 210

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
            WN ++ GY ++  A +AL +F+ M+ +  V PNE T  +VL  C  + AL  GR +H +
Sbjct: 211 SWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQW 270

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +   V  GT+L++MY KCG L  A  +F  +  +DV+ WN+MI GYA HG G++
Sbjct: 271 C-TKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGRE 329

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A++LF +M    ++P+ ITF+ +L+AC H G+ + G + F  M++ Y IE +V+HY CMV
Sbjct: 330 AIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMV 389

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +LL RAG +E A  L+  M  +P    +GTLL A R++ N+   E  A  LI QN  N+G
Sbjct: 390 DLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAG 449

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKE 372
            YV L+NIYA    W  V+RVR  MK+  V K PG S +E++  +H F + D  HP+   
Sbjct: 450 AYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSL 509

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I+  L ++   +KA GYVP     LHD+ E  K   L  HSEKLA+AFGL+ST PG +++
Sbjct: 510 IHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLR 569

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I KNLRVC DCH   KLISK   R+I++RD  RFHHF +G CSCGDYW
Sbjct: 570 IFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 137/286 (47%), Gaps = 17/286 (5%)

Query: 29  AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHG 86
           A  LF  +P+   VS  T+L+C+   G+V  AR LF  M    ++V  WN M+ G ++ G
Sbjct: 70  ARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSG 129

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
              EA  +F  M A     N ++  A++S     G + +        E++ + K N  + 
Sbjct: 130 AVGEARAVFLAMPAR----NSISWNAMVSCFAHAGDMCAA---EECFEDAPD-KENAVLW 181

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRL 205
           TA+++ Y   G ++ A   F+ +  + +V WN+++ GY  +   +DAL +F  M R   +
Sbjct: 182 TAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADV 241

Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
           +P++ T   +L  C++   +  GR+       +  +  +V     +V++  + G ++ A 
Sbjct: 242 RPNESTLSSVLLGCSNLSALGFGRQVHQWCT-KLPLSRRVTAGTSLVSMYCKCGDLDGAC 300

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEKIAEYLISQN 307
           KL  +M+I  D + W  ++     HG+    I L EK+    +  N
Sbjct: 301 KLFSEMRIR-DVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPN 345



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            K  L + +   TSLV +Y + GD+  A KLF+ M  R +++   M++ YA         
Sbjct: 272 TKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYA--------- 322

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   EA+ LF +M ++ VEPN +T VAVL+AC   G
Sbjct: 323 ----------------------HHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTG 360

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             + G      ++    I+  V   + ++++  + GSL+ A
Sbjct: 361 MCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERA 401



 Score = 44.7 bits (104), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L DAR +FDR+   D V +N+++  +   G  + A  LF  M       +  ++  +LS 
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVT--SWNTMLSG 124

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            + +G V E R  F  M    +I      +  MV+  + AG +  A +   D   + ++V
Sbjct: 125 LSRSGAVGEARAVFLAMPARNSIS-----WNAMVSCFAHAGDMCAAEECFEDAPDKENAV 179

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           LW  ++      G++    +  E +  ++L
Sbjct: 180 LWTAMVSGYMDSGHVEKAMQFFEAMPVRSL 209


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/479 (40%), Positives = 303/479 (63%), Gaps = 17/479 (3%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +K  +  D +V  SL+D+Y + G++  A  +F  +PQ S + + +  +C           
Sbjct: 547  LKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSM-MNSEESC----------- 594

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                D    + V W+ M+ GY Q+G   +AL  F  M+  +VE ++ T  +V+SAC   G
Sbjct: 595  ----DDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAG 650

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             LE GR +H YI+   +  ++V +G+++I+MY KCGSL DA L+F++  D++VV+W SMI
Sbjct: 651  VLELGRQVHGYIQKIGH-GLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMI 709

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             G A+HG G++A++LF  M    + P++++F+G+L+AC+HAGL+ EG ++F  M++ Y I
Sbjct: 710  SGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGI 769

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P  EH+ CMV+L  RAG++ E  + + +  I   S +W + L +CR+H NI +G  + +
Sbjct: 770  RPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCK 829

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L+     ++G Y+L S+I A    W+  A++R+LM+++GV+K P  S I+L N+VH F+
Sbjct: 830  KLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFV 889

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP+  +IY  L+E+ G LK  GY      V+ D+ ++Q+Q  L  HSEKLA+A+G
Sbjct: 890  MGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYG 949

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            +IST PGT I+++KNLRVC DCH   K  S+  GR+I++RD +RFHHF +G CSC DYW
Sbjct: 950  IISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 161/329 (48%), Gaps = 38/329 (11%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           LD D  ++ S++D Y +      AEKLF  M ++  VS   M++ Y + G++  +  LF 
Sbjct: 419 LDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFR 478

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            +  KD   WN MIDG  ++G    AL L  +M+A     N++T    L     +  L  
Sbjct: 479 QLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGL 538

Query: 126 GRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDK--------- 172
           G+ IH+ +     +KV V     V  +LI+MY KCG ++ A ++F  +  +         
Sbjct: 539 GKQIHTQV-----LKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEES 593

Query: 173 --DVVV----WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             D VV    W+SM+ GY  +G  +DAL+ F+ M   +++    T   ++SACA AG++ 
Sbjct: 594 CDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLE 653

Query: 227 EGRRFFNTMKDEYAIEPKVEH------YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            GR+    ++       K+ H         ++++  + G + +A+ L+ +   + + VLW
Sbjct: 654 LGRQVHGYIQ-------KIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLW 705

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLA 309
            +++  C LHG      ++ E +I++ + 
Sbjct: 706 TSMISGCALHGQGREAVRLFELMINEGIT 734



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK   +  A  +F+++ + DV  W V+I G+A+ GL+ + L LF +M  + V PN
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 107 EVTAVAVLSACGQ-IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + T   VL +C   +     G+ IH +I  +  + ++  +  ++++ Y KC     A  +
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRN-GLDLDAVLNNSILDYYVKCRCFGYAEKL 445

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
           F  + +KD V WN M+  Y   G  + ++ LF ++
Sbjct: 446 FGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205
           G  L+N+Y+K  +L+ A  +F+ +   DV  W  +I G+A  G   D L LF +M    +
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 206 KPSDITFIGLLSACAHAGLVNEGR 229
            P+  T   +L +C+    VN+ R
Sbjct: 384 CPNQFTLSIVLKSCSSN--VNDSR 405


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/530 (39%), Positives = 313/530 (59%), Gaps = 53/530 (10%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K S ++ +  S +L+D+Y++ GD+  A ++F  M +R++VS T+M+  Y + G    A 
Sbjct: 278 IKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAI 337

Query: 62  VLFDDMEE--------------------------KDV--------------VCWNVMIDG 81
            L   ME+                          KDV              VC N ++D 
Sbjct: 338 KLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC-NALMDM 396

Query: 82  YAQHGLANEALVLFRRMLAEKV----------EPNEVTAVAVLSACGQIGALESGRWIHS 131
           YA+ G    A  +F  M+ + +          +P+  T   VL AC  + ALE G+ IH 
Sbjct: 397 YAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHG 456

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           YI  +     +  V  AL+++Y KCG L  ARL+FD +  KD+V W  MI GY MHG+G 
Sbjct: 457 YILRN-GYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+  FNEM    ++P +++FI +L AC+H+GL+ +G RFF  MK+++ IEPK+EHY CM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LLSR G + +AY+ +  + I PD+ +WG LL  CR + +I L EK+AE +      N+
Sbjct: 576 VDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENT 635

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG-DLRHPKS 370
           G YVLL+NIYA    W+ V R+R  + ++G++K PGCS IE+  KV+ F++G +  HP S
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHS 695

Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
           K I  +L+++   +K EG+ P+T+  L +  E QK+ +L  HSEKLA+AFGL++  P  +
Sbjct: 696 KNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I++ KNLRVC DCH + K +SK T R+I++RD NRFHHF +G CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 154/302 (50%), Gaps = 25/302 (8%)

Query: 5   SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA------ 58
           S+  D  +   LV  YA  GD+    ++F TM ++++     M++ YAK G+        
Sbjct: 129 SVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLF 188

Query: 59  --------------AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
                         +A  LFD + ++DV+ WN MI GY  +GL    L ++++M+   ++
Sbjct: 189 KIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 248

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            +  T ++VL  C   G L  G+ +HS  I++S   ++N      L++MYSKCG L  A 
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFS--NTLLDMYSKCGDLDGAL 306

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+++ +++VV W SMI GY   G    A++L  +M +  +K   +    +L ACA +G
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            ++ G+   + +K    +E  +     ++++ ++ G +E A  +   M ++ D + W T+
Sbjct: 367 SLDNGKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTM 424

Query: 284 LG 285
           +G
Sbjct: 425 IG 426



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 147/360 (40%), Gaps = 90/360 (25%)

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           +  V  +N  I  + Q G    A+ L    + +K E    T  +VL  C  + +   G+ 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELI--CMCQKSELETKTYGSVLQLCAGLKSFTDGKK 120

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV----------------------- 165
           +HS I+ S ++ V+  +G  L++ Y+ CG LK+ R V                       
Sbjct: 121 VHSIIK-SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179

Query: 166 ----------------------------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
                                       FD++ D+DV+ WNSMI GY  +G  +  L ++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIY 239

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGR---------------RFFNTMKDEYAI- 241
            +M  + +     T I +L  CA++G ++ G+                F NT+ D Y+  
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 242 --------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLL 284
                         E  V  +  M+   +R G+ + A KL+  M+   ++ D V   ++L
Sbjct: 300 GDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSIL 359

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKEKGV 342
            AC   G++  G+ + +Y+ + N+  S  +V   L ++YA  G+ +    V + M  K +
Sbjct: 360 HACARSGSLDNGKDVHDYIKANNM-ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/484 (39%), Positives = 301/484 (62%), Gaps = 40/484 (8%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K   D DL+V++ ++D+Y + GD+++A                               
Sbjct: 56  AIKAGFDSDLHVNSGILDMYIKCGDMVNAG------------------------------ 85

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            ++F+ +   D V W  MI G   +G  ++AL ++ RM   +V P+E T   ++ A   +
Sbjct: 86  -IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCV 144

Query: 121 GALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
            ALE GR +H+ +     IK++      VGT+L++MY+KCG+++DA  +F ++N +++ +
Sbjct: 145 TALEQGRQLHANV-----IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIAL 199

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
           WN+M+VG A HG  ++A+ LF  M    ++P  ++FIG+LSAC+HAGL +E   + ++M 
Sbjct: 200 WNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMP 259

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
           ++Y IEP++EHY C+V+ L RAG V+EA K++  M  +  + +   LLGACR+ G++  G
Sbjct: 260 NDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXG 319

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
           +++A  L +    +S  YVLLSNIYAA   WD V   R +MK K V+K+PG S I++ N 
Sbjct: 320 KRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNM 379

Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
           +H F+  D  HP++  IY  +EE+   ++ +GYVP T+ VL D+ +++K+ SL  HSEKL
Sbjct: 380 LHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKL 439

Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
           A+A+GLIST   T+I+++KNLRVC DCH   K ISK   R+I++RD NRFHHF +G CSC
Sbjct: 440 AIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSC 499

Query: 477 GDYW 480
           GDYW
Sbjct: 500 GDYW 503



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 112/216 (51%), Gaps = 5/216 (2%)

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           M+ GY       +AL LF  +     + +++T      ACG +  L+ G+ IH++   + 
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA- 59

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
               ++ V + +++MY KCG + +A +VF+ ++  D V W SMI G   +G    AL+++
Sbjct: 60  GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 119

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLS 256
           + M + R+ P + TF  L+ A +    + +GR+   N +K +   +P V     +V++ +
Sbjct: 120 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYA 177

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + G +E+AY+L   M +  +  LW  +L     HGN
Sbjct: 178 KCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGN 212


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/488 (41%), Positives = 294/488 (60%), Gaps = 9/488 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTT----MLTCYAK-QGE 56
           V+  L  D++   S++  +    D++   +    M +      +     ++  Y+K  G 
Sbjct: 235 VRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGG 294

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQH-GLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
           +   R +F+++   D+V WN MI G++Q+  L+ + +  FR M      P++ + V V S
Sbjct: 295 MVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTS 354

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           AC  + +   G+ +H+    S      V V  AL+ MYSKCG++ DAR VFD + + ++V
Sbjct: 355 ACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMV 414

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
             NSMI GYA HG   ++L+LF  M +  + P+ ITFI +LSAC H G V EG+++FN M
Sbjct: 415 SLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMM 474

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIAL 295
           K+ + IEP+ EHY CM++LL RAG+++EA +++  M   P S+ W TLLGACR HGN+ L
Sbjct: 475 KERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVEL 534

Query: 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN 355
             K A   +     N+  YV+LSN+YA+   W+  A V+ LM+E+GV+K+PGCS IE+  
Sbjct: 535 AVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDK 594

Query: 356 KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL---HDIGEKQKQNSLEVH 412
           KVH F+A D  HP  KEI++ + EI   +K  GYVP  +  L    ++   +K+  L  H
Sbjct: 595 KVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYH 654

Query: 413 SEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           SEKLAVAFGLIST+    I +VKNLR+C DCH   KLIS  TGR+I +RD +RFH F  G
Sbjct: 655 SEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEG 714

Query: 473 TCSCGDYW 480
            CSCGDYW
Sbjct: 715 HCSCGDYW 722



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 134/280 (47%), Gaps = 13/280 (4%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+S     LY++ G + +A+  F      ++ S  T++  YAK   +  AR +FD++ + 
Sbjct: 45  YLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQP 104

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D+V +N +I  YA  G    AL LF  +   +   +  T   V+ ACG    L   R +H
Sbjct: 105 DIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLV--RQLH 162

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMH 187
            ++           V  A++  YS+ G L +AR VF  + +   +D V WN+MIV    H
Sbjct: 163 CFVVVC-GYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQH 221

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVE 246
             G +A++LF EM R  LK    T   +L+A      +  G +F   M K  +       
Sbjct: 222 REGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGN---S 278

Query: 247 HYGC-MVNLLSR-AGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           H G  +++L S+ AG + E  K+  ++   PD VLW T++
Sbjct: 279 HVGSGLIDLYSKCAGGMVECRKVFEEIA-APDLVLWNTMI 317


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/482 (41%), Positives = 291/482 (60%), Gaps = 16/482 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK  +  + +V  +L+D+YAR G +  A  +FA +  R +VS  T++T    QG ++ A 
Sbjct: 393 VKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAF 452

Query: 62  VLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
            L  +M+          M++G       ++  V  +R +     PN +T + +L  C  +
Sbjct: 453 QLVREMQLPSSAASGETMLEG-------DDTSVDGQRCM-----PNNITLMTLLPGCAVL 500

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A   G+ IH Y      ++ ++ VG+AL++MY+KCG L  AR VFDR+  ++V+ WN +
Sbjct: 501 AAPARGKEIHGYAVR-HALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVL 559

Query: 181 IVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           I+ Y MHG G +AL LF+ M       P+++TFI  L+AC+H+GLV+ G   F  MK +Y
Sbjct: 560 IMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDY 619

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LWGTLLGACRLHGNIALGEK 298
             EP    + C+V++L RAG+++EAY ++  M      V  W T+LGACRLH N+ LG  
Sbjct: 620 GFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRI 679

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
            AE L       +  YVLL NIY+A G W+    VR +M+++GV KEPGCS IEL   +H
Sbjct: 680 AAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIH 739

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
            F+AG+  HP+S +++  ++ +   ++ EGYVP T  VLHD+ E +K   L  HSEKLA+
Sbjct: 740 RFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAI 799

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGL+   PG +I++ KNLRVC DCH   K IS+  GR+I++RD  RFHHF +GTCSCGD
Sbjct: 800 AFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGD 859

Query: 479 YW 480
           YW
Sbjct: 860 YW 861



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 151/288 (52%), Gaps = 16/288 (5%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLF--DDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96
           R       +L+ YA+ G V  A+ LF        D+V WN MI    Q G   EA+ +  
Sbjct: 190 RERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLY 249

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
            M+A  V P+ VT  + L AC ++  L  GR +H+++    ++  N  V +AL++MY+  
Sbjct: 250 DMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASN 309

Query: 157 GSLKDARLVFDRVND--KDVVVWNSMIVGYAMH-GFGKDALQLFNEM-CRIRLKPSDITF 212
             +  AR VFD V +  + + +WN+MI GYA H G  ++A++LF+ M       PS+ T 
Sbjct: 310 EQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTM 369

Query: 213 IGLLSACAHAGLVNEGRRFFN--TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL--V 268
            G+L ACA +  V  G+   +   +K + A    V++   ++++ +R G+++EA+ +  +
Sbjct: 370 AGVLPACARSE-VFTGKEAVHGYVVKRDMASNRFVQN--ALMDMYARLGRMDEAHTIFAM 426

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316
           +D++   D V W TL+  C + G I+   ++   +   + A SG  +L
Sbjct: 427 IDLR---DIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETML 471



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 153/378 (40%), Gaps = 61/378 (16%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT-TMLTCYAKQGEVAAARV 62
           F+L   +  + +L D  +R    +    L   +  R   +++  +LT YA+ G++ AA  
Sbjct: 49  FALPPAIKSAAALRD--SRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 63  LFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           LF       +D V +N +I           AL   R MLA+  E +  T V+VL AC  +
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH-EVSSFTLVSVLLACSHL 165

Query: 121 G--ALESGRWIHSYI-------ENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDR-V 169
                  GR  H++        +       N     AL++MY++ G + DA RL F    
Sbjct: 166 ADQGHRLGREAHAFALKHGFLDKGRERFPFN-----ALLSMYARLGLVDDAQRLFFSSGA 220

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
              D+V WN+MI      G  ++A+Q+  +M  + ++P  +TF   L AC+   L+  GR
Sbjct: 221 GVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGR 280

Query: 230 RFF----------------NTMKDEYAIEPKVEHYGCMVNLLSRAGQV------------ 261
                              + + D YA   +V H   + +++   G+             
Sbjct: 281 EVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYA 340

Query: 262 ------EEAYKLVMDMKIE----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-N 310
                 EEA +L   M+ E    P       +L AC         E +  Y++ +++A N
Sbjct: 341 QHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASN 400

Query: 311 SGTYVLLSNIYAAIGNWD 328
                 L ++YA +G  D
Sbjct: 401 RFVQNALMDMYARLGRMD 418


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/473 (40%), Positives = 294/473 (62%), Gaps = 2/473 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SLVD+YA+ G       +F ++  ++ +S T M++ YA+ G    A  LF  M 
Sbjct: 139 DDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMP 198

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGR 127
            K+++ W  +I G  Q G   ++  LF  M ++ ++  +     +++ A   +  L  G+
Sbjct: 199 VKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGK 258

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            IH  +      + ++ V  AL++MY+KC  +  A+ +F R+  +D+V W S+IVG A H
Sbjct: 259 QIHCLVI-LLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQH 317

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL L+N M    LKP+++TF+GL+ AC+H GLV++GR FFN+M  +Y I P ++H
Sbjct: 318 GLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQH 377

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+++LLSR+G +EEA  L+  M  +PD   W  LL AC  H N  +G ++A++L+S  
Sbjct: 378 YTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLK 437

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +  TY+LLSNIYA+   W+ V++VR LM    V+KEPG S I L  +   FLAG+  H
Sbjct: 438 PEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSH 497

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P  +EI+ +LEE++  +K  GY+P T  VLHD+ +++K+  L  HSE+LAVA+GL+   P
Sbjct: 498 PAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIP 557

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G  + IVKNLRVC DCH V K IS    R+I++RD NR+HHF +G CSC ++W
Sbjct: 558 GMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 45/260 (17%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +  L+VS +LVD+YA+  DVL+A+K+F  M QR +VS                       
Sbjct: 270 ESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVS----------------------- 306

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
                   W  +I G AQHGLA EAL L+ RML+  ++PNEVT V ++ AC  +G +  G
Sbjct: 307 --------WTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKG 358

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYA 185
           R+  + +     I  ++Q  T L+++ S+ G L++A  +   +  K D   W +++    
Sbjct: 359 RYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACN 418

Query: 186 MHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGL---VNEGRRFFNTMKDEYAI 241
            H      +++ + +  + LKP D  T+I L +  A A +   V++ RR    M  E   
Sbjct: 419 HHRNTLIGIRVADHL--LSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAM--EVKK 474

Query: 242 EPKVEHYGCMVNLLSRAGQV 261
           EP    Y C+V  L +  QV
Sbjct: 475 EPG---YSCIV--LGKESQV 489



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 6/193 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP 105
           ++  Y K G +  A  LF+ +  +D + W  ++    Q  L +  L +F  M  +  ++P
Sbjct: 44  LINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQP 103

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +      ++ AC  +GA++ G+ +H+    S     +V V ++L++MY+KCG     R+V
Sbjct: 104 DHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDV-VKSSLVDMYAKCGLPDIGRVV 162

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD ++ K+ + W +MI GYA  G   DA+QLF +M    L    +++  L+S    +G  
Sbjct: 163 FDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALISGLVQSGNW 218

Query: 226 NEGRRFFNTMKDE 238
            +    F  M+ +
Sbjct: 219 VDSFYLFMEMRSK 231



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 17/235 (7%)

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC +  +   G+ +H +I  +  I     +   LINMY KCG ++DA  +F+++  +D
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKT-GIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRD 68

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFF 232
            + W S++            L +F  M +   L+P    F  L+ ACA  G + +G++  
Sbjct: 69  PISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVH 128

Query: 233 NTMKDEYAIEPKVEH---YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
            T    + + P  +       +V++ ++ G + +  ++V D     +S+ W  ++     
Sbjct: 129 AT----FIVSPVSDDDVVKSSLVDMYAKCG-LPDIGRVVFDSISSKNSISWTAMIS---- 179

Query: 290 HGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            G    G K+    + Q +   N  ++  L +     GNW     +   M+ KG+
Sbjct: 180 -GYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/483 (39%), Positives = 301/483 (62%), Gaps = 40/483 (8%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D DL+V++ ++D+Y + GD+++A                                
Sbjct: 419 IKAGFDSDLHVNSGILDMYIKCGDMVNAG------------------------------- 447

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           ++F+ +   D V W  MI G   +G  ++AL ++ RM   +V P+E T   ++ A   + 
Sbjct: 448 IVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVT 507

Query: 122 ALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
           ALE GR +H+ +     IK++      VGT+L++MY+KCG+++DA  +F ++N +++ +W
Sbjct: 508 ALEQGRQLHANV-----IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 562

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           N+M+VG A HG  ++A+ LF  M    ++P  ++FIG+LSAC+HAGL +E   + ++M +
Sbjct: 563 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 622

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           +Y IEP++EHY C+V+ L RAG V+EA K++  M  +  + +   LLGACR+ G++  G+
Sbjct: 623 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 682

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           ++A  L +    +S  YVLLSNIYAA   WD V   R +MK K V+K+PG S I++ N +
Sbjct: 683 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNML 742

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           H F+  D  HP++  IY  +EE+   ++ +GYVP T+ VL D+ +++K+ SL  HSEKLA
Sbjct: 743 HLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLA 802

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +A+GLIST   T+I+++KNLRVC DCH   K ISK   R+I++RD NRFHHF +G CSCG
Sbjct: 803 IAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCG 862

Query: 478 DYW 480
           DYW
Sbjct: 863 DYW 865



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 16/251 (6%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA-----QHGLANEALVLFRRMLAE 101
           +LT Y+K G +++AR +FD   E+D+V WN ++  YA       G A E L LFR + A 
Sbjct: 118 LLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRAS 177

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCG 157
                 +T   VL  C   G L +   +H Y      IK+    +V V  AL+N+YSKCG
Sbjct: 178 LGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYA-----IKIGLEWDVFVSGALVNIYSKCG 232

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            ++DARL+FD + ++DVV+WN M+ GY   G  K+A QLF+E  R  L+P + +   +L+
Sbjct: 233 RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILN 292

Query: 218 ACAHAGLVN-EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            C  AG  + E  +  + +  +  ++  V     +VN+ S+ G    A ++  DMK   D
Sbjct: 293 GCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLD 351

Query: 277 SVLWGTLLGAC 287
            + W +++ +C
Sbjct: 352 LISWNSMISSC 362



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 137/253 (54%), Gaps = 10/253 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y+K G    AR +F+DM+  D++ WN MI   AQ  L  E++ LF  +L E ++P
Sbjct: 326 SLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKP 385

Query: 106 NEVTAVAVL-----SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           +  T  ++       ACG +  L+ G+ IH++   +     ++ V + +++MY KCG + 
Sbjct: 386 DHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIKCGDMV 444

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +A +VF+ ++  D V W SMI G   +G    AL++++ M + R+ P + TF  L+ A +
Sbjct: 445 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 504

Query: 221 HAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
               + +GR+   N +K +   +P V     +V++ ++ G +E+AY+L   M +  +  L
Sbjct: 505 CVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIAL 561

Query: 280 WGTLLGACRLHGN 292
           W  +L     HGN
Sbjct: 562 WNAMLVGLAQHGN 574



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 10/253 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G +  AR+LFD M E+DVV WN+M+ GY Q GL  EA  LF       + P+
Sbjct: 224 LVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPD 283

Query: 107 EVTAVAVLSACGQIGA--LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           E +   +L+ C   G   LE G+ +H  I     +  +V V  +L+NMYSK G    AR 
Sbjct: 284 EFSVQLILNGCLWAGTDDLELGKQVHG-IAVKSGLDSDVSVANSLVNMYSKMGCAYFARE 342

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-----SDITFIGLLSAC 219
           VF+ +   D++ WNSMI   A     ++++ LF ++    LKP     + IT      AC
Sbjct: 343 VFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKAC 402

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
               L+++G++  +    +   +  +     ++++  + G +  A  +V +    PD V 
Sbjct: 403 GCLVLLDQGKQ-IHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVA 460

Query: 280 WGTLLGACRLHGN 292
           W +++  C  +GN
Sbjct: 461 WTSMISGCVDNGN 473


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 286/442 (64%), Gaps = 2/442 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +LV+ T ++  Y   G +  AR LFD +E +D   W V+I GY++ G     L L+R M 
Sbjct: 356 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK 415

Query: 100 -AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
              KV   ++    V+SAC  +GA    R  HS IE    I  +  + T+L+NMYS+ G+
Sbjct: 416 NTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS-DFVLATSLVNMYSRWGN 474

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L+ AR VFD+++ +D + W ++I GYA HG    AL L+ EM     +PS++TF+ +L A
Sbjct: 475 LESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYA 534

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+HAGL  +G++ F +++ +YA+ P + HY C+++LLSRAG++ +A +L+  M +EP+ V
Sbjct: 535 CSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDV 594

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
            W +LLGA R+H ++      A  +   +  +  +YVLLSN++A  GN  G+A VR  M 
Sbjct: 595 TWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMV 654

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
            +GV+K  G S IE+++++HEF  GD  HP+ +EI+  L+ ++  +K  GYVP+++ VLH
Sbjct: 655 ARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLH 714

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           D+GEK+K+  L +HSEKLA+AFGLI+T PGT+++I   LR+C DCH+  K IS    R+I
Sbjct: 715 DVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREI 774

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RD +RFH F +G CSCGDYW
Sbjct: 775 IVRDSSRFHKFRDGQCSCGDYW 796



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 141/241 (58%), Gaps = 9/241 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K G VA+ARV FD +  K+   W  M+  YAQ+G    AL L++RM    ++PN
Sbjct: 64  IVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPN 120

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            V    VL AC  I ALE G+ IHS I  ++ +K++V +  +L+ MY+KCGSL+DA+ +F
Sbjct: 121 PVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF 180

Query: 167 DRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           +R++  + V  WN+MI  YA  G  ++A++L+ +M    ++PS  TF  +LSAC++ GL+
Sbjct: 181 ERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLL 237

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           ++GR+  + +      E  +     ++ + +R   +++A K+   +    D V W  ++ 
Sbjct: 238 DQGRK-IHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIA 295

Query: 286 A 286
           A
Sbjct: 296 A 296



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 136/249 (54%), Gaps = 9/249 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++LT YAK G +  A+ LF+ M   + V  WN MI  YAQ G   EA+ L+  M    VE
Sbjct: 162 SLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVE 218

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T  +VLSAC  +G L+ GR IH+ I +SR  ++++ +  AL+ MY++C  L DA  
Sbjct: 219 PSVRTFTSVLSACSNLGLLDQGRKIHALI-SSRGTELDLSLQNALLTMYARCKCLDDAAK 277

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F R+  +DVV W++MI  +A      +A++ +++M    ++P+  TF  +L ACA  G 
Sbjct: 278 IFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGD 337

Query: 225 VNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +  GR   +  + + Y I   + +   +V+L +  G ++EA  L  D     D  LW  L
Sbjct: 338 LRAGRAVHDQILGNGYKI--TLVNGTALVDLYTSYGSLDEARSL-FDQIENRDEGLWTVL 394

Query: 284 LGACRLHGN 292
           +G     G+
Sbjct: 395 IGGYSKQGH 403



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 6/253 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +LT YA+   +  A  +F  +  +DVV W+ MI  +A+  L +EA+  + +M  E V PN
Sbjct: 262 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 321

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +VL AC  +G L +GR +H  I  +   K+ +  GTAL+++Y+  GSL +AR +F
Sbjct: 322 YYTFASVLLACASVGDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLF 380

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLV 225
           D++ ++D  +W  +I GY+  G     L+L+ EM      P + I +  ++SACA  G  
Sbjct: 381 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 440

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            + R+  + ++ +  I   V     +VN+ SR G +E A + V D     D++ W TL+ 
Sbjct: 441 ADARQAHSDIEADGMISDFVLATS-LVNMYSRWGNLESA-RQVFDKMSSRDTLAWTTLIA 498

Query: 286 ACRLHGN--IALG 296
               HG   +ALG
Sbjct: 499 GYAKHGEHGLALG 511



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 45/227 (19%)

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           A  Q   LES R IH  I  + +   NV +G  ++  Y KCGS+  AR+ FD +  K+  
Sbjct: 33  ALRQCQDLESVRQIHDRISGAAS--ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDY 90

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG------- 228
            W SM+  YA +G  + AL L+    R+ L+P+ + +  +L ACA    + EG       
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYK---RMDLQPNPVVYTTVLGACASIEALEEGKAIHSRI 147

Query: 229 -----------------------------RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
                                        +R F  M    +    V  +  M+   +++G
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRS----VSSWNAMIAAYAQSG 203

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
             EEA +L  DM +EP    + ++L AC   G +  G KI   + S+
Sbjct: 204 HFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR 250



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  ++TSLV++Y+R G++ SA ++F  M  R  ++ TT++  YAK GE            
Sbjct: 458 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGE------------ 505

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                           HGL   AL L++ M  E  EP+E+T + VL AC   G  E G+ 
Sbjct: 506 ----------------HGL---ALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQ 546

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           +   I++   +  N+   + +I++ S+ G L DA  + + +  + + V W+S++    +H
Sbjct: 547 LFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIH 606

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              K A     ++   +L P D     LLS
Sbjct: 607 KDVKRATHAAGQI--TKLDPVDPASYVLLS 634


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/481 (41%), Positives = 294/481 (61%), Gaps = 36/481 (7%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           TVK  LD D++V +SL+D                                Y K G++   
Sbjct: 205 TVKVGLDSDVFVRSSLID-------------------------------AYMKLGDLDGG 233

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R +FD+M  +D+V WN +I G+AQ G    A+ LF RM       N+ T  +VL AC  +
Sbjct: 234 RRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGM 293

Query: 121 GALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             LE+GR +H+++ +  R++ ++     AL++MY KCGSL+DA  +F R+  +DV+ W++
Sbjct: 294 VMLEAGRQVHAHVLKYERDLILH----NALLDMYCKCGSLEDAEALFHRMPQRDVISWST 349

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A +G   +AL++F+ M    + P+ IT +G+L AC+HAGLV +G  +F +MK  +
Sbjct: 350 MISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLF 409

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
            I+P+ EH+ CMV+LL RAG+++EA + + DM +EPD+V+W TLLGACR+H +  L    
Sbjct: 410 GIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYA 469

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A  ++     + G  VLLSN YA +  W    +    M+++G++KEPG S IEL   VH 
Sbjct: 470 AREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHV 529

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F+AGDL HP S  I   L  + G + A GYVPQT+ VL D+  +QK++ L+ HSEK+A+A
Sbjct: 530 FIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIA 589

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           FG +    G  I+I+KNLR+C DCHA  KL+SK  GR I++RD  RFHHF +G CSCGDY
Sbjct: 590 FGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDY 649

Query: 480 W 480
           W
Sbjct: 650 W 650



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 13/304 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRMLAEKVE 104
           ++++ YAK G +  A  LFD M E++VV W  ++   A   G   EAL     M  + V 
Sbjct: 120 SLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVA 179

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN  T  +VL ACG  G L +   +H+       +  +V V ++LI+ Y K G L   R 
Sbjct: 180 PNAYTFSSVLGACGTPGVLAA---LHASTVKV-GLDSDVFVRSSLIDAYMKLGDLDGGRR 235

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +D+VVWNS+I G+A  G G  A++LF  M       +  T   +L AC    +
Sbjct: 236 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVM 295

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  GR+    +      E  +  +  ++++  + G +E+A  L   M  + D + W T++
Sbjct: 296 LEAGRQVHAHV---LKYERDLILHNALLDMYCKCGSLEDAEALFHRMP-QRDVISWSTMI 351

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTY---VLLSNIYAAIGNWDGVARVRTLMKEKG 341
                +G  A   ++ + + S+ +A +      VL +  +A +   DG    R++ K  G
Sbjct: 352 SGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVE-DGWYYFRSMKKLFG 410

Query: 342 VQKE 345
           +Q E
Sbjct: 411 IQPE 414



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIEN-------SRNIKVNVQVGTALINMYSKCGS 158
           + V+   ++  C + G    GR IH ++E        S      + V  +L++MY+K G 
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           L DA  +FDR+ +++VV W +++   A   G  ++AL+    M R  + P+  TF  +L 
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC   G++       +    +  ++  V     +++   + G ++   + V D  +  D 
Sbjct: 191 ACGTPGVLAA----LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRR-VFDEMVTRDL 245

Query: 278 VLWGTLLGACRLHGN 292
           V+W +++      G+
Sbjct: 246 VVWNSIIAGFAQSGD 260


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/437 (42%), Positives = 279/437 (63%), Gaps = 1/437 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K G++  A  +F +    D++    M+   +Q     +A+ LF +ML + +
Sbjct: 447 INGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGL 506

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EP+     ++L+AC  + A E G+ +H+++   R    +V  G AL+  Y+KCGS++DA 
Sbjct: 507 EPDSFVLSSLLNACTSLSAYEQGKQVHAHLIK-RQFTSDVFAGNALVYAYAKCGSIEDAD 565

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           + F  + ++ +V W++MI G A HG GK AL LF+ M    + P+ IT   +LSAC HAG
Sbjct: 566 MAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAG 625

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV++ +++F +MK+ + I+   EHY CM+++L RAG++E+A +LV +M  + ++ +WG L
Sbjct: 626 LVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGAL 685

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGA R+H +  LG   AE L +     SGT+VLL+N YA+ G WD +A+VR LMK+  V+
Sbjct: 686 LGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVK 745

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEP  S +E+ +KVH F+ GD  HP +++IY  L E+   +   GYVP  ++ LHD+   
Sbjct: 746 KEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRS 805

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +K+  L  HSE+LAVAF LIST  G  I++ KNLR+C DCH  FK ISK   R+I++RD 
Sbjct: 806 EKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDI 865

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF NGTCSCGDYW
Sbjct: 866 NRFHHFTNGTCSCGDYW 882



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDM----EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
            ++  Y   G V  AR +FD+      E++ V WN MI  Y ++  + +A+ +FR M+  
Sbjct: 140 ALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWS 199

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              PNE     V++AC     LE+GR +H  +  +   K +V    AL++MYSK G ++ 
Sbjct: 200 GERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEK-DVFTANALVDMYSKLGDIEM 258

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           A  VF+++   DVV WN+ I G   HG    AL+L  +M    L P+  T   +L ACA 
Sbjct: 259 AATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAG 318

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           AG  N GR+    M    A   +    G +V++ ++ G +++A K V D     D +LW 
Sbjct: 319 AGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARK-VFDFMPRRDLILWN 376

Query: 282 TLLGACRLHG 291
            L+  C   G
Sbjct: 377 ALISGCSHDG 386



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 43/344 (12%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           ++ + +   ++  Y+K G++  A  +F+ M   DVV WN  I G   HG  + AL L  +
Sbjct: 237 EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQ 296

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKC 156
           M +  + PN  T  +VL AC   GA   GR IH + ++   +    V VG  L++MY+K 
Sbjct: 297 MKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG--LVDMYAKH 354

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIG 214
           G L DAR VFD +  +D+++WN++I G +  G   + L LF+ M +  + L  +  T   
Sbjct: 355 GFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAS 414

Query: 215 LLSACAHAGLVNEGRRF------FNTMKDEYAIEPKVEHY-------------------- 248
           +L + A +  +   R+          + D + I   ++ Y                    
Sbjct: 415 VLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDD 474

Query: 249 ----GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
                 M+  LS+    E+A KL + M    +EPDS +  +LL AC        G+++  
Sbjct: 475 IISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHA 534

Query: 302 YLISQNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +LI +   +   +G  ++ +  YA  G+ +      + + E+G+
Sbjct: 535 HLIKRQFTSDVFAGNALVYA--YAKCGSIEDADMAFSGLPERGI 576



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +LT Y++    +AAR +FD++ +   V W+ ++  Y+ +G+  +AL+ FR M    V  N
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E     VL     +     G  +H+    +R +  +V V  AL+ +Y   G + +AR +F
Sbjct: 103 EFALPVVLKCAPDV---RFGAQVHALAVATRLVH-DVFVANALVAVYGGFGMVDEARRMF 158

Query: 167 DRV----NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           D       +++ V WN+MI  Y  +    DA+ +F EM     +P++  F  +++AC  +
Sbjct: 159 DEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGS 218

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
             +  GR+    +      E  V     +V++ S+ G +E A  +   M    D V W  
Sbjct: 219 RDLEAGRQVHGAVV-RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMP-AADVVSWNA 276

Query: 283 LLGACRLHGN 292
            +  C  HG+
Sbjct: 277 FISGCVTHGH 286



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 40/325 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D D +V+  LVD+YA+ G +  A K+F  MP+R                      
Sbjct: 333 VKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRR---------------------- 370

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQ 119
                    D++ WN +I G +  G   E L LF RM  E   ++ N  T  +VL +   
Sbjct: 371 ---------DLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTAS 421

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
             A+   R +H+  E    +  +  V   LI+ Y KCG L  A  VF      D++   +
Sbjct: 422 SEAICHTRQVHALAEKI-GLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTT 480

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDE 238
           M+   +    G+DA++LF +M R  L+P       LL+AC       +G++   + +K +
Sbjct: 481 MMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ 540

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
           +  +  V     +V   ++ G +E+A  +      E   V W  ++G    HG+      
Sbjct: 541 FTSD--VFAGNALVYAYAKCGSIEDA-DMAFSGLPERGIVSWSAMIGGLAQHGHGKRALD 597

Query: 299 IAEYLISQNLANSGTYVLLSNIYAA 323
           +   ++ + +A +  ++ L+++ +A
Sbjct: 598 LFHRMLDEGVAPN--HITLTSVLSA 620


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/442 (42%), Positives = 286/442 (64%), Gaps = 2/442 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +LV+ T ++  Y   G +  AR LFD +E +D   W V+I GY++ G     L L+R M 
Sbjct: 355 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK 414

Query: 100 -AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
              KV   ++    V+SAC  +GA    R  HS IE    I  +  + T+L+NMYS+ G+
Sbjct: 415 NTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS-DFVLATSLVNMYSRWGN 473

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L+ AR VFD+++ +D + W ++I GYA HG    AL L+ EM     +PS++TF+ +L A
Sbjct: 474 LESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYA 533

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+HAGL  +G++ F +++ +YA+ P + HY C+++LLSRAG++ +A +L+  M +EP+ V
Sbjct: 534 CSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDV 593

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
            W +LLGA R+H ++      A  +   +  +  +YVLLSN++A  GN  G+A VR  M 
Sbjct: 594 TWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMV 653

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
            +GV+K  G S IE+++++HEF  GD  HP+ +EI+  L+ ++  +K  GYVP+++ VLH
Sbjct: 654 ARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLH 713

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           D+GEK+K+  L +HSEKLA+AFGLI+T PGT+++I   LR+C DCH+  K IS    R+I
Sbjct: 714 DVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREI 773

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RD +RFH F +G CSCGDYW
Sbjct: 774 IVRDSSRFHKFRDGQCSCGDYW 795



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 140/240 (58%), Gaps = 8/240 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K G VA+AR  FD +  K+   W  M+  YAQ+G    AL L++RM    ++PN
Sbjct: 64  IVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPN 120

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            V    VL AC  I ALE G+ IHS I  ++ +K++V +  +L+ MY+KCGSL+DA+ +F
Sbjct: 121 PVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF 180

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +R++ + V  WN+MI  YA  G  ++A++L+ +M    ++PS  TF  +LSAC++ GL++
Sbjct: 181 ERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLD 237

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +GR+  + +      E  +     ++ + +R   +++A K+   +    D V W  ++ A
Sbjct: 238 QGRK-IHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAA 295



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 136/248 (54%), Gaps = 8/248 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++LT YAK G +  A+ LF+ M  + V  WN MI  YAQ G   EA+ L+  M    VEP
Sbjct: 162 SLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEP 218

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T  +VLSAC  +G L+ GR IH+ I +SR  ++++ +  AL+ MY++C  L DA  +
Sbjct: 219 SVRTFTSVLSACSNLGLLDQGRKIHALI-SSRGTELDLSLQNALLTMYARCKCLDDAAKI 277

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F R+  +DVV W++MI  +A      +A++ +++M    ++P+  TF  +L ACA  G +
Sbjct: 278 FQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDL 337

Query: 226 NEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             GR   +  + + Y I   + +   +V+L +  G ++EA  L  D     D  LW  L+
Sbjct: 338 RAGRAVHDQILGNGYKI--TLVNGTALVDLYTSYGSLDEARSL-FDQIENRDEGLWTVLI 394

Query: 285 GACRLHGN 292
           G     G+
Sbjct: 395 GGYSKQGH 402



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 6/253 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +LT YA+   +  A  +F  +  +DVV W+ MI  +A+  L +EA+  + +M  E V PN
Sbjct: 261 LLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPN 320

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +VL AC  +G L +GR +H  I  +   K+ +  GTAL+++Y+  GSL +AR +F
Sbjct: 321 YYTFASVLLACASVGDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLF 379

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLV 225
           D++ ++D  +W  +I GY+  G     L+L+ EM      P + I +  ++SACA  G  
Sbjct: 380 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 439

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            + R+  + ++ +  I   V     +VN+ SR G +E A + V D     D++ W TL+ 
Sbjct: 440 ADARQAHSDIEADGMISDFVLATS-LVNMYSRWGNLESA-RQVFDKMSSRDTLAWTTLIA 497

Query: 286 ACRLHGN--IALG 296
               HG   +ALG
Sbjct: 498 GYAKHGEHGLALG 510



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 36/222 (16%)

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           A  Q   LES R IH  I  + +   NV +G  ++  Y KCGS+  AR  FD +  K+  
Sbjct: 33  ALRQCQDLESVRQIHDRISGAAS--ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDY 90

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF--- 232
            W SM+  YA +G  + AL L+    R+ L+P+ + +  +L ACA    + EG+      
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYK---RMDLQPNPVVYTTVLGACASIKALEEGKAIHSRI 147

Query: 233 -------------NTMKDEYA----IEP-----------KVEHYGCMVNLLSRAGQVEEA 264
                        N++   YA    +E             V  +  M+   +++G  EEA
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEA 207

Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            +L  DM +EP    + ++L AC   G +  G KI   + S+
Sbjct: 208 IRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR 249



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  ++TSLV++Y+R G++ SA ++F  M  R  ++ TT++  YAK GE            
Sbjct: 457 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGE------------ 504

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                           HGL   AL L++ M  E  EP+E+T + VL AC   G  E G+ 
Sbjct: 505 ----------------HGL---ALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQ 545

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           +   I++   +  N+   + +I++ S+ G L DA  + + +  + + V W+S++    +H
Sbjct: 546 LFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIH 605

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              K A     ++   +L P D     LLS
Sbjct: 606 KDVKRATHAAGQI--TKLDPVDPASYVLLS 633


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 277/435 (63%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +++ YA+ G    A + F+ ++ KD + WN +I G+AQ G   EAL +F +M    VE 
Sbjct: 556 ALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEA 615

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T  + +SA      ++ G+ IH+ +  +       +    LI +YSKCGS++DA+  
Sbjct: 616 NLFTFGSAVSATANTANIKQGKQIHAMMIKT-GYDSETEASNVLITLYSKCGSIEDAKRE 674

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  + +K+VV WN+MI GY+ HG+G +A+ LF EM ++ L P+ +TF+G+LSAC+H GLV
Sbjct: 675 FFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLV 734

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           NEG  +F +M  E+ + PK EHY C+V+LL RA  +  A + + +M IEPD+++W TLL 
Sbjct: 735 NEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLS 794

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC +H NI +GE  A +L+     +S TYVLLSN+YA  G WD   R R +MK++GV+KE
Sbjct: 795 ACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKE 854

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IE+ N +H F  GD  HP +++IY  ++++N      GYV     +L+D+ ++QK
Sbjct: 855 PGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQK 914

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             +  +HSEKLAVAFGL+S      I+++KNLRVC DCH   K +SK + R I++RD  R
Sbjct: 915 DPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYR 974

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G CSC DYW
Sbjct: 975 FHHFEGGVCSCKDYW 989



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 171/309 (55%), Gaps = 15/309 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YAK GE+  AR +   + E+DVV W  MI GY QH L  EAL LF+ M  + + 
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIR 513

Query: 105 PNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            + +   + +SAC  I AL  G+ IH  SYI        ++ +G AL+++Y++CG  +DA
Sbjct: 514 SDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSE---DLSIGNALVSLYARCGRAQDA 570

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
            L F++++ KD + WN++I G+A  G  ++ALQ+F++M +  ++ +  TF   +SA A+ 
Sbjct: 571 YLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANT 630

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
             + +G++  + M  +   + + E    ++ L S+ G +E+A +   +M  E + V W  
Sbjct: 631 ANIKQGKQ-IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNA 688

Query: 283 LLGACRLHG----NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLM 337
           ++     HG     ++L E++ +  +   + N  T+V + +  + +G   +G++  R++ 
Sbjct: 689 MITGYSQHGYGSEAVSLFEEMKQLGL---MPNHVTFVGVLSACSHVGLVNEGLSYFRSMS 745

Query: 338 KEKGVQKEP 346
           KE G+  +P
Sbjct: 746 KEHGLVPKP 754



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 170/355 (47%), Gaps = 43/355 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  +  DL +  SL+DLY +  D+ +A + F          LTT               
Sbjct: 341 IKMGMSSDLIIEGSLLDLYVKCFDIETAHEYF----------LTT--------------- 375

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                 E ++VV WNVM+  Y Q G  +E+  +F +M  E + PN+ T  ++L  C  +G
Sbjct: 376 ------ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G  IH+ +  S   + NV V + LI+MY+K G L  AR +  R+ ++DVV W +MI
Sbjct: 430 ALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMI 488

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYA 240
            GY  H    +AL+LF EM    ++  +I F   +SACA    +N+G++    +    Y+
Sbjct: 489 AGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYS 548

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALG 296
            +  + +   +V+L +R G+ ++AY L  +     D++ W  L+      G+    + + 
Sbjct: 549 EDLSIGN--ALVSLYARCGRAQDAY-LAFEKIDAKDNISWNALISGFAQSGHCEEALQVF 605

Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI 351
            ++ +  +  NL   G+ V   +  A   N     ++  +M + G   E   S++
Sbjct: 606 SQMNQAGVEANLFTFGSAV---SATANTANIKQGKQIHAMMIKTGYDSETEASNV 657



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 157/330 (47%), Gaps = 35/330 (10%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K G V  A+++F+ +  KD V W  MI G +Q+G  +EA++LF +M    V P 
Sbjct: 153 LIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPT 212

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                +VLSAC +I   + G  +H +I     +     V  AL+ +YS+ G+L  A  +F
Sbjct: 213 PYVFSSVLSACTKIELFKLGEQLHGFIVK-WGLSSETFVCNALVTLYSRWGNLIAAEQIF 271

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            +++ +D + +NS+I G A  GF   ALQLF +M    +KP  +T   LLSACA  G   
Sbjct: 272 SKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGY 331

Query: 227 EGRRFFNTM---------------------------KDEYAIEPKVEH---YGCMVNLLS 256
           +G++  + +                             EY +  + E+   +  M+    
Sbjct: 332 KGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYG 391

Query: 257 RAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSG 312
           + G + E+Y + + M+IE   P+   + ++L  C   G + LGE+I   +I      N  
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVY 451

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              +L ++YA  G  D    +   ++E+ V
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREEDV 481



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 137/263 (52%), Gaps = 3/263 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++T Y++ G + AA  +F  M  +D + +N +I G AQ G ++ AL LF +M  + ++P
Sbjct: 253 ALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKP 312

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT  ++LSAC  +GA   G+ +HSY+     +  ++ +  +L+++Y KC  ++ A   
Sbjct: 313 DCVTVASLLSACASVGAGYKGKQLHSYVIK-MGMSSDLIIEGSLLDLYVKCFDIETAHEY 371

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F     ++VV+WN M+V Y   G   ++  +F +M    L P+  T+  +L  C   G +
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + G +  +T   +   +  V     ++++ ++ G+++ A  ++  ++ E D V W  ++ 
Sbjct: 432 DLGEQ-IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIA 489

Query: 286 ACRLHGNIALGEKIAEYLISQNL 308
               H   A   K+ + + +Q +
Sbjct: 490 GYTQHDLFAEALKLFQEMENQGI 512



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 39/325 (12%)

Query: 24  GDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           G +L A+KL A + +       V  + ++  Y   GEV  A  LFDD+   +V  WN +I
Sbjct: 24  GSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVI 83

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-GQIGALESGRWIHSYIENSRN 138
            G     LA++ L LF  M+ E V P+E T  +VL AC G     +    IH+ I +   
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIH-HG 142

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
              +  V   LI++YSK G +  A+LVF+R+  KD V W +MI G + +G   +A+ LF 
Sbjct: 143 FGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFC 202

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYA--- 240
           +M +  + P+   F  +LSAC    L   G +                 N +   Y+   
Sbjct: 203 QMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWG 262

Query: 241 -------IEPKVEH-----YGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLG 285
                  I  K+       Y  +++ L++ G  + A +L   M+++   PD V   +LL 
Sbjct: 263 NLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLS 322

Query: 286 ACRLHGNIALGEKIAEYLISQNLAN 310
           AC   G    G+++  Y+I   +++
Sbjct: 323 ACASVGAGYKGKQLHSYVIKMGMSS 347



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 35/238 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D +   S  L+ LY++ G +  A++ F  MP++++VS   M+T Y++ G  + A 
Sbjct: 644 IKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAV 703

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF++M+               Q GL                 PN VT V VLSAC  +G
Sbjct: 704 SLFEEMK---------------QLGLM----------------PNHVTFVGVLSACSHVG 732

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +  G      +     +    +    ++++  +   L  AR   + +  + D ++W ++
Sbjct: 733 LVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTL 792

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           +    +H      +  F     + L+P D  T++ L +  A +G  +   R    MKD
Sbjct: 793 LSACTVH--KNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKD 848


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/436 (43%), Positives = 283/436 (64%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK   +  AR +FD + E+DVV    +I GYAQ GL  EAL LFR++ +E ++
Sbjct: 182 SSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQ 241

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT   +++A   + +L+ G+ +H+ I   + +   V +  +LI+MYSKCG L  +R 
Sbjct: 242 CNHVTFTTLVTALSGLASLDYGKQVHALILR-KELPFFVALQNSLIDMYSKCGKLLYSRR 300

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + ++ VV WN+M++GY  HG G + + LF ++ +  +KP  +T + +LS C+H GL
Sbjct: 301 VFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGL 359

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F+T+  E +      HYGC+++LL R+G++E+A  L+ +M  E    +WG+LL
Sbjct: 360 VDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLL 419

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H N+ +GE +A+ L+     N+G YV+LSNIYAA G W  V +VR LM EK V K
Sbjct: 420 GACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTK 479

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S I L   +H F + +  HP  K+I   ++EI   +KA G+VP    VLHD+ ++Q
Sbjct: 480 EPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQ 539

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+ FGL++T PG +I+++KNLR+C DCH   K +SK   R+I +RD+N
Sbjct: 540 KERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKN 599

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH   +G C+CGDYW
Sbjct: 600 RFHLLTHGNCTCGDYW 615



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A ++AC +  AL  GR +H+ +  +R  +  V +GT L+ MY +CG+L DAR V DR+ +
Sbjct: 47  AAITACIERRALWEGRQVHARMITAR-YRPAVFLGTRLVTMYVRCGALDDARNVLDRMPE 105

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           + VV W +MI GY+      +AL LF +M R    P++ T   +L++C+    + +G++ 
Sbjct: 106 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ- 164

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            +++  +   E  +     ++++ +++  ++EA + V D   E D V
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARR-VFDTLPERDVV 210


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/434 (43%), Positives = 276/434 (63%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   +  A  +F++    +++ +  MI   +Q     +A+ LF  ML + +EP+
Sbjct: 447 LIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPD 506

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                ++L+AC  + A E G+ +H+++   R    +V  G AL+  Y+KCGS++DA L F
Sbjct: 507 PFVLSSLLNACASLSAYEQGKQVHAHLIK-RKFMTDVFAGNALVYTYAKCGSIEDADLAF 565

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + DK VV W++MI G A HG GK AL +F  M   R+ P+ IT   +L AC HAGLV+
Sbjct: 566 SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVD 625

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E + +F++MK+ + I+   EHY CM++LL RAG++++A +LV  M  E ++ +WG LL A
Sbjct: 626 EAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAA 685

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            R+H +  LG+  AE L       SGT+VLL+N YA+ G WD VA+VR LMK+  V+KEP
Sbjct: 686 SRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEP 745

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
             S +EL ++VH F+ GD  HP++++IY  LEE+   +   GYVP  ++ LHD+ + +K+
Sbjct: 746 AMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKE 805

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LAVAF LIST  G  I++ KNLR+C DCH  FK ISK   R+I++RD NRF
Sbjct: 806 LLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 865

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSCGDYW
Sbjct: 866 HHFSDGACSCGDYW 879



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 134/279 (48%), Gaps = 7/279 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAK G +  AR +F+ +  KD++ WN +I G +  G   E+L LF RM  E  + 
Sbjct: 345 ALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDI 404

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T  AVL +   + A+     +H+  E    +  +  V   LI+ Y KC  L+ A  V
Sbjct: 405 NRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLS-DSHVVNGLIDSYWKCNCLRYANKV 463

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+  +  +++ + SMI   +    G+DA++LF EM R  L+P       LL+ACA     
Sbjct: 464 FEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAY 523

Query: 226 NEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +G++   + +K ++  +  V     +V   ++ G +E+A  L      +   V W  ++
Sbjct: 524 EQGKQVHAHLIKRKFMTD--VFAGNALVYTYAKCGSIEDA-DLAFSGLPDKGVVSWSAMI 580

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
           G    HG+      +   ++ + +A +  ++ L+++  A
Sbjct: 581 GGLAQHGHGKRALDVFRRMVDERIAPN--HITLTSVLCA 617



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 162/348 (46%), Gaps = 51/348 (14%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
            + + +   ++  Y+K G++  A ++F  + + DVV WN  I G   HG    AL L  +
Sbjct: 234 DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 98  MLAEKVEPNEVTAVAVLS--ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
           M +  + PN  T  ++L   A    GA   GR IH ++  +     +  +G AL++MY+K
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKA-CADSDDYIGVALVDMYAK 352

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI---TF 212
            G L DAR VF+ +  KD+++WN++I G +  G   ++L LF   CR+R + SDI   T 
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLF---CRMRKEGSDINRTTL 409

Query: 213 IGLLSACA-----------HA-----GLVNEGR---------------RFFNTMKDEYAI 241
             +L + A           HA     G +++                 R+ N + +E++ 
Sbjct: 410 AAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSS 469

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEK 298
           +  +  +  M+  LS+    E+A KL M+M    +EPD  +  +LL AC        G++
Sbjct: 470 DNIIA-FTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 528

Query: 299 IAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLMKEKGV 342
           +  +LI +      T V   N     YA  G+ +      + + +KGV
Sbjct: 529 VHAHLIKRKFM---TDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGV 573



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L+ Y+K     +AR +FD+  +   V W+ ++  Y+ + L  EAL  FR M A  V  N
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCN 102

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           E  A+ ++  C     L  G  +H+ +  S  +  ++ V  AL+ MY   G + +AR VF
Sbjct: 103 EF-ALPIVLKCAPDAGL--GVQVHA-VAVSTGLSGDIFVANALVAMYGGFGFVDEARRVF 158

Query: 167 DR-VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           D    D++ V WN M+  +  +    DA++LF EM    ++P++  F  +++AC  +  +
Sbjct: 159 DEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDL 218

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             GR+  + M      +  V     +V++ S+ G +  A  LV     + D V W   + 
Sbjct: 219 EAGRK-VHAMVVRTGYDKDVFTANALVDMYSKLGDIHMA-ALVFGKVPKTDVVSWNAFIS 276

Query: 286 ACRLHGN 292
            C LHG+
Sbjct: 277 GCVLHGH 283



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 127/251 (50%), Gaps = 9/251 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
             ++  Y   G V  AR +FD+   +++ V WN M+  + ++   ++A+ LF  M+   V
Sbjct: 139 NALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGV 198

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PNE     V++AC     LE+GR +H+ +  +   K +V    AL++MYSK G +  A 
Sbjct: 199 RPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDK-DVFTANALVDMYSKLGDIHMAA 257

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS--ACAH 221
           LVF +V   DVV WN+ I G  +HG  + AL+L  +M    L P+  T   +L   A A 
Sbjct: 258 LVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAG 317

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           AG    GR+    M    A     ++ G  +V++ ++ G +++A K V +     D +LW
Sbjct: 318 AGAFALGRQIHGFMIK--ACADSDDYIGVALVDMYAKYGLLDDARK-VFEWIPRKDLLLW 374

Query: 281 GTLLGACRLHG 291
             L+  C  HG
Sbjct: 375 NALISGCS-HG 384


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/443 (44%), Positives = 289/443 (65%), Gaps = 7/443 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            +++  YA  G + +A+ +FD M ++ +V WN MID +   G    AL LF +   +  E
Sbjct: 165 NSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFE 224

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINMYSKCGSLKD 161
           P+  T  +V++AC  + AL  G W H+++  +  + V   +V V  +L++MY KCGSL  
Sbjct: 225 PDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDI 284

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACA 220
           A  +F+ +   DV  WNSMI+G+AMHG G+ AL+ F  M RI R  P+ ITF+G+LSAC 
Sbjct: 285 ATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACN 344

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H  +VNEGR++F+ M +EY IEP++EHYGC+V++L+RAG ++EA +LV  M ++PD V+W
Sbjct: 345 HRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIW 404

Query: 281 GTLLGA-CRLHGNIALGEKIAEYLI-SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
            +LL + C+ + ++ L E IA  ++ S+   +SG YVLLS +YA+   W+ V  VR LM 
Sbjct: 405 RSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMT 464

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVL 397
             G+ KEPGCS IE+    HEF AGD  HP++KEIY +L  +   + + GY P  +Q  +
Sbjct: 465 NNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPM 524

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
            D     K++SL +HSE+LA+A GL++ +PG  I+I KNLRVC DCH V  LIS+    +
Sbjct: 525 VDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVE 584

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RDR RFHHF +G+CSC DYW
Sbjct: 585 IIVRDRVRFHHFKDGSCSCMDYW 607



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 147/299 (49%), Gaps = 12/299 (4%)

Query: 27  LSAEKLFATMPQRSL-VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           + A  L +T+P  S  + L + +  ++   ++  A  +FD ++  +   WN++I   AQ 
Sbjct: 41  IHALSLRSTLPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQS 100

Query: 86  G---LANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
               L  EA++L+  ML      P+  T   VL AC  + AL  G+  H+++      + 
Sbjct: 101 QSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLK-LGFQS 159

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V +  +LI+ Y+ CGSL+ A+ VFD++  + +V WN+MI  + + G  + ALQLF +  
Sbjct: 160 DVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQ 219

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY---GCMVNLLSRA 258
           +   +P   T   +++ACA    ++ G      +     +    +H      ++++  + 
Sbjct: 220 QQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKC 279

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL--ISQNLANSGTYV 315
           G ++ A ++   M+ + D   W +++    +HG   L  +  E +  IS+ + NS T+V
Sbjct: 280 GSLDIATQIFEGMQ-KHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFV 337


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/436 (43%), Positives = 283/436 (64%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK   +  AR +FD + E+DVV    +I GYAQ GL  EAL LFR++ +E ++
Sbjct: 150 SSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQ 209

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT   +++A   + +L+ G+ +H+ I   + +   V +  +LI+MYSKCG L  +R 
Sbjct: 210 CNHVTFTTLVTALSGLASLDYGKQVHALILR-KELPFFVALQNSLIDMYSKCGKLLYSRR 268

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD + ++ VV WN+M++GY  HG G + + LF ++ +  +KP  +T + +LS C+H GL
Sbjct: 269 VFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVTLLAVLSGCSHGGL 327

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F+T+  E +      HYGC+++LL R+G++E+A  L+ +M  E    +WG+LL
Sbjct: 328 VDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLL 387

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H N+ +GE +A+ L+     N+G YV+LSNIYAA G W  V +VR LM EK V K
Sbjct: 388 GACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTK 447

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S I L   +H F + +  HP  K+I   ++EI   +KA G+VP    VLHD+ ++Q
Sbjct: 448 EPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQ 507

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+ FGL++T PG +I+++KNLR+C DCH   K +SK   R+I +RD+N
Sbjct: 508 KERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKN 567

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH   +G C+CGDYW
Sbjct: 568 RFHLLTHGNCTCGDYW 583



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A ++AC +  AL  GR +H+ +  +R  +  V +GT L+ MY +CG+L DAR V DR+ +
Sbjct: 15  AAITACIERRALWEGRQVHARMITAR-YRPAVFLGTRLVTMYVRCGALDDARNVLDRMPE 73

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           + VV W +MI GY+      +AL LF +M R    P++ T   +L++C+    + +G++ 
Sbjct: 74  RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ- 132

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            +++  +   E  +     ++++ +++  ++EA + V D   E D V
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARR-VFDTLPERDVV 178


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 182/429 (42%), Positives = 282/429 (65%), Gaps = 2/429 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + +L  Y + G +  A+++FD +E ++ V WN +I G+A+     +AL LF+ ML +   
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 259

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  +  ++  AC   G LE G+W+H+Y+  S   K+    G  L++MY+K GS+ DAR 
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE-KLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FDR+  +DVV WNS++  YA HGFGK+A+  F EM R+ ++P++I+F+ +L+AC+H+GL
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           ++EG  ++  MK +  I P+  HY  +V+LL RAG +  A + + +M IEP + +W  LL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR+H N  LG   AE++   +  + G +V+L NIYA+ G W+  ARVR  MKE GV+K
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP CS +E+ N +H F+A D RHP+ +EI    EE+   +K  GYVP T  V+  + +++
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++ +L+ HSEK+A+AF L++T PG++I I KN+RVC DCH   KL SK  GR+I++RD N
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617

Query: 465 RFHHFVNGT 473
           RFHHF + +
Sbjct: 618 RFHHFKDAS 626



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 137/261 (52%), Gaps = 5/261 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           +  ++ +  +V   T+L  YAK G +  AR +F+ M ++D V W  +I GY+QH    +A
Sbjct: 86  ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           L+ F +ML     PNE T  +V+ A         G  +H +         NV VG+AL++
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLD 204

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           +Y++ G + DA+LVFD +  ++ V WN++I G+A     + AL+LF  M R   +PS  +
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMD 270
           +  L  AC+  G + +G+     M    + E  V   G  ++++ +++G + +A K + D
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIK--SGEKLVAFAGNTLLDMYAKSGSIHDARK-IFD 321

Query: 271 MKIEPDSVLWGTLLGACRLHG 291
              + D V W +LL A   HG
Sbjct: 322 RLAKRDVVSWNSLLTAYAQHG 342



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 49/255 (19%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C     L  GR +H++I  S   + ++ +G  L+NMY+KCGSL++AR VF+++  +
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA--------CAHA-- 222
           D V W ++I GY+ H    DAL  FN+M R    P++ T   ++ A        C H   
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184

Query: 223 -------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
                                    GL+++ +  F+ ++    +      +  ++   +R
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHAR 239

Query: 258 AGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANS 311
               E+A +L   M      P    + +L GAC   G +  G+ +  Y+I      +A +
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 312 GTYVLLSNIYAAIGN 326
           G  +L  ++YA  G+
Sbjct: 300 GNTLL--DMYAKSGS 312



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 36/229 (15%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +   +L+D+YA+ G +  A K+F  + +R +VS  ++LT Y                   
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY------------------- 338

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
                       AQHG   EA+  F  M    + PNE++ ++VL+AC   G L+ G W +
Sbjct: 339 ------------AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHY 385

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
             +     I         ++++  + G L  A R + +   +    +W +++    MH  
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH-- 443

Query: 190 GKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKD 237
               L  +       L P D    + L +  A  G  N+  R    MK+
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKE 492


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/483 (41%), Positives = 297/483 (61%), Gaps = 13/483 (2%)

Query: 7   DKDLYVST------SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           DK  +V+T      +L DL  R G ++ +  L A +   ++V+ T ++  Y K G +  A
Sbjct: 9   DKICFVATLNACGGALADL--RLGKLIHSCVLEAGLESNTVVA-TALVNMYGKAGCLDEA 65

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVEPNEVTAVAVLSAC 117
             +F  +E KD+V W  ++  Y++  L  EAL LFR M     +  +P+      +L AC
Sbjct: 66  TRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQAC 125

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + A   GR  H  I+       +  +G  +INMY KCG+L+ A  VFD ++++D V W
Sbjct: 126 ATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAW 185

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            ++I GYA HG  +++L +F  M +   KP  ++ + +LS C+HAGLV +G  FF  +  
Sbjct: 186 TTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK 245

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           E+ +EP  +HYGCM++LL R+G +E A  ++  M  +  ++ W   L AC++H +   G+
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGK 305

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           + AE ++      +  YV LSNIYAA G WD V RVR+ MK  G+QK+PG SSIE++++V
Sbjct: 306 RAAEKVLELEPVPA-AYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRV 364

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEF AGD  HP++ EIY +LE +   ++  GYVP T++VL ++ E+QK+  L  HSEKLA
Sbjct: 365 HEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHSEKLA 424

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL+ST  G+S++I+KNLRVC DCH   K +S+  GR+I MRD  RFHHF +G CSCG
Sbjct: 425 IAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHCSCG 484

Query: 478 DYW 480
           DYW
Sbjct: 485 DYW 487


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 286/445 (64%), Gaps = 10/445 (2%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q SL+S+      Y K GE+     +F+ M E+ V  W+ +I  +A  G+ ++ L L   
Sbjct: 169 QNSLISM------YGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 222

Query: 98  MLAEKV-EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK-VNVQVGTALINMYSK 155
           M  E      E   V+VLSAC  +GAL+ GR +H ++   RN+  +NV V T+LI MY K
Sbjct: 223 MSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFL--LRNVSGLNVIVETSLIEMYLK 280

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CGSL     +F ++  K+ + ++ MI G AMHG+G++ L++F EM    L+P DI ++G+
Sbjct: 281 CGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGV 340

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L+AC+HAGLV EG + FN MK E+ IEP ++HYGCMV+L+ RAG+++EA +L+  M +EP
Sbjct: 341 LNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEP 400

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           + VLW +LL A ++H N+  GE  A+ L   +   +  YV+LSN+YA    W+ VA+ RT
Sbjct: 401 NDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRT 460

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M  KG+ + PG S +E+  K+H F++ D  HP+S+ +Y ML ++   LK EGY P T  
Sbjct: 461 NMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQ 520

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VL D+ E++K+  L  HS+KLA+A+ LI T  G+ I+IV+NLR+C DCH   KLIS    
Sbjct: 521 VLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFD 580

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I +RDR+RFHHF +G CSC DYW
Sbjct: 581 REITVRDRHRFHHFKDGACSCRDYW 605



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 35/276 (12%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G +  A  +F  M+E     +N M+ G+ +     EAL+ ++ M    V+P+  T   +L
Sbjct: 79  GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 138

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            AC ++ A+E G  +H++I     ++ +V V  +LI+MY KCG +     VF+++N++ V
Sbjct: 139 KACARLPAVEEGMQVHAHILK-LGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 197

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRF-- 231
             W+++I  +A  G   D L+L  +M      +  +   + +LSAC H G ++ GR    
Sbjct: 198 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 232 --------FNTMKDEYAIEPKVE--------------------HYGCMVNLLSRAGQVEE 263
                    N + +   IE  ++                     Y  M++ L+  G   E
Sbjct: 258 FLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317

Query: 264 AYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALG 296
             ++  +M    +EPD +++  +L AC   G +  G
Sbjct: 318 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 353



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           S  GS+  A  +F ++++     +N+M+ G+      ++AL  + EM    +KP + T+ 
Sbjct: 76  SDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYP 135

Query: 214 GLLSACAHAGLVNEG 228
            LL ACA    V EG
Sbjct: 136 TLLKACARLPAVEEG 150


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/468 (43%), Positives = 287/468 (61%), Gaps = 3/468 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           ++V  +A  GD+ +AE+ F   P++   V  T M++ Y   G V  A   F+ M  +++V
Sbjct: 147 AMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLV 206

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
            WN ++ GY ++  A++AL LFR M+ E  V+PN  T  +VL  C  + AL  G+ IH +
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                 +  N+ VGT+L++MY KCG L  A ++F  ++ +DVV WN+MI GYA HG GK+
Sbjct: 267 CMKLL-LSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+ LF  M    ++P+ ITF+ +L+AC H GL + G + F  M++ Y IEP+V+HY CMV
Sbjct: 326 AINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMV 385

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
           +LL RAG++E A   +  M  EP    +GTLL ACR++ N+   E  A  LI ++  ++G
Sbjct: 386 DLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAG 445

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKE 372
            YV L+NIYA    WD V+RVR  MK+  V K PG S IE+   +HEF + D  HP+   
Sbjct: 446 AYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYL 505

Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
           I+  L ++   +K  GYVP    VLHD+ E  K   L  HSEKLA+AFGLIST  G +++
Sbjct: 506 IHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLR 565

Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           I KNLRVC DCH   K+IS    R+I++RD  RFHHF  G CSC DYW
Sbjct: 566 IFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 46/309 (14%)

Query: 20  YARG-GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
           YAR  G +  A  LF  +P   +VS  T+L C+   G+   AR LF  M  +DV  WN M
Sbjct: 58  YARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTM 117

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG-RWIHSYIENSR 137
           + G ++ G   EA V+F   LA  V  N V+  A++S     G + +   W  +  E   
Sbjct: 118 VSGLSKSGAVEEAKVVF---LAMPVR-NSVSWNAMVSGFACSGDMSTAEEWFRNAPE--- 170

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
             K +  + TA+++ Y   G++  A   F+ +  +++V WN+++ GY  +    DAL+LF
Sbjct: 171 --KEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLF 228

Query: 198 NEMCR-IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
             M R   ++P+  T   +L  C++   +  G++                H  CM  LLS
Sbjct: 229 RTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI---------------HQWCMKLLLS 273

Query: 257 R--------------AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN----IALGEK 298
           R               G +  A  L  +M    D V W  ++     HG+    I L E+
Sbjct: 274 RNLTVGTSLVSMYCKCGDLSSACILFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFER 332

Query: 299 IAEYLISQN 307
           + +  +  N
Sbjct: 333 MKDEGVEPN 341



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L ++L V TSLV +Y + GD+ SA  LF  M  R +V+   M++ YA+        
Sbjct: 268 MKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQ-------- 319

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                  HG   EA+ LF RM  E VEPN +T V VL+AC   G
Sbjct: 320 -----------------------HGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTG 356

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             + G      ++    I+  V   + ++++  + G L+ A
Sbjct: 357 LCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 26/217 (11%)

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L DAR +FDR+   DVV +N++++ +   G    A +LF  M  +R   S  T +  L
Sbjct: 63  GRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASM-PVRDVASWNTMVSGL 121

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           S    +G V E +  F  M    ++      +  MV+  + +G +  A +   +   + D
Sbjct: 122 S---KSGAVEEAKVVFLAMPVRNSVS-----WNAMVSGFACSGDMSTAEEWFRNAPEKED 173

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV--LLSNIYAAIGNWDGVARVR 334
           +VLW  ++      GN+    K  E +  +NL +    V   + N +A     D +   R
Sbjct: 174 AVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHAD----DALRLFR 229

Query: 335 TLMKEKGVQKEP--------GCSSIE---LSNKVHEF 360
           T+++E  VQ           GCS++       ++H++
Sbjct: 230 TMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/374 (47%), Positives = 261/374 (69%), Gaps = 1/374 (0%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V   ++++Y + G++++A+K+F  MP R  V+ T M+ CY++ G +  A  LF D++ KD
Sbjct: 160 VGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKD 219

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
            VCW  MIDG  ++   N+AL LFR M  E V  NE TAV VLSAC  +GALE GRW+HS
Sbjct: 220 TVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHS 279

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           ++EN R ++++  VG ALINMYS+CG + +AR VF  + DKDV+ +N+MI G AMHG   
Sbjct: 280 FVENQR-MELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASV 338

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           +A+  F +M     +P+ +T + LL+AC+H GL++ G   FN+MK  + +EP++EHYGC+
Sbjct: 339 EAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCI 398

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
           V+LL R G++EEAY+ + ++ IEPD ++ GTLL AC++HGN+ LGEKIA+ L      +S
Sbjct: 399 VDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDS 458

Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
           GTYVLLSN+YA+ G W     +R  M++ G++KEPGCS+IE+ N++HEFL GD+ HP  +
Sbjct: 459 GTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKE 518

Query: 372 EIYMMLEEINGWLK 385
            IY  L+E+N  L+
Sbjct: 519 AIYQRLQELNRILR 532



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 41/280 (14%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F  +   +V  +  MIDG+   G + + + L+ RM+   V P+     +VL AC     
Sbjct: 83  VFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD---- 138

Query: 123 LESGRWIHSYI-----ENSRNIKVNVQ-------------------------VGTALINM 152
           L+  R IH+ +      +SR++ + +                            T +IN 
Sbjct: 139 LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINC 198

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
           YS+CG +K+A  +F  V  KD V W +MI G   +     AL+LF EM    +  ++ T 
Sbjct: 199 YSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTA 258

Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           + +LSAC+  G +  G R+ ++  +   +E        ++N+ SR G + EA ++   M+
Sbjct: 259 VCVLSACSDLGALELG-RWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMR 317

Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            + D + + T++    +HG  A  E I E+   +++ N G
Sbjct: 318 -DKDVISYNTMISGLAMHG--ASVEAINEF---RDMVNRG 351


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/479 (39%), Positives = 295/479 (61%), Gaps = 16/479 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           + F L+ D Y+ +SLV++Y + G +  A  +   +P   L      +TC   +  +    
Sbjct: 293 LTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARM---- 348

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                      V W+ M+ GY  +G   + +  FR M+ E +  +  T   ++SAC   G
Sbjct: 349 -----------VSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAG 397

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            LE G+ IH+YI+    ++++  VG++LI+MYSK GSL DA ++F+++ + +VV+W SMI
Sbjct: 398 ILEFGKQIHAYIQKI-GLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMI 456

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G A+HG GK+A+ LF  M  + + P+++TF+G+L+AC+H GL+ EG R+F  MKD Y I
Sbjct: 457 SGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHI 516

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P+VEHY  MVNL  RAG + EA   + +  I   + +W + L +CRLH N  +G+ ++E
Sbjct: 517 NPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSE 576

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L+    ++   Y+LLSN+ ++   WD  A VR+LM ++GV+K+PG S ++L +++H F 
Sbjct: 577 MLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFT 636

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            GD  HP+ KEIY  L+ + G LK  GY    ++V+ D+ E+Q +  +  HSEKLA+ F 
Sbjct: 637 VGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFS 696

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +I+T P T I+I+KNLR+C DCH  FK  S+   R+I++RD +RFHHF   +CSCG+YW
Sbjct: 697 IINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 174/354 (49%), Gaps = 32/354 (9%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+ +  S++DLY +  +   AE  F  M ++ +VS   M+  Y ++G+V  +  +F +  
Sbjct: 168 DVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFP 227

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
            KDVV WN +IDG  Q G    AL     M+A   E + VT    L     +  +E GR 
Sbjct: 228 NKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQ 287

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGS-------LKDARLVFDRVNDKDV------- 174
           +H  +  +  +  +  + ++L+ MY KCG        LKD  L F R  +  V       
Sbjct: 288 LHGRVL-TFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKA 346

Query: 175 --VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRF 231
             V W+SM+ GY  +G  +D ++ F  M    L   DI T   ++SACA+AG++  G++ 
Sbjct: 347 RMVSWSSMVSGYVWNGKYEDGMKTFRSMV-CELIVVDIRTVATIISACANAGILEFGKQI 405

Query: 232 FNTMKDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
              ++    I  +++ Y    ++++ S++G +++A  +   +K EP+ VLW +++  C L
Sbjct: 406 HAYIQK---IGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCAL 461

Query: 290 HGN----IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           HG     I+L E +    I   + N  T+V + N  + +G  +   R   +MK+
Sbjct: 462 HGQGKEAISLFEGMLNLGI---IPNEVTFVGVLNACSHVGLIEEGCRYFRMMKD 512



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE-ALVLFRRML 99
           L S   +LT Y K   +  A  LFD++  K+   W ++I G+A+   ++E    LFR M 
Sbjct: 67  LNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQ 126

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           A+   PN+ T  +VL  C +   ++ G+ IH++I  +  +  +V +  +++++Y KC   
Sbjct: 127 ADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRN-GVGGDVVLENSILDLYLKCKEF 185

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           + A   F+ + +KDVV WN MI  Y   G  + +L++F
Sbjct: 186 EYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMF 223


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 271/435 (62%), Gaps = 2/435 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y + GE   +  LF  +E+KD+V W  MI+    +G  N A+ LF  M    ++P+
Sbjct: 508 LIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPD 567

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            V  V++L A   + +L  G+ +H ++   RN  +   V ++L++MYS CGS+  A  VF
Sbjct: 568 SVALVSILVAIAGLSSLTKGKQVHGFLIR-RNFPIEGPVVSSLVDMYSGCGSMNYAIRVF 626

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +R   KDVV+W +MI    MHG GK A+ LF  M +  L P  ++F+ LL AC+H+ LV 
Sbjct: 627 ERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVE 686

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+ + + M  +Y ++P  EHY C+V++L R+GQ EEAY+ +  M ++P S +W  LLGA
Sbjct: 687 EGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGA 746

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H N  L    A  L+     N G Y+L+SN++A +G W+     RT M E+G++K P
Sbjct: 747 CRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNP 806

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQK 405
            CS IE+ N +H F +GD  H  S+ I++ L EI   L+ E GYV  T+ VLHD  E++K
Sbjct: 807 ACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEK 866

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
            + L  HSE++A+AFGLIST+PG  I+I KNLRVC DCH   KL+SK   R I++RD NR
Sbjct: 867 IDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANR 926

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G+CSC D+W
Sbjct: 927 FHHFSGGSCSCEDFW 941



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 165/361 (45%), Gaps = 64/361 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK  LDK   V+ +L+ +YA+ G + SA ++F  + Q                      
Sbjct: 190 AVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQ---------------------- 227

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                  + +DV  WN ++ G  Q+G   EAL LFR M +     N  T+VAVL  C ++
Sbjct: 228 -------DARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAEL 280

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
           G L  GR +H+ +    + ++N+Q   AL+ MY+K G +  A  VF ++ +KD + WNSM
Sbjct: 281 GLLSLGRELHAALLKCGS-ELNIQC-NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSM 338

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-------- 232
           +  Y  + F  +A+  F EM +   +P     + L SA  H   +N GR F         
Sbjct: 339 LSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRL 398

Query: 233 -------NTMKDEY----AIEPKVEHYGCM-----------VNLLSRAGQVEEAYKLVMD 270
                  NT+ D Y    +IE   + +  M           +   +++ +  EA +++++
Sbjct: 399 HTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILE 458

Query: 271 MKIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
           ++ E    DS++ G++L  C    +I+L +++  Y I   L +      L +IY   G +
Sbjct: 459 LQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEF 518

Query: 328 D 328
           D
Sbjct: 519 D 519



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 151/334 (45%), Gaps = 34/334 (10%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           +    +L  YAK G V +A  +F  + EKD + WN M+  Y Q+    EA+  F  ML  
Sbjct: 302 IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQH 361

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
             +P+    V++ SA G +  L +GR  H+Y    R +  ++QVG  L++MY KCGS++ 
Sbjct: 362 GFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQR-LHTDLQVGNTLMDMYIKCGSIEC 420

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA- 220
           +  VF+ +  +D + W +++  +A      +AL++  E+ +  +    +    +L  C  
Sbjct: 421 SAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCG 480

Query: 221 ----------HAGLVNEGRR---FFNTMKDEYAIEPKVEH---------------YGCMV 252
                     H   +  G       N + D Y    + +H               +  M+
Sbjct: 481 LKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMI 540

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           N  +  G++  A  L  +M+   I+PDSV   ++L A     ++  G+++  +LI +N  
Sbjct: 541 NCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFP 600

Query: 310 NSGTYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
             G  V  L ++Y+  G+ +   RV    K K V
Sbjct: 601 IEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDV 634



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 9/245 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y + G V  AR LF+ M  + V  WN ++  Y   G A EA+ ++  M A    
Sbjct: 99  TKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAP 158

Query: 105 ---PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
              P+  T  +VL ACG  G    G  +H  +     +  +  V  ALI MY+KCG L  
Sbjct: 159 GSAPDGCTLASVLKACGAEGDGRCGGEVHG-LAVKVGLDKSTLVANALIGMYAKCGLLDS 217

Query: 162 ARLVFD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           A  VF+  + + +DV  WNS++ G   +G   +AL LF  M       +  T + +L  C
Sbjct: 218 ALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVC 277

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  GL++ GR     +  +   E  ++    +V + ++ G+V+ A + V     E D + 
Sbjct: 278 AELGLLSLGRELHAALL-KCGSELNIQCNALLV-MYAKYGRVDSALR-VFGQIAEKDYIS 334

Query: 280 WGTLL 284
           W ++L
Sbjct: 335 WNSML 339



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 97  RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY--IENSRNIKVNVQVGTALINMYS 154
           R L  +  P       VL       A   GR +H++     S N   +  + T L+ MY 
Sbjct: 47  RQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYG 106

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM---CRIRLKPSDIT 211
           +CG + DAR +F+ +  + V  WN+++  Y   G   +A++++  M         P   T
Sbjct: 107 RCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCT 166

Query: 212 FIGLLSACAHAG 223
              +L AC   G
Sbjct: 167 LASVLKACGAEG 178


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/440 (43%), Positives = 283/440 (64%), Gaps = 5/440 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +V+ T++++ YAK G +  A  +F  M  ++ V W+ +I G+AQ+G A EAL LFR + A
Sbjct: 243 VVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQA 302

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           + ++P     V+ L AC  +G L+ G+ IH +I   R ++    +GTA+++MYSKCGSL+
Sbjct: 303 DGLQPCSWALVSALLACASVGFLKLGKSIHGFI--LRRLEWQCILGTAVLDMYSKCGSLE 360

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            AR +F++++ +D+V+WN++I     HG G DAL LF E+    +KP   TF  LLSA +
Sbjct: 361 SARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALS 420

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F+ M  E+ IEP  +HY C+V+LL+R+G VEEA  ++  M+ EP   +W
Sbjct: 421 HSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIW 480

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LL  C  +  + LGE IA+ ++     + G   L+SN+YAA   WD V  +R LMK+ 
Sbjct: 481 VILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDS 540

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PG S IE+    H F+  D  HP+ +EI  M+ ++N  ++  GYVP+T+ V HD+
Sbjct: 541 GSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDL 600

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E Q    L  HSE+LA+AFGL++T PGT + I+KNLRVC DCH   K ISK   R+I++
Sbjct: 601 DEDQL---LSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVV 657

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF +G CSCGDYW
Sbjct: 658 RDAKRFHHFKDGACSCGDYW 677



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 134/275 (48%), Gaps = 8/275 (2%)

Query: 21  ARGGDVLSAE----KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR GD+ +AE    + FA      +   + +L  Y++ G +  A  +FD M  KD V W+
Sbjct: 118 ARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWS 177

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
            M+ G+   G   EAL ++ RM    V  +EV  V V+ AC   G    G  +H  +   
Sbjct: 178 TMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLR- 236

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             ++++V   T+L++MY+K G L  A  VF  +  ++ V W+++I G+A +G   +AL L
Sbjct: 237 HCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDL 296

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F E+    L+P     +  L ACA  G +  G+     +     +E +      ++++ S
Sbjct: 297 FRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR--LEWQCILGTAVLDMYS 354

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           + G +E A KL   +    D VLW  ++  C  HG
Sbjct: 355 KCGSLESARKLFNKLS-SRDLVLWNAIIACCGTHG 388



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WN ++  +++ G    AL +FR  L     PN  T    L+AC ++G L++   +     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFR-ALPSSARPNSTTFTLTLTACARLGDLDAAESVRVR-A 133

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
            +     +V V +AL+++YS+CG++++A  VFD +  KD V W++M+ G+   G   +AL
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193

Query: 195 QLFNEMCRIRLKPSDITFIGLLSAC-----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
            +++ M    +   ++  +G++ AC     A  G    GR   + M+ +           
Sbjct: 194 AMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTS----- 248

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            +V++ ++ G ++ A ++   M    D V W  L+
Sbjct: 249 -LVSMYAKNGHLDVACQVFRMMPYRND-VTWSALI 281



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 90/209 (43%), Gaps = 38/209 (18%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           + T+++D+Y++ G + SA KLF  +  R LV                             
Sbjct: 345 LGTAVLDMYSKCGSLESARKLFNKLSSRDLV----------------------------- 375

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
              WN +I     HG  ++AL LF+ +    ++P+  T  ++LSA    G +E G++   
Sbjct: 376 --LWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFD 433

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMHGFG 190
            +     I+   +    ++++ ++ G +++A  ++     +  + +W  ++ G       
Sbjct: 434 RMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGC----LN 489

Query: 191 KDALQLFNEMCR--IRLKPSDITFIGLLS 217
              L+L   + +  + L+P DI  + L+S
Sbjct: 490 NKKLELGETIAKKILELRPEDIGVLALVS 518


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 306/489 (62%), Gaps = 11/489 (2%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK      + V  +L+D+Y + G V   +++F  + ++S+VS T +L    K   +   
Sbjct: 137 AVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRG 196

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQ 119
           R +FD+M E++VV W +M+ GY   G   E L L   M+       N VT  ++LSAC Q
Sbjct: 197 REVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQ 256

Query: 120 IGALESGRWIHSY------IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
            G L  GRW+H Y      +         V VGTAL++MY+KCG++  +  VF  +  ++
Sbjct: 257 SGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRN 316

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           VV WN++  G AMHG G+  + +F EM R  +KP D+TF  LLSAC+H G+V+EG R F+
Sbjct: 317 VVTWNALFSGLAMHGKGRMVIDMFPEMVR-EVKPDDLTFTALLSACSHLGMVDEGWRCFH 375

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           +++  Y +EPKV+HY CMV++L RAG++EEA  L+ +M + P+ V+ G+LLG+C +HG +
Sbjct: 376 SLQF-YGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKL 434

Query: 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353
            + E+I   LI  +  ++   +L+SN+Y A G  D    +R  ++ +G++K PG SSI +
Sbjct: 435 EIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYV 494

Query: 354 SNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ-TQIVLHDIGE-KQKQNSLEV 411
           ++ VH F +GD  HP++KE+Y+ L E+   +++ GYVP  + +V    G+ ++K+ +L  
Sbjct: 495 NDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCC 554

Query: 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVN 471
           HSEKLAV FGL+ T+P T + + KNLR+C DCH+  K++SK   R+I++RDRNRFH F  
Sbjct: 555 HSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKG 614

Query: 472 GTCSCGDYW 480
           G+CSC DYW
Sbjct: 615 GSCSCSDYW 623



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 134/320 (41%), Gaps = 69/320 (21%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+S +L   YA  G++ +A+KLF  +P                             + +K
Sbjct: 44  YLSNALFQFYASSGEIATAQKLFDEIP-----------------------------LSDK 74

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D V W  ++  +++ GL   ++ LF  M  ++VE + V+ V +   C ++  L  G   H
Sbjct: 75  DNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGH 134

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCG-------------------------------SL 159
             +        +V+V  AL++MY KCG                                L
Sbjct: 135 G-VAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGL 193

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSA 218
           K  R VFD + +++VV W  M+ GY   GF ++ L+L  EM  R     + +T   +LSA
Sbjct: 194 KRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSA 253

Query: 219 CAHAGLVNEGRRF-FNTMKDEYAIEPKVEHYGCM-----VNLLSRAGQVEEAYKLVMDMK 272
           CA +G +  GR      +K    +  +  + G M     V++ ++ G ++ + K+   M+
Sbjct: 254 CAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMR 313

Query: 273 IEPDSVLWGTLLGACRLHGN 292
            + + V W  L     +HG 
Sbjct: 314 -KRNVVTWNALFSGLAMHGK 332



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 112/296 (37%), Gaps = 76/296 (25%)

Query: 123 LESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNS 179
           L  GR +H+ +  S   K     +  AL   Y+  G +  A+ +FD +  +DKD V W +
Sbjct: 22  LHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTT 81

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA------------------- 220
           ++  ++  G   ++++LF EM R R++   ++ + L   CA                   
Sbjct: 82  LLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMG 141

Query: 221 ----------------HAGLVNEGRRFFNTMKDEYAI----------------------- 241
                             G V+E +R F  ++++  +                       
Sbjct: 142 FLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFD 201

Query: 242 ---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP----DSVLWGTLLGACRLHGNIA 294
              E  V  +  MV     AG   E  +L+ +M        + V   ++L AC   GN+ 
Sbjct: 202 EMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLV 261

Query: 295 LGEKIAEYLISQN--LANSGTY------VLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +G  +  Y + +   +    TY        L ++YA  GN D   +V  LM+++ V
Sbjct: 262 IGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNV 317


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 297/476 (62%), Gaps = 3/476 (0%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D D+ V +SLVD+YA+ G    A  +F ++  ++ VS T ML+ YA+ G    A  LF 
Sbjct: 136 VDDDV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFL 194

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALE 124
               +++  W  +I G  Q G   +   +F  M  E V+  + +   +V+ AC  +  L 
Sbjct: 195 RTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLG 254

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G+ IH  +  S   +  + +  AL++MY+KC  +  AR VF+R+  +DVV W S+IVG 
Sbjct: 255 LGKQIHGLVIGS-GYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGA 313

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
           A HG  K+AL L+++M    +KP+++TF+GL+ AC+HAGLV++GR+ F  M ++Y I P 
Sbjct: 314 AQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPS 373

Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
           ++ + C ++LLSR+G + EA  L+  M  +PD   W  LL AC+ HGN  +G +IA+ L+
Sbjct: 374 LQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLL 433

Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
           S N+    TYVLLSN+YA  G W+ ++RVR LM +  V+++PG SSI+L  +   F AG+
Sbjct: 434 SLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGE 493

Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
             HP   EI+ +L+E++  ++  GY+P T  VLHD+ E++K+  L  HSE+ AVA+GL+ 
Sbjct: 494 TCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLK 553

Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             PGT I+IVKNLR+C DCH   KL S    ++I++RD  R+HHF +G CSC D+W
Sbjct: 554 AVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 12/218 (5%)

Query: 27  LSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82
           L+A+K+ A + +  L        T+L  Y K   +  A  LFD+M ++D V W  ++  Y
Sbjct: 19  LNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAY 78

Query: 83  AQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
            Q  L N+ L +F  M   ++++P+      +L AC  + +L  G+ +H+    S  +  
Sbjct: 79  NQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDD 138

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V V ++L++MY+KCG    AR VFD +  K  V W +M+ GYA  G   +A++LF    
Sbjct: 139 DV-VKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELF---- 193

Query: 202 RIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDE 238
            +R    ++ ++  L+S    +G   +G   F  M+ E
Sbjct: 194 -LRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRRE 230



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L  C +  A  + + IH+ I  S  +     +   L++ Y KC  L+DA  +FD +  +D
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKS-GLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRD 67

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFF 232
            V W S++  Y         L +F+ M    RL+P    +  LL ACA    +  G++  
Sbjct: 68  HVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQ-- 125

Query: 233 NTMKDEYAIEPKVEH---YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             +   + + P V+       +V++ ++ G +    + V D  +   SV W  +L 
Sbjct: 126 --VHARFVLSPFVDDDVVKSSLVDMYAKCG-LPSIARSVFDSILVKTSVSWTAMLS 178


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 277/436 (63%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  A  +F+ M ++ VV W+ M  GY Q+ +  +AL LFR+     ++
Sbjct: 204 TALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLK 263

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            ++    +V+ AC  + A+  G+ +++ +  S     N+ V ++LI+MY+KCG ++++  
Sbjct: 264 HDQFLMSSVICACAGLAAMIEGKQVNALLSKS-GFCSNIFVASSLIDMYAKCGGIEESYK 322

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  V  ++VV+WN+MI G + H    + + LF +M ++ L P+D+TF+ +LSAC H GL
Sbjct: 323 VFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGL 382

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +G+++F+ M  E+ + P V HY CMV+ LSRAGQ+ EAY L+  +     + +WG+LL
Sbjct: 383 VKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLL 442

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +CR HGN+ L E  A+ L      NSG Y+LLSN+YAA G WD VA++R L+KE  V+K
Sbjct: 443 ASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKK 502

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E G S IE+ +KVH F+ G+  HPK  EIY  L E+   L+  GY  +TQ  LH +GE  
Sbjct: 503 ERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESI 562

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           KQ  L  HSEKLA   GL+   P   I+I+KNLR+C DCH+  KL SKF  R +++RD N
Sbjct: 563 KQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTN 622

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG CSCGD+W
Sbjct: 623 RFHHFKNGCCSCGDFW 638



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 142/271 (52%), Gaps = 7/271 (2%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L++   ++  Y+K G V  AR +FD+M  + +V WN MI    Q+G  NEAL L  +M  
Sbjct: 99  LLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQR 158

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E    +E T  +VL AC    AL   + +H++   +  + +NV V TAL+++Y+KCG +K
Sbjct: 159 EGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAA-MDLNVFVATALLDVYAKCGLMK 217

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  VF+ + D+ VV W+SM  GY  +   + AL LF +     LK        ++ ACA
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
               + EG++  N +  +      +     ++++ ++ G +EE+YK+  D++ + + VLW
Sbjct: 278 GLAAMIEGKQ-VNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLW 335

Query: 281 GTLLGACRLHGN----IALGEKIAEYLISQN 307
             ++     H      + L EK+ +  +S N
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPN 366



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C +   L  G+  H+ I     +K ++     LINMYSKCGS+  AR VFD +  +
Sbjct: 70  ILKLCAKRKLLLQGKACHAQIL-LMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
            +V WN+MI     +G   +AL L  +M R     S+ T   +L ACA    ++E  +  
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC-QLL 187

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS--VLWGTL 283
           +    + A++  V     ++++ ++ G +++A  +   M   PD   V W ++
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESM---PDRSVVTWSSM 237


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/445 (43%), Positives = 285/445 (64%), Gaps = 10/445 (2%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q SL+S+      Y K GE+     +F+ M E+ V  W+ +I  +A  G+ ++ L L   
Sbjct: 126 QNSLISM------YGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGD 179

Query: 98  MLAEKV-EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIK-VNVQVGTALINMYSK 155
           M  E      E   V+VLSAC  +GAL+ GR +H ++   RN+  +NV V T+LI MY K
Sbjct: 180 MSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFL--LRNVSGLNVIVETSLIEMYLK 237

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L     +F ++  K+ + ++ MI G AMHG+G++ L++F EM    L+P DI ++G+
Sbjct: 238 CGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGV 297

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           L+AC+HAGLV EG + FN MK E+ IEP ++HYGCMV+L+ RAG+++EA +L+  M +EP
Sbjct: 298 LNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEP 357

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           + VLW +LL A ++H N+  GE  A+ L   +   +  YV+LSN+YA    W+ VAR RT
Sbjct: 358 NDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRT 417

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            M  KG+ + PG S +E+  K+H F++ D  HP+S+ +Y ML ++   LK EGY P T  
Sbjct: 418 NMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQ 477

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
           VL D+ E++K+  L  HS+KLA+A+ LI T  G+ ++IV+NLR+C DCH   KLIS    
Sbjct: 478 VLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFD 537

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I +RDR+RFHHF +G CSC DYW
Sbjct: 538 REITVRDRHRFHHFKDGACSCRDYW 562



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 35/276 (12%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114
           G +  A  +F  M+E     +N M+ G+ +     EAL+ ++ M    V+P+  T   +L
Sbjct: 36  GSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 95

Query: 115 SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
            AC ++ A+E G  +H++I     ++ +V V  +LI+MY KCG +     VF+++N++ V
Sbjct: 96  KACARLPAVEEGMQVHAHILK-LGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 154

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRF-- 231
             W+++I  +A  G   D L+L  +M      +  +   + +LSAC H G ++ GR    
Sbjct: 155 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 214

Query: 232 --------FNTMKDEYAIEPKVE--------------------HYGCMVNLLSRAGQVEE 263
                    N + +   IE  ++                     Y  M++ L+  G   E
Sbjct: 215 FLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 274

Query: 264 AYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALG 296
             ++  +M    +EPD +++  +L AC   G +  G
Sbjct: 275 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 310



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           S  GS+  A  +F ++++     +N+M+ G+      ++AL  + EM    +KP + T+ 
Sbjct: 33  SDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYP 92

Query: 214 GLLSACAHAGLVNEG 228
            LL ACA    V EG
Sbjct: 93  TLLKACARLPAVEEG 107


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 284/436 (65%), Gaps = 3/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  +AK GE   A  +FD+M   D + WN +I G+AQ+  ++ AL LF+RM      
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
             + T  +VL AC  +  LE G   H +I        ++ +  AL++MY KCGSL+DA  
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ---DLILNNALVDMYCKCGSLEDALR 314

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+++ ++DV+ W++MI G A +G+ ++AL+LF  M     KP+ IT +G+L AC+HAGL
Sbjct: 315 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGL 374

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + +G  +F +MK  Y I+P  EHYGCM++LL +AG++++A KL+ +M+ EPD+V W TLL
Sbjct: 375 LEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+  N+ L E  A+ +I+ +  ++GTY LLSNIYA    WD V  +RT M+++G++K
Sbjct: 435 GACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKK 494

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS IE++ ++H F+ GD  HP+  E+   L ++   L   GYVP+T  VL D+  +Q
Sbjct: 495 EPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQ 554

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            ++SL  HSEKLA+AFGL++      I+I KNLR+C DCH   KL SK   R I++R   
Sbjct: 555 MEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPI 614

Query: 465 RFHHFVNGTCSCGDYW 480
           R+HHF +G CSCGDYW
Sbjct: 615 RYHHFQDGKCSCGDYW 630



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 147/318 (46%), Gaps = 29/318 (9%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K   +  A  LFD M +++V+ W  MI  Y++  +  +AL L   ML + V
Sbjct: 99  VNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV 158

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            PN  T  +VL +C     +   R +H  I     ++ +V V +ALI++++K G  +DA 
Sbjct: 159 RPNVYTYSSVLRSCN---GMSDVRMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDAL 214

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD +   D +VWNS+I G+A +     AL+LF  M R        T   +L AC    
Sbjct: 215 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274

Query: 224 LVNEGRRFFNTMKDEYAI---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           L+  G      M+    I   +  +     +V++  + G +E+A ++   MK E D + W
Sbjct: 275 LLELG------MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITW 327

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGT---YVLLSNIYAAIGNW----DGVARV 333
            T++     +G      K+ E      + +SGT   Y+ +  +  A  +     DG    
Sbjct: 328 STMISGLAQNGYSQEALKLFE-----RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382

Query: 334 RTLMKEKG---VQKEPGC 348
           R++ K  G   V++  GC
Sbjct: 383 RSMKKLYGIDPVREHYGC 400



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 1/144 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           + L+    ++  Y K G +  A  +F+ M+E+DV+ W+ MI G AQ+G + EAL LF RM
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            +   +PN +T V VL AC   G LE G +    ++    I    +    +I++  K G 
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410

Query: 159 LKDA-RLVFDRVNDKDVVVWNSMI 181
           L DA +L+ +   + D V W +++
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLL 434


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/480 (42%), Positives = 303/480 (63%), Gaps = 4/480 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           KFS    +   ++L DL  +G ++    +       + +V  T +L  Y+K G++  AR 
Sbjct: 134 KFSFSIAIEACSNLEDL-EQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARK 192

Query: 63  LFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQI 120
           +FD +  + D VCWN MI  YAQHG   +AL L+R M     + P + T V V+  C ++
Sbjct: 193 VFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAEL 252

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            AL+ GR IH+ +  + N   N+ V  AL++MY KCG L +A  VF  +  KD + WN++
Sbjct: 253 SALKQGRAIHARVRAT-NFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTI 311

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I  YA HG    AL L+ EM    +KP+++TF+GLLSAC+H GLV +G  +F  M+D++ 
Sbjct: 312 ISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHR 371

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P V H+GC+++LL R G++ EA  ++  M I+ ++V W +LLGAC+ HG++  G + A
Sbjct: 372 IKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAA 431

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + ++ +    SG YVLLSNIYAA G W  V ++R +M  +GV+K PG S IE+ + VHEF
Sbjct: 432 DQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEF 491

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           ++GD  HP+ +EIY+ L ++   +K  GYVP T  V HD+ E++K++ L  HSEKLA+ +
Sbjct: 492 VSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVY 551

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G +     + ++IVKNLRVC DCH   K +S+ TGRKI++RD  RFH F NG+CSC DYW
Sbjct: 552 GNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 146/276 (52%), Gaps = 9/276 (3%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           +G ++    ++   +P  ++V  T +++ Y K G +  AR  F++++ K+ V WN M+  
Sbjct: 49  QGREIHRYARISGLLP--NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 82  YAQHGLANEALVLFRRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RN 138
           Y   G   EAL LFR M   +    P++ +    + AC  +  LE GR IH  +    + 
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKE 166

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           +  +V VGTAL+NMYSKCG L++AR VFD + +D D V WN+MI  YA HG GK AL L+
Sbjct: 167 LHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 198 NEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
             M     L P   TF+ ++  CA    + +GR     ++     +  +     +V++  
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVR-ATNFDANLLVSNALVHMYG 285

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + G ++EA  +   MK++ D + W T++ +   HG+
Sbjct: 286 KCGCLDEALDVFHSMKLK-DEISWNTIISSYAYHGH 320



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 121/216 (56%), Gaps = 6/216 (2%)

Query: 81  GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA--LESGRWIHSYIENSRN 138
            ++ +G  +EALV FRRM      P+ VT   +L+A  Q+GA  ++ GR IH Y   S  
Sbjct: 3   AFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS-G 61

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
           +  NV VGTA+I+MY KCG L DAR  F+ +  K+ V WN+M+  Y + G  ++AL+LF 
Sbjct: 62  LLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFR 121

Query: 199 EMC-RIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE-YAIEPKVEHYGCMVNLL 255
           EMC R R  +P   +F   + AC++   + +GR     ++ E   +   V     ++N+ 
Sbjct: 122 EMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMY 181

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           S+ G +EEA K+   ++ + DSV W  ++ A   HG
Sbjct: 182 SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHG 217


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/434 (43%), Positives = 274/434 (63%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   ++ A  +F++    D++    MI   +Q      A+ LF  ML + +EP+
Sbjct: 445 LIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 504

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                ++L+AC  + A E G+ +H+++   R    +   G AL+  Y+KCGS++DA L F
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIK-RQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + ++ VV W++MI G A HG GK AL+LF  M    + P+ IT   +L AC HAGLV+
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E +R+FN+MK+ + I+   EHY CM++LL RAG++++A +LV  M  + ++ +WG LLGA
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            R+H +  LG+  AE L       SGT+VLL+N YA+ G W+ VA+VR LMK+  ++KEP
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEP 743

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
             S IE+ +KVH F+ GD  HP +KEIY  L E+   +   G+VP   + LHD+   +K+
Sbjct: 744 AMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKE 803

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LAVAF L+ST PG  I++ KNLR+C DCH  FK ISK   R+I++RD NRF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 863

Query: 467 HHFVNGTCSCGDYW 480
           HHF +GTCSCGDYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 66/375 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   DKD++ + +LVD+Y                                K G V  A 
Sbjct: 229 VRMGYDKDVFTANALVDMYM-------------------------------KMGRVDIAS 257

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           V+F+ M + DVV WN +I G   +G  + A+ L  +M    + PN  T  ++L AC   G
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A + GR IH ++  + N   +  +G  L++MY+K   L DAR VFD +  +D+++ N++I
Sbjct: 318 AFDLGRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALI 376

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF------FNTM 235
            G +  G   +AL LF E+ +  L  +  T   +L + A     +  R+          +
Sbjct: 377 SGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFI 436

Query: 236 KDEYAIEPKVEHY----------------------GC--MVNLLSRAGQVEEAYKLVMDM 271
            D + +   ++ Y                       C  M+  LS+    E A KL M+M
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM 496

Query: 272 ---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNW 327
               +EPD  +  +LL AC        G+++  +LI  Q ++++     L   YA  G+ 
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 328 DGVARVRTLMKEKGV 342
           +      + + E+GV
Sbjct: 557 EDAELAFSSLPERGV 571



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
             ++  Y   G +  AR +F++ + E++ V WN ++  Y ++    +A+ +F  M+   +
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P E     V++AC     +E+GR +H+ +      K +V    AL++MY K G +  A 
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK-DVFTANALVDMYMKMGRVDIAS 257

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++F+++ D DVV WN++I G  ++G    A++L  +M    L P+  T   +L AC+ AG
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             + GR+    M    A        G +V++ ++   +++A K V D     D +L   L
Sbjct: 318 AFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDARK-VFDWMFHRDLILCNAL 375

Query: 284 LGACRLHG 291
           +  C  HG
Sbjct: 376 ISGCS-HG 382



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK   +  AR +FD M  +D++  N +I G +  G  +EAL LF  +  E +  N  T 
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTL 407

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            AVL +   + A  + R +H+       I  +  V   LI+ Y KC  L DA  VF+  +
Sbjct: 408 AAVLKSTASLEAASTTRQVHALAVKIGFI-FDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             D++   SMI   +    G+ A++LF EM R  L+P       LL+ACA      +G++
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 231 FF------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                     M D +A    V  Y       ++ G +E+A +L      E   V W  ++
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTY-------AKCGSIEDA-ELAFSSLPERGVVSWSAMI 578

Query: 285 GACRLHGN 292
           G    HG+
Sbjct: 579 GGLAQHGH 586



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 136/276 (49%), Gaps = 9/276 (3%)

Query: 20  YARGGDVLSAEKLFATMPQR-SLVSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
           YA    +L    L A++ +  SL S    +++ Y+K      AR +FD++ +   V W+ 
Sbjct: 14  YAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           ++  Y+ +GL   A+  F  M AE V  NE  A+ V+  C     L  G  +H+ +  + 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEF-ALPVVLKCVPDARL--GAQVHA-MAMAT 129

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQL 196
               +V V  AL+ MY   G + DAR VF+  + +++ V WN ++  Y  +    DA+Q+
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F EM    ++P++  F  +++AC  +  +  GR+  + M      +  V     +V++  
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYM 248

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + G+V+ A  ++ +   + D V W  L+  C L+G+
Sbjct: 249 KMGRVDIA-SVIFEKMPDSDVVSWNALISGCVLNGH 283



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 37/239 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D +   +LV  YA+ G +  AE  F+++P+R +VS                  
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS------------------ 573

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ MI G AQHG    AL LF RM+ E + PN +T  +VL AC   G
Sbjct: 574 -------------WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 620

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++  +   + ++    I    +  + +I++  + G L DA  LV       +  +W ++
Sbjct: 621 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGAL 680

Query: 181 IVGYAMHGFGKDAL--QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           +    +H   KD    +L  E   I       T + L +  A AG+ NE  +    MKD
Sbjct: 681 LGASRVH---KDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKD 736


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/435 (42%), Positives = 277/435 (63%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +++ YA+ G +  A + F+ ++ KD + WN +I G+AQ G   +AL +F +M   K+E 
Sbjct: 556 ALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEA 615

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T  + +SA   I  ++ G+ IH+ I   R    +++V  ALI  Y+KCGS++DAR  
Sbjct: 616 SFFTFGSAVSAAANIANIKQGKQIHAMIIK-RGFDSDIEVSNALITFYAKCGSIEDARRE 674

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  + +K+ V WN+MI GY+ HG+G +A+ LF +M ++   P+ +TF+G+LSAC+H GLV
Sbjct: 675 FCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLV 734

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +G  +F +M  E+ + PK  HY C+V+L+SRAG +  A K + +M IEPD+ +W TLL 
Sbjct: 735 TKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLS 794

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC +H N+ +GE  A++L+     +S TYVLLSN+YA  G WD   + R +M+ +GV+KE
Sbjct: 795 ACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKE 854

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IE+ N VH F  GD  HP + +IY  L E+N      GY      +L+D+ ++QK
Sbjct: 855 PGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQK 914

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             ++ +HSEKLA+ FGL+S      I ++KNLRVC DCH+  K +SK + R I++RD  R
Sbjct: 915 DPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYR 974

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF  G CSC DYW
Sbjct: 975 FHHFEGGICSCKDYW 989



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 172/324 (53%), Gaps = 15/324 (4%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++  T  Q ++   + ++  YAK G++  A V+   + E DVV W  +I GYAQH L  E
Sbjct: 440 QVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAE 499

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTA 148
           AL  F+ ML   ++ + +   + +SAC  I AL  GR IH  SY+        ++ +G A
Sbjct: 500 ALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSE---DLSIGNA 556

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+++Y++CG +K+A L F++++ KD + WN +I G+A  G+ +DAL++F +M R +L+ S
Sbjct: 557 LVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEAS 616

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             TF   +SA A+   + +G++  + M  +   +  +E    ++   ++ G +E+A +  
Sbjct: 617 FFTFGSAVSAAANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREF 675

Query: 269 MDMKIEPDSVLWGTLLGACRLHG----NIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
            +M  E + V W  ++     HG     + L EK+ +      + N  T+V + +  + +
Sbjct: 676 CEMP-EKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQV---GEMPNHVTFVGVLSACSHV 731

Query: 325 G-NWDGVARVRTLMKEKGVQKEPG 347
           G    G+    ++ KE G+  +P 
Sbjct: 732 GLVTKGLGYFESMSKEHGLVPKPA 755



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 151/299 (50%), Gaps = 6/299 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G + +AR +FD++  KD V W  MI G++Q+G   EA+ LF  M    + P 
Sbjct: 153 LIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPT 212

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                +VLS C +I   + G  +H+ +    +  +   V  AL+ +YS+  +   A  VF
Sbjct: 213 PYVFSSVLSGCTKIKLFDVGEQLHALVFKYGS-SLETYVCNALVTLYSRMPNFVSAEKVF 271

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            ++  KD V +NS+I G A  GF   AL+LF +M R  LKP  +T   LLSACA  G + 
Sbjct: 272 SKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALC 331

Query: 227 EGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           +G +  +  +K   + +  VE  G +++L      ++ A+++ +  + E + VLW  +L 
Sbjct: 332 KGEQLHSYVIKAGISSDMIVE--GALLDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLV 388

Query: 286 ACRLHGNIALGEKIAEYL-ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           A     N++   +I   + I   + N  TY  +     ++G  D   ++ T + + G Q
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQ 447



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 174/364 (47%), Gaps = 17/364 (4%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAAR 61
           L  D     SL+   A  G +   E+L + + +  + S       +L  Y    ++  A 
Sbjct: 310 LKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAH 369

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F   + ++VV WNVM+  + +    +E+  +FR+M  + + PN+ T  ++L  C  +G
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G  IH+ +  +   + NV V + LI+MY+K G L  A ++   + + DVV W ++I
Sbjct: 430 ALDLGEQIHTQVIKT-GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALI 488

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYA 240
            GYA H    +AL+ F EM    ++  +I F   +SACA    +N+GR+    +    Y+
Sbjct: 489 SGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYS 548

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
            +  + +   +V+L +R G+++EAY L  +     DS+ W  L+      G      K+ 
Sbjct: 549 EDLSIGN--ALVSLYARCGRIKEAY-LEFEKIDAKDSISWNGLISGFAQSGYCEDALKVF 605

Query: 301 EYLISQNLANSGTYVLLSNIYAA--IGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
             +    L  S  +   S + AA  I N     ++  ++ ++G       S IE+SN + 
Sbjct: 606 AQMNRAKLEAS-FFTFGSAVSAAANIANIKQGKQIHAMIIKRGFD-----SDIEVSNALI 659

Query: 359 EFLA 362
            F A
Sbjct: 660 TFYA 663



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 39/333 (11%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           L+DL    G ++  +KL   + +       V    ++  Y   G++     +F+DM  + 
Sbjct: 16  LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-GQIGALESGRWIH 130
           V  W+ +I G+ +  ++N  L LF  M+ E V P E++  +VL AC G    +     IH
Sbjct: 76  VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIH 135

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
           + I     +  +  +   LI +Y+K G +  AR VFD +  KD V W +MI G++ +G+ 
Sbjct: 136 ARI-ICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYE 194

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF------FNTMKDEYAIEPK 244
           ++A+ LF EM    + P+   F  +LS C    L + G +       + +  + Y     
Sbjct: 195 EEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNAL 254

Query: 245 VEHYGCMVNL------------------------LSRAGQVEEAYKLVMDMK---IEPDS 277
           V  Y  M N                         L++ G  + A +L   MK   ++PD 
Sbjct: 255 VTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDC 314

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           V   +LL AC  +G +  GE++  Y+I   +++
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKAGISS 347



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++T Y++     +A  +F  M+ KD V +N +I G AQ G ++ AL LF +M  + ++P
Sbjct: 253 ALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKP 312

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT  ++LSAC   GAL  G  +HSY+  +  I  ++ V  AL+++Y  C  +K A  +
Sbjct: 313 DCVTVASLLSACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIKTAHEM 371

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F     ++VV+WN M+V +       ++ ++F +M    L P+  T+  +L  C   G +
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGAL 431

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + G +  +T   +   +  V     ++++ ++ G+++ A+ +++    E D V W  L+ 
Sbjct: 432 DLGEQ-IHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAH-VILRTLTEDDVVSWTALIS 489

Query: 286 ACRLHGNIA 294
               H   A
Sbjct: 490 GYAQHNLFA 498



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 40/220 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D+ VS +L+  YA+ G +  A + F  MP+++ VS   M+T Y          
Sbjct: 644 IKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGY---------- 693

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                +QHG  NEA+ LF +M      PN VT V VLSAC  +G
Sbjct: 694 ---------------------SQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVG 732

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSM 180
            +  G      +     +         ++++ S+ G L  AR   + +  + D  +W ++
Sbjct: 733 LVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTL 792

Query: 181 IVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +    +H     G+ A Q       + L+P D     LLS
Sbjct: 793 LSACTVHKNVEVGEFAAQHL-----LELEPEDSATYVLLS 827


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/434 (43%), Positives = 274/434 (63%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   ++ A  +F++    D++    MI   +Q      A+ LF  ML + +EP+
Sbjct: 445 LIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 504

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                ++L+AC  + A E G+ +H+++   R    +   G AL+  Y+KCGS++DA L F
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIK-RQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + ++ VV W++MI G A HG GK AL+LF  M    + P+ IT   +L AC HAGLV+
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E +R+FN+MK+ + I+   EHY CM++LL RAG++++A +LV  M  + ++ +WG LLGA
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            R+H +  LG+  AE L       SGT+VLL+N YA+ G W+ VA+VR LMK+  ++KEP
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEP 743

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
             S IE+ +KVH F+ GD  HP +KEIY  L E+   +   G+VP   + LHD+   +K+
Sbjct: 744 AMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKE 803

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LAVAF L+ST PG  I++ KNLR+C DCH  FK ISK   R+I++RD NRF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 863

Query: 467 HHFVNGTCSCGDYW 480
           HHF +GTCSCGDYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 66/375 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V+   DKD++ + +LVD+Y                                K G V  A 
Sbjct: 229 VRMGYDKDVFTANALVDMYM-------------------------------KMGRVDIAS 257

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           V+F+ M + DVV WN +I G   +G  + A+ L  +M    + PN  T  ++L AC   G
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A + GR IH ++  + N   +  +G  L++MY+K   L DAR VFD +  +D+++ N++I
Sbjct: 318 AFDLGRQIHGFMIKA-NADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALI 376

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF------FNTM 235
            G +  G   +AL LF E+ +  L  +  T   +L + A     +  R+          +
Sbjct: 377 SGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFI 436

Query: 236 KDEYAIEPKVEHY----------------------GC--MVNLLSRAGQVEEAYKLVMDM 271
            D + +   ++ Y                       C  M+  LS+    E A KL M+M
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM 496

Query: 272 ---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNW 327
               +EPD  +  +LL AC        G+++  +LI  Q ++++     L   YA  G+ 
Sbjct: 497 LRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSI 556

Query: 328 DGVARVRTLMKEKGV 342
           +      + + E+GV
Sbjct: 557 EDAELAFSSLPERGV 571



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 125/248 (50%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
             ++  Y   G +  AR +F++ + E++ V WN ++  Y ++    +A+ +F  M+   +
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P E     V++AC     +E+GR +H+ +      K +V    AL++MY K G +  A 
Sbjct: 199 QPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK-DVFTANALVDMYMKMGRVDIAS 257

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++F+++ D DVV WN++I G  ++G    A++L  +M    L P+  T   +L AC+ AG
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             + GR+    M    A        G +V++ ++   +++A K V D     D +L   L
Sbjct: 318 AFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDARK-VFDWMFHRDLILCNAL 375

Query: 284 LGACRLHG 291
           +  C  HG
Sbjct: 376 ISGCS-HG 382



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK   +  AR +FD M  +D++  N +I G +  G  +EAL LF  +  E +  N  T 
Sbjct: 348 YAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTL 407

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            AVL +   + A  + R +H+       I  +  V   LI+ Y KC  L DA  VF+  +
Sbjct: 408 AAVLKSTASLEAASTTRQVHALAVKIGFI-FDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             D++   SMI   +    G+ A++LF EM R  L+P       LL+ACA      +G++
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 231 FF------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                     M D +A    V  Y       ++ G +E+A +L      E   V W  ++
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTY-------AKCGSIEDA-ELAFSSLPERGVVSWSAMI 578

Query: 285 GACRLHGN 292
           G    HG+
Sbjct: 579 GGLAQHGH 586



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 135/276 (48%), Gaps = 9/276 (3%)

Query: 20  YARGGDVLSAEKLFATMPQR-SLVSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
           YA    +L    L A++ +  SL S    +++ Y+K      AR  FD++ +   V W+ 
Sbjct: 14  YAAAQALLPGAHLHASLLKSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSS 73

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           ++  Y+ +GL   A+  F  M AE V  NE  A+ V+  C     L  G  +H+ +  + 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEF-ALPVVLKCVPDARL--GAQVHA-MAMAT 129

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQL 196
               +V V  AL+ MY   G + DAR VF+  + +++ V WN ++  Y  +    DA+Q+
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F EM    ++P++  F  +++AC  +  +  GR+  + M      +  V     +V++  
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ-VHAMVVRMGYDKDVFTANALVDMYM 248

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + G+V+ A  ++ +   + D V W  L+  C L+G+
Sbjct: 249 KMGRVDIA-SVIFEKMPDSDVVSWNALISGCVLNGH 283



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 37/239 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D +   +LV  YA+ G +  AE  F+++P+R +VS                  
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS------------------ 573

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ MI G AQHG    AL LF RM+ E + PN +T  +VL AC   G
Sbjct: 574 -------------WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 620

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++  +   + ++    I    +  + +I++  + G L DA  LV       +  +W ++
Sbjct: 621 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGAL 680

Query: 181 IVGYAMHGFGKDAL--QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           +    +H   KD    +L  E   I       T + L +  A AG+ NE  +    MKD
Sbjct: 681 LGASRVH---KDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKD 736


>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
 gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
          Length = 555

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 270/437 (61%), Gaps = 22/437 (5%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           ++L+ YA  G++ AAR +FD       V                + L LFR M       
Sbjct: 139 SLLSLYAAAGDLPAARQVFDLSPPNHYV----------------QVLRLFRTMRTA---- 178

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           + VT +A+LSAC  +GAL + RW H+Y+  + +  +   + TAL+NMY +CG ++ A  +
Sbjct: 179 DHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSL 238

Query: 166 FDRV--NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           F       KDV  W  MI G A++GF  DAL LF  M    ++P  +T   +LSAC HAG
Sbjct: 239 FHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAG 298

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +V+EG+R    M  +Y ++P +EHYGC V+LL RAG +EEA  L+  +  + D  LWG L
Sbjct: 299 MVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGAL 358

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACR H N  +G+ +A  ++  +  ++G +V LSN+YAA G WD V  VR+ MK+  + 
Sbjct: 359 LVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIH 418

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K PG S +EL   V+EFL+GD  HP+S +IY ML+EI   L  +G+ P T++V  DI E+
Sbjct: 419 KPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEE 478

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K+  +  HSEKLAVAFGLI+T+ G  I+IVKNLR+C DCH+V K++S+   R I++RDR
Sbjct: 479 DKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDR 538

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF +G+CSC DYW
Sbjct: 539 NRFHHFKSGSCSCLDYW 555



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 68/272 (25%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALES-------- 125
           +N  I   A+    + A+ L+R ML+  +  PN  T   +L+AC ++   +S        
Sbjct: 56  YNSAIRALARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDSSSAAAAAA 115

Query: 126 -GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G  +H+ +        +  +  +L+++Y+  G L  AR VFD       V         
Sbjct: 116 AGVALHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYV--------- 166

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
                    L+LF  M     + +D +T + LLSACAH G ++  R     +    +   
Sbjct: 167 -------QVLRLFRTM-----RTADHVTLLALLSACAHLGALHTARWAHAYLATTCSFPI 214

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKL------------------------------------ 267
                  ++N+  R G V+ A  L                                    
Sbjct: 215 TTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTH 274

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           + D  I+PDSV    +L AC   G +  G++I
Sbjct: 275 MKDHNIQPDSVTLTAVLSACTHAGMVDEGKRI 306


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/455 (42%), Positives = 294/455 (64%), Gaps = 10/455 (2%)

Query: 15  SLVDLYARGGDVLSAEKLFATM-----PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           +L+D+YA+ GD   A+++F  +     PQ    S   ++  Y K G V  AR LFD+ME 
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQ----SWNAIIDGYCKHGHVDVARSLFDEMEV 334

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           +D++ +N M+ GY   G   EAL+LF  M    +  +  T V +L+AC  +GAL+ GR +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
           H+ IE  R ++ ++ +GTAL++MY KCG + +A +VF R+  +DV  W +MI G A +G 
Sbjct: 395 HACIEQ-RLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGM 453

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
           GK AL+ F +M     +P+ +++I +L+AC+H+ L+NEGR +F+ M+  Y I P++EHYG
Sbjct: 454 GKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYG 513

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           CM++LL R+G ++EA  LV  M I+P++V+W ++L ACR+H +I L +  AE+L+     
Sbjct: 514 CMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPD 573

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
             G YV L NIY     W+  +++R LM+E+ V+K  G SSI ++ +VH+F+  D  HP+
Sbjct: 574 EDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPR 633

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
             EI  MLEEI+  LK+ GY P T  +  D+ E++K+ +L  HSEKLA+AFGLI+  P  
Sbjct: 634 ILEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNL 693

Query: 430 SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
            + I KNLRVC DCH+  KLIS+   R+I++RDR+
Sbjct: 694 PVHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRS 728



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 152/313 (48%), Gaps = 35/313 (11%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +VS SL+ +Y R G    A + F  +  +  V+ T +++  AK G +   ++L      +
Sbjct: 143 FVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVR 202

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           DV+ W  +I  Y++   A EA+  F+ ML+  + P+EVT +AVLSAC ++  LE GR +H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKD----------------------------- 161
             +E  + +  +  +  ALI+MY+KCG                                 
Sbjct: 263 LLVEE-KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH 321

Query: 162 ---ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
              AR +FD +  +D++ +NSM+ GY   G  ++AL LF  M R  L+  + T + LL+A
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTA 381

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           CA  G + +GR     + ++  +E  +     ++++  + G+V+EA  +V     + D  
Sbjct: 382 CASLGALQQGRALHACI-EQRLVEADIYLGTALLDMYMKCGRVDEA-TIVFQRMGKRDVH 439

Query: 279 LWGTLLGACRLHG 291
            W  ++     +G
Sbjct: 440 TWTAMIAGLAFNG 452


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/438 (44%), Positives = 289/438 (65%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K G++  AR LFD + ++ VV WN MI GY Q+GLA  A+ ++R M   +V 
Sbjct: 148 TALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVV 207

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+  T V  LSAC Q GAL+ GR +   I  S  + V+V +G+AL+NMY++CG +  AR 
Sbjct: 208 PDSATFVTTLSACAQAGALDLGREVERRIV-SDQMDVSVFLGSALVNMYARCGLVSKARD 266

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            FDR+ +++VV W SMI GY MHG G +A++LF+ M      P+D+TF+ +L+ACAHAGL
Sbjct: 267 WFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGL 326

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTL 283
           VNEGR  F++MK  Y + P+ EHY  MV++  RAG +++A + + D +  EP   +W  +
Sbjct: 327 VNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAM 386

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N  LG ++AE LI+    N    VLLSNIYA  G  + V +VR +M ++ ++
Sbjct: 387 LGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLK 446

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K+ G S IEL    H F  G+  H +++EIY  LEE+   +   GYVP+T  VLH++ E+
Sbjct: 447 KQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRISDAGYVPETDSVLHELEEE 506

Query: 404 QKQNSLEVHSEKLAVAFGL-ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +++ +L  HSEKLAVA+GL +S+   T I+++KNLR+C DCH   K +S    R+I++RD
Sbjct: 507 EREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDCHLAIKFMSSVESREIIVRD 566

Query: 463 RNRFHHFVNGTCSCGDYW 480
           ++RFHHF +G CSC +YW
Sbjct: 567 KHRFHHFKDGKCSCLEYW 584



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 3/210 (1%)

Query: 83  AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
           A  GL  EA+  + R+LA  +  +     A   AC  + AL +G  +H++         +
Sbjct: 85  AHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAH-SVLLGFGSD 143

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
             V TAL+ +YSKCG L  AR +FD + D+ VV WN+MI GY  +G  + A++++ EM  
Sbjct: 144 RFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQV 203

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
            ++ P   TF+  LSACA AG ++ GR     +  +  ++  V     +VN+ +R G V 
Sbjct: 204 AQVVPDSATFVTTLSACAQAGALDLGREVERRIVSD-QMDVSVFLGSALVNMYARCGLVS 262

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +A     D   E + V W +++    +HG+
Sbjct: 263 KARDW-FDRLQERNVVTWTSMIAGYGMHGH 291


>gi|449449673|ref|XP_004142589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Cucumis sativus]
          Length = 628

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/481 (41%), Positives = 289/481 (60%), Gaps = 6/481 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM--PQRSLVSLTTMLTCYAKQGEVAA 59
           +KF       +  SLV  Y R G +    +L   +   Q  LV++  ++  + K GE   
Sbjct: 152 IKFGYGNYPTLIASLVSTYQRVGCLNRVHQLLDILCSKQLDLVAMNLLIGNFMKIGECKF 211

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           A+ +F  M  +DVV WN +I G  ++   +EA   FR+ML   ++P+  T  ++L+AC Q
Sbjct: 212 AKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACAQ 271

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
           +GA  +  W+H+ +   + I++N  +  ALI+ YSKCGS++ A+ +F  +   D  VWN 
Sbjct: 272 LGAPSNTHWVHAQM-TQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIPHSDTSVWNV 330

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
           MI G A+HG   DAL LF  M    + P  ITF+G+L+AC H  L++ GRR+F  MK  Y
Sbjct: 331 MIKGLAIHGLAMDALSLFLRMEHESVLPDAITFLGVLTACNHGCLIDHGRRYFELMKSHY 390

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
           +I+P++EHYG MV+L SRAG +EEAY L++ M IEPD V W TLL  CR++ N  L E +
Sbjct: 391 SIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCRIYKNHKLAE-V 449

Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
           A   +SQ    SG YVLLSNIY ++  W     VR +MK   V+K+ G S IEL   +  
Sbjct: 450 AIANMSQR--KSGDYVLLSNIYCSLNRWKEAETVRKMMKINRVRKKRGKSWIELGGTIQH 507

Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
           F +GD  HP+S  I  +L  +    + EGY+P T++V  DI E++K+ +L  HSEK+A+A
Sbjct: 508 FKSGDRLHPESDAIEKVLCSLMKRTRTEGYMPVTELVFMDISEEEKEENLSFHSEKMALA 567

Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           + ++ T PG  I I KNLR+C DCH   KL+S+   R I++RDR RFH F  G CSCGD 
Sbjct: 568 YAILKTSPGAKISISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDR 627

Query: 480 W 480
           W
Sbjct: 628 W 628


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 277/436 (63%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  A  +F+ M ++ VV W+ M  GY Q+ +  +AL LFR+     ++
Sbjct: 204 TALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLK 263

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            ++    +V+ AC  + A+  G+ +++ +  S     N+ V ++LI+MY+KCG ++++  
Sbjct: 264 HDQFLMSSVICACAGLAAMIEGKQMNALLSKS-GFCSNIFVASSLIDMYAKCGGIEESYK 322

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  V  ++VV+WN+MI G + H    + + LF +M ++ L P+D+TF+ +LSAC H GL
Sbjct: 323 VFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGL 382

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +G+++F+ M  E+ + P V HY CMV+ LSRAGQ+ EAY L+  +     + +WG+LL
Sbjct: 383 VRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLL 442

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +CR HGN+ L E  A+ L      NSG Y+LLSN+YAA G WD VA++R L+KE  V+K
Sbjct: 443 ASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKK 502

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E G S IE+ +KVH F+ G+  HPK  EIY  L E+   L+  GY  +TQ  LH +GE  
Sbjct: 503 ERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESI 562

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           KQ  L  HSEKLA   GL+   P   I+I+KNLR+C DCH+  KL SKF  R +++RD N
Sbjct: 563 KQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTN 622

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF NG CSCGD+W
Sbjct: 623 RFHHFKNGCCSCGDFW 638



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 142/271 (52%), Gaps = 7/271 (2%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L++   ++  Y+K G V  AR +FD+M  + +V WN MI    Q+G  NEAL L  +M  
Sbjct: 99  LLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQR 158

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E    +E T  +VL AC    AL   + +H++   +  + +NV V TAL+++Y+KCG +K
Sbjct: 159 EGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAA-MDLNVFVATALLDVYAKCGLMK 217

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DA  VF+ + D+ VV W+SM  GY  +   + AL LF +     LK        ++ ACA
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
               + EG++  N +  +      +     ++++ ++ G +EE+YK+  D++ + + VLW
Sbjct: 278 GLAAMIEGKQ-MNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLW 335

Query: 281 GTLLGACRLHGN----IALGEKIAEYLISQN 307
             ++     H      + L EK+ +  +S N
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPN 366



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 7/173 (4%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C +   L  G+  H+ I     +K ++     LINMYSKCGS+  AR VFD +  +
Sbjct: 70  ILKLCAKRKLLLQGKACHAQIL-LMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSR 128

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
            +V WN+MI     +G   +AL L  +M R     S+ T   +L ACA    ++E  +  
Sbjct: 129 SLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC-QLL 187

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS--VLWGTL 283
           +    + A++  V     ++++ ++ G +++A  +   M   PD   V W ++
Sbjct: 188 HAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESM---PDRSVVTWSSM 237


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/445 (44%), Positives = 282/445 (63%), Gaps = 4/445 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R +V  T ++ CY + G V  AR++FD+M E+D+V WN MI  Y+Q G   EAL ++  
Sbjct: 142 ERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDY 201

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E V  +  T V +LS+C  +GAL  G  +H  I + + +  NV VG ALI+MY+KCG
Sbjct: 202 MRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHR-IASEKGLLRNVFVGNALIDMYAKCG 260

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           SL  A  VF+ +  +D   WNSMIVG+ +HGFG +A+  FN+M    ++P+ I F+GLL 
Sbjct: 261 SLDGALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLC 319

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
            C+H GLV EG  FF+ M  ++ ++P ++HYGC+V++  RAG++E+A +++ D   + D 
Sbjct: 320 GCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDP 379

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
           VLW  LL + ++H N+ +GE     L      N+G  VLL+ IYA   +  GVAR+R L+
Sbjct: 380 VLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQGVARMRKLI 439

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QTQIV 396
           K++G++  PG S IE+S++VH F+  D  HP S+ IY  LEE+       GYV  ++Q +
Sbjct: 440 KKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGYVEDKSQFI 499

Query: 397 LH-DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            H    E+  ++S   HSEKLA+AFGL  T  GTS++IVKNLRVC DCH   K +S+   
Sbjct: 500 FHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFTKFVSRAFN 559

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R I++RDR RFHHF  G CSC DYW
Sbjct: 560 RDIIVRDRLRFHHFKGGLCSCRDYW 584



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 132/255 (51%), Gaps = 9/255 (3%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAV 113
           G +  A+ LF  +       WN +I G+AQ     +A+  + RML + V  P+  T    
Sbjct: 57  GSLPYAQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFT 116

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC +I AL+    +H  I  +   + +V V T L+  Y + G ++ AR+VFD + ++D
Sbjct: 117 LKACERIKALKKCEEVHGSIIRT-GYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERD 175

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           +V WN+MI  Y+  G+ ++AL++++ M    +     T +GLLS+C+H G +N G +  +
Sbjct: 176 LVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVK-LH 234

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
            +  E  +   V     ++++ ++ G ++ A ++   M    D+  W +++    +HG  
Sbjct: 235 RIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNGMP--RDAFTWNSMIVGFGVHG-- 290

Query: 294 ALGEKIAEYLISQNL 308
             G++ A Y  +Q L
Sbjct: 291 -FGDE-AIYFFNQML 303


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/438 (43%), Positives = 280/438 (63%), Gaps = 9/438 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y K G+++AA+  FD +   D V W  MI G  ++G    A  +F +M    V P+
Sbjct: 558 ILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPD 617

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDA 162
           E T   +  A   + ALE GR IH+       +K+N      VGT+L++MY+KCGS+ DA
Sbjct: 618 EFTIATLAKASSCLTALEQGRQIHA-----NALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +F R+   ++  WN+M+VG A HG GK+ LQLF +M  + +KP  +TFIG+LSAC+H+
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV+E  +   +M  +Y I+P++EHY C+ + L RAG V++A  L+  M +E  + ++ T
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL ACR+ G+   G+++A  L+     +S  YVLLSN+YAA   WD +   RT+MK   V
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +K+PG S IE+ NK+H F+  D  + +++ IY  ++++   +K EGYVP+T   L D+ E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+ +L  HSEKLAVAFGL+ST P T I+++KNLRVC DCH   K I+K   R+I++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972

Query: 463 RNRFHHFVNGTCSCGDYW 480
            NRFH F +G CSCGDYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 11/263 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y K  +   AR +FD+M E+D++ WN +I G AQ+GL  EA+ LF ++L   ++P
Sbjct: 355 SLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKP 414

Query: 106 NEVTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           ++ T  +VL A   +   L   + +H +     N+  +  V TALI+ YS+   +K+A +
Sbjct: 415 DQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF-VSTALIDAYSRNRCMKEAEI 473

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+R N  D+V WN+M+ GY     G   L+LF  M +   +  D T   +   C     
Sbjct: 474 LFERHN-FDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFA 532

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           +N+G++     +K  Y ++  V     ++++  + G +  A +   D    PD V W T+
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAA-QFAFDSIPVPDDVAWTTM 589

Query: 284 LGACRLHGNIALGEKIAEYLISQ 306
           +  C  +G     E+ A ++ SQ
Sbjct: 590 ISGCIENGE----EERAFHVFSQ 608



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 21/279 (7%)

Query: 33  FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA---- 88
           F   P+R L++   +++ Y+K G +  AR +FD M ++D+V WN ++  YAQ        
Sbjct: 68  FEENPERFLIN--NLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVEN 125

Query: 89  -NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ--- 144
             +A +LFR +  + V  + +T   +L  C   G + +    H Y       K+ +    
Sbjct: 126 IQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA-----CKIGLDGDE 180

Query: 145 -VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
            V  AL+N+Y K G +K+ +++F+ +  +DVV+WN M+  Y   GF ++A+ L +     
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            L P++IT   L           + + F N        E    + G    L   +GQ   
Sbjct: 241 GLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYL--HSGQYSA 298

Query: 264 AYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKI 299
             K   DM    +E D V +  +L       ++ALG+++
Sbjct: 299 LLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQV 337



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 39/256 (15%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------- 55
           K  LD D +V+ +LV++Y + G V   + LF  MP R +V    ML  Y + G       
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232

Query: 56  -------------EVAA---ARVLFDDMEE---------------KDVVCWNVMIDGYAQ 84
                        E+     AR+  DD +                 +++  N  +  Y  
Sbjct: 233 LSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLH 292

Query: 85  HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
            G  +  L  F  M+   VE ++VT + +L+   ++ +L  G+ +H  +     + + + 
Sbjct: 293 SGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC-MALKLGLDLMLT 351

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V  +LINMY K      AR VFD ++++D++ WNS+I G A +G   +A+ LF ++ R  
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411

Query: 205 LKPSDITFIGLLSACA 220
           LKP   T   +L A +
Sbjct: 412 LKPDQYTMTSVLKAAS 427



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 21/184 (11%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A+ S+   +G     R I ++ EN     +N      LI+MYSKCGSL  AR VFD++ D
Sbjct: 49  AITSSDLMLGKCTHAR-ILTFEENPERFLIN-----NLISMYSKCGSLTYARRVFDKMPD 102

Query: 172 KDVVVWNSMIVGYAMHGFG-----KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +D+V WNS++  YA          + A  LF  + +  +  S +T   +L  C H+G V 
Sbjct: 103 RDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVW 162

Query: 227 EGRRFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
               F       YA +  ++      G +VN+  + G+V+E   L  +M    D VLW  
Sbjct: 163 ASESFHG-----YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNL 216

Query: 283 LLGA 286
           +L A
Sbjct: 217 MLKA 220



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 3/174 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  YAK G +  A  LF  +E  ++  WN M+ G AQHG   E L LF++M +  ++
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIK 716

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++VT + VLSAC   G +         +     IK  ++  + L +   + G +K A  
Sbjct: 717 PDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAEN 776

Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           + + ++ +    ++ +++    + G  +   ++  ++  + L+P D +   LLS
Sbjct: 777 LIESMSMEASASMYRTLLAACRVQGDTETGKRVATKL--LELEPLDSSAYVLLS 828


>gi|296085509|emb|CBI29241.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/452 (45%), Positives = 287/452 (63%), Gaps = 32/452 (7%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACG 118
           AR +F  M   +   +N +I   ++     +AL++F  M+ +  VEPN  T  +V  ACG
Sbjct: 64  ARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG 123

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF------------ 166
           +   L  GR +H  +     +  +  V + ++ MY  CG ++DA  +F            
Sbjct: 124 RAERLREGRQVHG-LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGI 182

Query: 167 ----DRVNDKDVVVWNSMIVGYA--------------MHGFGKDALQLFNEMCRIRLKPS 208
                RV+   V V+  M +                 M    KD L  F +M R  + PS
Sbjct: 183 RDKKRRVDGDAVEVFREMQMAEVPPNYVTLVRTTLGLMMCLAKDTLDHFEDMERAGVMPS 242

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           D+T+IGLLSAC+HAGLVNEGR FF+ M     +EP++EHYGCMV+LL RAG +EE+ +L+
Sbjct: 243 DVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELI 302

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328
           ++M I+PD V+W  LLGAC++HGN+ +G+++AE+L+     +SG+YV LSNIYA++GNW+
Sbjct: 303 LNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWE 362

Query: 329 GVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388
           GVA+VR +MKE  V+K+PGCS IEL   +HEFL  D  HPKSK+I+ ML+E++  L   G
Sbjct: 363 GVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVG 422

Query: 389 YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFK 448
           Y P T  VL ++ E+ K++SL  HSEK+A+AFGLISTQP T ++I KNLR+C DCH+  K
Sbjct: 423 YRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIK 482

Query: 449 LISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           LISK   RKI++RDR RFHHFVNG+CSC DYW
Sbjct: 483 LISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 514


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/472 (44%), Positives = 282/472 (59%), Gaps = 26/472 (5%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V   L+  YA  G +L A K+F    +   V+  ++L  YA  G+V A R  F  M+ +D
Sbjct: 115 VCNGLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARD 174

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIH 130
            V WN +I    ++G   EA+ +FR MLA  +  P+ VT                     
Sbjct: 175 TVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVT--------------------- 213

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMHGF 189
             +   + I+V  ++ +ALINMYSKC  ++ A  VF+ +  + +V  WN+M+ G+  +G 
Sbjct: 214 --LFPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGC 271

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
            + AL+LF  M    L P+ ITF  +L+AC+H G V EG   F  M   Y IEP + HYG
Sbjct: 272 SEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYG 331

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           CMV+L  RAG  ++A K++  M ++PD+ +W  L+GAC+ H N  LG K    LI     
Sbjct: 332 CMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPN 391

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           +   YVLLSNIYA  GNW GV +VR LM ++GVQK PG SSIE+   +HEF++GD  H  
Sbjct: 392 DHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSS 451

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQPG 428
            ++IY ML E+   LK  GYVP T  VL DI ++  K++SL +HSEKLA+AFGLIST PG
Sbjct: 452 KEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPG 511

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T I+I KNLRVC DCH   KL+SK  GR I++RD NRFHHF  G+CSCGD+W
Sbjct: 512 TPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 18/214 (8%)

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL LF  +L    +P+ V     L  C +     +   +HS+    R    + +V   LI
Sbjct: 62  ALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAK-RGAASHRRVCNGLI 120

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           + Y+ CGSL DAR VFDR ++ D V WNS++ GYA  G   +AL+ F    + R     +
Sbjct: 121 HAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAG-DVNALREFFVGMQAR---DTV 176

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTM-------KDEYAIEP----KVEHY--GCMVNLLSR 257
           ++  +++ C   G   E    F  M        D   + P    +VE      ++N+ S+
Sbjct: 177 SWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMYSK 236

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              +E A  +  ++  + +   W  +L     +G
Sbjct: 237 CACIEGAVHVFENLGAQMNVDTWNAMLAGFTANG 270



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 51/232 (21%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           + D     SL+  YA  GDV +  + F  M  R  VS  T++    + GE   A  +F +
Sbjct: 141 EGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTIIAWCVENGEYEEAIAVFRE 200

Query: 67  M---------------------EEK-----------------------------DVVCWN 76
           M                     EE+                             +V  WN
Sbjct: 201 MLASMECLPDRVTLFPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWN 260

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
            M+ G+  +G + +AL LF RM    + PN++T   VL+AC   G +E G      +   
Sbjct: 261 AMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKV 320

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
             I+ ++     +++++ + G    A  +   +  K D  VW +++     H
Sbjct: 321 YGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTH 372


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/441 (42%), Positives = 281/441 (63%), Gaps = 1/441 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +LV ++++   Y K G +     L   M  ++VV WN +I G AQ+G   E L  +  M 
Sbjct: 218 NLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMK 277

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
                P+++T V+V+S+C ++  L  G+ IH+ +  +    + V V ++LI+MYS+CG L
Sbjct: 278 MAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKA-GASLIVSVISSLISMYSRCGCL 336

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
           + +  VF    + DVV W+SMI  Y  HG G +A+ LFN+M + +L+ +D+TF+ LL AC
Sbjct: 337 EYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYAC 396

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           +H GL  +G +FF+ M ++Y ++P++EHY CMV+LL R G VEEA  L+  M ++ D + 
Sbjct: 397 SHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVIT 456

Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           W TLL AC++H    +  +I+E +   +  +   YVLLSNI+A+   WD V+ VR  M++
Sbjct: 457 WKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRD 516

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           + ++KEPG S +E+ N++H+F  GD  HPKS EI   L E+   +K  GYVP    VLHD
Sbjct: 517 RKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHD 576

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           +  + K+ SL  HSEKLA+AF L+ T  GT I+++KNLRVC DCH   K IS+ + R+I+
Sbjct: 577 MDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREII 636

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD +RFHHF NG CSCGDYW
Sbjct: 637 VRDSSRFHHFKNGRCSCGDYW 657



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 153/283 (54%), Gaps = 3/283 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D ++S  L++LY++ G + +A  LF  MP+++++S   ++  Y + G+   AR +FD+M 
Sbjct: 86  DKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMP 145

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E++V  WN M+ G  Q     E L LF RM      P+E    +VL  C  + AL +GR 
Sbjct: 146 ERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQ 205

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H Y+      + N+ V ++L +MY KCGSL +   +   +  ++VV WN++I G A +G
Sbjct: 206 VHGYVRKC-GFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNG 264

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
           + ++ L  +N M     +P  ITF+ ++S+C+    + +G++    +    A    V   
Sbjct: 265 YPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGA-SLIVSVI 323

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             ++++ SR G +E + K+ ++ +   D V W +++ A   HG
Sbjct: 324 SSLISMYSRCGCLEYSLKVFLECE-NGDVVCWSSMIAAYGFHG 365


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 289/479 (60%), Gaps = 32/479 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  +D D+Y+ +S++D+Y + G+VLS                                R
Sbjct: 251 LKSDIDCDVYIGSSIIDMYGKCGNVLSG-------------------------------R 279

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             FD ++ ++VV W  +I  Y Q+    EAL LF +M  + + PNE T   + ++   + 
Sbjct: 280 TFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLS 339

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G  +H+  E S  +K NV VG ALI MY K G +  A+ VF  +   +++ WN++I
Sbjct: 340 ALCLGDQLHARAEKS-GLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAII 398

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            G++ HG GK+AL +F +M     +P+ +TFIG++ ACAH  LV+EG  +FN +  ++ I
Sbjct: 399 TGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRI 458

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P +EHY C+V LLSR+G+++EA   +   +I  D V W TLL AC +H +   G KIAE
Sbjct: 459 VPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAE 518

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
           YL+     + GTY+LLSN++A +  WD V  +R LM+E+ V+KEPG S +E+ N  H F 
Sbjct: 519 YLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFT 578

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           + D++HP++  IY  ++++   ++  GYVP    VLHDI ++QK ++L  HSEKLAVA+G
Sbjct: 579 SEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYG 638

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L+ T  G  I ++KNLR+C DCH   KLISK   R I++RD NRFHHF NG CSCGDYW
Sbjct: 639 LMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 100/176 (56%), Gaps = 1/176 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y+K  +V AA  +   +   D+ C+N++++G  QH    EA+ + + +++E +E
Sbjct: 162 NALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIE 221

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N  T V +   C  +  +  G+ +H+ +  S +I  +V +G+++I+MY KCG++   R 
Sbjct: 222 WNNATYVTIFRLCASLKDITLGKQVHAQMLKS-DIDCDVYIGSSIIDMYGKCGNVLSGRT 280

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            FDR+  ++VV W S+I  Y  + F ++AL LF++M    + P++ T   L ++ A
Sbjct: 281 FFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAA 336



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EK 102
           L +++  Y K  EV+ AR LFD M  ++VV W+ ++ GY Q+G   E   LF++M+  + 
Sbjct: 60  LNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDN 119

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           + PNE      +S+C     +E G+  H Y   S  ++ +  V  ALI +YSKC  +  A
Sbjct: 120 IFPNEYVIATAISSCDSQMYVE-GKQCHGYALKS-GLEFHQYVKNALIQLYSKCSDVGAA 177

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +   V   D+  +N ++ G   H    +A+ +   +    ++ ++ T++ +   CA  
Sbjct: 178 IQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASL 237

Query: 223 GLVNEGRRFFNTMK------DEYAIEPKVEHYGCMVNLLS 256
             +  G++    M       D Y     ++ YG   N+LS
Sbjct: 238 KDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLS 277



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 127/265 (47%), Gaps = 21/265 (7%)

Query: 111 VAVLSACGQIGALESGRWIHSYI----ENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + +L        L+ GR IH+++     N R+ KVN Q+ + LIN+Y KC  +  AR +F
Sbjct: 23  IKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVN-QLNS-LINLYVKCDEVSIARKLF 80

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLV 225
           D +  ++VV W++++ GY  +G   +  +LF +M  +  + P++      +S+C     V
Sbjct: 81  DSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYV 140

Query: 226 NEGRRFFNTMKDEYAIEPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            EG++        YA++  +E +      ++ L S+   V  A +++  +    D   + 
Sbjct: 141 -EGKQCHG-----YALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVP-GNDIFCYN 193

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            ++     H ++A    + + +IS+ +  N+ TYV +  + A++ +     +V   M + 
Sbjct: 194 LVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS 253

Query: 341 GVQKEP--GCSSIELSNKVHEFLAG 363
            +  +   G S I++  K    L+G
Sbjct: 254 DIDCDVYIGSSIIDMYGKCGNVLSG 278


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/450 (42%), Positives = 291/450 (64%), Gaps = 12/450 (2%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V   +++  YA  G   AA  +F  + ++ +V WN  +D  A +G    AL LFR M  +
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 102 KVE--PNEVTAVAVLSACGQIGALESGRWIHSYI----ENSRNIKVNVQVGTALINMYSK 155
           + +  P+  T  +VL AC   GAL  G + H+ +      +  +  +V +  +L+++Y K
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGK 219

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIG 214
           CG+++ AR VFDR++++D+  WN+M++  A HG  +D+L LF+ M R+  L P+ ITF+ 
Sbjct: 220 CGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVA 279

Query: 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274
           +LSAC H GLV+EGRR+F  M  E+ I P++EHYGCMV++L+RAG +EEA  +V  M   
Sbjct: 280 VLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCR 339

Query: 275 PDSVLWGTLLGA-CRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNWDGVAR 332
           PDS++W +LL A C+ +  + L E +A+  +   + A SG YVLLS +YA+   W+ V  
Sbjct: 340 PDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVGM 399

Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
           +R LM ++G +KEPG SSIE+   VH+F+AGD  HP+S+EIY+ L+EI   L + GY P 
Sbjct: 400 IRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKPD 459

Query: 393 TQ--IVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLI 450
                ++ DI ++ K  +L +HSE+LA++FGL++  PG  I+I+KNLRVC DCH + KLI
Sbjct: 460 LSEAPMVADI-DRTKGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLI 518

Query: 451 SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           SK    +I++RDR RFHHF +G+CSC DYW
Sbjct: 519 SKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 548


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 276/436 (63%), Gaps = 3/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K GE+  A  +F +M   D V WN +I  +AQH   +EAL L++ M      
Sbjct: 422 SALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP 481

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            ++ T  +VL AC  +  LE GR  H ++        ++ +  AL++MY KCGSL+DA+ 
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGRQAHVHV---LKFDQDLILNNALLDMYCKCGSLEDAKF 538

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+R+  KDV+ W++MI G A +GF  +AL LF  M     KP+ IT +G+L AC+HAGL
Sbjct: 539 IFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGL 598

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           VNEG  +F +M + Y I+P  EHYGCM++LL RA ++++  KL+ +M  EPD V W TLL
Sbjct: 599 VNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLL 658

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR   N+ L    A+ ++  +  ++G YVLLSNIYA    W+ VA VR  MK++G++K
Sbjct: 659 DACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRK 718

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS IE++ ++H F+ GD  HP+  EI   L +    L   GYVP T  VL D+  +Q
Sbjct: 719 EPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQ 778

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           +++SL  HSEKLA+ FG++S     +I+I KNL++C DCH   KLI++   R I++RD  
Sbjct: 779 REDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPI 838

Query: 465 RFHHFVNGTCSCGDYW 480
           R+HHF +G CSCGDYW
Sbjct: 839 RYHHFQDGVCSCGDYW 854



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   +  A+VLFD M E++VV W  MI  Y+   L + A+ L   M  + V PN
Sbjct: 326 LINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPN 385

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +VL AC ++  L+    +HS+I     ++ +V V +ALI++YSK G L +A  VF
Sbjct: 386 MFTFSSVLRACERLYDLKQ---LHSWIMKV-GLESDVFVRSALIDVYSKMGELLEALKVF 441

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +   D VVWNS+I  +A H  G +AL L+  M R+       T   +L AC    L+ 
Sbjct: 442 REMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLE 501

Query: 227 EGRR-FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            GR+   + +K     +  +     ++++  + G +E+A K + +   + D + W T++ 
Sbjct: 502 LGRQAHVHVLK----FDQDLILNNALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMIA 556

Query: 286 ACRLHG 291
               +G
Sbjct: 557 GLAQNG 562



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           + L+    +L  Y K G +  A+ +F+ M +KDV+ W+ MI G AQ+G + EAL LF  M
Sbjct: 515 QDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESM 574

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             +  +PN +T + VL AC   G +  G +    + N   I    +    ++++  +   
Sbjct: 575 KVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEK 634

Query: 159 LKD-ARLVFDRVNDKDVVVWNSMI 181
           L D  +L+ +   + DVV W +++
Sbjct: 635 LDDMVKLIHEMNCEPDVVTWRTLL 658


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/435 (42%), Positives = 276/435 (63%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAK     AAR LFD+M  +DVV W  ++ G A+ G  + AL ++R M+A  VEP
Sbjct: 82  ALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEP 141

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +E    A LS+C     LE G+ +H+       ++  + VG +L++MY+K GSL++AR V
Sbjct: 142 DEYVVAAALSSCAGSTTLELGQSVHA-TAVRLGLEPFLSVGNSLVSMYAKTGSLREARKV 200

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD    +  V W ++IVGYA +G G+++LQ++ EM     +P  +TFIGLL AC+HAGLV
Sbjct: 201 FDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLV 260

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
           + GR  F +M+ ++ I P  +HY CMV++L RAG+++EA +L+    ++ D+ +W  LLG
Sbjct: 261 DAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLG 320

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR H N  L E+ AE +   +  ++  Y++LSN+Y+    W  VAR+RTLMK +G+ KE
Sbjct: 321 ACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAKE 380

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PGCS +  S   H F   D  HP++ EIY  +EE+   ++AEG+V  T   L D   + +
Sbjct: 381 PGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGR 440

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSE+LAVAFGL++   G  +++ KNLRVC DCH   K+++K  GR+I++RD N 
Sbjct: 441 EKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNC 500

Query: 466 FHHFVNGTCSCGDYW 480
           FHH  +G CSCGDYW
Sbjct: 501 FHHMRDGVCSCGDYW 515



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 34/218 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+  L+  L V  SLV +YA+ G +  A K+F            T L C          
Sbjct: 169 AVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFD----------ATRLRC---------- 208

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                       V W  +I GYAQ+G   E+L ++  M+     P+ VT + +L AC   
Sbjct: 209 -----------PVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHA 257

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
           G +++GR     ++    I         ++++  + G L +A  + D+   K D  VW +
Sbjct: 258 GLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKA 317

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++     H   + A +   EM   RL P+D     +LS
Sbjct: 318 LLGACRTHRNAELA-ERAAEMV-WRLDPTDAVPYIMLS 353


>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
          Length = 598

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/431 (43%), Positives = 281/431 (65%), Gaps = 9/431 (2%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAV 111
           K GE   A+ +     +++V+ WN+MI GY ++    EAL   + ML+   ++PN+ +  
Sbjct: 174 KTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFA 233

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           + L+AC ++G L   +W+HS + ++  I++N  + +AL+++Y+KCG ++ +R VF  V  
Sbjct: 234 SALAACARLGDLHHAKWVHSLMIDA-GIELNTILSSALVDVYAKCGDIETSREVFYSVKW 292

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            DV +WN+MI G+A HG   +A+++F+EM    + P  ITF+G+L+AC+H GL+ EG+ F
Sbjct: 293 NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGLLEEGKEF 352

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           F  M   ++I+PK+EHYG MV+LL RAGQV+EAY L+  M IEPD V+W +LL + R + 
Sbjct: 353 FGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLLSSARTYK 412

Query: 292 NIALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           N  LGE     +  QNL  A SG YVLLSNIY++   W+   +VR LM ++G++K  G S
Sbjct: 413 NPELGE-----IAIQNLSKAKSGDYVLLSNIYSSTKKWENAQKVRELMTKEGIRKAKGKS 467

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            +E    +H F AGD  H  +K IY +LE +    K+EG+V  T +VL D+ E++K+ +L
Sbjct: 468 WVEFGGVIHRFKAGDTSHIDTKAIYKVLEGLIQKAKSEGFVSDTDLVLMDVSEEEKEENL 527

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEKLA+A+ ++ + PG+ I+I KN+R+C DCH   K +SK   R I+MRDR RFH F
Sbjct: 528 NYHSEKLALAYVILKSSPGSEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRF 587

Query: 470 VNGTCSCGDYW 480
            +G CSC DYW
Sbjct: 588 EDGLCSCKDYW 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 10/184 (5%)

Query: 21  ARGGDVLSAEKLFATMPQRSLVSLTTMLTC-----YAKQGEVAAARVLFDDMEEKDVVCW 75
           AR GD+  A+ + + M     + L T+L+      YAK G++  +R +F  ++  DV  W
Sbjct: 240 ARLGDLHHAKWVHSLMIDAG-IELNTILSSALVDVYAKCGDIETSREVFYSVKWNDVSIW 298

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
           N MI G+A HGLA EA+ +F  M AE V P+ +T + +L+AC   G LE G+     +  
Sbjct: 299 NAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGLLEEGKEFFGLMSQ 358

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVG---YAMHGFGK 191
             +I+  ++   A++++  + G +K+A  + + +  + DVV+W S++     Y     G+
Sbjct: 359 RFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLLSSARTYKNPELGE 418

Query: 192 DALQ 195
            A+Q
Sbjct: 419 IAIQ 422



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKP 207
           +I    K G    A+ V  R +D++V+ WN MI GY  +   ++AL+    M     +KP
Sbjct: 168 IIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKP 227

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           +  +F   L+ACA  G ++  +   + M D   IE        +V++ ++ G +E + ++
Sbjct: 228 NKFSFASALAACARLGDLHHAKWVHSLMIDA-GIELNTILSSALVDVYAKCGDIETSREV 286

Query: 268 VMDMKIEPDSVLWGTLLGACRLHG 291
              +K   D  +W  ++     HG
Sbjct: 287 FYSVKWN-DVSIWNAMITGFATHG 309


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/483 (40%), Positives = 296/483 (61%), Gaps = 13/483 (2%)

Query: 7   DKDLYVST------SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           DK  +V+T      +L DL  R G ++ +  L A +   ++V+ T ++  Y K G +  A
Sbjct: 9   DKICFVATLNACGGALADL--RLGKLIHSCVLEAGLESNTVVA-TALVNMYGKAGCLDEA 65

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVEPNEVTAVAVLSAC 117
             +F  +  KD+V W  ++  Y++  L  EAL LFR M     +  +P+      +L AC
Sbjct: 66  TRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAFLLQAC 125

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             + A   GR  H  I+       +  +G  +INMY KCG+L+ A  VFD ++++D V W
Sbjct: 126 ATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAW 185

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
            ++I GYA HG  +++L +F  M +   KP  ++ + +LS C+HAGLV +G  FF  +  
Sbjct: 186 TTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITK 245

Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
           E+ +EP  +HYGCM++LL R+G +E A  ++  M  +  ++ W   L AC++H +   G+
Sbjct: 246 EFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGK 305

Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
           + AE ++      +  YV LSNIYAA G WD V RVR+ MK  G+QK+PG SSIE++++V
Sbjct: 306 RAAEKVLELEPVPA-AYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRV 364

Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
           HEF AGD  HP++ EIY +LE +   ++  GYVP T++VL ++ E+QK+  L  HSEKLA
Sbjct: 365 HEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHSEKLA 424

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL+ST  G+S++I+KNLRVC DCH   K +S+  GR+I MRD  RFHHF +G CSCG
Sbjct: 425 IAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRIAGREIFMRDSQRFHHFQDGHCSCG 484

Query: 478 DYW 480
           DYW
Sbjct: 485 DYW 487


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/436 (42%), Positives = 274/436 (62%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K G+   AR +FD ++ ++VV W  ++    Q+G   EAL LF +M  E V+
Sbjct: 273 SAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVK 332

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NE T   +L+AC  + A  +G  +H + E S   K +V VG ALINMY+K G ++ A+ 
Sbjct: 333 SNEFTYAVLLNACAGLSARRNGSLLHGHSEKS-GFKHHVMVGNALINMYAKSGDIEAAKK 391

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +  +D++ WN+MI G++ HG GK AL +F +M      P+ +TF G+LSAC H GL
Sbjct: 392 VFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGL 451

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG  + + +  ++ ++P +EHY C+V+LLS+ GQ+ EA   +    ++ D V W TLL
Sbjct: 452 VQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLL 511

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            AC +H N  LG  +AE+++  +  + GTY LLSNIYA    WDGV +VR LM++K ++K
Sbjct: 512 NACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKK 571

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S IE+ N  H F + D +HP   + Y  ++E+   +K  GY P    VLHD+ ++Q
Sbjct: 572 EPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQ 631

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+A+GL+      SI ++KNLR+C DCH+  +LISK T R I++RD N
Sbjct: 632 KEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDAN 691

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSC DYW
Sbjct: 692 RFHHFRDGRCSCLDYW 707



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 160/310 (51%), Gaps = 17/310 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +++ Y+K   V  A  +++++   D+V +N ++    ++G   E L + R M++E V+
Sbjct: 172 NALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVK 231

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            ++VT V   S C  +  L  G  +H  +  S +++ +  V +A+INMY KCG    AR 
Sbjct: 232 WDKVTFVNAFSLCASLKDLRLGLHVHGKMLTS-DVECDAYVSSAIINMYGKCGKSLMARG 290

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  ++VV+W +++     +G  ++AL LF++M +  +K ++ T+  LL+ACA    
Sbjct: 291 VFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSA 350

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              G    +   ++   +  V     ++N+ +++G +E A K+  DM +  D + W  ++
Sbjct: 351 RRNG-SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDM-MHRDIITWNAMI 408

Query: 285 GACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSNIYAAIGNW----DGVARVRTLM 337
                HG   LG+K    L+ Q++  +     YV  + + +A G+     +G   +  LM
Sbjct: 409 CGFSHHG---LGKK--ALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLM 463

Query: 338 KEKGVQKEPG 347
           K+ GVQ  PG
Sbjct: 464 KQFGVQ--PG 471



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 146/296 (49%), Gaps = 19/296 (6%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           + S++ + +++  YAK  +V+ A  LFD M E++VV W+ ++ GY  +G + + + L + 
Sbjct: 63  ENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKD 122

Query: 98  MLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
           M++E  V PNE      +S+C   G +E GR  H  +  +     +  V  AL++MYSKC
Sbjct: 123 MISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKT-GFSFHNYVRNALVSMYSKC 181

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
             ++DA  V++ V   D+V +NS++     +G+ ++ L++   M    +K   +TF+   
Sbjct: 182 SIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAF 241

Query: 217 SACA-----HAGLVNEGRRFFNTMK-DEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVM 269
           S CA       GL   G+   + ++ D Y     +  YG C  +L++R          V 
Sbjct: 242 SLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARG---------VF 292

Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAI 324
           D     + VLW  ++ +C  +G       +   +  +N+ +N  TY +L N  A +
Sbjct: 293 DGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGL 348



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 40/210 (19%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V  +L+++YA+ GD+ +A+K+F+ M  R +++   M                        
Sbjct: 372 VGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAM------------------------ 407

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                  I G++ HGL  +AL++F+ MLA +  PN VT   VLSACG +G ++ G +   
Sbjct: 408 -------ICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLH 460

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH--- 187
           ++     ++  ++  T ++++ SK G L +AR        K DVV W +++    +H   
Sbjct: 461 HLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNY 520

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           G G+   +   EM      P+D+    LLS
Sbjct: 521 GLGRWVAEFVLEM-----DPNDVGTYTLLS 545



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 110/215 (51%), Gaps = 12/215 (5%)

Query: 103 VEPNEVTA------VAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSK 155
           + PN V+       + +L        L+ G+ IHS+ I  SR  + ++    +LIN Y+K
Sbjct: 19  LRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAK 78

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIG 214
              +  A  +FDR+ +++VV W++++ GY ++GF    ++L  +M     + P++     
Sbjct: 79  VNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAI 138

Query: 215 LLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
            +S+C   G V EGR+     +K  ++    V +   +V++ S+   V++A  +  ++ +
Sbjct: 139 AISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRN--ALVSMYSKCSIVQDAMGVWNEVPV 196

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             D V + ++L +   +G +  G ++   ++S+++
Sbjct: 197 N-DIVAYNSILSSLVENGYLREGLEVLRSMVSESV 230


>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
          Length = 602

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/427 (44%), Positives = 279/427 (65%), Gaps = 7/427 (1%)

Query: 61  RVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK---VEPNEVTAVAVLS 115
           R +F++M    +D+V WN +I  +AQ+GLA EA+ L+RRM   +   VEP+ VT V VLS
Sbjct: 176 RQVFEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLS 235

Query: 116 ACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
           +C   GA   G  +  Y+ ++    + N+ +  ALIN +++CGSL  A+ +FD + ++ V
Sbjct: 236 SCAHTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSV 295

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
           V W ++I+GY MHG G  A+ LF  M      P  +  +GLLSAC+HAG+ +EGR++F+T
Sbjct: 296 VSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFST 355

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           M+ +Y + PK+EHY CMV+LL RAG+++EA +L+  M +  D  +WG LLGAC++H N+ 
Sbjct: 356 MERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVE 415

Query: 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS 354
           +GE+  E ++S   AN G YVL++NIYA  G  DGVA+VR  M+ +G++KEPGCS +E  
Sbjct: 416 MGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHK 475

Query: 355 NKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHS 413
            KVH F+A D  HP+++ IY ++ E+   +K + G     +     + E      +  HS
Sbjct: 476 GKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHS 535

Query: 414 EKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGT 473
           EKLAVAFGL++T+ G+ I ++KNLRVC DCH+  K IS+ T R  ++RD +RFH F NG 
Sbjct: 536 EKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGA 595

Query: 474 CSCGDYW 480
           CSC DYW
Sbjct: 596 CSCRDYW 602



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 3/173 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  +A+ G +A A+ LFD+M E+ VV W  +I GY  HG  + A+ LF  M++E   P
Sbjct: 269 ALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAP 328

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-L 164
           + V  V +LSAC   G  + GR   S +E    ++  ++  T ++++  + G L +AR L
Sbjct: 329 DSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEAREL 388

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +       D  VW +++    +H   +   + F  +  + L+P+++ +  L++
Sbjct: 389 IASMPMAADGAVWGALLGACKIHKNVEMGEEAFERV--VSLEPANVGYYVLMA 439


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/437 (42%), Positives = 273/437 (62%), Gaps = 3/437 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAK     AAR +FD+M  +DVV W  ++ G A+    + AL ++R M+A  V P
Sbjct: 79  ALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGP 138

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +E    A LS+C    ALE GR +H+       +   + VG +L++MY+K GSL +A+ V
Sbjct: 139 DEFAVAAALSSCAGATALELGRSVHAAAVRL-ALDPFLSVGNSLVSMYAKTGSLGEAKKV 197

Query: 166 FD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           FD  RV+  D + W ++IVGYA +G G+++L+++ +M R   +P  +TFIGLL AC+HAG
Sbjct: 198 FDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAG 257

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV+ GR  F +M+ E+ I P  +HY CMV+LL RAG+++EA  L+       D+ +W  L
Sbjct: 258 LVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKAL 317

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L ACR H N  L E  A  +   +  ++  YV+LSN+Y+  G W  VARVRT MK +G+ 
Sbjct: 318 LAACRTHRNAELAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGDVARVRTSMKARGIT 377

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPGCS +  +   H F   D RHP++ E+Y  +EE+   ++ +GYV  T   L D G +
Sbjct: 378 KEPGCSWVAANGVTHLFYVEDRRHPRAAEVYRKVEEMTERIRGQGYVADTAWALQDEGPE 437

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            ++  L  HSE+LAVAFGL++   G  I++ KNLRVC DCHA  K++++  GR+I++RD 
Sbjct: 438 GREKGLAHHSERLAVAFGLLAVPAGAPIRVFKNLRVCGDCHAAIKMVAQAYGREIVLRDS 497

Query: 464 NRFHHFVNGTCSCGDYW 480
           N FHH  +G CSCGDYW
Sbjct: 498 NCFHHMKDGACSCGDYW 514



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 5/213 (2%)

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
           V +N  I   ++ GL   AL L   M A     +E T    L++   +        +HS 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPALNSAALLRLPADA--LHSL 64

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
           +  +  +  ++ V  AL++ Y+K      AR VFD +  +DVV W S++ G A       
Sbjct: 65  LLRA-GLAAHLHVANALVDAYAKLSRHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDS 123

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           ALQ++ +M    + P +      LS+CA A  +  GR   +      A++P +     +V
Sbjct: 124 ALQVYRDMVAAGVGPDEFAVAAALSSCAGATALELGRS-VHAAAVRLALDPFLSVGNSLV 182

Query: 253 NLLSRAGQVEEAYKLVMDMKIEP-DSVLWGTLL 284
           ++ ++ G + EA K+    +++  D + W  L+
Sbjct: 183 SMYAKTGSLGEAKKVFDATRVDRCDPITWTALI 215



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 33/238 (13%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+ +LD  L V  SLV +YA+ G +  A+K+F                         A 
Sbjct: 166 AVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVF------------------------DAT 201

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           RV     +  D + W  +I GYAQ+G   E+L ++  M+     P+ VT + +L AC   
Sbjct: 202 RV-----DRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHA 256

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
           G +++GR     ++    I         ++++  + G L +A  + +R   + D  VW +
Sbjct: 257 GLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKA 316

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMK 236
           ++     H   +  L         RL P+D + ++ L +  + AG   +  R   +MK
Sbjct: 317 LLAACRTHRNAE--LAEHAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGDVARVRTSMK 372


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 298/479 (62%), Gaps = 16/479 (3%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +KF  D D ++ +SLV++Y + G +  A  +   +P   L           ++G    AR
Sbjct: 549  LKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVL-----------RKGN---AR 594

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            V + +  +  +V W  M+ GY  +G   + L  FR M+ E V  +  T   ++SAC   G
Sbjct: 595  VSYKE-PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAG 653

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             LE GR +H+Y++   + +++  VG++LI+MYSK GSL DA +VF + N+ ++V+W SMI
Sbjct: 654  ILEFGRHVHAYVQKIGH-RIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMI 712

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             GYA+HG G  A+ LF EM    + P+++TF+G+L+AC+HAGL+ EG R+F  MKD Y I
Sbjct: 713  SGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCI 772

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P VEH   MV+L  RAG + +    +    I   + +W + L +CRLH N+ +G+ ++E
Sbjct: 773  NPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSE 832

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L+    ++ G YVLLSN+ A+   WD  ARVR+LM ++GV+K+PG S I+L +++H F+
Sbjct: 833  MLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFV 892

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP+  EIY  L+ + G LK  GY    ++V+ D+ E+Q +  +  HSEKLAV FG
Sbjct: 893  MGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFG 952

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I+T   T I+I+KNLR+C DCH   K  S+   R+I++RD +RFHHF +G+CSCGDYW
Sbjct: 953  IINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 171/354 (48%), Gaps = 26/354 (7%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D D+ +  S++DLY +      AE+LF  M +  +VS   M+  Y + G+V  +  +F 
Sbjct: 421 IDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFR 480

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            +  KDVV WN ++DG  Q G    AL     M+    E + VT    L     +  +E 
Sbjct: 481 RLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVEL 540

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD------------RVNDKD 173
           GR +H  +        +  + ++L+ MY KCG +  A ++              RV+ K+
Sbjct: 541 GRQLHGMVLKF-GFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKE 599

Query: 174 ----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEG 228
               +V W SM+ GY  +G  +D L+ F  M R  L   DI T   ++SACA+AG++  G
Sbjct: 600 PKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVR-ELVVVDIRTVTTIISACANAGILEFG 658

Query: 229 RRFFNTMKDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           R     ++    I  +++ Y    ++++ S++G +++A+ +V     EP+ V+W +++  
Sbjct: 659 RHVHAYVQK---IGHRIDAYVGSSLIDMYSKSGSLDDAW-MVFRQSNEPNIVMWTSMISG 714

Query: 287 CRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
             LHG       + E +++Q  + N  T++ + N  +  G  +   R   +MK+
Sbjct: 715 YALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKD 768



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +LT YAK   +A A+ LFD++ +++   W ++I G+A+ G +     LFR M A+   PN
Sbjct: 330 LLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPN 389

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + T  +VL  C     L+ G+ +H+++  +  I V+V +G +++++Y KC   + A  +F
Sbjct: 390 QYTLSSVLKCCSLDNNLQLGKGVHAWMLRN-GIDVDVVLGNSILDLYLKCKVFEYAERLF 448

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
           + +N+ DVV WN MI  Y   G  + +L +F  +
Sbjct: 449 ELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRL 482



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ +Y+K  ++  A+ +FD +  ++   W  +I G+A  G  +    LF EM      P+
Sbjct: 330 LLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPN 389

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             T   +L  C+    +  G+     M     I+  V     +++L  +    E A +L 
Sbjct: 390 QYTLSSVLKCCSLDNNLQLGKGVHAWMLRN-GIDVDVVLGNSILDLYLKCKVFEYAERL- 447

Query: 269 MDMKIEPDSVLWGTLLGACRLHGNI 293
            ++  E D V W  ++GA    G++
Sbjct: 448 FELMNEGDVVSWNIMIGAYLRAGDV 472


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/442 (45%), Positives = 284/442 (64%), Gaps = 22/442 (4%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y   G +  AR +FD+M E+ +V WN MID   + G  + AL LFR M  +  EP+  T 
Sbjct: 177 YGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDM-QKSFEPDGYTM 235

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFDR 168
            +VLSAC  +G+L  G W H ++  + ++ V  +V +  +LI MY KCGSL+ A  VF  
Sbjct: 236 QSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQG 295

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVN 226
           +   D+  WN+MI+G+A HG  ++A+  F+ M +    +KP+ +TF+ LL AC H G+VN
Sbjct: 296 MRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVN 355

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +GR++F+ M  EY IEP +EHYGC+++LL+RAG + EA  +VM M ++PD+V+W +LL A
Sbjct: 356 KGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDA 415

Query: 287 CRLHG-NIALGEKIAEYLI-------SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           C   G ++ L E+IA  +I       S N   SG YVLLS +YA+   W+ V  VR LM 
Sbjct: 416 CCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMS 475

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           + G++KEPGCSSIE++   +EF AGD  HP++K+IY  L+ I+  L++         ++ 
Sbjct: 476 DHGIRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRLRS---------IVD 526

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
              +  K+ SL +HSE+LA+AFGLIS  P T I+I KNLRVC DCH V KLISK    +I
Sbjct: 527 ATNDSSKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEI 586

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDR RFHHF +G+CSC DYW
Sbjct: 587 IVRDRVRFHHFKDGSCSCLDYW 608



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 27  LSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
           L A  L  T P    +L     +L   +   +V  A  +FD +E      WN +I   A 
Sbjct: 48  LHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAH 107

Query: 85  H-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
                 EA +L+R+ML   +  P++ T   VL AC  I  L  G+ +H  I        +
Sbjct: 108 DVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVK-HGFSGD 166

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V V   LI+ Y  CG L  AR VFD + ++ +V WNSMI      G    ALQLF +M +
Sbjct: 167 VYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQK 226

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEG 228
              +P   T   +LSACA  G ++ G
Sbjct: 227 -SFEPDGYTMQSVLSACAGLGSLSLG 251



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KV 103
           +++  Y K G +  A  +F  M + D+  WN MI G+A HG A EA+  F  M+ E   V
Sbjct: 275 SLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNV 334

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
           +PN VT VA+L AC   G +  GR     +     I+  ++    +I++ ++ G + +A 
Sbjct: 335 KPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAI 394

Query: 163 RLVFDRVNDKDVVVWNSMI 181
            +V       D V+W S++
Sbjct: 395 DMVMSMPMKPDAVIWRSLL 413


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/488 (40%), Positives = 291/488 (59%), Gaps = 9/488 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTT----MLTCYAK-QGE 56
           V+  L  D++   S++  +    D++   +    M +      +     ++  Y+K  G 
Sbjct: 235 VRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGS 294

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQH-GLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
           +   R +F+++   D+V WN MI G++ +  L+ + L  FR M      P++ + V V S
Sbjct: 295 MVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTS 354

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           AC  + +   G+ +H+    S      V V  AL+ MYSKCG++ DAR VFD + + + V
Sbjct: 355 ACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTV 414

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
             NSMI GYA HG   ++L+LF  M    + P+ ITFI +LSAC H G V EG+++FN M
Sbjct: 415 SLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMM 474

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIAL 295
           K+ + IEP+ EHY CM++LL RAG+++EA +++  M   P S+ W TLLGACR HGN+ L
Sbjct: 475 KERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVEL 534

Query: 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN 355
             K A   +     N+  YV+LSN+YA+   W+  A V+ LM+E+GV+K+PGCS IE+  
Sbjct: 535 AVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDK 594

Query: 356 KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL---HDIGEKQKQNSLEVH 412
           KVH F+A D  HP  KEI++ + ++   +K  GYVP  +  L    ++   +++  L  H
Sbjct: 595 KVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYH 654

Query: 413 SEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNG 472
           SEKLAVAFGLIST+ G  I +VKNLR+C DCH   KLIS  TGR+I +RD +RFH F  G
Sbjct: 655 SEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEG 714

Query: 473 TCSCGDYW 480
            CSC DYW
Sbjct: 715 HCSCRDYW 722



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 141/290 (48%), Gaps = 13/290 (4%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+S     LY++ G + +A+  F      ++ S  T++  YAK   +  AR +FD++ + 
Sbjct: 45  YLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQP 104

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D+V +N +I  YA  G     L LF  +   ++  +  T   V++ACG    L   R +H
Sbjct: 105 DIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLV--RQLH 162

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMH 187
            ++    +      V  A++  YS+ G L +AR VF  + +   +D V WN+MIV    H
Sbjct: 163 CFVVVCGH-DCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQH 221

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVE 246
             G +A+ LF EM R  LK    T   +L+A      +  GR+F   M K  +       
Sbjct: 222 REGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGN---S 278

Query: 247 HYGC-MVNLLSR-AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294
           H G  +++L S+ AG + E  K+  ++   PD VLW T++    L+ +++
Sbjct: 279 HVGSGLIDLYSKCAGSMVECRKVFEEI-TAPDLVLWNTMISGFSLYEDLS 327


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/436 (42%), Positives = 278/436 (63%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  Y K G +  AR +FD + E+D V    +I GYAQ GL +EAL LFR++ +  ++
Sbjct: 181 SSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQ 240

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N VT   +L++   + +L  G+ +H  I   + +   + +  +LI+MYSKCG L  +R 
Sbjct: 241 CNYVTFTTLLTSLSGLASLNYGKQVHGLILR-KELPFFIVLQNSLIDMYSKCGKLLYSRR 299

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +  + WN+M++GY  HG G++ +QLF  M    +KP  +T + +LS C+H GL
Sbjct: 300 VFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE-EVKPDSVTLLAVLSGCSHGGL 358

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG   F+ +  E      + HYGC+++LL R+GQ+++A  L+  M  EP   +WG+LL
Sbjct: 359 VDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLL 418

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           GACR+H N+++GE +A+ L+     N+G YV+LSNIYAA G W  V RVR LM E  V K
Sbjct: 419 GACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTK 478

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EP  S I L   +H F + +  HP+ K+I   ++E+   +KA G+VP    VLHD+ ++Q
Sbjct: 479 EPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQ 538

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L  HSEKLA+ FGL++T PG +I+++KNLR+C DCH   K +SK  GR+I +RD+N
Sbjct: 539 KERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKN 598

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH   +G C+CGDYW
Sbjct: 599 RFHLLKDGACTCGDYW 614



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 94/167 (56%), Gaps = 3/167 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A ++AC +  AL  GR +H+++  +R  +  V + T LI +Y +CG+L DAR V D + +
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKAR-YRPPVYLATRLIILYVRCGALDDARNVLDGMPE 104

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++VV W +MI GY+  G   +AL+LF  M R   K ++ T   +L++C     + +  + 
Sbjct: 105 RNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQ- 163

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            +++  +   E  +     ++++  ++G ++EA K V DM  E D+V
Sbjct: 164 VHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARK-VFDMLPERDTV 209



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 8/165 (4%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G +L  E  F  + Q SL+ +      Y+K G++  +R +FD+M ++  + WN M+ GY 
Sbjct: 267 GLILRKELPFFIVLQNSLIDM------YSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYG 320

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
           +HG+  E + LFR M  E+V+P+ VT +AVLS C   G ++ G  I   I   +N  +++
Sbjct: 321 RHGIGQEVVQLFRTM-TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHI 379

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
                +I++  + G L+ A  + + +  +    +W S++    +H
Sbjct: 380 GHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVH 424


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/480 (39%), Positives = 290/480 (60%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K   + DL+V  +L+D YA+  D+ S+ K+F+++                        
Sbjct: 390 AIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL------------------------ 425

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                   + + V WN ++ G++Q GL  EAL +F  M A ++   +VT  +VL AC   
Sbjct: 426 -------RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 478

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            ++     IH  IE S     +  +G +LI+ Y+KCG ++DA  VF  + ++D++ WN++
Sbjct: 479 ASIRHAGQIHCSIEKS-TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAI 537

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GYA+HG   DAL+LF+ M +  ++ +DITF+ LLS C+  GLVN G   F++M+ ++ 
Sbjct: 538 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHG 597

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P +EHY C+V LL RAG++ +A + + D+   P +++W  LL +C +H N+ALG   A
Sbjct: 598 IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSA 657

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E ++     +  TYVLLSN+YAA G+ D VA +R  M+  GV+K PG S +E+  ++H F
Sbjct: 658 EKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAF 717

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             G + HP  + I  MLE +N     EGY+P   +VLHD+ ++QK   L VHSE+LA+A+
Sbjct: 718 SVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAY 777

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+ T PG  I+I+KNLR C DCH  F +ISK   R+I++RD NRFHHF +G CSCGDYW
Sbjct: 778 GLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 153/286 (53%), Gaps = 14/286 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +L  YAK G++  AR+ F+ +   DV+  + MI  YAQ     +A  LF R++   V P
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 362

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKD 161
           NE +  +VL AC  +  L+ G+ IH++      IK+    ++ VG AL++ Y+KC  +  
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHA-----IKIGHESDLFVGNALMDFYAKCNDMDS 417

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           +  +F  + D + V WN+++VG++  G G++AL +F EM   ++  + +T+  +L ACA 
Sbjct: 418 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 222 -AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            A + + G+   +  K  +  +  + +   +++  ++ G + +A K+   + +E D + W
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISW 534

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIG 325
             ++    LHG  A   ++ + +   N+ +N  T+V L ++ ++ G
Sbjct: 535 NAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTG 580



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 121/246 (49%), Gaps = 15/246 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+    V+ A  +F+ +  KD V W  M+  Y+++     A  +F +M     +
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN     +VL A   + ++  G+ IH     + N      VG AL++MY+KCG +KDARL
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLN-DTEPHVGGALLDMYAKCGDIKDARL 319

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F+ +   DV++ + MI  YA     + A +LF  + R  + P++ +   +L AC +   
Sbjct: 320 AFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ 379

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYG------CMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           ++ G++  N     +AI  K+ H         +++  ++   ++ + K+   ++ + + V
Sbjct: 380 LDFGKQIHN-----HAI--KIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR-DANEV 431

Query: 279 LWGTLL 284
            W T++
Sbjct: 432 SWNTIV 437



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L     +L  Y K G +A+AR LFD M E+++V +  ++  +AQ G    A  LFRR+  
Sbjct: 96  LFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRW 155

Query: 101 EKVEPNEVTAVAVL------SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           E  E N+     +L       A G  G + S  W   +  N+        VG+ LI+ YS
Sbjct: 156 EGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF-------VGSGLIDAYS 208

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
            C  + DA  VF+ +  KD VVW +M+  Y+ +   ++A ++F++M     KP+      
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTS 268

Query: 215 LLSA--CAHAGLVNEGRR--FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           +L A  C  + ++ +G       T+ D    EP V   G ++++ ++ G +++A +L  +
Sbjct: 269 VLKAAVCLPSVVLGKGIHGCAIKTLNDT---EPHVG--GALLDMYAKCGDIKDA-RLAFE 322

Query: 271 MKIEPDSVL 279
           M    D +L
Sbjct: 323 MIPYDDVIL 331



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 47/254 (18%)

Query: 114 LSACGQIGALESGRWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           L  C   G    GR +H ++     + ++++     L+NMY K G L  AR +FDR+ ++
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEM-------------------------------- 200
           ++V + +++  +A  G  + A  LF  +                                
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 201 -CRIRLKPSDITFI--GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
            C  +L      F+  GL+ A +   LV++    FN +  + A+      +  MV+  S 
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVV-----WTAMVSCYSE 240

Query: 258 AGQVEEAYKLVMDMKI---EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314
               E A+++   M++   +P+     ++L A     ++ LG+ I    I + L ++  +
Sbjct: 241 NDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAI-KTLNDTEPH 299

Query: 315 V--LLSNIYAAIGN 326
           V   L ++YA  G+
Sbjct: 300 VGGALLDMYAKCGD 313


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 292/480 (60%), Gaps = 36/480 (7%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  LD D++V +SL+D                                Y K G++ + R
Sbjct: 198 IKVGLDSDVFVRSSLID-------------------------------AYMKLGDLDSGR 226

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD+M   D+V WN +I G+AQ G    A+ LF RM       N+ T  +VL AC  + 
Sbjct: 227 GVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMV 286

Query: 122 ALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            LE GR +H+++ +  R++ ++     AL++MY KCG L DA  +F R++D+DV+ W++M
Sbjct: 287 MLEVGRQVHAHVLKYDRDLILH----NALLDMYCKCGCLLDADALFSRMHDRDVISWSTM 342

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I G A +G   +AL++F+ M      P++IT +G+L AC+HAGLV +G  +F +M   + 
Sbjct: 343 ISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFG 402

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P+ EH  CMV+LL RAG+++EA K + +MK EPDSV+W TLLGACR+H N  L    A
Sbjct: 403 IQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAA 462

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             ++     + G  +LLSNIYA +  W    +    M+++GV+KEPG S IEL   VH F
Sbjct: 463 TEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVF 522

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AG+L HP S  I   L  +    K  GYVPQT+ VL D+G +QK++ L+ HSEKLA+AF
Sbjct: 523 IAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAF 582

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G +++  G  ++I+KNLR+C DCHA  KL+SK  G+ I++RD  RFHHF +G CSCGDYW
Sbjct: 583 GTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 142/312 (45%), Gaps = 17/312 (5%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ-HGLANEALVLFRRM 98
           SL    ++++ YAK G +  A  LF  M +++VV W  ++   A   G   EAL     M
Sbjct: 106 SLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEM 165

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             + V  N  T  +VL ACG  G L +   +H+ I     +  +V V ++LI+ Y K G 
Sbjct: 166 RRDGVAANSYTFSSVLGACGTPGVLAA---MHADIIKV-GLDSDVFVRSSLIDAYMKLGD 221

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L   R VFD +   D+VVWNS+I G+A  G G  A++LF  M       +  T   +L A
Sbjct: 222 LDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRA 281

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C    ++  GR+    +      +  +  +  ++++  + G + +A  L   M  + D +
Sbjct: 282 CTGMVMLEVGRQVHAHV---LKYDRDLILHNALLDMYCKCGCLLDADALFSRMH-DRDVI 337

Query: 279 LWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333
            W T++     +G      K+     AE     N+   G  VL +  +A +   DG    
Sbjct: 338 SWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVG--VLFACSHAGLVE-DGWHYF 394

Query: 334 RTLMKEKGVQKE 345
           R++ K  G+Q E
Sbjct: 395 RSMDKLFGIQPE 406



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 30/255 (11%)

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE-----NSRNIK 140
           G    AL L   + A  V  + V+   ++  C + G +  GR IH ++            
Sbjct: 45  GPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATH 104

Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA-MHGFGKDALQLFNE 199
            ++ V  +L++MY+K G L DA  +F  +  ++VV W +++   A   G  K+AL+   E
Sbjct: 105 GSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVE 164

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           M R  +  +  TF  +L AC   G++              A+   +   G   ++  R+ 
Sbjct: 165 MRRDGVAANSYTFSSVLGACGTPGVLA-------------AMHADIIKVGLDSDVFVRSS 211

Query: 260 QVEEAYKL--------VMDMKIEPDSVLWGTLLGACRLHGN-IALGEKIAEYLISQNLAN 310
            ++   KL        V D  +  D V+W +++      G+ +   E       S  LAN
Sbjct: 212 LIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLAN 271

Query: 311 SGTYVLLSNIYAAIG 325
            GT  L S + A  G
Sbjct: 272 QGT--LTSVLRACTG 284


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/478 (43%), Positives = 290/478 (60%), Gaps = 5/478 (1%)

Query: 4   FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
           F+    L    +L+DL A G +V   +++  T     +     ++  YAK G V  A  +
Sbjct: 167 FTYPPVLKACAALLDLGA-GREV--HDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAV 223

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           FD    +D V WN MI    Q+G   EAL L R M AE + P  VT V+ +SA    GAL
Sbjct: 224 FDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGAL 283

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
             GR +H Y    R      ++ T+L++MY+K G +  AR++FD++  ++++ WN+MI G
Sbjct: 284 PRGRELHGY-GWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICG 342

Query: 184 YAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           + MHG    A +LF  M    ++ P  ITF+G+LSAC H G+V E +  F+ M   Y+I+
Sbjct: 343 FGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIK 402

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
           P V+HY C+V++L  +G+ +EA  ++  M ++PDS +WG LL  C++H N+ L E     
Sbjct: 403 PMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHK 462

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           LI     ++G YVLLSNIYA  G W+  ARVR LM  +G++K   CS IEL  K H FL 
Sbjct: 463 LIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLV 522

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP+S EIY  LE + G +   GYVP T  V H++ + +K+N +  HSE+LA+AFGL
Sbjct: 523 GDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGL 582

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IST PGT + + KNLRVC DCH V KLIS+   R+I++RD NR+HHFVNG CSC D+W
Sbjct: 583 ISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 143/274 (52%), Gaps = 8/274 (2%)

Query: 22  RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMID 80
           R G  L A  L + +   ++++ T ++  YA  G V+ AR LFD+M  + +V  WNV+I 
Sbjct: 80  RPGRQLHARLLVSGLGLDAVLA-TRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIR 138

Query: 81  GYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            YA+ G    A+ L+R MLA   +EP+  T   VL AC  +  L +GR +H  +  + + 
Sbjct: 139 AYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRT-SW 197

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
             +V V   LI+MY+KCG + +A  VFD    +D VVWNSMI     +G   +AL L   
Sbjct: 198 AADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRN 257

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRA 258
           M    + P+ +T +  +SA A AG +  GR       +  +  + K++    ++++ +++
Sbjct: 258 MAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLK--TSLLDMYAKS 315

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           G V  A +++ D     + + W  ++    +HG+
Sbjct: 316 GWVTVA-RVLFDQLFHRELISWNAMICGFGMHGH 348


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/440 (43%), Positives = 278/440 (63%), Gaps = 5/440 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             ++  Y  +G +  A  LFD+M  +D+V W+ +I    ++ L  EAL +F++M     +
Sbjct: 116 NALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHRD 175

Query: 105 P----NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
                +    ++V+SA   +G +E G W+HS+I     I + V +GTALINMYS+CG + 
Sbjct: 176 IRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRM-GIVMTVPLGTALINMYSRCGLID 234

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +  VFD + +++VV W ++I G A+HG  ++AL++F EM    LKP    FIG+L AC+
Sbjct: 235 RSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVLVACS 294

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GLV +G R F +M+DE+ I+P +EHYGCMV+LL RAG + EA+  V +M ++P+SV+W
Sbjct: 295 HGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPNSVIW 354

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            TLLGAC  H ++ L EK  E +I  +  + G YVLLSN Y  +GNW G A +R  MK+ 
Sbjct: 355 RTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNSMKQN 414

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
            + KEPG S + +   VHEF++GD  HP+ +EI   L  I   +K  GY P T  VLHDI
Sbjct: 415 RIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTSSVLHDI 474

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +++K++ L  HSEKLAVAF L+  +   +I+++KNLR+C DCH   K  S    R I++
Sbjct: 475 QDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKHASGIFDRDIII 534

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RDRNRFHHF  G CSC D+W
Sbjct: 535 RDRNRFHHFSKGLCSCQDFW 554


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 289/450 (64%), Gaps = 2/450 (0%)

Query: 15  SLVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           +L+D+YA+ GD+  A+ +F  + + +       ++  Y K G V  AR LFD M  +DV+
Sbjct: 275 TLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVI 334

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            +N MI GY   G   +AL LF ++    +  +  T V++L+AC  +GAL  GR +H+ I
Sbjct: 335 TFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASI 394

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
           E  R ++ +V + TAL++MY KCG + +A  VF R+ ++DV  W++MI G A +G G DA
Sbjct: 395 EQ-RIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDA 453

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
           L+ F +M R   +P+ +T+I +L+AC+H+ L+NEGR+ FN M+  + + P++EHYGCM++
Sbjct: 454 LESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMID 513

Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
           LL+R+G ++EA  LV  M ++P++V+W ++L ACR+H NI L    AE+L+         
Sbjct: 514 LLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAV 573

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
           YV L NIY     W    R+R LM+E+GV+K  G SSI ++ +VH+F+  D  HP + EI
Sbjct: 574 YVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEI 633

Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKI 433
             M+EEI   LK+ GY P T  +  D+ E++K+ +L  HSEK+A+AFGLIS  P   I I
Sbjct: 634 ITMMEEIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHI 693

Query: 434 VKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           +KNLRVC DCH+  KLIS+   R+I++RDR
Sbjct: 694 MKNLRVCEDCHSAIKLISQLWNREIIVRDR 723



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 35/312 (11%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V+  L+ +YA  G    A + F  +P +  V   T++    + G +  AR L     E++
Sbjct: 140 VANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERN 199

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
           VV W  +I GY++ G   +A+  F  ML++ VEP+EV  +  LSAC ++  LE GR +H 
Sbjct: 200 VVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHL 259

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-------------------- 171
            +   R I++  ++   LI+MY+KCG +  A+ VFD V                      
Sbjct: 260 LVGKKR-IQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHV 318

Query: 172 ------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
                       +DV+ +NSMI GY   G  +DALQLF ++ R  ++  + T + LL+AC
Sbjct: 319 DIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTAC 378

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A  G + +GR    ++ ++  +E  V     +V++  + G+V+EA  +   M  E D   
Sbjct: 379 ASLGALPQGRALHASI-EQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMG-ERDVHT 436

Query: 280 WGTLLGACRLHG 291
           W  ++     +G
Sbjct: 437 WSAMIAGLAFNG 448


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/463 (42%), Positives = 286/463 (61%), Gaps = 8/463 (1%)

Query: 24  GDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           GDV +A  +     ++SL+       ++L  + K G    AR++FD M E+DV+ WN M+
Sbjct: 73  GDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSML 132

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GY Q+G A EAL+LF  M     +P  VTA+ ++SAC  +G    GR  H +I +SR +
Sbjct: 133 SGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSR-M 191

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           +++  +  AL++MY+KCG L+ A  +F+ +   +++   WN +I GY MHG GK+AL+LF
Sbjct: 192 EIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELF 251

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
           + M    ++P+  TF  +LSAC+HAGL++EGR+ F  MK   ++  + +H+ C+V++L R
Sbjct: 252 SRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMK-RLSVTLEDKHHACVVDMLGR 310

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317
           AG ++EA+ L+ +M   P   +WG LL AC++HGN+ LG+  A  L+     ++G YVL+
Sbjct: 311 AGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLM 370

Query: 318 SNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMML 377
           SNIYAA   W  V ++R  MK KG++K    S IE    +  F   D  +P   E+Y  +
Sbjct: 371 SNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKM 430

Query: 378 EEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNL 437
           E +   +K  GYVP     LHD+ E+ K+  L  HSEKLAVAFG++   PG  I++ KNL
Sbjct: 431 ESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNL 490

Query: 438 RVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           RVC DCH+ FK IS    RKI++RD NRFHHF  GTCSC DYW
Sbjct: 491 RVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 141/244 (57%), Gaps = 4/244 (1%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEPNEVT 109
           YAK G     R +FD+M  KD+VCW  MI  Y Q     EAL+LF++M  E+ +  + + 
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIA 61

Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
            V+V SA GQ+G +++   +H Y      I+  + VG +++ M++KCG+ + ARLVFD +
Sbjct: 62  VVSVASAVGQLGDVKNAHTVHGYAFRKSLIE-ELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
            ++DV+ WNSM+ GY  +G   +AL LF+EM     +P+ +T + ++SACA+ G  + GR
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACR 288
           +F + + D   +E        ++++ ++ G +E+A  L   +   E ++  W  L+    
Sbjct: 181 KFHDFIVDS-RMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239

Query: 289 LHGN 292
           +HG+
Sbjct: 240 MHGH 243



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDI 210
           MY+KCG   D R +FD ++ KD+V W +MI  Y      ++AL LF +M +   L    I
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 211 TFIGLLSACAHAGLVN-----EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
             + + SA    G V       G  F  ++ +E  +   +      + + ++ G  E+A 
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSI------LAMHTKCGNTEKA- 113

Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +LV DM +E D + W ++L     +G 
Sbjct: 114 RLVFDMMMERDVISWNSMLSGYTQNGQ 140


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 273/437 (62%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T ++  Y+K      A  +F  +++KDVV W+ M+  YAQ G  N A   F +M    ++
Sbjct: 395 TALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLK 454

Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           PNE T  + + AC    A ++ GR  H+ I         + V +AL++MY++ GS+++A+
Sbjct: 455 PNEFTISSAIDACASPAAGVDLGRQFHA-ISIKHRCHDALCVSSALVSMYARKGSIENAQ 513

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF+R  D+D++ WNSM+ GYA HG+ + AL +F +M    +    +TF+ ++  CAHAG
Sbjct: 514 CVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAG 573

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EG+++F+ M  +Y I P ++HY CMV+L SRAG+++E   L+  M       +W  L
Sbjct: 574 LVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRAL 633

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H N+ LG+  AE L+S    +S TYVLLSNIY+A G W     VR LM  K V+
Sbjct: 634 LGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVR 693

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KE GCS I++ NKVH F+A D  HP S++IY  L  +   LK EGY P T  V HD+ E 
Sbjct: 694 KEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAED 753

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L +HSE+LA+AFGLI+T P   + I KNLRV  D H V K++S+   R+I+MRD 
Sbjct: 754 QKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDC 813

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHHF +G CSCGD+W
Sbjct: 814 CRFHHFKSGVCSCGDFW 830



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 151/288 (52%), Gaps = 19/288 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y     V   R +F+ M +++VV W  ++ GY Q G+  + + LF RM AE V 
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW 154

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLK 160
           PN  T  +VLS     G ++ G+ +H+     ++IK      V V  +L+NMY+KCG ++
Sbjct: 155 PNPFTFSSVLSMVASQGMVDLGQHVHA-----QSIKFGCCSTVFVCNSLMNMYAKCGLVE 209

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           +AR+VF R+  +D+V WN+++ G  ++G   +ALQLF++        ++ T+  +++ CA
Sbjct: 210 EARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCA 269

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYG----CMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +   +   R+  +++     ++     YG     +++  ++AGQ+++A  + + M    +
Sbjct: 270 NLKHLGLARQLHSSV-----LKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQN 324

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAA 323
            V W  ++  C  +G+I L   +   +    +A N  TY  +  +  A
Sbjct: 325 VVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEA 372



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 9/250 (3%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +T ++  Y K G++  A  +F  M   ++VV W  MIDG  Q+G    A  LF RM  + 
Sbjct: 296 MTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDG 355

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN++T   +L+    +        IH+ +  + N +    VGTAL+  YSK  S ++A
Sbjct: 356 VAPNDLTYSTILT----VSEASFPPQIHAQVIKT-NYECTPTVGTALMVSYSKLCSTEEA 410

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH- 221
             +F  ++ KDVV W++M+  YA  G    A   F +M    LKP++ T    + ACA  
Sbjct: 411 LSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASP 470

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           A  V+ GR+ F+ +  ++     +     +V++ +R G +E A + V + + + D + W 
Sbjct: 471 AAGVDLGRQ-FHAISIKHRCHDALCVSSALVSMYARKGSIENA-QCVFERQTDRDLLSWN 528

Query: 282 TLLGACRLHG 291
           ++L     HG
Sbjct: 529 SMLSGYAQHG 538



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 2/181 (1%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           + ++  CG +     G+ +H+      +   +++VGT+L++MY    S+ D R VF+ + 
Sbjct: 59  LGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGML 118

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            ++VV W S++ GY   G   D + LF  M    + P+  TF  +LS  A  G+V+ G+ 
Sbjct: 119 KRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQH 178

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
             +    ++     V     ++N+ ++ G VEEA  +   M+   D V W TL+    L+
Sbjct: 179 -VHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAGLVLN 236

Query: 291 G 291
           G
Sbjct: 237 G 237



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K      L VS++LV +YAR G + +A+ +F     R L+S  +ML+ Y         
Sbjct: 484 SIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGY--------- 534

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                 AQHG + +AL +FR+M  E ++ + +T ++V+  C   
Sbjct: 535 ----------------------AQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHA 572

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           G +E G+     +     I   +     ++++YS+ G L +
Sbjct: 573 GLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDE 613


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 301/521 (57%), Gaps = 52/521 (9%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLT-------------------- 49
           LY++T LV +YAR G +  A  +   MP+R++VS T M++                    
Sbjct: 70  LYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLR 129

Query: 50  ------------------------------CYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
                                          YAK   +  AR +FD +  +DVV +  ++
Sbjct: 130 AGIHQVKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAIL 189

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            GY Q GL  EAL LFR +  E ++ N+VT  A+L+A   + +++ G+ +H  I   R +
Sbjct: 190 SGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILR-REL 248

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
              + +  +LI+MYSKCG L  +R VFD + ++ VV WN+M++GY  HG   + +QLF  
Sbjct: 249 PFFMALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRS 308

Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
           MC   +KP  +T + +LS  +H GLV+EG   F+ +  E +     EHYGC+++LL R+G
Sbjct: 309 MCD-EVKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSG 367

Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
           Q+++A  L+  M  +P   +WG+LLGACR+H N+ +GE +A+ L+     N+G YV+LSN
Sbjct: 368 QLQKALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSN 427

Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
           IYAA G W  V RVR LM +K V KEPG S + L   +H F + +  HP+ ++I   ++E
Sbjct: 428 IYAAAGMWKDVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKE 487

Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
           I   +KA G+VP    VLHD+ ++QK+  L  HSEKLA+ FGL+ST    +I+++KNLR+
Sbjct: 488 IYVAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRI 547

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCH   K +SK  GR+I +RD+NRFH    G C+CGDYW
Sbjct: 548 CVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 588



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 133/263 (50%), Gaps = 27/263 (10%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           ++ A   + +L   T ++  YA+ G +  AR + D M E++VV W  MI GY+Q+   ++
Sbjct: 60  RMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQNERPDQ 119

Query: 91  ALVLFRRMLAEKV-EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
           A  LF  ML   + +  +V A AV +                      N ++++ VG++L
Sbjct: 120 AWELFIMMLRAGIHQVKQVHAFAVKT----------------------NFELHMFVGSSL 157

Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
           ++MY+K  ++++AR VFD +  +DVV + +++ GY   G  ++AL LF  +    ++ + 
Sbjct: 158 LDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQ 217

Query: 210 ITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
           +TF  LL+A +    ++ G++     ++ E      +++   ++++ S+ G++  + + V
Sbjct: 218 VTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQN--SLIDMYSKCGKLLYSRR-V 274

Query: 269 MDMKIEPDSVLWGTLLGACRLHG 291
            D   E   V W  +L     HG
Sbjct: 275 FDSMPERSVVSWNAMLMGYGRHG 297


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/465 (40%), Positives = 295/465 (63%), Gaps = 1/465 (0%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           L++ Y R  D+  A  LF +MP+R+  S +T++  Y   GE+  A+ LF+ M EK+VV W
Sbjct: 202 LINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSW 261

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
             +I+G++Q G    A+  +  ML + ++PNE T  AVLSAC + GAL SG  IH YI +
Sbjct: 262 TTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILD 321

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           +  IK++  +GTAL++MY+KCG L  A  VF  +N KD++ W +MI G+A+HG    A+Q
Sbjct: 322 N-GIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQ 380

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            F +M     KP ++ F+ +L+AC ++  V+ G  FF++M+ +YAIEP ++HY  +V+LL
Sbjct: 381 CFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLL 440

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            RAG++ EA++LV +M I PD   W  L  AC+ H      E +++ L+  +    G+Y+
Sbjct: 441 GRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYI 500

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYM 375
            L   +A+ GN   V + R  ++++  ++  G S IEL  ++++F AGD  H  ++EI +
Sbjct: 501 FLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGL 560

Query: 376 MLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVK 435
            L+EI      +GY P     +HDI E++K+N   +HSEKLA+  G + T PGT+I+I+K
Sbjct: 561 KLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIK 620

Query: 436 NLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           NLR+C DCH++ K +SK + R I++RD  +FHHF +G CSCGDYW
Sbjct: 621 NLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 146/329 (44%), Gaps = 21/329 (6%)

Query: 25  DVLSAEKLFATMPQRSLVS---LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           D  S   + A + +R ++S      +++C +       +  +F + EE++    N +I G
Sbjct: 41  DTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALIRG 100

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
             ++     ++  F  ML   V+P+ +T   VL +  ++G    GR +H+    +  +  
Sbjct: 101 LTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKN-FVDC 159

Query: 142 NVQVGTALINMYSKCGSLKDARLVF----DRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
           +  V  +L++MY+K G LK A  VF    DR+  + +++WN +I GY        A  LF
Sbjct: 160 DSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLF 219

Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
             M     + +  ++  L+     +G +N  ++ F  M      E  V  +  ++N  S+
Sbjct: 220 RSMP----ERNSGSWSTLIKGYVDSGELNRAKQLFELMP-----EKNVVSWTTLINGFSQ 270

Query: 258 AGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGT 313
            G  E A   Y  +++  ++P+      +L AC   G +  G +I  Y++   +  +   
Sbjct: 271 TGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAI 330

Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
              L ++YA  G  D  A V + M  K +
Sbjct: 331 GTALVDMYAKCGELDCAATVFSNMNHKDI 359



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 39/201 (19%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  + T+LVD+YA+ G++  A  +F+ M  + ++S                         
Sbjct: 327 DRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS------------------------- 361

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 W  MI G+A HG  ++A+  FR+M+    +P+EV  +AVL+AC     ++ G  
Sbjct: 362 ------WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLN 415

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
               +     I+  ++    ++++  + G L +A  LV +   + D+  W ++      H
Sbjct: 416 FFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAH 475

Query: 188 -------GFGKDALQLFNEMC 201
                     ++ L+L  E+C
Sbjct: 476 KGYRRAESVSQNLLELDPELC 496


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 274/434 (63%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   ++ A  +F++    D++    MI   +Q      A+ LF  ML + +EP+
Sbjct: 445 LIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 504

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                ++L+AC  + A E G+ +H+++   R    +   G AL+  Y+KCGS++DA L F
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIK-RQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + ++ VV W++MI G A HG GK AL+LF  M    + P+ IT   +L AC HAGLV+
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E +R+FN+MK+ + I+   EHY CM++LL RAG++++A +LV  M  + ++ +WG LLGA
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGA 683

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            R+H +  LG+  AE L       SGT+VLL+N YA+ G W+ VA+VR LMK+  ++KEP
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEP 743

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
             S +E+ +KVH F+ GD  HP +KEIY  L+E+   +   GY+P   + LHD+   +K+
Sbjct: 744 AMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKE 803

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LAVAF L+ST PG  I++ KNLR+C DCH  FK IS    R+I++RD NRF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRF 863

Query: 467 HHFVNGTCSCGDYW 480
           HHF +GTCSCGDYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 154/339 (45%), Gaps = 35/339 (10%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           ++ + +   ++  Y K G V  A V+F+ M + DVV WN +I G   +G  + A+ L  +
Sbjct: 234 EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M +  + PN     ++L AC   GA + GR IH ++  + N   +  +G  L++MY+K  
Sbjct: 294 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA-NADSDDYIGVGLVDMYAKNH 352

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            L DA  VFD ++ +D+++WN++I G +  G   +A  +F  + +  L  +  T   +L 
Sbjct: 353 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 412

Query: 218 ACAHAGLVNEGRRF------FNTMKDEYAIEPKVEHY---GC------------------ 250
           + A     +  R+          + D + +   ++ Y    C                  
Sbjct: 413 STASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 472

Query: 251 ---MVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
              M+  LS+    E A KL M+M    +EPD  +  +LL AC        G+++  +LI
Sbjct: 473 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 305 S-QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             Q ++++     L   YA  G+ +      + + E+GV
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
             ++  Y   G +  AR +FD+   E++ V WN ++  Y ++    +A+ +F  M+   +
Sbjct: 139 NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 198

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P E     V++AC     +++GR +H+ +      + +V    AL++MY K G +  A 
Sbjct: 199 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR-MGYEKDVFTANALVDMYVKMGRVDIAS 257

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++F+++ D DVV WN++I G  ++G    A++L  +M    L P+      +L ACA AG
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAG 317

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             + GR+    M    A        G +V++ ++   +++A K V D     D +LW  L
Sbjct: 318 AFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDAMK-VFDWMSHRDLILWNAL 375

Query: 284 LGACRLHG 291
           +  C  HG
Sbjct: 376 ISGCS-HG 382



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           YAK   +  A  +FD M  +D++ WN +I G +  G  +EA  +F  +  E +  N  T 
Sbjct: 348 YAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 407

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
            AVL +   + A  + R +H+  E    I  +  V   LI+ Y KC  L DA  VF+  +
Sbjct: 408 AAVLKSTASLEAASATRQVHALAEKIGFI-FDAHVVNGLIDSYWKCSCLSDAIRVFEECS 466

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             D++   SMI   +    G+ A++LF EM R  L+P       LL+ACA      +G++
Sbjct: 467 SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 231 FF------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                     M D +A    V  Y       ++ G +E+A +L      E   V W  ++
Sbjct: 527 VHAHLIKRQFMSDAFAGNALVYTY-------AKCGSIEDA-ELAFSSLPERGVVSWSAMI 578

Query: 285 GACRLHGN 292
           G    HG+
Sbjct: 579 GGLAQHGH 586



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 9/276 (3%)

Query: 20  YARGGDVLSAEKLFATMPQRS-LVSLTT-MLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
           YA    +L    L A + +   L SL   +++ Y+K      AR +FD++ +   V W+ 
Sbjct: 14  YAAAQALLPGAHLHANLLKSGFLASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 78  MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR 137
           ++  Y+ +GL   A+  F  M AE V  NE  A+ V+  C  +   + G  +H+ +  + 
Sbjct: 74  LVTAYSNNGLPRSAIQAFHGMRAEGVCCNEF-ALPVVLKC--VPDAQLGAQVHA-MAMAT 129

Query: 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQL 196
               +V V  AL+ MY   G + DAR VFD   ++++ V WN ++  Y  +    DA+Q+
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F EM    ++P++  F  +++AC  +  ++ GR+  + M      E  V     +V++  
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYV 248

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           + G+V+ A  ++ +   + D V W  L+  C L+G+
Sbjct: 249 KMGRVDIA-SVIFEKMPDSDVVSWNALISGCVLNGH 283



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 37/239 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D +   +LV  YA+ G +  AE  F+++P+R +VS                  
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS------------------ 573

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ MI G AQHG    AL LF RM+ E + PN +T  +VL AC   G
Sbjct: 574 -------------WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 620

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++  +   + ++    I    +  + +I++  + G L DA  LV       +  VW ++
Sbjct: 621 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGAL 680

Query: 181 IVGYAMHGFGKDAL--QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           +    +H   KD    +L  E   I       T + L +  A +G+ NE  +    MKD
Sbjct: 681 LGASRVH---KDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKD 736


>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
 gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
          Length = 568

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/439 (44%), Positives = 290/439 (66%), Gaps = 8/439 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVL 63
            D +    L+   AR   +   E++ A   +  L +L     +++  Y   G   +A  +
Sbjct: 116 PDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRV 175

Query: 64  FDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           FD++   E+++V WN M++G+A +G  NE L +FR ML     P+  T V+VL+A  +IG
Sbjct: 176 FDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIG 235

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV-WNSM 180
           AL  GR +H Y+     ++ N  VG ALI++Y+KCG ++DAR VF+ +  +  VV W S+
Sbjct: 236 ALALGRRVHVYLTKVGLVE-NSHVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSL 294

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           IVG A++GFGK+AL+LF  M R +L P++IT +G+L AC+H GLV++G  +FN MK+EY 
Sbjct: 295 IVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYN 354

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P++EH GCMV+LL RAG+V+EAY  ++ M +EP++V+W TLLGAC +H  + LGE   
Sbjct: 355 IAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAW 414

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
             L+  +  +SG YVLLSN+YAA+G W  V  +R  M + GV+K PG S +EL N V+EF
Sbjct: 415 ARLVELDPGHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVELRNSVYEF 474

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           + GD  HP+S++IY ML E+   L+ EGY+P+T  VL DI E++K+ +L  HSE+LA+AF
Sbjct: 475 VMGDRSHPESEQIYQMLAEVADSLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAF 534

Query: 421 GLISTQPGTSIKIVKNLRV 439
            L+ + PGT I+IVKNLR+
Sbjct: 535 ALLKSLPGTPIRIVKNLRL 553



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118
           A  VL   + + D    N ++   A     + AL L  R LA    P+  T   +L AC 
Sbjct: 73  AVAVLTRVLPDPDPFSLNTVLRIAASSSRPSLALALHARRLAP---PDTHTYPPLLQACA 129

Query: 119 QIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDR--VNDKDVV 175
           ++ +L  G  IH+  E ++N +   V V  +L+++Y  CG  + A  VFD   V ++++V
Sbjct: 130 RLLSLRHGERIHA--EAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLV 187

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            WNSM+ G+A +G   + L +F EM  +   P   T + +L+A A  G +  GRR    +
Sbjct: 188 SWNSMLNGFAANGRPNEVLTIFREMLDVNFMPDGFTVVSVLTASAEIGALALGRRVHVYL 247

Query: 236 KDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
                +E    H G  +++L ++ G VE+A ++  +M      V W +L+    ++G
Sbjct: 248 TKVGLVENS--HVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNG 302



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 31/186 (16%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K  L ++ +V  +L+DLYA+ G V  A ++F  M  R                       
Sbjct: 249 KVGLVENSHVGNALIDLYAKCGGVEDARRVFEEMGAR----------------------- 285

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                  + VV W  +I G A +G   EAL LF  M  EK+ P E+T V VL AC   G 
Sbjct: 286 -------RTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVLYACSHCGL 338

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           ++ G    + ++   NI   ++    ++++  + G +K+A   +     + + VVW +++
Sbjct: 339 VDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLEPNAVVWRTLL 398

Query: 182 VGYAMH 187
              AMH
Sbjct: 399 GACAMH 404


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/480 (39%), Positives = 289/480 (60%), Gaps = 32/480 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K   + DL+V  +L+D YA+  D+ S+ K+F+++                        
Sbjct: 371 AIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL------------------------ 406

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                   + + V WN ++ G++Q GL  EAL +F  M A ++   +VT  +VL AC   
Sbjct: 407 -------RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAST 459

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            ++     IH  IE S     +  +G +LI+ Y+KCG ++DA  VF  + ++D++ WN++
Sbjct: 460 ASIRHAGQIHCSIEKS-TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAI 518

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GYA+HG   DAL+LF+ M +  ++ +DITF+ LLS C   GLVN G   F++M+ ++ 
Sbjct: 519 ISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHG 578

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I+P +EHY C+V LL RAG++ +A + + D+   P +++W  LL +C +H N+ALG   A
Sbjct: 579 IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSA 638

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           E ++     +  TYVLLSN+YAA G+ D VA +R  M+  GV+K PG S +E+  ++H F
Sbjct: 639 EKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAF 698

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
             G + HP  + I  MLE +N     EGY+P   +VLHD+ ++QK   L VHSE+LA+A+
Sbjct: 699 SVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAY 758

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GL+ T PG  I+I+KNLR C DCH  F +ISK   R+I++RD NRFHHF +G CSCGDYW
Sbjct: 759 GLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 152/286 (53%), Gaps = 14/286 (4%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            +L  YAK G++  AR+ F+ +   DV+  + MI  YAQ     +A  LF R++   V P
Sbjct: 284 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 343

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKD 161
           NE +  +VL AC  +  L+ G+ IH++      IK+    ++ VG AL++ Y+KC  +  
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHA-----IKIGHESDLFVGNALMDFYAKCNDMDS 398

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
           +  +F  + D + V WN+++VG++  G G++AL +F EM   ++  + +T+  +L ACA 
Sbjct: 399 SLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 458

Query: 222 -AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
            A + + G+   +  K  +  +  + +   +++  ++ G + +A K+   + +E D + W
Sbjct: 459 TASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALKVFQHL-MERDIISW 515

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIG 325
             ++    LHG  A   ++ + +   N+ +N  T+V L ++  + G
Sbjct: 516 NAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTG 561



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 151/337 (44%), Gaps = 74/337 (21%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM- 67
           DL+ +  L+++Y + G + SA +LF  MP+R++VS  T++  +A++G+  AA  LF  + 
Sbjct: 95  DLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLR 154

Query: 68  -EEKDV--------------------------VCWNV-----------MIDGYAQHGLAN 89
            E  +V                            W +           +ID Y+   L +
Sbjct: 155 WEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVS 214

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSA------------CGQ---IGALESGRW-IHSYI 133
           +A  +F  +    V  + V   A++S             C Q   + A+   R  IH   
Sbjct: 215 DAEHVFNGI----VRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCA 270

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
             + N      VG AL++MY+KCG +KDARL F+ +   DV++ + MI  YA     + A
Sbjct: 271 IKTLN-DTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 329

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG---- 249
            +LF  + R  + P++ +   +L AC +   ++ G++  N     +AI  K+ H      
Sbjct: 330 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHN-----HAI--KIGHESDLFV 382

Query: 250 --CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              +++  ++   ++ + K+   ++ + + V W T++
Sbjct: 383 GNALMDFYAKCNDMDSSLKIFSSLR-DANEVSWNTIV 418



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 37/289 (12%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L     +L  Y K G +A+AR LFD M E+++V +  ++  +AQ G    A  LFRR+  
Sbjct: 96  LFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRW 155

Query: 101 EKVEPNEVTAVAVL------SACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154
           E  E N+     +L       A G  G + S  W   +  N+        VG+ LI+ YS
Sbjct: 156 EGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF-------VGSGLIDAYS 208

Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-------------- 200
            C  + DA  VF+ +  KD VVW +M+  Y+ +   ++A +                   
Sbjct: 209 LCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHG 268

Query: 201 CRIRLKPSDITFIG--LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           C I+        +G  LL   A  G + + R  F  +  +  I         M++  +++
Sbjct: 269 CAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSF-----MISRYAQS 323

Query: 259 GQVEEAYKL---VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
            Q E+A++L   +M   + P+     ++L AC     +  G++I  + I
Sbjct: 324 NQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAI 372



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 114 LSACGQIGALESGRWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           L  C   G    GR +H ++     + ++++     L+NMY K G L  AR +FDR+ ++
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEM 200
           ++V + +++  +A  G  + A  LF  +
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRL 153


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/479 (43%), Positives = 293/479 (61%), Gaps = 4/479 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +L   L    SL DL  R G  L  +++ A   Q  +V  T ++  Y K G + AA  
Sbjct: 177 KVTLVSGLDACASLGDL--RSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAE 233

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F  + EK+VV W+ +   YA++    +A+ +  RM  E + PN  T V+VL AC  I A
Sbjct: 234 AFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAA 293

Query: 123 LESGRWIHSYIEN-SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L+ GR IH  I      ++ +V V TAL+NMYSKCG+L  A  +FD++   D+V+WNS+I
Sbjct: 294 LKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLI 353

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              A HG  + AL+LF  M    L+P+ ITF  +L AC+HAG++++GR+ F +   ++ I
Sbjct: 354 ATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGI 413

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P+ EH+GCMV+LL RAG + ++  L++ M  EP  V W   LGACR + N+      AE
Sbjct: 414 FPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAE 473

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L   +      YVLLSN+YA  G W  VAR+R  M+     KE G S IE+ ++VHEF+
Sbjct: 474 NLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFI 533

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +GDL HP+  EI+  L+ +   +KA GYVP T++VLHD+ ++ K+  +  HSEKLA+AF 
Sbjct: 534 SGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFA 593

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T  G+ I++VKNLRVC DCH   K ISK   R+I++RD NRFH F NG CSCGDYW
Sbjct: 594 LLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 136/249 (54%), Gaps = 3/249 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ Y K G    A  +F  M  +DVV W+ M+  YA++G   EAL LFR+M  + V 
Sbjct: 115 TALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVA 174

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN+VT V+ L AC  +G L SG  +H  +E ++ I+  V VGTAL+N+Y KCG ++ A  
Sbjct: 175 PNKVTLVSGLDACASLGDLRSGALMHQRVE-AQGIQSGVVVGTALVNLYGKCGRIEAAAE 233

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F ++ +K+VV W+++   YA +   +DA+++ + M    L P+  TF+ +L ACA    
Sbjct: 234 AFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAA 293

Query: 225 VNEGRRFFNTMKD-EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +GRR    +      +E  V     +VN+ S+ G +  A  +  D     D VLW +L
Sbjct: 294 LKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNM-FDKIAHLDLVLWNSL 352

Query: 284 LGACRLHGN 292
           +     HG 
Sbjct: 353 IATNAQHGQ 361



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 4/280 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K      A  +F  ++ K+V  W +M+  +A++   +   + FR ML + + P 
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPG 75

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EV     LSAC     +  GR I   I  +  I+    V TAL+++Y K G   DA  VF
Sbjct: 76  EVGISIFLSACTDAREITIGRSIQLAILGT-GIEEESIVQTALVSLYGKLGHCTDAASVF 134

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            R++ +DVV W++M+  YA +G  ++AL LF +M    + P+ +T +  L ACA  G + 
Sbjct: 135 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 194

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G      ++ +  I+  V     +VNL  + G++E A +    + +E + V W  +  A
Sbjct: 195 SGALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNVVAWSAISAA 252

Query: 287 CRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAIG 325
              +       ++   +  + LA NS T+V + +  AAI 
Sbjct: 253 YARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIA 292


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 273/436 (62%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y K   + +A  +F  M  K+VV W  M+ GY Q+G + EA+ +F  M    +E
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T  +V+S+C  + +LE G   H     S  I   + V  AL+ +Y KCGS++D+  
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF-ITVSNALVTLYGKCGSIEDSHR 431

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  ++  D V W +++ GYA  G   + L+LF  M     KP  +TFIG+LSAC+ AGL
Sbjct: 432 LFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGL 491

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +G + F +M  E+ I P  +HY CM++L SRAG++EEA K +  M   PD++ W +LL
Sbjct: 492 VQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +CR H N+ +G+  AE L+     N+ +Y+LLS+IYAA G W+ VA +R  M++KG++K
Sbjct: 552 SSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRK 611

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS I+  N+VH F A D  +P S +IY  LE++N  +  EGYVP    VLHD+ + +
Sbjct: 612 EPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSE 671

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSEKLA+AFGLI   PG  I++VKNLRVC DCH   K ISK T R+I++RD  
Sbjct: 672 KIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAA 731

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +G CSCGD+W
Sbjct: 732 RFHLFKDGRCSCGDFW 747



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 169/285 (59%), Gaps = 3/285 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VKF     ++V + LVD+Y++ G V  A + F  MP++++V   T++    +   +  +R
Sbjct: 169 VKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSR 228

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF DM+EKD + W  MI G+ Q+GL  EA+ LFR M  E +E ++ T  +VL+ACG + 
Sbjct: 229 QLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVM 288

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL+ G+ +H+YI  + + + N+ VG+AL++MY KC S+K A  VF ++N K+VV W +M+
Sbjct: 289 ALQEGKQVHAYIIRT-DYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAML 347

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGY  +G+ ++A+++F +M    ++P D T   ++S+CA+   + EG + F+       +
Sbjct: 348 VGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGL 406

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
              +     +V L  + G +E++++L  +M    D V W  L+  
Sbjct: 407 ISFITVSNALVTLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSG 450



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 174/405 (42%), Gaps = 73/405 (18%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   + ++++  +LV  YA+   +  A ++F  MPQR+L S  T+L+ Y+K   +    
Sbjct: 36  IKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEME 95

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
            +F  M  +D+V WN +I  YA  G   +++  +  ML       N +    +L    + 
Sbjct: 96  RVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQ 155

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSK------------------------- 155
           G +  G  +H ++      +  V VG+ L++MYSK                         
Sbjct: 156 GCVHLGLQVHGHVVKF-GFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTL 214

Query: 156 ------CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
                 C  ++D+R +F  + +KD + W +MI G+  +G  ++A+ LF EM    L+   
Sbjct: 215 IAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQ 274

Query: 210 ITFIGLLSACAHAGLVNEGRRFF---------------NTMKDEY-------AIEPKVEH 247
            TF  +L+AC     + EG++                 + + D Y       + E     
Sbjct: 275 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRK 334

Query: 248 YGC--------MVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALG 296
             C        M+    + G  EEA K+  DM+   IEPD    G+++ +C    N+A  
Sbjct: 335 MNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSC---ANLASL 391

Query: 297 EKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLM 337
           E+ A++     ++   +++ +SN    +Y   G+ +   R+ + M
Sbjct: 392 EEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEM 436



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 34/178 (19%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           VS +LV LY + G +  + +LF+ M     VS T +++ Y                    
Sbjct: 412 VSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGY-------------------- 451

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI-H 130
                      AQ G ANE L LF  MLA   +P++VT + VLSAC + G ++ G  I  
Sbjct: 452 -----------AQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFE 500

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           S I+  R I +     T +I+++S+ G L++AR   +++    D + W S++     H
Sbjct: 501 SMIKEHRIIPIEDHY-TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFH 557


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/440 (42%), Positives = 272/440 (61%), Gaps = 6/440 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK- 102
            ++  YA+ G+   AR +F  ++  DVV WN +I G    G   +A  L R M  L E  
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 475

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN +T + +L  C  + A   G+ IH Y      +  +V VG+AL++MY+KCG L  +
Sbjct: 476 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALS 534

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAH 221
           R VFDR+  ++ + WN +I+ Y MHG G +A  LF+ M      +P+++TF+  L+AC+H
Sbjct: 535 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 594

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LW 280
           +G+V+ G + F+ M+ ++ +EP  +   C+V++L RAG+++EAY +V  M+     V  W
Sbjct: 595 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAW 654

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            T+LGACRLH N+ LGE   E L+      +  YVLL NIY+A G W   A VR+ M+ +
Sbjct: 655 STMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRR 714

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV KEPGCS IE+   +H F+AG+  HP S+E++  +E + G + A GY P T  VLHD+
Sbjct: 715 GVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDM 774

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +  K   L  HSEKLA+AFGL+   PG +I++ KNLRVC DCH   K +SK  GR+I++
Sbjct: 775 DDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVL 834

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF NG CSCGDYW
Sbjct: 835 RDVRRFHHFRNGQCSCGDYW 854



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 138/290 (47%), Gaps = 39/290 (13%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +   +L+ YA+ G VA A+ LF        DVV WN M+    Q G+ +EA+     M+A
Sbjct: 205 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 264

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+ VT  + L AC ++  L+ GR +H+Y+     +  N  V +AL++MY+    + 
Sbjct: 265 LGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVG 324

Query: 161 DARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLS 217
            AR VFD V D  K + +WN+MI GYA  G  ++AL+LF  M       P + T   +L 
Sbjct: 325 KARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLP 384

Query: 218 ACA-----------HAGLVNE---GRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
           ACA           H  +V     G RF  N + D YA                R G+ +
Sbjct: 385 ACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYA----------------RLGKTD 428

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            A ++   + + PD V W TL+  C + G++A   ++A  +  Q L   G
Sbjct: 429 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREM--QQLEEGG 475



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 34/190 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+ +LD D+ V ++LVD+YA                               K G +A +
Sbjct: 506 AVRHALDTDVAVGSALVDMYA-------------------------------KCGCLALS 534

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQ 119
           R +FD +  ++ + WNV+I  Y  HGL  EA VLF RM A  +  PNEVT +A L+AC  
Sbjct: 535 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 594

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVW 177
            G ++ G  +   +E    ++    +   ++++  + G L +A  +       ++ V  W
Sbjct: 595 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAW 654

Query: 178 NSMIVGYAMH 187
           ++M+    +H
Sbjct: 655 STMLGACRLH 664



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 73/372 (19%)

Query: 25  DVLSAEKLFATMPQRSLVSLTT------MLTCYAKQGEVAAARVLFDDMEEK--DVVCWN 76
           D  SA  + A   +R L+   +      +LT YA+ G +AAA  +F  + +   D V +N
Sbjct: 72  DARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFN 131

Query: 77  VMIDGYAQHGLANEALVLFRR---------MLAEKVEP-NEVTAVAVLSACGQI----GA 122
            +I           AL LFRR          +     P    T V+VL A   +     A
Sbjct: 132 SLI----------SALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAA 181

Query: 123 LESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDARLVFDRVND--KDVVVWNS 179
           +  GR  H++   +  +  + +    AL++MY++ G + DA+ +F        DVV WN+
Sbjct: 182 VRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNT 241

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------- 232
           M+      G   +A+Q   +M  + ++P  +TF   L AC+   L++ GR          
Sbjct: 242 MVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDD 301

Query: 233 ---------NTMKDEYAIEPKVEH-----------------YGCMVNLLSRAGQVEEAYK 266
                    + + D YA   +V                   +  M+   ++AG  EEA +
Sbjct: 302 ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALR 361

Query: 267 LVMDMKIE----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIY 321
           L   M+ E    P      ++L AC      A  E +  Y++ + +A N      L ++Y
Sbjct: 362 LFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 421

Query: 322 AAIGNWDGVARV 333
           A +G  D   R+
Sbjct: 422 ARLGKTDVARRI 433


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 274/434 (63%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K   ++ A  +F++    D++    MI   +Q      A+ LF  ML + +EP+
Sbjct: 352 LIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 411

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                ++L+AC  + A E G+ +H+++   R    +   G AL+  Y+KCGS++DA L F
Sbjct: 412 PFVLSSLLNACASLSAYEQGKQVHAHLIK-RQFMSDAFAGNALVYTYAKCGSIEDAELAF 470

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             + ++ VV W++MI G A HG GK AL+LF  M    + P+ IT   +L AC HAGLV+
Sbjct: 471 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 530

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E +R+FN+MK+ + I+   EHY CM++LL RAG++++A +LV  M  + ++ +WG LLGA
Sbjct: 531 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGA 590

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
            R+H +  LG+  AE L       SGT+VLL+N YA+ G W+ VA+VR LMK+  ++KEP
Sbjct: 591 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEP 650

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
             S +E+ +KVH F+ GD  HP +KEIY  L+E+   +   GY+P   + LHD+   +K+
Sbjct: 651 AMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKE 710

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LAVAF L+ST PG  I++ KNLR+C DCH  FK IS    R+I++RD NRF
Sbjct: 711 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRF 770

Query: 467 HHFVNGTCSCGDYW 480
           HHF +GTCSCGDYW
Sbjct: 771 HHFRDGTCSCGDYW 784



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 154/339 (45%), Gaps = 35/339 (10%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           ++ + +   ++  Y K G V  A V+F+ M + DVV WN +I G   +G  + A+ L  +
Sbjct: 141 EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 200

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M +  + PN     ++L AC   GA + GR IH ++  + N   +  +G  L++MY+K  
Sbjct: 201 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA-NADSDDYIGVGLVDMYAKNH 259

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            L DA  VFD ++ +D+++WN++I G +  G   +A  +F  + +  L  +  T   +L 
Sbjct: 260 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 319

Query: 218 ACAHAGLVNEGRRF------FNTMKDEYAIEPKVEHY---GC------------------ 250
           + A     +  R+          + D + +   ++ Y    C                  
Sbjct: 320 STASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 379

Query: 251 ---MVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
              M+  LS+    E A KL M+M    +EPD  +  +LL AC        G+++  +LI
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 439

Query: 305 S-QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             Q ++++     L   YA  G+ +      + + E+GV
Sbjct: 440 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 478



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 5/248 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDM-EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
             ++  Y   G +  AR +FD+   E++ V WN ++  Y ++    +A+ +F  M+   +
Sbjct: 46  NALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 105

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P E     V++AC     +++GR +H+ +      + +V    AL++MY K G +  A 
Sbjct: 106 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR-MGYEKDVFTANALVDMYVKMGRVDIAS 164

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           ++F+++ D DVV WN++I G  ++G    A++L  +M    L P+      +L ACA AG
Sbjct: 165 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAG 224

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
             + GR+    M    A        G +V++ ++   +++A K V D     D +LW  L
Sbjct: 225 AFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDAMK-VFDWMSHRDLILWNAL 282

Query: 284 LGACRLHG 291
           +  C  HG
Sbjct: 283 ISGCS-HG 289



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 15/252 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK   +  A  +FD M  +D++ WN +I G +  G  +EA  +F  +  E +  N
Sbjct: 251 LVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVN 310

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  AVL +   + A  + R +H+  E    I  +  V   LI+ Y KC  L DA  VF
Sbjct: 311 RTTLAAVLKSTASLEAASATRQVHALAEKIGFI-FDAHVVNGLIDSYWKCSCLSDAIRVF 369

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +  +  D++   SMI   +    G+ A++LF EM R  L+P       LL+ACA      
Sbjct: 370 EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYE 429

Query: 227 EGRRFF------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           +G++          M D +A    V  Y       ++ G +E+A +L      E   V W
Sbjct: 430 QGKQVHAHLIKRQFMSDAFAGNALVYTY-------AKCGSIEDA-ELAFSSLPERGVVSW 481

Query: 281 GTLLGACRLHGN 292
             ++G    HG+
Sbjct: 482 SAMIGGLAQHGH 493



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 37/239 (15%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K     D +   +LV  YA+ G +  AE  F+++P+R +VS                  
Sbjct: 439 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS------------------ 480

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        W+ MI G AQHG    AL LF RM+ E + PN +T  +VL AC   G
Sbjct: 481 -------------WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 527

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++  +   + ++    I    +  + +I++  + G L DA  LV       +  VW ++
Sbjct: 528 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGAL 587

Query: 181 IVGYAMHGFGKDAL--QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           +    +H   KD    +L  E   I       T + L +  A +G+ NE  +    MKD
Sbjct: 588 LGASRVH---KDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKD 643



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M AE V  NE  A+ V+  C  +   + G  +H+ +  +     +V V  AL+ MY   G
Sbjct: 1   MRAEGVCCNEF-ALPVVLKC--VPDAQLGAQVHA-MAMATGFGSDVFVANALVAMYGGFG 56

Query: 158 SLKDARLVFDRV-NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
            + DAR VFD   ++++ V WN ++  Y  +    DA+Q+F EM    ++P++  F  ++
Sbjct: 57  FMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 116

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
           +AC  +  ++ GR+  + M      E  V     +V++  + G+V+ A  ++ +   + D
Sbjct: 117 NACTGSRNIDAGRQ-VHAMVVRMGYEKDVFTANALVDMYVKMGRVDIA-SVIFEKMPDSD 174

Query: 277 SVLWGTLLGACRLHGN 292
            V W  L+  C L+G+
Sbjct: 175 VVSWNALISGCVLNGH 190


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/434 (44%), Positives = 272/434 (62%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK   +  +  +F  + + + V WN +I GY Q G A +AL +F+ M A  V   
Sbjct: 393 LMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLST 452

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +VT  +VL AC    +++    IHS IE S     +  V  +LI+ Y+KCG ++DA  VF
Sbjct: 453 QVTFSSVLRACANTASIKHTVQIHSLIEKS-TFNNDTIVCNSLIDTYAKCGCIRDALKVF 511

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           + +   DVV WN++I GYA+HG   DAL+LFN M +   KP+D+TF+ LLS C   GLVN
Sbjct: 512 ESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVN 571

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +G   FN+M  ++ I+P ++HY C+V LL RAG++ +A K + D+   P  ++W  LL +
Sbjct: 572 QGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSS 631

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H N+ALG+  AE ++     +  TYVLLSN+YAA G  D VA +R  M+  GV+KE 
Sbjct: 632 CVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEV 691

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S +E+  +VH F  G   HP  + I  MLE +N     EGYVP   +VLHD+ E++K 
Sbjct: 692 GLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKA 751

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L VHSE+LA+A+GL  T PG  I+I+KNLR C DCH VFK+ISK   R+I++RD NRF
Sbjct: 752 RMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRF 811

Query: 467 HHFVNGTCSCGDYW 480
           HHF  G CSCGDYW
Sbjct: 812 HHFDEGICSCGDYW 825



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 145/284 (51%), Gaps = 12/284 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK G +  AR +F+ +   DV+ W+ +I  YAQ     +A  +F RM+   V PN
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDA 162
           E +   VL AC  +  L+ G+ IH+ +     IK+  +    VG AL+++Y+KC +++++
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLV-----IKLGYESELFVGNALMDVYAKCRNMENS 406

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +F  + D + V WN++IVGY   GF +DAL +F EM    +  + +TF  +L ACA+ 
Sbjct: 407 LEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANT 466

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
             +    +  +++ ++            +++  ++ G + +A K V +  I+ D V W  
Sbjct: 467 ASIKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALK-VFESIIQCDVVSWNA 524

Query: 283 LLGACRLHGNIALGEKIAEYL-ISQNLANSGTYVLLSNIYAAIG 325
           ++    LHG      ++   +  S    N  T+V L ++  + G
Sbjct: 525 IISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTG 568



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 131/246 (53%), Gaps = 6/246 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  Y+  G V+ AR +FD +  KD V W  M+  Y+++ +  +AL  F +M     +
Sbjct: 189 SSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK 248

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN     +VL A   + +   G+ IH     +        VG AL++MY+KCG ++DAR 
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTL-CDTEPHVGGALLDMYAKCGYIEDART 307

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF+ +   DV++W+ +I  YA     + A ++F  M R  + P++ +  G+L ACA+   
Sbjct: 308 VFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAF 367

Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G++  N  +K  Y  E  V +   ++++ ++   +E + ++   ++ + + V W T+
Sbjct: 368 LDLGQQIHNLVIKLGYESELFVGN--ALMDVYAKCRNMENSLEIFRSLR-DANEVSWNTI 424

Query: 284 L-GACR 288
           + G C+
Sbjct: 425 IVGYCQ 430



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 138/286 (48%), Gaps = 17/286 (5%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS------LTTMLTCYAKQGEVAAARV 62
           D Y    L+      GD  +   + A + QR  V+         +L  YAK G +AAAR 
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           LFD M E+++V +  ++ GYA  G   EA  LFRR+  E  E N      +L     + A
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDA 165

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
                 IH+      + + N  VG++LI+ YS CG++  AR VFD +  KD V W +M+ 
Sbjct: 166 PGLTCCIHACACKLGHDR-NAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVS 224

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA--CAHAGLVNEGRR--FFNTMKDE 238
            Y+ +   +DAL  F++M     KP+      +L A  C  + ++ +G       T+ D 
Sbjct: 225 CYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDT 284

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              EP V   G ++++ ++ G +E+A + V ++    D +LW  L+
Sbjct: 285 ---EPHVG--GALLDMYAKCGYIEDA-RTVFEIIPHDDVILWSFLI 324



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 103/194 (53%), Gaps = 4/194 (2%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YAK G +  A  +F+ + + DVV WN +I GYA HG A +AL LF RM     +P
Sbjct: 493 SLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKP 552

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RL 164
           N+VT VA+LS CG  G +  G  + + +     IK ++   T ++ +  + G L DA + 
Sbjct: 553 NDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKF 612

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAG 223
           + D  +    +VW +++    +H     AL  F+    + ++P D  T++ L +  A AG
Sbjct: 613 IGDIPSTPSPMVWRALLSSCVVH--KNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAG 670

Query: 224 LVNEGRRFFNTMKD 237
           ++++      +M++
Sbjct: 671 ILDQVALLRKSMRN 684


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/440 (42%), Positives = 272/440 (61%), Gaps = 6/440 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK- 102
            ++  YA+ G+   AR +F  ++  DVV WN +I G    G   +A  L R M  L E  
Sbjct: 418 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 477

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN +T + +L  C  + A   G+ IH Y      +  +V VG+AL++MY+KCG L  +
Sbjct: 478 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALS 536

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAH 221
           R VFDR+  ++ + WN +I+ Y MHG G +A  LF+ M      +P+++TF+  L+AC+H
Sbjct: 537 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 596

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LW 280
           +G+V+ G + F+ M+ ++ +EP  +   C+V++L RAG+++EAY +V  M+     V  W
Sbjct: 597 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAW 656

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            T+LGACRLH N+ LGE   E L+      +  YVLL NIY+A G W   A VR+ M+ +
Sbjct: 657 STMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRR 716

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV KEPGCS IE+   +H F+AG+  HP S+E++  +E + G + A GY P T  VLHD+
Sbjct: 717 GVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDM 776

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +  K   L  HSEKLA+AFGL+   PG +I++ KNLRVC DCH   K +SK  GR+I++
Sbjct: 777 DDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVL 836

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF NG CSCGDYW
Sbjct: 837 RDVRRFHHFRNGQCSCGDYW 856



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 138/290 (47%), Gaps = 39/290 (13%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +   +L+ YA+ G VA A+ LF        DVV WN M+    Q G+ +EA+     M+A
Sbjct: 207 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 266

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+ VT  + L AC ++  L+ GR +H+Y+     +  N  V +AL++MY+    + 
Sbjct: 267 LGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVG 326

Query: 161 DARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLS 217
            AR VFD V D  K + +WN+MI GYA  G  ++AL+LF  M       P + T   +L 
Sbjct: 327 KARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLP 386

Query: 218 ACA-----------HAGLVNE---GRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
           ACA           H  +V     G RF  N + D YA                R G+ +
Sbjct: 387 ACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYA----------------RLGKTD 430

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            A ++   + + PD V W TL+  C + G++A   ++A  +  Q L   G
Sbjct: 431 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREM--QQLEEGG 477



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 34/190 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+ +LD D+ V ++LVD+YA                               K G +A +
Sbjct: 508 AVRHALDTDVAVGSALVDMYA-------------------------------KCGCLALS 536

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQ 119
           R +FD +  ++ + WNV+I  Y  HGL  EA VLF RM A  +  PNEVT +A L+AC  
Sbjct: 537 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 596

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--RVNDKDVVVW 177
            G ++ G  +   +E    ++    +   ++++  + G L +A  +       ++ V  W
Sbjct: 597 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAW 656

Query: 178 NSMIVGYAMH 187
           ++M+    +H
Sbjct: 657 STMLGACRLH 666



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 73/372 (19%)

Query: 25  DVLSAEKLFATMPQRSLVSLTT------MLTCYAKQGEVAAARVLFDDMEEK--DVVCWN 76
           D  SA  + A   +R L+   +      +LT YA+ G +AAA  +F  + +   D V +N
Sbjct: 74  DARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFN 133

Query: 77  VMIDGYAQHGLANEALVLFRR---------MLAEKVEP-NEVTAVAVLSACGQI----GA 122
            +I           AL LFRR          +     P    T V+VL A   +     A
Sbjct: 134 SLI----------SALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAA 183

Query: 123 LESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDARLVFDRVND--KDVVVWNS 179
           +  GR  H++   +  +  + +    AL++MY++ G + DA+ +F        DVV WN+
Sbjct: 184 VRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNT 243

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------- 232
           M+      G   +A+Q   +M  + ++P  +TF   L AC+   L++ GR          
Sbjct: 244 MVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDD 303

Query: 233 ---------NTMKDEYAIEPKVEH-----------------YGCMVNLLSRAGQVEEAYK 266
                    + + D YA   +V                   +  M+   ++AG  EEA +
Sbjct: 304 ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALR 363

Query: 267 LVMDMKIE----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIY 321
           L   M+ E    P      ++L AC      A  E +  Y++ + +A N      L ++Y
Sbjct: 364 LFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 423

Query: 322 AAIGNWDGVARV 333
           A +G  D   R+
Sbjct: 424 ARLGKTDVARRI 435


>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 551

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/453 (42%), Positives = 292/453 (64%), Gaps = 15/453 (3%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V   +++  YA  G   AA  +F  + ++ +V WN  +D  A +G    AL LFR M  +
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 102 KVE--PNEVTAVAVLSACGQIGALESGRWIHSYI-------ENSRNIKVNVQVGTALINM 152
           + +  P+  T  +VL AC   GAL  G + H+ +        ++  +  +V +  +L+++
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDL 219

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDIT 211
           Y KCG+++ AR VFDR++++D+  WN+M++  A HG  +D+L LF+ M R+  L P+ IT
Sbjct: 220 YGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAIT 279

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
           F+ +LSAC H GLV+EGRR+F  M  ++ I P++EHYGCMV++L+RAG +EEA  +V  M
Sbjct: 280 FVAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGM 339

Query: 272 KIEPDSVLWGTLLGA-CRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNWDG 329
              PDS++W +LL A C+ +  + L E +A+  +   + A SG YVLLS +YA+   W+ 
Sbjct: 340 NCRPDSIIWRSLLDACCKRNAGLELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWND 399

Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389
           V  +R LM ++G +KEPG SSIE+   VH+F+AGD  HP+S+EIY+ L+EI   L + GY
Sbjct: 400 VGMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGY 459

Query: 390 VPQTQ--IVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVF 447
            P      ++ DI ++ K  +L +HSE+LA++FGL++  PG  I+I+KNLRVC DCH + 
Sbjct: 460 KPDLSEAPMVADI-DRTKGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTIS 518

Query: 448 KLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           KLISK    +I++RDR RFHHF +G+CSC DYW
Sbjct: 519 KLISKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 551


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/445 (42%), Positives = 284/445 (63%), Gaps = 12/445 (2%)

Query: 47  MLTCYAKQGEVAAA--RVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +++ YA+ G   AA  R +FD+M    +D+V WN ++  +AQ+GLA +AL L+RRM + +
Sbjct: 197 LMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPE 256

Query: 103 ---VEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGS 158
              VEP+ VT V VLS+   +GA   G  +  Y+         NVQ+  ALIN +++CGS
Sbjct: 257 GSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGS 316

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L  A+ +FD +  K +V W ++I G+ MHG G  A+ LF  M    ++P ++  + L SA
Sbjct: 317 LPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSA 376

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+HAGL +EGRR+F+ M+  Y + P +EHY CMV+LL RAG++EEA +L+  M +  D  
Sbjct: 377 CSHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGA 436

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +WG LLGAC++H N+ +GE+    +I     N G YVL+SNIY   G  D VARVR +M+
Sbjct: 437 VWGALLGACKIHKNVDVGEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMR 496

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           E+G++KEPGCS +E   +VH F+A D  HP+++ IY ++  +   +K +  + ++++   
Sbjct: 497 ERGLKKEPGCSYVEHKGRVHLFMADDHSHPQARRIYELVIRLELMVKEKSGMRESEVAAA 556

Query: 399 DIGEKQK---QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
             G  +K   Q  + +HSEKLAVAFGL++T+ G+ I ++KNLRVC DCH+  K++S  T 
Sbjct: 557 K-GRMEKAAAQPLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTN 615

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R  ++RD +RFH F  G CSC DYW
Sbjct: 616 RAFLVRDASRFHRFDGGVCSCKDYW 640



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 131/287 (45%), Gaps = 20/287 (6%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV------VCWNVMIDGYAQHGLAN 89
           +P      L+ +LT Y++ G +  A  L D+M  +          +N +I G A H L  
Sbjct: 83  LPAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPV 142

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
            +  LFRRM A  V  + VT +A++ A      L     +H+ +     +     V   L
Sbjct: 143 ASFALFRRMRAAAVGFDAVTLLALVPAT----PLSVVPQVHA-LAARVGLATETSVANCL 197

Query: 150 INMYSKCGSLKD--ARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR- 204
           ++ Y++ G+     AR VFD +    +D+V WN+++  +A +G   DAL+L+  M     
Sbjct: 198 MSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEG 257

Query: 205 --LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQV 261
             ++P  +T +G+LS+ AH G    G    + ++         V+    ++N  +R G +
Sbjct: 258 SGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSL 317

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
             A +L  +M      V W  L+    +HGN  +   + E ++S+ +
Sbjct: 318 PRAQQLFDEMP-RKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGI 363



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ +  +L++ +AR G +  A++LF  MP++S+VS T ++T                   
Sbjct: 300 NVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALIT------------------- 340

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                       G+  HG  + A+ LF RM++E + P+ V  VA+ SAC   G  + GR 
Sbjct: 341 ------------GHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRR 388

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             S +E+   ++  ++  T ++++  + G L++AR L+       D  VW +++    +H
Sbjct: 389 YFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIH 448

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
                  + F  +  I L+P ++ +  L+S
Sbjct: 449 KNVDVGEEAFTRV--IELEPKNVGYYVLMS 476


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 277/435 (63%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y K G+V  A+ +FDD   +++     ++D Y Q     EAL LF +M  ++V P
Sbjct: 277 ALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPP 336

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           NE T   +L++  ++  L+ G  +H  +  S   + +V VG AL+NMY+K GS++DAR  
Sbjct: 337 NEYTFAILLNSIAELSLLKQGDLLHGLVLKS-GYRNHVMVGNALVNMYAKSGSIEDARKA 395

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  +D+V WN+MI G + HG G++AL+ F+ M      P+ ITFIG+L AC+H G V
Sbjct: 396 FSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFV 455

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +G  +FN +  ++ ++P ++HY C+V LLS+AG  ++A   +    IE D V W TLL 
Sbjct: 456 EQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLN 515

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC +  N  LG+K+AEY I +   +SG YVLLSNI+A    W+GVA+VR+LM  +GV+KE
Sbjct: 516 ACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKE 575

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S I + N+ H FLA D +HP+   IY  ++E+   +K  GY P      HD+ E+Q+
Sbjct: 576 PGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQR 635

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +++L  HSEKLAVA+GLI T   + + + KN+R+C DCH+  KLISK + R I++RD NR
Sbjct: 636 EDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNR 695

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF++G CSC DYW
Sbjct: 696 FHHFLDGQCSCCDYW 710



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           +L  M +  +  GE  A RVL DD+   D+  ++  + GY + G   E L + R+   E 
Sbjct: 176 TLVYMYSLCSGNGE--AIRVL-DDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANED 232

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
              N +T ++ L     +  L     +HS +         V+   ALINMY KCG +  A
Sbjct: 233 FVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRF-GFNAEVEACGALINMYGKCGKVLYA 291

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           + VFD  + +++ +  +++  Y      ++AL LF++M    + P++ TF  LL++ A  
Sbjct: 292 QRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAEL 351

Query: 223 GLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            L+ +G       +K  Y     V +   +VN+ +++G +E+A K    M    D V W 
Sbjct: 352 SLLKQGDLLHGLVLKSGYRNHVMVGN--ALVNMYAKSGSIEDARKAFSGMTFR-DIVTWN 408

Query: 282 TLLGACRLHGNIALG----EKIAEYLISQNLANSGTYVLLSNIYAAIGNWD-GVARVRTL 336
           T++  C  HG   LG    E     + +  + N  T++ +    + IG  + G+     L
Sbjct: 409 TMISGCSHHG---LGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQL 465

Query: 337 MKEKGVQKE 345
           MK+  VQ +
Sbjct: 466 MKKFDVQPD 474



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 5/254 (1%)

Query: 20  YARGGDVLSAEKLFATMPQRS--LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
           Y R G+ + A  +      R+     + +++  Y K  E   AR LFD M E++VV W  
Sbjct: 46  YLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCA 105

Query: 78  MIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
           M+ GY   G   E L LF+ M  + +  PNE  A  V  +C   G +E G+  H      
Sbjct: 106 MMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKY 165

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             I     V   L+ MYS C    +A  V D +   D+ V++S + GY   G  K+ L +
Sbjct: 166 GLISHEF-VRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDV 224

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
             +        +++T++  L   ++   +N   +  + M   +    +VE  G ++N+  
Sbjct: 225 LRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMV-RFGFNAEVEACGALINMYG 283

Query: 257 RAGQVEEAYKLVMD 270
           + G+V  A ++  D
Sbjct: 284 KCGKVLYAQRVFDD 297



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 113 VLSACGQIGALESGRWIHSY--IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           +L  C     L  G  IH++  + N  +   +     +LIN+Y KC     AR +FD + 
Sbjct: 37  LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGR 229
           +++VV W +M+ GY   GF  + L+LF  M      +P++     +  +C+++G + EG+
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGK 156

Query: 230 RF 231
           +F
Sbjct: 157 QF 158


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/440 (42%), Positives = 272/440 (61%), Gaps = 6/440 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK- 102
            ++  YA+ G+   AR +F  ++  DVV WN +I G    G   +A  L R M  L E  
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 475

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN +T + +L  C  + A   G+ IH Y      +  +V VG+AL++MY+KCG L  +
Sbjct: 476 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALS 534

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAH 221
           R VFDR+  ++ + WN +I+ Y MHG G +A  LF+ M      +P+++TF+  L+AC+H
Sbjct: 535 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 594

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LW 280
           +G+V+ G + F+ M+ ++ +EP  +   C+V++L RAG+++EAY +V  M+     V  W
Sbjct: 595 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAW 654

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            T+LGACRLH N+ LGE   E L+      +  YVLL NIY+A G W   A VR+ M+ +
Sbjct: 655 STMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRR 714

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV KEPGCS IE+   +H F+AG+  HP S+E++  +E + G + A GY P T  VLHD+
Sbjct: 715 GVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDM 774

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +  K   L  HSEKLA+AFGL+   PG +I++ KNLRVC DCH   K +SK  GR+I++
Sbjct: 775 DDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVL 834

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF NG CSCGDYW
Sbjct: 835 RDVRRFHHFRNGQCSCGDYW 854



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 138/290 (47%), Gaps = 39/290 (13%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +   +L+ YA+ G VA A+ LF        DVV WN M+    Q G+ +EA+     M+A
Sbjct: 205 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 264

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+ VT  + L AC ++  L+ GR +H+Y+     +  N  V +AL++MY+    + 
Sbjct: 265 LGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVG 324

Query: 161 DARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLS 217
            AR VFD V D  K + +WN+MI GYA  G  ++AL+LF  M       P + T   +L 
Sbjct: 325 KARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLP 384

Query: 218 ACA-----------HAGLVNE---GRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
           ACA           H  +V     G RF  N + D YA                R G+ +
Sbjct: 385 ACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYA----------------RLGKTD 428

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            A ++   + + PD V W TL+  C + G++A   ++A  +  Q L   G
Sbjct: 429 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREM--QQLEEGG 475



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 34/190 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+ +LD D+ V ++LVD+YA                               K G +A +
Sbjct: 506 AVRHALDTDVAVGSALVDMYA-------------------------------KCGCLALS 534

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQ 119
           R +FD +  ++ + WNV+I  Y  HGL  EA VLF RM A  +  PNEVT +A L+AC  
Sbjct: 535 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 594

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVW 177
            G ++ G  +   +E    ++    +   ++++  + G L +A  +   +   ++ V  W
Sbjct: 595 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAW 654

Query: 178 NSMIVGYAMH 187
           ++M+    +H
Sbjct: 655 STMLGACRLH 664



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 151/372 (40%), Gaps = 73/372 (19%)

Query: 25  DVLSAEKLFATMPQRSLVSLTT------MLTCYAKQGEVAAARVLFDDMEEK--DVVCWN 76
           D  SA  + A   +R L+   +      +LT YA+ G +AAA  +F  + +   D V +N
Sbjct: 72  DARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFN 131

Query: 77  VMIDGYAQHGLANEALVLFRR---------MLAEKVEP-NEVTAVAVLSACGQI----GA 122
            +I           AL LFRR          +     P    T V+VL A   +     A
Sbjct: 132 SLI----------SALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAA 181

Query: 123 LESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDARLVFDRVND--KDVVVWNS 179
           +  GR  H++   +  +  + +    AL++MY++ G + DA+ +F        DVV WN+
Sbjct: 182 VRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNT 241

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------- 232
           M+      G   +A+Q   +M  + ++P  +TF   L AC+   L++ GR          
Sbjct: 242 MVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDD 301

Query: 233 ---------NTMKDEYAIEPKVEH-----------------YGCMVNLLSRAGQVEEAYK 266
                    + + D YA   +V                   +  M+   ++AG  EEA +
Sbjct: 302 ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALR 361

Query: 267 LVMDMKIE----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGTYVLLSNIY 321
           L   M+ E    P      ++L AC      A  E +  Y++ + +A N      L ++Y
Sbjct: 362 LFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMY 421

Query: 322 AAIGNWDGVARV 333
           A +G  D   R+
Sbjct: 422 ARLGKTDVARRI 433


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/473 (39%), Positives = 288/473 (60%), Gaps = 2/473 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SL+D+YA+ G       +F ++   + +S TTM++ YA+ G    A  LF    
Sbjct: 140 DDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTP 199

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGR 127
            +++  W  +I G  Q G   +A  LF  M  E +   + +   +V+ AC  +   E G+
Sbjct: 200 YRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGK 259

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H  +  +   +  + +  ALI+MY+KC  L  A+ +F  +  KDVV W S+IVG A H
Sbjct: 260 QMHGVVI-TLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQH 318

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL L++EM    +KP+++TF+GL+ AC+HAGLV++GR  F TM +++ I P ++H
Sbjct: 319 GQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQH 378

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+++L SR+G ++EA  L+  M + PD   W  LL +C+ HGN  +  +IA++L++  
Sbjct: 379 YTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLK 438

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +  +Y+LLSNIYA  G W+ V++VR LM     +K PG S I+L    H F AG+  H
Sbjct: 439 PEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSH 498

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P   EI  ++ E++  ++  GY P T  VLHD+ +++K+  L  HSE+LAVA+GL+   P
Sbjct: 499 PMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVP 558

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           GT I+IVKNLRVC DCH V KLIS  T R+I +RD  R+HHF +G CSC D+W
Sbjct: 559 GTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 7/195 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T+L  Y K G +  A  LFD +  +D V W  ++         + AL + R +L+    P
Sbjct: 43  TLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHP 102

Query: 106 NEVTAVAVLSACGQIGAL--ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +     +++ AC  +G L  + G+ +H+    S     +V V ++LI+MY+K G     R
Sbjct: 103 DHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDV-VKSSLIDMYAKFGLPDYGR 161

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD ++  + + W +MI GYA  G   +A +LF +     L      +  L+S    +G
Sbjct: 162 AVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNL----FAWTALISGLVQSG 217

Query: 224 LVNEGRRFFNTMKDE 238
              +    F  M+ E
Sbjct: 218 NGVDAFHLFVEMRHE 232



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           +   L+N Y KCG ++DA  +FD +  +D V W S++    +      AL +   +    
Sbjct: 40  IPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTG 99

Query: 205 LKPSDITFIGLLSACAHAGLVN-------EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
             P    F  L+ ACA+ G+++         R F +   D+  ++        ++++ ++
Sbjct: 100 FHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVK------SSLIDMYAK 153

Query: 258 AGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            G + +  + V D     +S+ W T++
Sbjct: 154 FG-LPDYGRAVFDSISSLNSISWTTMI 179


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/436 (43%), Positives = 281/436 (64%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  YAK G++  AR +FD+M  ++VV W+ MI GY Q G   EA+ LF+  L E ++
Sbjct: 194 SSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLD 253

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N+ T  +V+  CG    LE G+ IH     + +  ++  VG++LI++YSKCG ++ A  
Sbjct: 254 VNDFTLSSVIRVCGSATLLELGKQIHGLCFKT-SYDLSGFVGSSLISLYSKCGLIEGAYR 312

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD V  K++ +WN+M++  A H   K+A  LF +M    ++P+ ITF+ +L AC+HAGL
Sbjct: 313 VFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGL 372

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V EG+++F  MK +Y IEP  +HY  MV+LL RAG+++EA  ++  M  EP   +WG  +
Sbjct: 373 VEEGKKYFALMK-KYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFI 431

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
             CR+HGN  L    A+ +      +SG +V+LSN YAA G ++  A+ R +++++GV+K
Sbjct: 432 TGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKK 491

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E G S IE  N+VH+F AGD  H + KEIY  LE++   ++  GYV  T  VL ++G ++
Sbjct: 492 ETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEE 551

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  ++  HSE+LA+AFGLIS   G  I+I+KNLRVC DCH   K ISK +GR I++RD N
Sbjct: 552 KNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNN 611

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +G CSC DYW
Sbjct: 612 RFHRFEDGKCSCADYW 627



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K      +  +F++ E K    W+ +I  +AQ+     A+  F RM+ E + P+
Sbjct: 95  LINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPD 154

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +    +   AC  +G  + G+ +H  +  +    V+V VG++L++MY+KCG +K+AR VF
Sbjct: 155 DHIFPSATKACAILGRCDVGKSVHCLVIKT-GYDVDVFVGSSLVDMYAKCGDIKEARNVF 213

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D +  ++VV W+ MI GY   G  ++A++LF E     L  +D T   ++  C  A L+ 
Sbjct: 214 DEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLE 273

Query: 227 EGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            G++      K  Y +   V     +++L S+ G +E AY++  ++ I+ +  +W  +L 
Sbjct: 274 LGKQIHGLCFKTSYDLSGFVG--SSLISLYSKCGLIEGAYRVFDEVPIK-NLGMWNAMLI 330

Query: 286 ACRLHGN 292
           AC  H +
Sbjct: 331 ACAQHAH 337



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 33/187 (17%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K S D   +V +SL+ LY++ G +  A ++F  +P ++L     ML              
Sbjct: 284 KTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAML-------------- 329

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                    + C        AQH    EA  LF +M    + PN +T + VL AC   G 
Sbjct: 330 ---------IAC--------AQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGL 372

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSMI 181
           +E G+   + ++    I+   Q   +++++  + G L++A  V   +  +    VW + I
Sbjct: 373 VEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFI 431

Query: 182 VGYAMHG 188
            G  +HG
Sbjct: 432 TGCRIHG 438


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 299/461 (64%), Gaps = 20/461 (4%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           + +V LT +L  +A+ G +A AR +FD +E K+VVCW+ MI GY Q     EAL LFR+M
Sbjct: 308 KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQM 367

Query: 99  LAE------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
           L E      +V+PN VT V+V++AC ++GA  S   IH Y   +  +  + ++ +ALI+M
Sbjct: 368 LMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVAT-GLDQDARIASALIDM 426

Query: 153 YSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
            +KCG ++  R VF  +++  + VV W+SMI    +HG GK AL+LF+EM     +P++I
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEI 486

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           T+I +LSAC+HAGLV +G+  FN+M+ +Y + P  +HY C+V+LL RAG ++EA+ ++++
Sbjct: 487 TYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILN 546

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
           M I+ D  LWG+LL AC LHGN  LGE + + ++S +  + G +VLL+N+Y   G WD V
Sbjct: 547 MPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDV 606

Query: 331 ARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL-KAEGY 389
            R+R  ++  G++K PG S IE+ N+V+ F+A D  HP+S+ IY  L+ ++  + KA  Y
Sbjct: 607 VRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKY 666

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI----------STQPGTSIKIVKNLRV 439
           V +T + + D          + HSE+LA+AFGLI          S +  T I+I KNLRV
Sbjct: 667 VTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRV 726

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCHA  KL+SK   R++++RD +RFHHF +G CSCGDYW
Sbjct: 727 CRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 158/307 (51%), Gaps = 51/307 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK+      ++  S+V +Y+   DV  A ++F  +P                        
Sbjct: 192 VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIP------------------------ 227

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE---KVEPNEVTAVAVLSACG 118
                +E++DVV WN +I G+  +G A  AL  F  M++E    VEPN VT +A+L +C 
Sbjct: 228 -----IEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCA 282

Query: 119 QIGALESGRWIHSYIENSRN---IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           ++G +E+  W+H YI +  +   +  +V V TAL++M+++CG+L  AR +FD V  K+VV
Sbjct: 283 ELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVV 342

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCR------IRLKPSDITFIGLLSACAHAGLVNEGR 229
            W++MI GY      ++AL+LF +M        + +KP+ +T + +++AC+  G      
Sbjct: 343 CWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA- 401

Query: 230 RFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL-WGTLL 284
               +M  +YA+   ++        ++++ ++ G +E   ++  +M     +V+ W +++
Sbjct: 402 ----SMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMI 457

Query: 285 GACRLHG 291
           GA  +HG
Sbjct: 458 GAEGIHG 464



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 47/240 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +  L  D + + +LVD Y + G    A ++F  MP+ S+                    
Sbjct: 79  TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV-------------------- 118

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-------AEKVEPNEVTAVAVL 114
                    DVV W  +I  Y+ +G  +EA   F RM        +E    + V+  A++
Sbjct: 119 ---------DVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALV 169

Query: 115 SACGQIG----ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--R 168
           SAC  +G     L  G  +H  +       V+  +G ++++MYS C  +  A  VF+   
Sbjct: 170 SACA-VGCGSNCLRRGSAVHGLVVK-YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIP 227

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFIGLLSACAHAGLV 225
           +  +DVV WNS+I G+ ++G  + AL+ F +M       ++P+ +T I LL +CA  G V
Sbjct: 228 IEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCV 287



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 30/189 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V   LD+D  ++++L+D+ A+ GD+    ++F+ M                        
Sbjct: 408 AVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM------------------------ 443

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                D   + VV W+ MI     HG    AL LF  M     EPNE+T ++VLSAC   
Sbjct: 444 -----DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHA 498

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNS 179
           G +E G+   + +E    +    +    L+++  + G L +A  ++ +     D+ +W S
Sbjct: 499 GLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGS 558

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 559 LLAACHLHG 567



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 131/315 (41%), Gaps = 48/315 (15%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +  KD   WN +I   A       AL  F RM A  V  N  T  A+L AC  +  L   
Sbjct: 13  ISHKDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGY 184
             +H+Y+     +  +     AL++ Y KCG    A  VFD + +   DVV W ++I  Y
Sbjct: 72  LQVHAYL-TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 185 AMHGFGKDALQLFNEMCRIR------LKPSDITFIG-LLSACAHAGLVNEGRRFFNTMKD 237
           + +G   +A   F  M  +R          D+  +G L+SACA    V  G    N ++ 
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACA----VGCGS---NCLRR 183

Query: 238 EYAIEPKVEHYG---------CMVNLLSRAGQVEEAYKLVMDMKIEP-DSVLWGTLLGAC 287
             A+   V  YG          MV++ S    V  A+++   + IE  D V W +L+   
Sbjct: 184 GSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGF 243

Query: 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
            L+G      +  E ++S+     GT  +  N    I           L+K      E G
Sbjct: 244 XLNGEAERALRTFEDMVSE-----GTSAVEPNRVTVI----------ALLKSCA---ELG 285

Query: 348 CSSIELSNKVHEFLA 362
           C  +E S+ VHE+++
Sbjct: 286 C--VETSSWVHEYIS 298


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 272/434 (62%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y + G +  AR +FD M+  D   W  MI    ++    EAL LF RM  E + P 
Sbjct: 130 LLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPT 189

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT  +VL+AC   GAL+ G+ IHS ++ S     +V   TAL++MY+KCGSL+ +  VF
Sbjct: 190 SVTLASVLNACACSGALKVGKQIHSRLDAS-GFHSSVLAQTALLDMYAKCGSLECSSKVF 248

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  ++ V W +MI   A HG G +AL+LF EM    +     TFI +L AC+HAGL+ 
Sbjct: 249 TAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIK 308

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E   FF++M ++YAI P   HY   ++ + RAG++++A +L+  M   P+++ W TLL A
Sbjct: 309 ESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNA 368

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H       K+AE L      +S  Y LL N+YAA G +    RVR  M ++G++K P
Sbjct: 369 CRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVP 428

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S IE+ NKVHEF+AGD  HP   EI + LE++ G ++  GYVP T+ VLH + E++K+
Sbjct: 429 GKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKE 488

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             + +HSEKLA+AFGLI+T PGT + IVKNLRVC DCHA  K+I+K   R+I++RD +RF
Sbjct: 489 QLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRF 548

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSC DYW
Sbjct: 549 HHFEDGQCSCKDYW 562



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 17/288 (5%)

Query: 34  ATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93
           AT+ Q  LVS+      YAK G +  AR +F+ + E+ VV W+ MI  YA HG   EAL+
Sbjct: 19  ATIAQNGLVSM------YAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALL 72

Query: 94  LFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALIN 151
           LF RM  + +VEPN +T   V +ACG I  LE GR IH+    S  +K  N  +  AL+N
Sbjct: 73  LFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLN 132

Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
           MY +CGSL++AR VFD ++  D   W SMI     +    +AL+LF+ M    + P+ +T
Sbjct: 133 MYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVT 192

Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
              +L+ACA +G +  G++  + + D       V     ++++ ++ G +E + K+   M
Sbjct: 193 LASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAM 251

Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYV 315
           +   +SV W  ++ A   HG    G++  E     NL    A++ T++
Sbjct: 252 ETR-NSVSWTAMIAALAQHGQ---GDEALELFKEMNLEGMVADATTFI 295



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 5/188 (2%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           +L A+    S+++ T +L  YAK G +  +  +F  ME ++ V W  MI   AQHG  +E
Sbjct: 215 RLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDE 274

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTAL 149
           AL LF+ M  E +  +  T + VL AC   G + ES  + HS +E+            AL
Sbjct: 275 ALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRAL 334

Query: 150 INMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
            +   + G L+DA  L+       + + W +++    +H   + A ++   +   +L P 
Sbjct: 335 -DTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLS--KLAPE 391

Query: 209 DITFIGLL 216
           D     LL
Sbjct: 392 DSMAYTLL 399


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/418 (44%), Positives = 268/418 (64%), Gaps = 1/418 (0%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
           +F+     D++ +  MI   +Q     +A+ LF  ML + ++P+     ++L+AC  + A
Sbjct: 461 VFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSA 520

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
            E G+ +H+++   R    +V  G AL+  Y+KCGS++DA L F  + +K VV W++MI 
Sbjct: 521 YEQGKQVHAHLIK-RQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIG 579

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
           G A HG GK AL +F+ M    + P+ IT   +L AC HAGLV+E +R+FN+MK+ + IE
Sbjct: 580 GLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIE 639

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
              EHY CM++LL RAG++++A +LV  M  + ++ +WG LL A R+H +  LG   AE 
Sbjct: 640 RTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEK 699

Query: 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLA 362
           L       SGT+VLL+N YA+ G WD VA+VR LMK+  V+KEP  S +EL +KVH F+ 
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIV 759

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422
           GD  HP++++IY  L+E+   +   GYVP  ++ LHD+ + +K+  L  HSE+LAVAF L
Sbjct: 760 GDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFAL 819

Query: 423 ISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           IST  G  I++ KNLR+C DCHA FK IS    R+I++RD NRFHHF +G CSC DYW
Sbjct: 820 ISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 137/270 (50%), Gaps = 20/270 (7%)

Query: 23  GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDG 81
           GGD+  A  L A                Y   G V  AR++FD+   E++ V WN ++  
Sbjct: 132 GGDIFVANALVAM---------------YGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           Y ++   + A+ +F  M+   V+PNE     V++AC     LE+GR +H+ +  +   K 
Sbjct: 177 YVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDK- 235

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           +V    AL++MYSK G ++ A +VF +V + DVV WN+ I G  +HG  + AL+L  +M 
Sbjct: 236 DVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMK 295

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              L P+  T   +L ACA +G  N GR+    M    A       +G +V++ ++ G +
Sbjct: 296 SSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLL 354

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           ++A K V D   + D VLW  L+  C  HG
Sbjct: 355 DDAKK-VFDWIPQRDLVLWNALISGCS-HG 382



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 156/342 (45%), Gaps = 41/342 (11%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
            + + +   ++  Y+K G++  A V+F  + E DVV WN  I G   HG    AL L  +
Sbjct: 234 DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M +  + PN  T  ++L AC   GA   GR IH ++  + N   +  +   L++MY+K G
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKA-NADSDNYIAFGLVDMYAKHG 352

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI---TFIG 214
            L DA+ VFD +  +D+V+WN++I G +      +AL LF   CR+R +  D+   T   
Sbjct: 353 LLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLF---CRMRKEGFDVNRTTLAA 409

Query: 215 LLSACAHAGLVNEGRRF------FNTMKDEYAIEPKVEHY-------------------- 248
           +L + A    +++ R+          + D + +   ++ Y                    
Sbjct: 410 VLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYD 469

Query: 249 ----GCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
                 M+  LS+    E+A KL M+M    ++PD  +  +LL AC        G+++  
Sbjct: 470 IIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 302 YLIS-QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +LI  Q +++      L   YA  G+ +      + + EKGV
Sbjct: 530 HLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGV 571



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 147/347 (42%), Gaps = 51/347 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK + D D Y++  LVD+YA+ G +  A+K+F  +PQR                      
Sbjct: 330 VKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQR---------------------- 367

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                    D+V WN +I G +      EAL LF RM  E  + N  T  AVL +   + 
Sbjct: 368 ---------DLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A+   R +H+  E    +  +  V   LI+ Y KC  L  A  VF++    D++ + SMI
Sbjct: 419 AISDTRQVHALAEKLGFLS-DSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMI 477

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------NTM 235
              +    G+DA++LF EM R  L P       LL+ACA      +G++          M
Sbjct: 478 TALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 236 KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIAL 295
            D +A    V  Y       ++ G +E+A  L      E   V W  ++G    HG+   
Sbjct: 538 SDVFAGNALVYTY-------AKCGSIEDA-DLAFSGLPEKGVVSWSAMIGGLAQHGHGKR 589

Query: 296 GEKIAEYLISQNLANSGTYVLLSNIYAAI---GNWDGVARVRTLMKE 339
              +   ++ +++  S  ++ ++++  A    G  D   R    MKE
Sbjct: 590 ALDVFHRMVDEHI--SPNHITMTSVLCACNHAGLVDEAKRYFNSMKE 634



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 9/280 (3%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSL--TTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           L+  YA    +L    + A + +  L ++    +L+ Y+K     +AR +FD++ +   V
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHV 69

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
            W+ ++  Y+ + +  +AL  FR M +  V  NE     VL      G    G  +H+ +
Sbjct: 70  SWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHA-L 125

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKD 192
             +  +  ++ V  AL+ MY   G + +AR+VFD    +++ V WN ++  Y  +     
Sbjct: 126 AMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSH 185

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
           A+++F EM    ++P++  F  +++AC  +  +  GR+  + M      +  V     +V
Sbjct: 186 AVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRK-VHAMVIRTGYDKDVFTANALV 244

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           ++ S+ G +  A  +V     E D V W   +  C LHG+
Sbjct: 245 DMYSKLGDIRMA-AVVFGKVPETDVVSWNAFISGCVLHGH 283



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
           LD D +V +SL++  A        +++ A + +R  +S       ++  YAK G +  A 
Sbjct: 501 LDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDAD 560

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
           + F  + EK VV W+ MI G AQHG    AL +F RM+ E + PN +T  +VL AC   G
Sbjct: 561 LAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAG 620

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
            ++  +   + ++    I+   +    +I++  + G L DA  LV       +  VW ++
Sbjct: 621 LVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGAL 680

Query: 181 IVGYAMH 187
           +    +H
Sbjct: 681 LAASRVH 687


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/460 (41%), Positives = 285/460 (61%), Gaps = 32/460 (6%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            ++   D D+++ +SL+D+YA+   V  + ++F  +PQ                      
Sbjct: 222 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH--------------------- 260

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                     D + WN +I G  Q+G+ +E L  F++ML  K++PN V+  +++ AC  +
Sbjct: 261 ----------DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHL 310

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             L  G+ +H YI  SR    NV + +AL++MY+KCG+++ AR +FD++   D+V W +M
Sbjct: 311 TTLHLGKQLHGYIIRSR-FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAM 369

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I+GYA+HG   DA+ LF  M    +KP+ + F+ +L+AC+HAGLV+E  ++FN+M  +Y 
Sbjct: 370 IMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR 429

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P +EHY  + +LL R G++EEAY+ + DM IEP   +W TLL ACR+H NI L EK++
Sbjct: 430 IIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVS 489

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L + +  N G YVLLSNIY+A G W    ++R  M++KG++K+P CS IE+ NKVH F
Sbjct: 490 KKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAF 549

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
           +AGD  HP    I   L+ +   ++ EGYV  T  VLHD+ E+QK+  L  HSE+LA+ F
Sbjct: 550 VAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITF 609

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
           G+IST  GT+I++ KNLRVC DCH   K ISK  GR+I+ 
Sbjct: 610 GIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVF 649



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 13/241 (5%)

Query: 57  VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
           + + R +F+ M ++D+V WN +I G AQ+G+  +AL++ R M    + P+  T  +VL  
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 117 CGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
             +   L  G+ IH Y I N  +   +V +G++LI+MY+KC  + D+  VF  +   D +
Sbjct: 206 FAEYVNLLKGKEIHGYAIRNGYD--ADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 263

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235
            WNS+I G   +G   + L+ F +M   ++KP+ ++F  ++ ACAH   ++ G++     
Sbjct: 264 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG-- 321

Query: 236 KDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              Y I  + +        +V++ ++ G +  A  +   M++  D V W  ++    LHG
Sbjct: 322 ---YIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHG 377

Query: 292 N 292
           +
Sbjct: 378 H 378


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/437 (43%), Positives = 282/437 (64%), Gaps = 3/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T+++  Y K G +  A  LF+++  +DVV W+ +I G+A++G A E++ +FR+MLA+ V 
Sbjct: 254 TSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVT 313

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDAR 163
           PN VT  +++ AC  +G+L+ GR +H Y+   RN ++++V+  T+ I+MY+KCG +  A 
Sbjct: 314 PNSVTFASIVLACSSLGSLKQGRSVHGYM--IRNGVELDVKNYTSFIDMYAKCGCIVTAY 371

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF ++ +K+V  W++MI G+ MHG   +AL LF EM  +   P+ +TF+ +LSAC+H+G
Sbjct: 372 RVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSG 431

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            + EG   F +M  +Y I P  EHY CMV+LL RAG+++EA   + +M  EP +  WG L
Sbjct: 432 RIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGAL 491

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR+H    L E++A+ L+      SG YV+LSNIYA +G W+ V + R  M EKG+ 
Sbjct: 492 LGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIH 551

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           K  G +SIE+  K++ F + D    K+ +I  +   +   ++  GYVP  + VLHD+ ++
Sbjct: 552 KIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDE 611

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            KQ  L  HSEKLA+ FGL+++  G  I+I KN+RVC DCH   K IS  T RKI+MRD 
Sbjct: 612 VKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDV 671

Query: 464 NRFHHFVNGTCSCGDYW 480
            RFHH  +G CSCGDYW
Sbjct: 672 KRFHHVQDGVCSCGDYW 688



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 149/299 (49%), Gaps = 4/299 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  Y + G +  A  +F+++  K+ V W VMI G+           LF RM     E 
Sbjct: 153 ALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFEL 212

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +      ++ ACG + A + G+  H        I  N  + T+L++MY KCG L  A  +
Sbjct: 213 DPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKL 272

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F+ ++ +DVVVW+++I G+A +G   +++ +F +M    + P+ +TF  ++ AC+  G +
Sbjct: 273 FEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSL 332

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +GR     M     +E  V++Y   +++ ++ G +  AY++   +  E +   W T++ 
Sbjct: 333 KQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMIN 390

Query: 286 ACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIGNW-DGVARVRTLMKEKGV 342
              +HG  A    +   + S N L NS T+V + +  +  G   +G +  +++ ++ G+
Sbjct: 391 GFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGI 449



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 141/340 (41%), Gaps = 36/340 (10%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
            RSL+    +   Y + G +  A   F+ +  +++  WN ++  ++++    + L LF+R
Sbjct: 44  HRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKR 103

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML E    +    V  + AC  +   +  +  HS     R ++ +  V  AL+N+Y++ G
Sbjct: 104 MLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLR-LEGDPYVAPALMNVYTELG 162

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           SL++A  VF+ V  K+ V+W  MI G+          +LF+ M R   +       GL+ 
Sbjct: 163 SLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQ 222

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM------ 271
           AC +     EG+ F      +  I+        +V++  + G ++ A KL  ++      
Sbjct: 223 ACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVV 282

Query: 272 ----------------------------KIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
                                        + P+SV + +++ AC   G++  G  +  Y+
Sbjct: 283 VWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYM 342

Query: 304 ISQNLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           I   +  +   Y    ++YA  G      RV   + EK V
Sbjct: 343 IRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNV 382



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 32/129 (24%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++  ++ D+   TS +D+YA+ G +++A ++F  +P++++ S +TM              
Sbjct: 343 IRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTM-------------- 388

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                            I+G+  HGL  EAL LF  M +    PN VT V+VLSAC   G
Sbjct: 389 -----------------INGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSG 431

Query: 122 ALESGRWIH 130
            +E G W H
Sbjct: 432 RIEEG-WSH 439


>gi|297792411|ref|XP_002864090.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309925|gb|EFH40349.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/431 (43%), Positives = 279/431 (64%), Gaps = 9/431 (2%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAV 111
           K GE   A+ +  +  +++V+ WN+MI GY ++    EAL   + ML+    +PN+ +  
Sbjct: 110 KIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKPNKFSFA 169

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           + L+AC ++G L   +W+HS + +   I+ N  + +AL+++Y+KCG ++ +R VF  V  
Sbjct: 170 SSLAACARLGDLHHAKWVHSLMIDG-GIEFNAILSSALVDVYAKCGDIETSREVFCSVKR 228

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            DV +WN+MI G+A HG   +A+++F+EM    + P  ITF+GLL+AC+H GL+ EG+ +
Sbjct: 229 NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLEEGKEY 288

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           F  M   ++I+PK+EHYG MV+LL RAGQV+EAY+L+  M IEPD V+W +LL + R   
Sbjct: 289 FGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLLSSSRTFK 348

Query: 292 NIALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           N  LGE     +  QNL  A SG YVLLSNIY++   W+   +VR LM ++G++K  G S
Sbjct: 349 NPELGE-----IAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMTKEGIRKAKGKS 403

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            +E    +H F AGD  H ++K IY +LE +    K+EG+V  T +VL D+ E++K+ +L
Sbjct: 404 WVEFGGVIHRFKAGDTSHIETKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEKEENL 463

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEKLA+A+ ++ + PGT I+I KN+R+C DCH   K +SK   R I MRDR RFH F
Sbjct: 464 NYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVITMRDRIRFHRF 523

Query: 470 VNGTCSCGDYW 480
            +G CSC DYW
Sbjct: 524 EDGLCSCKDYW 534



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 80/138 (57%), Gaps = 1/138 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  YAK G++  +R +F  ++  DV  WN MI G+A HGLA EA+ +F  M AE V 
Sbjct: 204 SALVDVYAKCGDIETSREVFCSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVS 263

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-R 163
           P+ +T + +L+AC   G LE G+     +    +I+  ++   A++++  + G +K+A  
Sbjct: 264 PDSITFLGLLTACSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYE 323

Query: 164 LVFDRVNDKDVVVWNSMI 181
           L+     + DVV+W S++
Sbjct: 324 LIESMPIEPDVVIWRSLL 341



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKP 207
           +I    K G    A+ V    +D++V+ WN MI GY  +   ++AL+    M      KP
Sbjct: 104 IIESLVKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDFKP 163

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           +  +F   L+ACA  G ++  +   + M D   IE        +V++ ++ G +E + ++
Sbjct: 164 NKFSFASSLAACARLGDLHHAKWVHSLMIDG-GIEFNAILSSALVDVYAKCGDIETSREV 222

Query: 268 VMDMKIEPDSVLWGTLLGACRLHG 291
              +K   D  +W  ++     HG
Sbjct: 223 FCSVK-RNDVSIWNAMITGFATHG 245


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/429 (44%), Positives = 276/429 (64%), Gaps = 1/429 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L +  ++L+ YAK G +  A  LFD+M  KD V ++ ++ GY Q+G A EA ++F++M A
Sbjct: 260 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 319

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             VEP+  T V+++ AC  + AL+ GR  H  +   R +     +  ALI+MY+KCG + 
Sbjct: 320 CNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI-IRGLASETSICNALIDMYAKCGRID 378

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            +R VF+ +  +D+V WN+MI GY +HG GK+A  LF EM  +   P  +TFI LLSAC+
Sbjct: 379 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+GLV EG+ +F+ M   Y + P++EHY CMV+LLSR G ++EAY+ +  M +  D  +W
Sbjct: 439 HSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 498

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLGACR++ NI LG+K++  +       +G +VLLSNIY+A G +D  A VR + K +
Sbjct: 499 VALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQ 558

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +K PGCS IE++  +H F+ GD  HP+S EIY  L+ I   +K  GY P T  VL D+
Sbjct: 559 GFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDL 618

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K+ +L  HSEKLA+A+G++S     +I + KNLRVC DCH V K IS    R I++
Sbjct: 619 EEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIV 678

Query: 461 RDRNRFHHF 469
           RD NRFHHF
Sbjct: 679 RDANRFHHF 687



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 173/393 (44%), Gaps = 97/393 (24%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  DL+VST+L+D+Y +   +  A  +FATMP                            
Sbjct: 41  LQADLFVSTALLDMYVKCACLPDAAHIFATMP---------------------------- 72

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEAL--VLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
               +D+V WN M+ GYA HG+ + A+  +L  +M   ++ PN  T VA+L    Q GAL
Sbjct: 73  ---ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGAL 129

Query: 124 ESGRWIHSY-----IENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174
             G  +H+Y     +  +RN K      V +GTAL++MY+KCGSL  AR VFD +  ++ 
Sbjct: 130 AQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE 189

Query: 175 VVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFI------------------ 213
           V W+++I G+ +      A  LF  M       L P+ I                     
Sbjct: 190 VTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHA 249

Query: 214 ---------------GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
                           LLS  A AGL+++    F    DE A++  V  Y  +V+   + 
Sbjct: 250 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF----DEMAVKDTVS-YSALVSGYVQN 304

Query: 259 GQVEEAYKLVMDMK---IEPDSVLWGTLLGACR-----LHGNIALGEKIAEYLISQ-NLA 309
           G+ EEA+ +   M+   +EPD+    +L+ AC       HG  + G  I   L S+ ++ 
Sbjct: 305 GRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSIC 364

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           N+     L ++YA  G  D   +V  +M  + +
Sbjct: 365 NA-----LIDMYAKCGRIDLSRQVFNMMPSRDI 392



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 135/264 (51%), Gaps = 7/264 (2%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  YAK G +  AR +FD M  ++ V W+ +I G+       +A +LF+ MLA+ + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 105 PNEVTAVA-VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
               T++A  L AC  +  L  G  +H+ +  S  +  ++  G +L++MY+K G +  A 
Sbjct: 222 FLSPTSIASALRACASLDHLRMGEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD +  KD V +++++ GY  +G  ++A  +F +M    ++P   T + L+ AC+H  
Sbjct: 281 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 340

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  GR    ++     +  +      ++++ ++ G+++ + + V +M    D V W T+
Sbjct: 341 ALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLS-RQVFNMMPSRDIVSWNTM 398

Query: 284 LGACRLHGNIALGEKIAEYLISQN 307
           +    +HG   LG++     +  N
Sbjct: 399 IAGYGIHG---LGKEATALFLEMN 419



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML  +V PN  T    L AC  +     GR IH +  ++  ++ ++ V TAL++MY KC 
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHA-GLQADLFVSTALLDMYVKCA 59

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ--LFNEMCRIRLKPSDITFIGL 215
            L DA  +F  +  +D+V WN+M+ GYA HG    A+   L  +M   RL+P+  T + L
Sbjct: 60  CLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 119

Query: 216 LSACAHAGLVNEG 228
           L   A  G + +G
Sbjct: 120 LPLLAQQGALAQG 132



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 34/178 (19%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L  +  +  +L+D+YA+ G +  + ++F  MP R +VS  TM                  
Sbjct: 357 LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTM------------------ 398

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG-ALE 124
                        I GY  HGL  EA  LF  M      P+ VT + +LSAC   G  +E
Sbjct: 399 -------------IAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMI 181
              W H  + +   +   ++    ++++ S+ G L +A      +  + DV VW +++
Sbjct: 446 GKHWFH-VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/431 (42%), Positives = 282/431 (65%), Gaps = 9/431 (2%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAV 111
           K GE   A+ +  +  +++V+ WN+MI GY ++    EAL   + ML+   ++PN+ +  
Sbjct: 110 KIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFA 169

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           + L+AC ++G L   +W+HS + +S  I++N  + +AL+++Y+KCG +  +R VF  V  
Sbjct: 170 SSLAACARLGDLHHAKWVHSLMIDS-GIELNAILSSALVDVYAKCGDIGTSREVFYSVKR 228

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            DV +WN+MI G+A HG   +A+++F+EM    + P  ITF+GLL+ C+H GL+ EG+ +
Sbjct: 229 NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEY 288

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           F  M   ++I+PK+EHYG MV+LL RAG+V+EAY+L+  M IEPD V+W +LL + R + 
Sbjct: 289 FGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYK 348

Query: 292 NIALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           N  LGE     +  QNL  A SG YVLLSNIY++   W+   +VR LM ++G++K  G S
Sbjct: 349 NPELGE-----IAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKS 403

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            +E    +H F AGD  H ++K IY +LE +    K++G+V  T +VL D+ E++K+ +L
Sbjct: 404 WLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENL 463

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEKLA+A+ ++ + PGT I+I KN+R+C DCH   K +SK   R I+MRDR RFH F
Sbjct: 464 NYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRF 523

Query: 470 VNGTCSCGDYW 480
            +G CSC DYW
Sbjct: 524 EDGLCSCRDYW 534


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/436 (42%), Positives = 278/436 (63%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K   V  A  +F  M  K+++ W  MI GY Q+G   EA+ +F  M  + ++
Sbjct: 316 SALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIK 375

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T  +V+S+C  + +LE G   H     S  ++  V V  AL+ +Y KCGS++DA  
Sbjct: 376 PDDFTLGSVISSCANLASLEEGAQFHCLALVS-GLRPYVTVSNALVTLYGKCGSIEDAHR 434

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD ++  D V W ++++GYA  G  K+ + LF +M    +KP  +TFIG+LSAC+ +GL
Sbjct: 435 LFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGL 494

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V++GR +F++M+ ++ I P  +HY CM++L SR+G +++A + +  M   PD+  W TLL
Sbjct: 495 VDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLL 554

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACRL G++ +G+  AE L+  +  N  +YVLL +++A+ G W+ VA++R  M+++ V+K
Sbjct: 555 SACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKK 614

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS I+  NKVH F A D  HP S+ IY  L+ +N  +  EGY P    VLHD+ + +
Sbjct: 615 EPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAE 674

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K + L  HSEKLA+AFGLI   P   I+IVKNLRVC DCH   K ISK TGR I++RD  
Sbjct: 675 KVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 734

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F NG CSCGD+W
Sbjct: 735 RFHKFSNGICSCGDFW 750



 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 178/302 (58%), Gaps = 3/302 (0%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           +  + LVD+YA+ G +  A ++F  M  +++V   TM+T   +   VA AR LF+ +EE+
Sbjct: 181 FTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEER 240

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           D + W  M+ G  Q+GL +EAL +FRRM AE V  ++ T  ++L+ACG + ALE G+ IH
Sbjct: 241 DSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIH 300

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
           +YI  +   + NV VG+AL++MYSKC S++ A  VF R+  K+++ W +MIVGY  +G G
Sbjct: 301 AYITRT-CYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCG 359

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           ++A+++F+EM R  +KP D T   ++S+CA+   + EG + F+ +     + P V     
Sbjct: 360 EEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNA 418

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           +V L  + G +E+A++L  +M    D V W  L+      G       + E ++S+ +  
Sbjct: 419 LVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKP 477

Query: 311 SG 312
            G
Sbjct: 478 DG 479



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 149/404 (36%), Gaps = 106/404 (26%)

Query: 32  LFATMPQRSLVSL-TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           +  T+P  S   L  T+LT YA  G +  AR +FD M  +++V  N ++   A+ GL  +
Sbjct: 36  ILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRD 95

Query: 91  ALVLFRRMLAEK---------------------------------VEPNEVTAVAVLSAC 117
              LF  +                                     V P+ +T   V+   
Sbjct: 96  MERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVA 155

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--------- 168
             +G    GR +H  I            G+ L++MY+K G + DAR VFD          
Sbjct: 156 SALGDRALGRQVHCQILR-LGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMC 214

Query: 169 ----------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
                                 + ++D + W +M+ G   +G   +AL +F  M    + 
Sbjct: 215 NTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVG 274

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFF---------------NTMKDEYA----------- 240
               TF  +L+AC     + EG++                 + + D Y+           
Sbjct: 275 IDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAV 334

Query: 241 ----IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNI 293
               +   +  +  M+    + G  EEA ++  +M+   I+PD    G+++ +C    N+
Sbjct: 335 FRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSC---ANL 391

Query: 294 ALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARV 333
           A  E+ A++     ++    YV +SN    +Y   G+ +   R+
Sbjct: 392 ASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRL 435


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/444 (42%), Positives = 281/444 (63%), Gaps = 2/444 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R      ++L+ Y   GE++ A VLFD ME+K +V WN M++GY Q+G    AL LFR+
Sbjct: 526 ERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQ 585

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   V+P E++ ++V  AC  + +L  GR  H Y      ++ N  +  ++I+MY+K G
Sbjct: 586 MVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCL-LEDNAFIACSVIDMYAKNG 644

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+ ++  VF+ + ++ V  WN+M++GY +HG  K+A++LF EM R    P ++TF+G+L+
Sbjct: 645 SVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLT 704

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD-MKIEPD 276
           AC H+GLV+EG  + + MK  + + P ++HY C++++L RAG+++EA K+  + M  EP 
Sbjct: 705 ACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPG 764

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
             +W  LL +CR+H N+ +GEKIA  L          YVLLSN+YA  G WD V +VR  
Sbjct: 765 VGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQR 824

Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
           MKE  ++K+ GCS IEL+ KV  F+AG+      +EI  +   +   +   GY P T  V
Sbjct: 825 MKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSV 884

Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
            HD+ E++K   L  HSEKLA+ +GLI T  GT++++ KNLR+C DCH   KLISK   R
Sbjct: 885 QHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMER 944

Query: 457 KIMMRDRNRFHHFVNGTCSCGDYW 480
           +I++RD  RFHHF NG CSCGDYW
Sbjct: 945 EIVVRDNKRFHHFKNGFCSCGDYW 968



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 157/383 (40%), Gaps = 79/383 (20%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K SLDK++ V+ +L+D+Y+                               K G +  A+
Sbjct: 316 MKLSLDKEVVVNNALMDMYS-------------------------------KCGCINDAQ 344

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQ 119
           V+F     K+VV WN M+ G++  G  ++   L R+MLA    +  +EVT +  +  C +
Sbjct: 345 VIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFE 404

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
              L + + +H Y      +  N  V  A +  Y+KCGSL  A  VF  +  K V  WN+
Sbjct: 405 ESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNA 464

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA------------------- 220
           +I GY+     + +L  + +M    L P   T   LLSAC+                   
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR 524

Query: 221 ----------------HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
                           H G ++     F+ M+D+  +      +  MVN   + G  E A
Sbjct: 525 LERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVS-----WNTMVNGYLQNGFPERA 579

Query: 265 YKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS--N 319
             L   M    ++P  +   ++ GAC L  ++ LG +   Y + + L     ++  S  +
Sbjct: 580 LSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYAL-KCLLEDNAFIACSVID 638

Query: 320 IYAAIGNWDGVARVRTLMKEKGV 342
           +YA  G+     +V   +KE+ V
Sbjct: 639 MYAKNGSVMESFKVFNGLKERSV 661



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
           T ++T Y+  G    +R +FD + +K++  WN +I  Y+++ L +  L +F +M+ E  +
Sbjct: 121 TRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGL 180

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T   V+ AC  +  ++ G  +H  +  +R ++ +V V  AL++ Y   GS+ DA 
Sbjct: 181 LPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE-DVFVSNALVSFYGTNGSVSDAL 239

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC----RIRLKPSDITFIGLLSAC 219
            VF  + ++++V WNSMI  ++ +G  ++   L  +M      I   P   T   +L  C
Sbjct: 240 RVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVC 299

Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
           A    +  G+   + +  + +++ +V     ++++ S+ G + +A +++  +    + V 
Sbjct: 300 ARDREIGVGKG-VHGLAMKLSLDKEVVVNNALMDMYSKCGCINDA-QVIFKLNNNKNVVS 357

Query: 280 WGTLLGACRLHGNI 293
           W T++G     G+I
Sbjct: 358 WNTMVGGFSAAGDI 371



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           A G+   ++ GR IH  +  S  +  +  + T +I MYS CGS  D+R VFD +  K++ 
Sbjct: 90  ASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLF 149

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234
            WN++I  Y+ +    + L++F +M     L P + TF  ++ ACA    V  G      
Sbjct: 150 QWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGL 209

Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +     +E  V     +V+     G V +A + V  +  E + V W +++
Sbjct: 210 VVKTRLVE-DVFVSNALVSFYGTNGSVSDALR-VFKIMPERNLVSWNSMI 257



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 33/188 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ + +++ S++D+YA+ G V+ + K+F  + +RS+ S   M+  Y   G      
Sbjct: 622 LKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGR----- 676

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                                     A EA+ LF  M      P+E+T + VL+AC   G
Sbjct: 677 --------------------------AKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSG 710

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKD-VVVWNS 179
            +  G      ++    +   ++    +I+M  + G L +A ++  + ++++  V +WN 
Sbjct: 711 LVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNF 770

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 771 LLSSCRIH 778


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/431 (42%), Positives = 284/431 (65%), Gaps = 9/431 (2%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAV 111
           K GE + A+ +  +  +++V+ WN+MI GY ++    EAL   + ML+   ++PN+ +  
Sbjct: 87  KIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKPNKFSFA 146

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           + L+AC ++G L   +W+HS + ++  I++N  + +AL+++Y+KCG ++ +R VF  V  
Sbjct: 147 SSLAACARLGDLHHAKWVHSLMIDA-GIELNAILSSALVDVYAKCGDIETSREVFYSVKR 205

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            DV +WN+MI G+A HG   +A+++F+EM    + P  ITF+GLL+AC+H GL+ +G+ +
Sbjct: 206 NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKGKVY 265

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           F+ M   ++I+PK+EHYG MV+LL RAG+V+EAY+L+  M IEPD V+W +LL + R + 
Sbjct: 266 FDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYK 325

Query: 292 NIALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           N  LGE     +  QNL  A SG YVLLSNIY+    W+   +VR LM ++G++K  G S
Sbjct: 326 NPELGE-----IAIQNLSKAKSGDYVLLSNIYSTTKKWESAQKVRELMTKEGIRKAKGKS 380

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            +E    +H F AGD  H + K IY +LE +    K+EG+V  T +VL D+ E++K+ +L
Sbjct: 381 WVEYGGVIHRFKAGDTSHIEIKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEEEKEENL 440

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEKLA+A+ ++ + PGT I+I KN+R+C DCH   K +SK   R I+MRDR RFH F
Sbjct: 441 NYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRF 500

Query: 470 VNGTCSCGDYW 480
            +G CSC DYW
Sbjct: 501 EDGLCSCKDYW 511



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 8/183 (4%)

Query: 21  ARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR GD+  A+ + + M    +    +  + ++  YAK G++  +R +F  ++  DV  WN
Sbjct: 153 ARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDVSIWN 212

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
            MI G+A HGLA EA+ +F  M AE V P+ +T + +L+AC   G L  G+     +   
Sbjct: 213 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLGKGKVYFDIMSQR 272

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG---YAMHGFGKD 192
            +I+  ++   A++++  + G +K+A  L+     + DVV+W S++     Y     G+ 
Sbjct: 273 FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI 332

Query: 193 ALQ 195
           A+Q
Sbjct: 333 AIQ 335



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKP 207
           +I    K G    A+ V    +D++V+ WN MI GY  +   ++AL+    M     +KP
Sbjct: 81  IIESLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDIKP 140

Query: 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
           +  +F   L+ACA  G ++  +   + M D   IE        +V++ ++ G +E + ++
Sbjct: 141 NKFSFASSLAACARLGDLHHAKWVHSLMIDA-GIELNAILSSALVDVYAKCGDIETSREV 199

Query: 268 VMDMKIEPDSVLWGTLLGACRLHG 291
              +K   D  +W  ++     HG
Sbjct: 200 FYSVK-RNDVSIWNAMITGFATHG 222


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/431 (42%), Positives = 282/431 (65%), Gaps = 9/431 (2%)

Query: 53  KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAV 111
           K GE   A+ +  +  +++V+ WN+MI GY ++    EAL   + ML+   ++PN+ +  
Sbjct: 87  KIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFA 146

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           + L+AC ++G L   +W+HS + +S  I++N  + +AL+++Y+KCG +  +R VF  V  
Sbjct: 147 SSLAACARLGDLHHAKWVHSLMIDS-GIELNAILSSALVDVYAKCGDIGTSREVFYSVKR 205

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
            DV +WN+MI G+A HG   +A+++F+EM    + P  ITF+GLL+ C+H GL+ EG+ +
Sbjct: 206 NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEY 265

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
           F  M   ++I+PK+EHYG MV+LL RAG+V+EAY+L+  M IEPD V+W +LL + R + 
Sbjct: 266 FGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYK 325

Query: 292 NIALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
           N  LGE     +  QNL  A SG YVLLSNIY++   W+   +VR LM ++G++K  G S
Sbjct: 326 NPELGE-----IAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKS 380

Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
            +E    +H F AGD  H ++K IY +LE +    K++G+V  T +VL D+ E++K+ +L
Sbjct: 381 WLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENL 440

Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
             HSEKLA+A+ ++ + PGT I+I KN+R+C DCH   K +SK   R I+MRDR RFH F
Sbjct: 441 NYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRF 500

Query: 470 VNGTCSCGDYW 480
            +G CSC DYW
Sbjct: 501 EDGLCSCRDYW 511


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 271/434 (62%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y + G +  AR +FD M+  D   W  MI    ++    EAL LF RM  E + P 
Sbjct: 17  LLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIPPT 76

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT  +VL+AC   GAL+ G+ IHS ++ S     +V   TAL++MY+KCGSL+ +  VF
Sbjct: 77  SVTLASVLNACACSGALKVGKQIHSRLDAS-GFHSSVLAQTALLDMYAKCGSLECSSKVF 135

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  ++ V W +MI   A HG G +AL+LF EM    +     TFI +L AC+HAGL+ 
Sbjct: 136 TAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIK 195

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           E   FF++M ++YAI P   HY   ++ + RAG++++A +L+  M   P++V W TLL A
Sbjct: 196 ESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNA 255

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CR+H       K+AE L      +S  Y LL N+YAA   +    RVR  M ++G++K P
Sbjct: 256 CRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKKVP 315

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S IE+ NKVHEF+AGD  HP   EI + LE++ G ++  GYVP T+ VLH + E++K+
Sbjct: 316 GKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKE 375

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             + +HSEKLA+AFGLI+T PGT + IVKNLRVC DCHA  K+I+K   R+I++RD +RF
Sbjct: 376 QLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRF 435

Query: 467 HHFVNGTCSCGDYW 480
           HHF +G CSC DYW
Sbjct: 436 HHFEDGQCSCKDYW 449



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 9/178 (5%)

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
           N  +  AL+NMY +CGSL++AR VFD ++  D   W +MI     +    +AL+LF+ M 
Sbjct: 10  NAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMN 69

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              + P+ +T   +L+ACA +G +  G++  + + D       V     ++++ ++ G +
Sbjct: 70  LEGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCGSL 128

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYV 315
           E + K+   M+   +SV W  ++ A   HG    G++  E     NL    A++ T++
Sbjct: 129 ECSSKVFTAMETR-NSVSWTAMIAALAQHGQ---GDEALELFKEMNLEGMVADATTFI 182



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 5/188 (2%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           +L A+    S+++ T +L  YAK G +  +  +F  ME ++ V W  MI   AQHG  +E
Sbjct: 102 RLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDE 161

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTAL 149
           AL LF+ M  E +  +  T + VL AC   G + ES  + HS +E+            AL
Sbjct: 162 ALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRAL 221

Query: 150 INMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
            +   + G L+DA  L+       + V W +++    +H   + A ++   +   +L P 
Sbjct: 222 -DTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLA--KLAPE 278

Query: 209 DITFIGLL 216
           D     LL
Sbjct: 279 DSMAYTLL 286


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 286/436 (65%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++   Y K G ++    L   M  + VV WN +I G AQ+G   E L  +  M      
Sbjct: 233 SSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFR 292

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+++T V+VLSAC ++  L  G+ IH+ +  +    V + V ++LI+MYS+ G L+D+  
Sbjct: 293 PDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSV-LAVVSSLISMYSRSGCLEDSIK 351

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F    + DVV+W+SMI  Y  HG G++AL+LF++M  ++++ +++TF+ LL AC+H+GL
Sbjct: 352 AFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGL 411

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
             +G  +F+ M  +Y ++P++EHY C+V+LL RAG++EEA  ++  M ++PD ++W TLL
Sbjct: 412 KEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLL 471

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            AC+LH    + E+I+E +I  +  ++ +YVLLSNI+A+  NW  V+++R  M+++ V+K
Sbjct: 472 AACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRK 531

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S +EL N VH+F  GD  HP+  EI + L+E+   LK  GYVP+   VLHD+  ++
Sbjct: 532 EPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEE 591

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+ +L  HSEK A+AF L++T     I+++KNLRVC DCH   K IS+   R+I++RD +
Sbjct: 592 KEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDAS 651

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G CSCG+YW
Sbjct: 652 RFHHFKDGECSCGNYW 667



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 157/284 (55%), Gaps = 3/284 (1%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           KD ++S  L++ Y++ G   S+  LF+ MP+R+++S   ++  Y + G++ +A+ LFD+M
Sbjct: 95  KDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEM 154

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
            E+++  WN MI G  Q     +AL LF+ M      P+E T  +VL  C  + +L +G+
Sbjct: 155 SERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQ 214

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H+ +      +++  VG++L +MY K GSL D   +   +  + VV WN++I G A +
Sbjct: 215 EVHACLLKC-GFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQN 273

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++ L  +N M     +P  ITF+ +LSAC+    + +G++    +    A    +  
Sbjct: 274 GCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGA-SSVLAV 332

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
              ++++ SR+G +E++ K  +D +   D VLW +++ A   HG
Sbjct: 333 VSSLISMYSRSGCLEDSIKAFVDRE-NFDVVLWSSMIAAYGFHG 375



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 3/178 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L  ++++++ Y++ G +  +   F D E  DVV W+ MI  Y  HG   EAL LF +M  
Sbjct: 330 LAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMED 389

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
            K+E NEVT +++L AC   G  E G      +     +K  ++  T ++++  + G L+
Sbjct: 390 LKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLE 449

Query: 161 DAR-LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           +A  ++       D ++W +++    +H   + A ++  E+  I+L P D     LLS
Sbjct: 450 EAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEI--IKLDPLDAASYVLLS 505



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 34/205 (16%)

Query: 113 VLSACGQIGALESGRWIHS-----------YIEN-------------------SRNIKVN 142
           +L +C ++G+L  G+ +HS           +I N                   S   + N
Sbjct: 68  LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRN 127

Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
           V     LIN Y + G L+ A+ +FD ++++++  WN+MI G     F K AL LF EM  
Sbjct: 128 VMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG 187

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNT-MKDEYAIEPKVEHYGCMVNLLSRAGQV 261
           +   P + T   +L  CA    +  G+      +K  + +   V     + ++  ++G +
Sbjct: 188 LGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVG--SSLAHMYIKSGSL 245

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGA 286
            +  KL+  M I    V W TL+  
Sbjct: 246 SDGEKLIKSMPIRT-VVAWNTLIAG 269


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/440 (42%), Positives = 272/440 (61%), Gaps = 6/440 (1%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEK- 102
            ++  YA+ G+   AR +F  ++  DVV WN +I G    G   +A  L R M  L E  
Sbjct: 264 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 323

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V PN +T + +L  C  + A   G+ IH Y      +  +V VG+AL++MY+KCG L  +
Sbjct: 324 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALS 382

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAH 221
           R VFDR+  ++ + WN +I+ Y MHG G +A  LF+ M      +P+++TF+  L+AC+H
Sbjct: 383 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 442

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV-LW 280
           +G+V+ G + F+ M+ ++ +EP  +   C+V++L RAG+++EAY +V  M+     V  W
Sbjct: 443 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAW 502

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            T+LGACRLH N+ LGE   E L+      +  YVLL NIY+A G W   A VR+ M+ +
Sbjct: 503 STMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRR 562

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV KEPGCS IE+   +H F+AG+  HP S+E++  +E + G + A GY P T  VLHD+
Sbjct: 563 GVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDM 622

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            +  K   L  HSEKLA+AFGL+   PG +I++ KNLRVC DCH   K +SK  GR+I++
Sbjct: 623 DDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVL 682

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD  RFHHF NG CSCGDYW
Sbjct: 683 RDVRRFHHFRNGQCSCGDYW 702



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 138/290 (47%), Gaps = 39/290 (13%)

Query: 43  SLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           +   +L+ YA+ G VA A+ LF        DVV WN M+    Q G+ +EA+     M+A
Sbjct: 53  AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 112

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             V P+ VT  + L AC ++  L+ GR +H+Y+     +  N  V +AL++MY+    + 
Sbjct: 113 LGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVG 172

Query: 161 DARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLS 217
            AR VFD V D  K + +WN+MI GYA  G  ++AL+LF  M       P + T   +L 
Sbjct: 173 KARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLP 232

Query: 218 ACA-----------HAGLVNE---GRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
           ACA           H  +V     G RF  N + D YA                R G+ +
Sbjct: 233 ACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYA----------------RLGKTD 276

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
            A ++   + + PD V W TL+  C + G++A   ++A  +  Q L   G
Sbjct: 277 VARRIFAMVDL-PDVVSWNTLITGCVVQGHVADAFQLAREM--QQLEEGG 323



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 34/190 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V+ +LD D+ V ++LVD+YA                               K G +A +
Sbjct: 354 AVRHALDTDVAVGSALVDMYA-------------------------------KCGCLALS 382

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQ 119
           R +FD +  ++ + WNV+I  Y  HGL  EA VLF RM A  +  PNEVT +A L+AC  
Sbjct: 383 RAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSH 442

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVW 177
            G ++ G  +   +E    ++    +   ++++  + G L +A  +   +   ++ V  W
Sbjct: 443 SGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAW 502

Query: 178 NSMIVGYAMH 187
           ++M+    +H
Sbjct: 503 STMLGACRLH 512



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
             F  LLS  A  GLV + +R F            V  +  MV++L ++G  +EA + + 
Sbjct: 52  FAFNALLSMYARLGLVADAQRLFAGATPGRG---DVVTWNTMVSVLVQSGMFDEAVQTLY 108

Query: 270 DM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN--LANSGTYVLLSNIYA 322
           DM    + PD V + + L AC     + +G ++  Y+I  +   ANS     L ++YA
Sbjct: 109 DMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYA 166


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/479 (38%), Positives = 292/479 (60%), Gaps = 9/479 (1%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           T+K  +     V  +++ +YA+ GD   A+ +F  MP R+ +S T M+T +++ G++  A
Sbjct: 405 TIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKA 464

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R  FD M E+++V WN M+  Y Q+G + E L L+  M +  V+P+ +T    + AC  +
Sbjct: 465 RGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADL 524

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
             ++ G  + ++      + +NV V  +++ MYS+CG +K+A+  FD ++DKD++ WN+M
Sbjct: 525 AIVKLGMQVVTH-ATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAM 583

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +  +A +G G   +  F +M +   KP+ I+++ +LS C+H GLV EG+ +F++M   + 
Sbjct: 584 LAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFG 643

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
           I P  EH+ CMV+LL RAG +E+A  L+  M  +P++ +W  LLG+CR+H ++ L E  A
Sbjct: 644 ISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAA 703

Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
           + L+  ++  S  YVLLSN+Y+  G  D VA +R LMK KG++   GCS IE+ N+VH F
Sbjct: 704 KKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVF 763

Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
              +  HP+ KE+Y+ LEE+   ++  G     +  +H         S + HSEKLA AF
Sbjct: 764 TVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSVH--------RSKKYHSEKLAFAF 815

Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
           GL++      I ++KNLRVC DCH V KL+S  T R+++MRD  RFHHF +G CSC DY
Sbjct: 816 GLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 8/335 (2%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           +  S+V +Y + GDV  AE +F  + + SL    +M+  Y++      A  +F+ M E+D
Sbjct: 183 IQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERD 242

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
            V WN +I  ++QHG   + L +F  M  +   PN +T  +VLSAC     L+ G  +H+
Sbjct: 243 EVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHA 302

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
            I    +  +++  G  LI+MY+KCG L  A+ VF  + + D + WNS+I G    G G+
Sbjct: 303 RILRMEH-SLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGE 361

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGC 250
           DAL LFN+M R  +   +     +L  C+     + G      T+K        V +   
Sbjct: 362 DALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGN--A 419

Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           ++ + ++ G  ++A  LV  +    +++ W  ++ A    G+I       + +  +N+  
Sbjct: 420 IITMYAKCGDTDKA-DLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIV- 477

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
             T+  + + Y   G  +   ++   M+  GVQ +
Sbjct: 478 --TWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPD 510



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 119/511 (23%), Positives = 197/511 (38%), Gaps = 113/511 (22%)

Query: 19  LYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWN 76
           +Y+  G    A ++F     R++ +  TM+        ++ A  LFD+M    KD V W 
Sbjct: 52  MYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWT 111

Query: 77  VMIDGYAQHGLANEALVLFRRML------AEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            MI GY+Q+G  + +   F  M+       +  +P   T  +V+ ACG +G       +H
Sbjct: 112 TMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFT--SVMKACGSLGDSRLAIQLH 169

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV------------------------- 165
           + + +     +   +  +++ MY KCG +  A  V                         
Sbjct: 170 ALV-SKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGP 228

Query: 166 ------FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
                 F+R+ ++D V WN++I  ++ HGFG   L +F EMC     P+ +T+  +LSAC
Sbjct: 229 YKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSAC 288

Query: 220 AHAGLVNEGRR---------------FFNTMKDEYA-----------IEPKVEH----YG 249
           A    +  G                 F N + D YA            +   EH    + 
Sbjct: 289 ASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWN 348

Query: 250 CMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
            ++  +   G  E+A  L   M+   +  D  +  T+LG C      + GE +  Y I  
Sbjct: 349 SLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS 408

Query: 307 NLANS---GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF-LA 362
            + +S   G  ++   +YA  G+ D    V  LM        P  ++I  +  +  F  +
Sbjct: 409 GMGSSAPVGNAII--TMYAKCGDTDKADLVFRLM--------PLRNTISWTAMITAFSRS 458

Query: 363 GDLRHPKSKEIYMMLEEINGWLKAEGY---VPQTQIVL-HDIGEKQKQNSLEVHSEKLAV 418
           GD+                   KA GY   +P+  IV  + +     QN       KL V
Sbjct: 459 GDIG------------------KARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYV 500

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKL 449
           +      QP   I    ++R C D  A+ KL
Sbjct: 501 SMRSNGVQPDW-ITFTTSIRACADL-AIVKL 529



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           +MYS CG   DA  VF   + +++  WN+MI          DA +LF+EM  +R+K S +
Sbjct: 51  HMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEM-PVRVKDS-V 108

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTM 235
           ++  ++S  +  G  +     F+ M
Sbjct: 109 SWTTMISGYSQNGFHSRSFETFSLM 133


>gi|297728815|ref|NP_001176771.1| Os12g0128300 [Oryza sativa Japonica Group]
 gi|255670010|dbj|BAH95499.1| Os12g0128300 [Oryza sativa Japonica Group]
          Length = 587

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/445 (42%), Positives = 273/445 (61%), Gaps = 28/445 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ---------HGLANEALVLF 95
             +L  +A+ G +A+ R +FD +   D+  WN ++  YA+            A+  L LF
Sbjct: 162 AALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELF 221

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            RML+  +EPNE+T VAV+ ACG++GA+  G W                   AL+ MY+ 
Sbjct: 222 VRMLSLAIEPNEITLVAVIGACGELGAVSHGVW-------------------ALVEMYAG 262

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
           CG L  A  VF   +D+D   +N+M+ G A+HG G+ AL L + M    +    +T + +
Sbjct: 263 CGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSV 322

Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
           + ACAHAGLV+EG  +F+ M+ E+ IEP++EHYGCM+++LSRAG++  A KL+ +M I P
Sbjct: 323 MCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVP 382

Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
           ++ ++ +L+ AC +HG + LGEK+   L+     +SG +VL+SN YA    W+   + R 
Sbjct: 383 NAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARK 442

Query: 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQI 395
            MK  G+ K PG S ++++  +HEFL GD  HP SKEIY M+EEI   L   G    T  
Sbjct: 443 EMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSS 502

Query: 396 VLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTG 455
            L D+ E+ K ++L  HSE+LA+AF LI++ PG  I+I+KNLRVC DCH   KL+S+  G
Sbjct: 503 ALFDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYG 562

Query: 456 RKIMMRDRNRFHHFVNGTCSCGDYW 480
           R+I+MRDR RFHHF +G CSCGD+W
Sbjct: 563 REIVMRDRTRFHHFRDGVCSCGDFW 587


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/436 (42%), Positives = 277/436 (63%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K   +  A  +F  M  K+++ W  +I GY Q+G + EA+ +F  M  + ++
Sbjct: 311 SALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T  +V+S+C  + +LE G   H     S  +   + V  AL+ +Y KCGS++DA  
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHCLALVS-GLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD ++  D V W +++ GYA  G  K+ + LF +M    +KP  +TFIG+LSAC+ AG 
Sbjct: 430 LFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGF 489

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +GR +F++M+ ++ I P  +HY CM++L SR+G+++EA + +  M + PD++ WGTLL
Sbjct: 490 VEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACRL G++ +G+  AE L+  +  N  +YVLL +++AA G W+ VA++R  M+++ V+K
Sbjct: 550 SACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKK 609

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS I+  NKVH F A D  HP SK IY  LE +N  +  EGY P    VLHD+ +  
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTD 669

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K + +  HSEKLA+AFGLI       I+IVKNLRVC DCH   K ISK TGR I++RD  
Sbjct: 670 KVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAV 729

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +G CSCGD+W
Sbjct: 730 RFHKFSDGVCSCGDFW 745



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 192/347 (55%), Gaps = 13/347 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++     + +V + LVD+YA+   V  A++ F  +  +++V   TM+T   +   V  AR
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF+ M ++D + W  M+ G+ Q+GL +EAL +FRRM  + +  ++ T  ++L+ACG + 
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+ IH+YI  +R    NV VG+AL++MYSKC S+K A  VF R+  K+++ W ++I
Sbjct: 287 ALEQGKQIHAYIIRTR-YDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALI 345

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGY  +G  ++A+++F+EM R  + P D T   ++S+CA+   + EG +F        A+
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC-----LAL 400

Query: 242 EPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
              + HY      +V L  + G +E+A++L  +M    D V W  L+      G      
Sbjct: 401 VSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETI 459

Query: 298 KIAEYLISQNLANSG-TYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            + E ++++ +   G T++ +LS    A     G +   ++ K+ G+
Sbjct: 460 DLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGI 506



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 147/346 (42%), Gaps = 54/346 (15%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           Y+   L+  Y + G    A ++F  MP  +L +   +L+  A    ++    LF  M ++
Sbjct: 42  YLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQR 101

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLA--EKVEPNEVTAVAVLSACGQIGALESGRW 128
           D+V +N +I G++  G   +A+ ++  +L     V P+ +T   ++ A   +G    G+ 
Sbjct: 102 DIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQ 161

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
            H  I        N  VG+ L++MY+K   + DA+  FD V+ K+VV++N+MI G     
Sbjct: 162 FHCQILR-LGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGL---- 216

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
                         +R K                 +V E RR F  M D  +I      +
Sbjct: 217 --------------LRCK-----------------MVEEARRLFEVMTDRDSIT-----W 240

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305
             MV   ++ G   EA ++   M+   I  D   +G++L AC     +  G++I  Y+I 
Sbjct: 241 TTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIR 300

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI 351
               +        N++      D  ++ R++   + V +   C +I
Sbjct: 301 TRYDD--------NVFVGSALVDMYSKCRSIKLAETVFRRMTCKNI 338


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 298/474 (62%), Gaps = 15/474 (3%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLT----TMLTCYAKQGEVAAARVLFDDMEE 69
           +S++   A  GD  S  ++     + +L  L      +++ YA+ G +  AR  FD + E
Sbjct: 364 SSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYE 423

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGR 127
           K++V ++  +DG    G +N     ++    E++E   +  T  +++SA   +G L  G+
Sbjct: 424 KNMVSFSGNLDG---DGRSNT----YQDYQIERMELGISTFTFGSLISAAASVGMLTKGQ 476

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H+ +        +  +G +L++MYS+CG L DA  VFD +ND +V+ W SMI G A H
Sbjct: 477 RLHA-LSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKH 535

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G+   AL+LF++M    +KP+D+T+I +LSAC+HAGLV EG+  F  M+  + + P++EH
Sbjct: 536 GYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEH 595

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y CMV+LL R+G VE+A   + +M  + D+++W TLLGAC+ H N+ +GE  A ++I   
Sbjct: 596 YACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLE 655

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +   YVLLSN+YA  G WD VAR+R+LM++K + KE G S + + N +HEF AGD  H
Sbjct: 656 PQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSH 715

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
           P+++EIY  LE +   +K  GYVP T +VLHD+ ++ K+  L  HSEK+AVAFGLIS   
Sbjct: 716 PQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTS 775

Query: 428 GT-SIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            T  I+I KNLRVC DCH+  K +SK TGR+I++RD NRFH   +G CSCG+YW
Sbjct: 776 ATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 128/223 (57%), Gaps = 8/223 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  +AK G++ A R +FD + E+ VV W ++I  YAQ G ++EA+ LF  ML    +P+
Sbjct: 195 LIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPD 254

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC---GSLKDAR 163
           + T  ++LSAC ++G+   G+ +HS +     ++ +  V   L++MY+K     SL +AR
Sbjct: 255 QYTLSSMLSACTELGSFRLGQQLHS-LALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAR 313

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ-LFNEMCRIRLKPSDITFIGLLSACAHA 222
            VF+R+   +V+ W +++ GY   G   + +  LF +M    ++P+ IT+  +L ACA+ 
Sbjct: 314 EVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANL 373

Query: 223 GLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
           G  + GR+   + +K   A    V +   +V++ + +G +EEA
Sbjct: 374 GDQDSGRQIHTHCVKSNLADLNVVGN--ALVSMYAESGSIEEA 414



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 173/348 (49%), Gaps = 47/348 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVA 58
           ++  L+ D  VS  LVD+YA+   G  + +A ++F  MP+ ++++               
Sbjct: 282 LRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMA--------------- 326

Query: 59  AARVLFDDMEEKDVVCWNVMIDGYAQHGLA-NEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
                           W  ++ GY Q G   N+ ++LF +ML E + PN +T  ++L AC
Sbjct: 327 ----------------WTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKAC 370

Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
             +G  +SGR IH++   S    +NV VG AL++MY++ GS+++AR  FD++ +K++V +
Sbjct: 371 ANLGDQDSGRQIHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQLYEKNMVSF 429

Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMK 236
           +       + G G+       ++ R+ L  S  TF  L+SA A  G++ +G+R    ++K
Sbjct: 430 SG-----NLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLK 484

Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
             +  +  + +   +V++ SR G + +A ++  +M  + + + W +++     HG  A  
Sbjct: 485 AGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLAKHGYAARA 541

Query: 297 EKIAEYLISQNL-ANSGTYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            ++   +I+  +  N  TY+ +LS    A    +G    R + K  G+
Sbjct: 542 LELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGL 589



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 150/343 (43%), Gaps = 52/343 (15%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+++  +L     R G +L  + + A           ++LT Y+K   VAAAR +FD M 
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVAN----------SLLTLYSKCSAVAAARSVFDGMP 111

Query: 69  E--KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC--GQIGALE 124
              +D+V W  M    +++G   EAL LF   L E + PN  T  A   AC   ++  L 
Sbjct: 112 VGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA 171

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G  +   +        +V VG ALI+M++K G L   R VFD + ++ VVVW  +I  Y
Sbjct: 172 GGA-VLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRY 230

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT---------- 234
           A  G+  +A++LF +M     +P   T   +LSAC   G    G++  +           
Sbjct: 231 AQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDS 290

Query: 235 -----MKDEYA-------------IEPKVEHYGCM---------VNLLSRAGQVEEAYKL 267
                + D YA             +  ++  +  M         V   S+  QV   +  
Sbjct: 291 CVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCK 350

Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
           +++  I P+ + + ++L AC   G+   G +I  + +  NLA+
Sbjct: 351 MLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLAD 393



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 41/249 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K     D  +  SLV +Y+R G ++ A ++F  M   +++S T+M++  AK G  A  
Sbjct: 482 SLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAA-- 539

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                         AL LF  M+A  V+PN+VT +AVLSAC   
Sbjct: 540 -----------------------------RALELFHDMIAAGVKPNDVTYIAVLSACSHA 570

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK----DVVV 176
           G ++ G+     ++    +   ++    ++++  + G ++DA    D +N+     D +V
Sbjct: 571 GLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDA---LDFINEMPCQVDALV 627

Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGRRFFNTM 235
           W +++     H          N +  I+L+P D     LLS   A AGL ++  R  + M
Sbjct: 628 WKTLLGACKTHNNMDIGEIAANHV--IQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLM 685

Query: 236 KDEYAIEPK 244
           +D+  ++ K
Sbjct: 686 RDKNLMKEK 694


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/461 (43%), Positives = 299/461 (64%), Gaps = 20/461 (4%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           + +V LT +L  +A+ G +A AR +FD +E K+VVCW+ MI GY Q     EAL LFR+M
Sbjct: 308 KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQM 367

Query: 99  LAE------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152
           L E      +V+PN VT V+V++AC ++GA  S   IH Y   +  +  + ++ +ALI+M
Sbjct: 368 LMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVAT-GLDQDARIASALIDM 426

Query: 153 YSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
            +KCG ++  R VF  +++  + VV W+SMI    +HG GK AL+LF+EM     +P++I
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEI 486

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           T+I +LSAC+HAGLV +G+  FN+M+ +Y + P  +HY C+V+LL RAG ++EA+ ++++
Sbjct: 487 TYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILN 546

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
           M I+ D  LWG+LL AC LHGN  LGE + + ++S +  + G +VLL+N+Y   G WD V
Sbjct: 547 MPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDV 606

Query: 331 ARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL-KAEGY 389
            R+R  ++  G++K PG S IE+ N+V+ F+A D  HP+S+ IY  L+ ++  + KA  Y
Sbjct: 607 VRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKAAKY 666

Query: 390 VPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI----------STQPGTSIKIVKNLRV 439
           V +T + + D          + HSE+LA+AFGLI          S +  T I+I KNLRV
Sbjct: 667 VTETGLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRITKNLRV 726

Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           C DCHA  KL+SK   R++++RD +RFHHF +G CSCGDYW
Sbjct: 727 CRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 158/307 (51%), Gaps = 51/307 (16%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK+      ++  S+V +Y+   DV  A ++F  +P                        
Sbjct: 192 VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIP------------------------ 227

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE---KVEPNEVTAVAVLSACG 118
                +E++DVV WN +I G+  +G A  AL  F  M++E    VEPN VT +A+L +C 
Sbjct: 228 -----IEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCA 282

Query: 119 QIGALESGRWIHSYIENSRN---IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
           ++G +E+  W+H YI +  +   +  +V V TAL++M+++CG+L  AR +FD V  K+VV
Sbjct: 283 ELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVV 342

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCR------IRLKPSDITFIGLLSACAHAGLVNEGR 229
            W++MI GY      ++AL+LF +M        + +KP+ +T + +++AC+  G      
Sbjct: 343 CWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSA- 401

Query: 230 RFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL-WGTLL 284
               +M  +YA+   ++        ++++ ++ G +E   ++  +M     +V+ W +++
Sbjct: 402 ----SMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMI 457

Query: 285 GACRLHG 291
           GA  +HG
Sbjct: 458 GAEGIHG 464



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 47/240 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +  L  D + + +LVD Y + G    A ++F  MP+ S+                    
Sbjct: 79  TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV-------------------- 118

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-------AEKVEPNEVTAVAVL 114
                    DVV W  +I  Y+ +G  +EA   F RM        +E    + V+  A++
Sbjct: 119 ---------DVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALV 169

Query: 115 SACGQIG----ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--R 168
           SAC  +G     L  G  +H  +       V+  +G ++++MYS C  +  A  VF+   
Sbjct: 170 SACA-VGCGSNCLRRGSAVHGLVVK-YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIP 227

Query: 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR---IRLKPSDITFIGLLSACAHAGLV 225
           +  +DVV WNS+I G+ ++G  + AL+ F +M       ++P+ +T I LL +CA  G V
Sbjct: 228 IEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCV 287



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 30/189 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V   LD+D  ++++L+D+ A+ GD+    ++F+ M                        
Sbjct: 408 AVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM------------------------ 443

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                D   + VV W+ MI     HG    AL LF  M     EPNE+T ++VLSAC   
Sbjct: 444 -----DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHA 498

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNS 179
           G +E G+   + +E    +    +    L+++  + G L +A  ++ +     D+ +W S
Sbjct: 499 GLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGS 558

Query: 180 MIVGYAMHG 188
           ++    +HG
Sbjct: 559 LLAACHLHG 567



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 132/315 (41%), Gaps = 48/315 (15%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           +  KD   WN +I   A       AL  F RM A  V  N  T  A+L AC  +  L   
Sbjct: 13  ISHKDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPT 71

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGY 184
             +H+Y+     +  +     AL++ Y KCG    A  VFD + +   DVV W ++I  Y
Sbjct: 72  LQVHAYL-TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 185 AMHGFGKDALQLFNEMCRIR------LKPSDITFIG-LLSACAHAGLVNEGRRFFNTMKD 237
           + +G   +A + F  M  +R          D+  +G L+SACA    V  G    N ++ 
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA----VGCGS---NCLRR 183

Query: 238 EYAIEPKVEHYG---------CMVNLLSRAGQVEEAYKLVMDMKIEP-DSVLWGTLLGAC 287
             A+   V  YG          MV++ S    V  A+++   + IE  D V W +L+   
Sbjct: 184 GSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGF 243

Query: 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
            L+G      +  E ++S+     GT  +  N    I           L+K      E G
Sbjct: 244 TLNGEAERALRTFEDMVSE-----GTSAVEPNRVTVI----------ALLKSCA---ELG 285

Query: 348 CSSIELSNKVHEFLA 362
           C  +E S+ VHE+++
Sbjct: 286 C--VETSSWVHEYIS 298


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/436 (41%), Positives = 277/436 (63%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  YAK  +   A  +F D+  +  V W  +I GY Q GL  + L LF  M   K+  
Sbjct: 381 SLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGA 440

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +  T  ++L AC  + +L  G+ +HS I  S  +  NV  G+AL++MY+KCGS+K+A  +
Sbjct: 441 DSATYASILRACANLASLTLGKQLHSRIIRSGCLS-NVFSGSALVDMYAKCGSIKEALQM 499

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +  ++ V WN++I  YA +G G  AL+ F +M    L+P+ ++F+ +L AC+H GLV
Sbjct: 500 FQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLV 559

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG ++FN+M   Y +EP+ EHY  MV++L R+G+ +EA KL+  M  EPD ++W ++L 
Sbjct: 560 EEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILN 619

Query: 286 ACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
           +CR+H N  L  K A+ L + + L ++  YV +SNIYAA G WD V +V+  ++E+G++K
Sbjct: 620 SCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRK 679

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            P  S +E+  K H F A D  HP++KEI   L+E+   ++ +GY P +   LH++ E+ 
Sbjct: 680 VPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEV 739

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  SL+ HSE++A+AF LIST  G+ I ++KNLR C DCHA  K+ISK   R+I +RD +
Sbjct: 740 KVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSS 799

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +G+CSC DYW
Sbjct: 800 RFHHFTDGSCSCKDYW 815



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 147/282 (52%), Gaps = 13/282 (4%)

Query: 17  VDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           V  + + GD+ +A KLF  MP ++++S  TM+  Y K G ++ AR LFD M ++ VV W 
Sbjct: 49  VQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWT 108

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
           ++I GYAQH    EA  LF  M    + P+ +T   +LS   +  ++     +H ++   
Sbjct: 109 MLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHV--- 165

Query: 137 RNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
             +KV     + V  +L++ Y K  SL  A  +F  + +KD V +N+++ GY+  GF  D
Sbjct: 166 --VKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHD 223

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCM 251
           A+ LF +M  +  +PS+ TF  +L+A      +  G++  +  +K  +     V +   +
Sbjct: 224 AINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVAN--AL 281

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           ++  S+  ++ EA KL  +M  E D + +  L+  C  +G +
Sbjct: 282 LDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRV 322



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 22/279 (7%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y+K   +  AR LF +M E D + +NV+I   A +G   E+L LFR +   + +  
Sbjct: 281 LLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRR 340

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +     +LS       LE GR IHS    +  I   V VG +L++MY+KC    +A  +F
Sbjct: 341 QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAIS-EVLVGNSLVDMYAKCDKFGEANRIF 399

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +  +  V W ++I GY   G  +D L+LF EM R ++     T+  +L ACA+   + 
Sbjct: 400 ADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLT 459

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLS---------RAGQVEEAYKLVMDMKIEPDS 277
            G++          +  ++   GC+ N+ S         + G ++EA ++  +M +  +S
Sbjct: 460 LGKQ----------LHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR-NS 508

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYV 315
           V W  L+ A   +G+     +  E +I   L  NS +++
Sbjct: 509 VSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFL 547



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 156/321 (48%), Gaps = 35/321 (10%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +L+   ++L  Y K   +  A  LF  M EKD V +N ++ GY++ G  ++A+ LF +M 
Sbjct: 173 TLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQ 232

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
                P+E T  AVL+A  Q+  +E G+ +HS++    N   NV V  AL++ YSK   +
Sbjct: 233 DLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKC-NFVWNVFVANALLDFYSKHDRI 291

Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
            +AR +F  + + D + +N +I   A +G  +++L+LF E+   R       F  LLS  
Sbjct: 292 VEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIA 351

Query: 220 AHAGLVNEGRRFF---------------NTMKDEYA----------IEPKVEH-----YG 249
           A++  +  GR+                 N++ D YA          I   + H     + 
Sbjct: 352 ANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWT 411

Query: 250 CMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI-S 305
            +++   + G  E+  KL ++M   KI  DS  + ++L AC    ++ LG+++   +I S
Sbjct: 412 ALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRS 471

Query: 306 QNLANSGTYVLLSNIYAAIGN 326
             L+N  +   L ++YA  G+
Sbjct: 472 GCLSNVFSGSALVDMYAKCGS 492



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 5/164 (3%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           ++ S + ++  YAK G +  A  +F +M  ++ V WN +I  YAQ+G    AL  F +M+
Sbjct: 476 NVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMI 535

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
              ++PN V+ +++L AC   G +E G    + +     ++   +   ++++M  + G  
Sbjct: 536 HSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRF 595

Query: 160 KDARLVFDRVN-DKDVVVWNSMIVGYAMHGFG----KDALQLFN 198
            +A  +  R+  + D ++W+S++    +H       K A QLFN
Sbjct: 596 DEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFN 639


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/436 (43%), Positives = 273/436 (62%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  + K G+V +AR +FD ++ ++VV W  ++  Y Q+G   E L L   M  E   
Sbjct: 266 SMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTM 325

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            NE T   +L+A   + AL  G  +H+ +E    IK  V VG ALINMYSKCG +  +  
Sbjct: 326 SNEFTFAVLLNAFAGMAALRHGDLLHARVE-KLGIKNRVIVGNALINMYSKCGCIDSSYD 384

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  + ++D++ WN+MI GY+ HG GK AL LF +M      P+ +TF+G+LSACAH  L
Sbjct: 385 VFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLAL 444

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           VNEG  + N +   + +EP +EHY C+V +L RAG +EEA   +   +++ D V W  LL
Sbjct: 445 VNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLL 504

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            AC +H N  LG KIAE ++  +  + GTY LLSN+YA   +WD V  +R +M+E+ V+K
Sbjct: 505 NACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKK 564

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S IE+ N VH F +    HP+  +IY  ++ +   +K  GYVP  + VLHD+ ++Q
Sbjct: 565 EPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQ 624

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K++ L  HSEKLA+A+GL+       I+++KNLR+C DCH   KLISK T R I++RD +
Sbjct: 625 KESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDAS 684

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +GTC+C D+W
Sbjct: 685 RFHHFRDGTCTCTDHW 700



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 170/353 (48%), Gaps = 26/353 (7%)

Query: 11  YVSTSLVDLYARGGDVLSAEKLFATMPQRSLV----SLTTMLTCYAKQGEVAAARVLFDD 66
           YV T+++   A  G V    +    + +  LV      ++++  Y+K   V  A  + + 
Sbjct: 122 YVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLES 181

Query: 67  ME-----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                  + D  C+N +++   + G   EA+ +  RM+ E V  + VT V+V+  CGQI 
Sbjct: 182 EHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIR 241

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  G  +H+ +     +  +V VG+ L++M+ KCG +  AR VFD + +++VVVW S++
Sbjct: 242 DLGLGLQVHAQLLKG-GLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLM 300

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             Y  +G  ++ L L + M R     ++ TF  LL+A A    +  G    +   ++  I
Sbjct: 301 TAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGI 359

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           + +V     ++N+ S+ G ++ +Y +  DM+   D + W  ++     HG   LG++   
Sbjct: 360 KNRVIVGNALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQHG---LGKQ--A 413

Query: 302 YLISQNLANSG---TYVLLSNIYAAIGNW----DGVARVRTLMKEKGVQKEPG 347
            L+ Q++ ++G    +V    + +A  +     +G   +  LMK   V  EPG
Sbjct: 414 LLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKV--EPG 464



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 135/303 (44%), Gaps = 31/303 (10%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +++ L +++  Y K  ++  AR LFD+M  + VV +NV++ GY   G   E + LF+ M+
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV 113

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
           +   +PNE     VLSAC   G +  G   H ++     +  +  V ++L++MYSKC  +
Sbjct: 114 SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKF-GLVFHHFVKSSLVHMYSKCFHV 172

Query: 160 KDARLVFDRV-----NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214
             A  V +       ND D   +NS++      G   +A+++   M    +    +T++ 
Sbjct: 173 DLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVS 232

Query: 215 LLSACA-----------HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
           ++  C            HA L+  G  F     D +     V+ +G       + G V  
Sbjct: 233 VMGLCGQIRDLGLGLQVHAQLLKGGLTF-----DVFVGSMLVDMFG-------KCGDVLS 280

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ-NLANSGTYVLLSNIYA 322
           A K V D     + V+W +L+ A   +G       +   +  +  ++N  T+ +L N +A
Sbjct: 281 ARK-VFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFA 339

Query: 323 AIG 325
            + 
Sbjct: 340 GMA 342


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/475 (40%), Positives = 279/475 (58%), Gaps = 33/475 (6%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           D  L+V  SLVD+YA+      AE +F ++PQ                            
Sbjct: 383 DSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ---------------------------- 414

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
              +  V W  +I GY Q GL    L LF +M    +  ++ T   VL A     +L  G
Sbjct: 415 ---RTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + +H++I  S N++ NV  G+ L++MY+KCGS+KDA  VF+ + D++ V WN++I  +A 
Sbjct: 472 KQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHAD 530

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           +G G+ A+  F +M    L+P  ++ +G+L+AC+H G V +G  +F  M   Y I PK +
Sbjct: 531 NGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKK 590

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS- 305
           HY CM++LL R G+  EA KL+ +M  EPD ++W ++L ACR+H N +L E+ AE L S 
Sbjct: 591 HYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSM 650

Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
           + L ++  YV +SNIYAA G W+ V  V+  M+E+G++K P  S +E+++K+H F + D 
Sbjct: 651 EKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQ 710

Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
            HP   EI   + E+   ++ EGY P T  V+ D+ E+ K  SL+ HSE+LAVAF LIST
Sbjct: 711 THPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIST 770

Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             G  I ++KNLR C DCHA  KLISK   R+I +RD +RFHHF  G CSCGDYW
Sbjct: 771 PEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D   S  +V+   R G V +A K++  MP ++ VS  TM++ + K G+V++AR
Sbjct: 40  IKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSAR 99

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACGQ 119
            LFD M ++ VV W +++  YA++   +EA  LFR+M        P+ VT   +L  C  
Sbjct: 100 DLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCND 159

Query: 120 IGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
                +   +H++ ++   +    + V   L+  Y +   L  A ++F+ + +KD V +N
Sbjct: 160 AVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFN 219

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           ++I GY   G   +++ LF +M +   +PSD TF G+L A
Sbjct: 220 TLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 10/253 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y+K   V   R+LFD+M E D V +NV+I  Y+Q      +L  FR M     +  
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350

Query: 107 EVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
                 +LS    + +L+ GR +H  + +  + +I   + VG +L++MY+KC   ++A L
Sbjct: 351 NFPFATMLSIAANLSSLQMGRQLHCQALLATADSI---LHVGNSLVDMYAKCEMFEEAEL 407

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +  +  V W ++I GY   G     L+LF +M    L+    TF  +L A A    
Sbjct: 408 IFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           +  G++    +     +E      G +V++ ++ G +++A ++  +M  + ++V W  L+
Sbjct: 468 LLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALI 525

Query: 285 GACRLHGNIALGE 297
            A   H +   GE
Sbjct: 526 SA---HADNGDGE 535



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 145/328 (44%), Gaps = 35/328 (10%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y +   +  A VLF+++ EKD V +N +I GY + GL  E++ LF +M     +P+
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPS 249

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + T   VL A   +     G+ +H+ +  +     +  VG  +++ YSK   + + R++F
Sbjct: 250 DFTFSGVLKAVVGLHDFALGQQLHA-LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLF 308

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + + D V +N +I  Y+     + +L  F EM  +     +  F  +LS  A+   + 
Sbjct: 309 DEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQ 368

Query: 227 EGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLLSR----------AGQV 261
            GR+                 N++ D YA     E    +   L +          +G V
Sbjct: 369 MGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYV 428

Query: 262 EE-----AYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLI-SQNLANSG 312
           ++       KL   M+   +  D   + T+L A     ++ LG+++  ++I S NL N  
Sbjct: 429 QKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           +   L ++YA  G+     +V   M ++
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMPDR 516


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 283/436 (64%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  YAK GE+  AR LFD+M E++VV W+ MI GYAQ     EAL LF++ L E V+
Sbjct: 165 SSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVD 224

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N+ T  +V+  C     LE G+ IH       +   +  VG+ALI++YSKCG ++ A  
Sbjct: 225 VNDFTFSSVIRVCSSSTFLELGKLIHGLCLK-MSFDSSSFVGSALISLYSKCGVIEGAYQ 283

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +++ +WNSM++  A H   +    LF EM  + +KP+ I+F+ +L AC+HAGL
Sbjct: 284 VFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGL 343

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +GR +F+ M+D Y IEP+ EHY  +V+LL RAG+++EA  ++  M + P   +WG LL
Sbjct: 344 VEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALL 402

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
             CR+H +  +   +A+ ++  + ++SG +VLLSN YAA G ++  AR+R +++++GV+K
Sbjct: 403 TGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKK 462

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E G S +E  NKVH F AGD  H K  EIY  LEE+   ++  GYV  T  VL  +  ++
Sbjct: 463 ETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEE 522

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  ++  HSE+LA+AFGLI+  PG  I+++KNLRVC DCHA  K +SK  GR +++RD N
Sbjct: 523 KNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNN 582

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +G CSCGDYW
Sbjct: 583 RFHRFEDGKCSCGDYW 598



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 14/305 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K      +  +FD+  +K    W+ +I  +AQ+     AL  FRRML + V P+
Sbjct: 66  LINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPD 125

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +    +   ACG +   + G+ +H  +        +V VG++L++MY+KCG + DAR +F
Sbjct: 126 DHIYPSATKACGFLRRSDVGKSVHC-LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLF 184

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + +++VV W+ MI GYA    G +AL LF +     +  +D TF  ++  C+ +  + 
Sbjct: 185 DEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLE 244

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G +  + +  + + +        +++L S+ G +E AY+ V D     +  LW ++L A
Sbjct: 245 LG-KLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQ-VFDEIPTRNLGLWNSMLIA 302

Query: 287 CRLHGN----IALGEKIAEYLISQNLANSGTYVLLSNIYAA--IGNWDGVARVRTLMKEK 340
           C  H +      L E++    +  N  +      LS +YA    G  +      +LM++ 
Sbjct: 303 CAQHAHTQRVFGLFEEMGNVGMKPNFIS-----FLSVLYACSHAGLVEKGREYFSLMRDY 357

Query: 341 GVQKE 345
           G++ E
Sbjct: 358 GIEPE 362



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 34/237 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K S D   +V ++L+ LY++ G +  A ++F  +P R+L                    
Sbjct: 254 LKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNL-------------------- 293

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        WN M+   AQH        LF  M    ++PN ++ ++VL AC   G
Sbjct: 294 -----------GLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAG 342

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV-VVWNSM 180
            +E GR   S + +   I+   +   +L+++  + G L++A  V  ++  +    VW ++
Sbjct: 343 LVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGAL 401

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           + G  +H   + A  + + +  +    S +  + L +A A AG   E  R    ++D
Sbjct: 402 LTGCRIHKDTEMAAFVADRILEMDSSSSGLHVL-LSNAYAAAGRYEEAARMRKMLRD 457


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/442 (42%), Positives = 283/442 (64%), Gaps = 3/442 (0%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
           +LV  +++   Y K G +     +   M  ++VV WN +I G AQ+G     L L+  M 
Sbjct: 123 NLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMK 182

Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHS-YIENSRNIKVNVQVGTALINMYSKCGS 158
              + P+++T V+V+S+  ++  L  G+ IH+  I+   N  V V   ++LI+MYSKCG 
Sbjct: 183 MSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVL--SSLISMYSKCGC 240

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L+D+          D V+W+SMI  Y  HG G++A+ LF +M +  L  +D+TF+ LL A
Sbjct: 241 LEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYA 300

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H GL  +G  FF  M ++Y ++P++EHY C+V+LL R+G ++EA  ++  M +E D V
Sbjct: 301 CSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVV 360

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
           +W TLL ACR+H N  +  + AE ++  N  +S TYVLLSNI+A+   W  V++VRT M+
Sbjct: 361 IWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMR 420

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
           ++ V+KEPG S +E+ N+V +F  GD  HP S+EI + L+E+   +K  GYVP T  V H
Sbjct: 421 DRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFH 480

Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
           D   ++K+NSL  HSEKLA+AFGL++  PG+ I+++KNLR+C DCH   KLIS    R+I
Sbjct: 481 DTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREI 540

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RD +RFHHF +G CSCGDYW
Sbjct: 541 IVRDTSRFHHFKHGKCSCGDYW 562



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 164/324 (50%), Gaps = 13/324 (4%)

Query: 19  LYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78
           +Y + G++  A   F  MP R+++S   ++  + + G++ +A  +FD+M E++V  WN M
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 79  IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138
           + G  Q       L LFR M      P+E T  +VL  C  + A  +G+ +H+Y+     
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLK-YG 119

Query: 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198
            + N+ VG++L +MY K GSL +   V   +  ++VV WN++I G A +G  +  L L+N
Sbjct: 120 YEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYN 179

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
            M    L+P  IT + ++S+ A    + +G++  +    +      V     ++++ S+ 
Sbjct: 180 MMKMSGLRPDKITLVSVISSSAELATLFQGQQ-IHAEAIKAGANSAVAVLSSLISMYSKC 238

Query: 259 GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318
           G +E++ K ++D +  PDSVLW +++ A   HG       + E +  + L  +     LS
Sbjct: 239 GCLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDV-TFLS 296

Query: 319 NIYAAIGNWDGVARVRTLMKEKGV 342
            +YA   N          +KEKG+
Sbjct: 297 LLYACSHNG---------LKEKGM 311


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/483 (43%), Positives = 295/483 (61%), Gaps = 48/483 (9%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   D D+Y++ SLV  YA                           TC      +  A+
Sbjct: 155 LKLGFDSDVYINNSLVHFYA---------------------------TC----DRLDFAK 183

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +FD M E+ +V WNV+ID + + G  + AL LF  M  +  EP+  T  ++ +AC  +G
Sbjct: 184 GVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEM-QKFFEPDGYTIQSIANACAGMG 242

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           +L  G            I  +V + T+L++MY KCGSL+ A  +F R+  +DV  WNSMI
Sbjct: 243 SLSLG------------IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMI 290

Query: 182 VGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           +G++ HG    AL+ F  M R  +L P+ ITF+G+LSAC H GLV+EGRR+F+ M  EY 
Sbjct: 291 LGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYK 350

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA-CRLHGNIALGEKI 299
           I+P++EHYGC+V+LL+RAG ++EA  +V +M + PD V+W +LL A C+ +  + L E++
Sbjct: 351 IKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEM 410

Query: 300 AEYLI-SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
           A  ++ ++    SG YVLLS +YA+   W+ V  VR LM +KGV KEPGCSSIE+    H
Sbjct: 411 ARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAH 470

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QTQIVLHDIGEKQKQNSLEVHSEKLA 417
           EF AGD  HP+++EIY  L+ I   ++  GY P  +Q  + D     KQ SL +HSE+LA
Sbjct: 471 EFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLA 530

Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
           +AFGL+ T+PG  I+I KNLRVC +CH V KLIS+   R+I++RDR RFHHF +G CSC 
Sbjct: 531 IAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCM 590

Query: 478 DYW 480
           DYW
Sbjct: 591 DYW 593



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 32/285 (11%)

Query: 63  LFDDMEEKDVVCWNVMIDGYAQH-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
           +F  +E  +   WN +I   A+       A+ L+ RML +  V  ++ T   VL AC  +
Sbjct: 82  VFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYL 141

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            AL  G  IH+ I        +V +  +L++ Y+ C  L  A+ VFDR++++ +V WN +
Sbjct: 142 FALSEGEQIHAQILK-LGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVV 200

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG---RRFFNT-MK 236
           I  +   G    AL LF EM +   +P   T   + +ACA  G ++ G       NT + 
Sbjct: 201 IDAFVRFGEFDAALNLFGEMQKF-FEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLV 259

Query: 237 DEY----AIE---------PK--VEHYGCMVNLLSRAGQVEEAYK----LVMDMKIEPDS 277
           D Y    ++E         PK  V  +  M+   S  G+V  A +    +V   K+ P++
Sbjct: 260 DMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNA 319

Query: 278 VLWGTLLGACRLHGNIALGEK-----IAEYLISQNLANSGTYVLL 317
           + +  +L AC   G ++ G +     + EY I   L + G  V L
Sbjct: 320 ITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDL 364



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 34/203 (16%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++   +  D+ ++TSLVD+Y + G +  A +LF  MP+R + S  +M+  ++  GEVAAA
Sbjct: 243 SLSLGIVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAA 302

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              F  M                              +  EK+ PN +T V VLSAC   
Sbjct: 303 LEYFGCM------------------------------VRTEKLMPNAITFVGVLSACNHG 332

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNS 179
           G +  GR     +     IK  ++    L+++ ++ G + +A  V   +  + D+V+W S
Sbjct: 333 GLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRS 392

Query: 180 MIVGYAMHGFGKDALQLFNEMCR 202
           ++        G   ++L  EM R
Sbjct: 393 LLDACCKQNAG---VELSEEMAR 412


>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
 gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
          Length = 517

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/436 (42%), Positives = 274/436 (62%), Gaps = 2/436 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
            ++  YAK   + AAR +FD+M  +DVV W  ++ G A+ G    A+  +R M+A  V  
Sbjct: 83  ALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDMVAAGVAT 142

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +E    AVLS+C    ALE GR +H+    S + +  + VG +L++MY+K GSL+DAR V
Sbjct: 143 DEFAVAAVLSSCAGSTALELGRSVHAAAVRSGH-EPFLSVGNSLVSMYAKTGSLRDARTV 201

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD +  +  + W ++IVGYA +G G+++L ++ +M R   +P  +TF+GLL AC+HAGL+
Sbjct: 202 FDAMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLL 261

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV-MDMKIEPDSVLWGTLL 284
           + GR  F +M+ E+ I P  +HY CMV+LL RAG++ EA  L+      E D+ +W  LL
Sbjct: 262 DAGRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALL 321

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACR H N AL E+ A  +   +  ++  YV+LSN+Y+    W  VARVR LM+ +G+ K
Sbjct: 322 AACRTHRNAALAERAAGMVWRLDPTDAMPYVMLSNLYSRARRWGDVARVRALMRSRGISK 381

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS + ++   H F AGD  H ++ EIY   EE+   ++A G+VP T+  L D   + 
Sbjct: 382 EPGCSWVVVAGVTHVFHAGDRDHQRAAEIYRKAEEMAARIRARGHVPDTEWALQDEAPEG 441

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           ++  L  H E+LAVAFGL++      I++ KNLRVC DCHA  K++++  GR+I++RD N
Sbjct: 442 REMGLAHHGERLAVAFGLLAVPAAAPIRVYKNLRVCGDCHAAIKMVAEVYGREIILRDSN 501

Query: 465 RFHHFVNGTCSCGDYW 480
            FHH  +G+CSCGDYW
Sbjct: 502 CFHHMKDGSCSCGDYW 517



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
           K +V  N  I   ++ GL   AL LF  M A  +  +E T   +L++   + A  +    
Sbjct: 7   KGLVACNAAISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNSAALLRAPPAA--A 64

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGF 189
              +     +  ++ V  AL++ Y+K   L  AR VFD +  +DVV W S++ G A  G 
Sbjct: 65  LHALLLRAGLASHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGS 124

Query: 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG 249
              A++ + +M    +   +     +LS+CA +  +  GR   +        EP +    
Sbjct: 125 HGLAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELGRS-VHAAAVRSGHEPFLSVGN 183

Query: 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
            +V++ ++ G + +A + V D      ++ W  L+     +G     E +A Y    ++A
Sbjct: 184 SLVSMYAKTGSLRDA-RTVFDAMRSRCAITWTALIVGYAQNGRGR--ESLAVY---ADMA 237

Query: 310 NSG------TYVLLSNIYAAIGNWD-GVARVRTLMKEKGVQKEP 346
            SG      T+V L    +  G  D G A  +++  E G+   P
Sbjct: 238 RSGCRPDYVTFVGLLFACSHAGLLDAGRAHFQSMQSEHGISPGP 281



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 33/180 (18%)

Query: 10  LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
           L V  SLV +YA+ G +  A  +F  M  R  ++ T ++                     
Sbjct: 179 LSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIV-------------------- 218

Query: 70  KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
                      GYAQ+G   E+L ++  M      P+ VT V +L AC   G L++GR  
Sbjct: 219 -----------GYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDAGRAH 267

Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--VNDKDVVVWNSMIVGYAMH 187
              +++   I         ++++  + G L +A  + DR    + D  VW +++     H
Sbjct: 268 FQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLAACRTH 327


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 289/441 (65%), Gaps = 8/441 (1%)

Query: 45  TTMLTCYAKQGEV--AAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           T ++  YA  G +  AAA      ME++ DVV WN +I   +QHG    AL  FRRM   
Sbjct: 466 TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLH 525

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V PN++T VAVL AC    AL  G  +H ++ +S  ++ N+ V TAL +MY +CGSL+ 
Sbjct: 526 GVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHS-GMESNLFVATALASMYGRCGSLES 584

Query: 162 ARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           AR +F++V  ++DVV++N+MI  Y+ +G   +AL+LF  M +   +P + +F+ +LSAC+
Sbjct: 585 AREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACS 644

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GL +EG   F +M+  Y I P  +HY C V++L RAG + +A +L+  M ++P  ++W
Sbjct: 645 HGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVW 704

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQ-NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
            TLLGACR + ++  G ++A  ++ + +  +   YV+LSNI A  G WD  A VRT M+ 
Sbjct: 705 KTLLGACRKYRDVDRG-RLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMES 763

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           +G++KE G S IE+ ++VHEF+AGD  HP+S+EIY  LE ++  ++  GYVP T++VL  
Sbjct: 764 RGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRK 823

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + E +K+  L  HSE+LA+A G++S+   T ++++KNLRVC DCH   K ISK   ++I+
Sbjct: 824 VDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIV 882

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD +RFHHFV+G+CSCGDYW
Sbjct: 883 VRDTHRFHHFVDGSCSCGDYW 903



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 141/262 (53%), Gaps = 14/262 (5%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +++LV  T + + YA+ G +  A+ +FD   E+DVV WN M+  YAQHG  +EA +LF R
Sbjct: 257 EQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFAR 316

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML E + P++VT V   + C    +L  GR IH      + +  ++ +G AL++MY++CG
Sbjct: 317 MLHEGISPSKVTLVNASTGC---SSLRFGRMIHG-CALEKGLDRDIVLGNALLDMYTRCG 372

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S ++AR +F R+   + V WN+MI G +  G  K A++LF  M    + P   T++ LL 
Sbjct: 373 SPEEARHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLE 431

Query: 218 ACA----HAGLVNEGRRFFNTMKD-EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           A A     A  + EGR+  + +    YA EP +     +V + +  G ++EA        
Sbjct: 432 AVASNPEEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGA 489

Query: 273 IEP--DSVLWGTLLGACRLHGN 292
           +E   D V W  ++ +   HG+
Sbjct: 490 MEDRHDVVSWNAIISSLSQHGH 511



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 133/277 (48%), Gaps = 15/277 (5%)

Query: 21  ARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR GD+     + A + +  L    V    +L  Y   G VA+A +LF+ ME +D+V WN
Sbjct: 139 ARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWN 197

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
             I   AQ G    AL LF+RM  E V P  +T V  L+ C  I   ++   IH +I   
Sbjct: 198 AAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQA---IH-FIVRE 253

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             ++  + V TAL + Y++ G L  A+ VFDR  ++DVV WN+M+  YA HG   +A  L
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F  M    + PS +T +   + C+         R  +    E  ++  +     ++++ +
Sbjct: 314 FARMLHEGISPSKVTLVNASTGCSSLRF----GRMIHGCALEKGLDRDIVLGNALLDMYT 369

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           R G  EEA  L    +I  ++V W T++      G +
Sbjct: 370 RCGSPEEARHLF--KRIPCNAVSWNTMIAGSSQKGQM 404



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 7/248 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y K   +     +F  +E +D   W  +I  Y +HG A  A+ +F RM  E V  +
Sbjct: 68  LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCD 127

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT +AVL AC ++G L  GR IH++I  S  +K    +   L+++Y  CG +  A L+F
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVES-GLKGKSVLANLLLHIYGSCGCVASAMLLF 186

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +++ ++D+V WN+ I   A  G    AL+LF  M    ++P+ IT +  L+ CA    + 
Sbjct: 187 EKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIR 242

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           + +     ++ E  +E  +     + +  +R G + +A K V D   E D V W  +LGA
Sbjct: 243 QAQAIHFIVR-ESGLEQTLVVSTALASAYARLGHLYQA-KEVFDRAAERDVVSWNAMLGA 300

Query: 287 CRLHGNIA 294
              HG+++
Sbjct: 301 YAQHGHMS 308



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 75/354 (21%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L++ L VST+L   YAR G +  A+++F    +R +VS   ML  YA+ G ++ A +LF 
Sbjct: 256 LEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFA 315

Query: 66  DM------------------------------------EEKDVVCWNVMID--------- 80
            M                                     ++D+V  N ++D         
Sbjct: 316 RMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPE 375

Query: 81  ---------------------GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG- 118
                                G +Q G    A+ LF+RM  E + P   T + +L A   
Sbjct: 376 EARHLFKRIPCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVAS 435

Query: 119 ---QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--VNDK- 172
              +  A+  GR +HS I  S        +GTA++ MY+ CG++ +A   F R  + D+ 
Sbjct: 436 NPEEARAMAEGRKLHSRI-VSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRH 494

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           DVV WN++I   + HG GK AL  F  M    + P+ IT + +L ACA A  + EG    
Sbjct: 495 DVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVH 554

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           + ++    +E  +     + ++  R G +E A ++   + +E D V++  ++ A
Sbjct: 555 DHLRHS-GMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 14/190 (7%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V +L A G    L  GR IH+ I +   + +  ++G  L+ +Y KC SL D   VF R+ 
Sbjct: 33  VRLLRAAGDDRLLSQGRRIHARIVS---LGLEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +D   W ++I  Y  HG  K A+ +F+ M +  ++   +TF+ +L ACA  G +++GR 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                   + +E  ++    + NLL       G V  A  +++  K+E D V W   + A
Sbjct: 150 IH-----AWIVESGLKGKSVLANLLLHIYGSCGCVASA--MLLFEKMERDLVSWNAAIAA 202

Query: 287 CRLHGNIALG 296
               G++ + 
Sbjct: 203 NAQSGDLGIA 212



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 35/214 (16%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMP-QRSLVSLTTMLTCYAKQGEVAAARVLF 64
           ++ +L+V+T+L  +Y R G + SA ++F  +  +R +V    M+  Y             
Sbjct: 562 MESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAY------------- 608

Query: 65  DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
                             +Q+GLA EAL LF RM  E   P+E + V+VLSAC   G  +
Sbjct: 609 ------------------SQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLAD 650

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVG 183
            G  I   +  S  I  +       +++  + G L DA  +   ++ K  V+VW +++ G
Sbjct: 651 EGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLL-G 709

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
                   D  +L N M R  L P D +   +LS
Sbjct: 710 ACRKYRDVDRGRLANSMVR-ELDPGDESAYVVLS 742


>gi|222630733|gb|EEE62865.1| hypothetical protein OsJ_17668 [Oryza sativa Japonica Group]
          Length = 620

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/421 (47%), Positives = 271/421 (64%), Gaps = 14/421 (3%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRM------LAEKVEPNEVTAVAVLSACGQI 120
           M  +DV  WN ++ G AQ    N AL LF R+      L  + EPNEVT VA LSAC QI
Sbjct: 1   MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQI 60

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--DKDVVVWN 178
           G L+ G ++H + +    +  NV+V  +LI+MYSKCGSL  A  VF  +   D+ +V +N
Sbjct: 61  GLLKDGMYVHEFAKRF-GLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYN 119

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
           + I  ++MHG G DAL+LF+EM   R++P  +T++ +L  C H+GLV++G R FN+M+  
Sbjct: 120 AAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR-- 176

Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
             + P ++HYG +V+LL RAG++ EAY  V+ M    D VLW TLLGA ++HG + L E 
Sbjct: 177 --VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAEL 234

Query: 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVH 358
            A  L        G YVLLSN+YA+   W  V RVR  M+   V+K PG S  E+   +H
Sbjct: 235 AANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMH 294

Query: 359 EFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAV 418
           +F+ GD  HP+ +EIY  LE+I   +   GY P+T  VLHDIGE++KQ +L  HSEKLA+
Sbjct: 295 KFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAI 354

Query: 419 AFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478
           AFGLI+T PG +++++KNLR+C DCH V KLISK  GR I++RDR RFH F +G CSC D
Sbjct: 355 AFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRD 414

Query: 479 Y 479
           Y
Sbjct: 415 Y 415



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 35/187 (18%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +F LD+++ V  SL+D+Y++ G +  A  +F ++                          
Sbjct: 75  RFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKP------------------------ 110

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                E++ +V +N  I  ++ HG   +AL LF  M   ++EP+ VT +AVL  C   G 
Sbjct: 111 -----EDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSGL 164

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMI 181
           ++ G  +     NS  +  N++    ++++  + G L +A   V       D+V+W +++
Sbjct: 165 VDDGLRVF----NSMRVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLL 220

Query: 182 VGYAMHG 188
               MHG
Sbjct: 221 GAAKMHG 227


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 282/436 (64%), Gaps = 2/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           ++++  YAK GE+  AR LFD+M E++VV W+ MI GYAQ     EAL LF++ L E V+
Sbjct: 165 SSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVD 224

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N+ T  +V+  C     LE G+ IH       +   +  VG+ALI++YSKCG ++ A  
Sbjct: 225 VNDFTFSSVIRVCSSSTFLELGKLIHGLCLK-MSFDSSSFVGSALISLYSKCGVIEGAYQ 283

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VFD +  +++ +WNSM++  A H   +    LF EM  + +KP+ I F+ +L AC+HAGL
Sbjct: 284 VFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGL 343

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +GR +F+ M+D Y IEP+ EHY  +V+LL RAG+++EA  ++  M + P   +WG LL
Sbjct: 344 VEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALL 402

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
             CR+H +  +   +A+ ++  + ++SG +VLLSN YAA G ++  AR+R +++++GV+K
Sbjct: 403 TGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKK 462

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           E G S +E  NKVH F AGD  H K  EIY  LEE+   ++  GYV  T  VL  +  ++
Sbjct: 463 ETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEE 522

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K  ++  HSE+LA+AFGLI+  PG  I+++KNLRVC DCHA  K +SK  GR +++RD N
Sbjct: 523 KNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNN 582

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +G CSCGDYW
Sbjct: 583 RFHRFEDGKCSCGDYW 598



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 150/302 (49%), Gaps = 8/302 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K      +  +FD+  +K    W+ +I  +AQ+     AL  FRRML + V P+
Sbjct: 66  LINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPD 125

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           +    +   ACG +   + G+ +H  +        +V VG++L++MY+KCG + DAR +F
Sbjct: 126 DHIYPSATKACGFLRRSDVGKSVHC-LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLF 184

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D + +++VV W+ MI GYA    G +AL LF +     +  +D TF  ++  C+ +  + 
Sbjct: 185 DEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLE 244

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G +  + +  + + +        +++L S+ G +E AY+ V D     +  LW ++L A
Sbjct: 245 LG-KLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQ-VFDEIPTRNLGLWNSMLIA 302

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR---TLMKEKGVQ 343
           C  H +      + E +   N+     ++   ++  A  +   V + R   +LM++ G++
Sbjct: 303 CAQHAHTQRVFGLFEEM--GNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIE 360

Query: 344 KE 345
            E
Sbjct: 361 PE 362



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K S D   +V ++L+ LY++ G +  A ++F  +P R+L                    
Sbjct: 254 LKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNL-------------------- 293

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        WN M+   AQH        LF  M    ++PN +  ++VL AC   G
Sbjct: 294 -----------GLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAG 342

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV-VVWNSM 180
            +E GR   S + +   I+   +   +L+++  + G L++A  V  ++  +    VW ++
Sbjct: 343 LVEKGREYFSLMRD-YGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGAL 401

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
           + G  +H   + A  + + +  +    S +  + L +A A AG   E  R    ++D
Sbjct: 402 LTGCRIHKDTEMAAFVADRILEMDSSSSGLHVL-LSNAYAAAGRYEEAARMRKMLRD 457


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 280/434 (64%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T YA   ++  +  +F      +VV W  ++ GY  +    +AL +F  M+ E V PN
Sbjct: 228 LITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPN 287

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + +  + L++C  + AL+ GR IH+       ++ +V VG +LI MY +CG+L D  ++F
Sbjct: 288 QSSFTSALNSCCGLEALDWGREIHT-AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF 346

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            R++ K++V WNS+IVG A HG G  AL  FN+M R  ++P +ITF GLLSAC+H+G+  
Sbjct: 347 KRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 406

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +GR  F    +  + E K++HY CMV++L R+G++EEA +L+ +M ++ +S++W  LL A
Sbjct: 407 KGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 466

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H  + + E+ A+ +I      S  YVLLSN+YA+   W  V+R+R  MK++G+ K+P
Sbjct: 467 CTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQP 526

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S I +    +EFL+GD  HP S  IY  LE + G LK  GYVP  +  LHD+ ++QK+
Sbjct: 527 GRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKE 586

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LA+ FGLIST  G++I ++KNLRVC DCH+  KLI+K   RKI++RD  RF
Sbjct: 587 VMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRF 646

Query: 467 HHFVNGTCSCGDYW 480
           HHF++G CSCGDYW
Sbjct: 647 HHFMDGRCSCGDYW 660



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T++++ + + G +  AE LF  MP R + +  +M+  Y   G V     LF +M  ++V+
Sbjct: 92  TTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVI 151

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHS 131
            W  MI G  QHG + EAL LFR+M+   VE  P   T   V++AC    AL  G  IH+
Sbjct: 152 SWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHA 211

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           ++        +  +  ALI  Y+ C  ++D+  VF      +VV+W +++ GY ++   +
Sbjct: 212 HV-FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHE 270

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           DAL++F EM R  + P+  +F   L++C     ++ GR   +T   +  +E  V     +
Sbjct: 271 DALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGLETDVFVGNSL 329

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVL-WGTLLGACRLHG 291
           + +  R G + +   +V+  +I   +++ W +++  C  HG
Sbjct: 330 IVMYYRCGNLNDG--VVIFKRISKKNIVSWNSVIVGCAQHG 368



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 46/279 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+Y+ T ++  YAR      A +LF  MP + +VS  +M+       ++  AR LFD+M 
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMP 84

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+ VV W  MI+G+ Q G    A  LF +M                              
Sbjct: 85  ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR--------------------------- 117

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
                        ++    ++I  Y   G ++D   +F  +  ++V+ W SMI G   HG
Sbjct: 118 -------------DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHG 164

Query: 189 FGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKV 245
             ++AL LF +M  C + +KP+  T+  +++ACA+A  + +G +   +  K  Y+ +  +
Sbjct: 165 RSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYI 224

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                ++   +   Q+E++ + V   K+  + V+W  L+
Sbjct: 225 S--AALITFYANCKQMEDSLR-VFHGKLHMNVVIWTALV 260



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 1/143 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y + G +    V+F  + +K++V WN +I G AQHG    AL  F +M+   VEP
Sbjct: 328 SLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEP 387

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RL 164
           +E+T   +LSAC   G  + GR +  Y   +++ +V +     ++++  + G L++A  L
Sbjct: 388 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 447

Query: 165 VFDRVNDKDVVVWNSMIVGYAMH 187
           + +     + +VW  ++    MH
Sbjct: 448 IRNMPVKANSMVWLVLLSACTMH 470



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFIGLL 216
           + +AR VFD+V+  DV ++  MI GYA +     ALQLF EM      P    +++  ++
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM------PVKDVVSWNSMI 64

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
             C     +   R+ F+ M      E  V  +  M+N   + G++E A  L   M    D
Sbjct: 65  KGCFDCADLTMARKLFDEMP-----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR-D 118

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
              W +++     +G +  G ++ + +  +N+
Sbjct: 119 IAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNV 150


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 281/435 (64%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G    A  LF +++ KD + WN +I G+ Q  L  +AL++F +M     + 
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKY 546

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T ++ +SA   +  ++ G+ +H     + +     +V  ALI++Y KCGS++DA+++
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGSIEDAKMI 605

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  ++ ++ V WN++I   + HG G +AL LF++M +  LKP+D+TFIG+L+AC+H GLV
Sbjct: 606 FSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 665

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG  +F +M + Y + P  +HY C+V++L RAGQ++ A + V +M I  ++++W TLL 
Sbjct: 666 EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC++H NI +GE  A++L+     +S +YVLLSN YA  G W    +VR +MK++G++KE
Sbjct: 726 ACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IE+ N VH F  GD  HP S +IY  L E+N  L   GY  +   + H+  ++QK
Sbjct: 786 PGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQK 845

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             +  VHSEKLAVAFGL++  P   ++++KNLRVC DCH+  K  S+ T R+I++RD  R
Sbjct: 846 DPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYR 905

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G+CSCGDYW
Sbjct: 906 FHHFNSGSCSCGDYW 920



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 36/292 (12%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K   + D+YVS  L+D+Y++                           C  K      A
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSK-------------------------YRCLDK------A 400

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R + + +E++DVV W  MI GY QH    EAL  F+ M    V P+ +   +  SAC  I
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A+  G  IH+ +  S     ++ +   L+N+Y++CG  ++A  +F  ++ KD + WN +
Sbjct: 461 KAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGL 519

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEY 239
           I G+      + AL +F +M +   K +  TFI  +SA A+   + +G++     +K  +
Sbjct: 520 ISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGH 579

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             E +V +   +++L  + G +E+A  +  +M +  + V W T++ +C  HG
Sbjct: 580 TSETEVAN--ALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 142/293 (48%), Gaps = 12/293 (4%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
           L  D     SL+   A  GD+   ++L + + +  +    ++  ++L  Y K G++  A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+  +  +VV WN+M+  Y Q     ++  +F +M A  + PN+ T   +L  C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +E G  IHS +      + ++ V   LI+MYSK   L  AR + + +  +DVV W SMI
Sbjct: 361 QIELGEQIHS-LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMI 419

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYA 240
            GY  H F ++AL  F EM    + P +I      SACA    + +G +    +    YA
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYA 479

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL---GACRLH 290
            +  +  +  +VNL +R G+ EEA+ L  ++    D + W  L+   G  RL+
Sbjct: 480 ADISI--WNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLISGFGQSRLY 529



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 13/245 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V  AR +F ++  +D V W  M+ GYAQ GL  EA  L+ +M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                +VLSAC +      GR IH+ +   +       VG ALI +Y   GS K A  VF
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYK-QAFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +   D V +N++I G+A  G G+ ALQ+F+EM    L+P  +T   LL+ACA  G + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 227 EGRRFFNT-----MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
           +G++  +      M  +Y  E      G +++L  + G +E A+  + ++    + VLW 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITE------GSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWN 315

Query: 282 TLLGA 286
            +L A
Sbjct: 316 LMLVA 320



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 33/206 (16%)

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           R +  +  +G  LI++Y+K G +  AR VF  ++ +D V W +M+ GYA  G GK+A +L
Sbjct: 72  RGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRL 131

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEH-------- 247
           +++M    + P+      +LSAC    L  +GR       K  +  E  V +        
Sbjct: 132 YSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLG 191

Query: 248 ---------------------YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
                                +  +++  ++ G  E A ++  +M+   + PD V   +L
Sbjct: 192 FGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASL 251

Query: 284 LGACRLHGNIALGEKIAEYLISQNLA 309
           L AC   G++  G+++  YL+   ++
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMS 277


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/465 (40%), Positives = 298/465 (64%), Gaps = 2/465 (0%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           LV+ Y R  D+  A  LF +MP+R+  S +T++  Y   GE+  A+ LF+ M EK+VV W
Sbjct: 202 LVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSW 261

Query: 76  NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
             +I+G++Q G    A+  +  ML + ++PNE T  AVLSAC + GAL SG  IH YI +
Sbjct: 262 TTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILD 321

Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
           +  IK++  +GT+L++MY+KCG +  A  VF  +N KD++ W +MI G+A+HG    A+Q
Sbjct: 322 N-GIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQ 380

Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
            F +M     KP ++ F+ +L+AC ++G V+ G  FF++M+ +YAIEP ++HY  +V+LL
Sbjct: 381 CFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLL 440

Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
            RAG+++EA++LV  M I PD   W  L  AC+ H +    + + + L+  +    G+Y+
Sbjct: 441 GRAGKLDEAHELVEYMPINPDLTTWAALYRACKAHKS-NRTDIVLQNLLELDPELRGSYI 499

Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYM 375
            L   +AA G +  V + R  +++K  ++  GCS IEL  ++++F A D  H +++EI +
Sbjct: 500 FLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRL 559

Query: 376 MLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVK 435
            LE I       GY+P     +HDI E++K++   +HSEKLA+  GL+ T PGT+I+I+K
Sbjct: 560 KLEGIISLAIERGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIK 619

Query: 436 NLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           NLR+C DCH++ K +SK + R I++RD  +FHHF +G+CSCGDYW
Sbjct: 620 NLRICGDCHSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 152/330 (46%), Gaps = 23/330 (6%)

Query: 25  DVLSAEKLFATMPQRSLVS---LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
           D +S   + A + +R ++S      +++C +       +  +F + EE++   +N +I G
Sbjct: 41  DTVSLRLVHAHILRRGVLSSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVFNALIRG 100

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH-SYIENSRNIK 140
             ++     ++  F  ML   V+P+ +T   VL +  ++G    GR +H + ++N  +  
Sbjct: 101 LTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCD 160

Query: 141 VNVQVGTALINMYSKCGSLKDARLVF----DRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             V+V  +L++MY+K G L  A  VF    DR+  + +++WN ++ GY      KD +Q+
Sbjct: 161 SFVRV--SLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCR---AKD-MQM 214

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
              + R   + +  ++  L+      G +N  ++ F  M      E  V  +  ++N  S
Sbjct: 215 ATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMP-----EKNVVSWTTLINGFS 269

Query: 257 RAGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSG 312
           + G  E A   Y  +++  ++P+      +L AC   G +  G +I  Y++   +  +  
Sbjct: 270 QTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRA 329

Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
               L ++YA  G  D  A V + M  K +
Sbjct: 330 IGTSLLDMYAKCGEVDCAATVFSNMNHKDI 359



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 32/191 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  + TSL+D+YA+ G+V  A  +F+ M  + ++S                         
Sbjct: 327 DRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILS------------------------- 361

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                 W  MI G+A HG  ++A+  FR+M+    +P+EV  +AVL+AC   G ++ G  
Sbjct: 362 ------WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLN 415

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
               +     I+  ++    ++++  + G L +A  + + +  + D+  W ++      H
Sbjct: 416 FFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAH 475

Query: 188 GFGKDALQLFN 198
              +  + L N
Sbjct: 476 KSNRTDIVLQN 486


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/472 (43%), Positives = 302/472 (63%), Gaps = 5/472 (1%)

Query: 12  VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           V+ +  DL A R G  + A  +         V LT ++  Y+K G +  AR LFD + +K
Sbjct: 111 VAKACADLSALRTGMTVHAHSILLGFGSDRFV-LTALVVLYSKCGRLPVARKLFDAIRDK 169

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
           +VV WN MI GY Q+GLA + + +++ M   K  P+ +T VA LSAC Q GAL+ GR + 
Sbjct: 170 NVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVE 229

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             I + R + ++V +G+AL+NMY++CG +  AR  FD + +++VV W SMI GY MHG G
Sbjct: 230 RRIVSER-MDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHG 288

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A++L++ M      P+D+TF+ +LSACAHAGL+ EGR  F  MK  Y + P+VEHY  
Sbjct: 289 HEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCS 348

Query: 251 MVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           MV++  RAG++EEA + + D M  +P   +W  +LGAC++H N +LG ++AE LI     
Sbjct: 349 MVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPE 408

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           N   +VLLSNIYA  G    V +VR  M ++ ++K+ G S IEL    H F  G+  H K
Sbjct: 409 NPSYHVLLSNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQK 468

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL-ISTQPG 428
           ++EIY  LEE+   + A GY+P+T+ VLH++ E++++ +L  HSEKLAVA+GL +S    
Sbjct: 469 TREIYQYLEELVHRISAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSAGST 528

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T ++++KNLR+C DCH   K +S    R+I++RD++RFHHF +G CSC +YW
Sbjct: 529 TPLRVIKNLRICSDCHLAIKFMSAVENREIIVRDKHRFHHFKDGKCSCLEYW 580



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 3/262 (1%)

Query: 31  KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
           +L  T   R L  +T +       G    A ++       D   ++ +       GL   
Sbjct: 29  RLVVTGHSRCLPLITKLANLAVAAGAAPYAHLVATSHPASDSFLFSSLARAATHQGLPLA 88

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           AL  +R +L+  +  +     AV  AC  + AL +G  +H++         +  V TAL+
Sbjct: 89  ALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMTVHAH-SILLGFGSDRFVLTALV 147

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
            +YSKCG L  AR +FD + DK+VV WN+MI GY  +G  +  ++++ EM   +  P  +
Sbjct: 148 VLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSM 207

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           TF+  LSACA AG ++ GR     +  E  ++  V     +VN+ +R G V++A +   D
Sbjct: 208 TFVATLSACAQAGALDLGREVERRIVSE-RMDISVFLGSALVNMYARCGVVDKARQW-FD 265

Query: 271 MKIEPDSVLWGTLLGACRLHGN 292
           +  E + V W +++    +HG+
Sbjct: 266 VLQERNVVTWTSMIAGYGMHGH 287



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 35/214 (16%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D  +++ ++LV++YAR G V  A + F  + +R++V+                      
Sbjct: 237 MDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVT---------------------- 274

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
                    W  MI GY  HG  +EA+ L+  M  +   PN+VT VAVLSAC   G +  
Sbjct: 275 ---------WTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITE 325

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRV-NDKDVVVWNSMIVG 183
           GR   + ++    +   V+   ++++MY + G L++A + + D +  D    VW +++  
Sbjct: 326 GRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGA 385

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
             MH      +++   +  IRL+P + ++  LLS
Sbjct: 386 CKMHKNFSLGVEVAERL--IRLEPENPSYHVLLS 417


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/443 (41%), Positives = 277/443 (62%), Gaps = 1/443 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +R L    ++L+ Y   GE+   +VLFD ME+  +V WN +I G+ Q+G    AL LFR+
Sbjct: 512 ERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQ 571

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M+   ++P  ++ + V  AC  + +L  GR  H+Y      ++ N  +  ++I+MY+K G
Sbjct: 572 MVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHL-LEDNAFIACSIIDMYAKNG 630

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++  +  VF+ + +K    WN+MI+GY MHG  K+A++LF EM R    P D+TF+G+L+
Sbjct: 631 AITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLT 690

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC H+GL++EG R+ + MK  + ++P ++HY C++++L RAGQ++ A ++  +M  EPD 
Sbjct: 691 ACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDV 750

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +W +LL  CR+H N+ +GEK+A  L          YVLLSN+YA +G WD V +VR  M
Sbjct: 751 GIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRM 810

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           KE  ++K+ GCS IEL+ KV  F+ G+      +EI  +   +   +   GY P T  V 
Sbjct: 811 KEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQ 870

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ E++K   L  HSEKLA+ +GLI T  GT++++ KNLR+C DCH   KLISK   R+
Sbjct: 871 HDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMERE 930

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD  RFHHF  G CSCGDYW
Sbjct: 931 IVVRDNKRFHHFNKGFCSCGDYW 953



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/453 (21%), Positives = 190/453 (41%), Gaps = 120/453 (26%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEV--- 57
            VK SLDK+L V+ +L+D+Y++ G ++ ++ +F     +++VS  TM+  ++ +G++   
Sbjct: 302 AVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGT 361

Query: 58  ----------------------AAARVLFDDM---EEKDVVCW-------------NVMI 79
                                  A  V FD+      K++ C+             N  +
Sbjct: 362 FDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFV 421

Query: 80  DGYAQ-----------HGLANEALVLFRRML---AEKVEP-----------------NEV 108
             YA+           HG+ ++ L  +  ++   A+  +P                 +  
Sbjct: 422 ASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNF 481

Query: 109 TAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFD 167
           T  ++LSAC ++ +L  G+ +H +I   RN ++ ++ V  +++++Y  CG L   +++FD
Sbjct: 482 TVCSLLSACSKLKSLRLGKEVHGFI--IRNWLERDLFVYLSVLSLYIHCGELCTVQVLFD 539

Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-------- 219
            + D  +V WN++I G+  +GF + AL LF +M    ++P  I+ + +  AC        
Sbjct: 540 AMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRL 599

Query: 220 ---AHA------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
              AHA                        G + +  + FN +K++ A       +  M+
Sbjct: 600 GREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS-----WNAMI 654

Query: 253 NLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN-- 307
                 G+ +EA KL  +M+     PD + +  +L AC   G +  G +  + + S    
Sbjct: 655 MGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGL 714

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             N   Y  + ++    G  D   RV   M E+
Sbjct: 715 KPNLKHYACVIDMLGRAGQLDNALRVAAEMSEE 747



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 171/439 (38%), Gaps = 107/439 (24%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGE----- 56
           VK  L +DL+V  +LV  Y   G V  A KLF  MP+R+LVS  +M+  ++  G+     
Sbjct: 214 VKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFM 273

Query: 57  ------VAAARVLFDDME----------------EKDVVCWNVMIDGYAQHGLANEALVL 94
                 V    V   + E                +K++V  N ++D Y++ G   ++ ++
Sbjct: 274 PDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMI 333

Query: 95  F-------------------------------RRMLA--EKVEPNEVTAVAVLSACGQIG 121
           F                               R+MLA  E V+ +EVT +  +  C    
Sbjct: 334 FKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDES 393

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L S + +H Y    +    +  +  A +  Y+KCGSL  A+ VF  +  K +  WN++I
Sbjct: 394 VLPSLKELHCY-SLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALI 452

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA--------------------- 220
            GYA     + +L    +M    L P + T   LLSAC+                     
Sbjct: 453 GGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLE 512

Query: 221 --------------HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
                         H G +   +  F+ M+D   +       G + N     G  E A  
Sbjct: 513 RDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQN-----GFPERALG 567

Query: 267 LVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS--NIY 321
           L   M    I+P  +   T+ GAC L  ++ LG +   Y + ++L     ++  S  ++Y
Sbjct: 568 LFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYAL-KHLLEDNAFIACSIIDMY 626

Query: 322 AAIGNWDGVARVRTLMKEK 340
           A  G     ++V   +KEK
Sbjct: 627 AKNGAITQSSKVFNGLKEK 645



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 124/250 (49%), Gaps = 16/250 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
           T ++T YA  G    +R  FD +  K++  WN +I  Y+++ L +E L +F +M+++  +
Sbjct: 124 TRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHL 183

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T   V+ AC  I  +  G  +H  +  +  ++ ++ VG AL++ Y   G + DA 
Sbjct: 184 LPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVE-DLFVGNALVSFYGTHGFVSDAL 242

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            +FD + ++++V WNSMI  ++ +  G D              P   T + +L  CA   
Sbjct: 243 KLFDIMPERNLVSWNSMIRVFSDN--GDDG----------AFMPDVATVVTVLPVCARER 290

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
            +  G+   +    + +++ ++     ++++ S+ G + ++ +++  +    + V W T+
Sbjct: 291 EIGVGKG-VHGWAVKLSLDKELVVNNALMDMYSKWGCIIDS-QMIFKLNNNKNVVSWNTM 348

Query: 284 LGACRLHGNI 293
           +G     G+I
Sbjct: 349 VGGFSAEGDI 358



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L A G+   +E GR IH  +  S  ++ +  + T +I MY+ CGS  D+R  FD +  K
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSK 149

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++  WN++I  Y+ +    + L++F +M  +  L P + TF  ++ ACA    V  G   
Sbjct: 150 NLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAV 209

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              +     +E        +V+     G V +A KL  D+  E + V W +++
Sbjct: 210 HGLVVKTGLVEDLFVG-NALVSFYGTHGFVSDALKL-FDIMPERNLVSWNSMI 260



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 32/188 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K  L+ + +++ S++D+YA+ G +  + K+F  + ++S  S   M+  Y   G     
Sbjct: 607 ALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGR---- 662

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                      A EA+ LF  M      P+++T + VL+AC   
Sbjct: 663 ---------------------------AKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHS 695

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G L  G      +++S  +K N++    +I+M  + G L +A R+  +   + DV +WNS
Sbjct: 696 GLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNS 755

Query: 180 MIVGYAMH 187
           ++    +H
Sbjct: 756 LLSWCRIH 763


>gi|302764608|ref|XP_002965725.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
 gi|300166539|gb|EFJ33145.1| hypothetical protein SELMODRAFT_84657 [Selaginella moellendorffii]
          Length = 502

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/450 (44%), Positives = 279/450 (62%), Gaps = 9/450 (2%)

Query: 40  SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHGLANEALVLFR 96
           +L+    ++  YAK  ++  A  LF +M E+    VV W+ MI  YA HG   EAL+LF 
Sbjct: 53  NLLVQNALVNFYAKCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFH 112

Query: 97  RMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV-GTALINMYS 154
           RM  + +VEPN +T   V +ACG +  LE GR IH+    S  +K +  +   AL+NM+ 
Sbjct: 113 RMRKDGRVEPNAMTFTGVFNACGVVEDLEQGREIHALAMASGELKSSSPILENALLNMFV 172

Query: 155 KCGSLKDARLVFDRVNDKDV----VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           + GSL++AR VFD ++  D     V W +MI   A HG G +AL+LF EM    +     
Sbjct: 173 RFGSLEEARKVFDAMDHPDAFSNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADAT 232

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           TFI +L AC+HAGL+ E   FF++M ++YAI P   HY   ++ + RAG++++A +L+  
Sbjct: 233 TFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHS 292

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
           M   P++V W TLL ACR+H       K+AE L      +S  Y LL N+YAA   +   
Sbjct: 293 MPFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQ 352

Query: 331 ARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390
            RVR  M ++G++K P  S IE+ NKVHEF+AGD  HP   EI + LE++ G ++  GYV
Sbjct: 353 MRVRKSMTDRGLKKVPRKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYV 412

Query: 391 PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLI 450
           P T+ VLH + E++K+  + +HSEKLA+AFGLI+T PGT + IVKNLRVC DCHA  K+I
Sbjct: 413 PNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVI 472

Query: 451 SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +K   R+I++RD +RFHH  +G CSC DYW
Sbjct: 473 AKIMRRRIVVRDTHRFHHLEDGQCSCKDYW 502



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 121/237 (51%), Gaps = 22/237 (9%)

Query: 94  LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           L+  M +  + P++ T    LS+C  + + E G  IH +  +      N+ V  AL+N Y
Sbjct: 6   LYDSMQSHGLFPSDFTISVALSSCSSLKSFERGARIHRWA-DEHGYGSNLLVQNALVNFY 64

Query: 154 SKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSD 209
           +KC  + +A  +F  +++   + VV W++MI  YA+HG G++AL LF+ M +  R++P+ 
Sbjct: 65  AKCSKIPEAMKLFGEMSERTSRTVVSWSAMIGAYALHGRGQEALLLFHRMRKDGRVEPNA 124

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE---PKVEHYGCMVNLLSRAGQVEEAYK 266
           +TF G+ +AC     + +GR           ++   P +E+   ++N+  R G +EEA K
Sbjct: 125 MTFTGVFNACGVVEDLEQGREIHALAMASGELKSSSPILEN--ALLNMFVRFGSLEEARK 182

Query: 267 LVMDMKIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNL----ANSGTYV 315
            V D    PD    SV W  ++ A   HG    G++  E     NL    A++ T++
Sbjct: 183 -VFDAMDHPDAFSNSVSWTAMIAALAQHGQ---GDEALELFKEMNLEGMVADATTFI 235


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/438 (42%), Positives = 282/438 (64%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G++  AR +F+ + E+DVV    +I GYAQ GL  EAL +F+R+ +E + 
Sbjct: 191 SSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMR 250

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++L+A   +  L+ G+  H ++   R +     +  +LI+MYSKCG+L  A+ 
Sbjct: 251 PNYVTYASLLTALSGLALLDHGKQAHCHVLR-RELPFYAVLQNSLIDMYSKCGNLSYAQR 309

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           +FD + ++  + WN+M+VGY+ HG G++ L+LF  M    R+KP  +T + +LS C+H  
Sbjct: 310 LFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGK 369

Query: 224 LVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           + + G   ++ M   EY I+P  EHYGC+V++L RAG+++EA++ +  M  +P + + G+
Sbjct: 370 MEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGS 429

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR+H ++ +GE +   LI     N+G YV+LSN+YA+ G W+ V  VR +M +K V
Sbjct: 430 LLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAV 489

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S I+    +H F A D  HP+ +E+   ++EI+  +K  GYVP    VL+D+ E
Sbjct: 490 TKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDE 549

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L  HSEKLA+ FGLI+T  G  I++ KNLR+C DCH   K+ SK   R++ +RD
Sbjct: 550 EQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRD 609

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFH  V G CSCGDYW
Sbjct: 610 KNRFHQIVKGICSCGDYW 627



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 145/258 (56%), Gaps = 8/258 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y K   +  AR + D+M EK+VV W  MI  Y+Q G ++EAL +F  M+    +
Sbjct: 90  TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGK 149

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   VL++C +   L  G+ IH  I    N   ++ VG++L++MY+K G +++AR 
Sbjct: 150 PNEFTFATVLTSCIRASGLALGKQIHGLIVKW-NYDSHIFVGSSLLDMYAKAGQIEEARE 208

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + ++DVV   ++I GYA  G  ++AL++F  +    ++P+ +T+  LL+A +   L
Sbjct: 209 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLAL 268

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G++   + ++ E      +++   ++++ S+ G +  A +L  +M  E  ++ W  +
Sbjct: 269 LDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYAQRLFDNMP-ERTAISWNAM 325

Query: 284 LGACRLHGNIALGEKIAE 301
           L     HG   LG ++ E
Sbjct: 326 LVGYSKHG---LGREVLE 340



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A+L+AC    AL  G+ +H+++  +R +     + T L+  Y KC  L+DAR V D + +
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATY-LRTRLLIFYGKCDCLEDARKVLDEMPE 114

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           K+VV W +MI  Y+  G   +AL +F EM R   KP++ TF  +L++C  A  +  G++ 
Sbjct: 115 KNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQI 174

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
              +  ++  +  +     ++++ ++AGQ+EEA ++
Sbjct: 175 HGLIV-KWNYDSHIFVGSSLLDMYAKAGQIEEAREI 209


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 280/434 (64%), Gaps = 1/434 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++T YA   ++  +  +F      +VV W  ++ GY  +    +AL +F  M+ E V PN
Sbjct: 244 LITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPN 303

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + +  + L++C  + AL+ GR IH+       ++ +V VG +LI MY +CG+L D  ++F
Sbjct: 304 QSSFTSALNSCCGLEALDWGREIHT-AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF 362

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            R++ K++V WNS+IVG A HG G  AL  FN+M R  ++P +ITF GLLSAC+H+G+  
Sbjct: 363 KRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 422

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +GR  F    +  + E K++HY CMV++L R+G++EEA +L+ +M ++ +S++W  LL A
Sbjct: 423 KGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 482

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           C +H  + + E+ A+ +I      S  YVLLSN+YA+   W  V+R+R  MK++G+ K+P
Sbjct: 483 CTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQP 542

Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
           G S I +    +EFL+GD  HP S  IY  LE + G LK  GYVP  +  LHD+ ++QK+
Sbjct: 543 GRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKE 602

Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
             L  HSE+LA+ FGLIST  G++I ++KNLRVC DCH+  KLI+K   RKI++RD  RF
Sbjct: 603 VMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRF 662

Query: 467 HHFVNGTCSCGDYW 480
           HHF++G CSCGDYW
Sbjct: 663 HHFMDGRCSCGDYW 676



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 14  TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
           T++++ + + G +  AE LF  MP R + +  +M+  Y   G V     LF +M  ++V+
Sbjct: 108 TTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVI 167

Query: 74  CWNVMIDGYAQHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHS 131
            W  MI G  QHG + EAL LFR+M+   VE  P   T   V++AC    AL  G  IH+
Sbjct: 168 SWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHA 227

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
           ++        +  +  ALI  Y+ C  ++D+  VF      +VV+W +++ GY ++   +
Sbjct: 228 HVFK-LGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHE 286

Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
           DAL++F EM R  + P+  +F   L++C     ++ GR   +T   +  +E  V     +
Sbjct: 287 DALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGRE-IHTAAVKLGLETDVFVGNSL 345

Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVL-WGTLLGACRLHG 291
           + +  R G + +   +V+  +I   +++ W +++  C  HG
Sbjct: 346 IVMYYRCGNLNDG--VVIFKRISKKNIVSWNSVIVGCAQHG 384



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 46/279 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D+Y+ T ++  YAR      A +LF  MP + +VS  +M+       ++  AR LFD+M 
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMP 100

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           E+ VV W  MI+G+ Q G    A  LF +M                              
Sbjct: 101 ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR--------------------------- 133

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
                        ++    ++I  Y   G ++D   +F  +  ++V+ W SMI G   HG
Sbjct: 134 -------------DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHG 180

Query: 189 FGKDALQLFNEM--CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKV 245
             ++AL LF +M  C + +KP+  T+  +++ACA+A  + +G +   +  K  Y+ +  +
Sbjct: 181 RSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYI 240

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
                ++   +   Q+E++ + V   K+  + V+W  L+
Sbjct: 241 S--AALITFYANCKQMEDSLR-VFHGKLHMNVVIWTALV 276



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 1/143 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++  Y + G +    V+F  + +K++V WN +I G AQHG    AL  F +M+   VEP
Sbjct: 344 SLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEP 403

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RL 164
           +E+T   +LSAC   G  + GR +  Y   +++ +V +     ++++  + G L++A  L
Sbjct: 404 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEEL 463

Query: 165 VFDRVNDKDVVVWNSMIVGYAMH 187
           + +     + +VW  ++    MH
Sbjct: 464 IRNMPVKANSMVWLVLLSACTMH 486



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFIGLL 216
           + +AR VFD+V+  DV ++  MI GYA +     ALQLF EM      P    +++  ++
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM------PVKDVVSWNSMI 80

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
             C     +   R+ F+ M      E  V  +  M+N   + G++E A  L   M    D
Sbjct: 81  KGCFDCADLTMARKLFDEMP-----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR-D 134

Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
              W +++     +G +  G ++ + +  +N+
Sbjct: 135 IAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNV 166


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 281/435 (64%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  YA+ G    A  LF ++E KD + WN +I G+ Q  L  +AL++F +M     + 
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKY 546

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N  T ++ +SA   +  ++ G+ +H     + +     +V  ALI++Y KCGS++DA+++
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGSIEDAKMI 605

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  ++ ++ V WN++I   + HG G +AL LF++M +  LKP+D+TFIG+L+AC+H GLV
Sbjct: 606 FSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 665

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            EG  +F +M + Y + P  +HY C+V++L RAGQ++ A + V +M I  ++++W TLL 
Sbjct: 666 EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLS 725

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           AC++H NI +GE  A++L+     +S +YVLLSN YA  G W    +VR +MK++G++KE
Sbjct: 726 ACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKE 785

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S IE+ N VH F  GD  HP S +IY  L E+N  L   GY  +   + H+  ++QK
Sbjct: 786 PGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQK 845

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
             +  VHSEKLAVAFGL++  P   ++++KNLRVC DCH+  K  S+ T R+I++RD  R
Sbjct: 846 DPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYR 905

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF +G+CSCGDYW
Sbjct: 906 FHHFNSGSCSCGDYW 920



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 144/293 (49%), Gaps = 12/293 (4%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAAR 61
           L  D     SL+   A  GD+   ++L + + +  +    ++  ++L  Y K G++  A 
Sbjct: 241 LRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAH 300

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+  +  +VV WN+M+  Y Q     ++  +F +M A  + PN+ T   +L  C   G
Sbjct: 301 DIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            +E G  IHS +      + ++ V   LI+MYSK G L  AR + + +  +DVV W SMI
Sbjct: 361 QIELGEQIHS-LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMI 419

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK-DEYA 240
            GY  H F ++AL  F EM    + P +I      SACA    + +G +    +    YA
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYA 479

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL---GACRLH 290
            +  +  +  +VNL +R G+ EEA+ L  +++   D + W  L+   G  RL+
Sbjct: 480 ADISI--WNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLISGFGQSRLY 529



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 141/292 (48%), Gaps = 36/292 (12%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           ++K   + D+YVS  L+D+Y++ G                         C  K      A
Sbjct: 372 SIKNGFESDMYVSGVLIDMYSKYG-------------------------CLDK------A 400

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R + + +E++DVV W  MI GY QH    EAL  F+ M    V P+ +   +  SAC  I
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A+  G  IH+ +  S     ++ +   L+N+Y++CG  ++A  +F  +  KD + WN +
Sbjct: 461 KAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGL 519

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEY 239
           I G+      K AL +F +M +   K +  TFI  +SA A+   + +G++     +K  +
Sbjct: 520 ISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGH 579

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             E +V +   +++L  + G +E+A  +  +M +  + V W T++ +C  HG
Sbjct: 580 TSETEVAN--ALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 49/337 (14%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  YAK G V  AR +F ++  +D V W  M+ GYAQ GL  EA  L+ +M    V P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
                +VLSAC +      GR IH+ +   +       VG ALI +Y   GS K A  VF
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYK-QAFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
             +   D V +N++I G+A  G G+ ALQ+F+EM    L+P  +T   LL+ACA  G + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 227 EGRRFFNT-----MKDEYAIEPKVEHYGCMVNLLSRAGQVEE------------------ 263
           +G++  +      M  +Y  E      G +++L  + G +E                   
Sbjct: 263 KGKQLHSYLLKAGMSFDYITE------GSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNL 316

Query: 264 ---AYKLVMDMK-------------IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
              AY  + D+              I P+   +  +L  C   G I LGE+I    I +N
Sbjct: 317 MLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSI-KN 375

Query: 308 LANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
              S  YV  +L ++Y+  G  D   ++  +++++ V
Sbjct: 376 GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDV 412



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 33/206 (16%)

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
           R +  +  +G  LI++Y+K G +  AR VF  ++ +D V W +M+ GYA  G GK+A +L
Sbjct: 72  RGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRL 131

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEH-------- 247
           +++M    + P+      +LSAC    L  +GR       K  +  E  V +        
Sbjct: 132 YSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLG 191

Query: 248 ---------------------YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTL 283
                                +  +++  ++ G  E A ++  +M+   + PD V   +L
Sbjct: 192 FGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASL 251

Query: 284 LGACRLHGNIALGEKIAEYLISQNLA 309
           L AC   G++  G+++  YL+   ++
Sbjct: 252 LAACASVGDLQKGKQLHSYLLKAGMS 277


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/472 (43%), Positives = 301/472 (63%), Gaps = 5/472 (1%)

Query: 12  VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           V+ +  DL A R G  + A  +         V LT ++  Y+K G++  AR LFD + ++
Sbjct: 111 VAKACADLSALRTGAAIHAHSILLGFGSDRFV-LTALVVLYSKCGQLGVARKLFDAIRDR 169

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            VV WN MI GY Q+GLA   + +++ M A K  P+ +T VA LSAC Q GAL+ GR + 
Sbjct: 170 SVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVE 229

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             + + R + ++V +G+AL+NMY++CG +  AR  FD + +++VV W SMI GY MHG G
Sbjct: 230 RRVVSER-MDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHG 288

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
           ++A++LF+ M      P+ +TF+ +LSACAHAGLV EGR  F  MK  Y + P+VEHY  
Sbjct: 289 REAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCS 348

Query: 251 MVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           MV++  RAG ++EA + + D M  EP   +W  +LGAC++H N  LG ++AE LI+    
Sbjct: 349 MVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPE 408

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           N   +VLLSNIYA  G    V +VR  M ++ ++K+ G S IEL    H F  G+  HP+
Sbjct: 409 NPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEKSHPQ 468

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL-ISTQPG 428
           + EIY  LEE+   + A GY+P+T+ VLH++ E++++ +L  HSEKLAVA+GL +S    
Sbjct: 469 TTEIYHYLEELIHRITAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMSVGST 528

Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           T I+++KNLR+C DCH   K +S    R+I++RD++RFHHF +G CSC +YW
Sbjct: 529 TPIRVIKNLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 14  TSLVDLYARGGDVLSAE-KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV 72
           +SL+    RGG +  A  +L  T   RSL  +T + T     G    A +L       D 
Sbjct: 11  SSLLLAGPRGGPLKQAHARLVVTGHGRSLPLITKLATLAVAAGAAPYAHLLATSHPAPDS 70

Query: 73  VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
             ++ +    A HGL   A+  +R +L+  +  +  T  AV  AC  + AL +G  IH++
Sbjct: 71  FLFSSLTRTAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHAH 130

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                    +  V TAL+ +YSKCG L  AR +FD + D+ VV WN+MI GY  +G  + 
Sbjct: 131 -SILLGFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAER 189

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
            + ++ EM   +  P  +TF+  LSACA AG ++ GR     +  E  ++  V     +V
Sbjct: 190 GIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSE-RMDISVFLGSALV 248

Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           N+ +R G V++A +   D   E + V W +++    +HG+
Sbjct: 249 NMYARCGVVDKARRW-FDALQERNVVTWTSMIAGYGMHGH 287


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/441 (43%), Positives = 289/441 (65%), Gaps = 8/441 (1%)

Query: 45  TTMLTCYAKQGEV--AAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           T ++  YA  G +  AAA      ME++ DVV WN +I   +QHG    AL  FRRM   
Sbjct: 466 TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLH 525

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V PN++T VAVL AC    AL  G  +H ++ +S  ++ NV V TAL +MY +CGSL+ 
Sbjct: 526 GVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHS-GMESNVFVATALASMYGRCGSLES 584

Query: 162 ARLVFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           AR +F++V  ++DVV++N+MI  Y+ +G   +AL+LF  M +   +P + +F+ +LSAC+
Sbjct: 585 AREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACS 644

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GL +EG   F +M+  Y I P  +HY C V++L RAG + +A +L+  M ++P  ++W
Sbjct: 645 HGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVW 704

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQ-NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
            TLLGACR + ++  G ++A  ++ + +  +   YV+LSNI A  G WD  A VRT M+ 
Sbjct: 705 KTLLGACRKYRDVDRG-RLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMES 763

Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
           +G++K+ G S IE+ ++VHEF+AGD  HP+S+EIY  LE ++  ++  GYVP T++VL  
Sbjct: 764 RGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRK 823

Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
           + E +K+  L  HSE+LA+A G++S+   T ++++KNLRVC DCH   K ISK   ++I+
Sbjct: 824 VDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIV 882

Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
           +RD +RFHHFV+G+CSCGDYW
Sbjct: 883 VRDTHRFHHFVDGSCSCGDYW 903



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 142/262 (54%), Gaps = 14/262 (5%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +++LV  T + + YA+ G +  A+ +FD   E+DVV WN M+  YAQHG  +EA +LF R
Sbjct: 257 EQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFAR 316

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           ML E + P++VT V   + C    +L  GR IH+     + +  ++ +G AL++MY++CG
Sbjct: 317 MLHEGIPPSKVTLVNASTGC---SSLRFGRMIHA-CALEKGLDRDIVLGNALLDMYTRCG 372

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S ++AR +F+ +   + V WN+MI G +  G  K AL+LF  M    + P   T++ LL 
Sbjct: 373 SPEEARHLFEGI-PGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLE 431

Query: 218 ACA----HAGLVNEGRRFFNTMKD-EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
           A A     A  + EGR+  + +    YA EP +     +V + +  G ++EA        
Sbjct: 432 AVASNPEEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGA 489

Query: 273 IEP--DSVLWGTLLGACRLHGN 292
           +E   D V W  ++ +   HG+
Sbjct: 490 MEDRHDVVSWNAIISSLSQHGH 511



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 134/277 (48%), Gaps = 15/277 (5%)

Query: 21  ARGGDVLSAEKLFATMPQRSL----VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWN 76
           AR GD+     + A + +  L    V    +L  Y   G VA+A +LF+ ME +D+V WN
Sbjct: 139 ARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWN 197

Query: 77  VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
             I   AQ G  + AL LF+RM  E V P  +T V  LS C +I      R IHS +  S
Sbjct: 198 AAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKI---RQARAIHSIVRES 254

Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
             ++  + V TAL + Y++ G L  A+ VFDR  ++DVV WN+M+  YA HG   +A  L
Sbjct: 255 -GLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           F  M    + PS +T +   + C+         R  +    E  ++  +     ++++ +
Sbjct: 314 FARMLHEGIPPSKVTLVNASTGCSSLRF----GRMIHACALEKGLDRDIVLGNALLDMYT 369

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
           R G  EEA  L     I  ++V W T++      G +
Sbjct: 370 RCGSPEEARHLFEG--IPGNAVSWNTMIAGSSQKGQM 404



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 7/248 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y K   +     +F  +E +D   W  +I  Y +HG A  A+ +F RM  E V  +
Sbjct: 68  LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCD 127

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            VT +AVL AC ++G L  GR IH++I  S  ++    +   L+++Y  CG +  A L+F
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVES-GLEGKSVLANLLLHIYGSCGCVASAMLLF 186

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           +R+ ++D+V WN+ I   A  G    AL+LF  M    ++P+ IT +  LS CA    + 
Sbjct: 187 ERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK---IR 242

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           + R   + ++ E  +E  +     + +  +R G +++A K V D   E D V W  +LGA
Sbjct: 243 QARAIHSIVR-ESGLEQTLVVSTALASAYARLGHLDQA-KEVFDRAAERDVVSWNAMLGA 300

Query: 287 CRLHGNIA 294
              HG+++
Sbjct: 301 YAQHGHMS 308



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 153/354 (43%), Gaps = 75/354 (21%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           L++ L VST+L   YAR G +  A+++F    +R +VS   ML  YA+ G ++ A +LF 
Sbjct: 256 LEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFA 315

Query: 66  DM------------------------------------EEKDVVCWNVMID--------- 80
            M                                     ++D+V  N ++D         
Sbjct: 316 RMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPE 375

Query: 81  ---------------------GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG- 118
                                G +Q G    AL LF+RM  E + P   T + +L A   
Sbjct: 376 EARHLFEGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVAS 435

Query: 119 ---QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR--VNDK- 172
              +  A+  GR +HS I  S        +GTA++ MY+ CG++ +A   F R  + D+ 
Sbjct: 436 NPEEARAMAEGRKLHSRI-VSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRH 494

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           DVV WN++I   + HG GK AL  F  M    + P+ IT + +L ACA A  + EG    
Sbjct: 495 DVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVH 554

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           + ++    +E  V     + ++  R G +E A ++   + +E D V++  ++ A
Sbjct: 555 DHLRHS-GMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 14/187 (7%)

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V +L A G    L  GR IH+ I +   + +  ++G  L+ +Y KC SL D   VF R+ 
Sbjct: 33  VRLLRAAGDDRLLSQGRRIHARIVS---LGLEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
            +D   W ++I  Y  HG  K A+ +F+ M +  ++   +TF+ +L ACA  G +++GR 
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                   + +E  +E    + NLL       G V  A  +++  ++E D V W   + A
Sbjct: 150 IH-----AWIVESGLEGKSVLANLLLHIYGSCGCVASA--MLLFERMERDLVSWNAAIAA 202

Query: 287 CRLHGNI 293
               G++
Sbjct: 203 NAQSGDL 209


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/438 (42%), Positives = 280/438 (63%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +++L  YAK G++  AR +F+ + E+DVV    +I GYAQ GL  EAL +F R+ +E + 
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMS 251

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN VT  ++L+A   +  L+ G+  H ++   R +     +  +LI+MYSKCG+L  AR 
Sbjct: 252 PNYVTYASLLTALSGLALLDHGKQAHCHVLR-RELPFYAVLQNSLIDMYSKCGNLSYARR 310

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
           +FD + ++  + WN+M+VGY+ HG G++ L+LF  M    R+KP  +T + +LS C+H  
Sbjct: 311 LFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGR 370

Query: 224 LVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           + + G   F+ M   EY  +P  EHYGC+V++L RAG+++EA++ +  M  +P + + G+
Sbjct: 371 MEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGS 430

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LLGACR+H ++ +GE +   LI     N+G YV+LSN+YA+ G W  V  VR +M +K V
Sbjct: 431 LLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAV 490

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPG S I+    +H F A D  HP+ +E+   ++EI+  +K  GYVP    VL+D+ E
Sbjct: 491 TKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDE 550

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +QK+  L  HSEKLA+ FGLI+T  G  I++ KNLR+C DCH   K+ SK   R++ +RD
Sbjct: 551 EQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRD 610

Query: 463 RNRFHHFVNGTCSCGDYW 480
           +NRFH  V+G CSCGDYW
Sbjct: 611 KNRFHQIVDGICSCGDYW 628



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 145/258 (56%), Gaps = 8/258 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +L  Y K   +  AR + D+M EK+VV W  MI  Y+Q G ++EAL +F  M+    +
Sbjct: 91  TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGK 150

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   VL++C +   L  G+ IH  I    N   ++ VG++L++MY+K G +K+AR 
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKW-NYDSHIFVGSSLLDMYAKAGQIKEARE 209

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+ + ++DVV   ++I GYA  G  ++AL++F+ +    + P+ +T+  LL+A +   L
Sbjct: 210 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLAL 269

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           ++ G++   + ++ E      +++   ++++ S+ G +  A +L  +M  E  ++ W  +
Sbjct: 270 LDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAM 326

Query: 284 LGACRLHGNIALGEKIAE 301
           L     HG   LG ++ E
Sbjct: 327 LVGYSKHG---LGREVLE 341



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
           A+L+AC    AL  G+ +H+++  +R +     + T L+  Y KC  L+DAR V D + +
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATY-LRTRLLIFYGKCDCLEDARKVLDEMPE 115

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
           K+VV W +MI  Y+  G   +AL +F EM R   KP++ TF  +L++C  A  +  G++ 
Sbjct: 116 KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI 175

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
              +  ++  +  +     ++++ ++AGQ++EA ++
Sbjct: 176 HGLIV-KWNYDSHIFVGSSLLDMYAKAGQIKEAREI 210


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/438 (42%), Positives = 275/438 (62%), Gaps = 2/438 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +  ++  Y K G++ ++  LF+D+  K++V WN MI  + Q+GLA E L  F       +
Sbjct: 81  VNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGL 140

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P++ T +AVL  C  IG +   + IH  I        N  + TAL+++Y+K G L+D+ 
Sbjct: 141 KPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFC-GFNANTCITTALLDLYAKLGRLEDSS 199

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  +   D + W +M+  YA HG+G+DA++ F  M    L P  +TF  LL+AC+H+G
Sbjct: 200 TVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSG 259

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           LV EGR +F TM   Y IEP+++HY CMV+L+ R+G +++AY L+ +M +EP S +WG L
Sbjct: 260 LVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGAL 319

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGACR++ +  LG K A+ L      +   Y++LSNIY+A G W   +R+R LMK+KG+ 
Sbjct: 320 LGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLV 379

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGE 402
           +  G S IE  NK+H+F+ GD  HP+S++I   L+EI   +K+E G+  +T+ VLHD+ E
Sbjct: 380 RASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDE 439

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
             K+  +  HSEK+A+AFGL+   P   I I KNLR+C DCH   K IS    R+I++RD
Sbjct: 440 DVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRD 499

Query: 463 RNRFHHFVNGTCSCGDYW 480
             RFHHF+ G+CSC DYW
Sbjct: 500 SKRFHHFLEGSCSCRDYW 517



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 15/232 (6%)

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--EPNEVTAVAVLSACGQIGALE 124
           M E+D+V WN +I GYA  G   +   +  RM+  +V   PNEVT ++++SAC   G  E
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
            G  IH  +  S  +   V+V  AL+N+Y K G L  +  +F+ ++ K++V WN+MIV +
Sbjct: 61  EGVCIHGLVMKS-GVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIH 119

Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN-----EGRRFFNTMKDEY 239
             +G  ++ L  FN    + LKP   TF+ +L  C   G+V       G   F       
Sbjct: 120 LQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANT 179

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
            I         +++L ++ G++E++  + +++   PDS+ W  +L A   HG
Sbjct: 180 CITT------ALLDLYAKLGRLEDSSTVFLEI-TSPDSMAWTAMLAAYATHG 224


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/443 (41%), Positives = 274/443 (61%), Gaps = 1/443 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           +  L+   ++L  YAK GE+     +F  M   D++ WN +I              +   
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E + P+E T + +L  C  +     G+ IH YI  S   + NV +G ALI MYSKCG
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIEMYSKCG 572

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           SL++   VF  + +KDVV W ++I  + M+G GK AL+ F +M    + P  + FI  + 
Sbjct: 573 SLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIF 632

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+H+G+V EG RFF+ MK +Y +EP++EHY C+V+LL+R+G + +A + ++ M ++PD+
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDA 692

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            LWG LL ACR  GN  + +++++ ++  N  ++G YVL+SNIYA +G WD V  VR  M
Sbjct: 693 SLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSM 752

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           K KG++KEPG S IE+  +V+ F  GD    +  ++  +LE +   +  EGYV   Q  L
Sbjct: 753 KTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFAL 812

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ E  K++ L  HSE+LA+AFGL++T+PG+ + ++KNLRVC DCH V K I+K   R+
Sbjct: 813 HDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQRE 872

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD NRFH F +G CSCGD+W
Sbjct: 873 ILVRDANRFHRFKDGACSCGDHW 895



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 142/270 (52%), Gaps = 5/270 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L+ Y K   +  AR +F  M  KD V WN MI GYAQ G    ++ LF  M+   V P+
Sbjct: 263 LLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PD 321

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            ++  + + ACGQ G L+ G+++H Y+  S   + +      LI+MY+KCG L  A+ VF
Sbjct: 322 MLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVF 380

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           D    KD V WNS+I GY   G+ K+ L+ F +M ++  KP  +TF+ LLS  +    +N
Sbjct: 381 DTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLADIN 439

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           +GR     +  ++  E ++     ++++ ++ G++++  K+   M    D + W T++ +
Sbjct: 440 QGRGIHCDVI-KFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIAS 497

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVL 316
                +  +G ++   + ++ L      VL
Sbjct: 498 SVHFDDCTVGFQMINEMRTEGLMPDEATVL 527



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           V+   ++  YAK G++ AA+ +FD  + KD V WN +I+GY Q G   E L  F+ M  E
Sbjct: 358 VACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME 417

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           + +P+ VT V +LS   Q+  +  GR IH  +      +  + +G +L+++Y+KCG + D
Sbjct: 418 R-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKF-GFEAELIIGNSLLDVYAKCGEMDD 475

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
              VF  ++  D++ WN++I             Q+ NEM    L P + T +G+L  C+ 
Sbjct: 476 LLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSL 535

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
             +  +G+     +      E  V     ++ + S+ G +E   K+   MK E D V W 
Sbjct: 536 LAVRRQGKEIHGYIFKS-GFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTWT 593

Query: 282 TLLGACRLHG 291
            L+ A  ++G
Sbjct: 594 ALISAFGMYG 603



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 185/423 (43%), Gaps = 58/423 (13%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++   + DLY+  +L+D+Y+R  D+                                 AR
Sbjct: 148 MEMGFESDLYIGNALIDMYSRFVDL-------------------------------DNAR 176

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F++M  +D V WN +I GY  +G   +AL ++ +     + P+  T  +VL ACG + 
Sbjct: 177 YVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLM 236

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           A++ G  +H  IE    I  +V +G  L++MY K   L++AR VF ++  KD V WN+MI
Sbjct: 237 AVKEGVAVHGVIEKI-GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMI 295

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            GYA  G  + +++LF +M      P  ++    + AC  +G +  G +F +        
Sbjct: 296 CGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG-KFVHKYLIGSGF 353

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           E        ++++ ++ G +  A + V D     DSV W +L+      G    G +  +
Sbjct: 354 ECDTVACNILIDMYAKCGDLLAAQE-VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFK 412

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            +  +   +S T+VLL +I++ + +         + + +G+     C  I+   +    +
Sbjct: 413 MMKMERKPDSVTFVLLLSIFSQLAD---------INQGRGIH----CDVIKFGFEAELII 459

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
              L      ++Y    E++  LK   Y+       HDI       +  VH +   V F 
Sbjct: 460 GNSLL-----DVYAKCGEMDDLLKVFSYMSA-----HDIISWNTVIASSVHFDDCTVGFQ 509

Query: 422 LIS 424
           +I+
Sbjct: 510 MIN 512



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 154/326 (47%), Gaps = 45/326 (13%)

Query: 40  SLVSLTTMLTCYAK-QGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           S++    +++ YA+ +  +++  V        +V  WN +I     +GL  +AL  +  M
Sbjct: 53  SVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM 112

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
             +K++P+  T  +V+++C +I  LE G  +H +       + ++ +G ALI+MYS+   
Sbjct: 113 REKKLQPDAFTFPSVINSCARILDLELGCIVHEH-AMEMGFESDLYIGNALIDMYSRFVD 171

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L +AR VF+ ++++D V WNS+I GY  +GF +DAL ++++     + P   T   +L A
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 219 CAHAGLVNEG-----------------------------------RRFFNTMKDEYAIEP 243
           C     V EG                                   RR F+ M    A++ 
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKM----AVKD 287

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            V  +  M+   ++ G+ E + KL MDM     PD +   + + AC   G++ +G+ + +
Sbjct: 288 SVT-WNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHK 346

Query: 302 YLISQNL-ANSGTYVLLSNIYAAIGN 326
           YLI      ++    +L ++YA  G+
Sbjct: 347 YLIGSGFECDTVACNILIDMYAKCGD 372



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K   + ++ +  +L+++Y++ G + +  K+F  M ++ +V+ T +++ +   GE   A  
Sbjct: 551 KSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALK 610

Query: 63  LFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEP 105
            F DME      D V +   I   +  G+  E L  F RM  +  +EP
Sbjct: 611 AFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEP 658


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/436 (42%), Positives = 281/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            ++L+ Y    +    R  F+ M +K+ VCWN M+ GY+Q+ L NEAL LFR+ML++ +E
Sbjct: 556 VSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE 615

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+   ++L AC Q+ AL  G+ +H +   +  ++ N  V  +L++MY+K G L  ++ 
Sbjct: 616 PDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMYAKSGFLGHSQR 674

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+R+N K+V  WN MI G+ +HG G  A++LF +M R   +P   TF+G+L AC HAGL
Sbjct: 675 IFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGL 734

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG  +   M+  Y +EP++EHY C++++L RAG++ EA   + +M  EPD+ +W +LL
Sbjct: 735 VSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLL 794

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +   + ++ +GEK AE L++     + +Y+LLSN+YA  G WD V  VR  MK+  +QK
Sbjct: 795 SSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQK 854

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           + GCS IEL  KV+ F+AG+  +P S EI  M   +   +   GY P    VLH++ E +
Sbjct: 855 DVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVE 914

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L+ HSEK+A+ FG ++T+ GT+++I KNLR+C DCH   K ISK   R+I++RD  
Sbjct: 915 KRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNK 974

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSCGDYW
Sbjct: 975 RFHHFKKGICSCGDYW 990



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 141/311 (45%), Gaps = 52/311 (16%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+    ++  Y+K G ++ A +LF  +E K VV WN MI  Y++ G   E   L R+M  
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407

Query: 101 EK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           E+  +E NEVT + +L AC +   L S R +H Y     + +    +  A I  Y+KCGS
Sbjct: 408 EEELMEVNEVTILNLLPACLEESELLSLRALHGY-SLRHSFQYKELINNAFIAAYAKCGS 466

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L  A  VF  +N K V  WN++I G+A +G    AL  + EM R+ + P D + + LL A
Sbjct: 467 LVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLA 526

Query: 219 CAHAGLVN-----------------------------------EGRRFFNTMKDEYAIEP 243
           C   GL+                                     GR +F TM D+ ++  
Sbjct: 527 CGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSV-- 584

Query: 244 KVEHYGCMVNLLSRAGQVE---EAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGE 297
                 C   +LS   Q E   EA  L   M    +EPD +   ++LGAC     + LG+
Sbjct: 585 ------CWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGK 638

Query: 298 KIAEYLISQNL 308
           ++  + +  +L
Sbjct: 639 EVHCFALKNSL 649



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 134/246 (54%), Gaps = 8/246 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           T ++T Y+  G    +R++FD +  K++  WN ++ GY ++ L +EA+  F  +++  + 
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEF 206

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T   ++ AC     +  G+ +H  +     + +++ VG A+I +Y KCG L +A 
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHG-MAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPSDITFIGLLSACAH 221
            +FD++ +++++ WNS+I G++ +GF  +A + F  +      L P   T + LL  C+ 
Sbjct: 266 ELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSG 325

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL-W 280
            G V+ G    + M  +  +  ++     ++++ S+ G + EA   ++  KIE  SV+ W
Sbjct: 326 EGNVDVG-MVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEA--AILFRKIENKSVVSW 382

Query: 281 GTLLGA 286
            +++GA
Sbjct: 383 NSMIGA 388



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  CGQ   +E GR +   +  S     +  + T LI MYS CG   ++RLVFDR+ +K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++  WN+++ GY  +    +A+  F E+  +   +P + TF  L+ AC     ++ G+  
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS- 231

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            + M  +  +   +     M+ L  + G ++EA +L  D   E + + W +L+
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVEL-FDKMPEQNLISWNSLI 283



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 32/178 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K SL +D +V+ SL+D+YA+ G +  ++++F  +  + + S   M+T +   G+   A
Sbjct: 644 ALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             LF+DM+  D                                +P+  T + VL AC   
Sbjct: 704 VELFEDMKRSD-------------------------------KQPDRFTFLGVLQACCHA 732

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVW 177
           G +  G    + ++    ++  ++    +I+M  + G L +A   + +   + D  +W
Sbjct: 733 GLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIW 790


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/436 (42%), Positives = 275/436 (63%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K   +  A   F  M  K+++ W  +I GY Q+G + EA+ +F  M  + ++
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T  +V+S+C  + +LE G   H     S  +   + V  AL+ +Y KCGS++DA  
Sbjct: 371 PDDFTLGSVISSCANLASLEEGAQFHCLALVS-GLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +FD +   D V W +++ GYA  G  K+ + LF +M    +KP  +TFIG+LSAC+ AG 
Sbjct: 430 LFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGF 489

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +G  +F++M+ ++ I P  +HY CM++L SR+G+++EA + +  M + PD++ WGTLL
Sbjct: 490 VEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLL 549

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            ACRL G++ +G+  AE L+  +  N  +YVLL +++A  GNW+ VA++R  M+++ V+K
Sbjct: 550 SACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKK 609

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPGCS I+  NKVH F A D  HP SK IY  LE +N  +  EGY P    VLHD+ +  
Sbjct: 610 EPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTD 669

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K + +  HSEKLA+AFGL+       I+IVKNLRVC DCH   KLISK TGR I++RD  
Sbjct: 670 KVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAV 729

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F NG CSCGD+W
Sbjct: 730 RFHKFSNGVCSCGDFW 745



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 193/347 (55%), Gaps = 13/347 (3%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           ++     + +V + LV +YA+ G +  A+++F  M  +++V   TM+T   +   V  AR
Sbjct: 167 LRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEAR 226

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF+ M ++D + W  M+ G+ Q+GL ++AL  FRRM  + +  ++ T  ++L+ACG + 
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           ALE G+ IH+YI  + +   NV VG+AL++MYSKC S+K A   F R++ K+++ W ++I
Sbjct: 287 ALEQGKQIHAYIIRT-HYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALI 345

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGY  +G  ++A+++F+EM R  + P D T   ++S+CA+   + EG +F        A+
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC-----LAL 400

Query: 242 EPKVEHY----GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
              + HY      +V L  + G +E+A++L  +M    D V W  L+      G      
Sbjct: 401 VSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFH-DQVSWTALVTGYAQFGRAKETI 459

Query: 298 KIAEYLISQNLANSG-TYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            + E ++++++   G T++ +LS    A     G +   ++ K+ G+
Sbjct: 460 DLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGI 506



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 54/341 (15%)

Query: 16  LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
           L+  Y + G    A ++F   P  +L +   +L+  A    +     LF  M ++D V +
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106

Query: 76  NVMIDGYAQHGLANEALVLFRRML--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
           N +I G++  G    A+ L+  +L     V P+ +T  A++ A   +G    GR  H  I
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI 166

Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
                  VN  VG+ L+ MY+K G + DA+ VFD ++ K+VV++N+MI G          
Sbjct: 167 LR-LGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGL--------- 216

Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
                    +R K                 +V E RR F  M D   I      +  MV 
Sbjct: 217 ---------LRCK-----------------MVEEARRLFEVMTDRDCIT-----WTTMVT 245

Query: 254 LLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
             ++ G   +A      M+   I  D   +G++L AC     +  G++I  Y+I  +  +
Sbjct: 246 GFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDD 305

Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI 351
                   N++      D  ++ R++   +   +   C +I
Sbjct: 306 --------NVFVGSALVDMYSKCRSIKPAETAFRRMSCKNI 338


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 281/438 (64%), Gaps = 9/438 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L + +T Y K G V + R LFD+M  K ++ WN +I GY+Q+GLA + L LF +M +  V
Sbjct: 191 LNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGV 250

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+  T V+VLS+C  +GA + G+ +   +E +     NV +  ALI+MY++CG+L  AR
Sbjct: 251 CPDPFTLVSVLSSCAHLGAKKIGQEVGELVE-ANGFAPNVFLSNALISMYARCGNLAKAR 309

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD +  K +V W +MI  Y MHG G+  L LF++M +  ++P    F+ +LSAC+H+G
Sbjct: 310 AVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSG 369

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           L ++G   F  MK EY +EP  EHY C+V+LL RAG+++EA + +  M +EPD  +WG L
Sbjct: 370 LTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGAL 429

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           LGAC++H N+ + E     +I     N G YVL+SNIY+   N +G+ R+R +M+E+  +
Sbjct: 430 LGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFR 489

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI-NGWLKAEGYVPQTQIVLHDIGE 402
           K+PG S +E   KVH FLAGD  H +++E++ ML+E+    ++  G +        D GE
Sbjct: 490 KKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDC------DRGE 543

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           +    + E HSE+LA+AFG++++ PGT I ++KNLRVC DCH   KL+SK   R+ ++RD
Sbjct: 544 EVSSTTRE-HSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRD 602

Query: 463 RNRFHHFVNGTCSCGDYW 480
            +RFH+F +G CSC DYW
Sbjct: 603 ASRFHYFKDGVCSCKDYW 620



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 7/307 (2%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDV--VCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           LT +++ Y K G V  AR +F++        VC+N +I GY  +   ++A  +FRRM   
Sbjct: 88  LTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKET 147

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
            V  + VT + ++  C     L  GR +H            V V  + I MY KCGS++ 
Sbjct: 148 GVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYS-EVAVLNSFITMYMKCGSVES 206

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
            R +FD +  K ++ WN++I GY+ +G   D L+LF +M    + P   T + +LS+CAH
Sbjct: 207 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAH 266

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
            G    G+     + +     P V     ++++ +R G + +A + V D+      V W 
Sbjct: 267 LGAKKIGQE-VGELVEANGFAPNVFLSNALISMYARCGNLAKA-RAVFDIMPVKSLVSWT 324

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGT-YVLLSNIYAAIGNWD-GVARVRTLMKE 339
            ++G   +HG    G  + + +I + +   G  +V++ +  +  G  D G+   R + +E
Sbjct: 325 AMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKRE 384

Query: 340 KGVQKEP 346
             ++  P
Sbjct: 385 YKLEPGP 391



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 128/312 (41%), Gaps = 53/312 (16%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
           WNV +   A   L  E++ L+R ML     P+  +   +L +C  +    SG+ +H ++ 
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV--NDKDVVVWNSMIVGYAMHGFGKD 192
                +    V TALI+MY KCG ++DAR VF+    + +  V +N++I GY  +    D
Sbjct: 78  RG-GCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACA-------------------------------- 220
           A  +F  M    +    +T +GL+  C                                 
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFIT 196

Query: 221 ---HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IE 274
                G V  GRR F+ M  +  I      +  +++  S+ G   +  +L   MK   + 
Sbjct: 197 MYMKCGSVESGRRLFDEMPVKGLIT-----WNAVISGYSQNGLAYDVLELFEQMKSSGVC 251

Query: 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGV 330
           PD     ++L +C   G   +G+++ E + +   A +   V LSN    +YA  GN    
Sbjct: 252 PDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPN---VFLSNALISMYARCGNLAKA 308

Query: 331 ARVRTLMKEKGV 342
             V  +M  K +
Sbjct: 309 RAVFDIMPVKSL 320



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 42/273 (15%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++++S +L+ +YAR G++  A  +F  MP +SLVS T M+ CY   G       LFDD  
Sbjct: 288 NVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDD-- 345

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                                        M+   + P+    V VLSAC   G  + G  
Sbjct: 346 -----------------------------MIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 376

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMH 187
           +   ++    ++   +  + L+++  + G L +A    D +  + D  VW +++    +H
Sbjct: 377 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIH 436

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--- 244
                A   F ++  I  +P +I +  L+S         EG      M  E A   K   
Sbjct: 437 KNVDMAELAFAKV--IEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 494

Query: 245 --VEHYGCMVNLLS---RAGQVEEAYKLVMDMK 272
             VEH G +   L+      Q EE ++++ +++
Sbjct: 495 SYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELE 527


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/436 (43%), Positives = 274/436 (62%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+K   + +A  +F  M +K+V+ W  M+ GY Q+G + EA+ +F  M    VE
Sbjct: 309 SALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVE 368

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P++ T  +V+S+C  + +LE G   H     S  I   + V  ALI +Y KCGS +++  
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISF-ITVSNALITLYGKCGSTENSHR 427

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +N +D V W +++ GYA  G   + + LF  M    LKP  +TFIG+LSAC+ AGL
Sbjct: 428 LFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGL 487

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V +G ++F +M  E+ I P V+H  C+++LL RAG++EEA   + +M   PD V W TLL
Sbjct: 488 VEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLL 547

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +CR+HG++ +G+  A+ LI+    N  +YVLLS++YA+ G WD VA++R  M++K V+K
Sbjct: 548 SSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRK 607

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           EPG S I+   KVH F A D   P   +IY  LE++N  +  EGYVP    VLHD+ E +
Sbjct: 608 EPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESE 667

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K   L  HSEKLA+AFGLI   PG  I+++KNLRVC DCH   K ISK T R+I++RD  
Sbjct: 668 KIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAV 727

Query: 465 RFHHFVNGTCSCGDYW 480
           RFH F +GTCSCGD+W
Sbjct: 728 RFHLFKDGTCSCGDFW 743



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 191/343 (55%), Gaps = 5/343 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +KF    D++V + LVD+Y + G +  A++ F  MP+R++V   TM+T   + G +  ++
Sbjct: 165 LKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQ 224

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF  ++E+D + W +MI G  Q+GL  EAL +FR M       ++ T  +VL+ACG + 
Sbjct: 225 RLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLL 284

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           AL  G+ IH+Y+  + + K NV VG+AL++MYSKC S+K A  VF R+  K+V+ W +M+
Sbjct: 285 ALGEGKQIHAYVIRTDH-KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAML 343

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
           VGY  +GF ++A+++F EM R  ++P D T   ++S+CA+   + EG + F+       +
Sbjct: 344 VGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGL 402

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
              +     ++ L  + G  E +++L  +M I  D V W  LL      G       + E
Sbjct: 403 ISFITVSNALITLYGKCGSTENSHRLFTEMNIR-DEVSWTALLAGYAQFGKANETIGLFE 461

Query: 302 YLISQNLANSG-TYV-LLSNIYAAIGNWDGVARVRTLMKEKGV 342
            +++  L   G T++ +LS    A     G+    +++KE G+
Sbjct: 462 RMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGI 504



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 180/398 (45%), Gaps = 73/398 (18%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           + ++S +L+  Y + G++  A  +F  +PQ +L S  T+L+ Y+K G ++  + +F+ M 
Sbjct: 39  ETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMP 98

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGR 127
            +D V WN+ I GYA +G  ++A+ +++ ML +  +  N +T   +L  C +   ++ GR
Sbjct: 99  FRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGR 158

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV----------- 176
            I+  I        +V VG+ L++MY+K G + DA+  FD + +++VV+           
Sbjct: 159 QINGQILKF-GFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRC 217

Query: 177 --------------------WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
                               W  MI G   +G  ++AL +F EM          TF  +L
Sbjct: 218 GMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVL 277

Query: 217 SACAHAGLVNEGRRFF---------------NTMKDEYA---------------IEPKVE 246
           +AC     + EG++                 + + D Y+                +  V 
Sbjct: 278 TACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVI 337

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
            +  M+    + G  EEA K+  +M+   +EPD    G+++ +C    N+A  E+ A++ 
Sbjct: 338 SWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSC---ANLASLEEGAQFH 394

Query: 304 ISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTLM 337
               ++   +++ +SN    +Y   G+ +   R+ T M
Sbjct: 395 CRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEM 432


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/436 (42%), Positives = 281/436 (64%), Gaps = 1/436 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            ++L+ Y    +    R  F+ M +K+ VCWN M+ GY+Q+ L NEAL LFR+ML++ +E
Sbjct: 556 VSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLE 615

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           P+E+   ++L AC Q+ AL  G+ +H +   +  ++ N  V  +L++MY+K G L  ++ 
Sbjct: 616 PDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMYAKSGFLGHSQR 674

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F+R+N K+V  WN MI G+ +HG G  A++LF +M R   +P   TF+G+L AC HAGL
Sbjct: 675 IFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGL 734

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           V+EG  +   M+  Y +EP++EHY C++++L RAG++ EA   + +M  EPD+ +W +LL
Sbjct: 735 VSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLL 794

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            +   + ++ +GEK AE L++     + +Y+LLSN+YA  G WD V  VR  MK+  +QK
Sbjct: 795 SSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQK 854

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
           + GCS IEL  KV+ F+AG+  +P S EI  M   +   +   GY P    VLH++ E +
Sbjct: 855 DVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVE 914

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L+ HSEK+A+ FG ++T+ GT+++I KNLR+C DCH   K ISK   R+I++RD  
Sbjct: 915 KRKILKGHSEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNK 974

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF  G CSCGDYW
Sbjct: 975 RFHHFKKGICSCGDYW 990



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 140/304 (46%), Gaps = 38/304 (12%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+    ++  Y+K G ++ A +LF  +E K VV WN MI  Y++ G   E   L R+M  
Sbjct: 348 LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWM 407

Query: 101 EK--VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           E+  +E NEVT + +L AC +   L S R +H Y     + +    +  A I  Y+KCGS
Sbjct: 408 EEELMEVNEVTILNLLPACLEESELLSLRALHGY-SLRHSFQYKELINNAFIAAYAKCGS 466

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L  A  VF  +N K V  WN++I G+A +G    AL  + EM R+ + P D + + LL A
Sbjct: 467 LVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLA 526

Query: 219 CAHAGLVNEGRR-----------------------FFNTMKDEYAIEPKVEHYG-----C 250
           C   GL+  G+                        +F+  K  Y      E  G     C
Sbjct: 527 CGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYG-RTYFERMGDKNSVC 585

Query: 251 MVNLLSRAGQVE---EAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
              +LS   Q E   EA  L   M    +EPD +   ++LGAC     + LG+++  + +
Sbjct: 586 WNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL 645

Query: 305 SQNL 308
             +L
Sbjct: 646 KNSL 649



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 134/246 (54%), Gaps = 8/246 (3%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKV 103
           T ++T Y+  G    +R++FD +  K++  WN ++ GY ++ L +EA+  F  +++  + 
Sbjct: 147 TRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEF 206

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  T   ++ AC     +  G+ +H  +     + +++ VG A+I +Y KCG L +A 
Sbjct: 207 QPDNFTFPCLIKACTGKCDIHLGKSVHG-MAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPSDITFIGLLSACAH 221
            +FD++ +++++ WNS+I G++ +GF  +A + F  +      L P   T + LL  C+ 
Sbjct: 266 ELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSG 325

Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL-W 280
            G V+ G    + M  +  +  ++     ++++ S+ G + EA   ++  KIE  SV+ W
Sbjct: 326 EGNVDVG-MVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEA--AILFRKIENKSVVSW 382

Query: 281 GTLLGA 286
            +++GA
Sbjct: 383 NSMIGA 388



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 3/173 (1%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  CGQ   +E GR +   +  S     +  + T LI MYS CG   ++RLVFDR+ +K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRF 231
           ++  WN+++ GY  +    +A+  F E+  +   +P + TF  L+ AC     ++ G+  
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS- 231

Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
            + M  +  +   +     M+ L  + G ++EA +L  D   E + + W +L+
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVEL-FDKMPEQNLISWNSLI 283



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 32/178 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            +K SL +D +V+ SL+D+YA+ G +  ++++F  +  + + S   M+T +   G+   A
Sbjct: 644 ALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKA 703

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
             LF+DM+  D                                +P+  T + VL AC   
Sbjct: 704 VELFEDMKRSD-------------------------------KQPDRFTFLGVLQACCHA 732

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVW 177
           G +  G    + ++    ++  ++    +I+M  + G L +A   + +   + D  +W
Sbjct: 733 GLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIW 790


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 291/438 (66%), Gaps = 3/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
            ++L+ Y + G  + ARVLFD +EEKD V WN MI GY+Q+GL  E+L LFR M ++K  
Sbjct: 413 VSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGG 472

Query: 105 --PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
             P+ + A + L AC ++ A+  G+ +H +   + ++  +  + +++I+MYSKCGS+ DA
Sbjct: 473 HWPSLLAATSALVACSELPAVRLGKEMHCFALKA-DLCEDSFLSSSIIDMYSKCGSVDDA 531

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
           R+ FDR+  KD V W  MI GYA++G GK+A+ L+++M R  ++P   T++GLL AC HA
Sbjct: 532 RVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHA 591

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           G++ +G  FF  M++   IE K+EHY C++ +LSRAG+  +A  L+  M  EPD+ +  +
Sbjct: 592 GMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSS 651

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +L AC +HG + LG+K+A+ L+      +  YVL SN+YA    WD + +VR ++++ GV
Sbjct: 652 VLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGV 711

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            KEPGCS I+++ KV+ F+AG+   P+  ++  M   +   ++A GY P T ++LH++ E
Sbjct: 712 AKEPGCSWIDIAGKVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEE 771

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K  +L  HSEK A+AFGL+ T   T +++ KN+R+C DCH   KLISK   R+I++RD
Sbjct: 772 EEKVEALRWHSEKQAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRD 831

Query: 463 RNRFHHFVNGTCSCGDYW 480
           + RFHHF +G CSCGDYW
Sbjct: 832 KKRFHHFRDGLCSCGDYW 849



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 132/284 (46%), Gaps = 47/284 (16%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKV 103
             ++  Y + G +  A  +FD +  K V  WN +I  +AQ+G A+ A+ LFR M  A   
Sbjct: 311 NALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQ 370

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P+  +  ++L ACG +  L  G+  H +I  +  ++ +  +  +L+++Y +CG    AR
Sbjct: 371 KPDWFSIGSLLLACGNLKHLLHGKAAHGFILRN-GLEKDSFIRVSLLSVYIQCGRESLAR 429

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK--PSDITFIGLLSACAH 221
           ++FD V +KD V WN+MI GY+ +G   ++LQLF EM   +    PS +     L AC+ 
Sbjct: 430 VLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSE 489

Query: 222 -----------------------------------AGLVNEGRRFFNTMKDEYAIEPKVE 246
                                               G V++ R FF+ +K + A+   V 
Sbjct: 490 LPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVM 549

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGAC 287
             G  VN     G+ +EA  L   M    +EPD   +  LL AC
Sbjct: 550 ITGYAVN-----GRGKEAVGLYDKMGREGMEPDGFTYLGLLMAC 588



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 126/294 (42%), Gaps = 47/294 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            VK   D    VS  LVD+YA+ G++  AE  F   P  +                    
Sbjct: 191 AVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGA-------------------- 230

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACG 118
                    ++VV WNVM+ GYA++G A  A  L R M  E+  V  +E+T ++VL  C 
Sbjct: 231 --------GRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCS 282

Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
            +  L   R +H+++           V  ALI  Y +CG L  A  VFD +  K V  WN
Sbjct: 283 GLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWN 342

Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG-LLSACAHA-----GLVNEGRRFF 232
           ++I  +A +G    A++LF EM     +  D   IG LL AC +      G    G    
Sbjct: 343 ALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILR 402

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQV--EEAYKLVMDMKIEPDSVLWGTLL 284
           N ++ +  I          V+LLS   Q   E   +++ D   E D V W T++
Sbjct: 403 NGLEKDSFIR---------VSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMI 447



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L A + + S +S ++++  Y+K G V  ARV FD ++ KD V W VMI GYA +G   EA
Sbjct: 504 LKADLCEDSFLS-SSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEA 562

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           + L+ +M  E +EP+  T + +L ACG  G LE G      + N   I+  ++    +I 
Sbjct: 563 VGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIG 622

Query: 152 MYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMHG 188
           M S+ G   DA  + + + ++ D  + +S++    MHG
Sbjct: 623 MLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHG 660



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 17/197 (8%)

Query: 75  WNVMIDGYAQHGLANEALVLFRRMLA--EKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
           WN ++   ++ G   +AL +  R+LA  + V P+  T    L +C      + GR +H+ 
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHAV 88

Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
                    +  VG +L++MY +CG + DA  VF+ +  +++V WN+++   A     + 
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADP---RR 145

Query: 193 ALQLFNEMCRIRL----KPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEH 247
            L+LF + C   L     P + T + +L  CA       GR      +K  +   P+V +
Sbjct: 146 GLELFRD-CLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSN 204

Query: 248 YGCMVNLLSRAGQVEEA 264
              +V++ ++ G++ +A
Sbjct: 205 V--LVDMYAKCGEMADA 219


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 290/473 (61%), Gaps = 2/473 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SLVD+Y + G      K+F +M  ++ V  T +++ YA  G    A  LF  M 
Sbjct: 139 DDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP 198

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVA-VLSACGQIGALESGR 127
            +++  W  +I G    G +  A+ LF  M  + V  ++   ++ V+     + A   GR
Sbjct: 199 GRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGR 258

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H        +  N+ VG ALI+MYSKC  +  AR VF+ +  +DV+ W +M+VG A H
Sbjct: 259 QLHGSTMRLGFLS-NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQH 317

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL L++ M     KP+++TF+GL+ AC+HAGLV +GR+ F +MK+EY I P+++H
Sbjct: 318 GRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQH 377

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C ++LLSR+G + EA +L+  M  EPD   WG LL AC  + +  +  +I++ L+   
Sbjct: 378 YTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELR 437

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +S TY+LLSN+YA  G WD VA+VR  M    ++KEPG S IE   +   F AG++  
Sbjct: 438 PKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPL 497

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
              +EI + LEE+   ++  GYVP T  V+HD+ E +K++ L +HSE+LAVAFGLI + P
Sbjct: 498 DVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPP 557

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G+ I++VKNLRVC DCH V KLIS+ T RKI++RD +RFHHF  G CSC ++W
Sbjct: 558 GSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 11/185 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKV 103
             +++ YAK   +  A  LFD+   +D+  ++ ++   +       AL + R ML A+ +
Sbjct: 42  AALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADAL 101

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+     +V S   ++ +   GR +H++   S     +V V ++L++MY KCGS  D R
Sbjct: 102 HPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV-VKSSLVDMYCKCGSPDDGR 160

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD ++ K+ VVW +++ GYA +G  ++ALQLF  M    L      +  L+S     G
Sbjct: 161 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALIS-----G 211

Query: 224 LVNEG 228
           LVN G
Sbjct: 212 LVNTG 216



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 101/218 (46%), Gaps = 34/218 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           T++     ++ V  +L+D+Y++  D+LSA ++F  +  R ++S TTM+   A+ G     
Sbjct: 264 TMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR---- 319

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                      A EAL L+ RM+    +PNEVT V ++ AC   
Sbjct: 320 ---------------------------AEEALALYDRMVLAGAKPNEVTFVGLIYACSHA 352

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ GR +   ++N   I   +Q  T  +++ S+ G L +A  L+     + D   W +
Sbjct: 353 GLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGA 412

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++     +   +  +++ +++  + L+P D +   LLS
Sbjct: 413 LLSACTKYKDAEMCIRISDKL--LELRPKDSSTYILLS 448


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/440 (42%), Positives = 278/440 (63%), Gaps = 1/440 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV+   ++  Y K G +  A  +F  M EK+V+ W+ MI  + Q+ LA+EAL+ F+ M  
Sbjct: 177 LVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQ 236

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E +E + +T V+VL A   +GALE G+ +H  I  +  +  ++ VG  L+NMY KCGS  
Sbjct: 237 EGMELDRITYVSVLDAYTSVGALELGKALHVRIVYA-GLDTSIVVGNTLVNMYGKCGSPD 295

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DAR VFD + +K+VV WN+M+  Y  +G  ++AL LF+ M    ++P+DITF+ +L  C+
Sbjct: 296 DARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCS 355

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H+G   +    F  M+ ++ I P+  H+GC++++L R+G++EEA +L+  M +  D+VLW
Sbjct: 356 HSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLW 415

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
            +LL AC  H +     + AE    +    +  Y++LSN+YAA+  WD  A+VR  M++ 
Sbjct: 416 TSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQA 475

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           GV+K+ G S IE+  +VHEF+AGD  HP    I+  L+ +   ++ +GY P  ++V+H +
Sbjct: 476 GVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSM 535

Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
            E++K   L  HSEKLAVAFG+ ST P T + IVKNLRVC DCH+  K IS   GR+I +
Sbjct: 536 EEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITV 595

Query: 461 RDRNRFHHFVNGTCSCGDYW 480
           RD NRFHHF  G CSCGDYW
Sbjct: 596 RDSNRFHHFDRGECSCGDYW 615



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 5/237 (2%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y K G +  A+ +FD M+ K+V  W +++ G+ Q G   EA+ LF RM  E   P+ V  
Sbjct: 86  YGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVAL 145

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           +  + +CG   AL  GR IHS    S  +  ++    A+INMY KCGS+ +A  VF R+ 
Sbjct: 146 LKFIDSCGAAKALSQGREIHS-AAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMP 204

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           +K+V+ W++MI  +  +    +AL  F  M +  ++   IT++ +L A    G +  G+ 
Sbjct: 205 EKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKA 264

Query: 231 FFNTMKDEYA-IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
               ++  YA ++  +     +VN+  + G  ++A + V D  +E + V W  +L A
Sbjct: 265 LH--VRIVYAGLDTSIVVGNTLVNMYGKCGSPDDA-RDVFDSMVEKNVVSWNAMLAA 318



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 3/174 (1%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           ++  C    ALE GR IH ++ +S  +     +   L++MY KCGSL +A+ VFD +  K
Sbjct: 47  LIRRCAGAKALEEGRRIHRWM-DSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHK 105

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           +V  W  ++ G+   G G +A+QLF+ MC+    P  +  +  + +C  A  +++GR   
Sbjct: 106 NVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE-I 164

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           ++      ++  +     ++N+  + G + EA+ +   M  E + + W T++ A
Sbjct: 165 HSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMP-EKNVISWSTMIAA 217



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 12/183 (6%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D Y S   ++L    G  L    ++A +   S+V   T++  Y K G    AR +FD M 
Sbjct: 251 DAYTSVGALEL----GKALHVRIVYAGL-DTSIVVGNTLVNMYGKCGSPDDARDVFDSMV 305

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           EK+VV WN M+  Y Q+G + EAL LF  M  E V PN++T V +L  C   G  +    
Sbjct: 306 EKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDA-- 363

Query: 129 IHSYIENSRNIKVN---VQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGY 184
           +  ++E  ++  +    V  G  LI+M  + G L++A  L+       D V+W S++   
Sbjct: 364 VSHFVEMRQDFGITPREVHFG-CLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCAC 422

Query: 185 AMH 187
             H
Sbjct: 423 VTH 425


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/472 (43%), Positives = 299/472 (63%), Gaps = 5/472 (1%)

Query: 12  VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
           V+ +  DL A R G  + A  +   +     V  T+++  Y+K G++  AR LFD + +K
Sbjct: 111 VAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQ-TSLVVLYSKCGQLDVARKLFDAIRDK 169

Query: 71  DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
            VV WN MI GY Q+GLA  A+ ++R M      P+  T VA LSAC Q GAL+ GR + 
Sbjct: 170 SVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVD 229

Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
             I + R +++NV +G AL+NMY++CG +  AR  F+ + +++VV W SMI GY MHG G
Sbjct: 230 KLIVSER-MEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHG 288

Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
            +A++LFN M +    P+D+TF+ +LSACAHAGLV+EGR  F +MK  Y + P+VEHY  
Sbjct: 289 GEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCS 348

Query: 251 MVNLLSRAGQVEEAYKLVMD-MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           MV++  RAG +++A + + D +  EP   +W  +LGAC++H +  LG ++AE LI+    
Sbjct: 349 MVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPE 408

Query: 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPK 369
           +    VLLSN+YA  G  + V +VR  M ++ ++K  G S IE++   H F  G+  HPK
Sbjct: 409 SPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPK 468

Query: 370 SKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGT 429
           + EIY  LE++   +   GYVP+T  VLH++ E++++ +L  H EKLAVAFGL+ T   T
Sbjct: 469 TSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCT 528

Query: 430 S-IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           + I+I+KNLR+C DCH   K +S    R+I++RD +RFHHF  G CSC +YW
Sbjct: 529 TPIRIIKNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 3/232 (1%)

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
           R+L       D   +  +    A+ GL   AL  +R +LA  +  +     +V  AC  +
Sbjct: 59  RLLAASHPAPDSFLFCSLTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADL 118

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
            A+ +G  IH++      +  N  V T+L+ +YSKCG L  AR +FD + DK VV WN+M
Sbjct: 119 SAIRAGMGIHAH-AVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAM 177

Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
           I GY  +G    A++++ EM      P   TF+  LSACA AG ++ GR+    +  E  
Sbjct: 178 ISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSER- 236

Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +E  V     +VN+ +R G V +A +   +M  E + V W +++    +HG+
Sbjct: 237 MEMNVVLGAALVNMYARCGLVNKAREW-FNMLQERNVVTWTSMIAGYGMHGH 287


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/437 (43%), Positives = 279/437 (63%), Gaps = 6/437 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  Y + G       +F++M +++VV WN +I G+A  G   E L  FR M  E +  +
Sbjct: 217 LLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFS 276

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
            +T   +L  C Q+ AL SG+ IH  I  SR    +V +  +L++MY+KCG +     VF
Sbjct: 277 WITLTTMLPVCAQVTALHSGKEIHGQILKSRK-NADVPLLNSLMDMYAKCGEIGYCEKVF 335

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
           DR++ KD+  WN+M+ G++++G   +AL LF+EM R  ++P+ ITF+ LLS C+H+GL +
Sbjct: 336 DRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTS 395

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           EG+R F+ +  ++ ++P +EHY C+V++L R+G+ +EA  +  ++ + P   +WG+LL +
Sbjct: 396 EGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNS 455

Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
           CRL+GN+AL E +AE L      N G YV+LSNIYA  G W+ V RVR +M   G++K+ 
Sbjct: 456 CRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDA 515

Query: 347 GCSSIELSNKVHEFLAG---DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           GCS I++ +K+H F+AG   D R   S E   +  E++  +K  GYVP T +VLHDI E+
Sbjct: 516 GCSWIQIKHKIHTFVAGGSSDFR--CSAEYKKIWNELSNAVKNLGYVPNTGVVLHDINEE 573

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
            K   +  HSE+LA  F LI+T  G  I+I KNLRVC DCH+  K +SK T R I++RD 
Sbjct: 574 MKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDT 633

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF NG+CSC DYW
Sbjct: 634 NRFHHFENGSCSCKDYW 650



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 140/303 (46%), Gaps = 6/303 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLF--DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
           T ++T Y+  G V  AR +F  DD +  +   W  M  GY+++G ++EAL+L+R ML+  
Sbjct: 111 TKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCC 170

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           V+P        L AC  +     GR IH+ I      + +  V  AL+ +Y + G   + 
Sbjct: 171 VKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEV 230

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ +  ++VV WN++I G+A  G   + L  F  M R  +  S IT   +L  CA  
Sbjct: 231 LKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQV 290

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
             ++ G+     +         V     ++++ ++ G++    K V D     D   W T
Sbjct: 291 TALHSGKEIHGQILKSRK-NADVPLLNSLMDMYAKCGEIGYCEK-VFDRMHSKDLTSWNT 348

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSG-TYV-LLSNIYAAIGNWDGVARVRTLMKEK 340
           +L    ++G I     + + +I   +  +G T+V LLS    +    +G      +M++ 
Sbjct: 349 MLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDF 408

Query: 341 GVQ 343
           GVQ
Sbjct: 409 GVQ 411



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 77/146 (52%), Gaps = 1/146 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           L +++  YAK GE+     +FD M  KD+  WN M+ G++ +G  +EAL LF  M+   +
Sbjct: 315 LNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGI 374

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           EPN +T VA+LS C   G    G+ + S +     ++ +++    L+++  + G   +A 
Sbjct: 375 EPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEAL 434

Query: 164 LVFDRVNDKDV-VVWNSMIVGYAMHG 188
            V + +  +    +W S++    ++G
Sbjct: 435 SVAENIPMRPSGSIWGSLLNSCRLYG 460



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 6/210 (2%)

Query: 114 LSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           L AC    +LE GR +H ++  S+N +  N  + T LI +YS CG + +AR VF   ++K
Sbjct: 77  LHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEK 136

Query: 173 --DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
             +  VW +M +GY+ +GF  +AL L+ +M    +KP +  F   L AC+       GR 
Sbjct: 137 PPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRA 196

Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
               +      E        ++ L    G  +E  K+  +M  + + V W TL+      
Sbjct: 197 IHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMP-QRNVVSWNTLIAGFAGQ 255

Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNI 320
           G +   E ++ + + Q      +++ L+ +
Sbjct: 256 GRVF--ETLSAFRVMQREGMGFSWITLTTM 283


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/450 (42%), Positives = 287/450 (63%), Gaps = 22/450 (4%)

Query: 47   MLTCYAKQGEVAAA--RVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
            +++ YA+ G   AA  R +FD+M    +D+V WN ++  +AQ+GLA +AL L+RRM + +
Sbjct: 613  LMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPE 672

Query: 103  ---VEPNEVTAVAVLSACGQIGALESGRWIHSYI-ENSRNIKVNVQVGTALINMYSKCGS 158
               VEP+ VT V VLS+   +GA   G     Y+ +     + NVQ+  ALIN +++CGS
Sbjct: 673  GSGVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGS 732

Query: 159  LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
            L  A+ +FD +  K +V W ++I G+ MHG G  A+ LF  M    + P ++  +G+LSA
Sbjct: 733  LPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSA 792

Query: 219  CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
            C+HAGL +EGR +F+TM+  Y + P +EHY C+V+LL RAG++EEA +L+  M +  D  
Sbjct: 793  CSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGA 852

Query: 279  LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
            +WG LLGAC++H N+ +GE+    ++     N G YVL+SNIY   G  D VARVR +M+
Sbjct: 853  VWGALLGACKIHKNVEIGEEAFARVVELEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMR 912

Query: 339  EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIY-------MMLEEINGWLKAEGYVP 391
            ++G++KEPGCS +E + +VH F+A D  HP+++ IY       +M++E +G  ++   VP
Sbjct: 913  KRGLKKEPGCSYVEHNGRVHLFMADDHSHPQARRIYELVTRLELMVKEKSGVRESVVAVP 972

Query: 392  QTQIVLHDIGEKQKQNSL-EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLI 450
            + ++      EK+    L   HSEKLAVAFGL++T+ G+ I ++KNLRVC DCH+  K +
Sbjct: 973  KGRM------EKEAAQPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKAV 1026

Query: 451  SKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            S  T R  ++RD +RFH F  G CSC DYW
Sbjct: 1027 SATTNRSFLVRDASRFHRFDGGVCSCKDYW 1056



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 30/292 (10%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV------VCWNVMIDGYAQHGLAN 89
           +P      L+ +LT Y++ G +  A  L D+   +          +N +I G A+H L  
Sbjct: 499 LPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISGCARHSLPV 558

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
               LFRRM A  V  + VT +A++ A      L     +H+ +     +     V   L
Sbjct: 559 ACFALFRRMRAIAVRFDAVTLLALVPA----APLSVVPQVHA-LAAQVGLATETSVANCL 613

Query: 150 INMYSKCGSLKD--ARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR- 204
           ++ Y++ G+     AR VFD +    +D+V WN+++  +A +G   DAL L+  M     
Sbjct: 614 MSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEG 673

Query: 205 --LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE------PKVEHYGCMVNLLS 256
             ++P  +T +G+LS+ AH G    G   F+   + Y ++        V+    ++N  +
Sbjct: 674 SGVEPDAVTIVGVLSSAAHLGARGVG---FDA--EHYVVQRLPGFRTNVQLCNALINFHA 728

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           R G +  A +L  +M  +   V W  L+    +HGN  +   + E ++S+ +
Sbjct: 729 RCGSLPRAQQLFDEMPAK-SIVSWTALITGHGMHGNGGVAVSLFERMVSEGI 779



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 99/210 (47%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ +  +L++ +AR G +  A++LF  MP +S+VS T ++T                   
Sbjct: 716 NVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALIT------------------- 756

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                       G+  HG    A+ LF RM++E + P+ V  V VLSAC   G  + GR 
Sbjct: 757 ------------GHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRM 804

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             S +E+   ++  ++  T ++++  + G L++AR L+       D  VW +++    +H
Sbjct: 805 YFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIH 864

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              +   + F  +  + L+P ++ +  L+S
Sbjct: 865 KNVEIGEEAFARV--VELEPRNVGYYVLMS 892


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/438 (43%), Positives = 276/438 (63%), Gaps = 4/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-- 102
           ++++  YAK G+V  AR +FD+M  K+VV W+ MI GY+Q GL  EAL LF+R L +   
Sbjct: 147 SSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYD 206

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
           +  N+ T  +VL  C      E G+ +H     + +   +  V ++LI++YSKCG ++  
Sbjct: 207 IRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKT-SFDSSCFVASSLISLYSKCGVVEGG 265

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF+ V  +++ +WN+M++  A H       +LF EM R+ +KP+ ITF+ LL AC+HA
Sbjct: 266 YKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHA 325

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV +G   F  MK E+ IEP  +HY  +V+LL RAG++EEA  ++ +M ++P   +WG 
Sbjct: 326 GLVEKGEHCFGLMK-EHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGA 384

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL  CR+HGN  L   +A+ +      +SG  VLLSN YAA G W+  AR R +M+++G+
Sbjct: 385 LLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMMRDQGI 444

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +KE G S +E  N+VH F AGD  H K++EIY  LEE+   +   GYV  T  VL ++  
Sbjct: 445 KKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVLKEVDG 504

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
            +K  ++  HSE+LA+AFGLI+  P   I+++KNLRVC DCH   K ISK TGR I++RD
Sbjct: 505 DEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRD 564

Query: 463 RNRFHHFVNGTCSCGDYW 480
            NRFH F +G C+CGDYW
Sbjct: 565 NNRFHRFEDGKCTCGDYW 582



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 16/308 (5%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y+K     ++  LFD    K    W+ +I  +AQ+ L   AL  FRRML   + P+
Sbjct: 48  LINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPD 107

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           + T      +   + +L     +H+    + +   +V VG++L++ Y+KCG +  AR VF
Sbjct: 108 DHTLPTAAKSVAALSSLPLALSLHALSLKTAHHH-DVFVGSSLVDTYAKCGDVNLARKVF 166

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGL 224
           D +  K+VV W+ MI GY+  G  ++AL LF         ++ +D T   +L  C+ + L
Sbjct: 167 DEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTL 226

Query: 225 VNEGRRF----FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
              G++     F T  D             +++L S+ G VE  YK+  ++K+  +  +W
Sbjct: 227 FELGKQVHGLCFKTSFDSSCFVAS-----SLISLYSKCGVVEGGYKVFEEVKVR-NLGMW 280

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
             +L AC  H +     ++ E +    +  N  T++ L    +  G  +       LMKE
Sbjct: 281 NAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKE 340

Query: 340 KGVQKEPG 347
            G+  EPG
Sbjct: 341 HGI--EPG 346



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 5/208 (2%)

Query: 33  FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92
           F T    S    +++++ Y+K G V     +F++++ +++  WN M+   AQH       
Sbjct: 238 FKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTF 297

Query: 93  VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALIN 151
            LF  M    V+PN +T + +L AC   G +E G   H + +     I+   Q    L++
Sbjct: 298 ELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGE--HCFGLMKEHGIEPGSQHYATLVD 355

Query: 152 MYSKCGSLKDARLVFDRVNDKDV-VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           +  + G L++A LV   +  +    VW +++ G  +HG  + A  + +++  +    S I
Sbjct: 356 LLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGI 415

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDE 238
             + L +A A AG   E  R    M+D+
Sbjct: 416 QVL-LSNAYAAAGRWEEAARARKMMRDQ 442


>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Brachypodium distachyon]
          Length = 648

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/443 (41%), Positives = 284/443 (64%), Gaps = 11/443 (2%)

Query: 47  MLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLA---E 101
           +++ YA++G  A AR +FD+M    +D+V WN ++  ++Q+GLA +AL L+ RM      
Sbjct: 208 LISVYARRG-AALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGH 266

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLK 160
            VEP+ VT V+VLS+C  +GA   G  +  Y+       + NVQ+  ALIN Y++CG L 
Sbjct: 267 GVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLP 326

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+ +F+ +  K +V W ++I GY MHG G+ A+ LF  M    ++P ++  +GLLSAC+
Sbjct: 327 QAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACS 386

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           HAG+ +EGR++F+ M+  Y + P +EHY CMV+LL RAG+++EA +L+  M +  D  +W
Sbjct: 387 HAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVW 446

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
           G LLGAC++H N+ +GE+  E++I     N G YVL++NIY   G  D V RVR +M+E+
Sbjct: 447 GALLGACKIHKNVEIGEEAFEHVIEVEPTNVGYYVLMANIYTDTGQLDCVVRVRAMMRER 506

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL--KAEGYVP-QTQIVL 397
           G++KEPGCS +E   +VH F+A D  HP++K IY ++ ++   +  K +G V  Q   ++
Sbjct: 507 GLKKEPGCSYVEHKGRVHLFMADDHSHPQAKRIYELVLKLEQMVKEKTDGTVGIQGGRMI 566

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
               EK     +  HSEKLAVAFG+++T  G+ I ++KNLRVC +CH+  K +S    R 
Sbjct: 567 EGHSEKTAVPLIGFHSEKLAVAFGMLNTV-GSEIAVIKNLRVCGNCHSFLKTVSAIANRV 625

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
            ++RD +RFH F +G CSC DYW
Sbjct: 626 FLVRDASRFHRFEDGACSCKDYW 648



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 19/285 (6%)

Query: 36  MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME----EKDVVC--WNVMIDGYAQHGLAN 89
           +P      ++ +L+ Y++ G +  A  L D+M         +C  +N +I G A H L  
Sbjct: 94  LPSSDAYLVSALLSSYSRLGLLPCAHQLLDEMPLASTPPATLCTAFNSLISGCALHALPA 153

Query: 90  EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149
               LFRRM    V  + VT + ++ A     A  S       +     +     V   L
Sbjct: 154 ACFALFRRMRVAGVRFDAVTLLTLVPA-----APPSVVPQLHALAARAGLAAETSVANCL 208

Query: 150 INMYSKCGSLKDARLVFDRVN--DKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIR- 204
           I++Y++ G+   AR VFD +    +D+V WN+++  ++ +G   DAL L++ M  C    
Sbjct: 209 ISVYARRGA-ALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHG 267

Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEE 263
           ++P  +T + +LS+CAH G  + G      M+ +       V+    ++N  +R G + +
Sbjct: 268 VEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQ 327

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
           A +L  +M  +   V W  L+    +HG+  +   + + ++S+ +
Sbjct: 328 AQQLFNEMPRK-SIVSWTALITGYGMHGHGEVAINLFQTMVSEGI 371



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 102/210 (48%), Gaps = 34/210 (16%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           ++ +  +L++ YAR G +  A++LF  MP++S+VS T ++T                   
Sbjct: 308 NVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALIT------------------- 348

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
                       GY  HG    A+ LF+ M++E + P+ V  V +LSAC   G  + GR 
Sbjct: 349 ------------GYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRK 396

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSMIVGYAMH 187
             S +E++  ++  ++  T ++++  + G LK+AR L+       D  VW +++    +H
Sbjct: 397 YFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWGALLGACKIH 456

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
              +   + F  +  I ++P+++ +  L++
Sbjct: 457 KNVEIGEEAFEHV--IEVEPTNVGYYVLMA 484


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/421 (44%), Positives = 275/421 (65%), Gaps = 5/421 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q S+   + ++  YA+ G + AA++ FD M  K  V WN +I G+A+ G    AL L  +
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  +  +P   T  +V SAC  IGALE G+W+H+++  S  +K+   +G  L++MY+K G
Sbjct: 281 MQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKS-GLKLIAFIGNTLLDMYAKAG 339

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           S+ DA+ VFDR+   DVV WN+M+ G A HG GK+ L  F +M RI ++P++I+F+ +L+
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDS 277
           AC+H+GL++EG  +F  MK +Y +EP V HY   V+LL R G ++ A + + +M IEP +
Sbjct: 400 ACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337
            +WG LLGACR+H N+ LG   AE     +  +SG  +LLSNIYA+ G W  VA+VR +M
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMM 518

Query: 338 KEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVL 397
           KE GV+K+P CS +E+ N VH F+A D  HP+ KEI    EEI+G +K  GYVP T  VL
Sbjct: 519 KESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVL 578

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK---FT 454
             + +++++  L+ HSEKLA+AF L++T  G+ I+I KN+RVC DCHA  K +SK   F+
Sbjct: 579 LFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKIYEFS 638

Query: 455 G 455
           G
Sbjct: 639 G 639



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 143/252 (56%), Gaps = 5/252 (1%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           LV    ++  YAK G +  AR +FD+M  KD+V W  +I G++Q+    +AL+LF +ML 
Sbjct: 123 LVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR 182

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++PN  T  ++L A G    L+ G  +H++       + +V VG+AL++MY++CG + 
Sbjct: 183 LGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLK-YGYQSSVYVGSALVDMYARCGHMD 241

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A+L FD +  K  V WN++I G+A  G G+ AL L  +M R   +P+  T+  + SACA
Sbjct: 242 AAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACA 301

Query: 221 HAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
             G + +G+     M K    +   + +   ++++ ++AG +++A K V D  ++PD V 
Sbjct: 302 SIGALEQGKWVHAHMIKSGLKLIAFIGN--TLLDMYAKAGSIDDA-KRVFDRLVKPDVVS 358

Query: 280 WGTLLGACRLHG 291
           W T+L  C  HG
Sbjct: 359 WNTMLTGCAQHG 370



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
           +L  C ++G +E GR +H+++ +S  +  ++ +   ++NMY+KCG L DAR +FD +  K
Sbjct: 93  LLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
           D+V W ++I G++ +   +DAL LF +M R+ L+P+  T   LL A      ++ G +  
Sbjct: 153 DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQ-L 211

Query: 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
           +    +Y  +  V     +V++ +R G ++ A +L  D       V W  L+     H  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAA-QLAFDGMPTKSEVSWNALISG---HAR 267

Query: 293 IALGEKIAEYLISQNLAN-SGTYVLLSNIYAA 323
              GE     L      N   T+   S++++A
Sbjct: 268 KGEGEHALHLLWKMQRKNFQPTHFTYSSVFSA 299


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 281/435 (64%), Gaps = 1/435 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           +++T YA   ++  A  +F++   K+VV W  ++  Y  +    +AL +F  M      P
Sbjct: 242 SLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALP 301

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           N+ T    L AC  + AL+ G+ IH+ +     ++ +V VG +L+ MY++CG++  A  V
Sbjct: 302 NQSTFSITLKACCGLEALDKGKEIHT-MAIKLGLETDVFVGNSLVVMYTECGNVNSAVAV 360

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           F  +N+KD+V WNS+IVG A HGFG  AL  FN+M R  + P++ITF GLLSAC+ +G++
Sbjct: 361 FRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGML 420

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
            +GR FF  +    +   + +HY CMV++L R G+++EA +LV  M ++ +S++W  LL 
Sbjct: 421 LKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLS 480

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
           ACR+H N+ + E+ A++++      S  YVLLSNIYA+ G W  V+R+R  MK+ G+ K+
Sbjct: 481 ACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQ 540

Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
           PG S + L  K HEFL+ D  HP S+ IY  L+ +   LK  GYVP  +  LHD+ ++QK
Sbjct: 541 PGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQK 600

Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
           +  L  HSE+LA+AFGL+ST  G++I ++KNLRVC DCH+V KL+SK  GRKI++RD  R
Sbjct: 601 EEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGR 660

Query: 466 FHHFVNGTCSCGDYW 480
           FHHF NG CSC DYW
Sbjct: 661 FHHFKNGICSCSDYW 675



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 142/289 (49%), Gaps = 11/289 (3%)

Query: 7   DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
           +K++   T++V+ Y + G V  A++LF  M  + + +   M+  Y + G V     LF++
Sbjct: 102 EKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEE 161

Query: 67  MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
           M  +DV+ W  MI G   +G + EAL +F++ML   VEP   T   VLSAC        G
Sbjct: 162 MPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLG 221

Query: 127 RWIHSYIENSRNIKVNV----QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
             +H ++     +K+       +  +LI  Y+ C  ++ A  +F+    K+VV W +++ 
Sbjct: 222 VQVHGHV-----VKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLT 276

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y  +   +DAL++F +M ++   P+  TF   L AC     +++G+   +TM  +  +E
Sbjct: 277 AYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKE-IHTMAIKLGLE 335

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             V     +V + +  G V  A  +  ++  E D V W +++     HG
Sbjct: 336 TDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNSIIVGSAQHG 383



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 60/287 (20%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           +L++ T ++  Y R   +  A KLF  M  R +VS  +M+      G +  A  LFD+M 
Sbjct: 42  NLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMP 101

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
           EK+V+ W  M++GY + G    A  LF  M         V  VA  +A            
Sbjct: 102 EKNVISWTTMVNGYLKFGRVELAQRLFLDM--------HVKDVAAWNAM----------- 142

Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
           +H Y EN R     V+ G  L                F+ +  +DV+ W SMI G  ++G
Sbjct: 143 VHGYFENGR-----VEEGVRL----------------FEEMPVRDVISWTSMIGGLDLNG 181

Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
             ++AL +F +M R  ++P+  TF  +LSACA+A   N G +          +   V   
Sbjct: 182 KSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQ----------VHGHVVKL 231

Query: 249 GC---------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           GC         ++   +   ++E A+K + +  +  + V W  LL A
Sbjct: 232 GCFFHEFISVSLITFYANCMKIEHAHK-IFNETLTKNVVKWTALLTA 277



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 31/161 (19%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K  L+ D++V  SLV +Y   G+V SA  +F  + ++ +VS                  
Sbjct: 330 IKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS------------------ 371

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                        WN +I G AQHG    AL+ F +M+   V+PNE+T   +LSAC + G
Sbjct: 372 -------------WNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSG 418

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
            L  GR    YI   ++  +  Q    ++++  +CG L +A
Sbjct: 419 MLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEA 459


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/479 (40%), Positives = 294/479 (61%), Gaps = 16/479 (3%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +KF   +D ++ +SLV++Y + G + +A  +   +P   L +    +TC     E+ A  
Sbjct: 549  LKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTC----KELKAG- 603

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                      +V W +M+ GY  +G   + L  FR M+ E V  +  T   ++SAC   G
Sbjct: 604  ----------IVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAG 653

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             LE GR +H+Y  +    +++  VG++LI+MYSK GSL DA  +F + N+ ++V W SMI
Sbjct: 654  ILEFGRHVHAY-NHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMI 712

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             G A+HG GK A+ LF EM    + P+++TF+G+L+AC HAGL+ EG R+F  MKD Y I
Sbjct: 713  SGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCI 772

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P VEH   MV+L  RAG + E    + +  I   + +W + L +CRLH N+ +G+ ++E
Sbjct: 773  NPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSE 832

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L+    ++ G YVLLSN+ A+   WD  ARVR+LM ++G++K+PG S I+L +++H F+
Sbjct: 833  MLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFI 892

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             GD  HP+ +EIY  L+ + G LK  GY    ++V+ D+ E+Q +  +  HSEKLAV FG
Sbjct: 893  MGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFG 952

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            +I+T   T I+I+KNLR+C DCH   K  S+   R+I++RD +RFHHF +G CSCGDYW
Sbjct: 953  IINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 167/354 (47%), Gaps = 26/354 (7%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
           +D D+ +  S++DLY +      AE++F  M +  +VS   M++ Y + G+V  +  +F 
Sbjct: 421 IDADVVLGNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFR 480

Query: 66  DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
            +  KDVV WN ++DG  Q G   +AL     M+    E + VT    L     +  +E 
Sbjct: 481 RLPYKDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVEL 540

Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN--------------- 170
           GR +H  +      +    + ++L+ MY KCG + +A +V   V                
Sbjct: 541 GRQLHGMVLKFGFCRDGF-IRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKE 599

Query: 171 -DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEG 228
               +V W  M+ GY  +G  +D L+ F  M R  L   DI T   ++SACA+AG++  G
Sbjct: 600 LKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVR-ELVVVDIRTVTTIISACANAGILEFG 658

Query: 229 RRFFNTMKDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
           R   +     + I  +++ Y    ++++ S++G +++A+ +      EP+ V W +++  
Sbjct: 659 R---HVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTN-EPNIVFWTSMISG 714

Query: 287 CRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
           C LHG       + E +++Q  + N  T++ + N     G  +   R   +MK+
Sbjct: 715 CALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKD 768



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 1/162 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           ++L S   +LT Y K   +  AR LFD++ +++   W ++I G+++ G +     LFR M
Sbjct: 322 QTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREM 381

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
            A+   PN+ T  ++   C     L+ G+ +H+++  +  I  +V +G +++++Y KC  
Sbjct: 382 RAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRN-GIDADVVLGNSILDLYLKCKV 440

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200
            + A  VF+ +N+ DVV WN MI  Y   G  + +L +F  +
Sbjct: 441 FEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRL 482



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 31/166 (18%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           L+ +Y K  ++  AR +FD +  ++   W  +I G++  G  +   +LF EM      P+
Sbjct: 330 LLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPN 389

Query: 209 DITFIGLLSACA-----------HAGLVNEGRR----FFNTMKD--------EYA----- 240
             T   L   C+           HA ++  G        N++ D        EYA     
Sbjct: 390 QYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFE 449

Query: 241 --IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
              E  V  +  M++   RAG VE++  +   +  + D V W T++
Sbjct: 450 LMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYK-DVVSWNTIV 494


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/438 (44%), Positives = 287/438 (65%), Gaps = 4/438 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
            +++  Y K GE+  A  +F+ M+EK V  W+ +I  +A   + NE L+L  +M +E + 
Sbjct: 137 NSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRC 196

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDA 162
              E T V VLSAC  +G+ + G+ IH  +   RNI ++NV V T+LI+MY K G L+  
Sbjct: 197 RVEESTLVNVLSACTHLGSPDLGKCIHGIL--LRNISELNVVVKTSLIDMYVKSGCLEKG 254

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             VF  +++K+   +  MI G A+HG GK+AL++F+EM    L P D+ ++G+ SAC+HA
Sbjct: 255 LRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHA 314

Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
           GLV EG + F +M+ E+ IEP V+HYGCMV+LL R G ++EAY+L+  M I+P+ V+W +
Sbjct: 315 GLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRS 374

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC++H N+ +G+  AE L   N  NSG Y++L+N+YA    WD VA++RT + E+ +
Sbjct: 375 LLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNL 434

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
            + PG S IE   KV++F++ D   P+   IY M+ ++   LK EGY+P T  VL D+ +
Sbjct: 435 VQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDD 494

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
           ++K+  L+ HS+KLA+AFGLI T  G+ ++I +NLR+C DCH   K IS    R+I +RD
Sbjct: 495 EEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRD 554

Query: 463 RNRFHHFVNGTCSCGDYW 480
           R RFHHF NG+CSC DYW
Sbjct: 555 RLRFHHFKNGSCSCKDYW 572



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)

Query: 26  VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH 85
           VL     F T    +LV+ T  LT   K G +  A  +F  ++E     +N MI G    
Sbjct: 21  VLKCGIFFDTFCMSNLVA-TCALT---KWGSMDYACSIFTQIDEPSSFDYNTMIRGNVND 76

Query: 86  GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145
               EAL+L+  M+   VEP++ T   VL AC  +G ++ G  +H ++     ++ +V V
Sbjct: 77  MKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHV-FKMGLEGDVIV 135

Query: 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC---R 202
             +LINMY KCG +K+A  VF+ +++K V  W+++I  +A      + L L  +M    R
Sbjct: 136 QNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGR 195

Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
            R++ S  T + +LSAC H G  + G+     +    + E  V     ++++  ++G +E
Sbjct: 196 CRVEES--TLVNVLSACTHLGSPDLGKCIHGILLRNIS-ELNVVVKTSLIDMYVKSGCLE 252

Query: 263 EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309
           +  ++  +M  E +   +  ++    +HG      K+   +I + LA
Sbjct: 253 KGLRVFKNMS-EKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLA 298



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L   + + ++V  T+++  Y K G +     +F +M EK+   + VMI G A HG   EA
Sbjct: 226 LLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEA 285

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           L +F  M+ E + P++V  V V SAC   G +E G      ++    I+  VQ    +++
Sbjct: 286 LKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVD 345

Query: 152 MYSKCGSLKDARLVFDRVNDK-DVVVWNSMIVGYAMH 187
           +  + G LK+A  +   ++ K + V+W S++    +H
Sbjct: 346 LLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVH 382


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/479 (43%), Positives = 292/479 (60%), Gaps = 4/479 (0%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           K +L   L    SL DL  R G  L  +++ A   Q  +V  T ++  Y K G + AA  
Sbjct: 162 KVTLVSGLDACASLGDL--RSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVE 218

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
            F  + EK+VV W+ +   YA++    +A+ +  RM  E + PN  T V+VL AC  I A
Sbjct: 219 AFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAA 278

Query: 123 LESGRWIHSYIEN-SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
           L+ GR IH   +     ++ +V V TAL+NMYSKCG+L  A  +FD++   D+V+WNS+I
Sbjct: 279 LKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLI 338

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
              A HG  + AL+LF  M    L+P+ ITF  +L AC+HAG++++GR+ F +   ++ I
Sbjct: 339 ATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGI 398

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            P+ EH+GCMV+LL RAG + ++  L++ M  EP  V W   LGACR + N+      AE
Sbjct: 399 FPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAE 458

Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
            L   +      YVLLSN+YA  G W  VAR+R  M+     KE G S IE+ ++VHEF+
Sbjct: 459 NLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFI 518

Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
           +GDL HP+  EI+  L+ +   +K  GYVP T++VLHD+ ++ K+  +  HSEKLA+AF 
Sbjct: 519 SGDLDHPRIGEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFA 578

Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           L++T  G+ I++VKNLRVC DCH   K ISK   R+I++RD NRFH F NG CSCGDYW
Sbjct: 579 LLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 3/249 (1%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           T +++ Y K G    A  +F  M  +DVV W+ M+  YA++G   EAL LFR+M  + V 
Sbjct: 100 TALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVA 159

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PN+VT V+ L AC  +G L SG  +H  +E ++ I+  V VGTAL+N+Y KCG ++ A  
Sbjct: 160 PNKVTLVSGLDACASLGDLRSGALMHQRVE-AQGIQSGVVVGTALVNLYGKCGRIEAAVE 218

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F ++ +K+VV W+++   YA +   +DA+++ + M    L P+  TF+ +L ACA    
Sbjct: 219 AFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAA 278

Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
           + +GRR    T      +E  V     +VN+ S+ G +  A  +  D     D VLW +L
Sbjct: 279 LKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDM-FDKIAHLDLVLWNSL 337

Query: 284 LGACRLHGN 292
           +     HG 
Sbjct: 338 IATNAQHGQ 346



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 3/240 (1%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ML+ Y++ G + A R  FD+M   D+V WN +I  Y  +   +   + FR ML + + P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
           EV     LSAC     +  GR I   I  +  I+    V TAL++MY K G   DA  VF
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGT-GIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
            R++ +DVV W++M+  YA +G  ++AL LF +M    + P+ +T +  L ACA  G + 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
            G      ++ +  I+  V     +VNL  + G++E A +    + +E + V W  +  A
Sbjct: 180 SGALMHQRVEAQ-GIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAA 237


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 290/473 (61%), Gaps = 2/473 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SLVD+Y + G      K+F +M  ++ V  T +++ YA  G    A  LF  M 
Sbjct: 221 DDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMP 280

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVA-VLSACGQIGALESGR 127
            +++  W  +I G    G +  A+ LF  M  + V  ++   ++ V+     + A   GR
Sbjct: 281 GRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGR 340

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H        +  N+ VG ALI+MYSKC  +  AR VF+ +  +DV+ W +M+VG A H
Sbjct: 341 QLHGSTMRLGFLS-NMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQH 399

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL L++ M     KP+++TF+GL+ AC+HAGLV +GR+ F +MK+EY I P+++H
Sbjct: 400 GRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQH 459

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C ++LLSR+G + EA +L+  M  EPD   WG LL AC  + +  +  +I++ L+   
Sbjct: 460 YTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELR 519

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +S TY+LLSN+YA  G WD VA+VR  M    ++KEPG S IE   +   F AG++  
Sbjct: 520 PKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPL 579

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
              +EI + LEE+   ++  GYVP T  V+HD+ E +K++ L +HSE+LAVAFGLI + P
Sbjct: 580 DVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPP 639

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G+ I++VKNLRVC DCH V KLIS+ T RKI++RD +RFHHF  G CSC ++W
Sbjct: 640 GSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 11/185 (5%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKV 103
             +++ YAK   +  A  LFD+   +D+  ++ ++   +       AL + R ML A+ +
Sbjct: 124 AALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADAL 183

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
            P+     +V S   ++ +   GR +H++   S     +V V ++L++MY KCGS  D R
Sbjct: 184 HPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDV-VKSSLVDMYCKCGSPDDGR 242

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD ++ K+ VVW +++ GYA +G  ++ALQLF  M    L      +  L+S     G
Sbjct: 243 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALIS-----G 293

Query: 224 LVNEG 228
           LVN G
Sbjct: 294 LVNTG 298



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 101/218 (46%), Gaps = 34/218 (15%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           T++     ++ V  +L+D+Y++  D+LSA ++F  +  R ++S TTM+   A+ G     
Sbjct: 346 TMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR---- 401

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                      A EAL L+ RM+    +PNEVT V ++ AC   
Sbjct: 402 ---------------------------AEEALALYDRMVLAGAKPNEVTFVGLIYACSHA 434

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
           G ++ GR +   ++N   I   +Q  T  +++ S+ G L +A  L+     + D   W +
Sbjct: 435 GLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGA 494

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
           ++     +   +  +++ +++  + L+P D +   LLS
Sbjct: 495 LLSACTKYKDAEMCIRISDKL--LELRPKDSSTYILLS 530


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/479 (41%), Positives = 288/479 (60%), Gaps = 32/479 (6%)

Query: 2    VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
            +K   + +L+V  +L+DLYA+  D+ S+ ++F+++                         
Sbjct: 760  IKIGHESELFVGNALIDLYAKCSDMESSLEIFSSL------------------------- 794

Query: 62   VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                D+ E   V WN +I GY++ G    AL +FR M A  V   +VT  +VL AC    
Sbjct: 795  ---RDVNE---VSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTA 848

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            ++     +H  IE S     +  V  +LI+ Y+KCG ++DAR +F+ + + D+V WN++I
Sbjct: 849  SINHVGQVHCLIEKS-TFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAII 907

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             GYA+HG    A +LF+ M +  +K +DITF+ LLS C   GLV++G   F++M+ ++ I
Sbjct: 908  SGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGI 967

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            EP +EHY C+V LL RAG++ +A   + D+   P +++W  LL +C +H N+ LG   AE
Sbjct: 968  EPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAE 1027

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             ++     +  TYVLLSN+Y+A G+ D VA  R  M+  GV+KEPG S +E+  +VH F 
Sbjct: 1028 KVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFS 1087

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
             G   HP  + I  MLE +N     EGYVP T  VLHD+ E+QK   L VHSE+LA+A+G
Sbjct: 1088 VGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYG 1147

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            L+ T PG  I+I+KNLR C DCHA+FK+ISK   ++I++RD NRFHHF  GTCSCGDYW
Sbjct: 1148 LVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 153/285 (53%), Gaps = 14/285 (4%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           +L  YAK G +  AR+ F+ +   DV+ W++MI  YAQ     +A  LF RM+   V PN
Sbjct: 673 LLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPN 732

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDA 162
           E +  +VL AC  +  L+ G+ IH++      IK+  +    VG ALI++Y+KC  ++ +
Sbjct: 733 EFSLSSVLQACANMPLLDLGKQIHNHA-----IKIGHESELFVGNALIDLYAKCSDMESS 787

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
             +F  + D + V WN++IVGY+  GFG+ AL +F EM    +  + +T+  +L ACA  
Sbjct: 788 LEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACAST 847

Query: 223 GLVNE-GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
             +N  G+      K  +  +  V +   +++  ++ G + +A ++   +K E D V W 
Sbjct: 848 ASINHVGQVHCLIEKSTFNSDTIVSN--SLIDSYAKCGCIRDAREIFETLK-ECDLVSWN 904

Query: 282 TLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIG 325
            ++    +HG  A+ +++ + +   ++ AN  T+V L ++  + G
Sbjct: 905 AIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTG 949



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 127/246 (51%), Gaps = 15/246 (6%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           + ++  Y+  G V+ AR +FD +  KD V W  M+  Y+++      L +F +M     +
Sbjct: 570 SALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSK 629

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            N     +VL A   + ++  G+ IH+    +        V  AL++MY+KCG+++DARL
Sbjct: 630 LNPFALTSVLRAAVCLSSVVLGKGIHACSVKTL-YDTERHVYGALLDMYAKCGNIEDARL 688

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            F+ V + DV++W+ MI  YA     + A +LF  M R  + P++ +   +L ACA+  L
Sbjct: 689 AFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPL 748

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYG------CMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           ++ G++  N     +AI  K+ H         +++L ++   +E + ++   ++ + + V
Sbjct: 749 LDLGKQIHN-----HAI--KIGHESELFVGNALIDLYAKCSDMESSLEIFSSLR-DVNEV 800

Query: 279 LWGTLL 284
            W T++
Sbjct: 801 SWNTII 806



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 136/268 (50%), Gaps = 10/268 (3%)

Query: 21  ARGGDVLSAEKLFAT-MPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
           ARGG  +    + +  + +  L     +L  Y K G   +A  +FD + E+++V +  ++
Sbjct: 444 ARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLV 503

Query: 80  DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
            G+A  G   EA  LF+R+  E  E N+     VL     +  L     +H+      + 
Sbjct: 504 QGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHD 563

Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
           + N  VG+ALI+ YS CG + DAR VFD +  KD V W +M+  Y+ +   ++ LQ+F++
Sbjct: 564 R-NAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSK 622

Query: 200 MCRI---RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
           M R+   +L P  +T +   + C  + ++ +G     ++K  Y  E  V  YG ++++ +
Sbjct: 623 M-RVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHAC-SVKTLYDTERHV--YGALLDMYA 678

Query: 257 RAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           + G +E+A +L  +M    D +LW  ++
Sbjct: 679 KCGNIEDA-RLAFEMVTNDDVILWSLMI 705


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/442 (42%), Positives = 277/442 (62%), Gaps = 4/442 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++  T ++ CY+  G V  AR +FD M  +D+V WN MI  ++Q GL  EAL  + +M +
Sbjct: 140 VIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRS 199

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E V+ +  T V ++S+C  +GAL  G  +H +   +  +  ++ VG ALI+MY+KCGSL 
Sbjct: 200 ENVDIDGFTLVGLISSCAHLGALNIGVQMHRFAREN-GLDQSLYVGNALIDMYAKCGSLD 258

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A L+FDR+  KD+  WNSMIVGY +HG G +A+  F +M   R++P+ +TF+GLL  C+
Sbjct: 259 QAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS 318

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GLV EG ++FN M  ++ ++P+V+HYGC+V+L  RAG++++A ++V +     DSVLW
Sbjct: 319 HQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSS-HNDSVLW 377

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLG+C++H N+ +GE     L      ++G  +LL+ IYA   +  GVAR+R ++K +
Sbjct: 378 RILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQ 437

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +  PG S IE+  +VH+F+  D  H  S E+Y  L E+       GYV    I   D+
Sbjct: 438 GKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDM 497

Query: 401 GEKQK--QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
               +  + S   HSEKLA+AFGL  T  GT I+IVKNLRVC DCH+  K +S    R+I
Sbjct: 498 LSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREI 557

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDR RFHHF  G CSC DYW
Sbjct: 558 IVRDRVRFHHFKGGECSCNDYW 579



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 123/238 (51%), Gaps = 4/238 (1%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAV 113
           G +A A++LF  ME      WN +I G+AQ     +A+V + +M+ +    P+  T   V
Sbjct: 52  GSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFV 111

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC +I A    + +H  +        +V V T L+  YS  GS+  AR VFD++  +D
Sbjct: 112 LKACERIKAERKCKEVHGSVIRC-GYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARD 170

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           +V WN+MI  ++  G  ++ALQ +N+M    +     T +GL+S+CAH G +N G +   
Sbjct: 171 LVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHR 230

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
             + E  ++  +     ++++ ++ G +++A  L+ D     D   W +++    +HG
Sbjct: 231 FAR-ENGLDQSLYVGNALIDMYAKCGSLDQAI-LIFDRMQRKDIFTWNSMIVGYGVHG 286



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           +SL     ++  YAK G +  A ++FD M+ KD+  WN MI GY  HG  +EA+  F++M
Sbjct: 239 QSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQM 298

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L  +++PN VT + +L  C   G ++ G    + + +   +K  V+    L+++Y + G 
Sbjct: 299 LEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGK 358

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMH---GFGKDALQLFNEM 200
           L  A  +    +  D V+W  ++    +H     G+ A+   +E+
Sbjct: 359 LDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSEL 403



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 113/281 (40%), Gaps = 53/281 (18%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM--YSKCGSLKDA 162
            NE   +A+L  C  +  L   R IH+++  S  +  +V +   L+N    S  GSL  A
Sbjct: 2   SNEKAILALLQGCNSLKRL---RKIHAHVIVS-GLHHHVPIANKLLNFCAISVSGSLAYA 57

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSAC-- 219
           +L+F ++       WNS+I G+A      DA+  +N+M C     P   TF  +L AC  
Sbjct: 58  QLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACER 117

Query: 220 ---------AHAGLVNEG------------------------RRFFNTMKDEYAIEPKVE 246
                     H  ++  G                        R+ F+ M     +     
Sbjct: 118 IKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVA---- 173

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG---ACRLHGNIALGEKIAEYL 303
            +  M++  S+ G  +EA +    M+ E   +   TL+G   +C   G + +G ++  + 
Sbjct: 174 -WNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRF- 231

Query: 304 ISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
             +N  +   YV   L ++YA  G+ D    +   M+ K +
Sbjct: 232 ARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDI 272


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/474 (39%), Positives = 289/474 (60%), Gaps = 3/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SL+D+Y + G    A  +F ++  ++ VS T+M++ YA+ G    A  LF    
Sbjct: 139 DEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGR 127
            +++  W  +I G  Q G    +  LF  M  E ++  + +   +V+  C  +  LE G+
Sbjct: 199 VRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGK 258

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            IH  +  +   +  + +  AL++MY+KC  +  A+ +F R+  KDV+ W S+IVG A H
Sbjct: 259 QIHGLV-IALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQH 317

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL L++EM   R+KP+++TF+GLL AC+HAGLV+ GR  F +M  +Y+I P ++H
Sbjct: 318 GKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQH 377

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+++LLSR+G ++EA  L+  +  +PD   W +LL AC  H N+ +G +IA+ ++   
Sbjct: 378 YTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLK 437

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD-LR 366
             +  TY+LLSN+YA    W  V++VR LM    V+KEPG SSI+       F AG+   
Sbjct: 438 PEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCD 497

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP   EI  +L++++  ++  GYVP T  VL+DI +++K+  L  HSE+LAVA+GL+   
Sbjct: 498 HPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAV 557

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PGT I+IVKNLR+C DCH V K IS    R+IM+RD  R+HHF  G CSC D+W
Sbjct: 558 PGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 35/237 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   DK   +S +L+D+Y + G +  A +LF  MP R  VS  ++LT + K        
Sbjct: 30  IKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL------ 83

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                +  + +   N M   +   GL                +P+      ++ AC  +G
Sbjct: 84  -----IPRRTLSMLNTM---FTHDGL----------------QPDHFVFACIVRACSSLG 119

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  G+ +H+    S      V V ++LI+MY+KCG   DAR VFD +  K+ V W SMI
Sbjct: 120 YLRLGKQVHARFMLSFFCDDEV-VKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMI 178

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
            GYA  G   +A+ LF +     L     ++  L+S    +G        FN M+ E
Sbjct: 179 SGYARSGRKCEAMDLFLQAPVRNL----FSWTALISGLIQSGHGIYSFSLFNEMRRE 231


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/458 (40%), Positives = 283/458 (61%), Gaps = 3/458 (0%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G  + A+ +  T     LV   +++  YAK G+   A ++F ++  +  V W  MI  Y 
Sbjct: 330 GRQIHAQTIVTTADSEILVG-NSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYV 388

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
           Q G   E L LF +M    V  ++ T  ++L A   I +L  G+ +HS+I  S     NV
Sbjct: 389 QKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS-GFMSNV 447

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
             G+AL+++Y+KCGS+KDA   F  + D+++V WN+MI  YA +G  +  L+ F EM   
Sbjct: 448 FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 507

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            L+P  ++F+G+LSAC+H+GLV EG   FN+M   Y ++P+ EHY  +V++L R+G+  E
Sbjct: 508 GLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNE 567

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYA 322
           A KL+ +M I+PD ++W ++L ACR+H N  L  + A+ L + + L ++  YV +SNIYA
Sbjct: 568 AEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYA 627

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
           A G W+ V++V   M+++GV+K P  S +E+ ++ H F A D  HP+ +EI   ++ +  
Sbjct: 628 AAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTK 687

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPD 442
            ++  GY P T   LH+  EK K  SL+ HSE+LA+AF LIST  G+ I ++KNLR C D
Sbjct: 688 TMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACID 747

Query: 443 CHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           CHA  K+ISK  GR+I +RD  RFHHF +G CSCGD+W
Sbjct: 748 CHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 42/327 (12%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----------------------- 38
           +K   D  L V  +LVD Y +   +  A +LF  MP+                       
Sbjct: 171 IKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQ 230

Query: 39  --RSLVSLTT----------MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86
              S V  T           +L  Y+K   V  AR LFD+M E+D V +NV+I GYA  G
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 290

Query: 87  LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
               A  LFR +     +  +     +LS        E GR IH+    +      + VG
Sbjct: 291 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVT-TADSEILVG 349

Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
            +L++MY+KCG  ++A ++F  +  +  V W +MI  Y   GF ++ LQLFN+M +  + 
Sbjct: 350 NSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI 409

Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
               TF  LL A A    ++ G++  ++   +      V     ++++ ++ G +++A +
Sbjct: 410 ADQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 468

Query: 267 LVMDMKIEPDS--VLWGTLLGACRLHG 291
              +M   PD   V W  ++ A   +G
Sbjct: 469 TFQEM---PDRNIVSWNAMISAYAQNG 492



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 98/223 (43%), Gaps = 38/223 (17%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D D   S   V  + + G++  A +LF  MP ++ VS   M++ Y K G +  AR
Sbjct: 39  VKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEAR 98

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LFD M E+  V W ++I GY+Q     EA  LF +M     EP+ VT V +LS C    
Sbjct: 99  KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC---N 155

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             E G  I              QV T +I    K G   D+RL          +V N+++
Sbjct: 156 GHEMGNQI-------------TQVQTQII----KLG--YDSRL----------IVGNTLV 186

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
             Y        A QLF EM  I       TF  +L  CA+ GL
Sbjct: 187 DSYCKSNRLDLACQLFKEMPEI----DSFTFAAVL--CANIGL 223



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 168/401 (41%), Gaps = 71/401 (17%)

Query: 12  VSTSL-VDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME-- 68
           VST++ +  Y + G++  A KLF  M +R+ V+ T ++  Y++  +   A  LF  M+  
Sbjct: 79  VSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRC 138

Query: 69  --EKDVVCWNVMIDGYAQHGLANE-------------------------------ALVLF 95
             E D V +  ++ G   H + N+                                L L 
Sbjct: 139 GTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLA 198

Query: 96  RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
            ++  E  E +  T  AVL A   +  +  G+ IHS++  + N   NV V  AL++ YSK
Sbjct: 199 CQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKT-NFVWNVFVSNALLDFYSK 257

Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
             S+ DAR +FD + ++D V +N +I GYA  G  K A  LF E+           F  +
Sbjct: 258 HDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATM 317

Query: 216 LSACAHAGLVNEGRRFF---------------NTMKDEYAIEPKVEH------------- 247
           LS  ++      GR+                 N++ D YA   K E              
Sbjct: 318 LSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSA 377

Query: 248 --YGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             +  M++   + G  EE  +L   M+   +  D   + +LL A     +++LG+++  +
Sbjct: 378 VPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSF 437

Query: 303 LI-SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           +I S  ++N  +   L ++YA  G+     +    M ++ +
Sbjct: 438 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNI 478



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 52/208 (25%)

Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIEN--SRNIKVNVQVGTALINM----YSKC 156
           ++P    A+  L++   + +L+S +   + + N  +R +K      T+  N     + K 
Sbjct: 1   MKPFRPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKN 60

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           G L  AR +F+++  K+ V  N MI GY                                
Sbjct: 61  GELSQARQLFEKMPHKNTVSTNMMISGYV------------------------------- 89

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---I 273
                +G + E R+ F+ M +  A+      +  ++   S+  Q +EA++L + M+    
Sbjct: 90  ----KSGNLGEARKLFDGMVERTAVT-----WTILIGGYSQLNQFKEAFELFVQMQRCGT 140

Query: 274 EPDSVLWGTLLGACRLHGNIALGEKIAE 301
           EPD V + TLL  C  H    +G +I +
Sbjct: 141 EPDYVTFVTLLSGCNGH---EMGNQITQ 165


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/474 (39%), Positives = 289/474 (60%), Gaps = 3/474 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SL+D+Y + G    A  +F ++  ++ VS T+M++ YA+ G    A  LF    
Sbjct: 139 DEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESGR 127
            +++  W  +I G  Q G    +  LF  M  E ++  + +   +V+  C  +  LE G+
Sbjct: 199 VRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGK 258

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            IH  +  +   +  + +  AL++MY+KC  +  A+ +F R+  KDV+ W S+IVG A H
Sbjct: 259 QIHGLV-IALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQH 317

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++AL L++EM   R+KP+++TF+GLL AC+HAGLV+ GR  F +M  +Y+I P ++H
Sbjct: 318 GKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQH 377

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C+++LLSR+G ++EA  L+  +  +PD   W +LL AC  H N+ +G +IA+ ++   
Sbjct: 378 YTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLK 437

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD-LR 366
             +  TY+LLSN+YA    W  V++VR LM    V+KEPG SSI+       F AG+   
Sbjct: 438 PEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCD 497

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
           HP   EI  +L++++  ++  GYVP T  VL+DI +++K+  L  HSE+LAVA+GL+   
Sbjct: 498 HPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAV 557

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PGT I+IVKNLR+C DCH V K IS    R+IM+RD  R+HHF  G CSC D+W
Sbjct: 558 PGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 35/237 (14%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           +K   DK   +S +L+D+Y + G +  A +LF  MP R  VS  ++LT + K        
Sbjct: 30  IKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL------ 83

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
                +  + +   N M   +   GL                +P+      ++ AC  +G
Sbjct: 84  -----IPRRTLSMLNTM---FTHDGL----------------QPDHFVFACIVRACSSLG 119

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L  G+ +H+    S      V V ++LI+MY+KCG   +AR VFD +  K+ V W SMI
Sbjct: 120 YLRLGKQVHARFMLSXFCDDEV-VKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMI 178

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
            GYA  G   +A+ LF +     L     ++  L+S    +G        FN M+ E
Sbjct: 179 SGYARSGRKCEAMDLFLQAPVRNL----FSWTALISGLIQSGHGIYSFSLFNEMRRE 231


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/458 (40%), Positives = 283/458 (61%), Gaps = 3/458 (0%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           G  + A+ +  T     LV   +++  YAK G+   A ++F ++  +  V W  MI  Y 
Sbjct: 370 GRQIHAQTIVTTADSEILVG-NSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYV 428

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
           Q G   E L LF +M    V  ++ T  ++L A   I +L  G+ +HS+I  S     NV
Sbjct: 429 QKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS-GFMSNV 487

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
             G+AL+++Y+KCGS+KDA   F  + D+++V WN+MI  YA +G  +  L+ F EM   
Sbjct: 488 FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 547

Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
            L+P  ++F+G+LSAC+H+GLV EG   FN+M   Y ++P+ EHY  +V++L R+G+  E
Sbjct: 548 GLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNE 607

Query: 264 AYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS-QNLANSGTYVLLSNIYA 322
           A KL+ +M I+PD ++W ++L ACR+H N  L  + A+ L + + L ++  YV +SNIYA
Sbjct: 608 AEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYA 667

Query: 323 AIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEING 382
           A G W+ V++V   M+++GV+K P  S +E+ ++ H F A D  HP+ +EI   ++ +  
Sbjct: 668 AAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTK 727

Query: 383 WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPD 442
            ++  GY P T   LH+  EK K  SL+ HSE+LA+AF LIST  G+ I ++KNLR C D
Sbjct: 728 TMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACID 787

Query: 443 CHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           CHA  K+ISK  GR+I +RD  RFHHF +G CSCGD+W
Sbjct: 788 CHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 15/229 (6%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           VK   D D   S   V  + + G++  A +LF  MP ++ VS   M++ Y K G +  AR
Sbjct: 44  VKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEAR 103

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC---- 117
            LFD M E+  V W ++I GY+Q     EA  LF +M     EP+ VT V +LS C    
Sbjct: 104 KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHE 163

Query: 118 --GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
              QI  +++      Y  +SR I     VG  L++ Y K   L  A  +F  + + D V
Sbjct: 164 MGNQITQVQTQIIKLGY--DSRLI-----VGNTLVDSYCKSNRLDLACQLFKEMPEIDSV 216

Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
            +N+MI GY+  G  + A+ LF EM    LKP++ TF  +L  CA+ GL
Sbjct: 217 SYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 153/336 (45%), Gaps = 35/336 (10%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           L+   T++  Y K   +  A  LF +M E D V +N MI GY++ GL  +A+ LF  M  
Sbjct: 184 LIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN 243

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
             ++P E T  AVL A   +  +  G+ IHS++  + N   NV V  AL++ YSK  S+ 
Sbjct: 244 SGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKT-NFVWNVFVSNALLDFYSKHDSVI 302

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
           DAR +FD + ++D V +N +I GYA  G  K A  LF E+           F  +LS  +
Sbjct: 303 DARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIAS 362

Query: 221 HAGLVNEGRRFF---------------NTMKDEYAIEPKVEH---------------YGC 250
           +      GR+                 N++ D YA   K E                +  
Sbjct: 363 NTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTA 422

Query: 251 MVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLI-SQ 306
           M++   + G  EE  +L   M+   +  D   + +LL A     +++LG+++  ++I S 
Sbjct: 423 MISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG 482

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            ++N  +   L ++YA  G+     +    M ++ +
Sbjct: 483 FMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNI 518



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 26/166 (15%)

Query: 150 INMYSKCGSLKDARLVFDRVN-----------DKDVVVWNSMIVGYAMHGFGKDALQLFN 198
           ++ + K  SL+  +L  + VN           D D    N  +  +  +G    A QLF 
Sbjct: 17  VSTFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFE 76

Query: 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258
           +M       +++    ++S    +G + E R+ F+ M +  A+      +  ++   S+ 
Sbjct: 77  KMPHKNTVSTNM----MISGYVKSGNLGEARKLFDGMVERTAVT-----WTILIGGYSQL 127

Query: 259 GQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAE 301
            Q +EA++L + M+    EPD V + TLL  C  H    +G +I +
Sbjct: 128 NQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH---EMGNQITQ 170


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/443 (41%), Positives = 284/443 (64%), Gaps = 2/443 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R       +++ Y + G + +AR  F  +E+K++  WN M+  YAQ     +AL L++ M
Sbjct: 212 RDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNM 271

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L E   P+  T  +V+ +C  +GAL  G++IH     S   + +V +GTAL+NMY+KCGS
Sbjct: 272 LLEGFTPDRFTFSSVVDSCASLGALREGKFIHE-CSTSCGFEKDVILGTALVNMYAKCGS 330

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L DA+  FD +++KDVV W++MI   A HG  ++AL+L + M    +  +++T   +L A
Sbjct: 331 LADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHA 390

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H G + EG  +F  +  ++ IE   E+    ++LL RAG ++EA  ++  M  +   V
Sbjct: 391 CSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFV 450

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
              TLLG C++HG++  G+   + +++    N G+YVLL+N+YAA G WD VA++R  M+
Sbjct: 451 ALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMR 510

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVL 397
           +KGV+++ GCSSIE  +K++EF  GD  +P++ EI   LE +   +K  EGYVP T+ V 
Sbjct: 511 KKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVF 570

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ + +K+  L+ HSEK+A+ FGLI++ PG++++I+KNLRVC DCH V KL SK TGR+
Sbjct: 571 HDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRR 630

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD  RFHHF  G CSCGDYW
Sbjct: 631 IIVRDGTRFHHFEGGICSCGDYW 653



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 174/348 (50%), Gaps = 12/348 (3%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATM-PQRSLVSLTTMLTCYAKQGEVAAAR 61
           +   +KD+ V+TSL+ L+A+ G +  AE +F +M   R ++S+T M+  Y   G +  ++
Sbjct: 76  ELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYC--GSLKDSK 133

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            LF  M+ KDVV WN MI  Y  +G   +A  LF RM      P+  T  ++L AC    
Sbjct: 134 SLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPK 193

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            LE GR +H  I  +R    +  +   LI+MY++CGSL+ AR  F  +  K++  WN+M+
Sbjct: 194 RLEDGRMLHVRI-TARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTML 252

Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
             YA    GKDAL L+  M      P   TF  ++ +CA  G + EG +F +        
Sbjct: 253 AAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-KFIHECSTSCGF 311

Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
           E  V     +VN+ ++ G + +A K   D     D V W  ++ A   HG+     +++ 
Sbjct: 312 EKDVILGTALVNMYAKCGSLADAKK-SFDGISNKDVVSWSAMIAASAQHGHAEEALELSH 370

Query: 302 YLISQNLANSGTYVLLSNIYAAIGN----WDGVARVRTLMKEKGVQKE 345
            +  Q +A +   V  S++  A  +    ++G+     L ++ G++++
Sbjct: 371 LMNLQGIAQN--EVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERD 416



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 128/257 (49%), Gaps = 33/257 (12%)

Query: 60  ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
           AR +FD +++++   W+++++ Y Q+ +  EAL +++ M+ E++  +  T  +VL+AC +
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG---------------------- 157
           +  +E GR +    E     + +V V T+LI++++KCG                      
Sbjct: 61  LLDVEEGRMVQRKAEE-LGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 119

Query: 158 --------SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
                   SLKD++ +F  ++ KDVV WN+MI  Y ++G  KDA  LF+ MC +   P  
Sbjct: 120 AMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDI 179

Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
            TF  +L ACA    + +G R  +        +        ++++ +R G +E A +   
Sbjct: 180 YTFSSILGACASPKRLEDG-RMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFY 238

Query: 270 DMKIEPDSVLWGTLLGA 286
            ++ + +   W T+L A
Sbjct: 239 SIE-KKELGAWNTMLAA 254



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           ++ ++  T ++  YAK G +A A+  FD +  KDVV W+ MI   AQHG A EAL L   
Sbjct: 312 EKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHL 371

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  + +  NEVTA +VL AC   G L  G      +     I+ + +     I++  + G
Sbjct: 372 MNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAG 431

Query: 158 SLKDARLVFDRVNDK-DVVVWNSMIVGYAMHG 188
            LK+A  V   +  K   V   +++ G  +HG
Sbjct: 432 WLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 463


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/477 (40%), Positives = 285/477 (59%), Gaps = 8/477 (1%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRS-----LVSLTTMLTCYAKQGEVAAARVL 63
           D++  TS +D +A G + L   K       R+     L     ++  Y K G +  AR +
Sbjct: 185 DVFAITSALDAFA-GNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFI 243

Query: 64  FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
           FD + +KD + WN +I GY++  LANEA  LF  ML + + PN VT   +L A   + +L
Sbjct: 244 FDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSL 302

Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
           E GR +H+Y      ++ N  V  AL++MY KCG+L  AR +FD + +K+++ W  MI G
Sbjct: 303 ERGREMHAYAVRRGYLEDNF-VANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAG 361

Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243
           Y MHG G+DA+ LF +M    ++P   +F  +L AC+H+GL +EG RFFN M++E+ IEP
Sbjct: 362 YGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEP 421

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
           K++HY CMV+LL   G ++EAY+ +  M IEPDS +W +LL  CR+H N+ L EK+AE +
Sbjct: 422 KLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMV 481

Query: 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAG 363
                 N+G YVLL+NIYA    W+ V +++  +  +G+++  GCS IE+  K H F A 
Sbjct: 482 FELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAE 541

Query: 364 DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
           +  HP+   I   L+++   ++ EG+ P+ +  L    +     +L  HS KLAVAFG++
Sbjct: 542 NRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVL 601

Query: 424 STQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           +   G  I++ KN RVC  CH   K ISK  GR+I++RD NRFHHF  G CSC  YW
Sbjct: 602 NLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 139/311 (44%), Gaps = 55/311 (17%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
           +V+  L  +  +  +L+D+Y+   D  S  K+F  M Q+++VS T M+T Y + G     
Sbjct: 111 SVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGH---- 166

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
              FD +                          LF+ M  E + P+     + L A    
Sbjct: 167 ---FDKVAG------------------------LFQEMGLEGIRPDVFAITSALDAFAGN 199

Query: 121 GALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS 179
            +L+ G+ +H Y I N   I+  + V  AL+ MY KCG +++AR +FD V  KD + WN+
Sbjct: 200 ESLKHGKSVHGYAIRNG--IEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNT 257

Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------N 233
           +I GY+      +A  LFNEM  ++L+P+ +T   +L A A    +  GR          
Sbjct: 258 LIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRG 316

Query: 234 TMKDEYAIEPKVEHY-GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
            ++D +     V+ Y  C   LL+R          + DM    + + W  ++    +HG 
Sbjct: 317 YLEDNFVANALVDMYVKCGALLLARR---------LFDMLTNKNLISWTIMIAGYGMHGR 367

Query: 293 ----IALGEKI 299
               IAL E++
Sbjct: 368 GRDAIALFEQM 378



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 11/246 (4%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
             +++ YAK   +  A ++FD+M ++D++ WN +I G A +GL ++A+ LF RM  E  E
Sbjct: 23  NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
            +  T ++V+ AC Q      G  +H Y   +  I     +G AL++MYS C   +    
Sbjct: 83  LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLIS-ETSLGNALLDMYSNCSDWRSTNK 141

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           +F  +  K+VV W +MI  Y   G       LF EM    ++P        L A A    
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNES 201

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDMKIEPDSVLW 280
           +  G+         YAI   +E    + N L     + G +EEA + + D   + D++ W
Sbjct: 202 LKHGKSVHG-----YAIRNGIEEVLPVANALMEMYVKCGYMEEA-RFIFDHVTKKDTISW 255

Query: 281 GTLLGA 286
            TL+G 
Sbjct: 256 NTLIGG 261



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 32/181 (17%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D +V+ +LVD+Y + G +L A +LF  +  ++L+S T M+                   
Sbjct: 319 EDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIA------------------ 360

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
                        GY  HG   +A+ LF +M    ++P+  +  A+L AC   G  + G 
Sbjct: 361 -------------GYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGW 407

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAM 186
              + + N   I+  ++    ++++    G+LK+A    + +  + D  +W S++ G  +
Sbjct: 408 RFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRI 467

Query: 187 H 187
           H
Sbjct: 468 H 468



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 35/198 (17%)

Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
           V  ALI+ Y+K   ++DA +VFD +  +D++ WNS+I G A +G    A++LF  M    
Sbjct: 21  VCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEG 80

Query: 205 LKPSDITFIGLLSACAHA----------------GLVNEGRRFFNTMKDEYA-------- 240
            +    T + ++ AC  +                GL++E     N + D Y+        
Sbjct: 81  QELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISE-TSLGNALLDMYSNCSDWRST 139

Query: 241 ------IEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLH 290
                 +E K V  +  M+   +RAG  ++   L  +M +E   PD     + L A   +
Sbjct: 140 NKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGN 199

Query: 291 GNIALGEKIAEYLISQNL 308
            ++  G+ +  Y I   +
Sbjct: 200 ESLKHGKSVHGYAIRNGI 217


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/447 (42%), Positives = 287/447 (64%), Gaps = 5/447 (1%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           Q +LV  ++++  Y K  +V  AR++FD M  ++VV W  MI GYAQ+G   EAL +FR 
Sbjct: 139 QGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFRE 198

Query: 98  MLAEKVE-PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
             +  +E PN     +V++AC  +G L SG+  H  +      ++N  V +AL++MY+KC
Sbjct: 199 FSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRG-GYELNDVVASALVDMYAKC 257

Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
           GS   +  VF R+ +  V+ + SMIVG A +G GK +L LF EM   ++ P+D+TF+G+L
Sbjct: 258 GSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGIL 317

Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
            AC+H+GLV+EG R  N+M +++ + P V HY C+V++LSR G+++EAYKL   +++ P+
Sbjct: 318 HACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPN 377

Query: 277 --SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
             ++LWGTLL + RLHG + +  + +++LI  N   +G YV LSN Y   G W+    +R
Sbjct: 378 EGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLR 437

Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV-PQT 393
           T M+  GV KEPGCS IE+ + ++ F AGDL   +  E+  +L E+   +   G V   T
Sbjct: 438 TEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGCVGGST 497

Query: 394 QIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKF 453
            +V  D+ ++ K+  + +HSE+LA+AFGLIS   G +I+++KNLR+C DCH  FKLISK 
Sbjct: 498 GLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLRICSDCHEAFKLISKI 557

Query: 454 TGRKIMMRDRNRFHHFVNGTCSCGDYW 480
             R  ++RD NRFHHF +G+C+C D+W
Sbjct: 558 VERDFVVRDVNRFHHFKDGSCTCKDFW 584



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 109/189 (57%), Gaps = 2/189 (1%)

Query: 42  VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
           ++   +L  Y +   +  A  LFD+M E +VV W  ++ GY   G    AL L+ +M   
Sbjct: 42  ITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMSES 101

Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
           +V PN  T   V+++C  +  L++G+ +H++++    ++ N+ V ++L++MY KC  +  
Sbjct: 102 EVSPNGFTLATVINSCSILADLKTGKMVHAHVQ-ILGLQGNLVVCSSLVDMYGKCNDVDG 160

Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACA 220
           AR+VFD ++ ++VV W +MI GYA +G G +AL++F E     + +P+      +++ACA
Sbjct: 161 ARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINACA 220

Query: 221 HAGLVNEGR 229
             G +  G+
Sbjct: 221 SLGRLVSGK 229



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 34/180 (18%)

Query: 12  VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
           V+++LVD+YA+ G  L +EK+F  +   S++  T+M+                       
Sbjct: 246 VASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIV---------------------- 283

Query: 72  VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
                    G A++GL   +L LF  M   KV PN+VT V +L AC   G ++ G  + +
Sbjct: 284 ---------GAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLN 334

Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD--RVN-DKDVVVWNSMIVGYAMHG 188
            +     +  +V+  T +++M S+ G L +A  +    RVN ++  ++W +++    +HG
Sbjct: 335 SMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHG 394


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/474 (39%), Positives = 291/474 (61%), Gaps = 2/474 (0%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           +D  V +SLVD+YA+         +F ++ + S +S T M++ YA+ G    A  LF + 
Sbjct: 144 EDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRES 203

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAVLSACGQIGALESG 126
             K++  W  +I G  Q G AN+AL LF  M  E V   + +   +V+ AC      E G
Sbjct: 204 PFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELG 263

Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
           + +H  +  +   +  + +  AL++MY+KC  +  A+ +F  +  KDVV W S+IVG A 
Sbjct: 264 KQVHCVV-ITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQ 322

Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
           HG  ++AL L+++M    +KP+++TF+GL+ AC+H GLV++GR  F +M +++ I P ++
Sbjct: 323 HGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQ 382

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
           HY C+++L SR+G ++EA  L+  M ++PD   W  LL AC+ HGN  +  +IA++L+  
Sbjct: 383 HYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDL 442

Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
              +  +Y+LLSNIYA  G W+ V+ VR LM  K V+K PG S ++L  +   F AG+  
Sbjct: 443 KPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEAS 502

Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
            P   EI  ++ +++  ++  GYVP T  VL D+ +++K+  L  HSE+LA+A+GL+   
Sbjct: 503 QPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAV 562

Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           PGT+I+IVKNLRVC DCH V KLIS  T R+I +RD  R+HHF +G CSC D+W
Sbjct: 563 PGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
           T++  Y K G +  A  LFD + ++D V W  ++       L ++A  +   +L E ++P
Sbjct: 48  TLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQP 107

Query: 106 NEVTAVAVLSACGQIGA--LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +     +++ AC  +G+  ++ G+ +H+    S   + +V V ++L++MY+K       R
Sbjct: 108 DHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDV-VKSSLVDMYAKFELPDYGR 166

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VFD + +   + W +MI GYA  G   +AL+LF E     L      +  L+S    +G
Sbjct: 167 AVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNL----YAWTALISGLVQSG 222

Query: 224 LVNEGRRFFNTMKDE 238
             N+    F  M+ E
Sbjct: 223 NANDALYLFVEMRRE 237



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           LI+ Y KCG LKDA  +FD +  +D V W +++    +      A  +   +    L+P 
Sbjct: 49  LIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPD 108

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE--EAYK 266
              F  L+ ACA+ G V+   +    +   + + P  E      +L+    + E  +  +
Sbjct: 109 HFVFSSLIKACANLGSVHV--KLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGR 166

Query: 267 LVMDMKIEPDSVLWGTLLG 285
            V D   E  S+ W  ++ 
Sbjct: 167 AVFDSIFELSSISWTAMIS 185


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/436 (43%), Positives = 281/436 (64%), Gaps = 4/436 (0%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEP 105
           +++ Y K G +  A V+F+ M+EK V  W+ +I  +A   + +E L+L   M  E +   
Sbjct: 172 LISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRA 231

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARL 164
            E   V+ LSAC  +G+   GR IH  +   RNI ++NV V T+LI+MY KCGSL+    
Sbjct: 232 EESILVSALSACTHLGSPNLGRCIHGIL--LRNISELNVVVKTSLIDMYVKCGSLEKGLC 289

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  +  K+   +  MI G A+HG G++A+++F++M    L P D+ ++G+LSAC+HAGL
Sbjct: 290 VFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGL 349

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
           VNEG + FN M+ E+ I+P ++HYGCMV+L+ RAG ++EAY L+  M I+P+ V+W +LL
Sbjct: 350 VNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLL 409

Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
            AC++H N+ +GE  AE +   N  N G Y++L+N+YA    W  VAR+RT M EK + +
Sbjct: 410 SACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQ 469

Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
            PG S +E +  V++F++ D   P  + IY M++++   LK EGY P    VL D+ E +
Sbjct: 470 TPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDE 529

Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
           K+  L+ HS+KLA+AF LI T  G+ I+I +NLR+C DCH   K IS    R+I +RDRN
Sbjct: 530 KRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRN 589

Query: 465 RFHHFVNGTCSCGDYW 480
           RFHHF +GTCSC DYW
Sbjct: 590 RFHHFKDGTCSCKDYW 605



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 35/279 (12%)

Query: 52  AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV 111
           ++ G +  A  +F  +EE     +N MI G        EAL+L+  ML   +EP+  T  
Sbjct: 76  SRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYP 135

Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
            VL AC  + AL+ G  IH+++  +  ++V+V V   LI+MY KCG+++ A +VF+++++
Sbjct: 136 FVLKACSLLVALKEGVQIHAHVFKA-GLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDE 194

Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAGLVNEGRR 230
           K V  W+S+I  +A      + L L  +M    R +  +   +  LSAC H G  N GR 
Sbjct: 195 KSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRC 254

Query: 231 FF---------------NTMKDEYAIEPKVEH---------------YGCMVNLLSRAGQ 260
                             ++ D Y     +E                Y  M+  L+  G+
Sbjct: 255 IHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGR 314

Query: 261 VEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALG 296
             EA ++  DM  E   PD V++  +L AC   G +  G
Sbjct: 315 GREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEG 353



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 32  LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
           L   + + ++V  T+++  Y K G +     +F +M  K+   + VMI G A HG   EA
Sbjct: 259 LLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREA 318

Query: 92  LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
           + +F  ML E + P++V  V VLSAC   G +  G    + ++    IK  +Q    +++
Sbjct: 319 VRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVD 378

Query: 152 MYSKCGSLKDARLVFDRVNDKDV----VVWNSMIVGYAMH 187
           +  + G LK+A   +D +    +    VVW S++    +H
Sbjct: 379 LMGRAGMLKEA---YDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/473 (39%), Positives = 287/473 (60%), Gaps = 2/473 (0%)

Query: 9   DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
           D  V +SL+D+Y + G    A K+F ++  ++ V  T +++ YA  G    A  LF  M 
Sbjct: 137 DNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMP 196

Query: 69  EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVA-VLSACGQIGALESGR 127
              +  W  +I G+ + G    A+ LF  M  + +  ++   +A V+     + AL  GR
Sbjct: 197 AHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGR 256

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            +H ++     +   + VG AL++MYSKC  +  AR VF+ +  +DV+ W +++VG A H
Sbjct: 257 QLHGFVMRLGFLSSMI-VGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQH 315

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
           G  ++   L+N M    +KP+++TF+GL+ AC+HAGLV +GR+ F++MK EY ++P V+H
Sbjct: 316 GRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQH 375

Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
           Y C ++LLSR+G + EA KL+  M  EPD   WG LL AC+ H +  +  ++A+ L+   
Sbjct: 376 YTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELR 435

Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
             +  TY+LLSN+YA    WD VA+VR +M E  ++K PG S +E   +   F AG++  
Sbjct: 436 PKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPL 495

Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQP 427
              +EI   LEE+   ++  GYVP T  V+HD+ E +K+  L VHSE+LAVAFG++ + P
Sbjct: 496 DVGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPP 555

Query: 428 GTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
           G+ I++VKNLRVC DCH V K IS    RKI++RD +RFHHF +G CSC ++W
Sbjct: 556 GSVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 6/193 (3%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP 105
           +++ YA+   +  AR  FDD   +D+  ++ ++   +        L L RRML++  + P
Sbjct: 42  LVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRP 101

Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
           +     ++ SA G++ +L  GR +H++   S     NV V ++LI+MY KCG  +DAR V
Sbjct: 102 DHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNV-VKSSLIDMYCKCGVPQDARKV 160

Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
           FD +  K+ VVW ++I GYA +G   +AL LF  M    L     T+  L+S    AG  
Sbjct: 161 FDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL----FTWTALISGFVKAGNY 216

Query: 226 NEGRRFFNTMKDE 238
                 F  M+ +
Sbjct: 217 TGAMGLFVEMRRD 229


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/479 (39%), Positives = 289/479 (60%), Gaps = 16/479 (3%)

Query: 6    LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
             D D+YV TSL+D+Y +   + SA+ +F  M  R++ +  ++++ Y+ +G    A  L +
Sbjct: 942  FDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 1001

Query: 66   DMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
             ME++    D+V WN MI GYA  G A +A +           PN  +   +L AC  + 
Sbjct: 1002 QMEKEGIKPDLVTWNGMISGYAMWGCARKAFM-----------PNSASITCLLRACASLS 1050

Query: 122  ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
             L+ G+ IH     +  I+ +V V TALI+MYSK  SLK+A  VF R+ +K +  WN MI
Sbjct: 1051 LLQKGKEIHCLSIRNGFIE-DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 1109

Query: 182  VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
            +G+A+ G GK+A+ +FNEM ++ + P  ITF  LLSAC ++GL+ EG ++F++M  +Y I
Sbjct: 1110 MGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRI 1169

Query: 242  EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
             P++EHY CMV+LL RAG ++EA+ L+  M ++PD+ +WG LLG+CR+H N+   E  A+
Sbjct: 1170 VPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAK 1229

Query: 302  YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
             L      NS  Y+L+ N+Y+    W+ +  +R LM   GV+     S I+++ +VH F 
Sbjct: 1230 NLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFS 1289

Query: 362  AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
            + +  HP + +IY  L ++   +K  GYVP    V  ++ E +KQ  L  H+EKLA+ +G
Sbjct: 1290 SDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYG 1349

Query: 422  LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            LI  + G  I+++KN R+C DCH+  K IS    R++ +RD  RFHHF  G CSC D+W
Sbjct: 1350 LIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 143/303 (47%), Gaps = 8/303 (2%)

Query: 46   TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
             ++  Y +   +  A  +F +M   + + WN  I    Q     + + LFR+M    ++ 
Sbjct: 714  ALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKA 773

Query: 106  NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
               T V VL ACG++GAL + + IH Y+     +  +V +   LI+MYSK G L+ AR V
Sbjct: 774  ETATIVRVLQACGKMGALNAAKQIHGYVFRF-GLDSDVSLCNPLISMYSKNGKLELARRV 832

Query: 166  FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
            FD + +++   WNSMI  YA  GF  DA  LF E+    +KP  +T+  LLS     G  
Sbjct: 833  FDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK 892

Query: 226  NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV---EEAYKLVMDMKIEPDSVLWGT 282
             E       M+ E   +P       ++  +S  G +   +E +  V+    + D  +  +
Sbjct: 893  EEVLNILQRMQGE-GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTS 951

Query: 283  LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
            L+     + ++   + + + + ++N+    + V   + Y+  G ++   R+   M+++G+
Sbjct: 952  LIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLV---SGYSFKGMFEDALRLLNQMEKEGI 1008

Query: 343  QKE 345
            + +
Sbjct: 1009 KPD 1011



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 121/286 (42%), Gaps = 47/286 (16%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY-AQHGLANEALVLFRRMLAEKVE 104
            +++ Y   G+  +A ++F     ++ + WN  ++ + +  G  +  L +F+ +  + V 
Sbjct: 612 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 671

Query: 105 -PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
             +EV +VA L  C ++  +  G  IH  +   R   ++V +  AL+N Y +C  L+ A 
Sbjct: 672 FDSEVYSVA-LKTCTRVMDIWLGMEIHGCLIK-RGFDLDVYLRCALMNFYGRCWGLEKAN 729

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
            VF  + + + ++WN  I+        +  ++LF +M    LK    T + +L AC   G
Sbjct: 730 QVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMG 789

Query: 224 LVNE-----------------------------------GRRFFNTMKDEYAIEPKVEHY 248
            +N                                     RR F++M++          +
Sbjct: 790 ALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENR-----NTSSW 844

Query: 249 GCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHG 291
             M++  +  G + +A+ L  +++   ++PD V W  LL    LHG
Sbjct: 845 NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHG 890


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/442 (42%), Positives = 277/442 (62%), Gaps = 4/442 (0%)

Query: 41  LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
           ++  T ++ CY+  G V  AR +FD M  +D+V WN MI  ++Q GL  EAL  + +M +
Sbjct: 140 VIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRS 199

Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
           E V+ +  T V ++S+C  +GAL  G  +H +   +  +  ++ VG ALI+MY+KCGSL 
Sbjct: 200 ENVDVDGFTLVGLISSCAHLGALNIGVQMHRFAREN-GLDQSLYVGNALIDMYAKCGSLD 258

Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
            A L+FDR+  KD+  WNSMIVGY +HG G +A+  F +M   R++P+ +TF+GLL  C+
Sbjct: 259 QAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCS 318

Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
           H GLV EG ++FN M  ++ ++P+V+HYGC+V+L  RAG++++A ++V +     DSVLW
Sbjct: 319 HQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSNSS-HNDSVLW 377

Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
             LLG+C++H N+ +GE     L      ++G  +LL+ IYA   +  GVAR+R ++K +
Sbjct: 378 RILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGEKDKAGVARMRKMIKSQ 437

Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
           G +  PG S IE+  +VH+F+  D  H  S E+Y  L E+       GYV    I   D+
Sbjct: 438 GKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQASFFGYVGDESISSLDM 497

Query: 401 GEKQK--QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
               +  + S   HSEKLA+AFGL  T  GT I+IVKNLRVC DCH+  K +S    R+I
Sbjct: 498 LSTMETLKTSCTYHSEKLAIAFGLARTADGTQIRIVKNLRVCRDCHSFIKAVSVAFNREI 557

Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
           ++RDR RFHHF  G CSC DYW
Sbjct: 558 IVRDRVRFHHFKGGECSCNDYW 579



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 122/238 (51%), Gaps = 4/238 (1%)

Query: 55  GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE-PNEVTAVAV 113
           G +A A++LF  ME      WN +I G+AQ     +A+V + +M+ +    P+  T   V
Sbjct: 52  GSLAYAQLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFV 111

Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD 173
           L AC +I A    + +H  +        +V V T L+  YS  G +  AR VFD++  +D
Sbjct: 112 LKACERIKAERKCKEVHGSVIRC-GYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARD 170

Query: 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233
           +V WN+MI  ++  G  ++ALQ +N+M    +     T +GL+S+CAH G +N G +  +
Sbjct: 171 LVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQ-MH 229

Query: 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
               E  ++  +     ++++ ++ G +++A  L+ D     D   W +++    +HG
Sbjct: 230 RFARENGLDQSLYVGNALIDMYAKCGSLDQAI-LIFDRMQRKDIFTWNSMIVGYGVHG 286



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           +SL     ++  YAK G +  A ++FD M+ KD+  WN MI GY  HG  +EA+  F++M
Sbjct: 239 QSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQM 298

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L  +++PN VT + +L  C   G ++ G    + + +   +K  V+    L+++Y + G 
Sbjct: 299 LEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGK 358

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMH---GFGKDALQLFNEM 200
           L  A  +    +  D V+W  ++    +H     G+ A+   +E+
Sbjct: 359 LDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSEL 403



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 53/281 (18%)

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM--YSKCGSLKDA 162
            NE   +A+L  C  +  L   R IH+++  S  +  +V +   L+N    S  GSL  A
Sbjct: 2   SNEKAILALLQGCNSLKRL---RKIHAHVIVS-GLHHHVPIANKLLNFCAISVSGSLAYA 57

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSAC-- 219
           +L+F ++       WNS+I G+A      DA+  +N+M C     P   TF  +L AC  
Sbjct: 58  QLLFHQMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACER 117

Query: 220 ---------------------------------AHAGLVNEGRRFFNTMKDEYAIEPKVE 246
                                            +  GLV   R+ F+ M     +     
Sbjct: 118 IKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVA---- 173

Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG---ACRLHGNIALGEKIAEYL 303
            +  M++  S+ G  +EA +    M+ E   V   TL+G   +C   G + +G ++  + 
Sbjct: 174 -WNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRF- 231

Query: 304 ISQNLANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEKGV 342
             +N  +   YV   L ++YA  G+ D    +   M+ K +
Sbjct: 232 ARENGLDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDI 272


>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
 gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
          Length = 401

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/400 (45%), Positives = 259/400 (64%), Gaps = 2/400 (0%)

Query: 82  YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
           +A++GL +EA+ LF +ML   ++P+ V  V +L A   + +L  G+ IH ++   +   V
Sbjct: 3   FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK-FPV 61

Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201
              V ++L++MYS CGS+  A  VFD    KDVV+W +MI    MHG GK A+ +F  M 
Sbjct: 62  EGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRML 121

Query: 202 RIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261
              + P  ++F+ LL AC+H+ LV+EG+ + + M  +Y ++P  EHY C+V+LL R+GQ 
Sbjct: 122 ETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQT 181

Query: 262 EEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321
           EEAYK +  M +EP SV+W  LLGACR+H N  L     + L+     N G YVL+SN++
Sbjct: 182 EEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVF 241

Query: 322 AAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEIN 381
           A +G W+ V  +RT M E+G++K+P CS IE+ N VH F A D  H  S+ I++ L EI 
Sbjct: 242 AEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEIT 301

Query: 382 GWLKAEG-YVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVC 440
             L+ EG YV  T  VLHD+ E++K + L  HSE+LA++FGLIST  GT ++I KNLRVC
Sbjct: 302 EKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVC 361

Query: 441 PDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            DCH   KL+SK   R+I++RD NRFHHF  GTCSCGD+W
Sbjct: 362 GDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 401



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 44  LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
           +++++  Y+  G +  A  +FD+ + KDVV W  MI+    HG   +A+ +F+RML   V
Sbjct: 66  VSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGV 125

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
            P+ V+ +A+L AC     ++ G++    + +   ++   +    ++++  + G  ++A 
Sbjct: 126 SPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAY 185

Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMH 187
           + +     +   VVW +++    +H
Sbjct: 186 KFIKSMPLEPKSVVWCALLGACRIH 210


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/443 (41%), Positives = 285/443 (64%), Gaps = 2/443 (0%)

Query: 39  RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
           R       +++ + + G + +AR  F  +E+K++  WN M+  YAQ     +AL L++ M
Sbjct: 304 RDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNM 363

Query: 99  LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
           L E   P+  T  +V+ +C  +GAL  G++IH     S   + +V +GTAL+NMY+KCGS
Sbjct: 364 LLEGFTPDRFTFSSVVDSCASLGALREGKFIHE-CSTSCGFEKDVILGTALVNMYAKCGS 422

Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
           L DA+  FD +++KDVV W++MI   A HG  ++AL+L + M    +  +++T   +L A
Sbjct: 423 LADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHA 482

Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
           C+H G + EG  +F  +  ++ IE   E+    ++LL RAG ++EA  ++  M  +   V
Sbjct: 483 CSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFV 542

Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
              TLLG C++HG++  G+ + + +++    N G+YVLL+N+YAA G WD VA++R  M+
Sbjct: 543 ALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMR 602

Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLK-AEGYVPQTQIVL 397
           +KGV+++ GCSSIE  +K++EF  GD  +P++ EI   LE +   +K  EGYVP T+ V 
Sbjct: 603 KKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVF 662

Query: 398 HDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRK 457
           HD+ + +K+  L+ HSEK+A+ FGLI++ PG++++I+KNLRVC DCH V KL SK TGR+
Sbjct: 663 HDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRR 722

Query: 458 IMMRDRNRFHHFVNGTCSCGDYW 480
           I++RD  RFHHF  G CSCGDYW
Sbjct: 723 IIVRDGTRFHHFEGGICSCGDYW 745



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 139/284 (48%), Gaps = 33/284 (11%)

Query: 3   KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
           +   +KD+ V+TSL+ L+A+ G +  AE +F +M                          
Sbjct: 96  ELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAM----------------------- 132

Query: 63  LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
                  +D++    MI  Y +HG  + AL  + +M ++ +EP+  T  A+L AC     
Sbjct: 133 -------RDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDF 185

Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
           L  G+ IH +I  S++   N+ V  ALI MY+KCGSLKD++ +F  ++ KDVV WN+MI 
Sbjct: 186 LLDGKHIHKHILESKHFG-NISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIA 244

Query: 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIE 242
            Y ++G  KDA  LF+ MC +   P   TF  +L ACA    + +G R  +        +
Sbjct: 245 AYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDG-RMLHVRITARGFD 303

Query: 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
                   ++++ +R G +E A +    ++ + +   W T+L A
Sbjct: 304 RDFAMQNNLISMFTRCGSLESARRYFYSIE-KKELGAWNTMLAA 346



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 135/253 (53%), Gaps = 16/253 (6%)

Query: 47  MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
           ++  Y K      AR +FD +++++   W+++++ Y Q+ +  EAL +++ M+ +++  +
Sbjct: 8   IIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISID 67

Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
             T  +VL+AC ++  +E GR +    E     + +V V T+LI++++KCG L++A  VF
Sbjct: 68  AYTLSSVLAACTKLLDVEEGRMVQRKAEE-LGFEKDVVVATSLIHLFAKCGCLEEAESVF 126

Query: 167 DRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
             +   +D++   +MI  Y  HG    AL  + +M    L+P   T+  +L AC+    +
Sbjct: 127 RSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFL 186

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYG------CMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
            +G+        ++ +E K  H+G       ++ + ++ G ++++  L + M ++ D V 
Sbjct: 187 LDGKHI-----HKHILESK--HFGNISVRNALITMYAKCGSLKDSKSLFLTMDVK-DVVS 238

Query: 280 WGTLLGACRLHGN 292
           W  ++ A  L+G+
Sbjct: 239 WNAMIAAYTLYGH 251



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 38  QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
           ++ ++  T ++  YAK G +A A+  FD +  KDVV W+ MI   AQHG A EAL L   
Sbjct: 404 EKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHL 463

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  + +  NEVTA +VL AC   G L  G      +     I+ + +     I++  + G
Sbjct: 464 MNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAG 523

Query: 158 SLKDARLVFDRVNDK-DVVVWNSMIVGYAMHG 188
            LK+A  V   +  K   V   +++ G  +HG
Sbjct: 524 WLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 555



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 37/214 (17%)

Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
           +I MY KC S +DAR VFDR+  ++   W+ ++  Y  +   ++AL+++ EM R  +   
Sbjct: 8   IIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRKEISID 67

Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
             T   +L+AC     V EG R      +E   E  V     +++L ++ G +EEA  + 
Sbjct: 68  AYTLSSVLAACTKLLDVEEG-RMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVF 126

Query: 269 MDM-----------------------------------KIEPDSVLWGTLLGACRLHGNI 293
             M                                    +EPD+  +  +LGAC     +
Sbjct: 127 RSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFL 186

Query: 294 ALGEKIAEYLI-SQNLANSGTYVLLSNIYAAIGN 326
             G+ I ++++ S++  N      L  +YA  G+
Sbjct: 187 LDGKHIHKHILESKHFGNISVRNALITMYAKCGS 220


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/438 (41%), Positives = 277/438 (63%), Gaps = 3/438 (0%)

Query: 46  TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQH--GLANEALVLFRRMLAEKV 103
           +++  YA+ G +   +  FD +EEK +V W++M+  YAQ   G    A   F+ M AE +
Sbjct: 183 SVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGI 242

Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
           +P EVT V+ L AC  +  LE GR +H     S  ++ ++ +G  +INMY KCGS  DA+
Sbjct: 243 KPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAK 302

Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
           LVFD++ +K ++ WNS+IV YA +G   +AL    EM      P   T + +L   +HAG
Sbjct: 303 LVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAG 362

Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM-DMKIEPDSVLWGT 282
           L+  G   F +   ++ +EP      C+V+LL+R G ++ A +L++     + D++ W T
Sbjct: 363 LLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMT 422

Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
           LL AC+ +G+   G + AE +      +SG++V+L+N+YA++G W   +R+R +M+   V
Sbjct: 423 LLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSV 482

Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
           +KEPGCS IELS  VHEF++G+ +HPK +EI   LE++   ++  GYVP T  V+HD+ E
Sbjct: 483 KKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVEE 542

Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
             K+  L  HSE+LA+ FGL+ST+PG +I++VKNLRVC DCHA  K+IS   GR+I++RD
Sbjct: 543 GDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRD 602

Query: 463 RNRFHHFVNGTCSCGDYW 480
            +RFHHF +G CSCGD+W
Sbjct: 603 SSRFHHFKHGQCSCGDFW 620



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 175/350 (50%), Gaps = 5/350 (1%)

Query: 2   VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
           V   L  ++ +S SLV++Y +  DV  AEK+F  M  R +VS T ML  YA+ G  + A 
Sbjct: 37  VDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQAL 96

Query: 62  VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
            +F+ M  KD V WN +I+    +    +AL LF  M  E +  NE T +++L ACG + 
Sbjct: 97  HVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLE 156

Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
            L+  R IH+          +  VG +++NMY++CGSL D +  FD + +K +V W+ M+
Sbjct: 157 DLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIML 216

Query: 182 VGYAMH--GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
             YA    G G+ A + F EM    +KP ++TF+  L ACA    +  GR          
Sbjct: 217 AAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASG 276

Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN-IALGEK 298
            +E  +     ++N+  + G   +A KLV D   E   + W +L+ A   +G+ +     
Sbjct: 277 FVETSLVLGNTIINMYGKCGSPSDA-KLVFDQMPEKCLISWNSLIVAYAHNGHALEALSS 335

Query: 299 IAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
           + E L+     +SGT V +L  +  A     GV   R+ +++ G++   G
Sbjct: 336 LQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSG 385



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 98  MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157
           M  E   P++V  V  L AC   G L+ GR IHS + +S  +  N+ +  +L+NMY KC 
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDS-GLTSNIIISNSLVNMYGKCQ 59

Query: 158 SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
            +  A  VFD +  +DVV W +M+  YA +G    AL +F  M R      D+++  +++
Sbjct: 60  DVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPR----KDDVSWNAVIN 115

Query: 218 ACAHAGLVNEGRRFFNTMKDE 238
           A        +    F+ M+ E
Sbjct: 116 ASVGNSKFQDALELFHGMELE 136


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 276/437 (63%), Gaps = 2/437 (0%)

Query: 45  TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
           +T++  Y K GEV  AR  FD + +++VV W  ++  Y Q+G   E L LF +M  E   
Sbjct: 268 STLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTR 327

Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
           PNE T   +L+AC  + AL  G  +H  I  S   K ++ VG ALINMYSK G++  +  
Sbjct: 328 PNEFTFAVLLNACASLVALAYGDLLHGRIVMS-GFKNHLIVGNALINMYSKSGNIDSSYN 386

Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
           VF  + ++DV+ WN+MI GY+ HG GK AL +F +M      P+ +TFIG+LSAC H  L
Sbjct: 387 VFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLAL 446

Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV-MDMKIEPDSVLWGTL 283
           V EG  +F+ +  ++ +EP +EHY CMV LL RAG ++EA   +    +++ D V W TL
Sbjct: 447 VQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTL 506

Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343
           L AC +H N  LG++I E +I  +  + GTY LLSN++A    WDGV ++R LMKE+ ++
Sbjct: 507 LNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIK 566

Query: 344 KEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEK 403
           KEPG S +++ N  H F++    HP+S +I+  ++++   +K  GY P   +VLHD+ ++
Sbjct: 567 KEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDE 626

Query: 404 QKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDR 463
           QK+  L  HSEKLA+A+GL+   P   I+I+KNLR+C DCH   KLISK T R I++RD 
Sbjct: 627 QKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDA 686

Query: 464 NRFHHFVNGTCSCGDYW 480
           NRFHHF  G C+C D+W
Sbjct: 687 NRFHHFREGLCTCNDHW 703



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 153/309 (49%), Gaps = 27/309 (8%)

Query: 51  YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
           Y++   V +A  + D +   DV  +N ++    + G   EA  + +RM+ E V  + VT 
Sbjct: 173 YSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTY 232

Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
           V+VL  C QI  L+ G  IH+ +  +  +  +V V + LI+ Y KCG + +AR  FD + 
Sbjct: 233 VSVLGLCAQIRDLQLGLQIHAQLLKT-GLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLR 291

Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-----GLV 225
           D++VV W +++  Y  +G  ++ L LF +M     +P++ TF  LL+ACA       G +
Sbjct: 292 DRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDL 351

Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
             GR   +  K+   +         ++N+ S++G ++ +Y +  +M +  D + W  ++ 
Sbjct: 352 LHGRIVMSGFKNHLIVG------NALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMIC 404

Query: 286 ACRLHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNW----DGVARVRTLMK 338
               HG   LG++    L+ Q++ ++G    YV    + +A  +     +G      +MK
Sbjct: 405 GYSHHG---LGKQ--ALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMK 459

Query: 339 EKGVQKEPG 347
           +  V  EPG
Sbjct: 460 KFDV--EPG 466



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 149/345 (43%), Gaps = 40/345 (11%)

Query: 35  TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94
           T     +  + +++  Y+K G+   AR LFD M +++VV W+ ++ GY   G   E L L
Sbjct: 55  TSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGL 114

Query: 95  FRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153
           FR +++ +   PNE     VLS C   G ++ G+  H Y+  S  + ++  V  ALI+MY
Sbjct: 115 FRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKS-GLLLHQYVKNALIHMY 173

Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
           S+C  +  A  + D V   DV  +NS++      G   +A Q+   M    +    +T++
Sbjct: 174 SRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYV 233

Query: 214 GLLSACA-----------HAGLVNEGRRF----FNTMKDEYAI---------------EP 243
            +L  CA           HA L+  G  F     +T+ D Y                 + 
Sbjct: 234 SVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDR 293

Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE---PDSVLWGTLLGACRLHGNIALGEKIA 300
            V  +  ++    + G  EE   L   M++E   P+   +  LL AC     +A G+ + 
Sbjct: 294 NVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLH 353

Query: 301 EYLISQNLANS---GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
             ++     N    G  ++  N+Y+  GN D    V + M  + V
Sbjct: 354 GRIVMSGFKNHLIVGNALI--NMYSKSGNIDSSYNVFSNMMNRDV 396



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 11/199 (5%)

Query: 24  GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
           GD+L    + +      +V    ++  Y+K G + ++  +F +M  +DV+ WN MI GY+
Sbjct: 349 GDLLHGRIVMSGFKNHLIVG-NALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYS 407

Query: 84  QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV 143
            HGL  +AL++F+ M++    PN VT + VLSAC  +  ++ G +    I    +++  +
Sbjct: 408 HHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGL 467

Query: 144 QVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGYAMH---GFGKDALQLFN 198
           +  T ++ +  + G L +A            DVV W +++    +H     GK   +   
Sbjct: 468 EHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETV- 526

Query: 199 EMCRIRLKPSDITFIGLLS 217
               I++ P D+    LLS
Sbjct: 527 ----IQMDPHDVGTYTLLS 541



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 18/239 (7%)

Query: 95  FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS--YIENSRNIKVNVQVGTALINM 152
           F   L       EV  +   SA  +  +L  G+ IH+   + N  +   ++    +LIN+
Sbjct: 13  FSMYLPHPCSLKEVVNLLKFSATAK--SLRFGKTIHAQLVVRNQTSKDSDITQINSLINL 70

Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDIT 211
           YSKCG  K AR +FDR+  ++VV W+++++GY   G   + L LF  +  +    P++  
Sbjct: 71  YSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYI 130

Query: 212 FIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           F  +LS CA +G V EG++     +K    +   V++   ++++ SR   V+ A + ++D
Sbjct: 131 FTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKN--ALIHMYSRCFHVDSAMQ-ILD 187

Query: 271 MKIEPDSVLWGTLLGA-----CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
                D   + ++L A     CR      L   + E +I     +S TYV +  + A I
Sbjct: 188 TVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVI----WDSVTYVSVLGLCAQI 242


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/511 (39%), Positives = 299/511 (58%), Gaps = 39/511 (7%)

Query: 6   LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG---------- 55
           L ++ +V  ++ D+YA+ GD+  A  LF  M  +++VS   M++ Y K G          
Sbjct: 186 LGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFN 245

Query: 56  -------------------------EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANE 90
                                     V  AR LF  + +KD +CW  MI GYAQ+G   +
Sbjct: 246 EMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREED 305

Query: 91  ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
           A +LF  ML   V+P+  T  +++S+C ++ +L  G+ +H  +     I  ++ V +AL+
Sbjct: 306 AWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVV-VMGIDNSMLVSSALV 364

Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210
           +MY KCG   DAR++F+ +  ++V+ WN+MI+GYA +G   +AL L+  M +   KP +I
Sbjct: 365 DMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNI 424

Query: 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270
           TF+G+LSAC +A +V EG+++F+++  E+ I P ++HY CM+ LL R+G V++A  L+  
Sbjct: 425 TFVGVLSACINADMVKEGQKYFDSIS-EHGIAPTLDHYACMITLLGRSGSVDKAVDLIQG 483

Query: 271 MKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330
           M  EP+  +W TLL  C   G++   E  A +L   +  N+G Y++LSN+YAA G W  V
Sbjct: 484 MPHEPNYRIWSTLLSVCA-KGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDV 542

Query: 331 ARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390
           A VR+LMKEK  +K    S +E+ NKVH F++ D  HP+  +IY  L  +   L+  GY 
Sbjct: 543 AVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYN 602

Query: 391 PQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS-IKIVKNLRVCPDCHAVFKL 449
           P T IVLH++GE++K  S+  HSEKLA+AF LI    G + I+I+KN+RVC DCH   K 
Sbjct: 603 PDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKF 662

Query: 450 ISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
            S    R I+MRD NRFHHF  G CSC D W
Sbjct: 663 ASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 164/309 (53%), Gaps = 13/309 (4%)

Query: 8   KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
           KD ++   L+ LYA+ G +  A+ +F  M +R + S  T+L+ YAK G V    V+FD M
Sbjct: 56  KDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQM 115

Query: 68  EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127
             +D V +N +I  +A +G + +AL +  RM  +  +P + + V  L AC Q+  L  G+
Sbjct: 116 PYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGK 175

Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
            IH  I  + ++  N  V  A+ +MY+KCG +  ARL+FD + DK+VV WN MI GY   
Sbjct: 176 QIHGRIVVA-DLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKM 234

Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM--KDEYAIEPKV 245
           G   + + LFNEM    LKP  +T   +L+A    G V++ R  F  +  KDE       
Sbjct: 235 GNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEIC----- 289

Query: 246 EHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302
             +  M+   ++ G+ E+A+ L  DM    ++PDS    +++ +C    ++  G+ +   
Sbjct: 290 --WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGK 347

Query: 303 LISQNLANS 311
           ++   + NS
Sbjct: 348 VVVMGIDNS 356



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 33/182 (18%)

Query: 1   TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
            V   +D  + VS++LVD+Y + G  L A  +F TMP R++++   M+  YA+ G+V   
Sbjct: 348 VVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVL-- 405

Query: 61  RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
                                        EAL L+ RM  E  +P+ +T V VLSAC   
Sbjct: 406 -----------------------------EALTLYERMQQENFKPDNITFVGVLSACINA 436

Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
             ++ G+     I +   I   +     +I +  + GS+  A  L+    ++ +  +W++
Sbjct: 437 DMVKEGQKYFDSI-SEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWST 495

Query: 180 MI 181
           ++
Sbjct: 496 LL 497


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,092,657,162
Number of Sequences: 23463169
Number of extensions: 282326421
Number of successful extensions: 798589
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8044
Number of HSP's successfully gapped in prelim test: 3746
Number of HSP's that attempted gapping in prelim test: 652694
Number of HSP's gapped (non-prelim): 56274
length of query: 480
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 334
effective length of database: 8,933,572,693
effective search space: 2983813279462
effective search space used: 2983813279462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)