BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038395
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
+DKDL S+ D G ++ E++ A MP++ + +L C ++ A+
Sbjct: 182 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEE---TAS 238
Query: 61 RVLFDDMEEKDVVCWNVM-----IDGYAQHGLANEALVLFRRM-------LAEKVEPNEV 108
+L D + E NV+ ID AQH LA E +V RR+ LA+ N +
Sbjct: 239 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 298
Query: 109 TAVAVLSA 116
A+A LSA
Sbjct: 299 AAIAALSA 306
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
+DKDL S+ D G ++ E++ A MP++ + +L C ++ A+
Sbjct: 188 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEE---TAS 244
Query: 61 RVLFDDMEEKDVVCWNVM-----IDGYAQHGLANEALVLFRRM-------LAEKVEPNEV 108
+L D + E NV+ ID AQH LA E +V RR+ LA+ N +
Sbjct: 245 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 304
Query: 109 TAVAVLSA 116
T + LSA
Sbjct: 305 TNIKDLSA 312
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
+DKDL S+ D G ++ E++ A MP++ + +L C ++ A+
Sbjct: 182 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEE---TAS 238
Query: 61 RVLFDDMEEKDVVCWNVM-----IDGYAQHGLANEALVLFRRM-------LAEKVEPNEV 108
+L D + E NV+ ID AQH LA E +V RR+ LA+ N +
Sbjct: 239 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 298
Query: 109 TAVAVLSA 116
T + LSA
Sbjct: 299 TNIKDLSA 306
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
+DKDL S+ D G ++ E++ A MP++ + +L C ++ A+
Sbjct: 182 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEE---TAS 238
Query: 61 RVLFDDMEEKDVVCWNVM-----IDGYAQHGLANEALVLFRRM-------LAEKVEPNEV 108
+L D + E NV+ ID AQH LA E +V RR+ LA+ N +
Sbjct: 239 EMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVI 298
Query: 109 TAVAVLSA 116
T + LSA
Sbjct: 299 TNIKDLSA 306
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 36/147 (24%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYA--KQGEVA 58
+DKDL S+ D G ++ E++ A MP++ + +L C K+ E
Sbjct: 188 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETD 247
Query: 59 A-------ARVL-FDDMEEK---DVVC------WNVM-----IDGYAQHGLANEALVLFR 96
A A+++ F + EEK D+V NV+ ID AQH LA E +V R
Sbjct: 248 AEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAAR 307
Query: 97 RM-------LAEKVEPNEVTAVAVLSA 116
R+ LA+ N + A+A LSA
Sbjct: 308 RVKKSDMEKLAKATGANVIAAIAALSA 334
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 36/147 (24%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYA--KQGEVA 58
+DKDL S+ D G ++ E++ A MP++ + +L C K+ E
Sbjct: 182 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETD 241
Query: 59 A-------ARVL-FDDMEEK---DVVC------WNVM-----IDGYAQHGLANEALVLFR 96
A A+++ F + EEK D+V NV+ ID AQH LA E +V R
Sbjct: 242 AEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAAR 301
Query: 97 RM-------LAEKVEPNEVTAVAVLSA 116
R+ LA+ N + A+A LSA
Sbjct: 302 RVKKSDMEKLAKATGANVIAAIAALSA 328
>pdb|2AAF|A Chain A, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|B Chain B, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|C Chain C, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|D Chain D, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
Length = 418
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
M NLL+ Q EA K ++D KI DSV G L R K+AEYLI
Sbjct: 72 MHNLLTETIQNPEALKWILDRKITADSVGLG-LTSELRSWLESLEPRKLAEYLI 124
>pdb|2ABR|A Chain A, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|B Chain B, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|C Chain C, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|D Chain D, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
Length = 418
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
M NLL+ Q EA K ++D KI DSV G L R K+AEYLI
Sbjct: 72 MHNLLTETIQNPEALKWILDRKITADSVGLG-LTSELRSWLESLEPRKLAEYLI 124
>pdb|2A9G|A Chain A, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|B Chain B, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|C Chain C, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|D Chain D, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
Length = 418
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
M NLL+ Q EA K ++D KI DSV G L R K+AEYLI
Sbjct: 72 MHNLLTETIQNPEALKWILDRKITADSVGLG-LTSELRSWLESLEPRKLAEYLI 124
>pdb|2ACI|A Chain A, Structure Of D166a Arginine Deiminase
pdb|2ACI|B Chain B, Structure Of D166a Arginine Deiminase
pdb|2ACI|C Chain C, Structure Of D166a Arginine Deiminase
pdb|2ACI|D Chain D, Structure Of D166a Arginine Deiminase
Length = 418
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
M NLL+ Q EA K ++D KI DSV G L R K+AEYLI
Sbjct: 72 MHNLLTETIQNPEALKWILDRKITADSVGLG-LTSELRSWLESLEPRKLAEYLI 124
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 26/133 (19%)
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI-------ELSNKVHEFLAGDLR 366
YVL A + N +G T++ E G + P S + E S E L GDL
Sbjct: 155 YVLSEEFDAPVQNVEG-----TILGEHGDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL- 208
Query: 367 HPKSKEIYMMLEEING---WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
+E M + E G W A G + +LHD GE + S KL FG
Sbjct: 209 ----QESAMDVIERKGATEWGPARGVAHMVEAILHDTGE------VLPASVKLEGEFGHE 258
Query: 424 STQPGTSIKIVKN 436
T G +++ N
Sbjct: 259 DTAFGVPVRLGSN 271
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 26/133 (19%)
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI-------ELSNKVHEFLAGDLR 366
YVL A + N +G T++ E G + P S + E S E L GDL
Sbjct: 154 YVLSEEFDAPVQNVEG-----TILGEHGDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL- 207
Query: 367 HPKSKEIYMMLEEING---WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
+E M + E G W A G + +LHD GE + S KL FG
Sbjct: 208 ----QESAMDVIERKGATEWGPARGVAHMVEAILHDTGE------VLPASVKLEGEFGHE 257
Query: 424 STQPGTSIKIVKN 436
T G +++ N
Sbjct: 258 DTAFGVPVRLGSN 270
>pdb|1RXX|A Chain A, Structure Of Arginine Deiminase
pdb|1RXX|B Chain B, Structure Of Arginine Deiminase
pdb|1RXX|C Chain C, Structure Of Arginine Deiminase
pdb|1RXX|D Chain D, Structure Of Arginine Deiminase
Length = 421
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
NLL+ Q EA K ++D KI DSV G L R K+AEYLI
Sbjct: 77 NLLTETIQNPEALKWILDRKITADSVGLG-LTSELRSWLESLEPRKLAEYLI 127
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 36/147 (24%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYA--KQGEVA 58
+DKDL S+ D G ++ E++ A MP++ + +L C K+ E
Sbjct: 188 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETD 247
Query: 59 A-------ARVL-FDDMEEK---DVVC------WNVM-----IDGYAQHGLANEALVLFR 96
A A+++ F + EEK D+V NV+ ID AQH LA E +V R
Sbjct: 248 AEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAAR 307
Query: 97 RM-------LAEKVEPNEVTAVAVLSA 116
R+ LA+ N +T + LSA
Sbjct: 308 RVKKSDMEKLAKATGANVITNIKDLSA 334
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 36/147 (24%)
Query: 6 LDKDLY-----VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYA--KQGEVA 58
+DKDL S+ D G ++ E++ A MP++ + +L C K+ E
Sbjct: 182 VDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETD 241
Query: 59 A-------ARVL-FDDMEEK---DVVC------WNVM-----IDGYAQHGLANEALVLFR 96
A A+++ F + EEK D+V NV+ ID AQH LA E +V R
Sbjct: 242 AEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAAR 301
Query: 97 RM-------LAEKVEPNEVTAVAVLSA 116
R+ LA+ N +T + LSA
Sbjct: 302 RVKKSDMEKLAKATGANVITNIKDLSA 328
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLA----NSGTYVLLSNIYAAIGNWDGVARVRT 335
W + LG C L G+K + + Q L N G L I A G DG R RT
Sbjct: 551 WQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELR-RT 609
Query: 336 LM-----KEKGVQKEPGCSSIELSNK 356
L K + + K P IE +K
Sbjct: 610 LQSLACGKARVLAKNPKGKDIEDGDK 635
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLA----NSGTYVLLSNIYAAIGNWDGVARVRT 335
W + LG C L G+K + + Q L N G L I A G DG R RT
Sbjct: 536 WQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELR-RT 594
Query: 336 LM-----KEKGVQKEPGCSSIELSNKVHEFLAGD 364
L K + + K P IE +K F+ D
Sbjct: 595 LQSLACGKARVLAKNPKGKDIEDGDK---FICND 625
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 26/133 (19%)
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI-------ELSNKVHEFLAGDLR 366
YVL A + N +G T++ E G + P S + E S E L GDL
Sbjct: 155 YVLSEEFDAPVQNVEG-----TILGEHGDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL- 208
Query: 367 HPKSKEIYMMLEEING---WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
+E M + E G W A G + +LHD GE + S KL FG
Sbjct: 209 ----QESAMDVIERKGATEWGPARGVAHMVEAILHDTGE------VLPASVKLEGEFGHE 258
Query: 424 STQPGTSIKIVKN 436
T G + + N
Sbjct: 259 DTAFGVPVSLGSN 271
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 26/133 (19%)
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSI-------ELSNKVHEFLAGDLR 366
YVL A + N +G T++ E G + P S + E S E L GDL
Sbjct: 154 YVLSEEFDAPVQNVEG-----TILGEHGDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL- 207
Query: 367 HPKSKEIYMMLEEING---WLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLI 423
+E M + E G W A G + +LHD GE + S KL FG
Sbjct: 208 ----QESAMDVIERKGATEWGPARGVAHMVEAILHDTGE------VLPASVKLEGEFGHE 257
Query: 424 STQPGTSIKIVKN 436
T G + + N
Sbjct: 258 DTAFGVPVSLGSN 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,632,726
Number of Sequences: 62578
Number of extensions: 539683
Number of successful extensions: 1355
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 19
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)