BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038395
(480 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/481 (64%), Positives = 395/481 (82%), Gaps = 3/481 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+KF L D YV+T LVD+YA+GGDV+SA+K+F MP+RSLVS T M+TCYAKQG V AAR
Sbjct: 153 LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAAR 212
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQI 120
LFD M E+D+V WNVMIDGYAQHG N+AL+LF+++LAE K +P+E+T VA LSAC QI
Sbjct: 213 ALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQI 272
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GALE+GRWIH ++++SR I++NV+V T LI+MYSKCGSL++A LVF+ KD+V WN+M
Sbjct: 273 GALETGRWIHVFVKSSR-IRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAM 331
Query: 181 IVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239
I GYAMHG+ +DAL+LFNEM I L+P+DITFIG L ACAHAGLVNEG R F +M EY
Sbjct: 332 IAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEY 391
Query: 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299
I+PK+EHYGC+V+LL RAGQ++ AY+ + +M ++ DSVLW ++LG+C+LHG+ LG++I
Sbjct: 392 GIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEI 451
Query: 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHE 359
AEYLI N+ NSG YVLLSNIYA++G+++GVA+VR LMKEKG+ KEPG S+IE+ NKVHE
Sbjct: 452 AEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHE 511
Query: 360 FLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVA 419
F AGD H KSKEIY ML +I+ +K+ GYVP T VL D+ E +K+ SL+VHSE+LA+A
Sbjct: 512 FRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIA 571
Query: 420 FGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDY 479
+GLIST+PG+ +KI KNLRVC DCH V KLISK TGRKI+MRDRNRFHHF +G+CSCGD+
Sbjct: 572 YGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDF 631
Query: 480 W 480
W
Sbjct: 632 W 632
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 135/272 (49%), Gaps = 37/272 (13%)
Query: 51 YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
YA G++ + LF + D+ + I+ + +GL ++A +L+ ++L+ ++ PNE T
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 111 VAVLSACGQIGALESGRWIHSYIEN------------------------------SRNIK 140
++L +C + +SG+ IH+++ R +
Sbjct: 134 SSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 141 VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE- 199
++ TA+I Y+K G+++ AR +FD + ++D+V WN MI GYA HGF DAL LF +
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
+ + KP +IT + LSAC+ G + G R+ + I V+ ++++ S+ G
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308
Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
+EEA LV + D V W ++ +HG
Sbjct: 309 SLEEAV-LVFNDTPRKDIVAWNAMIAGYAMHG 339
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/494 (45%), Positives = 330/494 (66%), Gaps = 15/494 (3%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLF-ATMPQRSLVSLT-------------T 46
+K+ D +V ++LV +Y G + A LF + ++ +V +T
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
M+ Y + G+ AAR+LFD M ++ VV WN MI GY+ +G +A+ +FR M + PN
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
VT V+VL A ++G+LE G W+H Y E+S I+++ +G+ALI+MYSKCG ++ A VF
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDS-GIRIDDVLGSALIDMYSKCGIIEKAIHVF 332
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
+R+ ++V+ W++MI G+A+HG DA+ F +M + ++PSD+ +I LL+AC+H GLV
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392
Query: 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
EGRR+F+ M +EP++EHYGCMV+LL R+G ++EA + +++M I+PD V+W LLGA
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452
Query: 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
CR+ GN+ +G+++A L+ +SG YV LSN+YA+ GNW V+ +R MKEK ++K+P
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDP 512
Query: 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQ 406
GCS I++ +HEF+ D HPK+KEI ML EI+ L+ GY P T VL ++ E+ K+
Sbjct: 513 GCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKE 572
Query: 407 NSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRF 466
N L HSEK+A AFGLIST PG I+IVKNLR+C DCH+ KLISK RKI +RDR RF
Sbjct: 573 NVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 632
Query: 467 HHFVNGTCSCGDYW 480
HHF +G+CSC DYW
Sbjct: 633 HHFQDGSCSCMDYW 646
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 137/280 (48%), Gaps = 49/280 (17%)
Query: 60 ARVLFDDMEEKDVVCWNVMIDGYAQ--HGLANEALVLFRRMLAEK-VEPNEVTAVAVLSA 116
A +F+ M +++ WN +I G+++ A A+ LF M++++ VEPN T +VL A
Sbjct: 78 AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA 137
Query: 117 CGQIGALESGRWIH-------------------------SYIENSRN------IKVNVQV 145
C + G ++ G+ IH +++++R I+ ++ V
Sbjct: 138 CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197
Query: 146 GT-------------ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
T +I+ Y + G K AR++FD++ + VV WN+MI GY+++GF KD
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257
Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
A+++F EM + ++P+ +T + +L A + G + G + + ++ I ++
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALI 316
Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
++ S+ G +E+A + + E + + W ++ +HG
Sbjct: 317 DMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIHGQ 355
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust.
Identities = 219/474 (46%), Positives = 321/474 (67%), Gaps = 3/474 (0%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
+L ++ +++D+Y + G + A++LF M ++ V+ TTML YA + AAR + + M
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGR 127
+KD+V WN +I Y Q+G NEAL++F + L + ++ N++T V+ LSAC Q+GALE GR
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
WIHSYI+ I++N V +ALI+MYSKCG L+ +R VF+ V +DV VW++MI G AMH
Sbjct: 386 WIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
G G +A+ +F +M +KP+ +TF + AC+H GLV+E F+ M+ Y I P+ +H
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504
Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
Y C+V++L R+G +E+A K + M I P + +WG LLGAC++H N+ L E L+
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564
Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRH 367
N G +VLLSNIYA +G W+ V+ +R M+ G++KEPGCSSIE+ +HEFL+GD H
Sbjct: 565 PRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAH 624
Query: 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ-KQNSLEVHSEKLAVAFGLISTQ 426
P S+++Y L E+ LK+ GY P+ VL I E++ K+ SL +HSEKLA+ +GLIST+
Sbjct: 625 PMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTE 684
Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
I+++KNLRVC DCH+V KLIS+ R+I++RDR RFHHF NG CSC D+W
Sbjct: 685 APKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 173/328 (52%), Gaps = 39/328 (11%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
+++ CY G++ +A +F ++EKDVV WN MI+G+ Q G ++AL LF++M +E V+
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
+ VT V VLSAC +I LE GR + SYIE +R + VN+ + A+++MY+KCGS++DA+
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR-VNVNLTLANAMLDMYTKCGSIEDAKR 288
Query: 165 VFDRVNDKDVVVWNSMIVGYAM-------------------------------HGFGKDA 193
+FD + +KD V W +M+ GYA+ +G +A
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348
Query: 194 LQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
L +F+E+ + +K + IT + LSACA G + GR + +K ++ I ++
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK-KHGIRMNFHVTSALI 407
Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-S 311
++ S+ G +E++ ++ ++ + D +W ++G +HG G + + AN
Sbjct: 408 HMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVK 463
Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKE 339
V +N++ A + V +L +
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQ 491
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 17/262 (6%)
Query: 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYA 83
D SA KLFA S SL AR +FD++ + + WN +I YA
Sbjct: 60 SDPYSASKLFAMAALSSFASLEY-------------ARKVFDEIPKPNSFAWNTLIRAYA 106
Query: 84 QHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
++ F M++E + PN+ T ++ A ++ +L G+ +H S + +
Sbjct: 107 SGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA-VGSD 165
Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
V V +LI+ Y CG L A VF + +KDVV WNSMI G+ G AL+LF +M
Sbjct: 166 VFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 225
Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262
+K S +T +G+LSACA + GR+ + + +E + + M+++ ++ G +E
Sbjct: 226 EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI-EENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 263 EAYKLVMDMKIEPDSVLWGTLL 284
+A +L M+ E D+V W T+L
Sbjct: 285 DAKRLFDAME-EKDNVTWTTML 305
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/484 (46%), Positives = 326/484 (67%), Gaps = 8/484 (1%)
Query: 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
F LDKD +V TSL+++Y+ GD+ SA+++F + L + +++ YAK G + AR L
Sbjct: 91 FGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKL 150
Query: 64 FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-----VEPNEVTAVAVLSACG 118
FD+M E++V+ W+ +I+GY G EAL LFR M K V PNE T VLSACG
Sbjct: 151 FDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACG 210
Query: 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVW 177
++GALE G+W+H+YI+ ++++++ +GTALI+MY+KCGSL+ A+ VF+ + + KDV +
Sbjct: 211 RLGALEQGKWVHAYIDKY-HVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAY 269
Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
++MI AM+G + QLF+EM + P+ +TF+G+L AC H GL+NEG+ +F M
Sbjct: 270 SAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMI 329
Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
+E+ I P ++HYGCMV+L R+G ++EA + M +EPD ++WG+LL R+ G+I
Sbjct: 330 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 389
Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
E + LI + NSG YVLLSN+YA G W V +R M+ KG+ K PGCS +E+
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGV 449
Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
VHEF+ GD +S+ IY ML+EI L+ GYV T+ VL D+ EK K+ +L HSEKL
Sbjct: 450 VHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKL 509
Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
A+AF L+ T+PGT ++I+KNLR+C DCH V K+ISK R+I++RD NRFHHF +G+CSC
Sbjct: 510 AIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSC 569
Query: 477 GDYW 480
D+W
Sbjct: 570 RDFW 573
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
K+ ++ D+ + T+L+D+YA+ G + A+++F + +
Sbjct: 227 KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK----------------------- 263
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIG 121
KDV ++ MI A +GL +E LF M ++ + PN VT V +L AC G
Sbjct: 264 -------KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRG 316
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
+ G+ + I ++Q ++++Y + G +K+A + + DV++W S+
Sbjct: 317 LINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSL 376
Query: 181 IVGYAMHG 188
+ G M G
Sbjct: 377 LSGSRMLG 384
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 211/436 (48%), Positives = 295/436 (67%), Gaps = 1/436 (0%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T + T Y+K E+ +AR LFD+ EK + WN MI GY Q+GL +A+ LFR M +
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PN VT +LSAC Q+GAL G+W+H + S + + ++ V TALI MY+KCGS+ +AR
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVR-STDFESSIYVSTALIGMYAKCGSIAEARR 476
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+FD + K+ V WN+MI GY +HG G++AL +F EM + P+ +TF+ +L AC+HAGL
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
V EG FN+M Y EP V+HY CMV++L RAG ++ A + + M IEP S +W TLL
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLL 596
Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
GACR+H + L ++E L + N G +VLLSNI++A N+ A VR K++ + K
Sbjct: 597 GACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAK 656
Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
PG + IE+ H F +GD HP+ KEIY LE++ G ++ GY P+T++ LHD+ E++
Sbjct: 657 APGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEE 716
Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
++ ++VHSE+LA+AFGLI+T+PGT I+I+KNLRVC DCH V KLISK T R I++RD N
Sbjct: 717 RELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDAN 776
Query: 465 RFHHFVNGTCSCGDYW 480
RFHHF +G CSCGDYW
Sbjct: 777 RFHHFKDGVCSCGDYW 792
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 6/249 (2%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
LT ++ Y+K G++ LF + + D+V +N MI GY +G +L LF+ ++
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
T V+++ G + + + IH Y S N + V TAL +YSK ++ AR
Sbjct: 319 RLRSSTLVSLVPVSGHLMLIYA---IHGYCLKS-NFLSHASVSTALTTVYSKLNEIESAR 374
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
+FD +K + WN+MI GY +G +DA+ LF EM + P+ +T +LSACA G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434
Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
++ G+ + ++ E + ++ + ++ G + EA +L D+ + + V W T+
Sbjct: 435 ALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRL-FDLMTKKNEVTWNTM 492
Query: 284 LGACRLHGN 292
+ LHG
Sbjct: 493 ISGYGLHGQ 501
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 45/334 (13%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK-V 103
+ ++ Y K V AR +FD M EKD + WN MI GY ++ + E++ +FR ++ E
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
+ T + +L A ++ L G IHS + + V T I++YSKCG +K
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHS-LATKTGCYSHDYVLTGFISLYSKCGKIKMGS 276
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
+F D+V +N+MI GY +G + +L LF E+ + T + L+ H
Sbjct: 277 ALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM 336
Query: 224 LV-----------------------------NE---GRRFFNTMKDEYAIEPKVEHYGCM 251
L+ NE R+ F DE + E + + M
Sbjct: 337 LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLF----DE-SPEKSLPSWNAM 391
Query: 252 VNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
++ ++ G E+A L +M+ P+ V +L AC G ++LG+ + + + S +
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451
Query: 309 ANSGTYV--LLSNIYAAIGNWDGVARVRTLMKEK 340
S YV L +YA G+ R+ LM +K
Sbjct: 452 -ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 151/350 (43%), Gaps = 52/350 (14%)
Query: 39 RSLVSLTTMLTC-YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
R+ +SL T LT + G + AR +F ++ DV +NV++ G++ + + +L +F
Sbjct: 49 RNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAH 108
Query: 98 ML-AEKVEPNEVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALINMYS 154
+ + ++PN T +SA +GR IH + ++ + + +G+ ++ MY
Sbjct: 109 LRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDS---ELLLGSNIVKMYF 165
Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF----NEMC--------- 201
K ++DAR VFDR+ +KD ++WN+MI GY + +++Q+F NE C
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 202 ----------RIRL-------------KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
+RL D G +S + G + G F +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-- 283
Query: 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
+P + Y M++ + G+ E + L ++ + + TL+ + G++ L
Sbjct: 284 ---KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA 340
Query: 299 IAEYLISQN-LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
I Y + N L+++ L+ +Y+ + + R L E + P
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNE---IESARKLFDESPEKSLPS 387
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 34/213 (15%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
+ +YVST+L+ +YA+ G + A +LF M +++ V+ TM
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTM------------------ 492
Query: 66 DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
I GY HG EAL +F ML + P VT + VL AC G ++
Sbjct: 493 -------------ISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539
Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
G I + + + + +V+ ++++ + G L+ A + ++ + VW +++
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
+H A + ++ L P ++ + LLS
Sbjct: 600 RIHKDTNLARTVSEKL--FELDPDNVGYHVLLS 630
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/480 (45%), Positives = 313/480 (65%), Gaps = 2/480 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
K + D+Y SL++ YA G+ A LF +P+ VS +++ Y K G++ A
Sbjct: 142 TKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIAL 201
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
LF M EK+ + W MI GY Q + EAL LF M VEP+ V+ LSAC Q+G
Sbjct: 202 TLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 261
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
ALE G+WIHSY+ +R I+++ +G LI+MY+KCG +++A VF + K V W ++I
Sbjct: 262 ALEQGKWIHSYLNKTR-IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALI 320
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
GYA HG G++A+ F EM ++ +KP+ ITF +L+AC++ GLV EG+ F +M+ +Y +
Sbjct: 321 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNL 380
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
+P +EHYGC+V+LL RAG ++EA + + +M ++P++V+WG LL ACR+H NI LGE+I E
Sbjct: 381 KPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGE 440
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
LI+ + + G YV +NI+A WD A R LMKE+GV K PGCS+I L HEFL
Sbjct: 441 ILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500
Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD-IGEKQKQNSLEVHSEKLAVAF 420
AGD HP+ ++I + L+ GYVP+ + +L D + + +++ + HSEKLA+ +
Sbjct: 501 AGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITY 560
Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
GLI T+PGT I+I+KNLRVC DCH V KLISK R I+MRDR RFHHF +G CSCGDYW
Sbjct: 561 GLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 161/359 (44%), Gaps = 42/359 (11%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDV--LSAEKLFATMPQRSLVSLTTMLTCYAKQGE-- 56
+ FSL+ +LY + S + ++ ++ + A L + Q S + C +
Sbjct: 5 SCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64
Query: 57 VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
+ A+++FD + D WN+MI G++ +L+L++RML N T ++L A
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
C + A E IH+ I + +V +LIN Y+ G+ K A L+FDR+ + D V
Sbjct: 125 CSNLSAFEETTQIHAQI-TKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVS 183
Query: 177 WNSMIVGYAMHG-------------------------------FGKDALQLFNEMCRIRL 205
WNS+I GY G K+ALQLF+EM +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243
Query: 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC-MVNLLSRAGQVEEA 264
+P +++ LSACA G + +G+ + + V GC ++++ ++ G++EEA
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEEA 301
Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
++ ++K + W L+ HG+ E I++++ Q + + + + A
Sbjct: 302 LEVFKNIK-KKSVQAWTALISGYAYHGHGR--EAISKFMEMQKMGIKPNVITFTAVLTA 357
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/438 (49%), Positives = 305/438 (69%), Gaps = 1/438 (0%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
+ ++ Y+K GE+ A LF+ + KDV+ WN +I GY L EAL+LF+ ML
Sbjct: 304 VNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCGSLKDA 162
PN+VT +++L AC +GA++ GRWIH YI+ + + + T+LI+MY+KCG ++ A
Sbjct: 364 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAA 423
Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
VF+ + K + WN+MI G+AMHG + LF+ M +I ++P DITF+GLLSAC+H+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHS 483
Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
G+++ GR F TM +Y + PK+EHYGCM++LL +G +EA +++ M++EPD V+W +
Sbjct: 484 GMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCS 543
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
LL AC++HGN+ LGE AE LI N G+YVLLSNIYA+ G W+ VA+ R L+ +KG+
Sbjct: 544 LLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGM 603
Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
+K PGCSSIE+ + VHEF+ GD HP+++EIY MLEE+ L+ G+VP T VL ++ E
Sbjct: 604 KKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEE 663
Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
+ K+ +L HSEKLA+AFGLIST+PGT + IVKNLRVC +CH KLISK R+I+ RD
Sbjct: 664 EWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 723
Query: 463 RNRFHHFVNGTCSCGDYW 480
R RFHHF +G CSC DYW
Sbjct: 724 RTRFHHFRDGVCSCNDYW 741
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 187/356 (52%), Gaps = 41/356 (11%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K D DLYV TSL+ +Y + G + A K+F P R +VS T ++ YA +G + A+
Sbjct: 161 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQ 220
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
LFD++ KDVV WN MI GYA+ G EAL LF+ M+ V P+E T V V+SAC Q G
Sbjct: 221 KLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 280
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
++E GR +H +I++ N+++ ALI++YSKCG L+ A +F+R+ KDV+ WN++I
Sbjct: 281 SIELGRQVHLWIDD-HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLI 339
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR------------ 229
GY K+AL LF EM R P+D+T + +L ACAH G ++ GR
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399
Query: 230 -----RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
++ D YA + + + M+ + G+ + ++ L
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFS 459
Query: 270 DMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----AEYLISQNLANSGTYVLL 317
M+ I+PD + + LL AC G + LG I +Y ++ L + G + L
Sbjct: 460 RMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 34/255 (13%)
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
+F ++E +++ WN M G+A AL L+ M++ + PN T VL +C + A
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR-------------- 168
+ G+ IH ++ +++ V T+LI+MY + G L+DA VFD+
Sbjct: 150 FKEGQQIHGHVLK-LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 169 -----------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
+ KDVV WN+MI GYA G K+AL+LF +M + ++P + T
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268
Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271
+ ++SACA +G + GR+ + D++ ++ +++L S+ G++E A L +
Sbjct: 269 MVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERL 327
Query: 272 KIEPDSVLWGTLLGA 286
+ D + W TL+G
Sbjct: 328 PYK-DVISWNTLIGG 341
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
VF + + ++++WN+M G+A+ AL+L+ M + L P+ TF +L +CA +
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGC---------MVNLLSRAGQVEEAYKLVMDMKIEP 275
EG++ I V GC ++++ + G++E+A+K V D
Sbjct: 150 FKEGQQ----------IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK-VFDKSPHR 198
Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
D V + L+ G I +K+ + + +++ + + + YA GN+ +
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI---SGYAETGNYKEALELFK 255
Query: 336 LMKEKGVQKE--------PGCS---SIELSNKVH 358
M + V+ + C+ SIEL +VH
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 289
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/480 (45%), Positives = 326/480 (67%), Gaps = 1/480 (0%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
T++ D D +V T L+ LYA G + S K+F ++P V T M+T A+ G+V A
Sbjct: 134 TIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFA 193
Query: 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
R LF+ M E+D + WN MI GYAQ G + EAL +F M E V+ N V ++VLSAC Q+
Sbjct: 194 RKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQL 253
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
GAL+ GRW HSYIE ++ IK+ V++ T L+++Y+KCG ++ A VF + +K+V W+S
Sbjct: 254 GALDQGRWAHSYIERNK-IKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSA 312
Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240
+ G AM+GFG+ L+LF+ M + + P+ +TF+ +L C+ G V+EG+R F++M++E+
Sbjct: 313 LNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFG 372
Query: 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIA 300
IEP++EHYGC+V+L +RAG++E+A ++ M ++P + +W +LL A R++ N+ LG +
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLAS 432
Query: 301 EYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEF 360
+ ++ AN G YVLLSNIYA +WD V+ VR MK KGV+K+PGCS +E++ +VHEF
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEF 492
Query: 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
GD HPK +I + ++I+ L+ GY T V+ DI E++K+++L +HSEK A+AF
Sbjct: 493 FVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAF 552
Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
G++S + I+IVKNLRVC DCH V +ISK R+I++RDRNRFHHF +G CSC +W
Sbjct: 553 GIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 214/461 (46%), Positives = 306/461 (66%), Gaps = 1/461 (0%)
Query: 20 YARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMI 79
Y +G + A++LF MP R++ + TM+T YA+ G+++ A+ LFD M ++D V W MI
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 381
Query: 80 DGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
GY+Q G + EAL LF +M E N + + LS C + ALE G+ +H +
Sbjct: 382 AGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GY 440
Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
+ VG AL+ MY KCGS+++A +F + KD+V WN+MI GY+ HGFG+ AL+ F
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500
Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
M R LKP D T + +LSAC+H GLV++GR++F TM +Y + P +HY CMV+LL RAG
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560
Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
+E+A+ L+ +M EPD+ +WGTLLGA R+HGN L E A+ + + NSG YVLLSN
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 620
Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
+YA+ G W V ++R M++KGV+K PG S IE+ NK H F GD HP+ EI+ LEE
Sbjct: 621 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEE 680
Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
++ +K GYV +T +VLHD+ E++K+ + HSE+LAVA+G++ G I+++KNLRV
Sbjct: 681 LDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRV 740
Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
C DCH K +++ TGR I++RD NRFHHF +G+CSCGDYW
Sbjct: 741 CEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 139/305 (45%), Gaps = 44/305 (14%)
Query: 16 LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
++ Y R G+ A KLF MP+R LVS M+ Y + + AR LF+ M E+DV W
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160
Query: 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
N M+ GYAQ+G ++A +F RM E N+V+ A+LSA Q +E + EN
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSREN 216
Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
+ N +G + K + +AR FD +N +DVV WN++I GYA G +A Q
Sbjct: 217 WALVSWNCLLGG-----FVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 196 LFNEMCRIRLKPSD--ITFIGLLSACAHAGLVNEGRRFFNTM------------------ 235
LF+E P T+ ++S +V E R F+ M
Sbjct: 272 LFDE------SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG 325
Query: 236 ------KDEYAIEP--KVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
K+ + + P V + M+ ++ G++ EA K + D + D V W ++
Sbjct: 326 ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA-KNLFDKMPKRDPVSWAAMIAGY 384
Query: 288 RLHGN 292
G+
Sbjct: 385 SQSGH 389
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
+ D D+ WN I Y G +AL++F M R S +++ G++S G
Sbjct: 58 KCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFEL 113
Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
R+ F+ M + + V G + N G+ E ++++ E D W T+L
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRN--RNLGKARELFEIM----PERDVCSWNTMLSGY 167
Query: 288 RLHGNIALGEKIAEYLISQN 307
+G + + + + +N
Sbjct: 168 AQNGCVDDARSVFDRMPEKN 187
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 305/440 (69%), Gaps = 5/440 (1%)
Query: 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
L+SL TM YAK G+VA A++LFD M+ +++ WN MI GYA++G A EA+ +F M+
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316
Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
+ V P+ ++ + +SAC Q+G+LE R ++ Y+ S + + +V + +ALI+M++KCGS++
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS-DYRDDVFISSALIDMFAKCGSVE 375
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
ARLVFDR D+DVVVW++MIVGY +HG ++A+ L+ M R + P+D+TF+GLL AC
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435
Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
H+G+V EG FFN M D + I P+ +HY C+++LL RAG +++AY+++ M ++P +W
Sbjct: 436 HSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494
Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
G LL AC+ H ++ LGE A+ L S + +N+G YV LSN+YAA WD VA VR MKEK
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554
Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
G+ K+ GCS +E+ ++ F GD HP+ +EI +E I LK G+V LHD+
Sbjct: 555 GLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDL 614
Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
+++ + +L HSE++A+A+GLIST GT ++I KNLR C +CHA KLISK R+I++
Sbjct: 615 NDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVV 674
Query: 461 RDRNRFHHFVNGTCSCGDYW 480
RD NRFHHF +G CSCGDYW
Sbjct: 675 RDTNRFHHFKDGVCSCGDYW 694
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 130/244 (53%), Gaps = 7/244 (2%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
+T ++ + G++ AR +FDD+ + WN +I GY+++ +AL+++ M +V
Sbjct: 56 ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
P+ T +L AC + L+ GR++H+ + +V V LI +Y+KC L AR
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR-LGFDADVFVQNGLIALYAKCRRLGSAR 174
Query: 164 LVFD--RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
VF+ + ++ +V W +++ YA +G +AL++F++M ++ +KP + + +L+A
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234
Query: 222 AGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
+ +GR + +K IEP + + + ++ GQV A K++ D P+ +LW
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATA-KILFDKMKSPNLILW 291
Query: 281 GTLL 284
++
Sbjct: 292 NAMI 295
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/484 (44%), Positives = 322/484 (66%), Gaps = 14/484 (2%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAAR 61
++ D + L+ DV E + + + + SL ++L YA G+VA+A
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+FD M EKD+V WN +I+G+A++G EAL L+ M ++ ++P+ T V++LSAC +IG
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236
Query: 122 ALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
AL G+ +H Y+ IKV N+ L+++Y++CG +++A+ +FD + DK+ V W
Sbjct: 237 ALTLGKRVHVYM-----IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 291
Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
S+IVG A++GFGK+A++LF M L P +ITF+G+L AC+H G+V EG +F M+
Sbjct: 292 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 351
Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
+EY IEP++EH+GCMV+LL+RAGQV++AY+ + M ++P+ V+W TLLGAC +HG+ L
Sbjct: 352 EEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 411
Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
E ++ +SG YVLLSN+YA+ W V ++R M GV+K PG S +E+ N+
Sbjct: 412 EFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNR 471
Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
VHEFL GD HP+S IY L+E+ G L++EGYVPQ V D+ E++K+N++ HSEK+
Sbjct: 472 VHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKI 531
Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
A+AF LIST + I +VKNLRVC DCH KL+SK R+I++RDR+RFHHF NG+CSC
Sbjct: 532 AIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSC 591
Query: 477 GDYW 480
DYW
Sbjct: 592 QDYW 595
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 133/250 (53%), Gaps = 5/250 (2%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQHGLANEALVLFRRM-LAE 101
L L ++ A +F +E+ +V WN +I GYA+ G + A L+R M ++
Sbjct: 56 LIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSG 115
Query: 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161
VEP+ T ++ A + + G IHS + S + V +L+++Y+ CG +
Sbjct: 116 LVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS-GFGSLIYVQNSLLHLYANCGDVAS 174
Query: 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221
A VFD++ +KD+V WNS+I G+A +G ++AL L+ EM +KP T + LLSACA
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 234
Query: 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
G + G+R M + + + +++L +R G+VEEA K + D ++ +SV W
Sbjct: 235 IGALTLGKRVHVYMI-KVGLTRNLHSSNVLLDLYARCGRVEEA-KTLFDEMVDKNSVSWT 292
Query: 282 TLLGACRLHG 291
+L+ ++G
Sbjct: 293 SLIVGLAVNG 302
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K L ++L+ S L+DLYAR G V A+ LF
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF---------------------------- 280
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQI 120
D+M +K+ V W +I G A +G EA+ LF+ M + E + P E+T V +L AC
Sbjct: 281 ---DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 337
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNS 179
G ++ G + I+ ++ ++++ ++ G +K A + +VV+W +
Sbjct: 338 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 397
Query: 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
++ +H G L F + ++L+P+
Sbjct: 398 LLGACTVH--GDSDLAEFARIQILQLEPN 424
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 57/223 (25%)
Query: 162 ARLVFDRVNDK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR--LKPSDITFIGLLSA 218
A VF ++ +V +WN++I GYA G A L+ EM R+ ++P T+ L+ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREM-RVSGLVEPDTHTYPFLIKA 130
Query: 219 C-----------------------------------AHAGLVNEGRRFFNTMKDEYAIEP 243
A+ G V + F+ M ++ +
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA- 189
Query: 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIA 300
+ ++N + G+ EEA L +M I+PD +LL AC G + LG+++
Sbjct: 190 ----WNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVH 245
Query: 301 EYLI----SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
Y+I ++NL +S +L ++YA G V +TL E
Sbjct: 246 VYMIKVGLTRNLHSSN---VLLDLYARCGR---VEEAKTLFDE 282
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/480 (43%), Positives = 319/480 (66%), Gaps = 2/480 (0%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
V+F D+YV SLV +YA G + +A ++F M R +VS T+M+ Y K G V AR
Sbjct: 144 VRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAR 203
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+FD+M +++ W++MI+GYA++ +A+ LF M E V NE V+V+S+C +G
Sbjct: 204 EMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLG 263
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
ALE G + Y+ S ++ VN+ +GTAL++M+ +CG ++ A VF+ + + D + W+S+I
Sbjct: 264 ALEFGERAYEYVVKS-HMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSII 322
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
G A+HG A+ F++M + P D+TF +LSAC+H GLV +G + MK ++ I
Sbjct: 323 KGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGI 382
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
EP++EHYGC+V++L RAG++ EA ++ M ++P++ + G LLGAC+++ N + E++
Sbjct: 383 EPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGN 442
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
LI +SG YVLLSNIYA G WD + +R +MKEK V+K PG S IE+ K+++F
Sbjct: 443 MLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFT 502
Query: 362 AG-DLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAF 420
G D +HP+ +I EEI G ++ GY T D+ E++K++S+ +HSEKLA+A+
Sbjct: 503 MGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAY 562
Query: 421 GLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
G++ T+PGT+I+IVKNLRVC DCH V KLIS+ GR++++RDRNRFHHF NG CSC DYW
Sbjct: 563 GMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+F ++ + ++ V+N +I ++ A + +M + R+ P +ITF L+ A +
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
V G + + + + + V +V++ + G + A ++ M D V W +++
Sbjct: 133 VLVGEQTHSQIV-RFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMV 190
Query: 285 -GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
G C+ G + ++ + + +NL T+ ++ N YA ++ + MK +GV
Sbjct: 191 AGYCKC-GMVENAREMFDEMPHRNLF---TWSIMINGYAKNNCFEKAIDLFEFMKREGV 245
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/484 (44%), Positives = 305/484 (63%), Gaps = 5/484 (1%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
+K L KD V ++++D+Y + G V LF +T ++ G V A
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337
Query: 61 RVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116
+F+ +E+ +VV W +I G AQ+G EAL LFR M V+PN VT ++L A
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176
CG I AL GR H + + NV VG+ALI+MY+KCG + +++VF+ + K++V
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456
Query: 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236
WNS++ G++MHG K+ + +F + R RLKP I+F LLSAC GL +EG ++F M
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516
Query: 237 DEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296
+EY I+P++EHY CMVNLL RAG+++EAY L+ +M EPDS +WG LL +CRL N+ L
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLA 576
Query: 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356
E AE L N GTYVLLSNIYAA G W V +R M+ G++K PGCS I++ N+
Sbjct: 577 EIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNR 636
Query: 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKL 416
V+ LAGD HP+ +I ++EI+ ++ G+ P LHD+ E++++ L HSEKL
Sbjct: 637 VYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKL 696
Query: 417 AVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSC 476
AV FGL++T GT ++++KNLR+C DCHAV K IS + GR+I +RD NRFHHF +G CSC
Sbjct: 697 AVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSC 756
Query: 477 GDYW 480
GD+W
Sbjct: 757 GDFW 760
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 44/359 (12%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
LD D +V S+ +Y R G + A K+F M + +V+ + +L YA++G + +
Sbjct: 147 LDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILS 206
Query: 66 DME----EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+ME E ++V WN ++ G+ + G EA+V+F+++ P++VT +VL + G
Sbjct: 207 EMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSE 266
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG------------------------ 157
L GR IH Y+ +K + +A+I+MY K G
Sbjct: 267 MLNMGRLIHGYVIKQGLLKDKCVI-SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325
Query: 158 -----------SLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
+L+ L ++ + +VV W S+I G A +G +AL+LF EM +K
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVK 385
Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
P+ +T +L AC + + GR + ++ V ++++ ++ G++ + +
Sbjct: 386 PNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLD-NVHVGSALIDMYAKCGRINLS-Q 443
Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325
+V +M + V W +L+ +HG I E L+ L ++ +++ +A G
Sbjct: 444 IVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPD--FISFTSLLSACG 500
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/358 (19%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
++ Y+ A ++ + + + ++ +I + L +++ +F RM + + P+
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
+ C ++ A + G+ IH + + ++ V ++ +MY +CG + DAR VF
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHC-VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVF 174
Query: 167 DRVNDKDVVV-----------------------------------WNSMIVGYAMHGFGK 191
DR++DKDVV WN ++ G+ G+ K
Sbjct: 175 DRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHK 234
Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------NTMKDEYAIEPKV 245
+A+ +F ++ + P +T +L + + ++N GR +KD+ I +
Sbjct: 235 EAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMI 294
Query: 246 EHYG------------------------CMVNLLSRAGQVEEA---YKLVMDMKIEPDSV 278
+ YG + LSR G V++A ++L + +E + V
Sbjct: 295 DMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVV 354
Query: 279 LWGTLLGACRLHG-NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335
W +++ C +G +I E E ++ N +V + ++ A GN + R+
Sbjct: 355 SWTSIIAGCAQNGKDIEALELFREMQVAGVKPN---HVTIPSMLPACGNIAALGHGRS 409
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/438 (48%), Positives = 296/438 (67%), Gaps = 4/438 (0%)
Query: 46 TMLTCYAKQGE--VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
T+L YAK GE VA AR +FD + +KD V +N ++ YAQ G++NEA +FRR++ KV
Sbjct: 223 TLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKV 282
Query: 104 EP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
N +T VL A GAL G+ IH + ++ +V VGT++I+MY KCG ++ A
Sbjct: 283 VTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETA 341
Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
R FDR+ +K+V W +MI GY MHG AL+LF M ++P+ ITF+ +L+AC+HA
Sbjct: 342 RKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA 401
Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
GL EG R+FN MK + +EP +EHYGCMV+LL RAG +++AY L+ MK++PDS++W +
Sbjct: 402 GLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSS 461
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
LL ACR+H N+ L E L + +N G Y+LLS+IYA G W V RVR +MK +G+
Sbjct: 462 LLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGL 521
Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
K PG S +EL+ +VH FL GD HP+ ++IY L E+N L GYV T V HD+ E
Sbjct: 522 VKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDE 581
Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
++K+ +L VHSEKLA+AFG+++T PG+++ +VKNLRVC DCH V KLISK R+ ++RD
Sbjct: 582 EEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRD 641
Query: 463 RNRFHHFVNGTCSCGDYW 480
RFHHF +G CSCGDYW
Sbjct: 642 AKRFHHFKDGGCSCGDYW 659
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 160/319 (50%), Gaps = 17/319 (5%)
Query: 14 TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
+SL D+++ + ++ F Q + + ++ Y+ G++ AR +FD++ ++++V
Sbjct: 87 SSLFDIFSGKQ---THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIV 143
Query: 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT------AVAVLSACGQIGALESGR 127
W MI GY +G A +A+ LF+ +L ++ + ++ V+V+SAC ++ A
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE 203
Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGS--LKDARLVFDRVNDKDVVVWNSMIVGYA 185
IHS++ R V VG L++ Y+K G + AR +FD++ DKD V +NS++ YA
Sbjct: 204 SIHSFVIK-RGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYA 262
Query: 186 MHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
G +A ++F + + ++ + IT +L A +H+G + G+ + + +E
Sbjct: 263 QSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVI-RMGLEDD 321
Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
V ++++ + G+VE A K MK + W ++ +HG+ A ++ +I
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380
Query: 305 SQNLANSGTYVLLSNIYAA 323
+ Y+ ++ AA
Sbjct: 381 DSGV--RPNYITFVSVLAA 397
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 52/324 (16%)
Query: 67 MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
+++ DV WN +I A+ G + EAL+ F M + P + + AC + + SG
Sbjct: 36 VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 127 RWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
+ H +++ ++ ++ V +ALI MYS CG L+DAR VFD + +++V W SMI GY
Sbjct: 96 KQTHQQAFVFGYQS---DIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152
Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITF------IGLLSACAHA---GLVNEGRRFF--- 232
++G DA+ LF ++ D F + ++SAC+ GL F
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212
Query: 233 ---------NTMKDEYA-----------------IEPKVEHYGCMVNLLSRAGQVEEAY- 265
NT+ D YA ++ Y ++++ +++G EA+
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFE 272
Query: 266 ---KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSN 319
+LV + + +++ T+L A G + +G+ I + +I L + GT ++ +
Sbjct: 273 VFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII--D 330
Query: 320 IYAAIGNWDGVARVRTLMKEKGVQ 343
+Y G + + MK K V+
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVR 354
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T+++ Y K G V AR FD M+ K+V W MI GY HG A +AL LF M+ V
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385
Query: 105 PNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
PN +T V+VL+AC G +E RW ++ ++ ++ ++ ++++ + G L+ A
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNA-MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444
Query: 164 LVFDRVNDK-DVVVWNSMIVGYAMH 187
+ R+ K D ++W+S++ +H
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIH 469
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/468 (44%), Positives = 302/468 (64%), Gaps = 2/468 (0%)
Query: 14 TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
TS++ Y G + AE+ F MP + +++ M+ + + GE++ AR +FD ME++D
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297
Query: 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
W MI Y + G EAL LF +M + V P+ + +++LS C + +L+ GR +H+++
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
+ +V V + L+ MY KCG L A+LVFDR + KD+++WNS+I GYA HG G++A
Sbjct: 358 VRCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEA 416
Query: 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253
L++F+EM P+ +T I +L+AC++AG + EG F +M+ ++ + P VEHY C V+
Sbjct: 417 LKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476
Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
+L RAGQV++A +L+ M I+PD+ +WG LLGAC+ H + L E A+ L N+GT
Sbjct: 477 MLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGT 536
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSKE 372
YVLLS+I A+ W VA VR M+ V K PGCS IE+ KVH F G ++ HP+
Sbjct: 537 YVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAM 596
Query: 373 IYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
I MMLE+ +G L+ GY P VLHD+ E++K +SL HSE+LAVA+GL+ G I+
Sbjct: 597 ILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIR 656
Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
++KNLRVC DCHA KLISK T R+I++RD NRFHHF NG CSC DYW
Sbjct: 657 VMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 149/338 (44%), Gaps = 47/338 (13%)
Query: 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSL---------------------- 44
++++ T++V Y + G V AE LF MP+R+ VS
Sbjct: 107 ERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDM 166
Query: 45 ---------TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF 95
T M+ ++G V AR++FD+M E++VV W MI GY Q+ + A LF
Sbjct: 167 MPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLF 226
Query: 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155
M E EV+ ++L G +E + I N A+I + +
Sbjct: 227 EVM----PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACN-----AMIVGFGE 277
Query: 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
G + AR VFD + D+D W MI Y GF +AL LF +M + ++PS + I +
Sbjct: 278 VGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISI 337
Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
LS CA + GR+ + + V ++ + + G++ +A KLV D
Sbjct: 338 LSVCATLASLQYGRQVHAHLV-RCQFDDDVYVASVLMTMYVKCGELVKA-KLVFDRFSSK 395
Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
D ++W +++ HG LGE+ + I + +SGT
Sbjct: 396 DIIMWNSIISGYASHG---LGEEALK--IFHEMPSSGT 428
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 19/277 (6%)
Query: 15 SLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC 74
S+V Y G A +LF M +R++VS +++ Y K + AR +F+ M E++VV
Sbjct: 53 SIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVS 112
Query: 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
W M+ GY Q G+ EA LF RM E NEV+ + G ++ R ++ +
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRM----PERNEVSWTVMFGGLIDDGRIDKARKLYDMMP 168
Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
+V T +I + G + +ARL+FD + +++VV W +MI GY + A
Sbjct: 169 VK-----DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVAR 223
Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
+LF M + +++++ +L +G + + FF M ++P + +V
Sbjct: 224 KLFEVMP----EKTEVSWTSMLLGYTLSGRIEDAEEFFEVM----PMKPVIACNAMIVG- 274
Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
G++ +A + V D+ + D+ W ++ A G
Sbjct: 275 FGEVGEISKARR-VFDLMEDRDNATWRGMIKAYERKG 310
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 32/187 (17%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
V+ D D+YV++ L+ +Y + G+++ A+ +F
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCGELVKAKLVF---------------------------- 389
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
D KD++ WN +I GYA HGL EAL +F M + PN+VT +A+L+AC G
Sbjct: 390 ---DRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAG 446
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-DVVVWNSM 180
LE G I +E+ + V+ + ++M + G + A + + + K D VW ++
Sbjct: 447 KLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGAL 506
Query: 181 IVGYAMH 187
+ H
Sbjct: 507 LGACKTH 513
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209
I+ S+ G + +AR FD + K + WNS++ GY +G K+A QLF+EM +
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79
Query: 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269
+++ GL+S ++ E R F M E V + MV + G V EA L
Sbjct: 80 VSWNGLVSGYIKNRMIVEARNVFELMP-----ERNVVSWTAMVKGYMQEGMVGEAESLFW 134
Query: 270 DMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
M E + V W + G G I K+ + + +++ S +
Sbjct: 135 RMP-ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMI 179
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/469 (43%), Positives = 306/469 (65%), Gaps = 3/469 (0%)
Query: 14 TSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV 73
TS++ Y + G + AE+LF MP + +++ M++ ++GE+A AR +FD M+E++
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Query: 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYI 133
W +I + ++G EAL LF M + V P T +++LS C + +L G+ +H+ +
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 134 ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193
+ V+V V + L+ MY KCG L ++L+FDR KD+++WNS+I GYA HG G++A
Sbjct: 358 VRCQ-FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEA 416
Query: 194 LQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252
L++F EM KP+++TF+ LSAC++AG+V EG + + +M+ + ++P HY CMV
Sbjct: 417 LKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMV 476
Query: 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
++L RAG+ EA +++ M +EPD+ +WG+LLGACR H + + E A+ LI NSG
Sbjct: 477 DMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSG 536
Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR-HPKSK 371
TY+LLSN+YA+ G W VA +R LMK + V+K PGCS E+ NKVH F G + HP+ +
Sbjct: 537 TYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQE 596
Query: 372 EIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSI 431
I +L+E++G L+ GY P LHD+ E++K NSL+ HSE+LAVA+ L+ G I
Sbjct: 597 SILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPI 656
Query: 432 KIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
+++KNLRVC DCH K+ISK R+I++RD NRFHHF NG CSC DYW
Sbjct: 657 RVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 131/256 (51%), Gaps = 19/256 (7%)
Query: 29 AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
A KLF MP R+++S +++ Y K GE+ AR +FD M E++VV W ++ GY +G
Sbjct: 67 ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKV 126
Query: 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148
+ A LF +M E N+V+ +L Q G ++ ++ I + NI T+
Sbjct: 127 DVAESLFWKM----PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNI-----ARTS 177
Query: 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
+I+ K G + +AR +FD ++++ V+ W +M+ GY + DA ++F+ M + +
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKT 233
Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
++++ +L G + + F M ++P + M++ L + G++ +A ++
Sbjct: 234 EVSWTSMLMGYVQNGRIEDAEELFEVM----PVKPVIA-CNAMISGLGQKGEIAKARRVF 288
Query: 269 MDMKIEPDSVLWGTLL 284
MK E + W T++
Sbjct: 289 DSMK-ERNDASWQTVI 303
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 145/301 (48%), Gaps = 21/301 (6%)
Query: 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
D+++ LV Y + G++ A K+F MP+R++VS T ++ Y G+V A LF
Sbjct: 76 DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWK 135
Query: 67 MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
M EK+ V W VM+ G+ Q G ++A L+ M+ +K + + +++ + G ++
Sbjct: 136 MPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK---DNIARTSMIHGLCKEGRVDEA 191
Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
R I + +V T ++ Y + + DAR +FD + +K V W SM++GY
Sbjct: 192 REIFDEMSER-----SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQ 246
Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
+G +DA +LF M +KP I ++S G + + RR F++MK E
Sbjct: 247 NGRIEDAEELFEVM---PVKPV-IACNAMISGLGQKGEIAKARRVFDSMK-----ERNDA 297
Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
+ ++ + R G EA L + M+ + P ++L C ++ G+++ L
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 304 I 304
+
Sbjct: 358 V 358
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 28/312 (8%)
Query: 48 LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107
+T ++ G++ AR LFD + K + WN M+ GY + + +A R++ E + N
Sbjct: 24 ITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDA----RKLFDEMPDRNI 79
Query: 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167
++ ++S + G ++ R + + NV TAL+ Y G + A +F
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVFDLMPER-----NVVSWTALVKGYVHNGKVDVAESLFW 134
Query: 168 RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE 227
++ +K+ V W M++G+ G DA +L+ EM + +I ++ G V+E
Sbjct: 135 KMPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPDK---DNIARTSMIHGLCKEGRVDE 190
Query: 228 GRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGAC 287
R F+ M + I + MV + +V++A K + D+ E V W ++L
Sbjct: 191 AREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARK-IFDVMPEKTEVSWTSMLMGY 244
Query: 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347
+G I E++ E + + + + + + + +G +A+ R + KE
Sbjct: 245 VQNGRIEDAEELFEVMPVKPV------IACNAMISGLGQKGEIAKARRVFDS---MKERN 295
Query: 348 CSSIELSNKVHE 359
+S + K+HE
Sbjct: 296 DASWQTVIKIHE 307
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/436 (46%), Positives = 299/436 (68%), Gaps = 2/436 (0%)
Query: 46 TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
T++ Y + +V +AR +FD + E VVC+N MI GYA+ NEAL LFR M + ++P
Sbjct: 169 TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228
Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
NE+T ++VLS+C +G+L+ G+WIH Y + K V+V TALI+M++KCGSL DA +
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSI 287
Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
F+++ KD W++MIV YA HG + ++ +F M ++P +ITF+GLL+AC+H G V
Sbjct: 288 FEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRV 347
Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
EGR++F+ M ++ I P ++HYG MV+LLSRAG +E+AY+ + + I P +LW LL
Sbjct: 348 EEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLA 407
Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
AC H N+ L EK++E + + ++ G YV+LSN+YA W+ V +R +MK++ K
Sbjct: 408 ACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKV 467
Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH-DIGEKQ 404
PGCSSIE++N VHEF +GD + +++ L+E+ LK GYVP T +V+H ++ +++
Sbjct: 468 PGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQE 527
Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
K+ +L HSEKLA+ FGL++T PGT+I++VKNLRVC DCH KLIS GRK+++RD
Sbjct: 528 KEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQ 587
Query: 465 RFHHFVNGTCSCGDYW 480
RFHHF +G CSCGD+W
Sbjct: 588 RFHHFEDGKCSCGDFW 603
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 3/268 (1%)
Query: 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
+ L T + ++ AR LF+ M E D+V +N M GY++ E LF +L
Sbjct: 63 VAKLINFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE 122
Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
+ + P+ T ++L AC ALE GR +H + + NV V LINMY++C +
Sbjct: 123 DGILPDNYTFPSLLKACAVAKALEEGRQLHC-LSMKLGLDDNVYVCPTLINMYTECEDVD 181
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
AR VFDR+ + VV +N+MI GYA +AL LF EM LKP++IT + +LS+CA
Sbjct: 182 SARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCA 241
Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
G ++ G ++ + +++ V+ ++++ ++ G +++A + M+ + D+ W
Sbjct: 242 LLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAW 299
Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNL 308
++ A HG + E + S+N+
Sbjct: 300 SAMIVAYANHGKAEKSMLMFERMRSENV 327
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T ++ +AK G + A +F+ M KD W+ MI YA HG A +++++F RM +E V+
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
P+E+T + +L+AC G +E GR S + + I +++ +++++ S+ G+L+DA
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYE 388
Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHG 188
D++ ++W ++ + H
Sbjct: 389 FIDKLPISPTPMLWRILLAACSSHN 413
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/479 (41%), Positives = 304/479 (63%), Gaps = 32/479 (6%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
++ +D D+Y+ +SLVD+YA+ + +E++F+ L C
Sbjct: 269 IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSR------------LYC----------- 305
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+D + WN ++ GY Q+G NEAL LFR+M+ KV+P V +V+ AC +
Sbjct: 306 --------RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA 357
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
L G+ +H Y+ N+ + +AL++MYSKCG++K AR +FDR+N D V W ++I
Sbjct: 358 TLHLGKQLHGYVLRG-GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI 241
+G+A+HG G +A+ LF EM R +KP+ + F+ +L+AC+H GLV+E +FN+M Y +
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 476
Query: 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301
++EHY + +LL RAG++EEAY + M +EP +W TLL +C +H N+ L EK+AE
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAE 536
Query: 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFL 361
+ + + N G YVL+ N+YA+ G W +A++R M++KG++K+P CS IE+ NK H F+
Sbjct: 537 KIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFV 596
Query: 362 AGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFG 421
+GD HP +I L+ + ++ EGYV T VLHD+ E+ K+ L HSE+LAVAFG
Sbjct: 597 SGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFG 656
Query: 422 LISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
+I+T+PGT+I++ KN+R+C DCH K ISK T R+I++RD +RFHHF G CSCGDYW
Sbjct: 657 IINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 160/298 (53%), Gaps = 12/298 (4%)
Query: 2 VKFSLDKDLYVSTSLVDLYAR---GGDVLSAEKLFATMPQRSLVSLTTML---TCYAKQG 55
V+ +D DLY +L+++YA+ G +S +F MPQR+ S + TC G
Sbjct: 132 VRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG 191
Query: 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115
+ + R +F+ M KDVV +N +I GYAQ G+ +AL + R M ++P+ T +VL
Sbjct: 192 -IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP 250
Query: 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV 175
+ + G+ IH Y+ + I +V +G++L++MY+K ++D+ VF R+ +D +
Sbjct: 251 IFSEYVDVIKGKEIHGYVIR-KGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309
Query: 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-T 234
WNS++ GY +G +AL+LF +M ++KP + F ++ ACAH ++ G++
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369
Query: 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292
++ + + +V++ S+ G ++ A K+ M + D V W ++ LHG+
Sbjct: 370 LRGGFGSNIFIA--SALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALHGH 424
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 157/389 (40%), Gaps = 74/389 (19%)
Query: 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
S S + +++ Y + A +LF ++ V+ W +I + L ++AL F M
Sbjct: 38 SHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMR 97
Query: 100 AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK---- 155
A P+ +VL +C + L G +H +I + ++ G AL+NMY+K
Sbjct: 98 ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVR-LGMDCDLYTGNALMNMYAKLLGM 156
Query: 156 -----CGSLKD---------------------------ARLVFDRVNDKDVVVWNSMIVG 183
G++ D R VF+ + KDVV +N++I G
Sbjct: 157 GSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAG 216
Query: 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF----------- 232
YA G +DAL++ EM LKP T +L + V +G+
Sbjct: 217 YAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSD 276
Query: 233 ----NTMKDEYAIEPKVE---------------HYGCMVNLLSRAGQVEEAYKLVMDM-- 271
+++ D YA ++E + +V + G+ EA +L M
Sbjct: 277 VYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVT 336
Query: 272 -KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDG 329
K++P +V + +++ AC + LG+++ Y++ +N L ++Y+ GN
Sbjct: 337 AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGN--- 393
Query: 330 VARVRTLMKEKGVQKEPGCSSIELSNKVH 358
+ R + V E ++I + + +H
Sbjct: 394 IKAARKIFDRMNVLDEVSWTAIIMGHALH 422
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/483 (44%), Positives = 304/483 (62%), Gaps = 5/483 (1%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEV 57
V+ + D Y ++ GD+ S E + M Q++ TT++ YAK G++
Sbjct: 204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKM 263
Query: 58 AAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117
AR +FD M EKD+V W+ MI GYA + E + LF +ML E ++P++ + V LS+C
Sbjct: 264 EKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSC 323
Query: 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVW 177
+GAL+ G W S I+ + N+ + ALI+MY+KCG++ VF + +KD+V+
Sbjct: 324 ASLGALDLGEWGISLIDRHEFL-TNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382
Query: 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237
N+ I G A +G K + +F + ++ + P TF+GLL C HAGL+ +G RFFN +
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442
Query: 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGE 297
YA++ VEHYGCMV+L RAG +++AY+L+ DM + P++++WG LL CRL + L E
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502
Query: 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKV 357
+ + LI+ N+G YV LSNIY+ G WD A VR +M +KG++K PG S IEL KV
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562
Query: 358 HEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLA 417
HEFLA D HP S +IY LE++ ++ G+VP T+ V D+ E++K+ L HSEKLA
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLA 622
Query: 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCG 477
VA GLIST G I++VKNLRVC DCH V KLISK T R+I++RD NRFH F NG+CSC
Sbjct: 623 VALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCN 682
Query: 478 DYW 480
DYW
Sbjct: 683 DYW 685
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 148/255 (58%), Gaps = 3/255 (1%)
Query: 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
+ ++T++L+ Y+ G + A LFD++ ++ VV W + GY G EA+ LF++M+
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVE 205
Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
V+P+ V VLSAC +G L+SG WI Y+E ++ N V T L+N+Y+KCG ++
Sbjct: 206 MGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVRTTLVNLYAKCGKME 264
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
AR VFD + +KD+V W++MI GYA + F K+ ++LF +M + LKP + +G LS+CA
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324
Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
G ++ G + ++ D + + ++++ ++ G + +++ +MK E D V+
Sbjct: 325 SLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIM 382
Query: 281 GTLLGACRLHGNIAL 295
+ +G++ L
Sbjct: 383 NAAISGLAKNGHVKL 397
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 125/244 (51%), Gaps = 5/244 (2%)
Query: 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
LV+L T + +Q + + +LF + ++ +N +I+G+ + L +E L LF +
Sbjct: 47 LVNLLLKRTLFFRQTKYS--YLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRK 104
Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
+ + T VL AC + + + G +HS + +V T+L+++YS G L
Sbjct: 105 HGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKC-GFNHDVAAMTSLLSIYSGSGRLN 163
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
DA +FD + D+ VV W ++ GY G ++A+ LF +M + +KP + +LSAC
Sbjct: 164 DAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACV 223
Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
H G ++ G M +E ++ +VNL ++ G++E+A + V D +E D V W
Sbjct: 224 HVGDLDSGEWIVKYM-EEMEMQKNSFVRTTLVNLYAKCGKMEKA-RSVFDSMVEKDIVTW 281
Query: 281 GTLL 284
T++
Sbjct: 282 STMI 285
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/478 (43%), Positives = 305/478 (63%), Gaps = 7/478 (1%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
D ++ T+LV +YA G + A + F M R+L T M++ Y+K G + A+V+FD E
Sbjct: 246 DTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTE 305
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
+KD+VCW MI Y + EAL +F M ++P+ V+ +V+SAC +G L+ +W
Sbjct: 306 KKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKW 365
Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
+HS I + ++ + + ALINMY+KCG L R VF+++ ++VV W+SMI +MHG
Sbjct: 366 VHSCI-HVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHG 424
Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
DAL LF M + ++P+++TF+G+L C+H+GLV EG++ F +M DEY I PK+EHY
Sbjct: 425 EASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHY 484
Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
GCMV+L RA + EA +++ M + + V+WG+L+ ACR+HG + LG+ A+ ++
Sbjct: 485 GCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEP 544
Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
+ G VL+SNIYA W+ V +R +M+EK V KE G S I+ + K HEFL GD RH
Sbjct: 545 DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHK 604
Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
+S EIY L+E+ LK GYVP VL D+ E++K++ + HSEKLA+ FGL++ +
Sbjct: 605 QSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKE 664
Query: 429 TS------IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
I+IVKNLRVC DCH FKL+SK R+I++RDR RFH + NG CSC DYW
Sbjct: 665 EEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 164/377 (43%), Gaps = 99/377 (26%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
D +V T +D+YA G + A +F M R +V+ TM+ Y + G V A LF++M+
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
+ +V+ P+E+ ++SACG+ G + R
Sbjct: 205 DSNVM-------------------------------PDEMILCNIVSACGRTGNMRYNRA 233
Query: 129 IHSY-IENS----------------------------RNIKV-NVQVGTALINMYSKCGS 158
I+ + IEN R + V N+ V TA+++ YSKCG
Sbjct: 234 IYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGR 293
Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
L DA+++FD+ KD+V W +MI Y + ++AL++F EMC +KP ++ ++SA
Sbjct: 294 LDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISA 353
Query: 219 CAHAGLVNEGRRF----------------------------FNTMKDEYAIEPK--VEHY 248
CA+ G++++ + + +D + P+ V +
Sbjct: 354 CANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSW 413
Query: 249 GCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKI-----A 300
M+N LS G+ +A L MK +EP+ V + +L C G + G+KI
Sbjct: 414 SSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTD 473
Query: 301 EYLISQNLANSGTYVLL 317
EY I+ L + G V L
Sbjct: 474 EYNITPKLEHYGCMVDL 490
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
L+ +L ++ +L+++YA+ G + + +F MP+R++VS ++M+ + GE
Sbjct: 375 LESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE--------- 425
Query: 66 DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
A++AL LF RM E VEPNEVT V VL C G +E
Sbjct: 426 ----------------------ASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEE 463
Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGY 184
G+ I + + + NI ++ +++++ + L++A V + + +VV+W S++
Sbjct: 464 GKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC 523
Query: 185 AMHG 188
+HG
Sbjct: 524 RIHG 527
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 32/244 (13%)
Query: 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132
+ +N + ++ ++ ++R+ ++ + + +L A ++ AL G +H
Sbjct: 77 IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136
Query: 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192
+ + V T ++MY+ CG + AR VFD ++ +DVV WN+MI Y G +
Sbjct: 137 AFKIATL-CDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDE 195
Query: 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF------NTMKDEYAIEPKVE 246
A +LF EM + P ++ ++SAC G + R + + D + + V
Sbjct: 196 AFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVT 255
Query: 247 HY---GC---------------------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
Y GC MV+ S+ G++++A +++ D + D V W T
Sbjct: 256 MYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDA-QVIFDQTEKKDLVCWTT 314
Query: 283 LLGA 286
++ A
Sbjct: 315 MISA 318
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK- 272
G + A G +N R F+ M V + M+ R G V+EA+KL +MK
Sbjct: 151 GFMDMYASCGRINYARNVFDEMSHR-----DVVTWNTMIERYCRFGLVDEAFKLFEEMKD 205
Query: 273 --IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWD 328
+ PD ++ ++ AC GN+ I E+LI +N T++L L +YA G D
Sbjct: 206 SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI-ENDVRMDTHLLTALVTMYAGAGCMD 264
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/461 (44%), Positives = 307/461 (66%), Gaps = 7/461 (1%)
Query: 26 VLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
++ +++ A + +R S +TT++ YA+ G V A +F M ++VV W+ MI
Sbjct: 198 LMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257
Query: 82 YAQHGLANEALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI 139
YA++G A EAL FR M+ E + PN VT V+VL AC + ALE G+ IH YI R +
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILR-RGL 316
Query: 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE 199
+ V +AL+ MY +CG L+ + VFDR++D+DVV WNS+I Y +HG+GK A+Q+F E
Sbjct: 317 DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE 376
Query: 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259
M P+ +TF+ +L AC+H GLV EG+R F TM ++ I+P++EHY CMV+LL RA
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRAN 436
Query: 260 QVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319
+++EA K+V DM+ EP +WG+LLG+CR+HGN+ L E+ + L + N+G YVLL++
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496
Query: 320 IYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEE 379
IYA WD V RV+ L++ +G+QK PG +E+ K++ F++ D +P ++I+ L +
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVK 556
Query: 380 INGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
+ +K +GY+PQT+ VL+++ ++K+ + HSEKLA+AFGLI+T G I+I KNLR+
Sbjct: 557 LAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRL 616
Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
C DCH K ISKF ++I++RD NRFH F NG CSCGDYW
Sbjct: 617 CEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 149/315 (47%), Gaps = 23/315 (7%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T ++ Y+ G V AR +FD ++ + WN + G E L L+ +M VE
Sbjct: 116 TKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVE 175
Query: 105 PNEVTAVAVLSAC----GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
+ T VL AC + L G+ IH+++ R +V + T L++MY++ G +
Sbjct: 176 SDRFTYTYVLKACVASECTVNHLMKGKEIHAHL-TRRGYSSHVYIMTTLVDMYARFGCVD 234
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSA 218
A VF + ++VV W++MI YA +G +AL+ F EM R P+ +T + +L A
Sbjct: 235 YASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQA 294
Query: 219 CAHAGLVNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
CA + +G+ + + +I P + +V + R G++E + V D + D
Sbjct: 295 CASLAALEQGKLIHGYILRRGLDSILPVI---SALVTMYGRCGKLEVGQR-VFDRMHDRD 350
Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYAAIGN----WDGV 330
V W +L+ + +HG G+K + + + LAN S T V ++ A + +G
Sbjct: 351 VVSWNSLISSYGVHG---YGKKAIQ-IFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK 406
Query: 331 ARVRTLMKEKGVQKE 345
T+ ++ G++ +
Sbjct: 407 RLFETMWRDHGIKPQ 421
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 132/307 (42%), Gaps = 45/307 (14%)
Query: 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
N +I + G +A+ R+L+++ P++ T ++ CG +L +H +I +
Sbjct: 50 NQLIQSLCKEGKLKQAI----RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105
Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
+ + + + + T LI MYS GS+ AR VFD+ + + VWN++ + G G++ L
Sbjct: 106 NGSDQ-DPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLG 164
Query: 196 LFNEMCRIRLKPSDITFIGLLSACA---------------HAGLVNEGRR----FFNTMK 236
L+ +M RI ++ T+ +L AC HA L G T+
Sbjct: 165 LYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLV 224
Query: 237 DEYAIEPKVEH---------------YGCMVNLLSRAGQVEEAYKLVMDMKIE-----PD 276
D YA V++ + M+ ++ G+ EA + +M E P+
Sbjct: 225 DMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPN 284
Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRT 335
SV ++L AC + G+ I Y++ + L + + L +Y G + RV
Sbjct: 285 SVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFD 344
Query: 336 LMKEKGV 342
M ++ V
Sbjct: 345 RMHDRDV 351
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/476 (45%), Positives = 294/476 (61%), Gaps = 2/476 (0%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
++K+ +++ Y GD+ A F P R +V+ T M+T Y K +V A +F
Sbjct: 182 MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFK 241
Query: 66 DME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124
DM K++V WN MI GY ++ + L LFR ML E + PN + L C ++ AL+
Sbjct: 242 DMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQ 301
Query: 125 SGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184
GR IH + S + +V T+LI+MY KCG L DA +F+ + KDVV WN+MI GY
Sbjct: 302 LGRQIHQIVSKS-TLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGY 360
Query: 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244
A HG AL LF EM +++P ITF+ +L AC HAGLVN G +F +M +Y +EP+
Sbjct: 361 AQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQ 420
Query: 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304
+HY CMV+LL RAG++EEA KL+ M P + ++GTLLGACR+H N+ L E AE L+
Sbjct: 421 PDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLL 480
Query: 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGD 364
N N+ YV L+NIYA+ W+ VARVR MKE V K PG S IE+ NKVH F + D
Sbjct: 481 QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSD 540
Query: 365 LRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIS 424
HP+ I+ L+E+ +K GY P+ + LH++ E+QK+ L HSEKLAVAFG I
Sbjct: 541 RIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIK 600
Query: 425 TQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
G+ I++ KNLR+C DCH K IS+ R+I++RD RFHHF +G+CSCGDYW
Sbjct: 601 LPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 16/335 (4%)
Query: 16 LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
L+ + ++ A +LF +P+ S ML+CY + A+ FD M KD W
Sbjct: 99 LIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASW 158
Query: 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
N MI GYA+ G +A LF M+ E NEV+ A++S + G LE S+
Sbjct: 159 NTMITGYARRGEMEKARELFYSMM----EKNEVSWNAMISGYIECGDLEKA----SHFFK 210
Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVF-DRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
++ V TA+I Y K ++ A +F D +K++V WN+MI GY + +D L
Sbjct: 211 VAPVR-GVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGL 269
Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254
+LF M ++P+ L C+ + GR+ + + + V ++++
Sbjct: 270 KLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIV-SKSTLCNDVTALTSLISM 328
Query: 255 LSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---S 311
+ G++ +A+KL MK + D V W ++ HGN + +I + +
Sbjct: 329 YCKCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWIT 387
Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346
VLL+ +A + N G+A +++++ V+ +P
Sbjct: 388 FVAVLLACNHAGLVN-IGMAYFESMVRDYKVEPQP 421
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 37/163 (22%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
K +L D+ TSL+ +Y + G++ A KLF M ++ +V+ M++ YA
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYA---------- 361
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
QHG A++AL LFR M+ K+ P+ +T VAVL AC G
Sbjct: 362 ---------------------QHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400
Query: 123 LESGRWIHSYIENS-RNIKVNVQVG--TALINMYSKCGSLKDA 162
+ G +Y E+ R+ KV Q T ++++ + G L++A
Sbjct: 401 VNIGM---AYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFI 213
+ G + A VF + K+ + WNS+++G + +A QLF+E+ +P ++
Sbjct: 73 RSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI----PEPDTFSYN 128
Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
+LS + + FF+ M + A + M+ +R G++E+A +L M +
Sbjct: 129 IMLSCYVRNVNFEKAQSFFDRMPFKDAAS-----WNTMITGYARRGEMEKARELFYSM-M 182
Query: 274 EPDSVLWGTLLG 285
E + V W ++
Sbjct: 183 EKNEVSWNAMIS 194
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/468 (42%), Positives = 304/468 (64%), Gaps = 10/468 (2%)
Query: 22 RGGDVLSAEKLFATMPQRSLVS----LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
+ GD+L ++ + +S +TT++ Y+ A +FD++ ++D V WNV
Sbjct: 125 KSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNV 184
Query: 78 MIDGYAQHGLANEALVLFRRMLAEK---VEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
+ Y ++ + LVLF +M + V+P+ VT + L AC +GAL+ G+ +H +I+
Sbjct: 185 LFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFID 244
Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
+ + + + L++MYS+CGS+ A VF + +++VV W ++I G AM+GFGK+A+
Sbjct: 245 EN-GLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAI 303
Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD-EYAIEPKVEHYGCMVN 253
+ FNEM + + P + T GLLSAC+H+GLV EG FF+ M+ E+ I+P + HYGC+V+
Sbjct: 304 EAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVD 363
Query: 254 LLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313
LL RA +++AY L+ M+++PDS +W TLLGACR+HG++ LGE++ +LI +G
Sbjct: 364 LLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGD 423
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEI 373
YVLL N Y+ +G W+ V +R+LMKEK + +PGCS+IEL VHEF+ D+ HP+ +EI
Sbjct: 424 YVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEI 483
Query: 374 YMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIK 432
Y ML EIN LK GYV + LH++ E++K +L HSEKLA+AFG++ T PGT+I+
Sbjct: 484 YKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIR 543
Query: 433 IVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
+ KNLR C DCH K +S R +++RDR+RFHHF G+CSC D+W
Sbjct: 544 VTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/439 (46%), Positives = 298/439 (67%), Gaps = 5/439 (1%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T ++ Y K GE+++A LF+ M+ KD+V WN + Q G + AL F +M A+ V+
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQ 207
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
+ T V++LSACGQ+G+LE G I+ I N+ V A ++M+ KCG+ + AR+
Sbjct: 208 FDSFTVVSMLSACGQLGSLEIGEEIYDRARK-EEIDCNIIVENARLDMHLKCGNTEAARV 266
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+F+ + ++VV W++MIVGYAM+G ++AL LF M L+P+ +TF+G+LSAC+HAGL
Sbjct: 267 LFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGL 326
Query: 225 VNEGRRFFNTM--KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
VNEG+R+F+ M ++ +EP+ EHY CMV+LL R+G +EEAY+ + M +EPD+ +WG
Sbjct: 327 VNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGA 386
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTY-VLLSNIYAAIGNWDGVARVRTLMKEKG 341
LLGAC +H ++ LG+K+A+ L+ + + G+Y VLLSNIYAA G WD V +VR+ M++ G
Sbjct: 387 LLGACAVHRDMILGQKVADVLV-ETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445
Query: 342 VQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIG 401
+K SS+E K+H F GD HP+SK IY L+EI ++ GYVP T V HD+
Sbjct: 446 TKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVE 505
Query: 402 EKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMR 461
++K+ SL HSEKLA+AFGLI +PG I+++KNLR C DCHA K +S T +I+MR
Sbjct: 506 MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMR 565
Query: 462 DRNRFHHFVNGTCSCGDYW 480
D+NRFHHF NG CSC ++W
Sbjct: 566 DKNRFHHFRNGVCSCKEFW 584
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 134/280 (47%), Gaps = 5/280 (1%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
LT +L G++ AR +FD+M + + WN + GY ++ L E+L+L+++M V
Sbjct: 46 LTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGV 105
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
P+E T V+ A Q+G G +H+++ + + V T L+ MY K G L A
Sbjct: 106 RPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI-VATELVMMYMKFGELSSAE 164
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
+F+ + KD+V WN+ + G AL+ FN+MC ++ T + +LSAC G
Sbjct: 165 FLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLG 224
Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
+ G ++ + E I+ + +++ + G E A L +MK + + V W T+
Sbjct: 225 SLEIGEEIYDRARKE-EIDCNIIVENARLDMHLKCGNTEAARVLFEEMK-QRNVVSWSTM 282
Query: 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323
+ ++G+ E + + QN YV + +A
Sbjct: 283 IVGYAMNGDSR--EALTLFTTMQNEGLRPNYVTFLGVLSA 320
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 34/188 (18%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARV 62
K +D ++ V + +D++ + G+ +A LF M QR++VS +TM+ YA G+
Sbjct: 238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGD------ 291
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
+ EAL LF M E + PN VT + VLSAC G
Sbjct: 292 -------------------------SREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGL 326
Query: 123 LESGRWIHSYI--ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNS 179
+ G+ S + N +N++ + ++++ + G L++A ++ + D +W +
Sbjct: 327 VNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGA 386
Query: 180 MIVGYAMH 187
++ A+H
Sbjct: 387 LLGACAVH 394
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/442 (44%), Positives = 292/442 (66%), Gaps = 2/442 (0%)
Query: 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
R++ + ++++ Y K EV A +F ++ + +V WN MI G+AQ+G +AL F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429
Query: 99 LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
+ V+P+ T V+V++A ++ +WIH + S + NV V TAL++MY+KCG+
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGA 488
Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
+ ARL+FD ++++ V WN+MI GY HGFGK AL+LF EM + +KP+ +TF+ ++SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548
Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
C+H+GLV G + F MK+ Y+IE ++HYG MV+LL RAG++ EA+ +M M ++P
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608
Query: 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338
++G +LGAC++H N+ EK AE L N + G +VLL+NIY A W+ V +VR M
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668
Query: 339 EKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398
+G++K PGCS +E+ N+VH F +G HP SK+IY LE++ +K GYVP T +VL
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL- 727
Query: 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKI 458
+ K+ L HSEKLA++FGL++T GT+I + KNLRVC DCH K IS TGR+I
Sbjct: 728 GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREI 787
Query: 459 MMRDRNRFHHFVNGTCSCGDYW 480
++RD RFHHF NG CSCGDYW
Sbjct: 788 VVRDMQRFHHFKNGACSCGDYW 809
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 142/253 (56%), Gaps = 4/253 (1%)
Query: 40 SLVSLTTMLT-CYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
SLV+++T L YAK G + AR LFD M E++VV WN MID Y Q+ EA+++F++M
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM 328
Query: 99 LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
L E V+P +V+ + L AC +G LE GR+IH + + NV V +LI+MY KC
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHK-LSVELGLDRNVSVVNSLISMYCKCKE 387
Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
+ A +F ++ + +V WN+MI+G+A +G DAL F++M +KP T++ +++A
Sbjct: 388 VDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447
Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
A + + ++ + + ++ V +V++ ++ G + A +L+ DM E
Sbjct: 448 IAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVT 505
Query: 279 LWGTLLGACRLHG 291
W ++ HG
Sbjct: 506 TWNAMIDGYGTHG 518
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)
Query: 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100
L ++T + YAK +V AR +FD M E+D+V WN ++ GY+Q+G+A AL + + M
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229
Query: 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160
E ++P+ +T V+VL A + + G+ IH Y S V + TAL++MY+KCGSL+
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS-GFDSLVNISTALVDMYAKCGSLE 288
Query: 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220
AR +FD + +++VV WNSMI Y + K+A+ +F +M +KP+D++ +G L ACA
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
G + G RF + + E ++ V ++++ + +V+ A
Sbjct: 349 DLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 131/243 (53%), Gaps = 5/243 (2%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T +++ + + G V A +F+ ++ K V ++ M+ G+A+ ++AL F RM + VE
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
P +L CG L G+ IH + S +++ T L NMY+KC + +AR
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS-GFSLDLFAMTGLENMYAKCRQVNEARK 191
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
VFDR+ ++D+V WN+++ GY+ +G + AL++ MC LKPS IT + +L A + L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRL 251
Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
++ G+ M+ + + V +V++ ++ G +E A +L D +E + V W ++
Sbjct: 252 ISVGKEIHGYAMRSGF--DSLVNISTALVDMYAKCGSLETARQL-FDGMLERNVVSWNSM 308
Query: 284 LGA 286
+ A
Sbjct: 309 IDA 311
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 31/157 (19%)
Query: 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFD 65
LDK+++V+T+LVD+YA+ G ++ A +F M +R + + M+ Y G AA LF+
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE 528
Query: 66 DMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES 125
+M++ ++PN VT ++V+SAC G +E+
Sbjct: 529 EMQKG-------------------------------TIKPNGVTFLSVISACSHSGLVEA 557
Query: 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
G ++ + +I++++ A++++ + G L +A
Sbjct: 558 GLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
T L++++ + GS+ +A VF+ ++ K V++++M+ G+A ALQ F M ++
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265
P F LL C + G+ + K ++++ + + N+ ++ QV EA
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD--LFAMTGLENMYAKCRQVNEAR 190
Query: 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
K V D E D V W T++ +G + ++ + + +NL S ++ + ++ A+
Sbjct: 191 K-VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPS--FITIVSVLPAV 246
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/441 (44%), Positives = 281/441 (63%), Gaps = 4/441 (0%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDM--EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101
+ ++ YAK +V AR +FD + +E+DVV W VMI GY+QHG AN+AL L M E
Sbjct: 410 INQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469
Query: 102 --KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159
+ PN T L AC + AL G+ IH+Y ++ V + V LI+MY+KCGS+
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Query: 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219
DARLVFD + K+ V W S++ GY MHG+G++AL +F+EM RI K +T + +L AC
Sbjct: 530 SDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYAC 589
Query: 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
+H+G++++G +FN MK + + P EHY C+V+LL RAG++ A +L+ +M +EP V+
Sbjct: 590 SHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVV 649
Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339
W L CR+HG + LGE AE + + G+Y LLSN+YA G W V R+R+LM+
Sbjct: 650 WVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRH 709
Query: 340 KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHD 399
KGV+K PGCS +E F GD HP +KEIY +L + +K GYVP+T LHD
Sbjct: 710 KGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHD 769
Query: 400 IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIM 459
+ +++K + L HSEKLA+A+G+++T G +I+I KNLRVC DCH F +S+ I+
Sbjct: 770 VDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDII 829
Query: 460 MRDRNRFHHFVNGTCSCGDYW 480
+RD +RFHHF NG+CSC YW
Sbjct: 830 LRDSSRFHHFKNGSCSCKGYW 850
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 23/302 (7%)
Query: 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
++++V LVD+YA+ G + A +F+ M + +VS M+ Y++ G A LF+ M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 68 EEK----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123
+E+ DVV W+ I GYAQ GL EAL + R+ML+ ++PNEVT ++VLS C +GAL
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 124 ESGRWIHSY-IENSRNIKVNVQ-----VGTALINMYSKCGSLKDARLVFDRVNDK--DVV 175
G+ IH Y I+ +++ N V LI+MY+KC + AR +FD ++ K DVV
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 176 VWNSMIVGYAMHGFGKDALQLFNEM----CRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
W MI GY+ HG AL+L +EM C+ R P+ T L ACA + G++
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTR--PNAFTISCALVACASLAALRIGKQI 499
Query: 232 --FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
+ + A+ V + C++++ ++ G + +A +LV D + + V W +L+ +
Sbjct: 500 HAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDA-RLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 290 HG 291
HG
Sbjct: 557 HG 558
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 46/290 (15%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEP 105
++ Y++ ++ AR +FD+M DVV WN +I+ YA+ G AL +F RM E P
Sbjct: 168 LVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRP 227
Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
+ +T V VL C +G G+ +H + S I+ N+ VG L++MY+KCG + +A V
Sbjct: 228 DNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTV 286
Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM------------------------- 200
F ++ KDVV WN+M+ GY+ G +DA++LF +M
Sbjct: 287 FSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLG 346
Query: 201 ------CRIRL----KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG- 249
CR L KP+++T I +LS CA G + G+ + +Y I+ + +G
Sbjct: 347 YEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE-IHCYAIKYPIDLRKNGHGD 405
Query: 250 ------CMVNLLSRAGQVEEAYKLVMDMKI-EPDSVLWGTLLGACRLHGN 292
++++ ++ +V+ A + + E D V W ++G HG+
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 10/269 (3%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
+++ Y G ++ A L D V WN +I Y +G AN+ L LF M +
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
P+ T V ACG+I ++ G H+ + I NV VG AL+ MYS+C SL DAR
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFIS-NVFVGNALVAMYSRCRSLSDARK 183
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
VFD ++ DVV WNS+I YA G K AL++F+ M +P +IT + +L CA G
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLG 243
Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
+ G++ I+ C+V++ ++ G ++EA + +M ++ D V W +
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVG-NCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAM 301
Query: 284 LGAC----RLHGNIALGEKIAEYLISQNL 308
+ R + L EK+ E I ++
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Query: 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
L+VS L+D+YA+ G + A +F M ++ V+ T+++T
Sbjct: 513 LFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT-------------------- 552
Query: 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
GY HG EAL +F M + + VT + VL AC G ++ G
Sbjct: 553 -----------GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601
Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHG 188
+ ++ + + L+++ + G L A RL+ + + VVW + + +HG
Sbjct: 602 FNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHG 661
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/521 (41%), Positives = 305/521 (58%), Gaps = 43/521 (8%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQ------- 54
K L L+V LV +Y + G + A + M +R +VS +++ YA+
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226
Query: 55 ---------------GEVAA---------------ARVLFDDMEEKDVVCWNVMIDGYAQ 84
G +A+ + +F M +K +V WNVMI Y +
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286
Query: 85 HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
+ + EA+ L+ RM A+ EP+ V+ +VL ACG AL G+ IH YIE + I N+
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIP-NLL 345
Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
+ ALI+MY+KCG L+ AR VF+ + +DVV W +MI Y G G DA+ LF+++
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405
Query: 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264
L P I F+ L+AC+HAGL+ EGR F M D Y I P++EH CMV+LL RAG+V+EA
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465
Query: 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324
Y+ + DM +EP+ +WG LLGACR+H + +G A+ L SG YVLLSNIYA
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525
Query: 325 GNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWL 384
G W+ V +R +MK KG++K PG S++E++ +H FL GD HP+S EIY L+ + +
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKM 585
Query: 385 KAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ-----PGTSIKIVKNLRV 439
K GYVP ++ LHD+ E+ K+ L VHSEKLA+ F L++T+ +I+I KNLR+
Sbjct: 586 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRI 645
Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
C DCH KLIS+ T R+I++RD NRFH F G CSCGDYW
Sbjct: 646 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
++ YA +VA+AR +FD++ E++V+ NVMI Y +G E + +F M V P+
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
T VL AC G + GR IH + + VG L++MY KCG L +ARLV
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
D ++ +DVV WNS++VGYA + DAL++ EM +++ T LL A ++ N
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTEN 258
Query: 227 ---EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK---IEPDSVLW 280
FF K + M+ + + EA +L M+ EPD+V
Sbjct: 259 VMYVKDMFFKMGKKSLV------SWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312
Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN----IYAAIGNWDGVARVRTL 336
++L AC ++LG+KI Y+ + L + +LL N +YA G + V
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKLIPN---LLLENALIDMYAKCGCLEKARDVFEN 369
Query: 337 MKEKGV 342
MK + V
Sbjct: 370 MKSRDV 375
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
R +HS I +++ N +G L+ Y+ + AR VFD + +++V++ N MI Y
Sbjct: 59 RTVHSRI-ILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN 117
Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
+GF + +++F MC ++P TF +L AC+ +G + GR+ + + + +
Sbjct: 118 NGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLSSTLF 176
Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
+V++ + G + EA +LV+D D V W +L+
Sbjct: 177 VGNGLVSMYGKCGFLSEA-RLVLDEMSRRDVVSWNSLV 213
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/448 (45%), Positives = 299/448 (66%), Gaps = 15/448 (3%)
Query: 46 TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM--LAEKV 103
T++ Y++ G++ A +F ME++D+V WN MI GY +AL+L +M L KV
Sbjct: 445 TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKV 504
Query: 104 ---------EPNEVTAVAVLSACGQIGALESGRWIHSY-IENSRNIKVNVQVGTALINMY 153
+PN +T + +L +C + AL G+ IH+Y I+N N+ +V VG+AL++MY
Sbjct: 505 SKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSALVDMY 562
Query: 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI 213
+KCG L+ +R VFD++ K+V+ WN +I+ Y MHG G++A+ L M +KP+++TFI
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622
Query: 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKI 273
+ +AC+H+G+V+EG R F MK +Y +EP +HY C+V+LL RAG+++EAY+L+ M
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682
Query: 274 EPDSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332
+ + W +LLGA R+H N+ +GE A+ LI + YVLL+NIY++ G WD
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742
Query: 333 VRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392
VR MKE+GV+KEPGCS IE ++VH+F+AGD HP+S+++ LE + ++ EGYVP
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802
Query: 393 TQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
T VLH++ E +K+ L HSEKLA+AFG+++T PGT I++ KNLRVC DCH K ISK
Sbjct: 803 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 862
Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
R+I++RD RFH F NGTCSCGDYW
Sbjct: 863 IVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 161/345 (46%), Gaps = 46/345 (13%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
+ T++ Y K G++A+++VL +D+V WN ++ Q+ EAL R M+ E V
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGV 298
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
EP+E T +VL AC + L +G+ +H+Y + ++ N VG+AL++MY C + R
Sbjct: 299 EPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGR 358
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACAHA 222
VFD + D+ + +WN+MI GY+ + K+AL LF M L + T G++ AC +
Sbjct: 359 RVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRS 418
Query: 223 G-----------LVNEG---RRFF-NTMKDEYAIEPKV---------------------- 245
G +V G RF NT+ D Y+ K+
Sbjct: 419 GAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMI 478
Query: 246 ------EHYGCMVNLLSRAGQVE-EAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298
EH+ + LL + +E + K + ++P+S+ T+L +C +A G++
Sbjct: 479 TGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE 538
Query: 299 IAEYLISQNLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
I Y I NLA L ++YA G +V + +K V
Sbjct: 539 IHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV 583
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 48/301 (15%)
Query: 5 SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLF 64
SLD++ +V ++LVD+Y C KQ V + R +F
Sbjct: 333 SLDENSFVGSALVDMY-----------------------------CNCKQ--VLSGRRVF 361
Query: 65 DDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML-AEKVEPNEVTAVAVLSACGQIGAL 123
D M ++ + WN MI GY+Q+ EAL+LF M + + N T V+ AC + GA
Sbjct: 362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421
Query: 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183
IH ++ R + + V L++MYS+ G + A +F ++ D+D+V WN+MI G
Sbjct: 422 SRKEAIHGFVVK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Query: 184 YAMHGFGKDALQLFNEM-----------CRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232
Y +DAL L ++M R+ LKP+ IT + +L +CA + +G+
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540
Query: 233 N-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
+K+ A + V +V++ ++ G ++ + K V D + + + W ++ A +HG
Sbjct: 541 AYAIKNNLATDVAVG--SALVDMYAKCGCLQMSRK-VFDQIPQKNVITWNVIIMAYGMHG 597
Query: 292 N 292
N
Sbjct: 598 N 598
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 5/195 (2%)
Query: 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML 99
S+ T++ Y K G+ A +FD + E++ V WN +I AL FR ML
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCML 191
Query: 100 AEKVEPNEVTAVAVLSACGQIGALES---GRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
E VEP+ T V+V++AC + E G+ +H+Y R ++N + L+ MY K
Sbjct: 192 DENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY--GLRKGELNSFIINTLVAMYGKL 249
Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
G L ++++ +D+V WN+++ + +AL+ EM ++P + T +L
Sbjct: 250 GKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVL 309
Query: 217 SACAHAGLVNEGRRF 231
AC+H ++ G+
Sbjct: 310 PACSHLEMLRTGKEL 324
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 104/200 (52%), Gaps = 11/200 (5%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
+ ++ YAK G + +R +FD + +K+V+ WNV+I Y HG EA+ L R M+ + V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PNEVT ++V +AC G ++ G I ++ ++ + ++++ + G +K+A
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675
Query: 165 VFDRV--NDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDIT-FIGLLSA 218
+ + + + W+S++ +H G+ A Q I+L+P+ + ++ L +
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVASHYVLLANI 730
Query: 219 CAHAGLVNEGRRFFNTMKDE 238
+ AGL ++ MK++
Sbjct: 731 YSSAGLWDKATEVRRNMKEQ 750
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%)
Query: 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
W ++ + L EA++ + M+ ++P+ A+L A + +E G+ IH+++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
+V V L+N+Y KCG VFDR+++++ V WNS+I + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 195 QLFNEMCRIRLKPSDITFIGLLSACAH 221
+ F M ++PS T + +++AC++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSN 211
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/431 (46%), Positives = 288/431 (66%), Gaps = 2/431 (0%)
Query: 51 YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVT 109
YAK G V +AR +F+ + DV+ WN +I GYAQ+G A+EA+ ++ M E ++ N+ T
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453
Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169
V+VL AC Q GAL G +H + + + ++V V T+L +MY KCG L+DA +F ++
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512
Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229
+ V WN++I + HG G+ A+ LF EM +KP ITF+ LLSAC+H+GLV+EG+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572
Query: 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289
F M+ +Y I P ++HYGCMV++ RAGQ+E A K + M ++PD+ +WG LL ACR+
Sbjct: 573 WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRV 632
Query: 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
HGN+ LG+ +E+L + G +VLLSN+YA+ G W+GV +R++ KG++K PG S
Sbjct: 633 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 692
Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
S+E+ NKV F G+ HP +E+Y L + LK GYVP + VL D+ + +K++ L
Sbjct: 693 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHIL 752
Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
HSE+LA+AF LI+T T+I+I KNLRVC DCH+V K ISK T R+I++RD NRFHHF
Sbjct: 753 MSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 812
Query: 470 VNGTCSCGDYW 480
NG CSCGDYW
Sbjct: 813 KNGVCSCGDYW 823
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 14/275 (5%)
Query: 46 TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
+++ Y++ V AR+LFD+M +D+ WN MI GY Q G A EAL L + A
Sbjct: 190 SLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM---- 245
Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
+ VT V++LSAC + G G IHSY ++ + V LI++Y++ G L+D + V
Sbjct: 246 DSVTVVSLLSACTEAGDFNRGVTIHSY-SIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304
Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
FDR+ +D++ WNS+I Y ++ A+ LF EM R++P +T I L S + G +
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364
Query: 226 NEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
R T++ + +E + +V + ++ G V+ A + V + D + W T++
Sbjct: 365 RACRSVQGFTLRKGWFLE-DITIGNAVVVMYAKLGLVDSA-RAVFNWLPNTDVISWNTII 422
Query: 285 GACRLHGNIALGEKIAEYLISQN----LANSGTYV 315
+G + E I Y I + AN GT+V
Sbjct: 423 SGYAQNGFAS--EAIEMYNIMEEEGEIAANQGTWV 455
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 146/305 (47%), Gaps = 49/305 (16%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
++K L+ +L+VS L+DLYA G + +K+F
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVF--------------------------- 305
Query: 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120
D M +D++ WN +I Y + A+ LF+ M +++P+ +T +++ S Q+
Sbjct: 306 ----DRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQL 361
Query: 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180
G + + R + + ++ +G A++ MY+K G + AR VF+ + + DV+ WN++
Sbjct: 362 GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTI 421
Query: 181 IVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTM---- 235
I GYA +GF +A++++N M + + T++ +L AC+ AG + +G + +
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481
Query: 236 --KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNI 293
D + + + YG + G++E+A L + +SV W TL+ HG+
Sbjct: 482 LYLDVFVVTSLADMYG-------KCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH- 532
Query: 294 ALGEK 298
GEK
Sbjct: 533 --GEK 535
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 22/300 (7%)
Query: 48 LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR-MLAEKVEPN 106
L CY G VA AR FD ++ +DV WN+MI GY + G ++E + F ML+ + P+
Sbjct: 95 LYCYL--GNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPD 152
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
T +VL AC + G IH + +V V +LI++YS+ ++ +AR++F
Sbjct: 153 YRTFPSVLKACRTV---IDGNKIHC-LALKFGFMWDVYVAASLIHLYSRYKAVGNARILF 208
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLV 225
D + +D+ WN+MI GY G K+AL L N L+ D +T + LLSAC AG
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAKEALTLSNG-----LRAMDSVTVVSLLSACTEAGDF 263
Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
N G ++ ++ +E ++ +++L + G++ + K V D D + W +++
Sbjct: 264 NRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQK-VFDRMYVRDLISWNSIIK 321
Query: 286 ACRLHGN----IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341
A L+ I+L E +S+ + T + L++I + +G+ V+ KG
Sbjct: 322 AYELNEQPLRAISL---FQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 40/220 (18%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K L D++V TSL D+Y + G + A LF +P+ + V T++ C+
Sbjct: 478 LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH---------- 527
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
G+ HG +A++LF+ ML E V+P+ +T V +LSAC G
Sbjct: 528 -------------------GF--HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSM 180
++ G+W ++ I +++ +++MY + G L+ A + + D +W ++
Sbjct: 567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626
Query: 181 IVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLS 217
+ +HG GK A + E ++P + + LLS
Sbjct: 627 LSACRVHGNVDLGKIASEHLFE-----VEPEHVGYHVLLS 661
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 39/236 (16%)
Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182
L+S + +H+ + S+ I+ NV + L+N+Y G++ AR FD + ++DV WN MI
Sbjct: 67 LQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125
Query: 183 GYAMHGFGKDALQLFN-EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF------FNTM 235
GY G + ++ F+ M L P TF +L AC V +G + F M
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFM 182
Query: 236 KDEYAIEPKVEHYG------------------------CMVNLLSRAGQVEEAYKLVMDM 271
D Y + Y M++ ++G +EA L +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242
Query: 272 KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIG 325
+ DSV +LL AC G+ G I Y I L S +V L ++YA G
Sbjct: 243 R-AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL-ESELFVSNKLIDLYAEFG 296
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/472 (45%), Positives = 294/472 (62%), Gaps = 4/472 (0%)
Query: 12 VSTSLVDLYARGGDVLSAEKLFATMPQRSLV--SLTTMLTCYAKQGEVAAARVLFDDMEE 69
V +L+ +Y+R G V +A +L + L T +L Y K G++ A+ +F +++
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKD 375
Query: 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129
+DVV W MI GY QHG EA+ LFR M+ PN T A+LS + +L G+ I
Sbjct: 376 RDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQI 435
Query: 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN-DKDVVVWNSMIVGYAMHG 188
H S I +V V ALI MY+K G++ A FD + ++D V W SMI+ A HG
Sbjct: 436 HGSAVKSGEI-YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHG 494
Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY 248
++AL+LF M L+P IT++G+ SAC HAGLVN+GR++F+ MKD I P + HY
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554
Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
CMV+L RAG ++EA + + M IEPD V WG+LL ACR+H NI LG+ AE L+
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEP 614
Query: 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHP 368
NSG Y L+N+Y+A G W+ A++R MK+ V+KE G S IE+ +KVH F D HP
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHP 674
Query: 369 KSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPG 428
+ EIYM +++I +K GYVP T VLHD+ E+ K+ L HSEKLA+AFGLIST
Sbjct: 675 EKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDK 734
Query: 429 TSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
T+++I+KNLRVC DCH K ISK GR+I++RD RFHHF +G CSC DYW
Sbjct: 735 TTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 166/334 (49%), Gaps = 50/334 (14%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K L +Y+ +L+++Y++ G L A KLF MP R+ S T+L+ Y+K+G++ +
Sbjct: 41 IKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTC 100
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
FD + ++D V W MI GY G ++A+ + M+ E +EP + T VL++
Sbjct: 101 EFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATR 160
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR------------- 168
+E+G+ +HS+I ++ NV V +L+NMY+KCG A+ VFDR
Sbjct: 161 CMETGKKVHSFIVK-LGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219
Query: 169 ------------------VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD 209
+ ++D+V WNSMI G+ G+ AL +F++M R L P
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279
Query: 210 ITFIGLLSACAHAGLVNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
T +LSACA+ + G++ + + + I V ++++ SR G VE A +L+
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV--LNALISMYSRCGGVETARRLI 337
Query: 269 -----MDMKIEPDSVLWGTLLGACRLHGNIALGE 297
D+KIE + L L G I LG+
Sbjct: 338 EQRGTKDLKIEGFTAL---------LDGYIKLGD 362
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/514 (40%), Positives = 309/514 (60%), Gaps = 41/514 (7%)
Query: 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSL----VSLTTMLTC------------ 50
D+ + TS++ YAR G A KLF M + + ++T +L C
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418
Query: 51 -----------------------YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGL 87
YAK G + A ++F +M KD++ WN +I GY+++
Sbjct: 419 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 478
Query: 88 ANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG 146
ANEAL LF +L EK P+E T VL AC + A + GR IH YI + + V
Sbjct: 479 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS-DRHVA 537
Query: 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206
+L++MY+KCG+L A ++FD + KD+V W MI GY MHGFGK+A+ LFN+M + ++
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597
Query: 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266
+I+F+ LL AC+H+GLV+EG RFFN M+ E IEP VEHY C+V++L+R G + +AY+
Sbjct: 598 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 657
Query: 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326
+ +M I PD+ +WG LL CR+H ++ L EK+AE + N+G YVL++NIYA
Sbjct: 658 FIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEK 717
Query: 327 WDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386
W+ V R+R + ++G++K PGCS IE+ +V+ F+AGD +P+++ I L ++ +
Sbjct: 718 WEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777
Query: 387 EGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAV 446
EGY P T+ L D E +K+ +L HSEKLA+A G+IS+ G I++ KNLRVC DCH +
Sbjct: 778 EGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEM 837
Query: 447 FKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
K +SK T R+I++RD NRFH F +G CSC +W
Sbjct: 838 AKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 149/276 (53%), Gaps = 5/276 (1%)
Query: 12 VSTSLVDLYA-RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
VS S L + GG+ L L + +R+ V +++ Y K V +AR +FD+M E+
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTER 259
Query: 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
DV+ WN +I+GY +GLA + L +F +ML +E + T V+V + C + GR +H
Sbjct: 260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319
Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
S I + L++MYSKCG L A+ VF ++D+ VV + SMI GYA G
Sbjct: 320 S-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA 378
Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
+A++LF EM + P T +L+ CA L++EG+R +K E + +
Sbjct: 379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK-ENDLGFDIFVSNA 437
Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGA 286
++++ ++ G ++EA + +M+++ D + W T++G
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGG 472
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 153/329 (46%), Gaps = 41/329 (12%)
Query: 51 YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
Y G++ A +FD+++ + + WN++++ A+ G + ++ LF++M++ VE + T
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
V + + ++ G +H +I S + N VG +L+ Y K + AR VFD +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT 257
Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR- 229
++DV+ WNS+I GY +G + L +F +M ++ T + + + CA + L++ GR
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317
Query: 230 --------------RFFNTMKDEYA---------------IEPKVEHYGCMVNLLSRAGQ 260
RF NT+ D Y+ + V Y M+ +R G
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377
Query: 261 VEEAYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317
EA KL +M+ I PD +L C + + G+++ E++ +L G + +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL---GFDIFV 434
Query: 318 SN----IYAAIGNWDGVARVRTLMKEKGV 342
SN +YA G+ V + M+ K +
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKDI 463
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 7/217 (3%)
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
++ V N + + + G A+ L ++ K + + T +VL C +L+ G+
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115
Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
+ ++I + ++ +G+ L MY+ CG LK+A VFD V + + WN ++ A G
Sbjct: 116 VDNFIRGN-GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174
Query: 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEH 247
++ LF +M ++ TF + + + V+ G + +K + V +
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN 234
Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
+V + +V+ A K V D E D + W +++
Sbjct: 235 --SLVAFYLKNQRVDSARK-VFDEMTERDVISWNSII 268
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/470 (42%), Positives = 307/470 (65%), Gaps = 2/470 (0%)
Query: 12 VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
+ +L+D+Y + +A ++F M +++V+ +++ Y + GEV AA F+ M EK+
Sbjct: 374 ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKN 433
Query: 72 VVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIH 130
+V WN +I G Q L EA+ +F M + E V + VT +++ SACG +GAL+ +WI+
Sbjct: 434 IVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIY 493
Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190
YIE + I+++V++GT L++M+S+CG + A +F+ + ++DV W + I AM G
Sbjct: 494 YYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNA 552
Query: 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250
+ A++LF++M LKP + F+G L+AC+H GLV +G+ F +M + + P+ HYGC
Sbjct: 553 ERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGC 612
Query: 251 MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310
MV+LL RAG +EEA +L+ DM +EP+ V+W +LL ACR+ GN+ + AE +
Sbjct: 613 MVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER 672
Query: 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKS 370
+G+YVLLSN+YA+ G W+ +A+VR MKEKG++K PG SSI++ K HEF +GD HP+
Sbjct: 673 TGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEM 732
Query: 371 KEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS 430
I ML+E++ G+VP VL D+ EK+K L HSEKLA+A+GLIS+ GT+
Sbjct: 733 PNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTT 792
Query: 431 IKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
I+IVKNLRVC DCH+ K SK R+I++RD NRFH+ G CSCGD+W
Sbjct: 793 IRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 117/194 (60%), Gaps = 11/194 (5%)
Query: 29 AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88
A+ LF Q SLV YA+ GE+ +AR +FD+M E++VV W MI GYA+ A
Sbjct: 166 AKDLFV---QNSLVHF------YAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216
Query: 89 NEALVLFRRMLA-EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147
+A+ LF RM+ E+V PN VT V V+SAC ++ LE+G ++++I NS I+VN + +
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNS-GIEVNDLMVS 275
Query: 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207
AL++MY KC ++ A+ +FD ++ + N+M Y G ++AL +FN M ++P
Sbjct: 276 ALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRP 335
Query: 208 SDITFIGLLSACAH 221
I+ + +S+C+
Sbjct: 336 DRISMLSAISSCSQ 349
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 48/309 (15%)
Query: 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134
+N +I GYA GL NEA++LF RM+ + P++ T LSAC + A +G IH I
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 135 NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194
K ++ V +L++ Y++CG L AR VFD +++++VV W SMI GYA F KDA+
Sbjct: 162 KMGYAK-DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 195 QLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK----------------- 236
LF M R + P+ +T + ++SACA + G + + ++
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDM 280
Query: 237 --------------DEYAIEPKVEHYGCMVNLLSRAGQVEEA---YKLVMDMKIEPDSVL 279
DEY ++ M + R G EA + L+MD + PD +
Sbjct: 281 YMKCNAIDVAKRLFDEYG-ASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339
Query: 280 WGTLLGACRLHGNIALGEKIAEYLISQ------NLANSGTYVLLSNIYAAIGNWDGVARV 333
+ + +C NI G+ Y++ N+ N+ L ++Y D R+
Sbjct: 340 MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA-----LIDMYMKCHRQDTAFRI 394
Query: 334 RTLMKEKGV 342
M K V
Sbjct: 395 FDRMSNKTV 403
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/436 (43%), Positives = 288/436 (66%), Gaps = 2/436 (0%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
+ +L Y + G + A+++FD +E ++ V WN +I G+A+ +AL LF+ ML +
Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 259
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
P+ + ++ AC G LE G+W+H+Y+ S K+ G L++MY+K GS+ DAR
Sbjct: 260 PSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE-KLVAFAGNTLLDMYAKSGSIHDARK 318
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+FDR+ +DVV WNS++ YA HGFGK+A+ F EM R+ ++P++I+F+ +L+AC+H+GL
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
++EG ++ MK + I P+ HY +V+LL RAG + A + + +M IEP + +W LL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437
Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
ACR+H N LG AE++ + + G +V+L NIYA+ G W+ ARVR MKE GV+K
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497
Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
EP CS +E+ N +H F+A D RHP+ +EI EE+ +K GYVP T V+ + +++
Sbjct: 498 EPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQE 557
Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
++ +L+ HSEK+A+AF L++T PG++I I KN+RVC DCH KL SK GR+I++RD N
Sbjct: 558 REVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTN 617
Query: 465 RFHHFVNGTCSCGDYW 480
RFHHF +G CSC DYW
Sbjct: 618 RFHHFKDGNCSCKDYW 633
Score = 138 bits (348), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 137/261 (52%), Gaps = 5/261 (1%)
Query: 32 LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91
+ ++ + +V T+L YAK G + AR +F+ M ++D V W +I GY+QH +A
Sbjct: 86 ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145
Query: 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151
L+ F +ML PNE T +V+ A G +H + NV VG+AL++
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKC-GFDSNVHVGSALLD 204
Query: 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211
+Y++ G + DA+LVFD + ++ V WN++I G+A + AL+LF M R +PS +
Sbjct: 205 LYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFS 264
Query: 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMD 270
+ L AC+ G + +G+ M + E V G ++++ +++G + +A K + D
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIK--SGEKLVAFAGNTLLDMYAKSGSIHDARK-IFD 321
Query: 271 MKIEPDSVLWGTLLGACRLHG 291
+ D V W +LL A HG
Sbjct: 322 RLAKRDVVSWNSLLTAYAQHG 342
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 49/255 (19%)
Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172
+L C L GR +H++I S + ++ +G L+NMY+KCGSL++AR VF+++ +
Sbjct: 66 LLKKCTVFKLLIQGRIVHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA--------CAHA-- 222
D V W ++I GY+ H DAL FN+M R P++ T ++ A C H
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184
Query: 223 -------------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
GL+++ + F+ ++ + + ++ +R
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-----WNALIAGHAR 239
Query: 258 AGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANS 311
E+A +L M P + +L GAC G + G+ + Y+I +A +
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299
Query: 312 GTYVLLSNIYAAIGN 326
G +L ++YA G+
Sbjct: 300 GNTLL--DMYAKSGS 312
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 36/229 (15%)
Query: 11 YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
+ +L+D+YA+ G + A K+F + +R +VS ++LT Y
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY------------------- 338
Query: 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
AQHG EA+ F M + PNE++ ++VL+AC G L+ G W +
Sbjct: 339 ------------AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG-WHY 385
Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMHGF 189
+ I ++++ + G L A R + + + +W +++ MH
Sbjct: 386 YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH-- 443
Query: 190 GKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKD 237
L + L P D + L + A G N+ R MK+
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKE 492
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/474 (41%), Positives = 307/474 (64%), Gaps = 3/474 (0%)
Query: 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE 69
+YV +++D+Y + + A K+F MP+R ++S T ++ YA+ G + A LF+ +
Sbjct: 184 VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPT 243
Query: 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE-SGRW 128
KD+V W M+ G+AQ+ EAL F RM + +EVT +SAC Q+GA + + R
Sbjct: 244 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 303
Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHG 188
+ ++ + +V +G+ALI+MYSKCG++++A VF +N+K+V ++SMI+G A HG
Sbjct: 304 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHG 363
Query: 189 FGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
++AL LF+ M + +KP+ +TF+G L AC+H+GLV++GR+ F++M + ++P +H
Sbjct: 364 RAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH 423
Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307
Y CMV+LL R G+++EA +L+ M +EP +WG LLGACR+H N + E AE+L
Sbjct: 424 YTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELE 483
Query: 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS-SIELSNKVHEFLAGDLR 366
G Y+LLSN+YA+ G+W GV RVR L+KEKG++K P S ++ + ++H+F G+L
Sbjct: 484 PDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLN 543
Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQ 426
HP S +I LEE+ L GY P V +D+ + K+ L H+EKLA+AF L++T
Sbjct: 544 HPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTN 603
Query: 427 PGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
++I I+KNLR+C DCH +L S+ TG+ I+MRD RFHHF +G CSCGD+W
Sbjct: 604 RDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 34/295 (11%)
Query: 60 ARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119
AR + + ++ ++ W +I GYA G +EA+ ++ M E++ P T A+L ACG
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV----- 174
+ L GR H+ R V VG +I+MY KC S+ AR VFD + ++DV
Sbjct: 162 MKDLNLGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTE 220
Query: 175 --------------------------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208
V W +M+ G+A + ++AL+ F+ M + ++
Sbjct: 221 LIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRAD 280
Query: 209 DITFIGLLSACAHAGLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
++T G +SACA G R K Y+ V ++++ S+ G VEEA +
Sbjct: 281 EVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNV 340
Query: 268 VMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322
M M + + +++ HG + Y+++Q T + + A
Sbjct: 341 FMSMN-NKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMA 394
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 32/160 (20%)
Query: 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVL 63
+S + + ++L+D+Y++ G+V A +F +M +++ +
Sbjct: 312 YSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFT-------------------- 351
Query: 64 FDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGA 122
++ MI G A HG A EAL LF M+ + +++PN VT V L AC G
Sbjct: 352 -----------YSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGL 400
Query: 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
++ GR + + + ++ T ++++ + G L++A
Sbjct: 401 VDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEA 440
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 191/475 (40%), Positives = 295/475 (62%), Gaps = 2/475 (0%)
Query: 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
D + SLV LY + G A +F MP + LVS +L+ Y G + A+++F +
Sbjct: 317 DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKE 376
Query: 67 MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
M+EK+++ W +MI G A++G E L LF M E EP + + +C +GA +G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436
Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
+ H+ + ++ G ALI MY+KCG +++AR VF + D V WN++I
Sbjct: 437 QQYHAQLLKI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495
Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
HG G +A+ ++ EM + ++P IT + +L+AC+HAGLV++GR++F++M+ Y I P +
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGAD 555
Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306
HY +++LL R+G+ +A ++ + +P + +W LL CR+HGN+ LG A+ L
Sbjct: 556 HYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL 615
Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
+ GTY+LLSN++AA G W+ VARVR LM+++GV+KE CS IE+ +VH FL D
Sbjct: 616 IPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTS 675
Query: 367 HPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI-GEKQKQNSLEVHSEKLAVAFGLIST 425
HP+++ +Y+ L+++ ++ GYVP T VLHD+ + K++ L HSEK+AVAFGL+
Sbjct: 676 HPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKL 735
Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
PGT+I+I KNLR C DCH F+ +S R I++RDR RFHHF NG CSCG++W
Sbjct: 736 PPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 40/333 (12%)
Query: 12 VSTSLVDLYARGGD----VLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDM 67
VS +LV +Y++ + SA K+F + ++ S TTM+T Y K G L + M
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245
Query: 68 EEK-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
++ +V +N MI GY G EAL + RRM++ +E +E T +V+ AC G L+ G
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305
Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY-- 184
+ +H+Y+ R + +L+++Y KCG +AR +F+++ KD+V WN+++ GY
Sbjct: 306 KQVHAYV--LRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVS 363
Query: 185 -----------------------------AMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215
A +GFG++ L+LF+ M R +P D F G
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423
Query: 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275
+ +CA G G+++ + + + + ++ + ++ G VEEA ++ M
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLL-KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-L 481
Query: 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
DSV W L+ A HG+ A + E ++ + +
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 161/360 (44%), Gaps = 71/360 (19%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+ F ++ L+D+Y + ++ A +LF + + ++ TTM++ Y G++ AR
Sbjct: 41 ITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLAR 100
Query: 62 VLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA--- 116
+F+ +D V +N MI G++ + A+ LF +M E +P+ T +VL+
Sbjct: 101 GVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLAL 160
Query: 117 -------CGQI--GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS----LKDAR 163
C Q AL+SG YI V AL+++YSKC S L AR
Sbjct: 161 VADDEKQCVQFHAAALKSGA---GYI---------TSVSNALVSVYSKCASSPSLLHSAR 208
Query: 164 LVFDRVNDKD--------------------------------VVVWNSMIVGYAMHGFGK 191
VFD + +KD +V +N+MI GY GF +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268
Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF--FNTMKDEYAIEPKVEHY- 248
+AL++ M ++ + T+ ++ ACA AGL+ G++ + +++++ H+
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----HFD 323
Query: 249 GCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308
+V+L + G+ +EA + M + D V W LL G+I + I + + +N+
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 32/188 (17%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K D L +L+ +YA+ G V A ++F TMP C
Sbjct: 444 LKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP------------CL---------- 481
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
D V WN +I QHG EA+ ++ ML + + P+ +T + VL+AC G
Sbjct: 482 ---------DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV-VWNSM 180
++ GR +E I LI++ + G DA V + + K +W ++
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592
Query: 181 IVGYAMHG 188
+ G +HG
Sbjct: 593 LSGCRVHG 600
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/448 (46%), Positives = 293/448 (65%), Gaps = 15/448 (3%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
++ Y G + AR +FD+M E+ +V WN MID + G + AL LFR M EP+
Sbjct: 192 LIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPD 250
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARL 164
T +VLSAC +G+L G W H+++ ++ V +V V +LI MY KCGSL+ A
Sbjct: 251 GYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQ 310
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC--RIRLKPSDITFIGLLSACAHA 222
VF + +D+ WN+MI+G+A HG ++A+ F+ M R ++P+ +TF+GLL AC H
Sbjct: 311 VFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHR 370
Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
G VN+GR++F+ M +Y IEP +EHYGC+V+L++RAG + EA +VM M ++PD+V+W +
Sbjct: 371 GFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRS 430
Query: 283 LLGACRLHG-NIALGEKIAEYLI-------SQNLANSGTYVLLSNIYAAIGNWDGVARVR 334
LL AC G ++ L E+IA +I S N SG YVLLS +YA+ W+ V VR
Sbjct: 431 LLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVR 490
Query: 335 TLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVP-QT 393
LM E G++KEPGCSSIE++ HEF AGD HP++K+IY L+ I+ L++ GY+P ++
Sbjct: 491 KLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 550
Query: 394 QIVLHD-IGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISK 452
Q L D + K+ SL +HSE+LA+AFGLI+ P T I+I KNLRVC DCH V KLISK
Sbjct: 551 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 610
Query: 453 FTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
+I++RDR RFHHF +G+CSC DYW
Sbjct: 611 VFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)
Query: 27 LSAEKLFATMPQR--SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84
L A L T P+ +L +L + +V A +FD +E WN +I A
Sbjct: 67 LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAH 126
Query: 85 H-GLANEALVLFRRMLAE-KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN 142
EA +L+R+ML + P++ T VL AC I G+ +H I +
Sbjct: 127 DVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK-HGFGGD 185
Query: 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202
V V LI++Y CG L AR VFD + ++ +V WNSMI G ALQLF EM R
Sbjct: 186 VYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR 245
Query: 203 IRLKPSDITFIGLLSACAHAGLVNEGR--RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
+P T +LSACA G ++ G F K + + V ++ + + G
Sbjct: 246 -SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGS 304
Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
+ A ++ M+ + D W ++ HG
Sbjct: 305 LRMAEQVFQGMQ-KRDLASWNAMILGFATHG 334
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 46 TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRML--AEKV 103
+++ Y K G + A +F M+++D+ WN MI G+A HG A EA+ F RM+ E V
Sbjct: 294 SLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENV 353
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA- 162
PN VT V +L AC G + GR + I+ ++ ++++ ++ G + +A
Sbjct: 354 RPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAI 413
Query: 163 RLVFDRVNDKDVVVWNSMI 181
+V D V+W S++
Sbjct: 414 DMVMSMPMKPDAVIWRSLL 432
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/445 (45%), Positives = 284/445 (63%), Gaps = 3/445 (0%)
Query: 38 QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97
+RS T +L Y K G+V A +F +++KD+V W+ M+ GYAQ G A+ +F
Sbjct: 425 ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 484
Query: 98 MLAEKVEPNEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156
+ ++PNE T ++L+ C A + G+ H + SR + ++ V +AL+ MY+K
Sbjct: 485 LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMYAKK 543
Query: 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216
G+++ A VF R +KD+V WNSMI GYA HG AL +F EM + ++K +TFIG+
Sbjct: 544 GNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVF 603
Query: 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276
+AC HAGLV EG ++F+ M + I P EH CMV+L SRAGQ+E+A K++ +M
Sbjct: 604 AACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAG 663
Query: 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336
S +W T+L ACR+H LG AE +I+ +S YVLLSN+YA G+W A+VR L
Sbjct: 664 STIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKL 723
Query: 337 MKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIV 396
M E+ V+KEPG S IE+ NK + FLAGD HP +IYM LE+++ LK GY P T V
Sbjct: 724 MNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYV 783
Query: 397 LHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456
L DI ++ K+ L HSE+LA+AFGLI+T G+ + I+KNLRVC DCH V KLI+K R
Sbjct: 784 LQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEER 843
Query: 457 KIMMRDRNRFHHF-VNGTCSCGDYW 480
+I++RD NRFHHF +G CSCGD+W
Sbjct: 844 EIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 166/375 (44%), Gaps = 69/375 (18%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+KF D+ V TSLVD Y +G + K G R
Sbjct: 120 IKFGFLDDVSVGTSLVDTYMKGSNF--------------------------KDG-----R 148
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
+FD+M+E++VV W +I GYA++ + +E L LF RM E +PN T A L + G
Sbjct: 149 KVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEG 208
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181
G +H+ + + + + V +LIN+Y KCG+++ AR++FD+ K VV WNSMI
Sbjct: 209 VGGRGLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 267
Query: 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-----------HAGLVNEGRR 230
GYA +G +AL +F M ++ S+ +F ++ CA H +V G
Sbjct: 268 SGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFL 327
Query: 231 FFNTMKDEYAIEPK-----------VEHYGCMVNLLSRAGQV---------EEAYKLVMD 270
F ++ + + GC+ N++S + EEA L +
Sbjct: 328 FDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSE 387
Query: 271 MK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327
MK + P+ + +L A + I+ E A+ + + +S L + Y +G
Sbjct: 388 MKRKGVRPNEFTYSVILTALPV---ISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKV 444
Query: 328 DGVARVRTLMKEKGV 342
+ A+V + + +K +
Sbjct: 445 EEAAKVFSGIDDKDI 459
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 136/254 (53%), Gaps = 17/254 (6%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDME-EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
T ++ Y+K + A LF ++ +VV W MI G+ Q+ EA+ LF M + V
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
PNE T +L+A I E +H+ + + N + + VGTAL++ Y K G +++A
Sbjct: 394 RPNEFTYSVILTALPVISPSE----VHAQVVKT-NYERSSTVGTALLDAYVKLGKVEEAA 448
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
VF ++DKD+V W++M+ GYA G + A+++F E+ + +KP++ TF +L+ CA
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 508
Query: 224 L-VNEGRRFFNTMKDEYAIEPKVEHYGC----MVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
+ +G++F +AI+ +++ C ++ + ++ G +E A + V + E D V
Sbjct: 509 ASMGQGKQFHG-----FAIKSRLDSSLCVSSALLTMYAKKGNIESAEE-VFKRQREKDLV 562
Query: 279 LWGTLLGACRLHGN 292
W +++ HG
Sbjct: 563 SWNSMISGYAQHGQ 576
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 16/246 (6%)
Query: 55 GEVAAARV-----LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVT 109
G V+++R+ LFD +D + ++ G+++ G EA LF + +E +
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLV 165
+VL + GR +H + IK +V VGT+L++ Y K + KD R V
Sbjct: 96 FSSVLKVSATLCDELFGRQLHC-----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150
Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
FD + +++VV W ++I GYA + + L LF M +P+ TF L A G+
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVG 210
Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
G + +T+ + ++ + ++NL + G V +A +++ D V W +++
Sbjct: 211 GRGLQ-VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA-RILFDKTEVKSVVTWNSMIS 268
Query: 286 ACRLHG 291
+G
Sbjct: 269 GYAANG 274
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 34/217 (15%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K LD L VS++L+ +YA+ G++ SAE++F ++ LVS +M++ YA+ G+
Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQ----- 576
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
A +AL +F+ M KV+ + VT + V +AC G
Sbjct: 577 --------------------------AMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAG 610
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV-NDKDVVVWNSM 180
+E G + I + + ++++YS+ G L+ A V + + N +W ++
Sbjct: 611 LVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTI 670
Query: 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
+ +H K L I +KP D LLS
Sbjct: 671 LAACRVH--KKTELGRLAAEKIIAMKPEDSAAYVLLS 705
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/440 (45%), Positives = 288/440 (65%), Gaps = 10/440 (2%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
++T Y+K G++ AR +FD M EK +V WN ++ G+ Q+GLA+EA+ +F +M EP+
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 207
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
T V++LSAC Q GA+ G W+H YI S + +NV++GTALIN+YS+CG + AR VF
Sbjct: 208 SATFVSLLSACAQTGAVSLGSWVHQYI-ISEGLDLNVKLGTALINLYSRCGDVGKAREVF 266
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM---CRIRLKPSDITFIGLLSACAHAG 223
D++ + +V W +MI Y HG+G+ A++LFN+M C P+++TF+ +LSACAHAG
Sbjct: 267 DKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGP--IPNNVTFVAVLSACAHAG 324
Query: 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV---LW 280
LV EGR + M Y + P VEH+ CMV++L RAG ++EAYK + + + LW
Sbjct: 325 LVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALW 384
Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340
+LGAC++H N LG +IA+ LI+ N G +V+LSNIYA G D V+ +R M
Sbjct: 385 TAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRN 444
Query: 341 GVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDI 400
++K+ G S IE+ NK + F GD H ++ EIY LE + K GY P ++ V+H +
Sbjct: 445 NLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQV 504
Query: 401 GEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM 460
E++K+ +L HSEKLAVAFGL+ T +I IVKNLR+C DCH+ FK IS + R+I +
Sbjct: 505 EEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQITV 563
Query: 461 RDRNRFHHFVNGTCSCGDYW 480
RD+ RFHHF NG+CSC DYW
Sbjct: 564 RDKLRFHHFQNGSCSCLDYW 583
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 5/253 (1%)
Query: 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
RSL++ L C A+ +A +LF + D +N +I ++ L + +RRM
Sbjct: 41 RSLLTKLITLACSARA--IAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRM 98
Query: 99 LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
L+ V P+ T +V+ +C + AL G+ +H + S ++ V AL+ YSKCG
Sbjct: 99 LSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVS-GFGLDTYVQAALVTFYSKCGD 157
Query: 159 LKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
++ AR VFDR+ +K +V WNS++ G+ +G +A+Q+F +M +P TF+ LLSA
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217
Query: 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278
CA G V+ G + E ++ V+ ++NL SR G V +A ++ MK E +
Sbjct: 218 CAQTGAVSLGSWVHQYIISE-GLDLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVA 275
Query: 279 LWGTLLGACRLHG 291
W ++ A HG
Sbjct: 276 AWTAMISAYGTHG 288
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE-KV 103
T ++ Y++ G+V AR +FD M+E +V W MI Y HG +A+ LF +M +
Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGP 306
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
PN VT VAVLSAC G +E GR ++ + S + V+ +++M + G L +A
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAY 366
Query: 164 LVFDRVNDKD----VVVWNSMIVGYAMH 187
+++ +W +M+ MH
Sbjct: 367 KFIHQLDATGKATAPALWTAMLGACKMH 394
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/461 (45%), Positives = 295/461 (63%), Gaps = 3/461 (0%)
Query: 22 RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
RG DV A ++F M R+ S ML Y K GE+ +A+ +F +M +D V W+ MI G
Sbjct: 184 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243
Query: 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
A +G NE+ + FR + + PNEV+ VLSAC Q G+ E G+ +H ++E + +
Sbjct: 244 IAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWI 303
Query: 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV-WNSMIVGYAMHGFGKDALQLFNEM 200
V V ALI+MYS+CG++ ARLVF+ + +K +V W SMI G AMHG G++A++LFNEM
Sbjct: 304 -VSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362
Query: 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260
+ P I+FI LL AC+HAGL+ EG +F+ MK Y IEP++EHYGCMV+L R+G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422
Query: 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320
+++AY + M I P +++W TLLGAC HGNI L E++ + L + NSG VLLSN
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNA 482
Query: 321 YAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEI 380
YA G W VA +R M + ++K S +E+ +++F AG+ + E + L+EI
Sbjct: 483 YATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEI 542
Query: 381 NGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRV 439
LK E GY P+ L+D+ E++K++ + HSEKLA+AF L G +I+IVKNLR+
Sbjct: 543 ILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRI 602
Query: 440 CPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
C DCHAV KL SK G +I++RDRNRFH F +G+CSC DYW
Sbjct: 603 CRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/492 (40%), Positives = 309/492 (62%), Gaps = 17/492 (3%)
Query: 1 TVKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAA 60
VK + + V +L+D+Y + G V +++F + ++S+VS T +L K +
Sbjct: 137 AVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERG 196
Query: 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQ 119
R +F +M E++ V W VM+ GY G E L L M+ N VT ++LSAC Q
Sbjct: 197 REVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQ 256
Query: 120 IGALESGRWIHSYI---------ENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
G L GRW+H Y E S + +V VGTAL++MY+KCG++ + VF +
Sbjct: 257 SGNLVVGRWVHVYALKKEMMMGEEASYD---DVMVGTALVDMYAKCGNIDSSMNVFRLMR 313
Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
++VV WN++ G AMHG G+ + +F +M R +KP D+TF +LSAC+H+G+V+EG R
Sbjct: 314 KRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWR 372
Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
F++++ Y +EPKV+HY CMV+LL RAG +EEA L+ +M + P+ V+ G+LLG+C +H
Sbjct: 373 CFHSLRF-YGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVH 431
Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
G + + E+I LI + N+ +L+SN+Y A G D +R ++++G++K PG SS
Sbjct: 432 GKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSS 491
Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQ-IVLHDIGE-KQKQNS 408
I +++ VH F +GD HP++KEIY+ L E+ +++ GYVP +V H G+ ++K+ +
Sbjct: 492 IYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQA 551
Query: 409 LEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHH 468
L HSEKLAV FGL+ T+P T + + KNLR+C DCH+ K++SK R+I++RDRNRFH
Sbjct: 552 LCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQ 611
Query: 469 FVNGTCSCGDYW 480
F G+CSC DYW
Sbjct: 612 FKGGSCSCSDYW 623
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 69/320 (21%)
Query: 11 YVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK 70
Y+S +L YA G++++A+KLF +P + EK
Sbjct: 44 YLSNALFQFYASSGEMVTAQKLFDEIP-----------------------------LSEK 74
Query: 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130
D V W ++ ++++GL ++ LF M ++VE ++V+ V + C ++ L + H
Sbjct: 75 DNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGH 134
Query: 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV---------------- 174
+ + +V+V AL++MY KCG + + + +F+ + +K V
Sbjct: 135 G-VAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGL 193
Query: 175 ---------------VVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSA 218
V W M+ GY GF ++ L+L EM R + +T +LSA
Sbjct: 194 ERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSA 253
Query: 219 CAHAGLVNEGRRFF------NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
CA +G + GR M E A V +V++ ++ G ++ + + M+
Sbjct: 254 CAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMR 313
Query: 273 IEPDSVLWGTLLGACRLHGN 292
+ + V W L +HG
Sbjct: 314 -KRNVVTWNALFSGLAMHGK 332
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 116/306 (37%), Gaps = 76/306 (24%)
Query: 113 VLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRV-- 169
+L C L G+ +H+ + S K + AL Y+ G + A+ +FD +
Sbjct: 12 LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71
Query: 170 NDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA--------- 220
++KD V W +++ ++ +G ++++LF EM R R++ D++ + L CA
Sbjct: 72 SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131
Query: 221 --------------------------HAGLVNEGRRFFNTMKDEYAI------------- 241
GLV+E +R F ++++ +
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191
Query: 242 -------------EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP----DSVLWGTLL 284
E + MV AG E +L+ +M + V ++L
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251
Query: 285 GACRLHGNIALGEKIAEYLISQN--LANSGTY------VLLSNIYAAIGNWDGVARVRTL 336
AC GN+ +G + Y + + + +Y L ++YA GN D V L
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRL 311
Query: 337 MKEKGV 342
M+++ V
Sbjct: 312 MRKRNV 317
>sp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2
SV=1
Length = 608
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 275/431 (63%), Gaps = 2/431 (0%)
Query: 51 YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110
Y K G++ ++ LF+D+ K++V WN MI + Q+GLA + L F EP++ T
Sbjct: 179 YGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATF 238
Query: 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
+AVL +C +G + + IH I N + TAL+++YSK G L+D+ VF +
Sbjct: 239 LAVLRSCEDMGVVRLAQGIHGLIMFG-GFSGNKCITTALLDLYSKLGRLEDSSTVFHEIT 297
Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230
D + W +M+ YA HGFG+DA++ F M + P +TF LL+AC+H+GLV EG+
Sbjct: 298 SPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKH 357
Query: 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH 290
+F TM Y I+P+++HY CMV+LL R+G +++AY L+ +M +EP S +WG LLGACR++
Sbjct: 358 YFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVY 417
Query: 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350
+ LG K AE L + YV+LSNIY+A G W +R+R LMK+KG+ + GCS
Sbjct: 418 KDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSY 477
Query: 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSL 409
IE NK+H+F+ GD HP+S++I L+EI +K+E GY +T+ VLHD+GE K+ +
Sbjct: 478 IEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMI 537
Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
HSEK+A+AFGL+ P I I KNLR+C DCH K IS R+I++RD RFHHF
Sbjct: 538 NQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHF 597
Query: 470 VNGTCSCGDYW 480
++G+CSC DYW
Sbjct: 598 LDGSCSCSDYW 608
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 128/252 (50%), Gaps = 15/252 (5%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--E 104
++ CY + G A LFD+M E+D+V WN +I GY+ G + + RM+ +V
Sbjct: 72 LVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFR 131
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PNEVT ++++SAC G+ E GR IH + + V+V A IN Y K G L +
Sbjct: 132 PNEVTFLSMISACVYGGSKEEGRCIHGLVMKF-GVLEEVKVVNAFINWYGKTGDLTSSCK 190
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+F+ ++ K++V WN+MIV + +G + L FN R+ +P TF+ +L +C G+
Sbjct: 191 LFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGV 250
Query: 225 VN-----EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVL 279
V G F I +++L S+ G++E++ + ++ PDS+
Sbjct: 251 VRLAQGIHGLIMFGGFSGNKCITT------ALLDLYSKLGRLEDSSTVFHEI-TSPDSMA 303
Query: 280 WGTLLGACRLHG 291
W +L A HG
Sbjct: 304 WTAMLAAYATHG 315
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 96 RRMLAEK-----VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150
RR L++ ++ N + +A + +C I E R +H + S + + +G L+
Sbjct: 18 RRFLSQSSFVHSLDANVSSLIAAVKSCVSI---ELCRLLHCKVVKSVSYRHGF-IGDQLV 73
Query: 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM--CRIRLKPS 208
Y + G A +FD + ++D+V WNS+I GY+ G+ ++ + M + +P+
Sbjct: 74 GCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPN 133
Query: 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268
++TF+ ++SAC + G EG R + + ++ + +V+ +N + G + + KL
Sbjct: 134 EVTFLSMISACVYGGSKEEG-RCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLF 192
Query: 269 MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303
D+ I+ + V W T++ +H L EK Y
Sbjct: 193 EDLSIK-NLVSWNTMI---VIHLQNGLAEKGLAYF 223
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/436 (44%), Positives = 285/436 (65%), Gaps = 3/436 (0%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
+ ++ +AK GE A +FD+M D + WN +I G+AQ+ ++ AL LF+RM
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
+ T +VL AC + LE G H +I ++ + AL++MY KCGSL+DA
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQ---DLILNNALVDMYCKCGSLEDALR 314
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
VF+++ ++DV+ W++MI G A +G+ ++AL+LF M KP+ IT +G+L AC+HAGL
Sbjct: 315 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGL 374
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
+ +G +F +MK Y I+P EHYGCM++LL +AG++++A KL+ +M+ EPD+V W TLL
Sbjct: 375 LEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
Query: 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344
GACR+ N+ L E A+ +I+ + ++GTY LLSNIYA WD V +RT M+++G++K
Sbjct: 435 GACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKK 494
Query: 345 EPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQ 404
EPGCS IE++ ++H F+ GD HP+ E+ L ++ L GYVP+T VL D+ +Q
Sbjct: 495 EPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQ 554
Query: 405 KQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRN 464
++SL HSEKLA+AFGL++ I+I KNLR+C DCH KL SK R I++RD
Sbjct: 555 MEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPI 614
Query: 465 RFHHFVNGTCSCGDYW 480
R+HHF +G CSCGDYW
Sbjct: 615 RYHHFQDGKCSCGDYW 630
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 147/318 (46%), Gaps = 29/318 (9%)
Query: 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103
+ ++ Y K + A LFD M +++V+ W MI Y++ + +AL L ML + V
Sbjct: 99 VNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNV 158
Query: 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163
PN T +VL +C + R +H I ++ +V V +ALI++++K G +DA
Sbjct: 159 RPNVYTYSSVLRSCN---GMSDVRMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDAL 214
Query: 164 LVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223
VFD + D +VWNS+I G+A + AL+LF M R T +L AC
Sbjct: 215 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLA 274
Query: 224 LVNEGRRFFNTMKDEYAI---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW 280
L+ G M+ I + + +V++ + G +E+A ++ MK E D + W
Sbjct: 275 LLELG------MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITW 327
Query: 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGT---YVLLSNIYAAIGNW----DGVARV 333
T++ +G K+ E + +SGT Y+ + + A + DG
Sbjct: 328 STMISGLAQNGYSQEALKLFE-----RMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382
Query: 334 RTLMKEKG---VQKEPGC 348
R++ K G V++ GC
Sbjct: 383 RSMKKLYGIDPVREHYGC 400
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Query: 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRM 98
+ L+ ++ Y K G + A +F+ M+E+DV+ W+ MI G AQ+G + EAL LF RM
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350
Query: 99 LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158
+ +PN +T V VL AC G LE G + ++ I + +I++ K G
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410
Query: 159 LKDA-RLVFDRVNDKDVVVWNSMI 181
L DA +L+ + + D V W +++
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLL 434
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 178/374 (47%), Positives = 261/374 (69%), Gaps = 1/374 (0%)
Query: 12 VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
V ++++Y + G++++A+K+F MP R V+ T M+ CY++ G + A LF D++ KD
Sbjct: 160 VGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKD 219
Query: 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
VCW MIDG ++ N+AL LFR M E V NE TAV VLSAC +GALE GRW+HS
Sbjct: 220 TVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHS 279
Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
++EN R ++++ VG ALINMYS+CG + +AR VF + DKDV+ +N+MI G AMHG
Sbjct: 280 FVENQR-MELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASV 338
Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251
+A+ F +M +P+ +T + LL+AC+H GL++ G FN+MK + +EP++EHYGC+
Sbjct: 339 EAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCI 398
Query: 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311
V+LL R G++EEAY+ + ++ IEPD ++ GTLL AC++HGN+ LGEKIA+ L +S
Sbjct: 399 VDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDS 458
Query: 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSK 371
GTYVLLSN+YA+ G W +R M++ G++KEPGCS+IE+ N++HEFL GD+ HP +
Sbjct: 459 GTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKE 518
Query: 372 EIYMMLEEINGWLK 385
IY L+E+N L+
Sbjct: 519 AIYQRLQELNRILR 532
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 41/280 (14%)
Query: 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122
+F + +V + MIDG+ G + + + L+ RM+ V P+ +VL AC
Sbjct: 83 VFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD---- 138
Query: 123 LESGRWIHSYI-----ENSRNIKVNVQ-------------------------VGTALINM 152
L+ R IH+ + +SR++ + + T +IN
Sbjct: 139 LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINC 198
Query: 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212
YS+CG +K+A +F V KD V W +MI G + AL+LF EM + ++ T
Sbjct: 199 YSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTA 258
Query: 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272
+ +LSAC+ G + G R+ ++ + +E ++N+ SR G + EA ++ M+
Sbjct: 259 VCVLSACSDLGALELG-RWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMR 317
Query: 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312
+ D + + T++ +HG A E I E+ +++ N G
Sbjct: 318 -DKDVISYNTMISGLAMHG--ASVEAINEF---RDMVNRG 351
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/438 (43%), Positives = 280/438 (63%), Gaps = 9/438 (2%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
+L Y K G+++AA+ FD + D V W MI G ++G A +F +M V P+
Sbjct: 558 ILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPD 617
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDA 162
E T + A + ALE GR IH+ +K+N VGT+L++MY+KCGS+ DA
Sbjct: 618 EFTIATLAKASSCLTALEQGRQIHA-----NALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672
Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
+F R+ ++ WN+M+VG A HG GK+ LQLF +M + +KP +TFIG+LSAC+H+
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
GLV+E + +M +Y I+P++EHY C+ + L RAG V++A L+ M +E + ++ T
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
LL ACR+ G+ G+++A L+ +S YVLLSN+YAA WD + RT+MK V
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
+K+PG S IE+ NK+H F+ D + +++ IY ++++ +K EGYVP+T L D+ E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912
Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
++K+ +L HSEKLAVAFGL+ST P T I+++KNLRVC DCH K I+K R+I++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
Query: 463 RNRFHHFVNGTCSCGDYW 480
NRFH F +G CSCGDYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 11/263 (4%)
Query: 46 TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
+++ Y K + AR +FD+M E+D++ WN +I G AQ+GL EA+ LF ++L ++P
Sbjct: 355 SLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKP 414
Query: 106 NEVTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
++ T +VL A + L + +H + N+ + V TALI+ YS+ +K+A +
Sbjct: 415 DQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSF-VSTALIDAYSRNRCMKEAEI 473
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+F+R N D+V WN+M+ GY G L+LF M + + D T + C
Sbjct: 474 LFERHN-FDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFA 532
Query: 225 VNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
+N+G++ +K Y ++ V ++++ + G + A + D PD V W T+
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAA-QFAFDSIPVPDDVAWTTM 589
Query: 284 LGACRLHGNIALGEKIAEYLISQ 306
+ C +G E+ A ++ SQ
Sbjct: 590 ISGCIENGE----EERAFHVFSQ 608
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 21/279 (7%)
Query: 33 FATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA---- 88
F P+R L++ +++ Y+K G + AR +FD M ++D+V WN ++ YAQ
Sbjct: 68 FEENPERFLIN--NLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVEN 125
Query: 89 -NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ--- 144
+A +LFR + + V + +T +L C G + + H Y K+ +
Sbjct: 126 IQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYA-----CKIGLDGDE 180
Query: 145 -VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203
V AL+N+Y K G +K+ +++F+ + +DVV+WN M+ Y GF ++A+ L +
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240
Query: 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263
L P++IT L + + F N E + G L +GQ
Sbjct: 241 GLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYL--HSGQYSA 298
Query: 264 AYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKI 299
K DM +E D V + +L ++ALG+++
Sbjct: 299 LLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQV 337
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 39/256 (15%)
Query: 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQG------- 55
K LD D +V+ +LV++Y + G V + LF MP R +V ML Y + G
Sbjct: 173 KIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 232
Query: 56 -------------EVAA---ARVLFDDMEE---------------KDVVCWNVMIDGYAQ 84
E+ AR+ DD + +++ N + Y
Sbjct: 233 LSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLH 292
Query: 85 HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ 144
G + L F M+ VE ++VT + +L+ ++ +L G+ +H + + + +
Sbjct: 293 SGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC-MALKLGLDLMLT 351
Query: 145 VGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204
V +LINMY K AR VFD ++++D++ WNS+I G A +G +A+ LF ++ R
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411
Query: 205 LKPSDITFIGLLSACA 220
LKP T +L A +
Sbjct: 412 LKPDQYTMTSVLKAAS 427
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
A+ S+ +G R I ++ EN +N LI+MYSKCGSL AR VFD++ D
Sbjct: 49 AITSSDLMLGKCTHAR-ILTFEENPERFLIN-----NLISMYSKCGSLTYARRVFDKMPD 102
Query: 172 KDVVVWNSMIVGYAMHGFG-----KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
+D+V WNS++ YA + A LF + + + S +T +L C H+G V
Sbjct: 103 RDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVW 162
Query: 227 EGRRFFNTMKDEYAIEPKVEH----YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
F YA + ++ G +VN+ + G+V+E L +M D VLW
Sbjct: 163 ASESFHG-----YACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNL 216
Query: 283 LLGA 286
+L A
Sbjct: 217 MLKA 220
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T+++ YAK G + A LF +E ++ WN M+ G AQHG E L LF++M + ++
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIK 716
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
P++VT + VLSAC G + + IK ++ + L + + G +K A
Sbjct: 717 PDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAEN 776
Query: 165 VFDRVN-DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217
+ + ++ + ++ +++ + G + ++ ++ + L+P D + LLS
Sbjct: 777 LIESMSMEASASMYRTLLAACRVQGDTETGKRVATKL--LELEPLDSSAYVLLS 828
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/465 (40%), Positives = 295/465 (63%), Gaps = 1/465 (0%)
Query: 16 LVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCW 75
L++ Y R D+ A LF +MP+R+ S +T++ Y GE+ A+ LF+ M EK+VV W
Sbjct: 202 LINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSW 261
Query: 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135
+I+G++Q G A+ + ML + ++PNE T AVLSAC + GAL SG IH YI +
Sbjct: 262 TTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILD 321
Query: 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQ 195
+ IK++ +GTAL++MY+KCG L A VF +N KD++ W +MI G+A+HG A+Q
Sbjct: 322 N-GIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQ 380
Query: 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255
F +M KP ++ F+ +L+AC ++ V+ G FF++M+ +YAIEP ++HY +V+LL
Sbjct: 381 CFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLL 440
Query: 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315
RAG++ EA++LV +M I PD W L AC+ H E +++ L+ + G+Y+
Sbjct: 441 GRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYI 500
Query: 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYM 375
L +A+ GN V + R ++++ ++ G S IEL ++++F AGD H ++EI +
Sbjct: 501 FLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGL 560
Query: 376 MLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVK 435
L+EI +GY P +HDI E++K+N +HSEKLA+ G + T PGT+I+I+K
Sbjct: 561 KLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIK 620
Query: 436 NLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
NLR+C DCH++ K +SK + R I++RD +FHHF +G CSCGDYW
Sbjct: 621 NLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 146/329 (44%), Gaps = 21/329 (6%)
Query: 25 DVLSAEKLFATMPQRSLVS---LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDG 81
D S + A + +R ++S +++C + + +F + EE++ N +I G
Sbjct: 41 DTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALIRG 100
Query: 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV 141
++ ++ F ML V+P+ +T VL + ++G GR +H+ + +
Sbjct: 101 LTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKN-FVDC 159
Query: 142 NVQVGTALINMYSKCGSLKDARLVF----DRVNDKDVVVWNSMIVGYAMHGFGKDALQLF 197
+ V +L++MY+K G LK A VF DR+ + +++WN +I GY A LF
Sbjct: 160 DSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLF 219
Query: 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257
M + + ++ L+ +G +N ++ F M E V + ++N S+
Sbjct: 220 RSMP----ERNSGSWSTLIKGYVDSGELNRAKQLFELMP-----EKNVVSWTTLINGFSQ 270
Query: 258 AGQVEEA---YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA-NSGT 313
G E A Y +++ ++P+ +L AC G + G +I Y++ + +
Sbjct: 271 TGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAI 330
Query: 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
L ++YA G D A V + M K +
Sbjct: 331 GTALVDMYAKCGELDCAATVFSNMNHKDI 359
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 39/201 (19%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
D + T+LVD+YA+ G++ A +F+ M + ++S
Sbjct: 327 DRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS------------------------- 361
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128
W MI G+A HG ++A+ FR+M+ +P+EV +AVL+AC ++ G
Sbjct: 362 ------WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLN 415
Query: 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVGYAMH 187
+ I+ ++ ++++ + G L +A LV + + D+ W ++ H
Sbjct: 416 FFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAH 475
Query: 188 -------GFGKDALQLFNEMC 201
++ L+L E+C
Sbjct: 476 KGYRRAESVSQNLLELDPELC 496
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/435 (42%), Positives = 277/435 (63%), Gaps = 1/435 (0%)
Query: 46 TMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105
++ Y K G+V A+ +FDD +++ ++D Y Q EAL LF +M ++V P
Sbjct: 277 ALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPP 336
Query: 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLV 165
NE T +L++ ++ L+ G +H + S + +V VG AL+NMY+K GS++DAR
Sbjct: 337 NEYTFAILLNSIAELSLLKQGDLLHGLVLKS-GYRNHVMVGNALVNMYAKSGSIEDARKA 395
Query: 166 FDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225
F + +D+V WN+MI G + HG G++AL+ F+ M P+ ITFIG+L AC+H G V
Sbjct: 396 FSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFV 455
Query: 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285
+G +FN + ++ ++P ++HY C+V LLS+AG ++A + IE D V W TLL
Sbjct: 456 EQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLN 515
Query: 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345
AC + N LG+K+AEY I + +SG YVLLSNI+A W+GVA+VR+LM +GV+KE
Sbjct: 516 ACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKE 575
Query: 346 PGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK 405
PG S I + N+ H FLA D +HP+ IY ++E+ +K GY P HD+ E+Q+
Sbjct: 576 PGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQR 635
Query: 406 QNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNR 465
+++L HSEKLAVA+GLI T + + + KN+R+C DCH+ KLISK + R I++RD NR
Sbjct: 636 EDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNR 695
Query: 466 FHHFVNGTCSCGDYW 480
FHHF++G CSC DYW
Sbjct: 696 FHHFLDGQCSCCDYW 710
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 16/309 (5%)
Query: 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102
+L M + + GE A RVL DD+ D+ ++ + GY + G E L + R+ E
Sbjct: 176 TLVYMYSLCSGNGE--AIRVL-DDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANED 232
Query: 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162
N +T ++ L + L +HS + V+ ALINMY KCG + A
Sbjct: 233 FVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRF-GFNAEVEACGALINMYGKCGKVLYA 291
Query: 163 RLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222
+ VFD + +++ + +++ Y ++AL LF++M + P++ TF LL++ A
Sbjct: 292 QRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAEL 351
Query: 223 GLVNEGRRFFN-TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWG 281
L+ +G +K Y V + +VN+ +++G +E+A K M D V W
Sbjct: 352 SLLKQGDLLHGLVLKSGYRNHVMVGN--ALVNMYAKSGSIEDARKAFSGMTFR-DIVTWN 408
Query: 282 TLLGACRLHGNIALG----EKIAEYLISQNLANSGTYVLLSNIYAAIGNWD-GVARVRTL 336
T++ C HG LG E + + + N T++ + + IG + G+ L
Sbjct: 409 TMISGCSHHG---LGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQL 465
Query: 337 MKEKGVQKE 345
MK+ VQ +
Sbjct: 466 MKKFDVQPD 474
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 5/254 (1%)
Query: 20 YARGGDVLSAEKLFATMPQRS--LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNV 77
Y R G+ + A + R+ + +++ Y K E AR LFD M E++VV W
Sbjct: 46 YLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCA 105
Query: 78 MIDGYAQHGLANEALVLFRRM-LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136
M+ GY G E L LF+ M + + PNE A V +C G +E G+ H
Sbjct: 106 MMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKY 165
Query: 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL 196
I V L+ MYS C +A V D + D+ V++S + GY G K+ L +
Sbjct: 166 GLISHEF-VRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDV 224
Query: 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256
+ +++T++ L ++ +N + + M + +VE G ++N+
Sbjct: 225 LRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMV-RFGFNAEVEACGALINMYG 283
Query: 257 RAGQVEEAYKLVMD 270
+ G+V A ++ D
Sbjct: 284 KCGKVLYAQRVFDD 297
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 113 VLSACGQIGALESGRWIHSY--IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170
+L C L G IH++ + N + + +LIN+Y KC AR +FD +
Sbjct: 37 LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96
Query: 171 DKDVVVWNSMIVGYAMHGFGKDALQLFNEM-CRIRLKPSDITFIGLLSACAHAGLVNEGR 229
+++VV W +M+ GY GF + L+LF M +P++ + +C+++G + EG+
Sbjct: 97 ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGK 156
Query: 230 RF 231
+F
Sbjct: 157 QF 158
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/431 (42%), Positives = 282/431 (65%), Gaps = 9/431 (2%)
Query: 53 KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA-EKVEPNEVTAV 111
K GE A+ + + +++V+ WN+MI GY ++ EAL + ML+ ++PN+ +
Sbjct: 110 KIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFA 169
Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
+ L+AC ++G L +W+HS + +S I++N + +AL+++Y+KCG + +R VF V
Sbjct: 170 SSLAACARLGDLHHAKWVHSLMIDS-GIELNAILSSALVDVYAKCGDIGTSREVFYSVKR 228
Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
DV +WN+MI G+A HG +A+++F+EM + P ITF+GLL+ C+H GL+ EG+ +
Sbjct: 229 NDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEY 288
Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291
F M ++I+PK+EHYG MV+LL RAG+V+EAY+L+ M IEPD V+W +LL + R +
Sbjct: 289 FGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYK 348
Query: 292 NIALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349
N LGE + QNL A SG YVLLSNIY++ W+ +VR LM ++G++K G S
Sbjct: 349 NPELGE-----IAIQNLSKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKS 403
Query: 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL 409
+E +H F AGD H ++K IY +LE + K++G+V T +VL D+ E++K+ +L
Sbjct: 404 WLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENL 463
Query: 410 EVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHF 469
HSEKLA+A+ ++ + PGT I+I KN+R+C DCH K +SK R I+MRDR RFH F
Sbjct: 464 NYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRF 523
Query: 470 VNGTCSCGDYW 480
+G CSC DYW
Sbjct: 524 EDGLCSCRDYW 534
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 35/188 (18%)
Query: 12 VSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD 71
+S++LVD+YA+ GD+ ++ ++F ++ + + M+T +A G
Sbjct: 202 LSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHG---------------- 245
Query: 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
LA EA+ +F M AE V P+ +T + +L+ C G LE G+
Sbjct: 246 ---------------LATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFG 290
Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDA-RLVFDRVNDKDVVVWNSMIVG---YAMH 187
+ +I+ ++ A++++ + G +K+A L+ + DVV+W S++ Y
Sbjct: 291 LMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNP 350
Query: 188 GFGKDALQ 195
G+ A+Q
Sbjct: 351 ELGEIAIQ 358
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/475 (40%), Positives = 279/475 (58%), Gaps = 33/475 (6%)
Query: 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDD 66
D L+V SLVD+YA+ AE +F ++PQ
Sbjct: 383 DSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ---------------------------- 414
Query: 67 MEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126
+ V W +I GY Q GL L LF +M + ++ T VL A +L G
Sbjct: 415 ---RTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471
Query: 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186
+ +H++I S N++ NV G+ L++MY+KCGS+KDA VF+ + D++ V WN++I +A
Sbjct: 472 KQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHAD 530
Query: 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246
+G G+ A+ F +M L+P ++ +G+L+AC+H G V +G +F M Y I PK +
Sbjct: 531 NGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKK 590
Query: 247 HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS- 305
HY CM++LL R G+ EA KL+ +M EPD ++W ++L ACR+H N +L E+ AE L S
Sbjct: 591 HYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSM 650
Query: 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDL 365
+ L ++ YV +SNIYAA G W+ V V+ M+E+G++K P S +E+++K+H F + D
Sbjct: 651 EKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQ 710
Query: 366 RHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
HP EI + E+ ++ EGY P T V+ D+ E+ K SL+ HSE+LAVAF LIST
Sbjct: 711 THPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIST 770
Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
G I ++KNLR C DCHA KLISK R+I +RD +RFHHF G CSCGDYW
Sbjct: 771 PEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 3/220 (1%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+K D D S +V+ R G V +A K++ MP ++ VS TM++ + K G+V++AR
Sbjct: 40 IKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSAR 99
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK--VEPNEVTAVAVLSACGQ 119
LFD M ++ VV W +++ YA++ +EA LFR+M P+ VT +L C
Sbjct: 100 DLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCND 159
Query: 120 IGALESGRWIHSY-IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178
+ +H++ ++ + + V L+ Y + L A ++F+ + +KD V +N
Sbjct: 160 AVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFN 219
Query: 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218
++I GY G +++ LF +M + +PSD TF G+L A
Sbjct: 220 TLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 10/253 (3%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
+L Y+K V R+LFD+M E D V +NV+I Y+Q +L FR M +
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350
Query: 107 EVTAVAVLSACGQIGALESGRWIH--SYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
+LS + +L+ GR +H + + + +I + VG +L++MY+KC ++A L
Sbjct: 351 NFPFATMLSIAANLSSLQMGRQLHCQALLATADSI---LHVGNSLVDMYAKCEMFEEAEL 407
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+F + + V W ++I GY G L+LF +M L+ TF +L A A
Sbjct: 408 IFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467
Query: 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
+ G++ + +E G +V++ ++ G +++A ++ +M + ++V W L+
Sbjct: 468 LLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALI 525
Query: 285 GACRLHGNIALGE 297
A H + GE
Sbjct: 526 SA---HADNGDGE 535
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 145/328 (44%), Gaps = 35/328 (10%)
Query: 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106
+L Y + + A VLF+++ EKD V +N +I GY + GL E++ LF +M +P+
Sbjct: 190 LLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPS 249
Query: 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166
+ T VL A + G+ +H+ + + + VG +++ YSK + + R++F
Sbjct: 250 DFTFSGVLKAVVGLHDFALGQQLHA-LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLF 308
Query: 167 DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226
D + + D V +N +I Y+ + +L F EM + + F +LS A+ +
Sbjct: 309 DEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQ 368
Query: 227 EGRRFF---------------NTMKDEYAIEPKVEHYGCMVNLLSR----------AGQV 261
GR+ N++ D YA E + L + +G V
Sbjct: 369 MGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYV 428
Query: 262 EE-----AYKLVMDMK---IEPDSVLWGTLLGACRLHGNIALGEKIAEYLI-SQNLANSG 312
++ KL M+ + D + T+L A ++ LG+++ ++I S NL N
Sbjct: 429 QKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488
Query: 313 TYVLLSNIYAAIGNWDGVARVRTLMKEK 340
+ L ++YA G+ +V M ++
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMPDR 516
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/438 (42%), Positives = 280/438 (63%), Gaps = 3/438 (0%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
+++L YAK G++ AR +F+ + E+DVV +I GYAQ GL EAL +F R+ +E +
Sbjct: 192 SSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMS 251
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PN VT ++L+A + L+ G+ H ++ R + + +LI+MYSKCG+L AR
Sbjct: 252 PNYVTYASLLTALSGLALLDHGKQAHCHVLR-RELPFYAVLQNSLIDMYSKCGNLSYARR 310
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC-RIRLKPSDITFIGLLSACAHAG 223
+FD + ++ + WN+M+VGY+ HG G++ L+LF M R+KP +T + +LS C+H
Sbjct: 311 LFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGR 370
Query: 224 LVNEGRRFFNTM-KDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282
+ + G F+ M EY +P EHYGC+V++L RAG+++EA++ + M +P + + G+
Sbjct: 371 MEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGS 430
Query: 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342
LLGACR+H ++ +GE + LI N+G YV+LSN+YA+ G W V VR +M +K V
Sbjct: 431 LLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAV 490
Query: 343 QKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGE 402
KEPG S I+ +H F A D HP+ +E+ ++EI+ +K GYVP VL+D+ E
Sbjct: 491 TKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDE 550
Query: 403 KQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRD 462
+QK+ L HSEKLA+ FGLI+T G I++ KNLR+C DCH K+ SK R++ +RD
Sbjct: 551 EQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRD 610
Query: 463 RNRFHHFVNGTCSCGDYW 480
+NRFH V+G CSCGDYW
Sbjct: 611 KNRFHQIVDGICSCGDYW 628
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 145/258 (56%), Gaps = 8/258 (3%)
Query: 45 TTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVE 104
T +L Y K + AR + D+M EK+VV W MI Y+Q G ++EAL +F M+ +
Sbjct: 91 TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGK 150
Query: 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164
PNE T VL++C + L G+ IH I N ++ VG++L++MY+K G +K+AR
Sbjct: 151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKW-NYDSHIFVGSSLLDMYAKAGQIKEARE 209
Query: 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224
+F+ + ++DVV ++I GYA G ++AL++F+ + + P+ +T+ LL+A + L
Sbjct: 210 IFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLAL 269
Query: 225 VNEGRRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283
++ G++ + ++ E +++ ++++ S+ G + A +L +M E ++ W +
Sbjct: 270 LDHGKQAHCHVLRRELPFYAVLQN--SLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAM 326
Query: 284 LGACRLHGNIALGEKIAE 301
L HG LG ++ E
Sbjct: 327 LVGYSKHG---LGREVLE 341
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171
A+L+AC AL G+ +H+++ +R + + T L+ Y KC L+DAR V D + +
Sbjct: 57 ALLNACLDKRALRDGQRVHAHMIKTRYLPATY-LRTRLLIFYGKCDCLEDARKVLDEMPE 115
Query: 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231
K+VV W +MI Y+ G +AL +F EM R KP++ TF +L++C A + G++
Sbjct: 116 KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI 175
Query: 232 FNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267
+ ++ + + ++++ ++AGQ++EA ++
Sbjct: 176 HGLIV-KWNYDSHIFVGSSLLDMYAKAGQIKEAREI 210
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 293/475 (61%), Gaps = 4/475 (0%)
Query: 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDME 68
D V +SLVD+YA+ G + SA+ +F ++ ++ +S T M++ YAK G A LF +
Sbjct: 139 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 198
Query: 69 EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGR 127
K++ W +I G+ Q G EA +F M E+V+ + + +++ AC + A +GR
Sbjct: 199 VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGR 258
Query: 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187
+H + + V + ALI+MY+KC + A+ +F R+ +DVV W S+IVG A H
Sbjct: 259 QVHGLV-IALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQH 317
Query: 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247
G + AL L+++M +KP+++TF+GL+ AC+H G V +GR F +M +Y I P ++H
Sbjct: 318 GQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQH 377
Query: 248 YGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ- 306
Y C+++LL R+G ++EA L+ M PD W LL AC+ G +G +IA++L+S
Sbjct: 378 YTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSF 437
Query: 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLR 366
L + TY+LLSNIYA+ W V+ R + E V+K+PG SS+E+ + F AG+
Sbjct: 438 KLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETS 497
Query: 367 HPKSKEIYMMLEEINGWLKAE-GYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLIST 425
HP ++I+ +L+++ ++ GYVP T +LHD+ E++K+ L HSE+ AVA+GL+
Sbjct: 498 HPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKA 557
Query: 426 QPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480
PGT I+IVKNLRVC DCH V K IS+ T R+I++RD R+HHF G CSC D+W
Sbjct: 558 VPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 17 VDLYARGGDVLSAEKLFATMPQRSLVSL----TTMLTCYAKQGEVAAARVLFDDMEEKDV 72
+ L AR + +A+ L A + + +V T++ Y K G + A +FD+M +D
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 73 VCWNVMIDGYAQHGLANEAL-VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131
+ W ++ Q L+ + L V + + P++ A++ AC +G+++ GR +H
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191
+ S V V ++L++MY+KCG L A+ VFD + K+ + W +M+ GYA G +
Sbjct: 130 HFIVSEYANDEV-VKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKE 188
Query: 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238
+AL+LF RI + ++ L+S +G E F M+ E
Sbjct: 189 EALELF----RILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 35/239 (14%)
Query: 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAAR 61
+ D +++S +L+D+YA+ DV++A+ +F+ M R +VS T+++ A+ G+ A
Sbjct: 265 IALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKAL 324
Query: 62 VLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121
L+DDM HG V+PNEVT V ++ AC +G
Sbjct: 325 ALYDDM---------------VSHG----------------VKPNEVTFVGLIYACSHVG 353
Query: 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVNDKDVVVWNSM 180
+E GR + + I+ ++Q T L+++ + G L +A L+ D W ++
Sbjct: 354 FVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAAL 413
Query: 181 IVGYAMHGFGKDALQLFNEM-CRIRLK-PSDITFIGLLSACAHA-GLVNEGRRFFNTMK 236
+ G G+ +++ + + +LK PS + + A A G V+E RR M+
Sbjct: 414 LSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEME 472
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 114 LSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCGSLKDARLVFDRV 169
L C + L + + +H++I +K+ + + L+N+Y KCG+ A VFD +
Sbjct: 10 LQLCARNRTLTTAKALHAHI-----VKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEM 64
Query: 170 NDKDVVVWNSMIVGYAMHGF-GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228
+D + W S++ GK + L+P D F L+ ACA+ G ++ G
Sbjct: 65 PHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHG 124
Query: 229 RRFF-NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284
R+ + + EYA + V+ +V++ ++ G + A K V D +++ W ++
Sbjct: 125 RQVHCHFIVSEYANDEVVK--SSLVDMYAKCGLLNSA-KAVFDSIRVKNTISWTAMV 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,570,256
Number of Sequences: 539616
Number of extensions: 6840535
Number of successful extensions: 22748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 16436
Number of HSP's gapped (non-prelim): 2224
length of query: 480
length of database: 191,569,459
effective HSP length: 121
effective length of query: 359
effective length of database: 126,275,923
effective search space: 45333056357
effective search space used: 45333056357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)