Query 038395
Match_columns 480
No_of_seqs 654 out of 3435
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:33:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 4E-108 8E-113 853.4 53.2 478 2-480 150-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-101 2E-106 823.3 51.3 473 2-478 315-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 7.5E-60 1.6E-64 502.4 33.7 406 43-456 224-654 (857)
4 PLN03081 pentatricopeptide (PP 100.0 8.3E-59 1.8E-63 483.4 37.0 450 5-472 118-580 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.9E-57 6.3E-62 475.4 38.2 445 7-459 434-912 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 5.9E-54 1.3E-58 450.6 41.7 379 4-396 399-792 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 3.6E-31 7.9E-36 205.6 6.2 106 347-470 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-21 3.3E-26 211.4 37.6 325 10-342 533-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.8E-21 8.2E-26 208.3 39.1 325 7-338 564-898 (899)
10 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.3E-25 183.7 32.1 294 48-348 42-355 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.2E-19 2.6E-24 177.4 31.4 285 17-306 42-347 (389)
12 PRK15174 Vi polysaccharide exp 99.8 5E-17 1.1E-21 167.3 36.3 318 15-341 47-382 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-16 4.8E-21 162.9 38.9 250 86-340 308-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.8 9.2E-18 2E-22 158.7 22.0 322 10-340 116-485 (966)
15 PRK15174 Vi polysaccharide exp 99.8 9.3E-16 2E-20 158.0 35.0 316 20-341 15-348 (656)
16 KOG4626 O-linked N-acetylgluco 99.8 1.2E-16 2.5E-21 151.3 24.1 301 22-331 196-510 (966)
17 PRK11447 cellulose synthase su 99.8 2.9E-15 6.3E-20 164.6 37.1 369 16-394 275-748 (1157)
18 PRK10049 pgaA outer membrane p 99.8 1.9E-14 4.2E-19 151.4 40.2 331 8-341 47-457 (765)
19 PRK11447 cellulose synthase su 99.7 1.3E-14 2.9E-19 159.5 39.3 320 12-340 237-666 (1157)
20 PRK10049 pgaA outer membrane p 99.7 9.2E-14 2E-18 146.3 40.8 325 9-341 14-423 (765)
21 TIGR00990 3a0801s09 mitochondr 99.7 3.9E-14 8.4E-19 146.3 36.1 317 13-341 130-497 (615)
22 PRK09782 bacteriophage N4 rece 99.7 1.1E-12 2.4E-17 138.8 40.1 227 106-341 476-707 (987)
23 PRK09782 bacteriophage N4 rece 99.6 1.5E-12 3.2E-17 137.9 35.7 324 9-343 375-743 (987)
24 PRK14574 hmsH outer membrane p 99.6 7E-12 1.5E-16 130.2 39.1 322 15-340 73-479 (822)
25 PF13429 TPR_15: Tetratricopep 99.6 3.9E-15 8.5E-20 138.3 11.4 256 77-338 13-275 (280)
26 PRK14574 hmsH outer membrane p 99.6 1.8E-11 4E-16 127.1 38.8 324 17-341 109-514 (822)
27 KOG2076 RNA polymerase III tra 99.6 5.4E-12 1.2E-16 125.3 31.8 318 18-338 147-510 (895)
28 KOG4422 Uncharacterized conser 99.5 2.3E-11 4.9E-16 111.2 28.3 323 10-341 116-552 (625)
29 PRK10747 putative protoheme IX 99.5 2.6E-11 5.6E-16 118.0 31.2 275 54-339 97-389 (398)
30 PRK10747 putative protoheme IX 99.5 4.5E-11 9.8E-16 116.4 32.8 276 23-306 97-390 (398)
31 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.5E-15 114.2 33.0 277 53-337 96-396 (409)
32 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.3E-18 128.7 10.5 250 17-304 15-275 (280)
33 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.3E-16 119.6 23.3 247 86-340 333-586 (638)
34 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.7E-16 119.1 22.1 272 57-340 335-620 (638)
35 TIGR00540 hemY_coli hemY prote 99.4 2.8E-10 6.1E-15 111.4 30.5 277 22-305 96-398 (409)
36 KOG1155 Anaphase-promoting com 99.4 1.4E-09 3.1E-14 100.7 31.5 328 8-339 162-494 (559)
37 KOG4318 Bicoid mRNA stability 99.4 1E-11 2.2E-16 122.8 18.3 265 93-398 11-276 (1088)
38 KOG2003 TPR repeat-containing 99.4 6.9E-10 1.5E-14 102.3 28.0 203 120-327 503-710 (840)
39 KOG4422 Uncharacterized conser 99.4 2.8E-09 6.1E-14 97.8 30.4 331 8-343 205-593 (625)
40 KOG1915 Cell cycle control pro 99.4 2.7E-09 5.9E-14 99.1 30.4 294 52-350 152-510 (677)
41 PF13041 PPR_2: PPR repeat fam 99.4 1.5E-12 3.2E-17 85.8 6.8 50 70-119 1-50 (50)
42 TIGR02521 type_IV_pilW type IV 99.4 3.5E-10 7.6E-15 101.7 24.0 199 141-340 29-232 (234)
43 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.8E-17 85.0 6.8 50 172-221 1-50 (50)
44 COG2956 Predicted N-acetylgluc 99.3 1.5E-09 3.3E-14 96.2 25.6 211 24-236 49-276 (389)
45 KOG0495 HAT repeat protein [RN 99.3 1.1E-08 2.3E-13 98.8 32.0 300 43-353 586-891 (913)
46 COG3071 HemY Uncharacterized e 99.3 8.7E-09 1.9E-13 94.1 28.6 278 54-340 97-390 (400)
47 KOG0495 HAT repeat protein [RN 99.3 8.4E-09 1.8E-13 99.5 29.8 303 23-333 389-707 (913)
48 KOG2002 TPR-containing nuclear 99.3 6.2E-09 1.4E-13 104.7 30.1 331 8-342 268-677 (1018)
49 COG3071 HemY Uncharacterized e 99.3 2.2E-08 4.8E-13 91.6 30.6 275 23-305 97-389 (400)
50 KOG2003 TPR repeat-containing 99.3 2.9E-09 6.2E-14 98.3 24.5 184 154-340 501-689 (840)
51 KOG0547 Translocase of outer m 99.3 9.3E-09 2E-13 96.0 27.7 211 121-338 340-564 (606)
52 TIGR02521 type_IV_pilW type IV 99.3 2.4E-09 5.1E-14 96.3 23.6 191 74-270 33-228 (234)
53 COG2956 Predicted N-acetylgluc 99.3 5.4E-09 1.2E-13 92.7 24.0 288 54-347 48-354 (389)
54 PRK12370 invasion protein regu 99.3 3.6E-09 7.7E-14 107.7 26.4 260 71-341 255-536 (553)
55 KOG1155 Anaphase-promoting com 99.3 7E-09 1.5E-13 96.2 25.2 157 108-270 331-491 (559)
56 KOG4318 Bicoid mRNA stability 99.2 2E-09 4.4E-14 107.0 21.9 241 3-260 18-286 (1088)
57 KOG1840 Kinesin light chain [C 99.2 6E-09 1.3E-13 101.6 24.3 190 149-338 247-477 (508)
58 KOG2002 TPR-containing nuclear 99.2 2.7E-08 5.8E-13 100.3 29.0 314 19-337 208-556 (1018)
59 KOG1173 Anaphase-promoting com 99.2 1.9E-08 4.1E-13 95.7 25.3 261 72-339 244-517 (611)
60 PRK12370 invasion protein regu 99.2 7.6E-09 1.7E-13 105.3 24.3 257 40-308 255-537 (553)
61 KOG1129 TPR repeat-containing 99.2 2.1E-09 4.5E-14 95.4 17.3 228 76-341 227-459 (478)
62 KOG2076 RNA polymerase III tra 99.1 2E-07 4.4E-12 93.5 29.9 333 7-340 170-555 (895)
63 KOG1174 Anaphase-promoting com 99.1 2.5E-07 5.5E-12 84.9 26.6 300 6-312 190-506 (564)
64 KOG1129 TPR repeat-containing 99.1 9.8E-09 2.1E-13 91.2 16.7 197 140-341 220-425 (478)
65 PRK11189 lipoprotein NlpI; Pro 99.1 5.6E-08 1.2E-12 90.7 22.6 217 85-310 39-269 (296)
66 PRK11189 lipoprotein NlpI; Pro 99.1 2.7E-07 5.7E-12 86.2 27.0 94 74-170 66-159 (296)
67 KOG1915 Cell cycle control pro 99.0 3.1E-06 6.7E-11 79.3 31.8 318 18-341 149-537 (677)
68 KOG1840 Kinesin light chain [C 99.0 3.5E-08 7.7E-13 96.3 19.8 225 47-271 205-476 (508)
69 KOG2047 mRNA splicing factor [ 99.0 3.2E-06 6.9E-11 82.0 30.3 323 10-340 248-687 (835)
70 KOG1173 Anaphase-promoting com 99.0 7.3E-07 1.6E-11 85.2 25.7 271 42-317 245-529 (611)
71 PF12569 NARP1: NMDA receptor- 98.9 7.3E-07 1.6E-11 88.2 25.8 148 192-342 129-293 (517)
72 KOG1174 Anaphase-promoting com 98.9 1.7E-05 3.7E-10 73.2 31.7 246 85-337 209-497 (564)
73 PF12569 NARP1: NMDA receptor- 98.9 2.3E-06 5E-11 84.7 28.0 123 213-338 198-332 (517)
74 cd05804 StaR_like StaR_like; a 98.9 6.5E-06 1.4E-10 79.4 30.7 195 147-341 118-337 (355)
75 PF04733 Coatomer_E: Coatomer 98.9 8.6E-08 1.9E-12 88.3 16.4 144 186-339 114-264 (290)
76 KOG0547 Translocase of outer m 98.9 2.2E-06 4.8E-11 80.6 25.4 291 44-340 118-491 (606)
77 COG3063 PilF Tfp pilus assembl 98.9 4.1E-07 8.9E-12 77.4 18.6 161 177-342 38-204 (250)
78 KOG4162 Predicted calmodulin-b 98.9 1.1E-05 2.4E-10 80.0 30.7 332 6-341 319-784 (799)
79 KOG1070 rRNA processing protei 98.8 4.4E-07 9.6E-12 94.8 21.2 203 138-344 1453-1667(1710)
80 PF12854 PPR_1: PPR repeat 98.8 5.7E-09 1.2E-13 61.8 4.2 34 4-37 1-34 (34)
81 COG3063 PilF Tfp pilus assembl 98.8 3.5E-06 7.6E-11 71.9 22.0 195 112-311 40-241 (250)
82 cd05804 StaR_like StaR_like; a 98.8 1.8E-05 3.9E-10 76.3 29.9 291 10-306 6-336 (355)
83 PF04733 Coatomer_E: Coatomer 98.8 4.9E-07 1.1E-11 83.3 17.5 247 53-311 13-270 (290)
84 KOG3616 Selective LIM binding 98.8 3.7E-06 8E-11 82.7 23.4 284 15-335 620-932 (1636)
85 KOG1125 TPR repeat-containing 98.7 4.2E-07 9E-12 87.1 16.1 219 117-339 295-526 (579)
86 KOG0624 dsRNA-activated protei 98.7 2.3E-05 4.9E-10 70.7 25.7 57 283-339 313-369 (504)
87 KOG4340 Uncharacterized conser 98.7 7.7E-06 1.7E-10 72.2 22.4 177 156-336 125-335 (459)
88 KOG2047 mRNA splicing factor [ 98.7 5.8E-05 1.3E-09 73.6 30.3 145 187-334 360-534 (835)
89 PF12854 PPR_1: PPR repeat 98.7 3.9E-08 8.5E-13 58.2 4.5 33 138-170 2-34 (34)
90 PRK04841 transcriptional regul 98.7 0.00013 2.8E-09 79.8 34.7 322 20-341 384-761 (903)
91 KOG2376 Signal recognition par 98.6 0.00031 6.7E-09 68.1 30.8 143 189-335 356-515 (652)
92 TIGR03302 OM_YfiO outer membra 98.6 8.3E-06 1.8E-10 73.6 19.6 181 142-340 32-232 (235)
93 KOG1156 N-terminal acetyltrans 98.6 0.00032 7E-09 68.7 30.8 314 22-342 53-436 (700)
94 KOG1070 rRNA processing protei 98.6 3.8E-05 8.1E-10 81.0 25.2 226 106-337 1457-1697(1710)
95 KOG1156 N-terminal acetyltrans 98.6 0.00028 6.1E-09 69.1 29.5 326 11-342 76-470 (700)
96 KOG1125 TPR repeat-containing 98.5 9.3E-06 2E-10 78.1 17.7 214 18-236 293-525 (579)
97 KOG3617 WD40 and TPR repeat-co 98.5 1.7E-05 3.7E-10 79.1 19.5 306 10-338 726-1107(1416)
98 KOG4162 Predicted calmodulin-b 98.5 0.00047 1E-08 68.9 29.4 301 39-341 321-750 (799)
99 PRK04841 transcriptional regul 98.5 0.00074 1.6E-08 73.9 34.7 370 14-390 345-767 (903)
100 PRK10370 formate-dependent nit 98.5 1.9E-05 4.1E-10 68.8 17.9 119 222-342 52-175 (198)
101 KOG1128 Uncharacterized conser 98.5 1E-05 2.2E-10 79.8 17.4 191 138-343 393-585 (777)
102 KOG3785 Uncharacterized conser 98.5 0.00015 3.3E-09 65.8 23.0 130 16-149 63-225 (557)
103 PLN02789 farnesyltranstransfer 98.4 8.5E-05 1.8E-09 69.6 22.4 231 74-338 39-300 (320)
104 TIGR03302 OM_YfiO outer membra 98.4 2.6E-05 5.6E-10 70.4 18.6 181 105-308 31-234 (235)
105 KOG0548 Molecular co-chaperone 98.4 0.00031 6.6E-09 67.4 25.3 195 146-341 227-456 (539)
106 KOG1128 Uncharacterized conser 98.4 2.1E-05 4.6E-10 77.7 17.7 206 47-271 404-613 (777)
107 KOG3616 Selective LIM binding 98.4 0.00017 3.7E-09 71.4 23.4 239 79-341 739-1025(1636)
108 KOG2376 Signal recognition par 98.4 0.002 4.2E-08 62.8 29.6 307 16-335 18-400 (652)
109 PRK15179 Vi polysaccharide bio 98.4 7.6E-05 1.7E-09 77.0 21.6 158 173-341 85-246 (694)
110 COG5010 TadD Flp pilus assembl 98.3 8.9E-05 1.9E-09 64.8 18.5 154 178-334 70-225 (257)
111 TIGR00756 PPR pentatricopeptid 98.3 7.7E-07 1.7E-11 53.3 4.3 35 73-107 1-35 (35)
112 PRK15359 type III secretion sy 98.3 1.6E-05 3.4E-10 65.5 13.5 107 212-321 27-136 (144)
113 KOG4340 Uncharacterized conser 98.3 0.00038 8.2E-09 61.9 22.4 149 82-234 154-335 (459)
114 PLN02789 farnesyltranstransfer 98.3 0.00085 1.8E-08 62.9 26.5 209 43-257 39-267 (320)
115 PRK15359 type III secretion sy 98.3 1.4E-05 3E-10 65.8 12.9 106 231-341 15-122 (144)
116 TIGR00756 PPR pentatricopeptid 98.3 1E-06 2.2E-11 52.8 4.3 35 175-209 1-35 (35)
117 PRK10370 formate-dependent nit 98.3 8.2E-05 1.8E-09 64.8 17.8 153 150-314 23-181 (198)
118 PRK14720 transcript cleavage f 98.3 0.00033 7.1E-09 73.3 23.6 232 40-322 30-268 (906)
119 PRK15179 Vi polysaccharide bio 98.2 0.001 2.2E-08 68.8 26.3 191 76-285 32-230 (694)
120 PF13812 PPR_3: Pentatricopept 98.2 2.3E-06 4.9E-11 50.9 4.3 33 73-105 2-34 (34)
121 COG4783 Putative Zn-dependent 98.2 0.00042 9.1E-09 65.9 21.2 136 79-237 313-453 (484)
122 KOG1914 mRNA cleavage and poly 98.2 0.0068 1.5E-07 58.6 29.2 148 190-340 347-501 (656)
123 COG4783 Putative Zn-dependent 98.2 0.00028 6.1E-09 67.0 19.5 174 159-338 253-435 (484)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.7E-05 1.2E-09 72.2 15.0 123 211-338 171-295 (395)
125 PF13812 PPR_3: Pentatricopept 98.2 3.4E-06 7.3E-11 50.1 4.3 33 175-207 2-34 (34)
126 KOG0985 Vesicle coat protein c 98.2 0.0017 3.6E-08 66.9 25.4 283 24-339 1062-1369(1666)
127 KOG3081 Vesicle coat complex C 98.1 0.0043 9.2E-08 54.6 24.0 115 220-338 148-269 (299)
128 COG5010 TadD Flp pilus assembl 98.1 0.00028 6E-09 61.8 16.9 154 45-201 70-229 (257)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.6E-05 1.9E-09 71.0 15.1 119 76-200 173-294 (395)
130 TIGR02552 LcrH_SycD type III s 98.1 5.4E-05 1.2E-09 61.7 12.1 97 245-341 17-115 (135)
131 PRK14720 transcript cleavage f 98.1 0.0018 3.8E-08 68.0 25.0 234 8-288 29-268 (906)
132 KOG3617 WD40 and TPR repeat-co 98.1 0.0014 3E-08 66.1 22.7 243 37-305 722-995 (1416)
133 KOG3081 Vesicle coat complex C 98.1 0.0015 3.4E-08 57.3 20.4 250 50-311 17-276 (299)
134 KOG1127 TPR repeat-containing 98.1 0.00037 8E-09 71.5 19.1 61 276-336 849-909 (1238)
135 KOG0985 Vesicle coat protein c 98.1 0.0069 1.5E-07 62.7 27.1 250 24-296 1089-1373(1666)
136 KOG0548 Molecular co-chaperone 98.0 0.0042 9.1E-08 59.9 24.4 315 18-340 10-421 (539)
137 PRK15363 pathogenicity island 98.0 8.5E-05 1.8E-09 60.5 11.1 94 247-340 37-132 (157)
138 KOG0624 dsRNA-activated protei 98.0 0.01 2.2E-07 54.1 25.2 297 10-313 38-377 (504)
139 PF01535 PPR: PPR repeat; Int 98.0 9.8E-06 2.1E-10 46.9 3.3 31 73-103 1-31 (31)
140 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.4E-10 46.6 3.4 31 175-205 1-31 (31)
141 KOG3785 Uncharacterized conser 97.9 0.016 3.6E-07 53.0 26.3 283 53-342 163-492 (557)
142 KOG3060 Uncharacterized conser 97.9 0.004 8.6E-08 54.4 19.4 163 147-314 56-228 (289)
143 KOG1127 TPR repeat-containing 97.9 0.0033 7.1E-08 64.8 21.4 173 26-202 474-658 (1238)
144 cd00189 TPR Tetratricopeptide 97.9 0.00027 5.8E-09 52.7 11.0 93 248-340 3-97 (100)
145 TIGR02552 LcrH_SycD type III s 97.8 0.00059 1.3E-08 55.5 13.3 88 113-202 23-113 (135)
146 KOG2053 Mitochondrial inherita 97.8 0.051 1.1E-06 55.9 31.9 67 280-346 439-508 (932)
147 KOG1914 mRNA cleavage and poly 97.8 0.037 8.1E-07 53.7 29.2 335 7-345 17-469 (656)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00063 1.4E-08 53.7 12.3 101 213-313 6-112 (119)
149 PF04840 Vps16_C: Vps16, C-ter 97.8 0.034 7.4E-07 52.1 25.6 111 210-337 178-288 (319)
150 PF09976 TPR_21: Tetratricopep 97.8 0.00094 2E-08 55.1 13.5 83 253-336 56-143 (145)
151 KOG3060 Uncharacterized conser 97.8 0.021 4.5E-07 50.1 21.3 185 85-275 25-222 (289)
152 PF12895 Apc3: Anaphase-promot 97.7 5.4E-05 1.2E-09 55.8 5.0 78 258-336 2-83 (84)
153 PF09976 TPR_21: Tetratricopep 97.7 0.0037 8E-08 51.5 16.5 122 75-199 15-143 (145)
154 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00074 1.6E-08 53.3 11.7 96 246-341 3-106 (119)
155 KOG2053 Mitochondrial inherita 97.6 0.095 2E-06 54.0 26.8 54 218-271 199-252 (932)
156 PLN03088 SGT1, suppressor of 97.6 0.0015 3.2E-08 62.6 13.9 97 217-316 10-109 (356)
157 PF13414 TPR_11: TPR repeat; P 97.6 0.0003 6.4E-09 49.6 6.8 64 276-339 2-66 (69)
158 PF05843 Suf: Suppressor of fo 97.5 0.0043 9.3E-08 57.3 15.2 128 73-203 2-136 (280)
159 KOG2796 Uncharacterized conser 97.5 0.017 3.8E-07 50.7 17.4 201 11-214 70-324 (366)
160 PRK02603 photosystem I assembl 97.5 0.0017 3.7E-08 55.3 11.6 80 247-326 37-121 (172)
161 PF05843 Suf: Suppressor of fo 97.5 0.0056 1.2E-07 56.6 15.6 133 175-310 2-140 (280)
162 PF13432 TPR_16: Tetratricopep 97.5 0.00043 9.2E-09 48.1 6.3 58 283-340 3-60 (65)
163 PF14938 SNAP: Soluble NSF att 97.5 0.018 3.8E-07 53.4 18.8 124 149-272 120-264 (282)
164 PF08579 RPM2: Mitochondrial r 97.5 0.0018 4E-08 49.1 9.6 81 176-257 27-116 (120)
165 cd00189 TPR Tetratricopeptide 97.4 0.002 4.4E-08 47.7 10.4 58 76-134 4-61 (100)
166 CHL00033 ycf3 photosystem I as 97.4 0.0019 4.2E-08 54.7 11.1 93 245-337 35-139 (168)
167 PF12688 TPR_5: Tetratrico pep 97.4 0.0053 1.2E-07 48.2 12.5 106 78-185 7-117 (120)
168 PF08579 RPM2: Mitochondrial r 97.4 0.0037 8E-08 47.5 10.9 81 74-155 27-116 (120)
169 PF14938 SNAP: Soluble NSF att 97.4 0.025 5.4E-07 52.5 19.0 168 75-271 38-222 (282)
170 PRK10153 DNA-binding transcrip 97.4 0.011 2.4E-07 59.4 17.5 63 277-340 420-482 (517)
171 PLN03088 SGT1, suppressor of 97.4 0.0038 8.2E-08 59.9 13.4 102 180-285 8-111 (356)
172 PRK02603 photosystem I assembl 97.4 0.0073 1.6E-07 51.4 13.9 91 71-163 34-126 (172)
173 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.5E-08 45.9 7.3 61 251-311 3-65 (65)
174 PF06239 ECSIT: Evolutionarily 97.3 0.0019 4.1E-08 55.3 9.5 97 163-260 34-153 (228)
175 PF04840 Vps16_C: Vps16, C-ter 97.3 0.14 3.1E-06 48.0 25.4 104 150-270 184-287 (319)
176 PF10037 MRP-S27: Mitochondria 97.3 0.0035 7.5E-08 60.5 12.5 120 138-258 61-186 (429)
177 PF10037 MRP-S27: Mitochondria 97.3 0.014 2.9E-07 56.5 16.2 129 196-324 50-186 (429)
178 PRK15363 pathogenicity island 97.3 0.025 5.4E-07 46.3 14.8 105 31-136 24-132 (157)
179 PF14559 TPR_19: Tetratricopep 97.2 0.00058 1.3E-08 47.9 4.8 53 288-340 2-54 (68)
180 CHL00033 ycf3 photosystem I as 97.2 0.011 2.4E-07 50.0 13.5 80 73-154 36-117 (168)
181 KOG0553 TPR repeat-containing 97.2 0.0015 3.3E-08 58.4 8.1 97 218-317 90-189 (304)
182 KOG0553 TPR repeat-containing 97.2 0.0041 8.8E-08 55.8 10.7 97 182-282 89-187 (304)
183 PRK10866 outer membrane biogen 97.2 0.065 1.4E-06 48.3 18.7 55 47-101 38-98 (243)
184 KOG1538 Uncharacterized conser 97.2 0.038 8.1E-07 54.7 17.5 180 75-277 601-806 (1081)
185 COG4700 Uncharacterized protei 97.2 0.0088 1.9E-07 49.7 11.2 130 205-337 85-219 (251)
186 PF12895 Apc3: Anaphase-promot 97.1 0.0012 2.6E-08 48.6 5.8 80 187-270 2-83 (84)
187 KOG1130 Predicted G-alpha GTPa 97.1 0.0061 1.3E-07 56.9 11.2 128 211-338 197-342 (639)
188 PRK10866 outer membrane biogen 97.1 0.077 1.7E-06 47.8 18.4 173 149-338 38-239 (243)
189 PF13281 DUF4071: Domain of un 97.1 0.07 1.5E-06 50.6 18.6 161 146-309 144-337 (374)
190 PF13371 TPR_9: Tetratricopept 97.1 0.0018 4E-08 46.0 6.5 57 285-341 3-59 (73)
191 COG4235 Cytochrome c biogenesi 97.1 0.0039 8.5E-08 56.1 9.4 104 242-345 153-261 (287)
192 COG3898 Uncharacterized membra 97.1 0.26 5.7E-06 46.1 25.3 282 43-339 84-391 (531)
193 KOG0550 Molecular chaperone (D 97.0 0.033 7.2E-07 52.2 14.8 155 182-342 177-352 (486)
194 KOG2041 WD40 repeat protein [G 97.0 0.28 6E-06 49.3 21.5 184 55-271 748-949 (1189)
195 KOG2041 WD40 repeat protein [G 97.0 0.4 8.6E-06 48.3 22.4 137 23-174 747-909 (1189)
196 COG4700 Uncharacterized protei 96.9 0.18 3.9E-06 42.2 16.9 99 173-271 88-186 (251)
197 PF13414 TPR_11: TPR repeat; P 96.9 0.0025 5.4E-08 44.8 5.7 64 245-308 3-69 (69)
198 PF14559 TPR_19: Tetratricopep 96.9 0.0018 3.9E-08 45.3 4.8 53 258-310 4-58 (68)
199 PRK10153 DNA-binding transcrip 96.9 0.071 1.5E-06 53.7 17.7 70 208-280 419-489 (517)
200 KOG2796 Uncharacterized conser 96.9 0.19 4.1E-06 44.5 17.7 230 73-310 70-319 (366)
201 PF06239 ECSIT: Evolutionarily 96.9 0.012 2.7E-07 50.4 10.4 97 61-158 34-153 (228)
202 PRK10803 tol-pal system protei 96.9 0.012 2.5E-07 53.6 10.9 94 247-340 145-246 (263)
203 PRK15331 chaperone protein Sic 96.9 0.011 2.4E-07 48.6 9.4 86 254-339 46-133 (165)
204 PF03704 BTAD: Bacterial trans 96.8 0.0048 1E-07 50.9 7.1 69 278-346 63-136 (146)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.55 1.2E-05 44.9 23.6 129 210-339 398-530 (660)
206 COG3898 Uncharacterized membra 96.7 0.58 1.3E-05 44.0 28.3 265 57-332 69-350 (531)
207 PF12688 TPR_5: Tetratrico pep 96.6 0.051 1.1E-06 42.7 11.4 81 255-335 11-99 (120)
208 PF09205 DUF1955: Domain of un 96.6 0.26 5.6E-06 38.8 15.4 139 186-343 14-152 (161)
209 PF12921 ATP13: Mitochondrial 96.6 0.028 6.1E-07 44.7 9.6 49 205-253 48-96 (126)
210 PF13431 TPR_17: Tetratricopep 96.5 0.003 6.5E-08 37.1 3.0 32 300-331 2-33 (34)
211 PF13371 TPR_9: Tetratricopept 96.5 0.013 2.9E-07 41.5 7.0 62 253-314 3-66 (73)
212 PF13428 TPR_14: Tetratricopep 96.4 0.0071 1.5E-07 38.0 4.6 41 278-318 2-42 (44)
213 PF13525 YfiO: Outer membrane 96.4 0.2 4.3E-06 43.8 15.3 50 51-100 15-70 (203)
214 PRK10803 tol-pal system protei 96.4 0.098 2.1E-06 47.6 13.4 99 210-311 144-251 (263)
215 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.019 4.1E-07 55.1 9.0 95 245-342 75-176 (453)
216 PF03704 BTAD: Bacterial trans 96.4 0.13 2.8E-06 42.3 12.9 66 146-211 65-138 (146)
217 PF07079 DUF1347: Protein of u 96.3 1.1 2.3E-05 43.2 26.1 71 266-337 445-521 (549)
218 PF12921 ATP13: Mitochondrial 96.3 0.075 1.6E-06 42.2 10.5 53 102-154 47-99 (126)
219 KOG2280 Vacuolar assembly/sort 96.2 1.7 3.8E-05 44.3 25.8 303 15-334 442-793 (829)
220 PF13525 YfiO: Outer membrane 96.1 0.18 4E-06 44.1 13.4 49 283-331 147-198 (203)
221 KOG3941 Intermediate in Toll s 95.9 0.063 1.4E-06 47.8 9.1 110 161-271 52-185 (406)
222 PF13424 TPR_12: Tetratricopep 95.9 0.019 4.1E-07 41.3 5.1 61 278-338 6-73 (78)
223 PF13424 TPR_12: Tetratricopep 95.8 0.02 4.4E-07 41.2 5.0 59 247-305 7-74 (78)
224 KOG1585 Protein required for f 95.7 1.2 2.5E-05 39.3 15.8 53 281-334 194-250 (308)
225 PF13281 DUF4071: Domain of un 95.7 1.8 4E-05 41.2 18.7 71 47-117 147-227 (374)
226 COG4235 Cytochrome c biogenesi 95.7 0.25 5.5E-06 44.8 12.3 110 104-217 153-268 (287)
227 KOG1538 Uncharacterized conser 95.7 2.8 6E-05 42.2 19.9 85 149-245 709-806 (1081)
228 KOG4555 TPR repeat-containing 95.5 0.21 4.6E-06 39.2 9.5 89 254-342 52-146 (175)
229 COG5107 RNA14 Pre-mRNA 3'-end 95.5 0.83 1.8E-05 43.7 15.1 144 107-256 397-546 (660)
230 KOG1920 IkappaB kinase complex 95.5 0.68 1.5E-05 49.6 16.0 93 149-271 958-1052(1265)
231 KOG2280 Vacuolar assembly/sort 95.4 3.7 8E-05 42.1 25.6 270 11-300 472-793 (829)
232 KOG0543 FKBP-type peptidyl-pro 95.4 0.2 4.4E-06 47.2 11.0 64 277-340 257-320 (397)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.14 3.1E-06 49.3 9.5 61 208-271 74-138 (453)
234 PF08631 SPO22: Meiosis protei 95.2 2.6 5.7E-05 38.9 23.0 60 109-170 86-148 (278)
235 COG1729 Uncharacterized protei 95.2 0.22 4.8E-06 44.5 10.0 91 247-340 144-244 (262)
236 COG3118 Thioredoxin domain-con 95.0 1.5 3.3E-05 39.8 14.7 116 52-170 145-263 (304)
237 KOG1920 IkappaB kinase complex 95.0 5.8 0.00013 43.0 20.9 27 74-100 792-820 (1265)
238 COG0457 NrfG FOG: TPR repeat [ 94.9 2.3 5E-05 37.0 27.8 194 143-340 59-265 (291)
239 PF04053 Coatomer_WDAD: Coatom 94.9 1.2 2.6E-05 43.9 15.3 104 151-272 326-429 (443)
240 KOG3941 Intermediate in Toll s 94.8 0.3 6.6E-06 43.7 9.7 110 60-170 53-186 (406)
241 KOG0550 Molecular chaperone (D 94.8 3.9 8.5E-05 39.0 19.0 246 19-271 58-347 (486)
242 PF04053 Coatomer_WDAD: Coatom 94.7 1.3 2.7E-05 43.8 14.8 129 44-198 298-426 (443)
243 smart00299 CLH Clathrin heavy 94.7 1.9 4.2E-05 34.9 14.8 41 113-155 13-53 (140)
244 PF13512 TPR_18: Tetratricopep 94.7 0.51 1.1E-05 38.1 9.9 56 256-311 21-81 (142)
245 KOG0543 FKBP-type peptidyl-pro 94.6 0.84 1.8E-05 43.2 12.7 95 246-340 258-355 (397)
246 COG3118 Thioredoxin domain-con 94.5 3.6 7.8E-05 37.5 16.9 144 182-328 142-289 (304)
247 smart00299 CLH Clathrin heavy 94.2 2.5 5.5E-05 34.2 15.7 85 179-272 12-96 (140)
248 PRK09687 putative lyase; Provi 94.1 4.8 0.0001 37.2 26.8 241 31-288 27-278 (280)
249 PRK09687 putative lyase; Provi 94.1 4.8 0.0001 37.1 28.1 241 61-321 26-277 (280)
250 PRK11906 transcriptional regul 94.0 1.3 2.9E-05 43.0 12.9 117 224-340 273-401 (458)
251 PF10300 DUF3808: Protein of u 93.8 5.4 0.00012 39.9 17.4 161 177-340 191-376 (468)
252 COG0457 NrfG FOG: TPR repeat [ 93.5 4.6 0.0001 35.0 24.0 201 107-309 59-268 (291)
253 KOG4555 TPR repeat-containing 93.5 0.78 1.7E-05 36.1 8.4 102 218-321 52-159 (175)
254 KOG2610 Uncharacterized conser 93.5 2.4 5.2E-05 39.2 12.8 48 188-236 117-164 (491)
255 PF00515 TPR_1: Tetratricopept 93.4 0.18 4E-06 29.2 4.0 32 278-309 2-33 (34)
256 KOG1941 Acetylcholine receptor 93.3 1.7 3.8E-05 40.5 11.8 122 215-336 128-271 (518)
257 PF10300 DUF3808: Protein of u 93.2 9.1 0.0002 38.3 18.0 175 92-271 177-373 (468)
258 PRK15331 chaperone protein Sic 93.1 1.7 3.6E-05 36.0 10.4 86 82-170 47-132 (165)
259 KOG1130 Predicted G-alpha GTPa 93.1 2.9 6.2E-05 39.8 13.0 130 176-305 197-343 (639)
260 PF07719 TPR_2: Tetratricopept 93.0 0.31 6.7E-06 28.1 4.7 33 278-310 2-34 (34)
261 PF13512 TPR_18: Tetratricopep 93.0 4.1 8.8E-05 33.0 12.4 55 184-238 20-76 (142)
262 PF09205 DUF1955: Domain of un 92.9 3.9 8.5E-05 32.4 14.3 83 156-241 69-151 (161)
263 COG3629 DnrI DNA-binding trans 92.9 0.66 1.4E-05 42.2 8.5 62 278-339 154-215 (280)
264 PRK11906 transcriptional regul 92.8 6.7 0.00014 38.3 15.5 157 175-335 252-431 (458)
265 COG3629 DnrI DNA-binding trans 92.5 1.1 2.4E-05 40.8 9.4 75 144-218 154-236 (280)
266 KOG0890 Protein kinase of the 92.5 27 0.00059 41.2 25.2 308 16-342 1389-1733(2382)
267 KOG2066 Vacuolar assembly/sort 92.1 17 0.00036 37.8 22.7 150 17-173 363-535 (846)
268 COG4649 Uncharacterized protei 92.1 2.6 5.6E-05 35.1 10.1 124 83-207 69-200 (221)
269 PF13170 DUF4003: Protein of u 92.1 7.6 0.00017 36.1 14.7 48 89-136 79-132 (297)
270 PF09613 HrpB1_HrpK: Bacterial 92.0 6.2 0.00014 32.6 13.1 88 218-308 19-108 (160)
271 PF04184 ST7: ST7 protein; In 91.7 6.1 0.00013 38.8 13.7 149 186-346 180-330 (539)
272 PF13176 TPR_7: Tetratricopept 91.6 0.46 1E-05 28.1 4.2 26 74-99 1-26 (36)
273 PF04184 ST7: ST7 protein; In 91.3 16 0.00034 36.0 18.5 101 211-311 261-380 (539)
274 KOG1941 Acetylcholine receptor 91.0 7.5 0.00016 36.5 13.0 53 218-270 215-271 (518)
275 PF02259 FAT: FAT domain; Int 91.0 15 0.00032 35.0 21.0 150 172-323 144-304 (352)
276 COG1729 Uncharacterized protei 90.8 7.6 0.00016 35.0 12.6 101 211-312 144-250 (262)
277 PF13428 TPR_14: Tetratricopep 90.6 1.1 2.4E-05 27.8 5.5 28 74-101 3-30 (44)
278 KOG2610 Uncharacterized conser 90.5 3.3 7.2E-05 38.3 10.1 115 221-337 115-235 (491)
279 PF13170 DUF4003: Protein of u 90.3 15 0.00033 34.1 15.4 135 190-326 78-231 (297)
280 PF13176 TPR_7: Tetratricopept 90.1 0.75 1.6E-05 27.2 4.1 24 177-200 2-25 (36)
281 PF10602 RPN7: 26S proteasome 90.0 5.6 0.00012 33.8 10.9 64 73-136 37-102 (177)
282 KOG4234 TPR repeat-containing 89.9 1.6 3.5E-05 37.2 7.2 88 254-341 104-198 (271)
283 PF02284 COX5A: Cytochrome c o 89.7 2.7 5.9E-05 31.5 7.4 62 190-253 26-87 (108)
284 COG4105 ComL DNA uptake lipopr 89.7 15 0.00032 32.9 19.1 59 282-340 172-233 (254)
285 COG4105 ComL DNA uptake lipopr 89.5 15 0.00033 32.9 20.5 165 143-311 35-238 (254)
286 KOG1258 mRNA processing protei 89.5 25 0.00055 35.4 24.0 181 142-327 296-491 (577)
287 KOG2396 HAT (Half-A-TPR) repea 89.5 23 0.0005 34.9 17.8 97 206-305 456-558 (568)
288 KOG0276 Vesicle coat complex C 89.4 4.6 0.0001 40.4 10.9 96 22-134 598-693 (794)
289 KOG1258 mRNA processing protei 89.1 27 0.00059 35.2 23.7 300 40-340 44-395 (577)
290 COG4649 Uncharacterized protei 88.8 13 0.00028 31.2 11.9 119 52-171 69-195 (221)
291 KOG0276 Vesicle coat complex C 88.8 9.5 0.00021 38.3 12.5 150 154-337 597-747 (794)
292 PF00515 TPR_1: Tetratricopept 88.8 1.1 2.5E-05 25.7 4.2 28 73-100 2-29 (34)
293 PF10602 RPN7: 26S proteasome 88.7 6.6 0.00014 33.4 10.4 59 144-202 37-101 (177)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 88.7 3.3 7.1E-05 30.7 7.1 63 189-253 22-84 (103)
295 PF13181 TPR_8: Tetratricopept 88.2 1 2.2E-05 25.9 3.8 30 279-308 3-32 (34)
296 PF02259 FAT: FAT domain; Int 87.7 26 0.00056 33.3 17.6 68 275-342 144-215 (352)
297 PF09613 HrpB1_HrpK: Bacterial 87.7 3.2 7E-05 34.2 7.4 47 291-337 24-70 (160)
298 KOG2114 Vacuolar assembly/sort 87.6 33 0.00073 36.1 15.8 179 109-303 336-516 (933)
299 PF00637 Clathrin: Region in C 87.4 0.55 1.2E-05 38.3 3.0 25 174-198 42-66 (143)
300 PRK11619 lytic murein transgly 87.4 41 0.00088 35.3 29.6 299 22-337 45-372 (644)
301 PF07079 DUF1347: Protein of u 87.3 30 0.00066 33.7 23.1 131 52-186 17-179 (549)
302 PF13929 mRNA_stabil: mRNA sta 87.3 18 0.0004 33.0 12.6 112 86-197 142-261 (292)
303 COG4785 NlpI Lipoprotein NlpI, 87.3 19 0.00042 31.4 15.1 162 174-342 99-268 (297)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 4.9 0.00011 29.9 7.1 59 90-150 25-83 (103)
305 KOG2114 Vacuolar assembly/sort 86.5 47 0.001 35.0 18.7 85 176-272 433-517 (933)
306 TIGR02561 HrpB1_HrpK type III 86.3 3.6 7.8E-05 33.4 6.8 52 290-341 23-74 (153)
307 PF13374 TPR_10: Tetratricopep 85.7 2 4.4E-05 25.9 4.3 27 279-305 4-30 (42)
308 PF13374 TPR_10: Tetratricopep 85.6 2.2 4.7E-05 25.7 4.4 28 73-100 3-30 (42)
309 PF02284 COX5A: Cytochrome c o 85.2 5.2 0.00011 30.1 6.6 60 90-151 28-87 (108)
310 TIGR02561 HrpB1_HrpK type III 85.1 19 0.00042 29.3 11.7 65 119-186 22-88 (153)
311 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 7.7 0.00017 25.4 6.7 50 314-389 4-53 (53)
312 TIGR02508 type_III_yscG type I 84.7 15 0.00032 27.6 9.6 88 122-214 20-107 (115)
313 KOG4570 Uncharacterized conser 84.7 4.3 9.4E-05 37.2 7.3 96 138-237 59-163 (418)
314 KOG4648 Uncharacterized conser 84.6 2.7 5.8E-05 39.0 6.0 108 217-331 105-215 (536)
315 PF07719 TPR_2: Tetratricopept 84.3 2.7 5.9E-05 23.9 4.2 27 74-100 3-29 (34)
316 TIGR02508 type_III_yscG type I 83.6 16 0.00036 27.4 9.9 83 26-111 21-106 (115)
317 PRK15180 Vi polysaccharide bio 83.5 6.5 0.00014 38.3 8.2 121 186-310 301-424 (831)
318 PF07721 TPR_4: Tetratricopept 83.2 2 4.2E-05 23.2 3.0 23 313-335 3-25 (26)
319 KOG1464 COP9 signalosome, subu 82.2 38 0.00083 30.6 16.8 241 53-299 39-325 (440)
320 COG4455 ImpE Protein of avirul 82.1 6.1 0.00013 34.4 6.8 63 248-310 4-68 (273)
321 PF08631 SPO22: Meiosis protei 81.6 44 0.00095 30.8 24.4 62 176-238 86-150 (278)
322 PF13431 TPR_17: Tetratricopep 81.2 2.6 5.6E-05 24.5 3.1 24 140-163 10-33 (34)
323 PF07035 Mic1: Colon cancer-as 81.2 31 0.00068 28.9 14.3 131 93-235 15-146 (167)
324 KOG3364 Membrane protein invol 81.0 13 0.00027 29.8 7.6 65 276-340 31-100 (149)
325 PF13174 TPR_6: Tetratricopept 80.8 3.9 8.6E-05 23.0 3.9 25 284-308 7-31 (33)
326 PF07035 Mic1: Colon cancer-as 80.6 33 0.00071 28.8 16.4 124 68-202 25-148 (167)
327 PF00637 Clathrin: Region in C 80.1 0.65 1.4E-05 37.9 0.4 84 113-200 13-96 (143)
328 COG3947 Response regulator con 79.4 8.2 0.00018 35.1 7.0 59 280-338 282-340 (361)
329 KOG1585 Protein required for f 79.4 46 0.001 29.7 16.2 25 74-98 93-117 (308)
330 PF11207 DUF2989: Protein of u 78.2 25 0.00054 30.3 9.3 43 120-162 153-197 (203)
331 PF11207 DUF2989: Protein of u 77.9 21 0.00045 30.8 8.7 72 192-264 124-197 (203)
332 COG2976 Uncharacterized protei 77.5 46 0.00099 28.6 14.0 114 192-310 70-192 (207)
333 smart00028 TPR Tetratricopepti 77.1 5.3 0.00012 21.5 3.8 29 280-308 4-32 (34)
334 PRK15180 Vi polysaccharide bio 76.0 58 0.0013 32.1 11.9 126 220-347 300-427 (831)
335 KOG4570 Uncharacterized conser 75.6 50 0.0011 30.7 10.8 94 175-271 65-161 (418)
336 PF06552 TOM20_plant: Plant sp 75.4 44 0.00096 28.3 9.7 44 293-343 96-139 (186)
337 PRK13800 putative oxidoreducta 75.3 1.4E+02 0.003 33.0 28.6 183 31-228 625-808 (897)
338 PF13174 TPR_6: Tetratricopept 75.1 4.8 0.0001 22.6 3.1 28 313-340 2-29 (33)
339 PF13181 TPR_8: Tetratricopept 74.1 9.3 0.0002 21.6 4.3 27 74-100 3-29 (34)
340 PRK12798 chemotaxis protein; R 74.1 89 0.0019 30.4 19.9 181 156-339 125-323 (421)
341 KOG1586 Protein required for f 74.1 64 0.0014 28.7 14.2 53 259-311 128-188 (288)
342 KOG0991 Replication factor C, 73.6 66 0.0014 28.6 11.7 57 162-220 227-283 (333)
343 PF14853 Fis1_TPR_C: Fis1 C-te 73.3 8.5 0.00018 25.1 4.1 32 282-313 6-37 (53)
344 KOG1550 Extracellular protein 72.9 1.2E+02 0.0026 31.3 14.7 179 159-343 228-429 (552)
345 PHA02875 ankyrin repeat protei 72.8 83 0.0018 30.8 13.2 197 20-230 9-220 (413)
346 PF07163 Pex26: Pex26 protein; 72.5 49 0.0011 30.2 9.9 85 79-166 90-181 (309)
347 PRK10941 hypothetical protein; 71.6 24 0.00052 32.3 8.1 62 279-340 183-244 (269)
348 TIGR03504 FimV_Cterm FimV C-te 71.4 7.7 0.00017 24.2 3.5 26 316-341 4-29 (44)
349 TIGR03504 FimV_Cterm FimV C-te 70.7 11 0.00023 23.6 4.0 23 180-202 5-27 (44)
350 cd08819 CARD_MDA5_2 Caspase ac 70.7 16 0.00035 26.6 5.4 63 29-92 21-86 (88)
351 PF11838 ERAP1_C: ERAP1-like C 69.5 1E+02 0.0022 28.9 18.2 109 225-334 146-260 (324)
352 COG1747 Uncharacterized N-term 69.3 1.3E+02 0.0028 30.2 18.4 158 71-236 65-232 (711)
353 PF04190 DUF410: Protein of un 68.6 94 0.002 28.3 16.0 160 53-238 2-170 (260)
354 PF04097 Nic96: Nup93/Nic96; 68.3 1.6E+02 0.0034 30.8 16.6 21 255-275 515-535 (613)
355 KOG0403 Neoplastic transformat 67.9 1.3E+02 0.0028 29.6 17.9 63 280-342 512-574 (645)
356 KOG3807 Predicted membrane pro 67.8 71 0.0015 29.9 10.1 55 215-269 281-335 (556)
357 PF11768 DUF3312: Protein of u 67.4 78 0.0017 31.9 11.0 24 147-170 412-435 (545)
358 PF10366 Vps39_1: Vacuolar sor 67.4 52 0.0011 25.3 8.1 27 176-202 41-67 (108)
359 KOG4077 Cytochrome c oxidase, 67.4 32 0.00069 27.1 6.7 71 192-273 67-137 (149)
360 PF09477 Type_III_YscG: Bacter 66.9 55 0.0012 25.0 9.7 80 121-204 20-99 (116)
361 KOG4648 Uncharacterized conser 66.5 32 0.00069 32.2 7.7 86 181-277 104-198 (536)
362 KOG4077 Cytochrome c oxidase, 64.7 48 0.0011 26.2 7.2 57 92-150 69-125 (149)
363 cd08326 CARD_CASP9 Caspase act 64.5 21 0.00045 26.0 5.1 62 30-91 19-80 (84)
364 COG2976 Uncharacterized protei 64.4 94 0.002 26.8 15.1 84 117-203 99-188 (207)
365 PF14561 TPR_20: Tetratricopep 62.5 26 0.00057 25.9 5.4 43 299-341 10-52 (90)
366 PF09670 Cas_Cas02710: CRISPR- 62.5 1.6E+02 0.0034 28.7 12.3 53 184-237 141-197 (379)
367 COG2909 MalT ATP-dependent tra 62.3 2.3E+02 0.005 30.5 21.5 191 153-347 425-654 (894)
368 PF10579 Rapsyn_N: Rapsyn N-te 62.0 18 0.00039 25.8 4.2 46 221-266 18-64 (80)
369 KOG4642 Chaperone-dependent E3 61.8 40 0.00086 30.0 7.0 50 288-337 55-104 (284)
370 PF13762 MNE1: Mitochondrial s 61.0 90 0.002 25.4 9.2 78 44-121 42-129 (145)
371 PF11846 DUF3366: Domain of un 60.4 32 0.00069 29.6 6.6 35 274-308 141-175 (193)
372 smart00386 HAT HAT (Half-A-TPR 59.9 20 0.00044 19.6 3.7 28 291-318 1-28 (33)
373 KOG4234 TPR repeat-containing 59.0 1.2E+02 0.0026 26.3 9.4 95 219-315 105-206 (271)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 58.9 89 0.0019 24.7 8.5 42 295-336 81-124 (126)
375 KOG4279 Serine/threonine prote 58.9 1.1E+02 0.0025 32.0 10.5 180 127-310 183-399 (1226)
376 PF13762 MNE1: Mitochondrial s 58.7 1E+02 0.0022 25.2 11.2 76 147-222 43-128 (145)
377 KOG1308 Hsp70-interacting prot 58.3 6.5 0.00014 36.6 1.9 87 258-344 127-215 (377)
378 PF10579 Rapsyn_N: Rapsyn N-te 58.2 33 0.0007 24.6 4.9 45 289-333 18-65 (80)
379 COG1747 Uncharacterized N-term 57.9 2.1E+02 0.0046 28.7 23.2 58 144-202 67-126 (711)
380 PF13929 mRNA_stabil: mRNA sta 57.8 1.6E+02 0.0034 27.2 22.0 108 189-296 143-257 (292)
381 COG2178 Predicted RNA-binding 57.6 1.2E+02 0.0026 26.1 8.9 56 148-203 34-98 (204)
382 PF11663 Toxin_YhaV: Toxin wit 57.2 12 0.00026 29.8 2.9 33 185-219 106-138 (140)
383 PRK10564 maltose regulon perip 57.1 23 0.00049 32.7 5.1 41 176-216 259-299 (303)
384 KOG2034 Vacuolar sorting prote 56.5 2.9E+02 0.0062 29.8 23.7 91 17-112 365-455 (911)
385 KOG2066 Vacuolar assembly/sort 56.5 1.8E+02 0.004 30.7 11.6 148 118-272 367-532 (846)
386 PF10366 Vps39_1: Vacuolar sor 56.3 90 0.002 24.0 8.1 27 74-100 41-67 (108)
387 PF07163 Pex26: Pex26 protein; 56.2 1.5E+02 0.0033 27.1 9.9 86 181-269 90-182 (309)
388 KOG0376 Serine-threonine phosp 56.1 25 0.00054 34.5 5.4 78 258-335 17-96 (476)
389 PF11846 DUF3366: Domain of un 55.5 43 0.00093 28.8 6.6 52 220-271 119-170 (193)
390 KOG0545 Aryl-hydrocarbon recep 54.8 1.3E+02 0.0027 27.1 8.9 58 283-340 236-293 (329)
391 COG3947 Response regulator con 54.7 1.8E+02 0.0039 26.9 15.2 71 177-248 282-356 (361)
392 PRK10564 maltose regulon perip 54.3 26 0.00057 32.2 5.0 44 70-113 254-298 (303)
393 PF14863 Alkyl_sulf_dimr: Alky 54.2 78 0.0017 25.7 7.3 63 261-326 57-119 (141)
394 PF11663 Toxin_YhaV: Toxin wit 53.8 15 0.00033 29.2 3.0 32 84-117 107-138 (140)
395 TIGR02270 conserved hypothetic 52.8 2.4E+02 0.0052 27.8 23.2 234 17-273 45-280 (410)
396 PF14669 Asp_Glu_race_2: Putat 52.6 1.5E+02 0.0033 25.5 12.9 21 4-24 2-22 (233)
397 PF09986 DUF2225: Uncharacteri 52.6 98 0.0021 27.2 8.3 63 279-341 120-195 (214)
398 cd08332 CARD_CASP2 Caspase act 52.6 46 0.001 24.5 5.3 58 31-88 24-81 (90)
399 PF08424 NRDE-2: NRDE-2, neces 51.9 2.1E+02 0.0046 27.0 15.0 78 88-168 47-127 (321)
400 COG4785 NlpI Lipoprotein NlpI, 51.8 1.7E+02 0.0037 25.8 16.4 158 72-236 99-264 (297)
401 KOG4507 Uncharacterized conser 51.7 65 0.0014 32.7 7.5 38 278-315 677-714 (886)
402 PF11848 DUF3368: Domain of un 51.4 61 0.0013 20.5 5.2 34 82-115 12-45 (48)
403 PF06552 TOM20_plant: Plant sp 51.3 86 0.0019 26.6 7.2 46 293-338 51-100 (186)
404 KOG0292 Vesicle coat complex C 50.9 2.4E+02 0.0051 30.5 11.5 129 52-203 654-782 (1202)
405 PF06957 COPI_C: Coatomer (COP 50.6 84 0.0018 30.8 8.1 58 268-339 289-348 (422)
406 PF10345 Cohesin_load: Cohesin 50.5 3.2E+02 0.0069 28.6 20.5 19 286-304 586-604 (608)
407 PF12862 Apc5: Anaphase-promot 50.1 1E+02 0.0022 22.8 7.4 24 283-306 47-70 (94)
408 KOG0292 Vesicle coat complex C 49.8 28 0.00061 36.8 4.9 75 215-305 626-700 (1202)
409 PF11838 ERAP1_C: ERAP1-like C 49.5 2.2E+02 0.0049 26.5 18.9 26 57-82 56-83 (324)
410 PF11848 DUF3368: Domain of un 49.3 66 0.0014 20.4 5.2 33 185-217 13-45 (48)
411 KOG0687 26S proteasome regulat 48.8 2.4E+02 0.0051 26.6 13.0 11 413-423 320-330 (393)
412 PF04910 Tcf25: Transcriptiona 48.7 1.3E+02 0.0029 28.9 9.2 92 245-336 40-164 (360)
413 COG5108 RPO41 Mitochondrial DN 47.1 1E+02 0.0022 31.9 8.0 23 214-236 33-55 (1117)
414 PRK14700 recombination factor 46.2 2.5E+02 0.0054 26.1 10.0 49 73-121 124-175 (300)
415 COG5108 RPO41 Mitochondrial DN 46.0 1.9E+02 0.0041 30.0 9.7 71 46-119 33-115 (1117)
416 KOG1464 COP9 signalosome, subu 45.9 2.4E+02 0.0051 25.8 17.8 176 157-333 41-253 (440)
417 PF14689 SPOB_a: Sensor_kinase 45.6 35 0.00075 23.1 3.4 30 173-202 22-51 (62)
418 PHA02875 ankyrin repeat protei 45.4 3E+02 0.0065 26.8 12.7 76 52-131 10-89 (413)
419 PRK13800 putative oxidoreducta 44.9 4.7E+02 0.01 28.9 27.5 244 7-271 632-878 (897)
420 KOG4642 Chaperone-dependent E3 44.5 2.4E+02 0.0051 25.4 9.2 15 180-194 50-64 (284)
421 cd08819 CARD_MDA5_2 Caspase ac 43.6 1.3E+02 0.0028 22.1 6.9 39 155-194 48-86 (88)
422 KOG2063 Vacuolar assembly/sort 43.3 4.8E+02 0.01 28.5 19.8 160 176-338 506-711 (877)
423 PF08967 DUF1884: Domain of un 42.9 28 0.00061 24.8 2.6 27 370-396 7-33 (85)
424 COG4455 ImpE Protein of avirul 42.9 2.4E+02 0.0052 25.0 12.5 59 177-236 4-62 (273)
425 PF09477 Type_III_YscG: Bacter 42.3 1.6E+02 0.0034 22.7 7.5 85 24-111 20-107 (116)
426 PF14689 SPOB_a: Sensor_kinase 42.1 43 0.00093 22.6 3.5 44 57-100 6-51 (62)
427 KOG4507 Uncharacterized conser 41.9 1.6E+02 0.0034 30.1 8.4 133 206-341 568-706 (886)
428 PF12862 Apc5: Anaphase-promot 41.9 1.4E+02 0.0029 22.1 6.6 52 288-339 9-69 (94)
429 PRK12356 glutaminase; Reviewed 41.9 2.1E+02 0.0045 26.9 8.9 20 221-240 288-307 (319)
430 PF10345 Cohesin_load: Cohesin 41.8 4.3E+02 0.0094 27.6 26.8 48 288-335 372-428 (608)
431 COG5159 RPN6 26S proteasome re 41.3 2.9E+02 0.0063 25.5 11.0 125 78-203 9-154 (421)
432 PF04097 Nic96: Nup93/Nic96; 40.9 4.5E+02 0.0097 27.6 19.1 68 40-108 111-188 (613)
433 KOG0890 Protein kinase of the 40.6 7.8E+02 0.017 30.2 23.5 115 13-131 1423-1542(2382)
434 cd00280 TRFH Telomeric Repeat 40.4 1.4E+02 0.003 25.5 6.7 60 225-284 85-150 (200)
435 cd08323 CARD_APAF1 Caspase act 40.4 1.1E+02 0.0025 22.3 5.6 63 29-91 16-78 (86)
436 smart00777 Mad3_BUB1_I Mad3/BU 40.0 1.7E+02 0.0036 23.3 6.9 42 294-335 80-123 (125)
437 PF12069 DUF3549: Protein of u 39.6 3.4E+02 0.0074 25.8 12.5 88 147-237 170-258 (340)
438 COG4976 Predicted methyltransf 39.2 63 0.0014 28.6 4.7 55 256-310 6-62 (287)
439 COG0735 Fur Fe2+/Zn2+ uptake r 38.7 1.9E+02 0.004 23.6 7.4 41 77-117 25-65 (145)
440 KOG0686 COP9 signalosome, subu 38.7 3.8E+02 0.0083 26.1 14.1 62 74-135 152-215 (466)
441 KOG0686 COP9 signalosome, subu 38.5 3.9E+02 0.0084 26.1 13.4 60 143-202 150-215 (466)
442 KOG4567 GTPase-activating prot 38.4 3.4E+02 0.0073 25.4 10.2 42 195-236 264-305 (370)
443 PF10255 Paf67: RNA polymerase 38.1 1.9E+02 0.0041 28.3 8.3 55 146-200 125-190 (404)
444 COG2909 MalT ATP-dependent tra 37.6 5.7E+02 0.012 27.8 22.8 218 52-271 426-685 (894)
445 PRK10941 hypothetical protein; 37.1 3.3E+02 0.0072 25.0 10.5 60 75-136 184-244 (269)
446 PF13934 ELYS: Nuclear pore co 37.1 3E+02 0.0065 24.4 11.4 71 215-289 114-184 (226)
447 KOG0551 Hsp90 co-chaperone CNS 37.0 1.2E+02 0.0027 28.4 6.5 85 252-336 88-178 (390)
448 KOG1586 Protein required for f 36.8 3.1E+02 0.0068 24.6 16.6 54 256-309 165-227 (288)
449 KOG2396 HAT (Half-A-TPR) repea 36.2 4.7E+02 0.01 26.4 22.9 239 90-337 300-556 (568)
450 PF10255 Paf67: RNA polymerase 34.9 2.7E+02 0.0058 27.3 8.8 96 40-135 74-192 (404)
451 PRK11639 zinc uptake transcrip 34.8 1.8E+02 0.0039 24.4 6.9 36 122-158 40-75 (169)
452 PF11817 Foie-gras_1: Foie gra 34.7 2.6E+02 0.0056 25.2 8.4 52 180-231 184-240 (247)
453 TIGR02328 conserved hypothetic 34.4 58 0.0012 25.0 3.3 28 370-397 47-74 (120)
454 TIGR03581 EF_0839 conserved hy 34.4 1.9E+02 0.0041 25.4 6.8 79 260-338 136-235 (236)
455 PF11768 DUF3312: Protein of u 34.3 3.1E+02 0.0067 27.9 9.2 58 43-100 410-472 (545)
456 PF13934 ELYS: Nuclear pore co 34.1 3.4E+02 0.0073 24.1 12.9 54 180-236 114-167 (226)
457 KOG3824 Huntingtin interacting 33.7 1.4E+02 0.0031 27.7 6.2 47 288-334 127-173 (472)
458 PF02607 B12-binding_2: B12 bi 33.6 74 0.0016 22.4 3.9 40 82-121 11-50 (79)
459 PF10475 DUF2450: Protein of u 33.2 3.8E+02 0.0083 24.8 9.5 27 74-100 129-155 (291)
460 PRK11639 zinc uptake transcrip 32.6 2.1E+02 0.0044 24.1 6.9 62 200-263 17-78 (169)
461 COG0735 Fur Fe2+/Zn2+ uptake r 32.6 2.6E+02 0.0057 22.7 7.3 19 218-236 29-47 (145)
462 COG2256 MGS1 ATPase related to 32.5 4.9E+02 0.011 25.5 12.9 49 70-118 244-295 (436)
463 PF11123 DNA_Packaging_2: DNA 32.5 1.7E+02 0.0036 20.6 5.0 32 122-155 12-43 (82)
464 KOG3807 Predicted membrane pro 32.5 1.7E+02 0.0036 27.5 6.6 103 86-202 230-339 (556)
465 KOG2297 Predicted translation 32.5 4.2E+02 0.0092 24.8 13.9 31 6-37 26-57 (412)
466 KOG0687 26S proteasome regulat 31.8 4.5E+02 0.0097 24.9 14.4 132 102-237 65-209 (393)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 31.5 2.6E+02 0.0057 22.1 9.0 42 125-167 81-123 (126)
468 PF14561 TPR_20: Tetratricopep 31.4 2.1E+02 0.0046 21.0 8.2 62 276-337 21-85 (90)
469 smart00638 LPD_N Lipoprotein N 31.2 6.1E+02 0.013 26.2 24.6 61 41-103 310-371 (574)
470 PF11817 Foie-gras_1: Foie gra 30.0 1.7E+02 0.0037 26.3 6.4 53 250-302 183-243 (247)
471 PF14044 NETI: NETI protein 29.9 49 0.0011 21.8 2.0 18 377-394 10-27 (57)
472 cd07153 Fur_like Ferric uptake 28.7 1.5E+02 0.0032 22.8 5.1 46 78-123 6-51 (116)
473 PF04034 DUF367: Domain of unk 28.5 3E+02 0.0066 21.8 7.5 55 245-299 66-121 (127)
474 cd08810 CARD_BCL10 Caspase act 28.4 1.4E+02 0.003 21.8 4.4 55 31-86 20-74 (84)
475 PRK13184 pknD serine/threonine 28.1 8.7E+02 0.019 27.0 23.3 149 189-340 671-833 (932)
476 cd07153 Fur_like Ferric uptake 27.8 1.5E+02 0.0032 22.8 5.0 47 180-226 6-52 (116)
477 KOG0376 Serine-threonine phosp 27.7 88 0.0019 30.9 4.2 57 285-341 12-68 (476)
478 KOG2300 Uncharacterized conser 27.6 6.5E+02 0.014 25.4 23.0 311 26-339 70-473 (629)
479 PF07720 TPR_3: Tetratricopept 27.5 1.4E+02 0.003 17.6 4.6 18 282-299 6-23 (36)
480 PF02607 B12-binding_2: B12 bi 27.4 1.2E+02 0.0027 21.3 4.1 39 185-223 12-50 (79)
481 PF11525 CopK: Copper resistan 27.3 23 0.0005 24.3 0.2 22 456-477 8-29 (73)
482 PF00356 LacI: Bacterial regul 26.7 61 0.0013 20.4 2.1 16 377-392 31-46 (46)
483 TIGR02270 conserved hypothetic 26.6 6.3E+02 0.014 24.9 25.3 176 105-298 98-273 (410)
484 cd08326 CARD_CASP9 Caspase act 26.1 2.6E+02 0.0056 20.3 6.2 39 155-193 42-80 (84)
485 KOG1550 Extracellular protein 25.9 7.4E+02 0.016 25.5 22.5 173 57-236 228-424 (552)
486 COG4976 Predicted methyltransf 25.9 1.4E+02 0.003 26.6 4.6 56 287-342 5-60 (287)
487 KOG0991 Replication factor C, 25.8 4.9E+02 0.011 23.4 14.7 146 149-320 136-281 (333)
488 PRK14962 DNA polymerase III su 25.4 7.1E+02 0.015 25.1 11.6 25 84-108 255-279 (472)
489 PF04190 DUF410: Protein of un 25.1 5.3E+02 0.011 23.5 16.7 159 155-340 2-170 (260)
490 PF01475 FUR: Ferric uptake re 25.0 1.4E+02 0.003 23.2 4.4 46 76-121 11-56 (120)
491 PRK00971 glutaminase; Provisio 24.9 5.8E+02 0.013 23.9 9.4 18 221-238 284-301 (307)
492 PF02847 MA3: MA3 domain; Int 24.6 1.7E+02 0.0037 22.3 4.8 20 78-97 8-27 (113)
493 cd08329 CARD_BIRC2_BIRC3 Caspa 24.4 1.8E+02 0.0039 21.6 4.6 51 32-82 28-78 (94)
494 PF01475 FUR: Ferric uptake re 24.3 1.4E+02 0.003 23.2 4.2 47 179-225 12-58 (120)
495 cd01671 CARD Caspase activatio 24.2 2.1E+02 0.0046 20.1 4.9 32 55-86 41-72 (80)
496 PF07064 RIC1: RIC1; InterPro 23.8 5.6E+02 0.012 23.3 15.1 85 250-340 158-249 (258)
497 PRK12356 glutaminase; Reviewed 23.8 2.6E+02 0.0057 26.3 6.4 207 138-384 93-306 (319)
498 cd00280 TRFH Telomeric Repeat 23.8 4.7E+02 0.01 22.5 7.9 22 216-237 118-139 (200)
499 cd08330 CARD_ASC_NALP1 Caspase 23.6 2.3E+02 0.005 20.4 4.9 54 29-82 17-70 (82)
500 PHA03100 ankyrin repeat protei 23.4 7.4E+02 0.016 24.6 11.4 239 14-270 36-305 (480)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-108 Score=853.45 Aligned_cols=478 Identities=37% Similarity=0.706 Sum_probs=461.1
Q ss_pred eeecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH------------------------------
Q 038395 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY------------------------------ 51 (480)
Q Consensus 2 ~~~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~------------------------------ 51 (480)
++.|+.||..+||.|+.+|+++|+++.|.++|++|++||+++||++|.+|
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 229 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH
Confidence 45688899999999999999999999999999999888888888887777
Q ss_pred ----------------------------------------HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 52 ----------------------------------------AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 52 ----------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+++|++++|.++|+.|+++|+++||+||.+|++.|++++|
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 4556666666666666778999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+. |++||..++++|+++|+++|++++|.++|++|.+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+.+|++..+|..|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhh
Q 038395 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEV 411 (480)
Q Consensus 332 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~ 411 (480)
+++++|+++|+++.|++||+++++.+|.|+.|+..||+.+++++.++++..+|++.||+||+.+++|++++++|+..+.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCceEEEecCCcccccccccccCCCCC
Q 038395 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGDYW 480 (480)
Q Consensus 412 ~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~s~~~~w 480 (480)
||||||++|||+++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-101 Score=823.25 Aligned_cols=473 Identities=42% Similarity=0.768 Sum_probs=455.4
Q ss_pred eeecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH------------------------------
Q 038395 2 VKFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY------------------------------ 51 (480)
Q Consensus 2 ~~~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~------------------------------ 51 (480)
++.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||++|.+|
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 46789999999999999999999999999999999998888888888887
Q ss_pred ----------------------------------------HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 52 ----------------------------------------AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 52 ----------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+++|++++|.++|++|.++|+++||+||.+|+++|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 5667777777777777778888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+. |+.+|..++|+|+++|+++|++++|.++|+.+ .
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 999999986 59999999999999999999999999999999999 99999999999999999999999999999999 8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999778999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 252 VNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
+++|+++|++++|.+++++|+++||..+|++|+.+|..+++.+.|+.+.+++.+++|+++..|..|.++|+..|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhh
Q 038395 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEV 411 (480)
Q Consensus 332 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~ 411 (480)
++++.|+++|++++||+|||++++++|.|+.|+.+||+.++++..|+++..+|++.||+||+..++++ ++++|+..+++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~-~~~~k~~~~~~ 790 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE-IEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc-cHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988844 77889999999
Q ss_pred hhHHHHHHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCceEEEecCCcccccccccccCCC
Q 038395 412 HSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFVNGTCSCGD 478 (480)
Q Consensus 412 ~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~~g~~s~~~ 478 (480)
||||||++|||++||+|+||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-60 Score=502.43 Aligned_cols=406 Identities=24% Similarity=0.376 Sum_probs=352.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 122 (480)
+||+||.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|.+|...|+.||..||++++.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 34555556677888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
++.|.++|..+.+. |+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+
T Consensus 304 ~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 304 ERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred hHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH
Q 038395 203 IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282 (480)
Q Consensus 203 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 282 (480)
.|+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~ 460 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTS 460 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999964 999999999999999999999999999999997 589999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCC-------
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN------- 355 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~------- 355 (480)
+|.+|.+.|+.++|..+|++|.+.-+++..+|..++.+|++.|.++.+.+++..|.+.|+.++.......++.
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999998766677778888888888888888888888777777776554322111100
Q ss_pred ---------------EEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhh---hhhhHHHH
Q 038395 356 ---------------KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSL---EVHSEKLA 417 (480)
Q Consensus 356 ---------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la 417 (480)
....++.++..|++.+++.+ ++++|++.|+.||..++...+..+.+.+.+ ....+.+.
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 00124667778888888887 788899999999999887777666555443 22334455
Q ss_pred HHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCc
Q 038395 418 VAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGR 456 (480)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~ 456 (480)
..+|+.++..+.. ++++.+..+|+..+|.++|.+|+.+
T Consensus 617 ~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 617 EKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred HHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 5677766655444 6999999999999999999999643
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.3e-59 Score=483.36 Aligned_cols=450 Identities=21% Similarity=0.347 Sum_probs=395.6
Q ss_pred cCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 038395 5 SLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMID 80 (480)
Q Consensus 5 g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 80 (480)
++.||..+|+.++.+|++.++++.|.+++..|. .||+.+||.++.+|+++|++++|.++|++|++||+++||+||.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 478999999999999999999999999999986 4899999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+. |+.+|..++++|+++|+++|+++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 161 DARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
+|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g 355 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-G 355 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999965 9
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchhHHHHHH
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-ANSGTYVLLSN 319 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~ 319 (480)
+.||..+|++|+++|+++|++++|.++|++|. +||..+|++||.+|+++|+.++|.++|++|.+.+. ++..+|..++.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999997 58999999999999999999999999999999764 57789999999
Q ss_pred HHHHcCChhHHHHHHHHHHh-CCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceec
Q 038395 320 IYAAIGNWDGVARVRTLMKE-KGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 398 (480)
+|.+.|++++|.++|+.|.+ .|+.|+...... ++.++...++.+++++.+ ++.+..||..++..
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l~r~G~~~eA~~~~-------~~~~~~p~~~~~~~ 499 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELLGREGLLDEAYAMI-------RRAPFKPTVNMWAA 499 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHHHhcCCHHHHHHHH-------HHCCCCCCHHHHHH
Confidence 99999999999999999976 588876544332 456677788888887743 34688899876555
Q ss_pred ccchhhhhhhhhhhhHHHHHHHhccCCCCCCeEEEEeeecccCCCcchhhhhccccCceEEE-------ecCCccccccc
Q 038395 399 DIGEKQKQNSLEVHSEKLAVAFGLISTQPGTSIKIVKNLRVCPDCHAVFKLISKFTGRKIMM-------RDRNRFHHFVN 471 (480)
Q Consensus 399 ~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~i~~-------~~~~~~h~~~~ 471 (480)
.+..+.+.+.+..-.+-....+++.+...+..+.+++.+..+|+..+|.+++..|..+.+-. .-.+..|.|-.
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 579 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEcc
Confidence 45544443332221111122244444444555668888999999999999999998886531 22345566654
Q ss_pred c
Q 038395 472 G 472 (480)
Q Consensus 472 g 472 (480)
|
T Consensus 580 ~ 580 (697)
T PLN03081 580 G 580 (697)
T ss_pred C
Confidence 4
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-57 Score=475.42 Aligned_cols=445 Identities=19% Similarity=0.263 Sum_probs=378.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMP----QRSLVSLTTMLTCYAKQGEVAAARVLFDDME----EKDVVCWNVM 78 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~l 78 (480)
.||..+||.|+.+|++.|+++.|.++|+.|. .||..+|++||.+|+++|++++|.++|++|. .||..+||+|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4999999999999999999999999999997 4899999999999999999999999999998 4899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCCCchhHHHHHHHHHHhCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS-RNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g 157 (480)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. .|+.||..+|++|+.+|+++|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999862 279999999999999999999
Q ss_pred CHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 158 SLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 158 ~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999986 57799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-C
Q 038395 234 TMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL-A 309 (480)
Q Consensus 234 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~-~ 309 (480)
.|.+. |+.|+..+|++||++|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.+. +
T Consensus 674 eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99964 99999999999999999999999999999999 7899999999999999999999999999999998764 5
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeC-------------CEEEEEEeCCC--CCCChHHHH
Q 038395 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELS-------------NKVHEFLAGDL--RHPKSKEIY 374 (480)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~-------------~~~~~~~~~~~--~~~~~~~~~ 374 (480)
+..+|..|+.+|.+.|++++|.+++++|.+.|+.|+..+....++ ..+..|-.+.. .....+++.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 778999999999999999999999999999999988754433221 00111111100 011123333
Q ss_pred HHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhhhhHHHHHHHhccCCCCCCe--EEEEeeecccCCCcchhhhhcc
Q 038395 375 MMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGLISTQPGTS--IKIVKNLRVCPDCHAVFKLISK 452 (480)
Q Consensus 375 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~~l~~c~~~~~~~~~~s~ 452 (480)
.++++|.+.|+.||..++...+.-..+.+. ....+.+-..+++.+.+++.. ..+++.+. ..-++|..++..
T Consensus 833 ----~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~--~~~~~A~~l~~e 905 (1060)
T PLN03218 833 ----MVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGFG--EYDPRAFSLLEE 905 (1060)
T ss_pred ----HHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhhc--cChHHHHHHHHH
Confidence 388999999999999877665522111111 122344555667666655533 23555441 112579999988
Q ss_pred ccCceEE
Q 038395 453 FTGRKIM 459 (480)
Q Consensus 453 ~~~~~i~ 459 (480)
|..+.|+
T Consensus 906 m~~~Gi~ 912 (1060)
T PLN03218 906 AASLGVV 912 (1060)
T ss_pred HHHcCCC
Confidence 8877554
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-54 Score=450.56 Aligned_cols=379 Identities=18% Similarity=0.266 Sum_probs=352.9
Q ss_pred ecC-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCHHHHHHH
Q 038395 4 FSL-DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE----KDVVCWNVM 78 (480)
Q Consensus 4 ~g~-~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~l 78 (480)
.|+ +++..+++.++..|.+.|.+++|.++|+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+ ||..+||+|
T Consensus 399 ~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 399 RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 453 578888999999999999999999999999999999999999999999999999999999974 899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.|+.+|++.|+
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHhcC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 159 LKDARLVFDRVN------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 159 ~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999995 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL- 308 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~- 308 (480)
+.|.+. |+.||..+|++++++|++.|++++|.+++++| ++.||..+|++||.+|++.|++++|.++|++|.+.+.
T Consensus 638 ~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999965 99999999999999999999999999999999 7889999999999999999999999999999988653
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCC
Q 038395 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388 (480)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 388 (480)
++..+|+.|+.+|++.|++++|.++|++|.+.|+.|+..+... ++.+....+..+++.+ ++.+|.+.|
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s--------LL~a~~k~G~le~A~~----l~~~M~k~G 784 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI--------LLVASERKDDADVGLD----LLSQAKEDG 784 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHH----HHHHHHHcC
Confidence 5678999999999999999999999999999999888765543 3455666788877776 788899999
Q ss_pred cccCCcce
Q 038395 389 YVPQTQIV 396 (480)
Q Consensus 389 ~~pd~~~~ 396 (480)
+.||..++
T Consensus 785 i~pd~~ty 792 (1060)
T PLN03218 785 IKPNLVMC 792 (1060)
T ss_pred CCCCHHHH
Confidence 99997644
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=3.6e-31 Score=205.65 Aligned_cols=106 Identities=61% Similarity=1.033 Sum_probs=96.4
Q ss_pred ceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhh--------hhhhhhhhHHHHH
Q 038395 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQK--------QNSLEVHSEKLAV 418 (480)
Q Consensus 347 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 418 (480)
+++|+++ |.|++|+.+||+. ++..++...||.|++..+.|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6789876 8999999999988 256677889999999999998877655 5688999999999
Q ss_pred HHhccCCCCCCeEEEEeee-cccCCCcchhhhhccccCceEEEecCCcccccc
Q 038395 419 AFGLISTQPGTSIKIVKNL-RVCPDCHAVFKLISKFTGRKIMMRDRNRFHHFV 470 (480)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~i~~~~~~~~h~~~ 470 (480)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.5e-21 Score=211.36 Aligned_cols=325 Identities=13% Similarity=0.098 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 83 (480)
..+++.+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444421 1233444445555555555555555555432 23445555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
+.|++++|++.|+++.+.. +.+...+..+..++...|++++|..+++.+.+. .+.+...+..++..+.+.|++++|.
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555432 223444555555555555555555555555542 2334455555555555555555555
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 164 LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 164 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
++++.+.+ .+...|..+...+.+.|++++|++.|+++...+ |+..++..+..++.+.|+.++|.+.++.+.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 765 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-- 765 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 55555543 244455556666666666666666666665532 33355555666666666666666666666642
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
.+.+...+..+...|.+.|++++|.+.|+++ ... +++.+++.+...+...|+ ++|...++++.+..|+++..+..+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 2334556666666777777777777777666 222 346666777777777777 6677777777777777766777777
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCC
Q 038395 319 NIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.+|...|++++|.+.++++.+.+.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777777777777776553
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=3.8e-21 Score=208.26 Aligned_cols=325 Identities=11% Similarity=0.055 Sum_probs=288.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 80 (480)
+.+...+..++..|.+.|++++|..+++.+.. .+..+|..+...|.+.|++++|...|+.+.+ .+...|..+..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44567788899999999999999999999863 4678899999999999999999999999864 36778999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
.|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|+++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998853 446788999999999999999999999999875 4667788899999999999999
Q ss_pred HHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 161 DARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 161 ~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
+|.+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+.+.+.
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 99999998864 555778889999999999999999999998863 456788888999999999999999999999853
Q ss_pred cCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 239 YAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 239 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
-+++...++.+...+.+.|+ ++|+.+++++ ...| +..++..+...+...|++++|...++++++.+|.++.++..
T Consensus 800 --~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 800 --APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred --CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 24567889999999999999 8899999988 4444 46778889999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 038395 317 LSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
++.+|.+.|++++|.+++++|.
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999986
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.5e-20 Score=183.74 Aligned_cols=294 Identities=11% Similarity=0.058 Sum_probs=237.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccC
Q 038395 48 LTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIG 121 (480)
Q Consensus 48 i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~ 121 (480)
...+...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4445678899999999999875 3 455788888899999999999999998887532222 245777888888999
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD--------VVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~--------~~~~~~li~~~~~~g~~~~A 193 (480)
+++.|..++..+.+. .+.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999998863 45567788899999999999999999998886421 12456677788899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC--ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 194 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+. .|+ ...++.++.+|.+.|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998753 223557777888899999999999999998853 343 456788999999999999999999998
Q ss_pred -CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH---cCChhHHHHHHHHHHhCCCccCCc
Q 038395 272 -KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA---IGNWDGVARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 272 -~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 347 (480)
...|+...+..+...+...|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5567877778899999999999999999999999988775 66666666654 568999999999999999999887
Q ss_pred e
Q 038395 348 C 348 (480)
Q Consensus 348 ~ 348 (480)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.2e-19 Score=177.39 Aligned_cols=285 Identities=16% Similarity=0.111 Sum_probs=239.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C------HHHHHHHHHHHHHcC
Q 038395 17 VDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEK-D------VVCWNVMIDGYAQHG 86 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g 86 (480)
...+...|++++|...|.++.+ | +..+|..+...+.+.|++++|..+++.+... + ...|..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4456678999999999999974 3 4567899999999999999999999988652 1 246889999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHhCCCHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A 162 (480)
++++|+++|.++.+. -+++..++..++..+...|++++|.+.++.+.+. +-.+. ...+..+...|.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999875 2456788999999999999999999999999875 32221 22456778889999999999
Q ss_pred HHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 163 RLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 163 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
.+.|+++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999999864 3466888899999999999999999999987643333467888999999999999999999999853
Q ss_pred CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHh---cCChhHHHHHHHHHHHc
Q 038395 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRL---HGNIALGEKIAEYLISQ 306 (480)
Q Consensus 240 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~---~~~~~~a~~~~~~~~~~ 306 (480)
.|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 577777889999999999999999999887 667999999988887764 55888999999988873
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5e-17 Score=167.34 Aligned_cols=318 Identities=10% Similarity=-0.046 Sum_probs=257.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCCh
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 88 (480)
.++..+.+.|++++|+.+++.... | +...+..++.+....|++++|...|+++.+ | +...|..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 455667788999999999988753 3 455677777778889999999999999875 4 567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 167 (480)
++|++.|+++.+. .| +...+..+..++...|++++|...++.+... .+.+...+..+ ..+...|++++|...++
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999885 44 5667888888999999999999999988764 23333344333 34788999999999999
Q ss_pred hcCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHhhhhc
Q 038395 168 RVNDK----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE----GRRFFNTMKDEY 239 (480)
Q Consensus 168 ~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~ 239 (480)
.+.+. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+.++ |...|+.+.+
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 87653 33344556778889999999999999998764 2346677778888999999986 7899998884
Q ss_pred CCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 240 AIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 240 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
..|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+..|.+...+..
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 3454 667888999999999999999999988 44564 6677888899999999999999999999999988766666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+..++...|+.++|...+++..+..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999886653
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=2.2e-16 Score=162.89 Aligned_cols=250 Identities=13% Similarity=0.032 Sum_probs=171.3
Q ss_pred CChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 86 GLANEALVLFRRMLAEK-VEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g-~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
+++++|++.|++....+ ..| +...+..+...+...|++++|...++...+. .+.+...|..+...|...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666655543 223 2345555566666777888888888777753 2334556777777788888888888
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 164 LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 164 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
..|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 88876643 356777778888888888888888888877642 223455666777777888888888888887743
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-h-------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS-V-------LWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.+.+...++.+...|...|++++|.+.|++. .+.|+. . .++..+..+...|++++|..+++++++.+|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 2233667777888888888888888888775 333321 1 112222233345888888888888888888877
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+..++.+|...|++++|.+.|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77888888888888888888888877554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=9.2e-18 Score=158.70 Aligned_cols=322 Identities=14% Similarity=0.166 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH------------
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV------------ 72 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~------------ 72 (480)
..+|+.+.+.+-..|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|....+ |+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 45788899999999999999999998865 3 467899999999999999888888877654 322
Q ss_pred -----------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 038395 73 -----------------------VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACGQIGALESGRW 128 (480)
Q Consensus 73 -----------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~ 128 (480)
+.|+.|...+-.+|+.-.|+..|++... +.|+ ...|..+...+...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 2344444444455555555555555544 2343 2345555555555555555555
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
.+...... -+....++..+...|...|.++.|...+++..+ | -...|+.|..++-..|+..+|.+.|.+....
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-- 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-- 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 55555432 122344445555555566666666666665544 2 2356777777777777777777777776653
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 038395 206 KPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWG 281 (480)
Q Consensus 206 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 281 (480)
.|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-+.|++++|...+++. .++|+ ...++
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 333 34566677777777777777777776652 3444 455677777777777777777777776 66776 56777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+...|...|+++.|.+.+.+++..+|.-+.++..|..+|-..|+..+|..-+++..+.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777777777888888888887777776544
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=9.3e-16 Score=158.02 Aligned_cols=316 Identities=8% Similarity=-0.038 Sum_probs=256.0
Q ss_pred HHhcCChHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHH
Q 038395 20 YARGGDVLSAEKLFATMPQR------SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANE 90 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 90 (480)
+.+..+++.---.|..-++. +..-...++..+.+.|++++|..+++.... | +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34566777666666665531 223455667788899999999999988764 3 45567777788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 91 ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 91 A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
|++.|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999852 335667888888899999999999999999974 45567788899999999999999999998764
Q ss_pred C--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH
Q 038395 171 D--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247 (480)
Q Consensus 171 ~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 247 (480)
. | +...+..+ ..+.+.|++++|...++.+......++...+..+..++...|+.++|...++.+... -+.+...
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 3 3 33444443 347889999999999999877643445555566677889999999999999999853 1334667
Q ss_pred HHHHHHHHHHcCCHHH----HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEE----AYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~----A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
+..+...|.+.|++++ |...|++. ...|+ ...+..+...+...|++++|...++++++..|+++..+..+..+|
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7889999999999986 78899887 55565 778999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 038395 322 AAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 322 ~~~g~~~~a~~~~~~m~~~~ 341 (480)
.+.|++++|...++.+.+.+
T Consensus 329 ~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=1.2e-16 Score=151.34 Aligned_cols=301 Identities=15% Similarity=0.169 Sum_probs=254.9
Q ss_pred hcCChHHHHHHHhhCC--CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCChHHHHHHH
Q 038395 22 RGGDVLSAEKLFATMP--QRSL-VSLTTMLTCYAKQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
..|++++|...+-+.. +|.. ++|+.|...+-..|++..|+.-|++... |+ ...|-.|...|...+.+++|+..|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 3455555555555433 2332 5788888888999999999999999876 43 458999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---
Q 038395 96 RRMLAEKVEPN-EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--- 171 (480)
Q Consensus 96 ~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--- 171 (480)
.+.... .|+ ...+..+...|-..|.++.|...+++.+.. -+.-...|+.|.+++-..|++.+|.+.+.+...
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 998874 564 567888888899999999999999999864 233467899999999999999999999998765
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYG 249 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 249 (480)
.-..+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 3557889999999999999999999999887 5555 4578889999999999999999999988 56888 77899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...+...|++.+|.+.++..+++.|+.+.+|-.++.+..-..+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999999887 77787 678899999999999999999999999999999999998888887777777
Q ss_pred hHHH
Q 038395 328 DGVA 331 (480)
Q Consensus 328 ~~a~ 331 (480)
.+-.
T Consensus 507 ~D~d 510 (966)
T KOG4626|consen 507 TDYD 510 (966)
T ss_pred cchH
Confidence 6533
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=2.9e-15 Score=164.63 Aligned_cols=369 Identities=11% Similarity=0.044 Sum_probs=220.7
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC---HHHHHHH---------
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD---VVCWNVM--------- 78 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~---~~~~~~l--------- 78 (480)
+...+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34555566777777777766542 3 455666666667777777777777666543 21 1122221
Q ss_pred ---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH---------
Q 038395 79 ---IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG--------- 146 (480)
Q Consensus 79 ---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 146 (480)
...+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 234556666777777776666642 224445555666666666777776666666653 11222221
Q ss_pred ---------------------------------HHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCCh
Q 038395 147 ---------------------------------TALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 147 ---------------------------------~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 190 (480)
..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 1233445567888888888877654 2 455666777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-------------------------------
Q 038395 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY------------------------------- 239 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------------------------------- 239 (480)
++|...|+++.+.... +...+..+...+...++.++|...++.+....
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 8888888877653211 22222222222333444444444443321100
Q ss_pred -------CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 240 -------AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 240 -------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..+++...+..+...|.+.|++++|.+.|++. ...| +...+..+...+...|+.++|+..++.+.+..|++
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 01334556677788888888999988888887 4445 47788888888888899999999999888888888
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
+..+..+..++...|++++|.++++.+.+..-...+......+-. ....-....++.+++...+++. |...|+.
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~---~~a~~~~~~G~~~~A~~~y~~A---l~~~~~~ 744 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR---DAARFEAQTGQPQQALETYKDA---MVASGIT 744 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH---HHHHHHHHcCCHHHHHHHHHHH---HhhcCCC
Confidence 878888888888899999999998888765422222110000000 0000123456677777665544 4455776
Q ss_pred cCCc
Q 038395 391 PQTQ 394 (480)
Q Consensus 391 pd~~ 394 (480)
|+..
T Consensus 745 ~~~p 748 (1157)
T PRK11447 745 PTRP 748 (1157)
T ss_pred CCCC
Confidence 6543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.9e-14 Score=151.38 Aligned_cols=331 Identities=9% Similarity=-0.007 Sum_probs=245.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDG 81 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~ 81 (480)
.+...+..+..++.+.|++++|..+|++..+ | +...+..++..+...|++++|...+++..+ | +.. |..+...
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 4455688899999999999999999998542 3 566788888899999999999999998764 4 455 8888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHH-----------------------------------
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALES----------------------------------- 125 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~----------------------------------- 125 (480)
+...|++++|+..++++.+. .| +...+..+..++...+..+.
T Consensus 126 l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999885 44 34444445555544444443
Q ss_pred -----------HHHHHHHHHHhCCCCCchh-HH----HHHHHHHHhCCCHHHHHHHHHhcCCCC---h-HHHHHHHHHHH
Q 038395 126 -----------GRWIHSYIENSRNIKVNVQ-VG----TALINMYSKCGSLKDARLVFDRVNDKD---V-VVWNSMIVGYA 185 (480)
Q Consensus 126 -----------a~~~~~~~~~~~~~~~~~~-~~----~~li~~y~~~g~~~~A~~~f~~m~~~~---~-~~~~~li~~~~ 185 (480)
|.+.++.+.+.....|+.. .+ ...+..+...|++++|++.|+++...+ . ..--.+...|.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 3333444443211122211 11 111234457799999999999988642 1 11122567899
Q ss_pred hcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----------CcCC---ccHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKP---SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA----------IEPK---VEHYG 249 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~ 249 (480)
..|++++|+..|+++.+..... .......+..++...|++++|.++++.+..... -.|+ ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 9999999999999987643211 124456667788999999999999999885311 0122 12445
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
.+...+...|++++|.++++++ ...| +...+..+...+...|++++|++.++++++..|++...+..++..+...|++
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 6778889999999999999998 3344 5788899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038395 328 DGVARVRTLMKEKG 341 (480)
Q Consensus 328 ~~a~~~~~~m~~~~ 341 (480)
++|..+++.+.+..
T Consensus 444 ~~A~~~~~~ll~~~ 457 (765)
T PRK10049 444 RQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999997653
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=1.3e-14 Score=159.46 Aligned_cols=320 Identities=14% Similarity=0.111 Sum_probs=237.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--CChh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHc
Q 038395 12 VSTSLVDLYARGGDVLSAEKLFATMPQ--RSLV-SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQH 85 (480)
Q Consensus 12 ~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 85 (480)
.+...+..+-.......|...+..... .|.. ........+...|++++|+..|++..+ | +...+..|...|.+.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 445555555555556777777766532 1221 123445667889999999999999764 4 678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 86 GLANEALVLFRRMLAEKVEP-NEVTA------------VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g~~p-d~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
|++++|+..|++..+..... +...+ ......+.+.|++++|...++.+.+. .+.+...+..+..+
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~ 394 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDV 394 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999998753221 11111 12234577899999999999999975 45567788889999
Q ss_pred HHhCCCHHHHHHHHHhcCC--C-ChHHHHH------------------------------------------HHHHHHhc
Q 038395 153 YSKCGSLKDARLVFDRVND--K-DVVVWNS------------------------------------------MIVGYAMH 187 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~--~-~~~~~~~------------------------------------------li~~~~~~ 187 (480)
|...|++++|++.|+++.+ | +...+.. +...+...
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 9999999999999998764 2 2323322 23345567
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHH---------------
Q 038395 188 GFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGC--------------- 250 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~--------------- 250 (480)
|++++|++.|++..+. .| +...+..+...+.+.|+.++|...++.+.+. .|+ ...+..
T Consensus 475 g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 475 GKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999998875 44 4556677888899999999999999998743 232 222222
Q ss_pred -----------------------------HHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038395 251 -----------------------------MVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301 (480)
Q Consensus 251 -----------------------------li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~ 301 (480)
+.+.+...|+.++|.++++.-+ ++...+..+...+...|++++|+..++
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233455566666666666332 345566778888999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++++..|+++.++..++.+|...|++++|.+.++...+.
T Consensus 628 ~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 628 RVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999987654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=9.2e-14 Score=146.28 Aligned_cols=325 Identities=11% Similarity=0.009 Sum_probs=251.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGY 82 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 82 (480)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+ | +...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344445566778889999999999998764 3445699999999999999999999999643 3 567788999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHH
Q 038395 83 AQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 162 (480)
...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++.+.+. .+.+...+..+...+.+.|..+.|
T Consensus 94 ~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHH
Confidence 9999999999999999886 233555 888888899999999999999999974 455666667777788777777766
Q ss_pred HHHHHhcCC---------------------------------------------------CChH-HH----HHHHHHHHh
Q 038395 163 RLVFDRVND---------------------------------------------------KDVV-VW----NSMIVGYAM 186 (480)
Q Consensus 163 ~~~f~~m~~---------------------------------------------------~~~~-~~----~~li~~~~~ 186 (480)
.+.++.... |+.. .+ ...+..+..
T Consensus 170 l~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 170 LGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 655553322 1100 00 011234567
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCC
Q 038395 187 HGFGKDALQLFNEMCRIRLK-PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~ 260 (480)
.|++++|+..|+++.+.+.. |+. .-..+..++...|++++|..+|+.+.+. .|. ......+..++.+.|+
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~---~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH---PETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHHHhccc
Confidence 78999999999999887532 433 2222567899999999999999998743 232 2345667778899999
Q ss_pred HHHHHHHHHhC-CCCC-------------C---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 261 VEEAYKLVMDM-KIEP-------------D---SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p-------------~---~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
+++|.++++.+ ...| + ...+..+...+...|+.++|+..++++....|.++..+..++.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999988 2223 2 23455677788999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 038395 324 IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 324 ~g~~~~a~~~~~~m~~~~ 341 (480)
.|++++|.+.+++..+..
T Consensus 406 ~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE 423 (765)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999887754
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.72 E-value=3.9e-14 Score=146.26 Aligned_cols=317 Identities=14% Similarity=0.052 Sum_probs=229.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCC
Q 038395 13 STSLVDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGL 87 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 87 (480)
+..+...|.+.|+++.|...|++.. .|+...|..+..+|.+.|++++|++.++...+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4455667777788888888887764 36667777777888888888888888877654 3 45577777788888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc-------------------------
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN------------------------- 142 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------- 142 (480)
+++|+.-|......+- .+......++...........+.. ..+. .+++
T Consensus 210 ~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~----~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKE----ILET--KPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHH----HHhc--CCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 8888877766554321 111111122221111101111111 1110 0010
Q ss_pred -----hhHHHHHHHHH------HhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 143 -----VQVGTALINMY------SKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 143 -----~~~~~~li~~y------~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
......++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 00001111111 1236789999999887642 4567888889999999999999999999874
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 038395 206 KPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWG 281 (480)
Q Consensus 206 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~ 281 (480)
.|+ ...|..+...+...|++++|...|+.+.+. .| +...|..+...|...|++++|...|++. ...|+ ...|.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 455 557888888899999999999999998843 34 4778889999999999999999999988 55564 67788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.+...+...|++++|+..++++++..|.++..+..+..+|...|++++|.+.+++..+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999999999999999999999987654
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=1.1e-12 Score=138.75 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=179.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVG 183 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~ 183 (480)
+...+..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++.. ++...+..+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 45556666655555 7777888877777654 35544444445555789999999999987754 344567777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 262 (480)
+.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...++...+ ..|+...+..+..++.+.|+++
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHH
Confidence 899999999999999988754 433 3333444455567999999999999884 3678888999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 263 EAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 263 ~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...+++. ...|+ ...+..+..++...|+.++|...++++++..|.++..+..+..+|...|++++|...+++..+.
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999988 55665 6778888889999999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 038395 341 G 341 (480)
Q Consensus 341 ~ 341 (480)
.
T Consensus 707 ~ 707 (987)
T PRK09782 707 I 707 (987)
T ss_pred C
Confidence 4
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.64 E-value=1.5e-12 Score=137.89 Aligned_cols=324 Identities=14% Similarity=0.063 Sum_probs=251.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C----ChhHHHHHHHHHHhcCC---HHHHHHH----------------
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R----SLVSLTTMLTCYAKQGE---VAAARVL---------------- 63 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~---~~~A~~~---------------- 63 (480)
|....-.+.-...+.|+.++|.++|..... + +...-+-++..|.+.+. ..+|..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 455555556666788999999999998754 1 23345577788877766 3333222
Q ss_pred ---------HhhcCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 038395 64 ---------FDDMEE---K--DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 64 ---------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
+..... + +...|..+..++.. +++.+|+..|.+.... .|+......+..++...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 111111 2 56678888888877 8999999988888775 57766555555666789999999999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHH---HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNS---MIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
++.+.. .+|+...+..+...+.+.|++++|...|++..+.+...++. +.......|++++|+..|++..+. .
T Consensus 532 ~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 532 WQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 998764 35555566777888999999999999999887643333333 333344559999999999999874 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 038395 207 PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTL 283 (480)
Q Consensus 207 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 283 (480)
|+...+..+..++.+.|+.++|...++..... .|+ ...++.+...+...|++++|.+.+++. ...| +...+..+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 77888999999999999999999999999843 555 667788888999999999999999987 5556 47889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..++...|++++|+..++++++..|++..+.........+..+++.|.+.+++-...++.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999888888899999999999999988777665553
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=7e-12 Score=130.17 Aligned_cols=322 Identities=11% Similarity=0.047 Sum_probs=224.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChh-HHHHH--HHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCCh
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQRSLV-SLTTM--LTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~l--i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 88 (480)
.++..+...|+.++|+..+++...|+.. .+..+ ...|...|++++|+++|+++.+ | |...+..++..|...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 6666777777777777777776655332 23333 3456666777777777777764 2 345566666777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
++|++.+.++... .|+...+..++..+...++..+|.+.++++.+. .+.+...+..++....+.|-...|.++..+
T Consensus 153 ~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 153 GVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 7777777777654 455555533333333345554577777777763 344556666666666666666555555443
Q ss_pred cCC-----------------------------------------------------CCh-HHHH----HHHHHHHhcCCh
Q 038395 169 VND-----------------------------------------------------KDV-VVWN----SMIVGYAMHGFG 190 (480)
Q Consensus 169 m~~-----------------------------------------------------~~~-~~~~----~li~~~~~~g~~ 190 (480)
-++ |.. ..|. =.+-++...|+.
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 321 000 0111 123456678899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----CcCCccHHHHHHHHHHHcCCHHHHHH
Q 038395 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA----IEPKVEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~ 266 (480)
.++++.|+.|...|.+....+-..+.++|...+.+++|..++..+....+ ..++......|.-+|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999888765566888999999999999999999999875422 12334445788999999999999999
Q ss_pred HHHhC-CCC-------------CC---HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 267 LVMDM-KIE-------------PD---SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 267 ~~~~m-~~~-------------p~---~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
+++++ ... || ......++..+...|++.+|++.++++....|.|......+.+++...|...+
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99988 111 22 22344567778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038395 330 VARVRTLMKEK 340 (480)
Q Consensus 330 a~~~~~~m~~~ 340 (480)
|.+.++.....
T Consensus 469 A~~~~k~a~~l 479 (822)
T PRK14574 469 AEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhhh
Confidence 99999776544
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=3.9e-15 Score=138.32 Aligned_cols=256 Identities=16% Similarity=0.153 Sum_probs=112.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA-VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
.+...+.+.|++++|++++.+......+|+...| ..+...+...++.+.|.+.++.+.+. + +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence 4466777888899998888665544324544444 44445566788889999998888865 2 2256667777777 68
Q ss_pred CCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999988877643 466778888888999999999999999987533 3456777888888899999999999999
Q ss_pred HHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 233 NTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 233 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+...+. .|+ ....+.++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...+++..+..|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999854 565 777888999999999999988888776 22356678899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
|+.....++.++...|+.++|.+++++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987664
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=1.8e-11 Score=127.10 Aligned_cols=324 Identities=10% Similarity=0.018 Sum_probs=242.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A 91 (480)
...|...|++++|..+|+++.+ | |...+..++..|...++.++|++.++++.. |+...+-.++..+...++..+|
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 5688888999999999999875 3 456777888999999999999999999986 4444454444444446667679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH------------------------------------------
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI------------------------------------------ 129 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~------------------------------------------ 129 (480)
++.++++.+.. +-+...+..+..+..+.|....|.++
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 99999999863 22455555666665555543333322
Q ss_pred ------HHHHHHhCCC-CCchhH-HHH---HHHHHHhCCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCChHHHH
Q 038395 130 ------HSYIENSRNI-KVNVQV-GTA---LINMYSKCGSLKDARLVFDRVNDK----DVVVWNSMIVGYAMHGFGKDAL 194 (480)
Q Consensus 130 ------~~~~~~~~~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~ 194 (480)
++.+....+- ++.... ..+ .+-++.+.|++.++.+.|+.+... ...+--+...+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 2222221122 222112 122 344677889999999999999853 2235567889999999999999
Q ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC----------CcCC---ccHHHHHHHHHH
Q 038395 195 QLFNEMCRIR-----LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA----------IEPK---VEHYGCMVNLLS 256 (480)
Q Consensus 195 ~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~ 256 (480)
.+|+.+.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999996643 122344467889999999999999999999986311 0122 223455678889
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 257 RAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 257 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..|++.+|++.++++ ...| |...+..+...+...|.+..|++.++.+..++|++..+....+..+...|+|++|..+.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999 3334 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 038395 335 TLMKEKG 341 (480)
Q Consensus 335 ~~m~~~~ 341 (480)
+.+.+..
T Consensus 508 ~~l~~~~ 514 (822)
T PRK14574 508 DDVISRS 514 (822)
T ss_pred HHHHhhC
Confidence 8876553
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=5.4e-12 Score=125.28 Aligned_cols=318 Identities=15% Similarity=0.168 Sum_probs=249.4
Q ss_pred HHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 038395 18 DLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDME---EKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+.....|++++|.+++.++.. .+...|-+|...|-+.|+.+++...+-... ..|..-|-.+.....+.|++++|
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 333345999999999999875 356889999999999999999998775543 35778999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH----HHHHHHHHhCCCHHHHHHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG----TALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~li~~y~~~g~~~~A~~~f~ 167 (480)
.-.|.+.++.. +++...+---...|-+.|+...|..-+.++.+. .-+.|..-. -..+..|...++-+.|.+.++
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~-~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL-DPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999873 556666667778899999999999999999975 222222222 334566777788899999988
Q ss_pred hcCC--C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHH
Q 038395 168 RVND--K---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF--------------------------IGLL 216 (480)
Q Consensus 168 ~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------------------------~~ll 216 (480)
.... . +...+|.++..|.+...++.|......+......+|..-+ ..+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 8765 2 4457889999999999999999999888773222222211 1222
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCC--cCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcC
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAI--EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~ 291 (480)
-++.+....+....+......+ .+ .-+...|.-+.++|.+.|++.+|+++|..+ +...+...|-.+...|...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3344555555555555555432 43 334678889999999999999999999998 22235789999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.++.|.+.+++++...|++..+-..|...|...|+.++|.+++..|.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999876
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.3e-11 Score=111.23 Aligned_cols=323 Identities=17% Similarity=0.206 Sum_probs=231.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhH-------HHHHHHHH--------------------------HhcCC
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVS-------LTTMLTCY--------------------------AKQGE 56 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-------~~~li~~~--------------------------~~~g~ 56 (480)
+.+-|.|+.+-+ .|.+.++.-+++.|.+.++.. .-.|+..| .|.|.
T Consensus 116 V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 456788888774 678999999999998654321 11222222 33444
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 57 VAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
+.+ -+|+.. .+...++.+||.+.++-...++|.++|++-.....+.+..+|+.+|.+.+ +..++.+..+|.+.
T Consensus 195 vAd--L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 195 VAD--LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQ 267 (625)
T ss_pred HHH--HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHh
Confidence 433 444444 34667899999999999999999999999998888999999999998854 33448899999998
Q ss_pred CCCCCchhHHHHHHHHHHhCCCHHHHHHHHH----hcC----CCChHHHHHHHHHHHhcCChHH-HHHHHHHHHH----c
Q 038395 137 RNIKVNVQVGTALINMYSKCGSLKDARLVFD----RVN----DKDVVVWNSMIVGYAMHGFGKD-ALQLFNEMCR----I 203 (480)
Q Consensus 137 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~ 203 (480)
.+.||..++|+++...++.|+++.|++.+- +|+ +|...+|..+|..+.+.+++.+ |..++.+.+. .
T Consensus 268 -km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 268 -KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred -hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 999999999999999999999888766554 444 4788999999999999888754 4444444443 2
Q ss_pred CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC---CcCC---ccHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038395 204 RLKP----SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA---IEPK---VEHYGCMVNLLSRAGQVEEAYKLVMDM-K 272 (480)
Q Consensus 204 g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 272 (480)
.++| |...|...+..|.+..+.+.|.++..-+....+ +.|+ ..-|..+.++.++...++.-...++.| |
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333 456678889999999999999998776653211 2233 234677888888999999999999998 2
Q ss_pred --CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc---------------------CCCCc------------------
Q 038395 273 --IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ---------------------NLANS------------------ 311 (480)
Q Consensus 273 --~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~---------------------~~~~~------------------ 311 (480)
.-|+..+...+++|.-..+.++-.-+++..++.. .|..+
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3477777777888777777666544444433321 22212
Q ss_pred ----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 312 ----------------GTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 312 ----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
......+-.+.+.|+.++|.+++..+.+++
T Consensus 507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 123345556778999999999998886554
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=2.6e-11 Score=118.04 Aligned_cols=275 Identities=11% Similarity=0.057 Sum_probs=208.4
Q ss_pred cCCHHHHHHHHhhcCCC--CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHH
Q 038395 54 QGEVAAARVLFDDMEEK--DVV-CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV--AVLSACGQIGALESGRW 128 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~ 128 (480)
.|+++.|++.+...++. +.. .|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999887653 223 3333344457899999999999999874 56654433 33567888999999999
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---h--------HHHHHHHHHHHhcCChHHHHHHH
Q 038395 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD---V--------VVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
.++...+. .+.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999874 46678888999999999999999999999887531 1 13344444444445556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038395 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD 276 (480)
Q Consensus 198 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 276 (480)
+.+-+. .+.+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.++.. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665332 3456778888999999999999999999888753 444422 2233334569999999999887 44564
Q ss_pred -HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 277 -SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 277 -~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+.....+...|...+++++|.+.|+.+.+..|++ ..+..+..++.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999876 4678999999999999999999987643
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.5e-11 Score=116.36 Aligned_cols=276 Identities=13% Similarity=0.011 Sum_probs=216.1
Q ss_pred cCChHHHHHHHhhCCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHH--HHHHHHHHcCChHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQR--SLVS-LTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWN--VMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 95 (480)
.|+++.|++.+...++. ++.. |.....+..+.|+++.|...|.++.+ |+....- .....+...|++++|++.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 59999999999887653 2333 33334444899999999999999876 4433222 3366889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch-------hHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV-------QVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 96 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
+++.+.. +-+...+..+...+.+.|+++.+..++..+.+. +..++. .+|..++....+..+.+...++++.
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9998864 336678888899999999999999999999987 433222 2334445545555667778888888
Q ss_pred cCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 169 VND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 169 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
++. .+......+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.+ +-|+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCH
Confidence 765 47788899999999999999999999998874 455422 23344456699999999999988652 3345
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
....++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66889999999999999999999998 77899999999999999999999999999998764
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1.1e-10 Score=114.17 Aligned_cols=277 Identities=12% Similarity=0.058 Sum_probs=152.8
Q ss_pred hcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHH
Q 038395 53 KQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE--VTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~ 127 (480)
..|+++.|.+.+.+..+ |+ ...+-.....+.+.|++++|.+.|.+..+. .|+. .............|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 46677777776666543 22 223333345555667777777777666553 2333 22233355566667777777
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHH----HHHHHHHhcCChHHHHHHHHHH
Q 038395 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWN----SMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m 200 (480)
..++.+.+. .|.+..+...+...|...|++++|.+.+....+. +...+. ....++...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777776653 2445556666667777777777777766666532 222221 1111112223333333444444
Q ss_pred HHcCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHH-HHHHHHH--HHcCCHHHHHHHHHhC-CC
Q 038395 201 CRIRL---KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY-GCMVNLL--SRAGQVEEAYKLVMDM-KI 273 (480)
Q Consensus 201 ~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~m-~~ 273 (480)
..... +.+...+..+...+...|+.++|.+.++...+. .|+.... -.++..+ ...++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 43211 125556666666777777777777777776643 3433210 0122222 2345666666666555 33
Q ss_pred CCC-H--hHHHHHHHHHHhcCChhHHHHHHH--HHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 274 EPD-S--VLWGTLLGACRLHGNIALGEKIAE--YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 274 ~p~-~--~~~~~li~a~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.|+ + ....++...+.+.|++++|.+.|+ ...+..|++. .+..+...+.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333 2 455566777777777777777777 3444555543 4557777777777777777777664
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.1e-13 Score=128.67 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHhcCChHHHHHHHhhC-CC----CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCh
Q 038395 17 VDLYARGGDVLSAEKLFATM-PQ----RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m-~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 88 (480)
..++.+.|++++|+++++.. .. .|..-|..+.......++++.|.+.++++... +...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 44555555555555555321 11 12333444444444455555555555555432 12234444443 445555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
++|.+++.+..+. .++...+..++..+.+.++++.+..+++.+......+.
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------- 144 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD--------------------------- 144 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---------------------------
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC---------------------------
Confidence 5555554443332 13333344444444444444444444444433212233
Q ss_pred cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH
Q 038395 169 VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247 (480)
Q Consensus 169 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 247 (480)
+...|..+...+.+.|+.++|++.|++..+. .|+ ......++..+...|+.+++.+++....+.. +.++..
T Consensus 145 ----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~ 216 (280)
T PF13429_consen 145 ----SARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDL 216 (280)
T ss_dssp -----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCH
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHH
Confidence 3444555555555555555555555555553 232 3444455555555555555555555555321 334445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLI 304 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~ 304 (480)
+..+..+|...|+.++|+.+|++. ...| |+.+...+..++...|+.++|.++.+++.
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555566666666666665555 2223 44555555556666666666665555543
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.1e-11 Score=119.61 Aligned_cols=247 Identities=13% Similarity=0.072 Sum_probs=195.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CCchhHHHHHHHHHHhCCCHHHHHH
Q 038395 86 GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARL 164 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~ 164 (480)
-+..+|+.+|...... +.-.......+..+|..++++++++.+|+.+.+.... ..+..+|.+.+..+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4567899999885553 3434567778889999999999999999999875222 2256778887766554333322222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC
Q 038395 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243 (480)
Q Consensus 165 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 243 (480)
-+-.+......+|-++.+.|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22223334678999999999999999999999999887 456 67888888888888899999999998876 46
Q ss_pred CccHHHHH---HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 244 KVEHYGCM---VNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 244 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
++.+|++. .-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|+++++++..++|.++-.-..-+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 67777764 46788999999999999988 7777 4777788888899999999999999999999999988888888
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 038395 319 NIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+...++.++|+..++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999864
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.3e-11 Score=119.12 Aligned_cols=272 Identities=14% Similarity=0.049 Sum_probs=145.0
Q ss_pred HHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHH
Q 038395 57 VAAARVLFDDMEE--KDV-VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP----NEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 57 ~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
..+|...|+.+++ +|. .....+..+|...+++++|.++|+...+. .| +..+|++++=-+-+ +.++.+
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3455555555432 222 22334455555556666666666555543 22 33455554433211 111112
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 130 HSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
+.+-.-. -.+..+.+|.++.+.|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2111111 22334556666666666666666666666665542 334555555555556666666666665533 22
Q ss_pred CCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 038395 207 PSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGT 282 (480)
Q Consensus 207 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 282 (480)
|.. ..|-.+...|.+.++++.|+-.|+.+. .+.|. ......+...+-+.|+.|+|++++++. .+.| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 221 233445555666666666666666665 33443 344445555666666666776666666 2222 3333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
-+..+...+++++|+..++++.+.-|++...|..+...|.+.|+.+.|..-|.-+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4445555666777777777777777777667777777777777777776666555443
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.8e-10 Score=111.42 Aligned_cols=277 Identities=12% Similarity=0.028 Sum_probs=168.2
Q ss_pred hcCChHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH--HHHHHHHHHHHHcCChHHHHHH
Q 038395 22 RGGDVLSAEKLFATMPQ--RSL-VSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV--VCWNVMIDGYAQHGLANEALVL 94 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~ 94 (480)
..|+++.|.+.+.+..+ |+. ..+-....++.+.|+.+.|.+.|++..+ |+. ...-+....+.+.|++++|++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35777777777776653 222 2333444556667777877777777532 332 2333346667777778888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHH-------HHHHHHHhCCCHHHHHHHHH
Q 038395 95 FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT-------ALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 95 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~g~~~~A~~~f~ 167 (480)
++++.+.. +-+...+..+...+...|+++.+.+.+..+.+. +..+...... .++..-......+...+.++
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777753 225556667777777778888777777777775 4333222211 11111112222344444555
Q ss_pred hcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhhhcCC
Q 038395 168 RVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF---IGLLSACAHAGLVNEGRRFFNTMKDEYAI 241 (480)
Q Consensus 168 ~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 241 (480)
..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--- 328 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--- 328 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---
Confidence 5543 36677777777777788888888877777764 3333311 11111223346667777777766643
Q ss_pred cCCc---cHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 242 EPKV---EHYGCMVNLLSRAGQVEEAYKLVMD--M-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 242 ~p~~---~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.|+. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3432 3445667777777888888877773 2 5567777777777777777888878777777654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.4e-09 Score=100.75 Aligned_cols=328 Identities=11% Similarity=0.048 Sum_probs=224.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH-HHHHHHHHHHHcC
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV-CWNVMIDGYAQHG 86 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g 86 (480)
-|.+.+=.-...+-+.|....|.+.|......-+.-|.+-+....-.-+.+.+..+-...+..+.. .=--+..+|-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344433333344445556666666665554433344444443333334444444433333322111 1112334555566
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCHHH-HHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKD-ARL 164 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~-A~~ 164 (480)
+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+.+.+...... |..+|+.++-.-..+..+.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 7788888888887777665555555555556677889999999999887522211 45566665533222222221 222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC
Q 038395 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK 244 (480)
Q Consensus 165 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 244 (480)
++ .+.+--+.|.-.+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.+.+ -.+.|
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~D 397 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRD 397 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchh
Confidence 32 222223456666777888889999999999999885422 346677888899999999999999999984 22456
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.++...+-.+...+..|+..|-
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 778899999999999999999999998 6666 58899999999999999999999999999988877789999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 038395 323 AIGNWDGVARVRTLMKE 339 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~ 339 (480)
+.++.++|...+++-.+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999988765
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1e-11 Score=122.81 Aligned_cols=265 Identities=16% Similarity=0.175 Sum_probs=194.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 172 (480)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-. ..+.+..+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-------CC
Confidence 35567888899999999999999999999999999 99999887 88999999999999999999988775 67
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
...+|+.|..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHH
Confidence 88899999999999999865 333332 233455566667766666666665543334455543 455
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG-NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
....-.|.++.+++++..+|..........+++-+.... .+++-..+.+...+ ..++.+|..++..-..+|+.+.|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHH
Confidence 666778889999999988864332222222344443332 23333333333333 356689999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCCcceec
Q 038395 332 RVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQTQIVLH 398 (480)
Q Consensus 332 ~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 398 (480)
.++.+|+++|++..+.+.|-.+ .|. +...-++.+.+-|++.|+.||..++..
T Consensus 225 ~ll~emke~gfpir~HyFwpLl--------~g~-------~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLL--------LGI-------NAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhh--------hcC-------ccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 9999999999999999988743 331 222345557889999999999886543
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6.9e-10 Score=102.31 Aligned_cols=203 Identities=13% Similarity=0.116 Sum_probs=158.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
.|++++|...+.+.... . ..-+...-.+.-.+-+.|++++|+..|-++.. .++.+.-.+.+.|....++.+|+++
T Consensus 503 ngd~dka~~~ykeal~n-d-asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNN-D-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcC-c-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 46788888888877753 1 11112222233357778899999999887653 5677777788888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 038395 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP 275 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 275 (480)
+.+.... ++.|...+..|...|-+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|..+|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8776543 455677888899999999999999887655432 34567888888999999999999999999998 5789
Q ss_pred CHhHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 276 DSVLWGTLLGAC-RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 276 ~~~~~~~li~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+..-|..++..| ++.|++..|..+++.+.+.-|.+......|++.+...|..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999988766 5679999999999999999999998988999988887753
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.8e-09 Score=97.80 Aligned_cols=331 Identities=12% Similarity=0.081 Sum_probs=206.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAARVLFDDME----EKDVVCWNVMI 79 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 79 (480)
-...++..+|.+.+|.-..+.|+.++.+-.. -+..++|.+|.+-+-.-+ .++..+|. .||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 3456777777777777777777777776653 244566777665432222 44444444 37777777777
Q ss_pred HHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHHh-C--CC----CCchhHHH
Q 038395 80 DGYAQHGLANE----ALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALES-GRWIHSYIENS-R--NI----KVNVQVGT 147 (480)
Q Consensus 80 ~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~-~--~~----~~~~~~~~ 147 (480)
++.++.|+++. |++++.+|++-|+.|...+|..+|..+.+-++..+ +..++..+... . .+ +.|...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 77777776653 45566777777777777777777777776666533 33333333321 0 12 22445556
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038395 148 ALINMYSKCGSLKDARLVFDRVNDK-----------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 216 (480)
..|+.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 6667777777777777765544321 12235566677788888888888888888776778888888899
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC---------CHHH-----HHHHH-------HhC-CCC
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG---------QVEE-----AYKLV-------MDM-KIE 274 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---------~~~~-----A~~~~-------~~m-~~~ 274 (480)
.|..-.+.++-..+++..+.. +|-.-....-.-+...+++.. ++.. |..++ .+| ...
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 988888888887777777663 342222222222222223222 0000 11111 122 223
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCch--hHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQN---LANSG--TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
-.....+.+...+.+.|..++|-+++..+.+.+ |..+. +..-|++.-...++...|..+++-|...+.+
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 345566777777889999999999999997643 32221 2334556666778889999999999877764
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.7e-09 Score=99.10 Aligned_cols=294 Identities=14% Similarity=0.122 Sum_probs=199.1
Q ss_pred HhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 038395 52 AKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
-..|++..|.++|++-. +|+..+|++.|..=.+-...+.|..+|++..- +.|+..+|.-....=.+.|....++.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455555555555432 37777777777777777777777777777665 357777776666666667777777777
Q ss_pred HHHHHHhCCCC-CchhHHHHHHHHHHhCCCHHHHHHHHHhc----CC---------------------------------
Q 038395 130 HSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRV----ND--------------------------------- 171 (480)
Q Consensus 130 ~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m----~~--------------------------------- 171 (480)
+.......|.. .+...+++....=.++..++.|.-+|.-. ++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 77766531211 11223333333333445555555544321 11
Q ss_pred ----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHH---HHHHHccCCHHHHHHH
Q 038395 172 ----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-------ITFIGL---LSACAHAGLVNEGRRF 231 (480)
Q Consensus 172 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~l---l~a~~~~g~~~~a~~~ 231 (480)
-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+ +-.=....+++.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 03345666666666778888888888887764 45522 112111 1111345788888888
Q ss_pred HHHhhhhcCCcCCccHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 232 FNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 232 ~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
++...+ -++....|+.-+--+|+ ++.++..|.+++... |..|-..+|...|..-.+.++++....++++.++.
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 888874 34445677766655554 678999999999877 88899999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceee
Q 038395 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSS 350 (480)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 350 (480)
+|.+..+|.-.+..-...|+++.|..+|+...+.....-|..-|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999999999999888765433344333
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.5e-12 Score=85.85 Aligned_cols=50 Identities=32% Similarity=0.549 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038395 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119 (480)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 119 (480)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=3.5e-10 Score=101.71 Aligned_cols=199 Identities=14% Similarity=0.113 Sum_probs=155.0
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.....+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3455677777888888888888888877653 245677778888888888888888888887753 234556677777
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
.+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888889999999998888753222223456677788889999999999999887 3344 46678888889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...+++..+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999887777778888889999999999999988877543
No 43
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2.2e-12 Score=84.99 Aligned_cols=50 Identities=36% Similarity=0.580 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.5e-09 Score=96.16 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=95.8
Q ss_pred CChHHHHHHHhhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhcCC-CCH------HHHHHHHHHHHHcCChHHHHH
Q 038395 24 GDVLSAEKLFATMPQRSLV---SLTTMLTCYAKQGEVAAARVLFDDMEE-KDV------VCWNVMIDGYAQHGLANEALV 93 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~ 93 (480)
.+.++|.++|-+|.+-|.. +--+|.+.|-+.|.+|.|+++.+.+.+ ||. ...-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3455555555555543322 233455555555666666665555443 321 123344445555555566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 038395 94 LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 94 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m 169 (480)
+|..+.+.| .--......++..|-...++++|..+-..+.+. +-.+. ...|.-|...+.-..+++.|..++.+.
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555555432 122334445555555555555555555555544 22211 112223333333344444444444444
Q ss_pred CCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 170 NDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 170 ~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+. .+..--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 331 1222222334444445555555555544443322222334444444444555554444444444
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=1.1e-08 Score=98.82 Aligned_cols=300 Identities=11% Similarity=0.034 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 119 (480)
.|-.....+-..|++..|..++...-+ | +...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 344444444555666666665555443 2 3445666666666666666666666666553 4455555444444444
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
+++.++|+++++...+. ++.-...|-.+...|-..++++.|++.|..=.+ | .+..|-.|...--+.|..-.|..+
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 56666666666666653 444455666666666666677777666655443 2 345566666666666677777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 038395 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD 276 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 276 (480)
|++.+..+. -|...|...|..=.+.|..+.|..+..+..++ ++.+...|..-|.+..+.++-..+.+.+++.. .|
T Consensus 742 ldrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d 816 (913)
T KOG0495|consen 742 LDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD 816 (913)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CC
Confidence 776665542 25566667777777777777777777666643 34445566666666666666555555555543 45
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEe
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL 353 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 353 (480)
+...-.+...+-....++.|...|.+.++.+|++-.+|.-+...+...|.-++-.+++....... |..|..|..+
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 56666677778888899999999999999999999999999999999999999999998887653 5556667543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=8.7e-09 Score=94.15 Aligned_cols=278 Identities=12% Similarity=0.108 Sum_probs=146.5
Q ss_pred cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 038395 54 QGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.|-.++.+..+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555554332 1222333333444445555555555555544322233333334444455555555555555
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHH
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-----------VVVWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
..+.+. -+.++.+.......|.+.|++.....++.++.+.. ..+|+.++.-....+..+.-...++.
T Consensus 177 ~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 555442 23344455555555555555555555555555421 12344444333333333322223333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCH
Q 038395 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDS 277 (480)
Q Consensus 200 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~ 277 (480)
.-.. .+-+...-.+++.-+...|+.++|.++.....+. +..|+. +..-...+-++...-.+..+.- ...-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 2221 2333344444455555556666666655555533 444431 1111122233333322222222 111235
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+.+|...|.+++.+.+|...|+..++..|.. .+|..+..++.+.|+..+|.+++++-.-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 778889999999999999999999888888765 58999999999999999999998877643
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.30 E-value=8.4e-09 Score=99.48 Aligned_cols=303 Identities=15% Similarity=0.114 Sum_probs=123.7
Q ss_pred cCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFR 96 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 96 (480)
..+.++|+.++.+..+ | +...|.+ |++...++.|.++++...+ .+...|.+-...--++|+.+...++..
T Consensus 389 lE~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ccChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3445556666655443 1 2233333 3334445556666555543 245555555555555566555555544
Q ss_pred HH----HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC--chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 97 RM----LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV--NVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 97 ~m----~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+- ...|+..+..-|..=..+|-..|..-....+....+.. |+.. -..+|+.-.+.|.+.+.++-|+.+|....
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 32 23344444444444444444444444444444444433 2221 12233333444444444444444444333
Q ss_pred C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH
Q 038395 171 D---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH 247 (480)
Q Consensus 171 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 247 (480)
+ .+...|...+..--.+|..++...+|++.... ++-....|......+-..|++..|+.++..+.+. .+.+...
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseei 620 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEI 620 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHH
Confidence 2 12333333333333334444444444443332 1112222323333333334444444444333321 0112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
|-+-+........++.|..+|.+. ...|+..+|.--+......++.++|.+++++.++.-|+-...|..+...+-..++
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH
Confidence 333333333344444444444333 2233333333333333333344444444444444333333334444444444444
Q ss_pred hhHHHHH
Q 038395 327 WDGVARV 333 (480)
Q Consensus 327 ~~~a~~~ 333 (480)
.+.|.+.
T Consensus 701 ie~aR~a 707 (913)
T KOG0495|consen 701 IEMAREA 707 (913)
T ss_pred HHHHHHH
Confidence 4433333
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.30 E-value=6.2e-09 Score=104.72 Aligned_cols=331 Identities=11% Similarity=0.042 Sum_probs=191.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--HHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQRS------LVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD--VVCWNV 77 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~--~~~~~~ 77 (480)
-|+.+.|.|.+.|.-.|+++.+..+...+...+ ..+|-.+..+|-..|+++.|...|.+... +| +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 456667777777777777777777766665422 13466677777777777777777776654 22 334455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----ALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
|...|.+.|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..+.....+. .+.|...|..+..+|
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHH
Confidence 667777777777777777777664 2334456666666565553 345555555555542 344555555555555
Q ss_pred HhCCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH-----H-HHHHHH
Q 038395 154 SKCGSLKDARLVFDRVN--------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---RLKPSD-----I-TFIGLL 216 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~-t~~~ll 216 (480)
-...-+.. +.+|.... .......|.+...+...|.+.+|...|...... -..+|. . +--.+.
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44332221 33332221 234556666666666677777777777665443 122222 1 111222
Q ss_pred HHHHccCCHHHHHHHHHHhhhhc--------------------------------CCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEY--------------------------------AIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~--------------------------------~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
...-..++.+.|.+.|..+.+.+ ....++..++.+.+.+.+...+..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 23334445555555555555431 1112222233333333333333333
Q ss_pred HHHHHhC----CCCCCHhHHHHHHHHHH------------hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChh
Q 038395 265 YKLVMDM----KIEPDSVLWGTLLGACR------------LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 265 ~~~~~~m----~~~p~~~~~~~li~a~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (480)
.+-|..+ -..+|+.+.-+|.+.|. ..+..++|+++|.++++.+|.|..+-+.+..+++..|++.
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 3322222 12245554444554442 2235678999999999999999888888999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 038395 329 GVARVRTLMKEKGV 342 (480)
Q Consensus 329 ~a~~~~~~m~~~~~ 342 (480)
+|..+|.+.++...
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=2.2e-08 Score=91.56 Aligned_cols=275 Identities=12% Similarity=0.054 Sum_probs=224.4
Q ss_pred cCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCChHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK----DVVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.|-+.+.+..++ +....-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6899999999987654 23345666666778899999999999998764 4556777788899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch-------hHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 96 RRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV-------QVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 96 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
.++.+.+ +-+.........+|.+.|++.....+...+.+. +.-.+. .+|+.+++=....+..+.-...++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9998864 346778889999999999999999999999998 765553 3566677666666666666667777
Q ss_pred cCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 169 VND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 169 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
.+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|.. ..+-.+.+.++.+.-.+..+.-.+.++-.|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 774 36777778899999999999999999999988777762 223356777888887777777776655555
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+.+..++.+.|+.+.|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67889999999999999999999987 8889999999999999999999999999998875
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.9e-09 Score=98.33 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=143.6
Q ss_pred HhCCCHHHHHHHHHhcCCCChHHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVNDKDVVVWNSMI---VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
...|++++|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3468999999999998887765444333 3466789999999999887653 34466777788888999999999999
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
++.+... -++.|+...+-|.+.|-+.|+-..|.+..-+- ..- -+..+..-|..-|....-.+++..+|+++.-..|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9988762 44556888999999999999999999875444 333 3667777777778888888999999999988888
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
....-...+.+++.+.|++..|..+++....+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76544445666678899999999999998654
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9.3e-09 Score=96.04 Aligned_cols=211 Identities=15% Similarity=0.114 Sum_probs=160.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
|+.-.+.+-++..++. .+.+...|.-+..+|....+-++..+.|+...+ .|..+|..-...+.-.+++++|..=|
T Consensus 340 g~~~~a~~d~~~~I~l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKL--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhc--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4555555566666543 223334466677778888888888888887764 35566766666677778888999989
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 038395 198 NEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP 275 (480)
Q Consensus 198 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 275 (480)
++.+.. .| +...|.-+-.+.-+.+.++++...|+...++ ++..++.|+.....+...+++++|.+.|+.. .++|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 888774 44 3456777777777889999999999999964 4556889999999999999999999999886 4444
Q ss_pred C---------HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 276 D---------SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 276 ~---------~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+ +.+-..++-.-. .+++..|..+++++++++|....+|..|...-...|+.++|.++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 222222322222 3899999999999999999998999999999999999999999998764
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2.4e-09 Score=96.27 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
.+..+...|...|++++|.+.|++..+.. +.+...+..+...+...|+++.|...++...+. .+.+...+..+...|
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 34444444444444444444444443321 112333344444444444444444444444432 122333444444444
Q ss_pred HhCCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 154 SKCGSLKDARLVFDRVND-----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
...|++++|.+.|++... .....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 444555555444444432 122334444445555555555555555554432 11233444455555555555555
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
...++..... .+.+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555432 122333444445555555555555555444
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=5.4e-09 Score=92.72 Aligned_cols=288 Identities=12% Similarity=0.064 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHhhcCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHH
Q 038395 54 QGEVAAARVLFDDMEEKDVVCW---NVMIDGYAQHGLANEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~ 127 (480)
..+.++|.++|-+|.+-|..++ -+|.+.|-+.|..++|+.+-+.+.++.--+. ....-.+..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3556677777777766544433 3566666677777777777666655311111 112334445566667777777
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChH--------HHHHHHHHHHhcCChHHHHHHHHH
Q 038395 128 WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVV--------VWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
.+|..+... + ..-......|+..|-...+|++|.++-+++.+-+.. .|--+...+....+.+.|..++.+
T Consensus 128 ~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777766653 1 122334455666777777777776666655443222 233334444445666677777766
Q ss_pred HHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 038395 200 MCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS 277 (480)
Q Consensus 200 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 277 (480)
..+.. |..+ .-..+.......|+++.|.+.++.+.+. ...--..+...|..+|...|+.++...++.++ ...+.+
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 66542 2222 2223344556667777777777766643 22222455666667777777777777766665 334444
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH---HHcCChhHHHHHHHHHHhCCCccCCc
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY---AAIGNWDGVARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~ 347 (480)
..-..+-..-....-.+.|...+.+-+...|.-. .+.-|+..- +.-|++.+-..+++.|....++..|.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 4444444444455555666666666666666543 333333332 23345666677777776655554443
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.6e-09 Score=107.66 Aligned_cols=260 Identities=16% Similarity=0.049 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 038395 71 DVVCWNVMIDGYAQ-----HGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACG---------QIGALESGRWIHSYIEN 135 (480)
Q Consensus 71 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 135 (480)
+...|...+.+-.. .+..++|+++|++..+. .|+ ...+..+..++. ..+++++|...++...+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 13467899999999875 564 445555544433 22457899999999987
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-IT 211 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 211 (480)
. -+.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..
T Consensus 333 l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 333 L--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred c--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 4 455777888888899999999999999998764 3 56788889999999999999999999998853 442 22
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS-VLWGTLLGACR 288 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~li~a~~ 288 (480)
+..++..+...|++++|...++++.+. ..|+ +..+..+...|...|++++|...+.++ +..|+. ..++.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 333444566689999999999988743 1343 445677888899999999999999988 445553 44555556667
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..| +.+...++.+.+..-..+..+..+...|.-.|+-+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 4777777777663322111222256677778888877776 7777664
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7e-09 Score=96.23 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGY 184 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 184 (480)
.|...+.+-|+-.++.++|..+|+...+. .+....+|+.+..-|....+...|...++...+ +|-..|-.|..+|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 34555555555555555555555555542 233344555555555555555555555555443 3555555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
...+.+.=|+-.|++.... +| |...|.+|..+|.+.++.++|...|.....- | ..+...+..|.++|-+.++.++
T Consensus 409 eim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHH
Confidence 5555555555555555542 22 3455555555555555666665555555531 1 2233455555555555555555
Q ss_pred HHHHHHh
Q 038395 264 AYKLVMD 270 (480)
Q Consensus 264 A~~~~~~ 270 (480)
|...|++
T Consensus 485 Aa~~yek 491 (559)
T KOG1155|consen 485 AAQYYEK 491 (559)
T ss_pred HHHHHHH
Confidence 5555443
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=2e-09 Score=106.96 Aligned_cols=241 Identities=13% Similarity=0.072 Sum_probs=161.2
Q ss_pred eecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHH
Q 038395 3 KFSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQR----SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM 78 (480)
Q Consensus 3 ~~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 78 (480)
..|+.|+..+|.+||.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+. +|...+|+.|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 3689999999999999999999999998 99888754 4467899999998999887765 7888999999
Q ss_pred HHHHHHcCChHHHHHHHHH-HH-------HCCCCCCHHHHHHHHHHH--------------HccCChHHHHHHHHHHHHh
Q 038395 79 IDGYAQHGLANEALVLFRR-ML-------AEKVEPNEVTAVAVLSAC--------------GQIGALESGRWIHSYIENS 136 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~-m~-------~~g~~pd~~t~~~ll~~~--------------~~~~~~~~a~~~~~~~~~~ 136 (480)
..+|.+.|+... ++..++ |. ..|+.-...-+-..+.+| ...|-++.+.++...+-..
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999999765 222222 21 123221122222222221 1222333333333222111
Q ss_pred CCCCCchhHHHHHHHHHHh-CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038395 137 RNIKVNVQVGTALINMYSK-CGSLKDARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIG 214 (480)
Q Consensus 137 ~~~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 214 (480)
....|..+ .++-... ...+++-...-....+ ++..++.+.+..-.-+|+.+.|..++.+|++.|++.+..-|..
T Consensus 169 a~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 169 AWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 00111111 1111111 1123333333333333 7889999999999999999999999999999999999988888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
|+-+ .++...+..++..|.. .|+.|+.+|+...+-.+...|.
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 8855 7888888888888885 5999999999877766666444
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=6e-09 Score=101.61 Aligned_cols=190 Identities=16% Similarity=0.189 Sum_probs=126.8
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-CCH-H
Q 038395 149 LINMYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLK-PSD-I 210 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~ 210 (480)
+...|...+++++|..+|+++.. + -..+++.|...|.+.|++++|...+++..+ .|.. |.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 34445555555555555544431 1 123455555556666666555555554332 2222 222 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcC--CcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCC
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYA--IEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEP 275 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p 275 (480)
-++.+...|...+.+++|..+++...+.+. ..++ ..+++.|...|...|++++|.+++++. +..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 355666778888999999888887665433 1222 357889999999999999999999887 1122
Q ss_pred C-HhHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 276 D-SVLWGTLLGACRLHGNIALGEKIAEYLIS----QNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 276 ~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
. ...++.|..+|.+.++++.|.++|.+... .+|+. ..+|..|+..|...|++++|.++.+...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 45677888999999999999999888765 45543 4578899999999999999999988875
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2.7e-08 Score=100.33 Aligned_cols=314 Identities=12% Similarity=0.058 Sum_probs=162.4
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH---Hh---cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChH
Q 038395 19 LYARGGDVLSAEKLFATMPQRSLVSLTTMLTCY---AK---QGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLAN 89 (480)
Q Consensus 19 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~---~~---~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 89 (480)
.+.++|+.+.|+..|....+-|+..-++++... .. ...+..+..++...-. .|++..+.|.+-|...|++.
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH
Confidence 334566666666666665543333333332221 11 1123334444433321 36677777888888888888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHHhCCCHHHHHHH
Q 038395 90 EALVLFRRMLAEKVE--PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTALINMYSKCGSLKDARLV 165 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~ 165 (480)
.++.+...+...... .-...|-.+.+++-..|++++|..+|.+..+. .++ +..+--|..+|.+.|+++.|...
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHH
Confidence 888887777654211 12345777888888888888888888777753 333 34445677888888888888888
Q ss_pred HHhcCC--C-ChHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh-
Q 038395 166 FDRVND--K-DVVVWNSMIVGYAMHG----FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD- 237 (480)
Q Consensus 166 f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~- 237 (480)
|+.+.. | +..+...|...|+..+ ..++|..++.+..+.- ..|...|..+...+-. ++...++.+|..+..
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDI 442 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHH
Confidence 877654 2 3345555555555553 3445555555544431 2244455444444433 222222443333221
Q ss_pred --hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C-----CCCCH------hHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 238 --EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K-----IEPDS------VLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 238 --~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~~------~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
..+-.+.++..|.+...+...|.+++|...|... + ..+|. .+-..+....-..++.+.|.+.+..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1122344555666666666666666666666554 1 11121 11122233333334455555555555
Q ss_pred HHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 304 ISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
++..|.-...|.-|+-+--..+...+|...++..
T Consensus 523 lkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 523 LKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 5544444444444443333333444444444333
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.9e-08 Score=95.72 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
......-..-+-..+++.+.+++++...+. .++....+..-|.++...|+..+-..+=..+++ ..|..+.+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHH
Confidence 334444555677789999999999998876 355666666667778888887777766666666 46778889999999
Q ss_pred HHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
-|.-.|+..+|++.|.+...- =...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.+..+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999987653 3468999999999999999999998877653 111222233444568889999999
Q ss_pred HHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-CHhHHHHHHHHHHhcCChhHHHH
Q 038395 229 RRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--------KIEP-DSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
.++|.... ++.|+ +...+-+.-.....+.+.+|..+|+.. +..+ -..+++.|..+|++.+.+++|..
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999987 55564 666666666667788999999998876 1111 34568889999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.+++.+.+.|.++.++.++.-.|...|+++.|...|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987643
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=7.6e-09 Score=105.27 Aligned_cols=257 Identities=10% Similarity=-0.015 Sum_probs=181.4
Q ss_pred ChhHHHHHHHHHHh-----cCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHCC
Q 038395 40 SLVSLTTMLTCYAK-----QGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQ---------HGLANEALVLFRRMLAEK 102 (480)
Q Consensus 40 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g 102 (480)
+..+|...+.+-.. .+++++|...|++..+ | +...|..+..+|.. .+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 45556666665322 2347899999999875 4 34567766665542 244789999999998863
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-hHHHHH
Q 038395 103 VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KD-VVVWNS 179 (480)
Q Consensus 103 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~~~~~ 179 (480)
+-+...+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...|++..+ |+ ...+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 336677888888888999999999999999975 355677888899999999999999999999865 33 223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHH
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSR 257 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 257 (480)
++..+...|++++|+..+++..... .|+ ...+..+..++...|+.++|...+..+... .|+ ....+.+...|.+
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhc
Confidence 4555777899999999999987653 343 444666777888999999999999987643 444 3344556666777
Q ss_pred cCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 258 AGQVEEAYKLVMDM----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 258 ~g~~~~A~~~~~~m----~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
.| ++|...++.+ ...|...-+ +-..+.-+|+.+.+... +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777766665 333433333 33445566777766665 77766543
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.1e-09 Score=95.38 Aligned_cols=228 Identities=15% Similarity=0.136 Sum_probs=157.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-++|.+..+.+.|+.++.+-.. .++.|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 56777888888888888888877765 56667777788888888888888888887775 355555555556666666
Q ss_pred CCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.++.++|.++++...+ .++.+..++..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6666666666666544 24444444555555666666666666666666654 4445555555555555555555555
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.... -.+|+ ..+|..|.......||+..|.+.|+..+..++++
T Consensus 382 ~RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 444321 11222 4567777777777889999999999999989988
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 311 SGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..+++.|.-.-.+.|++++|..++...+...
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8899999888899999999999988877654
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.11 E-value=2e-07 Score=93.46 Aligned_cols=333 Identities=12% Similarity=0.076 Sum_probs=243.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATM---PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~ 80 (480)
+.+...|-.|...|-..|+.+++...+-.. ...|..-|..+.....+.|.++.|.-.|.+..+. +....--=+.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 446678999999999999999998876543 2357788999999999999999999999998763 3333334456
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEV----TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
.|-+.|+...|++.|.++.....+.|.. +.-.++..+...++-+.|.+.+.......+-..+...++.+..+|.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 7889999999999999999874322322 233345556667777888888887776434455667788999999999
Q ss_pred CCHHHHHHHHHhcCC----C----------------------ChHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 157 GSLKDARLVFDRVND----K----------------------DVVVWNS----MIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 157 g~~~~A~~~f~~m~~----~----------------------~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
..++.|......+.. + +..+|+. +.-++......+....+.....+..+.
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 999998877665543 1 1111211 222334444444444455555555533
Q ss_pred C--CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHH
Q 038395 207 P--SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGT 282 (480)
Q Consensus 207 p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 282 (480)
| +...|.-+..++.+.|.+.+|..+|..+... ...-+...|--+..+|...|..++|.+.|+.. ...|+ ...--+
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 3 4567888999999999999999999999854 22334678999999999999999999999988 55564 455566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC---------CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLA---------NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...+.+.|+.++|.+.+..+..-++. +..........|...|+.++-..+-.+|...
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 778889999999999999987743322 2234456778889999999877777777554
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.5e-07 Score=84.91 Aligned_cols=300 Identities=12% Similarity=0.054 Sum_probs=202.1
Q ss_pred CCCChhHHHHHHHHHHhc--CChHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH---HH
Q 038395 6 LDKDLYVSTSLVDLYARG--GDVLSAEKLFATMP-----QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVV---CW 75 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~ 75 (480)
++|+......-+.+|+.+ ++-..|...+-... .-|+.....+...+...|+.++|+..|++...-|.. +.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 344444444445555443 44444444433222 236777888888888999999999999886543322 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
..-.-.+.+.|++++...+...+.... +-....|..-+......++++.|+.+-+..++. -+.+...+..-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHh
Confidence 222334567788888777777766531 223333444444445567778888877777653 33445555555667788
Q ss_pred CCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHH-HccCCHHHHHH
Q 038395 156 CGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL-SAC-AHAGLVNEGRR 230 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~-~~~g~~~~a~~ 230 (480)
.|+.+.|.-.|+.... -+..+|.-|+..|...|++.+|.-+-+...+. +..+..+.+.+. ..| -....-++|.+
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 8999999888887653 37789999999999999999988877765543 233444544441 222 23334578888
Q ss_pred HHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
+++.-. .+.|+ ....+.+...+...|..+++..++++. ...||...-+.|...++..+.+.+|...|..+++++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 888766 44676 445567778888899999999999887 6678999999999999999999999999999999999
Q ss_pred CCch
Q 038395 309 ANSG 312 (480)
Q Consensus 309 ~~~~ 312 (480)
.+..
T Consensus 503 ~~~~ 506 (564)
T KOG1174|consen 503 KSKR 506 (564)
T ss_pred cchH
Confidence 8743
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=9.8e-09 Score=91.16 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=163.2
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFI-GLL 216 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll 216 (480)
-.|..=-+.+...|.+.|.+.+|.+.|+...+ +-+.+|-.|-.+|.+..++..|+.+|.+-.+. .|-.+||. ...
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 33444447788999999999999999987654 67789999999999999999999999998774 56666664 566
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~ 293 (480)
..+...++.++|.++++...+.. ..+++...++...|.-.++.+-|+.+++++ |+ -++..|+.+.-+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 77888899999999999998642 446788888999999999999999999887 64 4788999999999999999
Q ss_pred hHHHHHHHHHHHcC--CC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 294 ALGEKIAEYLISQN--LA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 294 ~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+.++.-|++++..- |. -...|..|.......|++.-|.+-|+.....+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999998843 32 34578888888888999999998888765443
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=5.6e-08 Score=90.70 Aligned_cols=217 Identities=11% Similarity=-0.003 Sum_probs=113.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH
Q 038395 85 HGLANEALVLFRRMLAEK-VEPN--EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 161 (480)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+....+. .+.+...|+.+...|...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 345566666666666431 1222 234555555666677777777777666653 34456666667777777777777
Q ss_pred HHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 162 ARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 162 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
|...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 7777766643 2 3456666666666667777777777666653 33322111111223345566666666655432
Q ss_pred cCCcCCccHHHHHHHHHHHcCCHHHH--HHHHHhC-CC----CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 239 YAIEPKVEHYGCMVNLLSRAGQVEEA--YKLVMDM-KI----EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 239 ~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
...|+...+ .++.. ..|++.++ .+.+.+- .. .| ....|..+...+...|++++|...|+++++.+|++
T Consensus 194 -~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 122322221 22222 23333222 2222111 11 11 12355666666666666666666666666666543
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.7e-07 Score=86.18 Aligned_cols=94 Identities=12% Similarity=-0.172 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
.|..+...|.+.|+.++|...|++..+.. +.+...|..+...+...|+++.|...++...+. .+.+..++..+...|
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 35555555555555555555555555532 223445555555555555555555555555542 222344445555555
Q ss_pred HhCCCHHHHHHHHHhcC
Q 038395 154 SKCGSLKDARLVFDRVN 170 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~ 170 (480)
...|++++|.+.|+...
T Consensus 143 ~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 143 YYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555555543
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=3.1e-06 Score=79.29 Aligned_cols=318 Identities=13% Similarity=0.148 Sum_probs=213.7
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 038395 18 DLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYAQHGLANEALV 93 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 93 (480)
-+=-..|++..|+++|+.-. +|+...|++.|..=.+-..++.|..++++.. .|++.+|--...-=-++|+...|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 33344566677777776543 4666777777776666666777777766643 4666666666666666666666666
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHh---------------------------------
Q 038395 94 LFRRMLAEKVEPNEV----TAVAVLSACGQIGALESGRWIHSYIENS--------------------------------- 136 (480)
Q Consensus 94 ~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------------------- 136 (480)
+|....+. -.|.. .|++...-=.+...++.|..++...+..
T Consensus 229 VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 229 VYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 66655442 11111 1222222112233334444444333321
Q ss_pred ---------CCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC---hHHHHHHHHH--------HHhcCChHHHH
Q 038395 137 ---------RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KD---VVVWNSMIVG--------YAMHGFGKDAL 194 (480)
Q Consensus 137 ---------~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~---~~~~~~li~~--------~~~~g~~~~A~ 194 (480)
...+.|-.+|--.++.-...|+.+...++|++... |. -..|.-.|-. -....+.+.+.
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 02334455566667777778999999999998764 21 1233332221 12467889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH----HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSAC----AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++|+...+. ++-...||..+=-.| .+..++..|.+++.... |.-|...++-..|+.=.+.+.+|.+..++++
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999998873 444567776554333 46688999999999987 8899999999999999999999999999998
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 271 M-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 271 m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
. ...| |..+|......-...|+.+.|..+|..++..... +...+-+-|..-...|.++.|..+++++.++.
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 7 5556 5789998888888999999999999999875432 22355666777788999999999999998764
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.02 E-value=3.5e-08 Score=96.31 Aligned_cols=225 Identities=17% Similarity=0.163 Sum_probs=117.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC----------CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CC-CHH
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEE----------KDVV-CWNVMIDGYAQHGLANEALVLFRRMLAE-----KV-EP-NEV 108 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p-d~~ 108 (480)
+...|...|+++.|+.+|+...+ |.+. .-+.+...|...+++++|..+|+++..- |- .| -..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 55555555555555555554332 2222 1233445555666666666666655431 11 11 122
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC----C-CCCch-hHHHHHHHHHHhCCCHHHHHHHHHhcCC-------C-C-
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSR----N-IKVNV-QVGTALINMYSKCGSLKDARLVFDRVND-------K-D- 173 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~-~- 173 (480)
+++.|..+|.+.|++++|...++...+.. + ..|.+ ...+.+...+...++++.|..+++...+ + +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 45555555666666665555554443310 1 11111 1233444555556666666655554321 1 2
Q ss_pred --hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHhh---hhcCC
Q 038395 174 --VVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RL--KP-SDITFIGLLSACAHAGLVNEGRRFFNTMK---DEYAI 241 (480)
Q Consensus 174 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~ 241 (480)
.-+++.|...|...|++++|.++|++.... +- .+ ....++.+..+|.+.+..++|.++|.+.. +..|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 135666777777777777777777665432 11 11 13455666667777777776666665532 12222
Q ss_pred -cCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 242 -EPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 242 -~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.|+ ..+|..|...|.+.|++++|.++.+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 233 456777777777777777777776554
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.97 E-value=3.2e-06 Score=82.03 Aligned_cols=323 Identities=15% Similarity=0.213 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhHHHHHHHHHHh----------------cC------CHHHHHHHHh
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQR--SLVSLTTMLTCYAK----------------QG------EVAAARVLFD 65 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~----------------~g------~~~~A~~~f~ 65 (480)
.+.|++|.+-|.+.|.++.|+.+|++..+. .+.-++.+-.+|++ .| +++-...-|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 358999999999999999999999986542 22233444444411 11 1233334444
Q ss_pred hcCC---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChH
Q 038395 66 DMEE---------------KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN------EVTAVAVLSACGQIGALE 124 (480)
Q Consensus 66 ~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd------~~t~~~ll~~~~~~~~~~ 124 (480)
.+.. .++..|..-+.. ..|++.+-...|.+..+. +.|. ...|..+.+.|-+.|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4332 134445444432 356677777777777664 3332 235667777777888888
Q ss_pred HHHHHHHHHHHhCCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---------------------CChHHHHHH
Q 038395 125 SGRWIHSYIENSRNIKVN---VQVGTALINMYSKCGSLKDARLVFDRVND---------------------KDVVVWNSM 180 (480)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------------~~~~~~~~l 180 (480)
.|+.+|+...+. .++.- ..+|....++=.+..+++.|+++.+.... ++...|...
T Consensus 405 ~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 405 DARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888887765 43332 45677777777777778888777765431 123345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC----------------------------------CCCHH-HHHHHHHHH---Hcc
Q 038395 181 IVGYAMHGFGKDALQLFNEMCRIRL----------------------------------KPSDI-TFIGLLSAC---AHA 222 (480)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~g~----------------------------------~p~~~-t~~~ll~a~---~~~ 222 (480)
+..--..|-++....+|+++.+..+ -|+.. .|+..|.-+ ...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 5554555555555555555544322 23321 222222211 123
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCC--HhHHHHHHHHHHhcCChh
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDM--KIEPD--SVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~--~~~~~~li~a~~~~~~~~ 294 (480)
..++.|+.+|++..+ +.+|.-. -.+--.|+ +.|....|..++++. ++++. ...|+..|.--...=.+.
T Consensus 564 ~klEraRdLFEqaL~--~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 564 TKLERARDLFEQALD--GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred CCHHHHHHHHHHHHh--cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 468899999999985 6665422 22222333 468888899999988 44443 467888887666555567
Q ss_pred HHHHHHHHHHHcCCCCch--hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 295 LGEKIAEYLISQNLANSG--TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
....+++++++.-|+... .-.-.+.+-.+.|..+.|..++..-.+-
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 778899999998665422 2234566778899999999999776554
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.3e-07 Score=85.17 Aligned_cols=271 Identities=13% Similarity=0.037 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 42 VSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 42 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
.....-..-+..++++.+..++++...+. ....+..-|.++...|+..+-..+=.+|.+. .+-.+.+|-++.--|.
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 33444455567889999999999988763 4556777788999999999988888888876 4556789999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (480)
..|...+|++.+...... -+.-...|......|+-.|.-|.|...+....+ .....+--+.--|.+.+....|.+
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999988743 122356788899999999999999888866543 111122223445778899999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCcC----CccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 196 LFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEP----KVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 196 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
.|.+... +.| |....+-+.-..-+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+.+++|+..++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9998776 444 55566666655667889999999998876211 1111 23457889999999999999999999
Q ss_pred hC-C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHH
Q 038395 270 DM-K-IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 270 ~m-~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
+. . .+.+..++.++.-.+...|+++.|...|.+.+-+.|++..+-..|
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 87 3 334788999999999999999999999999999999986443333
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=7.3e-07 Score=88.24 Aligned_cols=148 Identities=11% Similarity=0.081 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc----C---------CcCCc--cHHHHHHHHHH
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY----A---------IEPKV--EHYGCMVNLLS 256 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~---------~~p~~--~~~~~li~~~~ 256 (480)
.+...+..+...|+++ +|+.|-..|......+-..+++....... . -.|+. .++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3445556666677653 45555555555444444444444443211 0 12333 24455677788
Q ss_pred HcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 257 RAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 257 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..|++++|++++++. ...|+ +..|..-...+...|++++|...++.+.++++.|-..-.-.+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 899999999999876 55666 6677778888889999999999999999998887666666777788899999999998
Q ss_pred HHHHhCCC
Q 038395 335 TLMKEKGV 342 (480)
Q Consensus 335 ~~m~~~~~ 342 (480)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877665
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.7e-05 Score=73.25 Aligned_cols=246 Identities=13% Similarity=-0.011 Sum_probs=107.8
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH-HHHHHHHHhCCCHHHH
Q 038395 85 HGLANEALVLFRRMLAEK-VEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG-TALINMYSKCGSLKDA 162 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A 162 (480)
.++...|...+-.+.... ++-|......+...+...|+.+++...|+.... +.|+.... ....-.+.+.|+++.-
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444444433332222 344555666677777777777777777776653 33332211 1111223344555444
Q ss_pred HHHHHhcCC---CChHHHHHHH----------------------------------HHHHhcCChHHHHHHHHHHHHcCC
Q 038395 163 RLVFDRVND---KDVVVWNSMI----------------------------------VGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 163 ~~~f~~m~~---~~~~~~~~li----------------------------------~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
.++...+.. .....|-.-. ..+.+.|++++|.-.|+..+...
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 444333322 1122232222 33444455555555555444321
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH-HHHH-HcCCHHHHHHHHHhC-CCCCC-HhHHH
Q 038395 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV-NLLS-RAGQVEEAYKLVMDM-KIEPD-SVLWG 281 (480)
Q Consensus 206 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~-~~~~~ 281 (480)
+-+...|..|+.+|...|.+.+|.-.-+...+. +..+..+.+.+. ..+. ...--++|.+++++- .++|+ ....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 123344555555555555555544444333321 112222222221 1111 111123444444443 44444 23334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.+...|..-|..+.+..++++.+...|+. ...+.|...+...+.+.+|...|...
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44445555555555555555555544443 34555555555555555555555443
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=2.3e-06 Score=84.72 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=66.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRL 289 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~ 289 (480)
.-+...|...|+.++|.++.+..... .|+ +..|..-...|-+.|++++|.+.++.. .+.+ |-.+-+-....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34445555666666666666655532 344 455555556666666666666666555 2222 33344444455556
Q ss_pred cCChhHHHHHHHHHHHcCCCCch-------hH--HHHHHHHHHcCChhHHHHHHHHHH
Q 038395 290 HGNIALGEKIAEYLISQNLANSG-------TY--VLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~-------~~--~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.|++++|.+.+....+.+.+... .| .-.+.+|.+.|++..|++-|..+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666655543311000 11 345666777777777766555543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=6.5e-06 Score=79.40 Aligned_cols=195 Identities=13% Similarity=-0.004 Sum_probs=99.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHH
Q 038395 147 TALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSD--ITFIGLLSACA 220 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~ 220 (480)
..+...+...|++++|.+.+++..+ .+...+..+...|...|++++|..++++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555666666666666665543 2344555566666666666666666666554321 1221 22334555566
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHH-H--HHHHHHHHcCCHHHHHHH---HHhC-CCCC---CHhHHHHHHHHHHhc
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHY-G--CMVNLLSRAGQVEEAYKL---VMDM-KIEP---DSVLWGTLLGACRLH 290 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~li~a~~~~ 290 (480)
..|+.++|..+++.........+..... + .++..+...|..+.+.++ .... +..| ..........++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6666666666666654211101111110 1 122222233322222222 1111 1001 112222455666777
Q ss_pred CChhHHHHHHHHHHHcCCC---------CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 291 GNIALGEKIAEYLISQNLA---------NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|+.+.|..+++.+....-. .........-++...|++++|.+.+.......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888777662211 22344556667789999999999988876654
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=8.6e-08 Score=88.31 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=71.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH----HHcCCH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL----SRAGQV 261 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~ 261 (480)
..|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..| .+...+..++ .-.+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhH
Confidence 345555555444321 2233334444555555555555555555542 1222 2222222222 122346
Q ss_pred HHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh-hHHHHHHHHHH
Q 038395 262 EEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW-DGVARVRTLMK 338 (480)
Q Consensus 262 ~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 338 (480)
.+|..+|+++ ...+++.+.+.+..++...|++++|+.++.++.+.+|.++.+...++-+....|+. +.+.+.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6666666666 23345566666666666666666666666666666666666666666666666666 44555665555
Q ss_pred h
Q 038395 339 E 339 (480)
Q Consensus 339 ~ 339 (480)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.2e-06 Score=80.57 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=201.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHc
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSACGQ 119 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~ 119 (480)
+-...+-|.+.|++++|++.+.+..+ || .+.|.....+|...|+++++.+--.+.++ +.|+-+ .+..-.++.-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 34445556888999999999998875 67 78899999999999999999988877776 567644 66667778888
Q ss_pred cCChHHHHHHHHHHH------------------H----------hC----CCCCchhHHHHHHHHHH---------hCC-
Q 038395 120 IGALESGRWIHSYIE------------------N----------SR----NIKVNVQVGTALINMYS---------KCG- 157 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~------------------~----------~~----~~~~~~~~~~~li~~y~---------~~g- 157 (480)
+|++++++.=..-.. + .. ..-|+.....+....+. +..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 898887543211110 0 00 11122211111111111 000
Q ss_pred ---CHHHHHHHHHhcC------------C----------C---Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 158 ---SLKDARLVFDRVN------------D----------K---DV------VVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 158 ---~~~~A~~~f~~m~------------~----------~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+.++.+.+..-. + . |. .+.+.-..-+.-.|+.-.|.+-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 1122222221111 0 0 11 11111112233467888899999998876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHH
Q 038395 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLW 280 (480)
Q Consensus 204 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 280 (480)
...++. .|.-+..+|....+.++.+..|+...+ +.| ++.+|-.-.+++.-.+++++|..=|++. .+.|+ +..|
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 444333 266777789999999999999999883 344 4777888888888889999999999988 66664 6667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
--+.-+.-+.+.+++++..|++.++.-|..+..|+....++..+++++.|.+.|+...+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 777777778889999999999999999999999999999999999999999999988764
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=4.1e-07 Score=77.44 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHH
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNL 254 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 254 (480)
...|.-+|.+.|+...|..-+++..+. .| +..++..+...|.+.|..+.|.+-|+...+ +.|+ -.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 444566777777777777777777764 33 345666777777777777777777777763 3444 5566667777
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH
Q 038395 255 LSRAGQVEEAYKLVMDMKIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 330 (480)
+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7777888888888877622222 457777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 038395 331 ARVRTLMKEKGV 342 (480)
Q Consensus 331 ~~~~~~m~~~~~ 342 (480)
...++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888877766654
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=1.1e-05 Score=80.03 Aligned_cols=332 Identities=14% Similarity=0.068 Sum_probs=197.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC-HHHHHH
Q 038395 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE----KD-VVCWNV 77 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~-~~~~~~ 77 (480)
+.-|+.+|..|.-+...+|+++.+-+.|++... .....|+.+...|+.+|.-..|..+++.-.. |+ ...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345888999999999999999999999998653 3446799999999999999999999887543 32 222222
Q ss_pred HHHHHHH-cCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHhCCCCC
Q 038395 78 MIDGYAQ-HGLANEALVLFRRMLAE--KV--EPNEVTAVAVLSACGQI-----------GALESGRWIHSYIENSRNIKV 141 (480)
Q Consensus 78 li~~~~~-~g~~~~A~~~~~~m~~~--g~--~pd~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 141 (480)
.-..|.+ -+..+++++.-.+.... +. ......|..+.-+|... ....++.+.++...+..+..|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2223332 35555555554444431 10 01112222222222211 012234444555444323333
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-----------
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVN----DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RL----------- 205 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~----------- 205 (480)
++..|-++ -|+..++++.|.+...+.. ..+...|..+.-.+.-.+++.+|+.+.+...+. |.
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333222 2444455555555444332 234455555555555555555555544433221 00
Q ss_pred --------------------------------------------------------------------------------
Q 038395 206 -------------------------------------------------------------------------------- 205 (480)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (480)
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence
Q ss_pred ----CCCH------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038395 206 ----KPSD------ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE 274 (480)
Q Consensus 206 ----~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 274 (480)
.|+. ..|......+...+..++|...+.+..+- .......|......+...|.+++|.+.|... -+.
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0000 01112223334444455555444444321 1222344555555666778888888888776 667
Q ss_pred CC-HhHHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 275 PD-SVLWGTLLGACRLHGNIALGEK--IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 275 p~-~~~~~~li~a~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|+ +.+..++...+...|+...|.. ++..+.+.+|.++..|..|..++-+.|+.+.|.+-|+...+..
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 75 7788899999999999988888 9999999999999999999999999999999999999887654
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=4.4e-07 Score=94.75 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=174.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 209 (480)
+-|.+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .-..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~ 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAY 1530 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchH
Confidence 45667788899999999999999999999987642 3468999998888889888999999999874 2234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWGTLLG 285 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~ 285 (480)
..|..|...|.+.+..++|.++++.|.+.++ -....|...++.+.+..+-+.|..++.+. |-+.......-.+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 5688899999999999999999999998776 66788999999999999999999999887 33335666777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 344 (480)
.-.++|+.+.+..+|+..+...|.....|...+++-.+.|+.+.++.+|++....++.+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 78899999999999999999999988999999999999999999999999999988753
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=5.7e-09 Score=61.78 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=29.2
Q ss_pred ecCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 038395 4 FSLDKDLYVSTSLVDLYARGGDVLSAEKLFATMP 37 (480)
Q Consensus 4 ~g~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 37 (480)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888888888888888888888888888884
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=3.5e-06 Score=71.87 Aligned_cols=195 Identities=12% Similarity=0.021 Sum_probs=116.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC
Q 038395 112 AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHG 188 (480)
Q Consensus 112 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 188 (480)
.+.-.|.+.|+...|+.-++..++. -+.+..++..+...|.+.|+.+.|.+-|++..+ .+..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 3444455555555555555555542 233344455555556666666666666655432 24455556666666666
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 266 (480)
++++|...|++......-| -..||..+.-+..+.|+.+.|...|.+..+. .|+ ......+.....+.|++..|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777776666542211 1345666665666777777777777776632 333 4555666677777777777777
Q ss_pred HHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 267 LVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 267 ~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
+++.. ...++..+.-..|..-...||.+.+.+.-..+.+.-|...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 77766 3346666666666777777777777777777666666543
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.8e-05 Score=76.35 Aligned_cols=291 Identities=14% Similarity=0.087 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChh---HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLV---SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMID 80 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 80 (480)
...|..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+ | |...++. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 45566677777778888887666665432 2222 122234456788999999999988664 3 4445553 22
Q ss_pred HHHH----cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 81 GYAQ----HGLANEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 81 ~~~~----~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
.+.. .+....+.+.+.. .....|+. .....+...+...|++++|...++...+. .+.+...+..+...|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 3333 3455555555544 22233443 34445666788999999999999999974 45567788889999999
Q ss_pred CCCHHHHHHHHHhcCCC-----Ch--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHccCC
Q 038395 156 CGSLKDARLVFDRVNDK-----DV--VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITF-I--GLLSACAHAGL 224 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~~-----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~ 224 (480)
.|++++|...+++.... +. ..|..+...+...|++++|+.+|++...... .+..... . .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999987642 22 3466788889999999999999999864322 1222211 1 23333344444
Q ss_pred HHHHHHH--HHHhhhhcCCcCCccHH--HHHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----hHHHHHH--HHHHh
Q 038395 225 VNEGRRF--FNTMKDEYAIEPKVEHY--GCMVNLLSRAGQVEEAYKLVMDMK--IEP---DS----VLWGTLL--GACRL 289 (480)
Q Consensus 225 ~~~a~~~--~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~--~~p---~~----~~~~~li--~a~~~ 289 (480)
.+.+.+. +...... ........+ .....++...|+.++|..+++.+. ... .. .+-..++ -++..
T Consensus 241 ~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 4433333 2111111 111111222 245566778899999999998871 111 11 1122233 34567
Q ss_pred cCChhHHHHHHHHHHHc
Q 038395 290 HGNIALGEKIAEYLISQ 306 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~ 306 (480)
.|+.+.|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999999888763
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=4.9e-07 Score=83.32 Aligned_cols=247 Identities=12% Similarity=0.037 Sum_probs=153.4
Q ss_pred hcCCHHHHHHHHhhcC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 038395 53 KQGEVAAARVLFDDME-EK--DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWI 129 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~ 129 (480)
-.|.+..++.-.+.-. .+ +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3566666665444111 11 23345556677777887765543 333332 56655555555444443444444443
Q ss_pred HHHHHHhCCCC-CchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 130 HSYIENSRNIK-VNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 130 ~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
+...... ... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 89 l~~~~~~-~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 89 LKELLAD-QAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHCCCT-S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHh-ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 3333322 222 23334444445677788999888888765 45666667788888999999999999998764 333
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH
Q 038395 209 DITFIGLLSACAH----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGT 282 (480)
Q Consensus 209 ~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 282 (480)
.+...+..++.. .+.+.+|..+|+++... ..+++.+.+.+.-+....|++++|.+++.+. ...| ++.+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 444445554432 34688999999998753 4567788888888889999999999988886 3344 4667777
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCc
Q 038395 283 LLGACRLHGNI-ALGEKIAEYLISQNLANS 311 (480)
Q Consensus 283 li~a~~~~~~~-~~a~~~~~~~~~~~~~~~ 311 (480)
++......|+. +.+.+.+.++....|..+
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 88877787877 678888888888888764
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=3.7e-06 Score=82.66 Aligned_cols=284 Identities=17% Similarity=0.195 Sum_probs=185.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHH--------HH--------
Q 038395 15 SLVDLYARGGDVLSAEKLFATM--PQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVC--------WN-------- 76 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--------~~-------- 76 (480)
+.|+.|.+.|.+..|.+.-..= ...|......+..++.+..-+++|-.+|+++..+|... |.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 4578888888888776654321 12455555555666666666666666666666543210 11
Q ss_pred -----------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 77 -----------VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 77 -----------~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
.....+.+.|+++.|+..|-+.. ...-.+.+......+.+|..+++.+... ....-.
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq---k~~s~y 767 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTASGY 767 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh---cccccc
Confidence 01111223334444443332221 1223344555667888888888877654 333445
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
|..+.+.|+..|+++.|.++|-+.. .++--|..|.+.|+++.|.++-.+.. |.......|..-..-.-..|.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 6778889999999999999998753 45667888999999999998876653 3344455666666667788888
Q ss_pred HHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.+|.+++-.+. .|+ ..|.+|-+.|..++.+++.++-.-.--..|-..+..-+-..|++..|+.-|-++
T Consensus 841 ~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-- 908 (1636)
T KOG3616|consen 841 AEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-- 908 (1636)
T ss_pred hhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--
Confidence 88888776554 354 357889999999999999887731222445666777788888888888776554
Q ss_pred cCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 306 QNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.-|.+-.++|-..+.|++|.++-+
T Consensus 909 ------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 909 ------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 345666778888888888877654
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=4.2e-07 Score=87.11 Aligned_cols=219 Identities=11% Similarity=0.072 Sum_probs=173.2
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
+.+.|++.+|.-.|+..++ .-|.+...|--|.......++-..|+..+++..+ .|....-+|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4567888888888888887 3566788888888888888888888888888765 3667777888888999999999
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 194 LQLFNEMCRIRLK--------PSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 194 ~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
++.++.-.....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999887653211 00000000 1222333455666777777666676688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 266 KLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 266 ~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+.|+.. .++| |..+||-|...++...+.++|...|.+++++.|.-..+...|...|...|.+++|.+.|=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999988 7777 4789999999999999999999999999999999888999999999999999999998866543
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=2.3e-05 Score=70.73 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=30.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+-.++...+++.+|++...++++.+|++..++---..+|.-..++++|..-|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555555555555555555555555555443
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=7.7e-06 Score=72.25 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND-KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-RLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
.+++..++.+.++.+. .+..+.+.......+.|++++|++-|+...+- |.. ....|+..+. ..+.++.+.|+++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 4555555555555553 34444444444444556666666666655542 333 2344544442 333455566665555
Q ss_pred HhhhhcCCc-------------CC--------ccHHHHHHHH-------HHHcCCHHHHHHHHHhCC----CCCCHhHHH
Q 038395 234 TMKDEYAIE-------------PK--------VEHYGCMVNL-------LSRAGQVEEAYKLVMDMK----IEPDSVLWG 281 (480)
Q Consensus 234 ~m~~~~~~~-------------p~--------~~~~~~li~~-------~~~~g~~~~A~~~~~~m~----~~p~~~~~~ 281 (480)
++.++ |++ || ..+-+.++.+ +.+.|+++.|.+-+.+|| -..|++|..
T Consensus 203 EIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 203 EIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 55432 322 11 1223444443 457899999999999994 234677776
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
.+.-. -..+++..+.+-+.-+++.+|-++.+|..++-.|++..-++-|..++.+
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55322 2345677778888888889998888999999999999999999888754
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.74 E-value=5.8e-05 Score=73.58 Aligned_cols=145 Identities=11% Similarity=0.208 Sum_probs=84.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRLKPS------DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLS 256 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~ 256 (480)
.|+..+-...|.+..+. +.|- ...|..+...|-+.|+++.|+.+|++..+. .. +. ..+|..-.++=.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y-~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PY-KTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-Cc-cchHHHHHHHHHHHHHHH
Confidence 35555666666666543 3332 234666777777888888888888877642 11 11 234444455555
Q ss_pred HcCCHHHHHHHHHhC---CCC-----------------CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 257 RAGQVEEAYKLVMDM---KIE-----------------PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 257 ~~g~~~~A~~~~~~m---~~~-----------------p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
+..+++.|++++++. |.. ....+|..++..--..|-++....++++++++..-.|..-..
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 677777888877766 211 123456666666666677777777777777766554443333
Q ss_pred HHHHHHHcCChhHHHHHH
Q 038395 317 LSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~ 334 (480)
.+..+-...-++++.+++
T Consensus 517 yAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333344444555565555
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.9e-08 Score=58.18 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.3
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788888888888888888888888888888874
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=0.00013 Score=79.77 Aligned_cols=322 Identities=15% Similarity=0.070 Sum_probs=201.0
Q ss_pred HHhcCChHHHHHHHhhCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C------CH--HHHHHHHHHHH
Q 038395 20 YARGGDVLSAEKLFATMPQ----RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE----K------DV--VCWNVMIDGYA 83 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~------~~--~~~~~li~~~~ 83 (480)
....|+++.+...++.++. .+..........+...|++++|...++...+ . .. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666666666666642 1222223344445677888888887765431 1 11 11222334556
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhC---CC-CCchhHHHHHHHHHHh
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNE----VTAVAVLSACGQIGALESGRWIHSYIENSR---NI-KVNVQVGTALINMYSK 155 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~li~~y~~ 155 (480)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+....... |. .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887763111122 234445555677899999988888776431 11 1112344566677888
Q ss_pred CCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPS--DITFIGLLSACA 220 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~ 220 (480)
.|+++.|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999888776532 1 1223445556677789999999998887542 11122 233444556677
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----hHHHHHHHHHHh
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHY-----GCMVNLLSRAGQVEEAYKLVMDMKI-E-PDS----VLWGTLLGACRL 289 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~li~a~~~ 289 (480)
..|+.++|...+.....-..-......+ ...+..+...|+.+.|.+++..... . ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875321111111111 1122445568999999999877621 1 111 123456677888
Q ss_pred cCChhHHHHHHHHHHHcC----C--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQN----L--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|+.++|...++++.... . ....+...+..+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999988742 1 123466788889999999999999999887654
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00031 Score=68.08 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------HhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN--------TMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
.+.+|.+++...-+....-........+......|+++.|.+++. .+.+ +.-.+.+-.+++..|.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccC
Confidence 355666666655443212123444555666778899999999998 4442 23345566778888988888
Q ss_pred HHHHHHHHHhC--------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 261 VEEAYKLVMDM--------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 261 ~~~A~~~~~~m--------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
-+.|..++.+. ...+. ..+|.-+..--.++|+.++|..+++++.+..|++..+...++.+|++. +.+.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 77777776655 11222 234444445556789999999999999999999999999999999887 567776
Q ss_pred HHHH
Q 038395 332 RVRT 335 (480)
Q Consensus 332 ~~~~ 335 (480)
.+-+
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 6543
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=8.3e-06 Score=73.63 Aligned_cols=181 Identities=10% Similarity=0.014 Sum_probs=115.5
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVND--KD-V---VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFI 213 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 213 (480)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455566677777778888888888776653 21 1 35666777777788888888888887764322111 1333
Q ss_pred HHHHHHHcc--------CCHHHHHHHHHHhhhhcCCcCCcc-HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 038395 214 GLLSACAHA--------GLVNEGRRFFNTMKDEYAIEPKVE-HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284 (480)
Q Consensus 214 ~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 284 (480)
.+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHHH
Confidence 344444433 5677777777777643 34422 22111111 0000000 00112455
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+...|+++.|...++.+++..|++ +..+..+..+|.+.|++++|...++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67888999999999999999987654 468889999999999999999999888754
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.59 E-value=0.00032 Score=68.69 Aligned_cols=314 Identities=13% Similarity=0.098 Sum_probs=174.7
Q ss_pred hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHH
Q 038395 22 RGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~ 95 (480)
..|+.++|......... ++.+.|..+.-.+-...++++|++.|..... | |...|.-|.-.-++.|+++.....-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555555555554433 2345566666666666667777776665442 2 4455555555555666666665555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH------HHHHhCCCHHHHHHHHHh
Q 038395 96 RRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI------NMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 96 ~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li------~~y~~~g~~~~A~~~f~~ 168 (480)
.++.+. .| ....|.....+.--.|+...|..+.+...+...-.|+...+.-.. ....+.|.+++|.+.+..
T Consensus 133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 133 NQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 555543 33 334566666666667777888888877777522245554443322 234456777777777666
Q ss_pred cCCC--ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHH-HHHHHhhhhc----
Q 038395 169 VNDK--DVV-VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA-HAGLVNEGR-RFFNTMKDEY---- 239 (480)
Q Consensus 169 m~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~-~~~~~m~~~~---- 239 (480)
-... |-. .-.+....+.+.++.++|..++..+... .||..-|...+..+. ...+.-++. .+|....+.+
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 5432 222 2233455667778888888888888774 566666655444333 222222222 3333332211
Q ss_pred -----------------------------CCcCCccHHHHHHHHHHHcCCHHH----HHHHHHhC-C------------C
Q 038395 240 -----------------------------AIEPKVEHYGCMVNLLSRAGQVEE----AYKLVMDM-K------------I 273 (480)
Q Consensus 240 -----------------------------~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~ 273 (480)
|++ .++..+...|-.-...+= +..+...+ + .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 111 122222222221111110 11112222 1 1
Q ss_pred CCCHhHHHH--HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 274 EPDSVLWGT--LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 274 ~p~~~~~~~--li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.|....|.. ++..+-..|+++.|+...+.++..-|.-+..|..-++++...|+.++|...+++..+...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 455555543 455666778888888888888877777667777777888888888888888887766543
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=3.8e-05 Score=80.96 Aligned_cols=226 Identities=16% Similarity=0.192 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-----chhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-----NVQVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWN 178 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~ 178 (480)
....|...+....+.++.+.|+++.+++.+. +.+ -..+|.+++++-..-|.-+...++|+++.+- ....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 4557878888888999999999999998874 322 2457888888888888888899999998763 346788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHH
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLL 255 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~ 255 (480)
.|...|.+.++.++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+. -|. .....-.+++-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHH
Confidence 9999999999999999999999875 3356678888999999999999999999988853 344 33445556677
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--Cch-hHHHHHHHHHHcCChhHH
Q 038395 256 SRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSG-TYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a 330 (480)
.+.|+.+.+..+|+.. ..+.....|+.++..-.++|+.+.++.+|++++.+... ... .|.-.+..--..|+-+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 7899999999999887 22235678999999999999999999999999997643 333 344444444455665555
Q ss_pred HHHHHHH
Q 038395 331 ARVRTLM 337 (480)
Q Consensus 331 ~~~~~~m 337 (480)
..+-.+.
T Consensus 1691 E~VKarA 1697 (1710)
T KOG1070|consen 1691 EYVKARA 1697 (1710)
T ss_pred HHHHHHH
Confidence 5544433
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.00028 Score=69.08 Aligned_cols=326 Identities=12% Similarity=0.051 Sum_probs=211.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--C-CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q 038395 11 YVSTSLVDLYARGGDVLSAEKLFATMP--Q-RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQ 84 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 84 (480)
+-|..+.-.+-...++++|.+.|.... + .|...|.-+.-.-++.|+++.....-.+..+ .....|..+..++.-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 345555555555678999999999764 3 4667788777777888888887777666654 355689999999999
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHH------HHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 85 HGLANEALVLFRRMLAEKV-EPNEVTAVAVLS------ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
.|++..|..+.++..+... .|+...+.-... .....|.++.|.+.+...... +......-..-.+.+.+.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHh
Confidence 9999999999999887642 466655543322 245667788888777666542 3333344456677889999
Q ss_pred CHHHHHHHHHhcCCC--ChHHHHH-HHHHHHhcCChHHHH-HHHHH----------------------------------
Q 038395 158 SLKDARLVFDRVNDK--DVVVWNS-MIVGYAMHGFGKDAL-QLFNE---------------------------------- 199 (480)
Q Consensus 158 ~~~~A~~~f~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~l~~~---------------------------------- 199 (480)
++++|..++..+..+ |..-|+- +..++.+-.+.-+++ .+|..
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999988764 4444333 333333222222222 33333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHhhhhcC----------CcCCcc--HHHHHHHHHHHcCCHHH
Q 038395 200 MCRIRLKPSDITFIGLLSACAHAGLVNE----GRRFFNTMKDEYA----------IEPKVE--HYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 200 m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~----------~~p~~~--~~~~li~~~~~~g~~~~ 263 (480)
+.+.|+++ +|..+.+.+-.....+- +..+...+... | -+|+.. ++-.++..|-+.|+++.
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 33344433 22223322222111111 11222222110 1 034433 44567888999999999
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 264 AYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 264 A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|..+++.. +-.|+ +..|..=.+.+...|+++.|...++++.+++-.|...-.--+.-..++++.++|.++.....+.|
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99999987 65676 44565666788899999999999999999887664332244455568899999999998887776
Q ss_pred C
Q 038395 342 V 342 (480)
Q Consensus 342 ~ 342 (480)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 4
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=9.3e-06 Score=78.11 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=152.4
Q ss_pred HHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHH
Q 038395 18 DLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A 91 (480)
.-+.+.|++.+|.-+|+...+ | +...|.-|.......++=..|+..+++..+ | |....-+|.-.|...|.-.+|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 345678889999888887654 3 457888888888888888888888888765 3 566777888888888999999
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 92 LVLFRRMLAEKVE--------PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 92 ~~~~~~m~~~g~~--------pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
++.++..+....+ ++..+-.. +.+.....+....++|-.+....+...|+.++..|.-.|--.|+++.|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9988887653210 00000000 1111222334455555555543355577888888888888899999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 164 LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI--TFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 164 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
..|+.... .|...||-|...++...+.++|+..|++.++ ++|+-+ -|+ |.-+|.+.|.+++|...|-.+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHH
Confidence 99988764 3778899999999988899999999998887 566643 344 4446888899999888876655
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=1.7e-05 Score=79.13 Aligned_cols=306 Identities=12% Similarity=0.085 Sum_probs=143.7
Q ss_pred hhHHHHHH--HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CCHHH
Q 038395 10 LYVSTSLV--DLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE-------------KDVVC 74 (480)
Q Consensus 10 ~~~~~~ll--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------~~~~~ 74 (480)
..+-.+++ +.|..-|+++.|.+-...++ +...|..|.+.|.+..++|-|.-.+..|.. ++ ..
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 33444444 34555677777765554443 445677777777777777777766666653 11 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
-.-..-.-.+.|..++|+.+|++-.. |-.+=..|-..|.+++|.++-+.--+. -+ ..+|.....-+-
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi-HL---r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI-HL---RNTYYNYAKYLE 869 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce-eh---hhhHHHHHHHHH
Confidence 11111223455666777776666443 222223344556666666554332211 11 123333344444
Q ss_pred hCCCHHHHHHHHHhcCCC-----------------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------
Q 038395 155 KCGSLKDARLVFDRVNDK-----------------------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-------- 203 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------- 203 (480)
..++.+.|++.|++...+ |...|.=...-+-..|+.+.|+.+|...+..
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C 949 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC 949 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence 455566665555543321 2222222223333455666666555544321
Q ss_pred --C----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC-C----cCCccHHHHHHHH--HHHcCCHHHH
Q 038395 204 --R----------LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA-I----EPKVEHYGCMVNL--LSRAGQVEEA 264 (480)
Q Consensus 204 --g----------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~----~p~~~~~~~li~~--~~~~g~~~~A 264 (480)
| -.-|....-.|...|-+.|++.+|..+|-+...-.+ + +.|. -..|... .++..+.-.|
T Consensus 950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred eccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHH
Confidence 0 012334444556666666666666666655441000 0 0000 0111111 1122234444
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH---------HHH-cCCC-CchhHHHHHHHHHHcCChhHHHHH
Q 038395 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY---------LIS-QNLA-NSGTYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 265 ~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~---------~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 333 (480)
-++|++.|... ..-+..|.+.|.+.+|+++.-+ +.+ ++|. ++....--.+.+.....+++|..+
T Consensus 1028 ArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1028 ARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555554221 1222345566666666554321 111 3443 454555555566666667777666
Q ss_pred HHHHH
Q 038395 334 RTLMK 338 (480)
Q Consensus 334 ~~~m~ 338 (480)
+-..+
T Consensus 1103 L~~ar 1107 (1416)
T KOG3617|consen 1103 LCLAR 1107 (1416)
T ss_pred HHHHH
Confidence 65543
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=0.00047 Score=68.87 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=192.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 038395 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVL 114 (480)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll 114 (480)
-|...|..+.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.| |...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3667888888899999999999999999764 345689999999999999999999998766543234 344444444
Q ss_pred HHHH-ccCChHHHHHHHHHHHHhCC---CCCchhHHHHHHHHHHhC-----------CCHHHHHHHHHhcCC-----CCh
Q 038395 115 SACG-QIGALESGRWIHSYIENSRN---IKVNVQVGTALINMYSKC-----------GSLKDARLVFDRVND-----KDV 174 (480)
Q Consensus 115 ~~~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~m~~-----~~~ 174 (480)
..|. +.+..+++..+-.++....+ -......|-.+.-+|... ....++.+.+++..+ |++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4453 56777887777777665211 111233444444445432 123456677776643 344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----------
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---------- 244 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---------- 244 (480)
..|- .--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++.+|+.+.+....++|....
T Consensus 481 if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 4443 3346778899999999999998766667778877777777788888888877766655443100
Q ss_pred --------cc----------------------------------------------------------------------
Q 038395 245 --------VE---------------------------------------------------------------------- 246 (480)
Q Consensus 245 --------~~---------------------------------------------------------------------- 246 (480)
..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 00
Q ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 247 -------------HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 247 -------------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.|....+.+.+.+..++|...+.+. ++.| ....|......+...|..++|.+.|..+..++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 1112223333334444444333333 2222 233344444455566777777888888888888877
Q ss_pred hhHHHHHHHHHHcCChhHHHH--HHHHHHhCC
Q 038395 312 GTYVLLSNIYAAIGNWDGVAR--VRTLMKEKG 341 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~ 341 (480)
....++..++.+.|+..-|.. ++..+.+.+
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 777888888888887666665 666665543
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.48 E-value=0.00074 Score=73.85 Aligned_cols=370 Identities=11% Similarity=0.043 Sum_probs=220.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCC
Q 038395 14 TSLVDLYARGGDVLSAEKLFATMPQRSLVS--LTTMLTCYAKQGEVAAARVLFDDMEE----KDVVCWNVMIDGYAQHGL 87 (480)
Q Consensus 14 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~ 87 (480)
......|...|++.+|..........+... ...........|+++.+...++.++. .+..........+...|+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 334455666677777766665555432211 11222334567888888888888752 122233444556677899
Q ss_pred hHHHHHHHHHHHHCC--C----CCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHhC
Q 038395 88 ANEALVLFRRMLAEK--V----EPNEV--TAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINMYSKC 156 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g--~----~pd~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~y~~~ 156 (480)
+++|..++.+....- . .|... ....+...+...|+++.+...++.......... .....+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 999999998775431 1 11111 122223345678999999999998876311111 112445666778889
Q ss_pred CCHHHHHHHHHhcCC-------CC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHH
Q 038395 157 GSLKDARLVFDRVND-------KD--VVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RLK--P-SDITFIGLLSACA 220 (480)
Q Consensus 157 g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll~a~~ 220 (480)
|++++|...+++... +. ..++..+...+...|++++|...+++.... |.. | ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999887653 11 234556667788899999999998886542 221 1 2233444555667
Q ss_pred ccCCHHHHHHHHHHhhhhcC-CcCC--ccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHH-----HHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYA-IEPK--VEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPDSVLWG-----TLLGACR 288 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~li~a~~ 288 (480)
..|++++|...+........ ..+. ...+..+...+...|++++|.+.+.+. ........+. ..+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 78999999999888753211 1121 233444566778899999999888776 1111111111 1223445
Q ss_pred hcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHcCChhHHHHHHHHHHhC----CCccCCceeeEEeCCEEEEE
Q 038395 289 LHGNIALGEKIAEYLISQNLANSG----TYVLLSNIYAAIGNWDGVARVRTLMKEK----GVQKEPGCSSIELSNKVHEF 360 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~s~~~~~~~~~~~ 360 (480)
..|+.+.|...+.......+.... .+..+..++...|++++|...+++.... |........... .
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~-------l 737 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL-------L 737 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-------H
Confidence 678999998887765543222211 1356788899999999999999887653 221111000000 0
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 361 LAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
...+...++.+++...+.+.+..-...|+.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 111334566677777777766665566654
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.9e-05 Score=68.77 Aligned_cols=119 Identities=6% Similarity=0.044 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH-HhcCC--hhHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGAC-RLHGN--IALG 296 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~-~~~~~--~~~a 296 (480)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777766642 2445777888888888889999998888887 4455 467777777764 56666 4889
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.++++++++.+|.++.++..+...+...|++++|...++++.+..-
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999888899999999999999999999998876643
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=1e-05 Score=79.82 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=159.0
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666777788899999999999999999985 5788899999999999999999988777 4789999999999
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
..-+..-+++|.++++..... .-..+.....+.++++++.+.|+.- .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876532 0111111223468899999988865 5555 46788888888889999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
|.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999887743
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00015 Score=65.77 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---------------CHHHH--
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK---------------DVVCW-- 75 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~-- 75 (480)
+...|.+.|++++|..++.-+.+ ++...|..|.-.+.-.|.+.+|..+-...++. |..-|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 34556678888888888886653 45566777777776777788887776666531 11111
Q ss_pred ------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCCc
Q 038395 76 ------------NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS-ACGQIGALESGRWIHSYIENSRNIKVN 142 (480)
Q Consensus 76 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 142 (480)
-+|.+..-..-.+.+|+++|.+.+.. .|+-...+.-+. +|.++.-++.+.+++.-..+ .++.+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdS 218 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDS 218 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCc
Confidence 12233333334577888888887764 355555554443 34566666777777776665 34444
Q ss_pred hhHHHHH
Q 038395 143 VQVGTAL 149 (480)
Q Consensus 143 ~~~~~~l 149 (480)
+..-|..
T Consensus 219 tiA~NLk 225 (557)
T KOG3785|consen 219 TIAKNLK 225 (557)
T ss_pred HHHHHHH
Confidence 4444433
No 103
>PLN02789 farnesyltranstransferase
Probab=98.44 E-value=8.5e-05 Score=69.55 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+++.+-..+...++.++|+.++.++++. .|+. .+|..--.++...+ ++++++..++.+.+. .+.+..+|+....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHH
Confidence 4555556666677777777777777763 4433 34444444445555 456777777666653 3445555555444
Q ss_pred HHHhCCCH--HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038395 152 MYSKCGSL--KDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226 (480)
Q Consensus 152 ~y~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 226 (480)
++.+.|+. +++..+++++.+ +|..+|+.....+...|+++++++.++++.+.+.. |...|+.....+.+.+...
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 44455542 445555554443 34556666666666666666666666666554432 2333333322222221000
Q ss_pred HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----CChhHHHHHH
Q 038395 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH----GNIALGEKIA 300 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~----~~~~~a~~~~ 300 (480)
+ .....+++.++..++ ...| |...|+-+...+... +...+|...+
T Consensus 194 -------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 194 -------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred -------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 0 000123344444333 3344 456676666666553 3345577777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcC------------------ChhHHHHHHHHHH
Q 038395 301 EYLISQNLANSGTYVLLSNIYAAIG------------------NWDGVARVRTLMK 338 (480)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 338 (480)
.++...+|.++.+...|+..|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 7777777777777777888887532 2366888887773
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=2.6e-05 Score=70.40 Aligned_cols=181 Identities=14% Similarity=0.047 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch---hHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-Ch---H
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV---QVGTALINMYSKCGSLKDARLVFDRVND--K-DV---V 175 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~---~ 175 (480)
.....+......+...|+++.|...++.+.+. .+.+. ..+..+...|.+.|++++|...|+++.+ | +. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 35667888888899999999999999999874 23332 4667888999999999999999998864 2 12 2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCcc
Q 038395 176 VWNSMIVGYAMH--------GFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
++..+..++.+. |+.++|.+.|+++... .|+.. ....+... .. .. .... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHHH---------H
Confidence 455566666654 7889999999999875 45432 22221111 00 00 0000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM----KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
....+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1124567788999999999988887 2223 356888999999999999999998888876655
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00031 Score=67.41 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=123.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----HHHHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP--S----DITFIGLLS 217 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~ 217 (480)
...+.++..+..+++.|.+-+.....- +..-++....+|...|++.+....-....+.|-.. + ...+..+-.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 455666666666777776666655432 33334445556666666555554444443333210 0 011222233
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHH-------------------------HHHHHHHHHcCCHHHHHHHHHhC-
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY-------------------------GCMVNLLSRAGQVEEAYKLVMDM- 271 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m- 271 (480)
++.+.++.+.|...|......+ ..|+...- -.=...+.+.|++..|...+.++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4555566666666666655432 22222110 01133456788999999999888
Q ss_pred CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 272 KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 272 ~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
...| |...|....-+|.+.|++..|+.-.+..++++|+....|.-=..++....+|+.|.+.|++-.+..
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345 578888888899999999999999999999999988888877888888889999999888776654
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=2.1e-05 Score=77.67 Aligned_cols=206 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 126 (480)
+...+.++|-..+|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||+..|..+.+......-+++|
T Consensus 404 laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 344445555555555555543 3444455555555555555555444444 244555555555444444444444
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.++.+..... ....+.....+.++++++.+.|+.-.. --..+|-.+..+..+.++++.|.+.|..-..
T Consensus 477 wElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 477 WELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 4444333221 111111112224455555555543322 1233454444455555555555555554433
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 204 RLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 204 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
..|| ...|+.+-.+|.+.++-.+|...+.+..+ +. .-+...|...+....+.|.+++|.+.+.++
T Consensus 548 -L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 548 -LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred -cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 2333 23455555555555555555555555442 12 222333333444444555555555555444
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.39 E-value=0.00017 Score=71.35 Aligned_cols=239 Identities=14% Similarity=0.166 Sum_probs=140.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
|.+-.....|.+|+.+++.++... .-.--|..+..-|+..|+++.|.++|...- .++-.|+||.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 344556677888888887776642 223346667777888888888888776542 24566788888888
Q ss_pred HHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChHHHHHHH-------------HHH------HH--cCCCCC--HHHHH
Q 038395 159 LKDARLVFDRVNDK--DVVVWNSMIVGYAMHGFGKDALQLF-------------NEM------CR--IRLKPS--DITFI 213 (480)
Q Consensus 159 ~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m------~~--~g~~p~--~~t~~ 213 (480)
+++|.++-.+...| .+..|-+-..-+-.+|++.+|.++| ++. .+ ....|+ ..|-.
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 88888887776655 2334444444444455544444433 221 10 001222 23455
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCC-C---CHhHHHH------H
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE-P---DSVLWGT------L 283 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p---~~~~~~~------l 283 (480)
.+..-+-..|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-|-. . -...|.. -
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHH
Confidence 56666677788888877665544 2567788888899999998887665311 1 1223321 1
Q ss_pred HHHHHhcCC-------------hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 284 LGACRLHGN-------------IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 284 i~a~~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+..+-++|- ++.|..+.+...+.. .+....-+..-+-..|++++|-+-+-+..+.+
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 222333443 333444333333322 22345556666778899999988777666554
No 108
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.002 Score=62.76 Aligned_cols=307 Identities=9% Similarity=0.083 Sum_probs=152.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHH--HHH--HHHcCCh
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVM--IDG--YAQHGLA 88 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l--i~~--~~~~g~~ 88 (480)
=++.+.+.|++++|.+...++.. | +......-+-+..+.+++++|+.+.+.-..- .+++.. =.+ .-+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 35677788888888888877764 3 4455666666777788888888665543321 122222 233 3356777
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-chh----------------------
Q 038395 89 NEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQ---------------------- 144 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~---------------------- 144 (480)
++|+..++ |..++. .+...-...|-+.++++++..+|+.+.+. +.+. +..
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 77777766 333333 35555555677777777777777777654 2111 111
Q ss_pred ----HHHHH---HHHHHhCCCHHHHHHHHHhcC--------CCC-----hH-----HHHHHHHHHHhcCChHHHHHHHHH
Q 038395 145 ----VGTAL---INMYSKCGSLKDARLVFDRVN--------DKD-----VV-----VWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 145 ----~~~~l---i~~y~~~g~~~~A~~~f~~m~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
+|..+ .-.+...|++..|+++++... +.| .. .--.|.-.+...|+..+|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 12111 223344555555555555441 110 00 111122334445555555555555
Q ss_pred HHHcCCCCCHHH----HHHHHHHHHccCCHHH--HHHHHHHhhhhc----------CCcCCccHHHHHHHHHHHcCCHHH
Q 038395 200 MCRIRLKPSDIT----FIGLLSACAHAGLVNE--GRRFFNTMKDEY----------AIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 200 m~~~g~~p~~~t----~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
.+... .+|... -|.|+ +.....++-. ++..++...... .-.-...--++++.+| .+.-+.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 55442 223211 11111 1111111111 111111110000 0000000112222222 234445
Q ss_pred HHHHHHhCC-CCCCHhHHHHHHHHHH-hcC-ChhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHcCChhHHHHHHH
Q 038395 264 AYKLVMDMK-IEPDSVLWGTLLGACR-LHG-NIALGEKIAEYLISQNLAN-SGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 264 A~~~~~~m~-~~p~~~~~~~li~a~~-~~~-~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+.++-...+ ..|. ..+.+++..+. ... ....+..++....+..|.+ ......++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555553 2333 34444544433 222 3666777777777777876 3455667777889999999999999
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=7.6e-05 Score=76.96 Aligned_cols=158 Identities=9% Similarity=0.026 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGC 250 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 250 (480)
++..+-.|.....+.|.+++|..+++...+ +.||. .....+...+.+.+.+++|....++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 577788888888999999999999999887 46665 45566778888999999999999988842 555 566677
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChh
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (480)
+..++.+.|++++|..+|++. ...|+ ..+|..+..++...|+.++|...|+++++...+-...|+-++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 778888999999999999988 23444 778888889999999999999999999986655445554333 2333
Q ss_pred HHHHHHHHHHhCC
Q 038395 329 GVARVRTLMKEKG 341 (480)
Q Consensus 329 ~a~~~~~~m~~~~ 341 (480)
.-...++.+.-.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (694)
T PRK15179 234 ADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHcCccc
Confidence 3444555554333
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=8.9e-05 Score=64.78 Aligned_cols=154 Identities=12% Similarity=0.120 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
..+-..+...|+.+....+....... ..-|............+.|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555555555555555543321 112333333455555666666666666666652 334556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 258 AGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
.|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.+...-..|.......|++++|..+-
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 3333 34556666666666677777777666666666666666666666666667766666553
No 111
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.35 E-value=7.7e-07 Score=53.35 Aligned_cols=35 Identities=43% Similarity=0.761 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 107 (480)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.35 E-value=1.6e-05 Score=65.47 Aligned_cols=107 Identities=9% Similarity=-0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
+.....++...|++++|...|+.... +.| +...+..+..++.+.|++++|...|++. ...| +...|..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 33445566677777777777777663 233 4556666677777777777777777776 3334 4666777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
..|+.++|...++.+++..|+++..+.....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 777777777777777777777766665544443
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00038 Score=61.87 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=77.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-------------ch-----
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-------------NV----- 143 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~----- 143 (480)
..+.|++++|++-|+...+-|--.....|+..+.- .+.++...|.....+++.+ |+.. |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccc
Confidence 34566777777777766654333334455544433 3456667777766666665 4321 10
Q ss_pred ----------hHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 144 ----------QVGTALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 144 ----------~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
..+|.-...+.+.|+++.|.+.+-.|+.+ |.+|...+.-. -..+++.+..+-+.-+.+.+. ..
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CC
Confidence 11122223345566777777777777643 44444333211 113344444444444444332 23
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
..||..++-.||+..-++.|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45666666667776666666665543
No 114
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=0.00085 Score=62.88 Aligned_cols=209 Identities=11% Similarity=0.011 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHG-LANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
++..+-..+...++.++|+.+.+++.+ | +..+|+.--..+...| .++++++.++++.+.. +-+..+|+...-.+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 566666777788899999999999875 3 4456777666777777 6799999999998864 334556765555555
Q ss_pred ccCCh--HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhc---CCh
Q 038395 119 QIGAL--ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMH---GFG 190 (480)
Q Consensus 119 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~---g~~ 190 (480)
+.+.. +.+..+.+.+.+. -+.|..+|+....++.+.|+++++++.++++.+ +|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 66653 6778888888863 566888999999999999999999999999876 4777888877666554 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 191 ----KDALQLFNEMCRIRLKPSDITFIGLLSACAHA----GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 191 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
+++++...++.... +-|...|+.+...+... +...+|..++...... + ..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-D-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHh
Confidence 45666666666542 22455666666666552 3345566666665531 1 2234455666676664
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=1.4e-05 Score=65.81 Aligned_cols=106 Identities=7% Similarity=-0.041 Sum_probs=91.0
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+.+|
T Consensus 15 ~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 23454 3556778889999999999999998 5555 588899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 309 ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.++.++..+..++...|+.++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987654
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1e-06 Score=52.78 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD 209 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 209 (480)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=8.2e-05 Score=64.77 Aligned_cols=153 Identities=11% Similarity=0.132 Sum_probs=106.3
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
+-.|...|+++......+.+..+. ..|...++.++++..++...+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777777766654443332221 01122556677777777766643 446677888888888888888888
Q ss_pred HHHHHhhhhcCCcC-CccHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 230 RFFNTMKDEYAIEP-KVEHYGCMVNL-LSRAGQ--VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 230 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
..|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888774 244 46667777775 467676 48888888887 4455 5778888888899999999999999999
Q ss_pred HHcCCCCchhH
Q 038395 304 ISQNLANSGTY 314 (480)
Q Consensus 304 ~~~~~~~~~~~ 314 (480)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99888765443
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00033 Score=73.26 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=120.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV-VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
+...|..|+..|...+++++|.++.+...+ |+. ..|-.+...+.+.++.+++..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 445677777777777777777777765443 322 2333333355555655554444 222 22
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
.....++.....+...+.. ...+...+-.|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222233223333333332 223334555566666666666666666666554 3555666666666666 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038395 194 LQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 194 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (480)
.+++.+.... +...+++..+.+++..+..- .|+ ...+-.+.. .+...++
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~------------ki~~~~~ 218 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIER------------KVLGHRE 218 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHH------------HHHhhhc
Confidence 6666655432 33344555555555555521 222 111111111 1111112
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 273 ~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...-+.++-.+-..|...++++.+..+++.+++.+|.|..+..-++..|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22334455555666677777777777777777777777666666666665
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.001 Score=68.80 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=137.6
Q ss_pred HHHHHHHHHcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 76 NVMIDGYAQHGLANEA-LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A-~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
+.+=.+.+.-|..++| .++.++..+ ++...++......++.-.....+ ..+.++..+-.|.....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVARALE 97 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHHHHHH
Confidence 3333444555665555 334444332 33333333333333333333333 46677889999999999
Q ss_pred hCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 038395 155 KCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
..|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+ ......+..++...|+.++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999875 4 5677888999999999999999999999885 455 4556667778899999999999
Q ss_pred HHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHH
Q 038395 231 FFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLG 285 (480)
Q Consensus 231 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~ 285 (480)
+|+++... .|+ ...+..+...+-..|+.++|...|++. ...|.+..|+.++.
T Consensus 176 ~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 176 CFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999952 344 778888899999999999999999988 33455566655543
No 120
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.3e-06 Score=50.89 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP 105 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 105 (480)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00042 Score=65.87 Aligned_cols=136 Identities=18% Similarity=0.102 Sum_probs=79.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-VQVGTALINMYSKC 156 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~ 156 (480)
.-.+...|.+++|+..++.+... .|| ..........+...++.++|.+.++.+... .|+ ..+.-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33445566666666666666654 333 333334444566666666666666666642 333 45555666666666
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038395 157 GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFN 233 (480)
Q Consensus 157 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 233 (480)
|+..+|.++++.... .|...|..|..+|...|+..+|..-.-++ +...|++++|...+.
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~ 449 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLM 449 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHH
Confidence 776666666665543 25566666777777666666666555543 233455666666555
Q ss_pred Hhhh
Q 038395 234 TMKD 237 (480)
Q Consensus 234 ~m~~ 237 (480)
...+
T Consensus 450 ~A~~ 453 (484)
T COG4783 450 RASQ 453 (484)
T ss_pred HHHH
Confidence 5554
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.0068 Score=58.56 Aligned_cols=148 Identities=9% Similarity=0.143 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHH
Q 038395 190 GKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKL 267 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 267 (480)
.+...+.++++...- ..| ..+|...++.-.+..-++.|+.+|.++.++ +..+ ++.++++++.-|+ .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 445555666655432 333 346777788888888889999999999876 4445 7888888888766 5678888888
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 268 VMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQ--NLA-NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 268 ~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|+-- ..-+| +.--...+.-+...++-..+..+|++++.. .|+ ....|..++.-=+.-|+...+.++-+++...
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8754 22344 344456667777778888899999998886 332 3357888888888889999888887777543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00028 Score=67.03 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 159 LKDARLVFDRVND------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 159 ~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+.++++.-+.++. ++...+...+.+.........+..++.+-.+ ..-...-|..-+ .....|..++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 4445555555553 2444555555544433333333333332222 111233344444 345678999999999
Q ss_pred HHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 233 NTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 233 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+.+.+. .|+ +.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+|..+++.....+|+
T Consensus 330 ~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 330 QPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 998854 454 556667788999999999999999998 56676 677788889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 310 NSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
++..|..|..+|...|+..++...+.++-
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999988888877664
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=5.7e-05 Score=72.17 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=97.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666677778888888888888753 344 4455777777788888888888776 3234 5666666677788
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..++++.|+.+++++.+..|.+..+|..|+.+|...|++++|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=3.4e-06 Score=50.13 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 207 (480)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0017 Score=66.94 Aligned_cols=283 Identities=13% Similarity=0.116 Sum_probs=184.8
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
+-+++|..+|++.. -+..+.+.||. .-+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1062 ~LyEEAF~ifkkf~-~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFD-MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hHHHHHHHHHHHhc-ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 34455555555432 13333333333 245666676666666655 56889999999999999998887442
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC------------
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND------------ 171 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------ 171 (480)
-|+..|..++.++.+.|.+++-..++....+. .-.|. +-+.|+-+|++.+++.+.+++...-..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence 36778999999999999999999988888776 55554 446788899999988887666532110
Q ss_pred -----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC
Q 038395 172 -----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 172 -----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 240 (480)
.++.-|..|...++..|.+..|.+--++. .+..||..+-.+|...+.+.-|. |. ...
T Consensus 1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iC-GL~ 1274 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----IC-GLN 1274 (1666)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hc-Cce
Confidence 14445666777777777777777665543 25568888888888776655443 32 112
Q ss_pred CcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 241 IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 241 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
+.....-..-|+..|-..|.+++...+++.. |++. ....|+-|.-.|.+-+ +++..+.++.....- ..--++
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRv-----NipKvi 1348 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRV-----NIPKVI 1348 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhc-----chHHHH
Confidence 2233444667888999999999999998876 6543 4566777766666653 444444444333211 112367
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 038395 319 NIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+++-.+--|.+..-++..-.+
T Consensus 1349 RA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 777777788887777665443
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0043 Score=54.61 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=64.0
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCh
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS----RAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~ 293 (480)
.+..+++-|.+.++.|.. -.+..+.+.|..++. ..+.+.+|.-+|++| +..|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 344455555555555542 122333333333332 234566666666666 3456666666666666677777
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH-HHHHHHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV-ARVRTLMK 338 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 338 (480)
++|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.+++
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7777777777777766666666655555555555433 33444443
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00028 Score=61.76 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=126.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 45 TTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 45 ~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
..+-..+...|+-+.+..+...... .|....+.++....++|++.+|+..|++.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 6667777788888888888777543 35556777899999999999999999998875 4778899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
+++.|..-|.+..+. .+-+....|.|.-.|.-.|++++|..++..... .|...-..+.......|++++|.++-.
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999999985 344566788888888889999999999987643 477778888888889999999998876
Q ss_pred HHH
Q 038395 199 EMC 201 (480)
Q Consensus 199 ~m~ 201 (480)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=8.6e-05 Score=70.98 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
.+|+..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++.+..+ ..+.+..........+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 345555666677777777777777653 443 23355566666666677777666665 345556666666667777
Q ss_pred CCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
.++++.|+++.+++.+ | +..+|..|..+|.+.|+++.|+-.++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7777777777777664 3 4457777777777777777777777655
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=5.4e-05 Score=61.67 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
......+...+.+.|++++|.+.|+.. ...| +...|..+...+...|+++.|...++.+++.+|+++..+..+...|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777888888888888776 3334 56777788888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 038395 323 AIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~~ 341 (480)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888888776653
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.10 E-value=0.0018 Score=67.97 Aligned_cols=234 Identities=9% Similarity=0.089 Sum_probs=158.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSL-VSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQ 84 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 84 (480)
.+...+-.|+..|...+++++|.++.+.-.+ |+. ..|-.+...+.+.++.++|..+ .++.....
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 3566889999999999999999999986553 443 3344444467777776666555 33444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038395 85 HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 164 (480)
..++.-...++..|... .-+...+..+..+|-+.|+.+++..+++++.+. . +.|+.+.|.+...|+.. ++++|.+
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 45554444444555542 334557888899999999999999999999986 3 67888999999999999 9999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC
Q 038395 165 VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT-FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243 (480)
Q Consensus 165 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 243 (480)
.+.+.. ..|...+++.++.++|.++... .|+... |..+++ .+....+..-
T Consensus 171 m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~ 221 (906)
T PRK14720 171 YLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTR 221 (906)
T ss_pred HHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccch
Confidence 887753 3367777899999999998874 343332 222222 2222212222
Q ss_pred CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
-+.++-.+...|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2344555666677788888888888877 4444 4555566666655
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.0014 Score=66.08 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=163.3
Q ss_pred CCCChhHHHHHHHH--HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCC
Q 038395 37 PQRSLVSLTTMLTC--YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE---------KVEP 105 (480)
Q Consensus 37 ~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p 105 (480)
.+-|..|-.+++.. |..-|++|.|.+-.+-+. +...|..|.+.+.+..+.+-|.-.+-.|... .-.|
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 34477777777754 788899999988877765 4578999999999998888776665555321 1123
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CChHHHHHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-KDVVVWNSMIVGY 184 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~ 184 (480)
+ .+=.-+.-....+|.+++|+.+|++-++. ..|=..|...|.+++|.++-+.-.. .=..+|.....-+
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 2 22222223346789999999999998864 4555678889999999888654322 1123555555556
Q ss_pred HhcCChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 185 AMHGFGKDALQLFNEM----------CRIR---------LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
-..++.+.|++.|++- .... -.-|...|.--....-..|+++.|+.+|...+.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 6677788888777653 1111 012333344444445567888888888887763
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
|-+++...|-.|+.++|-++-++-| |......|.+-|-..|++.+|...|.++..
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4566777777888888888877754 555556677888888888888877766554
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0015 Score=57.27 Aligned_cols=250 Identities=14% Similarity=0.031 Sum_probs=156.3
Q ss_pred HHHhcCCHHHHHHHHhhcC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 038395 50 CYAKQGEVAAARVLFDDME-E-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGR 127 (480)
Q Consensus 50 ~~~~~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 127 (480)
-+.-.|.+..++..-+... . .++..---+-++|...|.+...+.- ... |-.|....+..+......-++.+.-.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 3444566666655544432 2 2333334455667777766544332 111 22333334433333344444444333
Q ss_pred -HHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038395 128 -WIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK 206 (480)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 206 (480)
.+.+.+... ....+......-...|++.|++++|++.......-+....| +..+.+..+.+-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i--- 166 (299)
T KOG3081|consen 93 ASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI--- 166 (299)
T ss_pred HHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---
Confidence 344444443 44444444444556788999999999999884433333333 44556778899999999999873
Q ss_pred CCHHHHHHHHHHHH----ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHH
Q 038395 207 PSDITFIGLLSACA----HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLW 280 (480)
Q Consensus 207 p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~ 280 (480)
-+..|.+-|.+++. ..+.+..|.-+|++|.. ...|+..+.+-+.-+....|++++|..+++.. .-..++.+.
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 25667776766664 34678899999999985 35788888888888888999999999999888 333456676
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCc
Q 038395 281 GTLLGACRLHGN-IALGEKIAEYLISQNLANS 311 (480)
Q Consensus 281 ~~li~a~~~~~~-~~~a~~~~~~~~~~~~~~~ 311 (480)
..++..-...|. .+...+...++....|..+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666665555554 4556677777777777654
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.09 E-value=0.00037 Score=71.47 Aligned_cols=61 Identities=13% Similarity=-0.060 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
...+|..+...+....|++-|...|.....++|.+...|......-...|+.-++..+|..
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4566777767777888999999999999999999988888887777888888888888876
No 135
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0069 Score=62.66 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=157.8
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
+.++.|.+.-++..+| ..|..+..+-.+.|.+.+|++-|-+.. |...|.-+|....+.|.+++-.+.+.-.++..-
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 3455555555544443 569999999999999999998886655 557788999999999999999998887777766
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC------------
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND------------ 171 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------ 171 (480)
.|...+ .++-+|++.+++.+.+.+. ..||......+.+-+...|.++.|.-+|.....
T Consensus 1165 E~~id~--eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1165 EPYIDS--ELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred CccchH--HHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666554 5777888888777655543 234444444444444445555555444443321
Q ss_pred ------------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 172 ------------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 172 ------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
.+..+|...-.+|...+.+.-| +|-..++-.-..-...++.-|...|-+++-..+++...
T Consensus 1235 eyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--- 1306 (1666)
T KOG0985|consen 1235 EYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--- 1306 (1666)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---
Confidence 2566787777777766554322 33333344455667789999999999999999888765
Q ss_pred CCcC-CccHHHHHHHHHHHcCCHHHHHH---HH-HhCCCC------CCHhHHHHHHHHHHhcCChhHH
Q 038395 240 AIEP-KVEHYGCMVNLLSRAGQVEEAYK---LV-MDMKIE------PDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 240 ~~~p-~~~~~~~li~~~~~~g~~~~A~~---~~-~~m~~~------p~~~~~~~li~a~~~~~~~~~a 296 (480)
|++. ....|+-|.-.|++- ++++..+ +| .+..+. -....|+-+.-.|.+-..++.|
T Consensus 1307 GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1307 GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5433 344566666667654 3344333 33 222211 1234566665555555544443
No 136
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0042 Score=59.87 Aligned_cols=315 Identities=14% Similarity=0.089 Sum_probs=195.8
Q ss_pred HHHHhcCChHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCH-HHHHHHHHHHHHcCChHHH
Q 038395 18 DLYARGGDVLSAEKLFATMP---QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDV-VCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A 91 (480)
++....|+++.|...|.... .+|.+.|..-..+|.+.|++++|++=-.+-.+ |+. -.|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 45567899999999999765 35788899999999999999999886666554 554 3789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhCCCCC-----chhHHHHHHH----------HH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQI---GALESGRWIHSYIENSRNIKV-----NVQVGTALIN----------MY 153 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~----------~y 153 (480)
+..|.+-++.. +-|...+..+..+.... ++.-..-.++..... .+. ....|..++. .|
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~---~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN---LPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc---ChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988752 33566777777776211 011111111211111 000 0111222222 12
Q ss_pred HhCCCHHHHHHHHHhcC----------------CC------------C----------hHHHHHHHHHHHhcCChHHHHH
Q 038395 154 SKCGSLKDARLVFDRVN----------------DK------------D----------VVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~ 195 (480)
....++..|.-++.... .| | ..-.-.+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 22122233332222110 01 1 0124456677777888888998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh-------cCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 196 LFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE-------YAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 196 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
-+....+.. -+..-++....++...|...+....-....+. +.+ =...+..+..+|.+.++++.|...|
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl--Iak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL--IAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH--HHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 888887753 23333445555666666665554444333322 111 0111222444677778888888888
Q ss_pred HhC---CCCCCHhH-------------------------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 269 MDM---KIEPDSVL-------------------------WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 269 ~~m---~~~p~~~~-------------------------~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
++. -..|+..+ ...=...+.+.|++..|...+.++++.+|+++..|....-+
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 765 11122111 11113456788999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 038395 321 YAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~ 340 (480)
|.+.|.+..|++=-+...+.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 99999999999876666554
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.03 E-value=8.5e-05 Score=60.48 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
..-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|...+..+..++|+++.++..+..+|...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3344555667899999999999988 4455 4677888999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 038395 325 GNWDGVARVRTLMKEK 340 (480)
Q Consensus 325 g~~~~a~~~~~~m~~~ 340 (480)
|+.+.|.+-|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987653
No 138
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.03 E-value=0.01 Score=54.14 Aligned_cols=297 Identities=13% Similarity=0.053 Sum_probs=216.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHH---HHHHhcCCHHHHHHHHhhcCCCCHHHHHHH---HHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTML---TCYAKQGEVAAARVLFDDMEEKDVVCWNVM---IDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~ 83 (480)
+.----|...+...|++.+|+.-|....+-|+..|.++- ..|...|+-..|+.-|++..+--...+.+- ...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 333334567777889999999999999887777777664 467888888888888888765322233332 34578
Q ss_pred HcCChHHHHHHHHHHHHCCCC------------CCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 84 QHGLANEALVLFRRMLAEKVE------------PNE--VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~------------pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
+.|.+++|..=|+..++.... +-. ......+..+...|+...+......+.+. .+-|...+..-
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~R 195 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQAR 195 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHH
Confidence 899999999999999875321 111 12344556677789999999999999973 56688899999
Q ss_pred HHHHHhCCCHHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----HHH-------
Q 038395 150 INMYSKCGSLKDARLVFDRVN---DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF----IGL------- 215 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~l------- 215 (480)
..+|...|++..|+.=+.... ..+....--+-..+...|+.+.++...++-.+ +.||.... ..|
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHH
Confidence 999999999999977666544 45677777778888899999999999888776 56776432 111
Q ss_pred --HHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH
Q 038395 216 --LSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA 286 (480)
Q Consensus 216 --l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a 286 (480)
+......+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++.-.+. .+.|+ +.++.--..+
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11233456666676666666532 344 223344556677789999999888777 66676 7888888889
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
|.....++.|..-|+.+.+.++++..+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 999999999999999999999987543
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=9.8e-06 Score=46.90 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.1e-05 Score=46.64 Aligned_cols=31 Identities=39% Similarity=0.633 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877663
No 141
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.016 Score=53.02 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=169.1
Q ss_pred hcCCHHHHHHHHhhcCC--CCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHH
Q 038395 53 KQGEVAAARVLFDDMEE--KDVVCWNV-MIDGYAQHGLANEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRW 128 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~ 128 (480)
..-.+.+|++++.+... |+-...|. +.-+|.+...++-+.+++.-.++. -||. ...+..+....+.=+-..+.+
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 33457889999988775 44445554 345678888888888888777664 3443 333333322222111111111
Q ss_pred ----H----------HHHHHHhC-----CC------CC-----chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHH
Q 038395 129 ----I----------HSYIENSR-----NI------KV-----NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWN 178 (480)
Q Consensus 129 ----~----------~~~~~~~~-----~~------~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~ 178 (480)
+ .+.+.++. +. -| =+..-..|+--|.+.+++.+|..+...+...+..-|-
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Eyi 320 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYI 320 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHH
Confidence 1 11111110 00 00 0122334555688899999999998887654443332
Q ss_pred HHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHH
Q 038395 179 SMIVGYAMHG-------FGKDALQLFNEMCRIRLKPSDIT-FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGC 250 (480)
Q Consensus 179 ~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 250 (480)
.-.-.++..| +..-|.+.|+-.-+.+..-|.+. -.++.+++.-..++++...+++.++. +=...|...+ .
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N 398 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-H
Confidence 2222223333 34566666666655655544432 23344455556688999998888874 3333344444 4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHH-HHHHhcCChhHHHHHHHHHHHcC-CCC-chhHHHHHHHHHHcC
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLL-GACRLHGNIALGEKIAEYLISQN-LAN-SGTYVLLSNIYAAIG 325 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li-~a~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g 325 (480)
+.++++..|.+.+|+++|-++ +.+ .|..+|.+++ +.|...+.++.|-.+ +++.+ |.+ ......+.+-|.+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHH
Confidence 688999999999999999888 222 4667776655 566777888877554 44433 322 234456788899999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 038395 326 NWDGVARVRTLMKEKGV 342 (480)
Q Consensus 326 ~~~~a~~~~~~m~~~~~ 342 (480)
.+--|.+.|+.+.....
T Consensus 476 eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHhhhHHHccCC
Confidence 99999999998876554
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.004 Score=54.39 Aligned_cols=163 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
..++-+...+|+.+.|...++++..+ -+.-..+| -+-..|++++|+++++...+.. +.|.+++..=+-..-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 33444445566666666666655432 11112222 2345788888888888888775 4466777666656666
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHh---cCChhHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRL---HGNIALG 296 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~---~~~~~~a 296 (480)
.|..-+|.+-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -++|. +..+..+...+-. ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777788888887775 45678888999999999999999999999888 34453 4444444444433 3467789
Q ss_pred HHHHHHHHHcCCCCchhH
Q 038395 297 EKIAEYLISQNLANSGTY 314 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~ 314 (480)
.+++.+.+++.|.+...+
T Consensus 211 rkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHhChHhHHHH
Confidence 999999999998654443
No 143
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.88 E-value=0.0033 Score=64.85 Aligned_cols=173 Identities=16% Similarity=0.067 Sum_probs=121.2
Q ss_pred hHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038395 26 VLSAEKLFATMPQRSL---VSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRML 99 (480)
Q Consensus 26 ~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (480)
...|...|-+..+.|+ ..|..|...|....+...|.+.|+..-+- |..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4555555554444333 57888888888888889999999987763 56788999999999999999998833322
Q ss_pred HCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHH
Q 038395 100 AEKVEPN---EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVV 176 (480)
Q Consensus 100 ~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 176 (480)
+. .|- ..-|....-.+...++...+..-++...+ --+.|...|..|+.+|..+|++..|.++|.+...-++.+
T Consensus 554 qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 554 QK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 21 111 11222333446677888888888888876 356688899999999999999999999998877644333
Q ss_pred HHH---HHHHHHhcCChHHHHHHHHHHHH
Q 038395 177 WNS---MIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 177 ~~~---li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
|-. ....-+..|.+.+|+..+.....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222 22234567888888888777654
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00027 Score=52.72 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...++...+..|.+...+..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 33443 4667777788888888999999999988888887778888888899999
Q ss_pred ChhHHHHHHHHHHhC
Q 038395 326 NWDGVARVRTLMKEK 340 (480)
Q Consensus 326 ~~~~a~~~~~~m~~~ 340 (480)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999998888777543
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.84 E-value=0.00059 Score=55.45 Aligned_cols=88 Identities=10% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGF 189 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 189 (480)
+...+...|++++|...++.+... .+.+...+..+...|.+.|++++|...|+.... .+...|..+...|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 333344444444444444444432 122334444444444444444444444443321 123334444444444455
Q ss_pred hHHHHHHHHHHHH
Q 038395 190 GKDALQLFNEMCR 202 (480)
Q Consensus 190 ~~~A~~l~~~m~~ 202 (480)
+++|+..|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444444
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.051 Score=55.86 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 038395 280 WGTLLGACRLHGNIA---LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346 (480)
Q Consensus 280 ~~~li~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 346 (480)
-+.|+..+.+.++.. +|.-+++..+...|.|..+-..|+.+|+-.|-+..|.++++.|.-++++.+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 457778888888765 5666677777788888888889999999999999999999999877776553
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.82 E-value=0.037 Score=53.68 Aligned_cols=335 Identities=10% Similarity=0.082 Sum_probs=205.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDG 81 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 81 (480)
+-|+.+|+.||.-+... ..++++..++++.. | ....|..-|..-.+..+++..+.+|.+... -++..|..-|+-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 45889999999988766 99999999999875 4 457899999999999999999999999775 478888888774
Q ss_pred HHHc-CChH----HHHHHHHHHH-HCCCCCCH-HHHHHHHH---HH------HccCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 82 YAQH-GLAN----EALVLFRRML-AEKVEPNE-VTAVAVLS---AC------GQIGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 82 ~~~~-g~~~----~A~~~~~~m~-~~g~~pd~-~t~~~ll~---~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
--+. |... ...+.|+-.+ +.|+.+-. ..|+.-+. .. ....+++..+.+++.+... .+..=...
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~nlEkL 174 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHNLEKL 174 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-ccccHHHH
Confidence 4332 3322 2334444433 34555432 23443333 22 2233566678888888754 22221112
Q ss_pred HH------HHHHH-------HHhCCCHHHHHHHHHhcCC---------C------------ChHHHHHHHHHHH------
Q 038395 146 GT------ALINM-------YSKCGSLKDARLVFDRVND---------K------------DVVVWNSMIVGYA------ 185 (480)
Q Consensus 146 ~~------~li~~-------y~~~g~~~~A~~~f~~m~~---------~------------~~~~~~~li~~~~------ 185 (480)
|+ .=|+- --+...+..|++++++... + -+..|-.+|.-=-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 21 11111 1123346667776665431 0 0112322222110
Q ss_pred ------------------------------------hcCC--------------hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 186 ------------------------------------MHGF--------------GKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 186 ------------------------------------~~g~--------------~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
..++ .+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22333333333221111122222222
Q ss_pred HHHHH---ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC-CHhHHHHHHHHHH
Q 038395 216 LSACA---HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 216 l~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~a~~ 288 (480)
...-- .....+....+++++.....+.|+. +|.+++..-.|..-+..|..+|.+. +..+ ++.+.++++.-+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~- 412 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY- 412 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-
Confidence 21110 1112445556666666544555554 5778888888999999999999998 3344 677777777655
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 345 (480)
..+|.+.|.++|+.-++.-++.+..-..-+.-+...|+-..+..+|++...+++.++
T Consensus 413 cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 413 CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 457889999999999998888876666778888899999999999999988866543
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00063 Score=53.72 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=51.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGA 286 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a 286 (480)
..+...+...|++++|...|..+.....-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555543211000 0123344555555556666665555554 21222 3345555556
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
+...|+.+.|...++++++..|++..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 666666666666666666666665433
No 149
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.034 Score=52.07 Aligned_cols=111 Identities=12% Similarity=0.187 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~ 289 (480)
.+.+..+.-|...|+...|.++-.. +.+ |+...|-..+.+|+..++|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455566677778888887776444 443 8888899999999999999998887654 3355788999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999988887762 2356678899999999998765443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.78 E-value=0.00094 Score=55.06 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=39.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 253 NLLSRAGQVEEAYKLVMDM-KIEPDS----VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
..+...|++++|...|+.. ...|+. .....|...+...|++++|+..++... ..+..+..+..+.++|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCH
Confidence 4444555555555555554 111221 122334445555555555555554321 1112233445566666666666
Q ss_pred hHHHHHHHH
Q 038395 328 DGVARVRTL 336 (480)
Q Consensus 328 ~~a~~~~~~ 336 (480)
++|...|+.
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 666666553
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.021 Score=50.07 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=136.2
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH
Q 038395 85 HGLANEALVLFRRMLA---EK-VEPNEV-TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~---~g-~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 159 (480)
..++++.++++.++.. .| ..|+.. .|-.++-+....++.+.|...++.+... ++-+..+.-.-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 3567778888877754 24 556665 4556666777889999999999998874 455555544444446667999
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 160 KDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 160 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
++|.++++.+.+. |.+++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998864 5566766677777788888999988888776 67799999999999999999999999999988
Q ss_pred hhcCCcCC-ccHHHHHHHHHHHcC---CHHHHHHHHHhC-CCCC
Q 038395 237 DEYAIEPK-VEHYGCMVNLLSRAG---QVEEAYKLVMDM-KIEP 275 (480)
Q Consensus 237 ~~~~~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p 275 (480)
- +.|. +..+..+.+.+--.| +++-|.++|.+. .+.|
T Consensus 182 l---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 L---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred H---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 3 3454 445566666654443 566778888776 5555
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=5.4e-05 Score=55.84 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHH
Q 038395 258 AGQVEEAYKLVMDM-KIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p---~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 333 (480)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777766666 1122 344555567777777777777777777 555555555556667777788888888777
Q ss_pred HHH
Q 038395 334 RTL 336 (480)
Q Consensus 334 ~~~ 336 (480)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.0037 Score=51.50 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc--hhHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN--VQVGTAL 149 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 149 (480)
|..++..+ ..++...+.+.++.+.... +.+ ......+...+...|++++|...++.+... .-.++ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33333333 2555555555555555531 111 112222333445555555555555555543 21111 1122334
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 199 (480)
...+...|++++|+..++....+ ....+......|.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555555555544332 223344444555555555555555543
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00074 Score=53.30 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLL 317 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 317 (480)
.++-.+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34566778889999999999999988 33343 3466778899999999999999999999988764 4578889
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC
Q 038395 318 SNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998774
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.095 Score=54.02 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.....|..++|..++..=..+.-..-+...-+--++.+...+++.+..++-.++
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 345567777777777332212111222333345566777777777766665555
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0015 Score=62.65 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=59.1
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~ 293 (480)
......|++++|...|+.+.+. .| +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3445566777777777666632 33 3445556666666667777766666665 3344 355566666666666677
Q ss_pred hHHHHHHHHHHHcCCCCchhHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
+.|...++++++++|.++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 77777777766666666544433
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.59 E-value=0.0003 Score=49.57 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=58.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG-NWDGVARVRTLMKE 339 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 339 (480)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999987765
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0043 Score=57.33 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA-CGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
.+|..++...-+.+..+.|.++|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888888888888887542 2234444443333 33356677788888888874 6777788888888
Q ss_pred HHHhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 152 MYSKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+.+.|+.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888887652 2357888888888888888888888887763
No 159
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.017 Score=50.74 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC---CCCh---------------------------------hHHHHHHHHHHhc
Q 038395 11 YVSTSLVDLYARGGDVLSAEKLFATMP---QRSL---------------------------------VSLTTMLTCYAKQ 54 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~---------------------------------~~~~~li~~~~~~ 54 (480)
..|+.-+.++.+....++|..-++... .||. .-|+.|+..+.-.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 356666777777777777765544332 2221 1355555555444
Q ss_pred CCHHHHHHHHhhcCCC--CH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 038395 55 GEVAAARVLFDDMEEK--DV--------VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE 124 (480)
Q Consensus 55 g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 124 (480)
.-+++-+..|+.-..| .+ ...+.++..+.-.|.+.-.+.++.+.++...+-++...+.+.+...+.|+.+
T Consensus 150 ~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k 229 (366)
T KOG2796|consen 150 TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK 229 (366)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH
Confidence 4445555555443322 22 2446677777778888888889999888765667888888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCchh-----HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038395 125 SGRWIHSYIENSRNIKVNVQ-----VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~-----~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
.|..+++...+. .-..|.. +.-.....|.-.+++..|...|++++. +|.+.-|.-.-+..-.|+...|++.
T Consensus 230 ~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 230 TAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 999999977765 3333333 333334456667888888888888775 3555666555555557888899999
Q ss_pred HHHHHHcCCCCCHHHHHH
Q 038395 197 FNEMCRIRLKPSDITFIG 214 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ 214 (480)
++.|.+. .|...+-++
T Consensus 309 ~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHES 324 (366)
T ss_pred HHHHhcc--CCccchhhh
Confidence 9988874 444444443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0017 Score=55.26 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
.+..+...|...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..+..+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666667777777766665 22222 356777777788888888888888888888887777777777777
Q ss_pred HHcCC
Q 038395 322 AAIGN 326 (480)
Q Consensus 322 ~~~g~ 326 (480)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 77665
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0056 Score=56.58 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
.+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888888889998887543 2333333344443 334577777999999998754 456777888899
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22333 3589999999999999999999999999987764
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00043 Score=48.09 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...+...|++++|...++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456667777778888888877777777777777777777888888887777777543
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.47 E-value=0.018 Score=53.45 Aligned_cols=124 Identities=13% Similarity=0.151 Sum_probs=67.6
Q ss_pred HHHHHHhC-CCHHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HH
Q 038395 149 LINMYSKC-GSLKDARLVFDRVND-----K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-----PSDI-TF 212 (480)
Q Consensus 149 li~~y~~~-g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~ 212 (480)
+...|-.. |+++.|.+.|++..+ . -...+..+...+.+.|++++|+++|++....-.. ++.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33345444 566666666555432 1 1234555677788888888888888887654322 1221 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhh-cCCcCC--ccHHHHHHHHHHH--cCCHHHHHHHHHhCC
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDE-YAIEPK--VEHYGCMVNLLSR--AGQVEEAYKLVMDMK 272 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 272 (480)
...+-++...|+...|...++..... .++..+ ......|+++|-. ...+++|..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 33333556678888888888887632 122222 2334555666543 345677777777763
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.0018 Score=49.07 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCC--------HHHHHHHHHHhhhhcCCcCCcc
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGL--------VNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~--------~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+... +-+.+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667999999999999999999 8999999999998776532 34556677777744 7888888
Q ss_pred HHHHHHHHHHH
Q 038395 247 HYGCMVNLLSR 257 (480)
Q Consensus 247 ~~~~li~~~~~ 257 (480)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.45 E-value=0.002 Score=47.74 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (480)
..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544431 1122333334444444444444444444444
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0019 Score=54.74 Aligned_cols=93 Identities=12% Similarity=-0.048 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 319 (480)
...+..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...++++++..|....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888888877 33332 3578888889999999999999999999998888777888888
Q ss_pred HHH-------HcCChhHHHHHHHHH
Q 038395 320 IYA-------AIGNWDGVARVRTLM 337 (480)
Q Consensus 320 ~~~-------~~g~~~~a~~~~~~m 337 (480)
+|. ..|++++|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 778888776666544
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0053 Score=48.25 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=70.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPN--EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINM 152 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~ 152 (480)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++..... .+. +..+...+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45667788999999999999988876654 335666777788888999998888888764 222 23333334446
Q ss_pred HHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYA 185 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 185 (480)
+...|+.++|.+.+-....++...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788887777776554444444444444443
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0037 Score=47.48 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCCchh
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNEVTAVAVLSACGQIG--------ALESGRWIHSYIENSRNIKVNVQ 144 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 144 (480)
+-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-..+.+++.+... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566667777999999999999999999 899999999999877653 244567888999888 8999999
Q ss_pred HHHHHHHHHHh
Q 038395 145 VGTALINMYSK 155 (480)
Q Consensus 145 ~~~~li~~y~~ 155 (480)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.025 Score=52.45 Aligned_cols=168 Identities=10% Similarity=0.086 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC---C-C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVE---P-N-EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p-d-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
|+.....|-..|++++|.+.|.+....-.+ + + ...|......+. ..+++.|... +...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~----------------~~~A 100 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIEC----------------YEKA 100 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHH----------------HHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHH----------------HHHH
Confidence 444556677778888888877766432110 0 0 011222222222 2244444333 3344
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcc
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRI----RLKPS--DITFIGLLSACAHA 222 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~ 222 (480)
+..|.+.|++..|-+++.. +...|... |++++|++.|++..+. | .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4567788888777666554 45566666 7888888888876542 2 111 23455666777888
Q ss_pred CCHHHHHHHHHHhhhhcCCcC----Ccc-HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 223 GLVNEGRRFFNTMKDEYAIEP----KVE-HYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p----~~~-~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
|++++|.++|+++....--.+ +.. .+-..+-.+...|++..|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888887764311111 111 2222333455567888888877775
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.011 Score=59.36 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+..|..+.-.....|++++|...++++++++| +..+|..+...|...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44555554444455666666666666666666 3456666666666666666666666665544
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0038 Score=59.86 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=80.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA 258 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 258 (480)
....+...|++++|+++|++..+... -+...|..+..++...|++++|...++.+.. +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 34566778999999999999988542 3566788888899999999999999999984 345 467788889999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhHHHHHHH
Q 038395 259 GQVEEAYKLVMDM-KIEPDSVLWGTLLG 285 (480)
Q Consensus 259 g~~~~A~~~~~~m-~~~p~~~~~~~li~ 285 (480)
|++++|...|++. .+.|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 55666444444443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.0073 Score=51.40 Aligned_cols=91 Identities=12% Similarity=0.018 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN--EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTA 148 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 148 (480)
....|..+...+...|++++|+..|++.......++ ...+..+...+.+.|+++.|...+....+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566777777777888888888777766432222 345666677777777888887777777753 2334555666
Q ss_pred HHHHHHhCCCHHHHH
Q 038395 149 LINMYSKCGSLKDAR 163 (480)
Q Consensus 149 li~~y~~~g~~~~A~ 163 (480)
+..+|...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666676666655444
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.35 E-value=0.0012 Score=45.86 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=49.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455678889999999999888 5556 477888888999999999999999999999998764
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0019 Score=55.31 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=64.8
Q ss_pred HHHHHhc--CCCChHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 038395 163 RLVFDRV--NDKDVVVWNSMIVGYAM-----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA------------- 222 (480)
Q Consensus 163 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 222 (480)
...|+.. ..+|..+|..+|..|.+ .|+.+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 34667777777777764 366777777788888888888888888888766542
Q ss_pred ---CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 223 ---GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 223 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
.+-+-|.+++++|. .+|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23355666666666 34666666666666666665544
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.34 E-value=0.14 Score=47.99 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
+.-+...|+...|.++-.+..-||..-|-..|.+|+..+++++-.++... +-+++.|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44445556666666666666666666666666666666666655443221 112355666666666666666666
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
.+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 5554421 13445566666666666554433
No 176
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0035 Score=60.47 Aligned_cols=120 Identities=10% Similarity=0.053 Sum_probs=86.2
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 211 (480)
+.+.+......+++......+++.+..++.+.... -..+..++|..|...|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44555666666777777777777788777766532 123445888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 258 (480)
|+.|+..+.+.|++..|.++...|..+ ....+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 888888888888888888888877754 4445555655555554444
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.31 E-value=0.014 Score=56.50 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=101.8
Q ss_pred HHHHHHH---cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 196 LFNEMCR---IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 196 l~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
++..|.+ .+.+.+......+++.+....+++++..++...+... ....-..+..++|..|.+.|..++++++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4454433 3456678888899999999999999999988887531 12222445569999999999999999999764
Q ss_pred ---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchhHHHHHHHHHHc
Q 038395 272 ---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANSGTYVLLSNIYAAI 324 (480)
Q Consensus 272 ---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 324 (480)
|+-||..+++.|+..+.+.|++..|.+++..|...+ .+++.++..-+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 899999999999999999999999999988877754 56777777666666665
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.26 E-value=0.025 Score=46.32 Aligned_cols=105 Identities=12% Similarity=0.018 Sum_probs=79.8
Q ss_pred HHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 038395 31 KLFATMP-QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN 106 (480)
Q Consensus 31 ~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 106 (480)
..+..+. +.+....-++...+...|++++|.++|+-+.. | +..-|-.|..++-..|++++|+..|....... +-|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd 102 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA 102 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 3344555 44445555566667788999999999888653 3 56678888888888899999999998888764 346
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
+..+-.+..++...|+.+.|++.|+..+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888889999888888888765
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00058 Score=47.86 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=40.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...|++++|...++++.+..|++...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888878888888888888888888888766544
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.23 E-value=0.011 Score=50.01 Aligned_cols=80 Identities=9% Similarity=-0.082 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP--NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
..|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 355666666666666666666666665542222 1235555566666666666666666666543 222233344444
Q ss_pred HHHH
Q 038395 151 NMYS 154 (480)
Q Consensus 151 ~~y~ 154 (480)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0015 Score=58.41 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=80.3
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChh
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~ 294 (480)
-..+.+++++|+..|...+ .+.|+ ...|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3667899999999999998 44655 666677788999999999998877665 66776 678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
+|.+.|++.++++|++......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999997443444
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0041 Score=55.79 Aligned_cols=97 Identities=14% Similarity=0.221 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCC
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 260 (480)
+-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|..+.|++-.+... .+.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34667889999999999998852 2356667777888999999999988777666 34565 6788889999999999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHH
Q 038395 261 VEEAYKLVMDM-KIEPDSVLWGT 282 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~~~~~~~ 282 (480)
+++|.+.|++. .+.|+-.+|..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 99999998887 77887666544
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.21 E-value=0.065 Score=48.28 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCH-H---HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEE--KDV-V---CWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
....+.+.|++++|.+.|+.+.. |+. . ..-.++.+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444556666666666666553 221 1 1123445556666666666666666554
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.038 Score=54.69 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 75 WNVMIDGYAQHGL--ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 75 ~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
++.-=.+|.+-.+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|-++|.+- |.. |-.+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~----G~e------nRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS----GHE------NRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc----Cch------hhHHHH
Confidence 4444455555443 34455557788888988987654 34466778888888888654 433 445667
Q ss_pred HHhCCCHHHHHHHHHhcCC--------------CChHHHHHHHHHHHhcCChHHHHHHHHH------HHHcCCCC---CH
Q 038395 153 YSKCGSLKDARLVFDRVND--------------KDVVVWNSMIVGYAMHGFGKDALQLFNE------MCRIRLKP---SD 209 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~p---~~ 209 (480)
|.....++.|.++...-.. +|+.--.+-...+...|+.++|..+.-+ +.+-+-+. +.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 7777777777776654321 1111112334455567777777765422 12222222 33
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDS 277 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 277 (480)
.+...+..-+-+...+..|-++|..|-.. ..++++....+++++|..+-++.| ..||+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 44555555555666777788888877632 457788888899999998888884 34443
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.0088 Score=49.72 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCC-cCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhH
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAI-EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP---DSVL 279 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 279 (480)
..|+..--..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++++ ...| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 455555556666777777777777777777663 33 344555556666666667777777777666 1111 1223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
--.+...+...|.+..|+..|+.++..-|... .-..-...+.++|+.+++..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 33455666677777777777777776555421 2222334556666666655544443
No 186
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.14 E-value=0.0012 Score=48.55 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 264 (480)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777776533 12344444467777777777777777776 2 11222 23333446667777777777
Q ss_pred HHHHHh
Q 038395 265 YKLVMD 270 (480)
Q Consensus 265 ~~~~~~ 270 (480)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0061 Score=56.87 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=91.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHh---hhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHh
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTM---KDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KI-EPDSV 278 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 278 (480)
.|..|-+.|.-.|+++.|...++.- .+++|-.. ....+..+..++.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566678899998776542 23444332 2456777888888899999998888764 21 22456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----C--CCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQ----N--LANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+..+|...|....+++.|+.++.+-+.+ + .....++.+|.++|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7778888998889999999888776552 1 2345688999999999999999988766554
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.13 E-value=0.077 Score=47.82 Aligned_cols=173 Identities=12% Similarity=0.074 Sum_probs=102.1
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC--CCh-H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 038395 149 LINMYSKCGSLKDARLVFDRVND--KDV-V---VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH- 221 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~--~~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 221 (480)
....+.+.|++++|.+.|+.+.. |+. . ..-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567788888877777754 221 1 1233556777788888888888888764322223334334433331
Q ss_pred -c---------------CC---HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH
Q 038395 222 -A---------------GL---VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGT 282 (480)
Q Consensus 222 -~---------------g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 282 (480)
. .+ ..+|...|+.+.+. -|+ ..-..+|...+..+...--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 12333444444433 233 3334444443333310000011 13
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+..-|.+.|.+..|..-++.+++.-|+. ..+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556888899999999999999987764 3466788999999999999998887664
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.07 Score=50.55 Aligned_cols=161 Identities=17% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDK-------DVVVWNSMIVGYAM---HGFGKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
...++-.|-...+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 335555688888889888888888763 11222233445556 78889999998886665566777777766
Q ss_pred HHHHHc---------cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH----HHHH---HhC----C---
Q 038395 216 LSACAH---------AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA----YKLV---MDM----K--- 272 (480)
Q Consensus 216 l~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m----~--- 272 (480)
...|-. ....++|...|.+.- .+.|+..+--.++..+...|...+. .++- ..+ +
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 655422 123555555555432 3445544433333333334432211 1111 110 1
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 273 ~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
-..+-..+.+++.++.-.|+.+.|.+..+++.+..|+
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 1123334455666666666666666666666665544
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0018 Score=46.04 Aligned_cols=57 Identities=5% Similarity=0.017 Sum_probs=45.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
..+...++++.|.++++++++.+|+++..+.....+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777888888888888888888888888888888888888888888888776543
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0039 Score=56.14 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=86.5
Q ss_pred cCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 242 EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH---GNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 242 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++... ....++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446889999999999999999999999887 3333 466676666665544 34578999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEKGVQKE 345 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 345 (480)
|...+...|++.+|...++.|.+..-..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999998765433
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.08 E-value=0.26 Score=46.14 Aligned_cols=282 Identities=18% Similarity=0.160 Sum_probs=173.2
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHH--HHHHH
Q 038395 43 SLTTMLTCY--AKQGEVAAARVLFDDME---EKDVVCWNVMIDGY--AQHGLANEALVLFRRMLAEKVEPNEV--TAVAV 113 (480)
Q Consensus 43 ~~~~li~~~--~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~l 113 (480)
.|.+|-.++ .-.|+-..|.+.-.+.. ..|....-.|+.+- .-.|+++.|.+-|+.|... |... -+..|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 345555554 33567777777665543 34555555555443 3458888888888888762 3222 23333
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChH--HHHHHHHHHHh
Q 038395 114 LSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-----KDVV--VWNSMIVGYAM 186 (480)
Q Consensus 114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~--~~~~li~~~~~ 186 (480)
.-..-+.|+.+.|+++-+..-.. -+.-.-.+.+.+...+..|+++.|+++.+.-.. +|+. .--.|+.+-+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33445678888888887777643 233345677788888888999999888876543 3332 12223332221
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHH
Q 038395 187 ---HGFGKDALQLFNEMCRIRLKPSDITF-IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262 (480)
Q Consensus 187 ---~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 262 (480)
..+...|...-.+..+ +.||.+.- .....++.+.|++.++-.+++.+-+. .|.+..+...+ +.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH
Confidence 2345566655554443 56665432 33456778889999999998888743 55555443332 34555532
Q ss_pred HHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-cCChhHHHHHHHH
Q 038395 263 EAYKLVMDM----KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA-IGNWDGVARVRTL 336 (480)
Q Consensus 263 ~A~~~~~~m----~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 336 (480)
. +=+++. .++| +..+--.+..+-...|++..|..-.+.+....|.. ..|..|.++-.. .|+-.++...+.+
T Consensus 312 ~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 L--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred H--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2 222221 2344 46677777788888899999988888888888765 477777777644 4888888877766
Q ss_pred HHh
Q 038395 337 MKE 339 (480)
Q Consensus 337 m~~ 339 (480)
-.+
T Consensus 389 av~ 391 (531)
T COG3898 389 AVK 391 (531)
T ss_pred Hhc
Confidence 554
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.033 Score=52.22 Aligned_cols=155 Identities=10% Similarity=0.040 Sum_probs=109.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhhhhcCCcCCccHHH---H------
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS--ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG---C------ 250 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~------ 250 (480)
..+.-.|+.++|...--...+.. +. ..+..+++ ++-..++.+.|...|++.. .+.|+-..-. .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 34556778887777665554432 11 12222222 2345577788888888766 3344422211 1
Q ss_pred ----HHHHHHHcCCHHHHHHHHHhC-C-----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 251 ----MVNLLSRAGQVEEAYKLVMDM-K-----IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 251 ----li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
=..-..+.|++.+|.+.+.+. . .+|++..|.....+..+.|+.++|+.--++++++++.-..+|..-.++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 122345789999999999887 3 445667788888888999999999999999999999888888889999
Q ss_pred HHHcCChhHHHHHHHHHHhCCC
Q 038395 321 YAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
+...++|++|.+-++...+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998876543
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.28 Score=49.31 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=96.0
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHH
Q 038395 55 GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 55 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
|++++|++++-.|.++|. -|..+.+.|++-...++++. -|-..| ...++.+...++....++.|.+++
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554443 23344444555444444321 111111 124444555555555555555554
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
.+-... ...+++|.+..++++-+.+-..+++ |....-.|..++.+.|.-++|.+.|-+-- .|
T Consensus 820 ~~~~~~----------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p--- 881 (1189)
T KOG2041|consen 820 SYCGDT----------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP--- 881 (1189)
T ss_pred Hhccch----------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc---
Confidence 433211 2334444444445544444444443 44455667788888888888887765431 22
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHH--------------HHHHHHHHHcCCHHHHHHHHHhC
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHY--------------GCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m 271 (480)
...+..|.+.+++.+|.++-+... -|.+.+. .--|..+.++|++-+|-+++.+|
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 135667888888888877655433 1222211 11245667778877777777777
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.4 Score=48.28 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=73.5
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--C---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 038395 23 GGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK--D---VVCWNVMIDGYAQHGLANEALVLFRR 97 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~ 97 (480)
-|++++|.+++-.|.++|. -|..+.+.|++-...++++.-..- | ..+|+.+...++....+++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678888888888887775 355666777777776666543221 1 22455555544444444444444432
Q ss_pred H-------------------H--HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 98 M-------------------L--AEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 98 m-------------------~--~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
- . ...++-|...+-.+...+.+.|.-++|.+.|-.. +.+ -+.+..+...
T Consensus 822 ~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 822 CGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR----SLP------KAAVHTCVEL 891 (1189)
T ss_pred ccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc----cCc------HHHHHHHHHH
Confidence 1 1 1123334445555566666666666665554322 221 2334455556
Q ss_pred CCHHHHHHHHHhcCCCCh
Q 038395 157 GSLKDARLVFDRVNDKDV 174 (480)
Q Consensus 157 g~~~~A~~~f~~m~~~~~ 174 (480)
+++.+|.++-+...-|.+
T Consensus 892 nQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHHHHhccchhH
Confidence 666666666655544433
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.18 Score=42.22 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
++..--.|..+....|+..+|...|++...--..-|......+.++....+++..|...++.+.+-..-.-++...-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33334445555566666666666666554433344555555555666666666666666655553211111123333445
Q ss_pred HHHHHcCCHHHHHHHHHhC
Q 038395 253 NLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m 271 (480)
..|...|+..+|+.-|+..
T Consensus 168 R~laa~g~~a~Aesafe~a 186 (251)
T COG4700 168 RTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHhcCCchhHHHHHHHH
Confidence 5555566666665555554
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.94 E-value=0.0025 Score=44.77 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCC
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHG-NIALGEKIAEYLISQNL 308 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~-~~~~a~~~~~~~~~~~~ 308 (480)
+..|..+...+.+.|++++|+..|++. ...| ++..|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777888888888888888777 4445 4677888888888888 68999999998888776
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.92 E-value=0.0018 Score=45.33 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 258 AGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444554444444 2222 34444444555555555555555555555555444
No 199
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.92 E-value=0.071 Score=53.66 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH
Q 038395 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLW 280 (480)
Q Consensus 208 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 280 (480)
+...|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 334555554444456777777777777663 3466666777777777777777777777665 444444443
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.19 Score=44.46 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCh-H-HHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-GQIGAL-E-SGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-~~~~~~-~-~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
..|+.-+..+++....++|..-+...-+.. .||-. |...=..+ .+.|.. . ..+.+|..+.+..|. -+++|
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqesL 142 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQESL 142 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHHH
Confidence 356666677777777777765554443321 11110 00000000 112221 1 223344454443122 25666
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC--CCh--------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVND--KDV--------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++.++...+.+......|.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 6666655555555555544332 222 234566666666778888888899888876666777788888888
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH-----HHHHcCCHHHHHHHHHhCCCC--CCHhHHHHHHHHHHhcCC
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN-----LLSRAGQVEEAYKLVMDMKIE--PDSVLWGTLLGACRLHGN 292 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~li~a~~~~~~ 292 (480)
.+.|+.+.|..+|+...+..+ ..+....+.++. .|.-++++.+|...+.++... .|+...|.=.-...-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 889999999999998776533 344444444432 344566777777777776321 234444443333445677
Q ss_pred hhHHHHHHHHHHHcCCCC
Q 038395 293 IALGEKIAEYLISQNLAN 310 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~ 310 (480)
...|.+..+.+.+..|..
T Consensus 302 l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHhccCCcc
Confidence 777888887777777754
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.012 Score=50.44 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=62.3
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 038395 61 RVLFDDM--EEKDVVCWNVMIDGYAQH-----GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI------------- 120 (480)
Q Consensus 61 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~------------- 120 (480)
...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 345666666666666543 45555555666777777777777777777765431
Q ss_pred ---CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 121 ---GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 121 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
.+-+-|..++++|... |+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 1335577777777777 777777777777777765543
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.012 Score=53.57 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLS 318 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 318 (480)
.|...+..+.+.|++++|...|+.. ...|+ ...+..+..++...|+++.|...|+.+++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555555667777777777766 32343 2355567777777888888888888888776654 33445566
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 038395 319 NIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+|...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888888888777654
No 203
>PRK15331 chaperone protein SicA; Provisional
Probab=96.86 E-value=0.011 Score=48.56 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=74.1
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
-+-..|++++|..+|+-+ -.. -|..-|..|...+...++++.|...+..+..++++++.++......|...|+.+.|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345789999999999887 222 356668888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 038395 332 RVRTLMKE 339 (480)
Q Consensus 332 ~~~~~m~~ 339 (480)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988766
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.79 E-value=0.0048 Score=50.88 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCccCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK-----EKGVQKEP 346 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 346 (480)
.....++..+...|+++.|....+.++..+|-+...|..++.+|...|+..+|.++|+.+. +.|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3456677788899999999999999999999999999999999999999999999999884 34776654
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.76 E-value=0.55 Score=44.93 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH-HHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLW-GTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~li~a~ 287 (480)
..|...+++..+..-++.|+.+|-+..+..-+.+++..+++++..++ .|+..-|..+|+-- ..-||...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45667778778888899999999999876336788999999998765 57788888888754 334565444 4556666
Q ss_pred HhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 288 RLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..-++-+.|..+|+..++.-.. -...|..++.--+.-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7778888899999866653222 235788888877888888777777666654
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.67 E-value=0.58 Score=43.96 Aligned_cols=265 Identities=17% Similarity=0.100 Sum_probs=173.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHH
Q 038395 57 VAAARVLFDDMEEKDVVCWNVMIDGYAQ--HGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC--GQIGALESGRWIHSY 132 (480)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~ 132 (480)
.-.+.+.|..-+. -.-|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..++.+- .-.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 4455556654332 2456777777665 47777887777665543 455667777777764 346999999999999
Q ss_pred HHHhCCCCCchh-HHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 038395 133 IENSRNIKVNVQ-VGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKP 207 (480)
Q Consensus 133 ~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 207 (480)
|... +.... -...|.-.--+.|+.+.|+..-+.... | -.-.|.+.+...+..|+++.|+++.+.-+... +.+
T Consensus 146 Ml~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred HhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 9852 22211 122333344567899988888777654 2 34578899999999999999999999876533 455
Q ss_pred CHHH--HHHHHHHHH---ccCCHHHHHHHHHHhhhhcCCcCCccHHH-HHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH
Q 038395 208 SDIT--FIGLLSACA---HAGLVNEGRRFFNTMKDEYAIEPKVEHYG-CMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLW 280 (480)
Q Consensus 208 ~~~t--~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 280 (480)
+..- -..|+.+-. -..+...|...-.+.. .+.|+..--. .-..+|.+.|++.++-.+++.+ +..|.+.+|
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 5432 223333322 1234666666554444 5577754432 3346889999999999999999 778888887
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHH
Q 038395 281 GTLLGACRLHGNIALG-EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
...+. .+.|+.... .+-.+++..+.|++......+..+-...|++..|..
T Consensus 300 ~lY~~--ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 300 LLYVR--ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHH--hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 65443 355553222 233445555788888888888888888888766553
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.64 E-value=0.051 Score=42.72 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=38.5
Q ss_pred HHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHcCC
Q 038395 255 LSRAGQVEEAYKLVMDM---KIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA---NSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 326 (480)
+-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..+++......|+ +......+..++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 33445555555555443 21111 223334445555555555555555555554444 33333344445555566
Q ss_pred hhHHHHHHH
Q 038395 327 WDGVARVRT 335 (480)
Q Consensus 327 ~~~a~~~~~ 335 (480)
.++|.+.+-
T Consensus 91 ~~eAl~~~l 99 (120)
T PF12688_consen 91 PKEALEWLL 99 (120)
T ss_pred HHHHHHHHH
Confidence 655555543
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.58 E-value=0.26 Score=38.76 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=80.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
..|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3566666677766665432 23334434433333333344444444444322221 345555555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 266 ~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..+-.++ .+.......+.+....|.-+.-.+++..+.+.+..++.....+.++|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555543 344556667788889999999999999988766677788899999999999999999999999999975
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.56 E-value=0.028 Score=44.66 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
..|+..+..+++.+++..|++..|.++.+...+.|+++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.53 E-value=0.003 Score=37.13 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
++++++++|+++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.52 E-value=0.013 Score=41.48 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=49.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 253 NLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
..|.+.+++++|.++++.+ ...| ++..|......+...|+++.|...++.+++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888899998888888 4445 466777788888899999999999999999998776443
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.45 E-value=0.0071 Score=38.02 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
.+|..+..++...|++++|+++++++++..|+++..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46778889999999999999999999999999988777665
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.44 E-value=0.2 Score=43.85 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHhcCCHHHHHHHHhhcCC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 51 YAKQGEVAAARVLFDDMEE--KD----VVCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|...|++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555442 11 12333444555555555555555555544
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.098 Score=47.61 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc----cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV----EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLW 280 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~ 280 (480)
..|...+....+.|++++|...|+.+.+.+ |+. ..+-.+...|...|++++|...|+.+ ...|+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555554456688888888888888653 443 35667778888888998888888887 22232 4455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
..+...+...|+.+.|...++.+++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5666777888999999999999999888764
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.019 Score=55.12 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDS----VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 319 (480)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 456677777777777777777777774 556653 34777777777777777777777777775321 1211111
Q ss_pred --HHHHcCChhHHHHHHHHHHhCCC
Q 038395 320 --IYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 320 --~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.+....+..+..++++.+.+-|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 11122333466666666666665
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.35 E-value=0.13 Score=42.30 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLKPSDIT 211 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 211 (480)
...++..+...|+++.|..+.+.+.. | |...|..+|.+|...|+..+|++.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44455556666666666666665543 2 455666666666666666666666665532 356665543
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.34 E-value=1.1 Score=43.16 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHhCCCCCC----HhHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 266 KLVMDMKIEPD----SVLWGTLLGA--CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 266 ~~~~~m~~~p~----~~~~~~li~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.++++.|+.|- ...-|.|..| +..+|++.++.-....+.+..| ++.+|..+.-......++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34445566553 3445555554 4678999999999999999999 7789999999999999999999999765
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.27 E-value=0.075 Score=42.22 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
...|+..++.+++.+++..+++..|.++.+...+..+++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888888887777677777777777776433
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=1.7 Score=44.35 Aligned_cols=303 Identities=12% Similarity=0.065 Sum_probs=159.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC---hhHHHHHHHHHHhcC---CHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcC
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQRS---LVSLTTMLTCYAKQG---EVAAARVLFDDMEE--KDVVCWNVMIDGYAQHG 86 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 86 (480)
.+++-+...+.+..|.++-..+..|- ...+.....-+.+.. +-+.+..+=+++.. ..-++|..+.+.--+.|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 34566677778888888877776654 333444444444442 23334444444444 35567888887777888
Q ss_pred ChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC----------CCCCchhHHHHHHH-
Q 038395 87 LANEALVLFRRMLAEKVE----PNEVTAVAVLSACGQIGALESGRWIHSYIENSR----------NIKVNVQVGTALIN- 151 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~----pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~li~- 151 (480)
+++-|..+++.=...+.. .+..-+...+.-+...|+.+...+++-.+.+.. ..+....+|.-++.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 888887776542221110 012234455666667777777666666555430 11111122221111
Q ss_pred --------HHHhCCCHHHHHHHH--HhcC-----CCChHHHHHHHHHHHhcCCh---H-------HHHHHHHHHHH-cCC
Q 038395 152 --------MYSKCGSLKDARLVF--DRVN-----DKDVVVWNSMIVGYAMHGFG---K-------DALQLFNEMCR-IRL 205 (480)
Q Consensus 152 --------~y~~~g~~~~A~~~f--~~m~-----~~~~~~~~~li~~~~~~g~~---~-------~A~~l~~~m~~-~g~ 205 (480)
.|-. ++-..+...| +... ..-........+.+++.... + +-+.+.+.+.. .|.
T Consensus 602 ~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~ 680 (829)
T KOG2280|consen 602 QDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG 680 (829)
T ss_pred hchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 1111111111 0000 00111112223333333221 1 11222222221 233
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 038395 206 KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLG 285 (480)
Q Consensus 206 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 285 (480)
.....|.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.+. .+.-|.-...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3334445555556667777778777665554 4777777777778888888888777777653 2455666777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 88888888888777654321 114566788888887777654
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.14 E-value=0.18 Score=44.08 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCch---hHHHHHHHHHHcCChhHHH
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~ 331 (480)
+..-|.+.|.+..|..-++.+++.-|+... +...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456688889999999999999998887543 4567888999999887544
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.93 E-value=0.063 Score=47.84 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=84.4
Q ss_pred HHHHHHHhcC--CCChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 038395 161 DARLVFDRVN--DKDVVVWNSMIVGYAMH-----GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG---------- 223 (480)
Q Consensus 161 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 223 (480)
-.++.|.... ++|..+|-+++..|... ++.+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888898888888654 567777778889999999999999999998775542
Q ss_pred ------CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 038395 224 ------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV-EEAYKLVMDM 271 (480)
Q Consensus 224 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 271 (480)
+-+-+..++++|. .+|+-||-++-..|++++++.+-. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345778899998 579999999999999999988764 3445554444
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.89 E-value=0.019 Score=41.33 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC---CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQ----NLA---NSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.+++.+...+...|++++|+..++++++. +++ ...++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666777777777777777766652 221 13456677777777777777777776653
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.81 E-value=0.02 Score=41.18 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-------K-IEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555555566655555555544 1 1122 45566677777777777777777777654
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=1.2 Score=39.31 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH----cCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLIS----QNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
-..|-.+....|+..|++.++.--+ .++.+..+...|+.+| ..|+.+++.++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444445566666666666444 2334445555566555 345656555443
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.73 E-value=1.8 Score=41.22 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---C----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 47 MLTCYAKQGEVAAARVLFDDMEEK---D----VVCWNVMIDGYAQ---HGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 47 li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
++-+|-...+++..+++.+.+... + ...--...-++-+ .|+.++|++++..+....-.+++.||..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466667777777777777653 1 1111123334445 67777777777775555556666777666665
Q ss_pred H
Q 038395 117 C 117 (480)
Q Consensus 117 ~ 117 (480)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 4
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.25 Score=44.78 Aligned_cols=110 Identities=10% Similarity=-0.024 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC--C-CHHHHHHHHHhcCCC---ChHHH
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC--G-SLKDARLVFDRVNDK---DVVVW 177 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g-~~~~A~~~f~~m~~~---~~~~~ 177 (480)
+-|...|-.|..+|...|+.+.|...|....+.. ++++..+..+..++... + ...++.++|+++... |+.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3466677777777777777777777777776642 33344444444433322 2 345677777776542 45566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.-|...+.+.|++.+|...|+.|.+. -|.......++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 66667777788888888888888774 333334444444
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=2.8 Score=42.20 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=52.8
Q ss_pred HHHHHHhCCCHHHHHHHH-------------HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 149 LINMYSKCGSLKDARLVF-------------DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f-------------~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
...++...|+.++|..+. .++...+..+...+..-+-+...+.-|-++|.+|-. ..++
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHH
Confidence 344555566666665443 233333445555555555566677788888888753 2356
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCc
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKV 245 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 245 (480)
+......+++++|..+-+... .+.||+
T Consensus 780 VqlHve~~~W~eAFalAe~hP---e~~~dV 806 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHP---EFKDDV 806 (1081)
T ss_pred hhheeecccchHhHhhhhhCc---cccccc
Confidence 777888899999988777655 335554
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.52 E-value=0.21 Score=39.16 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=66.4
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCc---hhHHHHHHHHHHcCCh
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN-LANS---GTYVLLSNIYAAIGNW 327 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~~ 327 (480)
+++..|+++.|++.|.+. .+-| +...||.-..++.-+|+.++|+.-+++++++. +... .+|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888888776 3333 57778888888888888888888888888854 3321 2566677778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 038395 328 DGVARVRTLMKEKGV 342 (480)
Q Consensus 328 ~~a~~~~~~m~~~~~ 342 (480)
+.|..-|+..-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888877764
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.47 E-value=0.83 Score=43.75 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHH-HHHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRN-IKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVW-NSMIV 182 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~ 182 (480)
...|...+++..+..-++.|+.+|....+. + ..+++.++++++..|+ .|+..-|.++|+--.. +|...| +-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345556666666666677777777777666 5 5566677777776655 4666666677654222 343332 33445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRLKPS--DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS 256 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 256 (480)
-+...++-+.|..+|+..... +..+ ...|..+|+-=+.-|++..+..+-+.+... -|...+.......|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHHh
Confidence 555666667777777644332 1112 345666676666777777776666666532 354444444444443
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.46 E-value=0.68 Score=49.61 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHH
Q 038395 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT--FIGLLSACAHAGLVN 226 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~ 226 (480)
..-+|.++|+.++|.+.+ ...|++.+|+.+-.+|... -|... -..|..-+...++.-
T Consensus 958 Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 344567777777775544 4467888888887776421 12221 245666667777777
Q ss_pred HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 227 EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+|-++......+ ..-.+..|+++..+++|.++....
T Consensus 1017 eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 777766655532 234566677777888887776655
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=3.7 Score=42.10 Aligned_cols=270 Identities=13% Similarity=0.054 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHhcCC---hHHHHHHHhhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CHHHHHH
Q 038395 11 YVSTSLVDLYARGGD---VLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGEVAAARVLFDDMEEK--------DVVCWNV 77 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~ 77 (480)
.+|.....-+.+..+ -+.+..+=+++.. ...++|..+..---.+|+.+-|..+++.=+.. +..-+..
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~ 551 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSL 551 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHH
Confidence 445555555555422 2233333334443 35577888888778888888888887654421 2223444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC----------CCC-CHHHHHHHHH---------HHHccCChHHHHHHHHHH--HH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEK----------VEP-NEVTAVAVLS---------ACGQIGALESGRWIHSYI--EN 135 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g----------~~p-d~~t~~~ll~---------~~~~~~~~~~a~~~~~~~--~~ 135 (480)
-+.-..+.|+.+-...++..+.+.- ..| ....|.-+++ .|-...+....-.++-+- ..
T Consensus 552 AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~ 631 (829)
T KOG2280|consen 552 ALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAA 631 (829)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhh
Confidence 5555566666666555554443310 111 1122222222 111122222222221111 00
Q ss_pred h--CCCCCchhHHHHHHHHHHhCCCHHHH----------HHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 136 S--RNIKVNVQVGTALINMYSKCGSLKDA----------RLVFDRVNDK-----DVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 136 ~--~~~~~~~~~~~~li~~y~~~g~~~~A----------~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
. .+..|+ .....+.+++.....-. .++++.+... .-.+.+--+.-+...|+..+|.++-+
T Consensus 632 ~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~ 708 (829)
T KOG2280|consen 632 ETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKS 708 (829)
T ss_pred hhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHH
Confidence 0 022332 23334444444332211 2222222211 11233444555666778888877766
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh
Q 038395 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSV 278 (480)
Q Consensus 199 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 278 (480)
+.+ -||...|..=+.+++..+++++-+++-...+ .+.-|.-.+.++.+.|+.+||.+++-+.+-.+
T Consensus 709 ~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--- 774 (829)
T KOG2280|consen 709 DFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--- 774 (829)
T ss_pred hcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH---
Confidence 653 5677777777778888888877666544433 14456667777888888888888887764222
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIA 300 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~ 300 (480)
-...+|...|++.+|.+..
T Consensus 775 ---ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 775 ---EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ---HHHHHHHHhccHHHHHHHH
Confidence 3456666777776666543
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.2 Score=47.18 Aligned_cols=64 Identities=8% Similarity=-0.078 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..++..|...+.+.+++..|++...+.++.+|+|..+..--..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456777788889999999999999999999999999999999999999999999999998765
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.18 E-value=0.14 Score=49.28 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCcc----HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE----HYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 208 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+...++.+..+|...|++++|...|+...+ +.|+.. .|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888888889999999999888773 367643 4788888889999999998888876
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.16 E-value=2.6 Score=38.89 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCCh---HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 109 TAVAVLSACGQIGAL---ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 109 t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
++..++.++...+.. +++..+++.+.+. .+..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 344445555544433 3344444445432 22223333334444444555666666665554
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=0.22 Score=44.52 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchhHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA---NSGTYVL 316 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 316 (480)
.|+.-++.| +.|++.+|..-|... ...||..-| |..++...|+++.|..+|..+.+..|+ -+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555543 455677777766655 123444444 677777777777777777777775554 3446666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|.....+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777888888877777654
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=1.5 Score=39.83 Aligned_cols=116 Identities=10% Similarity=0.025 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 038395 52 AKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW 128 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 128 (480)
...|++.+|..+|+.... .+...--.|+.+|...|+.+.|..++..+...--.........-+....+.....+..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445566666665555442 23334445555666666666666666555433111111222222333333333333333
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 129 IHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+.+..-+ .+-|...-..+...|.-.|+.+.|.+.+-.+.
T Consensus 225 l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 225 LQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333332 23345555555555555555555555554443
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.97 E-value=5.8 Score=42.98 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHG--LANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g--~~~~A~~~~~~m~~ 100 (480)
-.-.+|..|++.+ ..++|+....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3446778888887 66777777766664
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.92 E-value=2.3 Score=36.96 Aligned_cols=194 Identities=17% Similarity=0.137 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVN-----DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
..........+...+.+..+...+.... ......+..+...+...+....+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555556666666666666555543 12334455555555566666666666666655333321 11111122
Q ss_pred -HHHccCCHHHHHHHHHHhhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHh
Q 038395 218 -ACAHAGLVNEGRRFFNTMKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD--SVLWGTLLGACRL 289 (480)
Q Consensus 218 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~a~~~ 289 (480)
.+...|+.+.+...+..... ..| ....+......+...++.++|...+... ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56666777777777766642 122 1222333333355667777777777666 32333 4566666667777
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.++.+.+...+.......|.....+..+...+...|.++++...+....+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777764445555555555666677777776666543
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.88 E-value=1.2 Score=43.90 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=47.5
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 33445555555555544433 344555555555555655555555554321 3333334444555544444
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (480)
+.+..... | -++....++.-.|++++..+++.+-+
T Consensus 395 l~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44333321 1 13333444444555555555555443
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.81 E-value=0.3 Score=43.68 Aligned_cols=110 Identities=10% Similarity=0.102 Sum_probs=77.7
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 038395 60 ARVLFDDME--EKDVVCWNVMIDGYAQH-----GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----------- 121 (480)
Q Consensus 60 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----------- 121 (480)
.++.|.... ++|-.+|-+.+..+... +..+=....++.|.+-|+.-|..+|+.||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 57788888888777654 445555666778888899999999999998765432
Q ss_pred -----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC-HHHHHHHHHhcC
Q 038395 122 -----ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS-LKDARLVFDRVN 170 (480)
Q Consensus 122 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~ 170 (480)
+-+-+..++++|... |+-||..+-..|++++++.+- ..+..+..-.|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223477788888888 888888888888888887764 334444444444
No 241
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=3.9 Score=38.96 Aligned_cols=246 Identities=13% Similarity=-0.048 Sum_probs=136.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCHH--HHHHHHHHHHHcCChHHHH
Q 038395 19 LYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVV--CWNVMIDGYAQHGLANEAL 92 (480)
Q Consensus 19 ~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~--~~~~li~~~~~~g~~~~A~ 92 (480)
.+-+..++..|+..+....+ | ++.-|..-...+...|++++|.--.+.-.+ .|-. ...-.-.++...++..+|.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 33344455555555554332 2 344455556666677777776655543332 1111 1111222222222222222
Q ss_pred HHH---------------HHHHHCC-CCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH--HHH
Q 038395 93 VLF---------------RRMLAEK-VEPNEVTAVAVLS-ACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI--NMY 153 (480)
Q Consensus 93 ~~~---------------~~m~~~g-~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~y 153 (480)
+.| +...... -+|.-.++..+-. ++...++.++|.++--.+.+. -..+ .+..++ .++
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n--~~al~vrg~~~ 213 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN--AEALYVRGLCL 213 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch--hHHHHhccccc
Confidence 222 2221111 1233445544433 346678889998887777764 1112 222222 234
Q ss_pred HhCCCHHHHHHHHHhcCCCChH---------------HHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVNDKDVV---------------VWNSMIVGYAMHGFGKDALQLFNEMCRI---RLKPSDITFIGL 215 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~l 215 (480)
.-.++.+.|...|++...-|.. .|..=.+-..++|++.+|.+.|.+.+.. +++|+...|...
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 4567889999999887753222 2333344556889999999999998763 355666677777
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
..+..+.|+.++|..--+... .+.|. +..|..-..++.-.+++++|.+-++..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999988777665 23332 222222234455567889998888776
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.69 E-value=1.3 Score=43.81 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 123 (480)
.+.++.-+-+.|-.+.|+++-+.- ..-.....+.|+.+.|.++-++ .++...|..|...+.+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCH
Confidence 555555555555555555543221 1112223344555555444221 22444555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
+.|++.+..... +..|+-.|.-.|+.+.-.++-+....+. -+|....++...|+.++..+++.
T Consensus 364 ~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 364 ELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555544332 3444444555555544444443333221 12233333334455555554444
No 243
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.67 E-value=1.9 Score=34.91 Aligned_cols=41 Identities=24% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
++..+...+.......+++.+.+. + ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHH
Confidence 344444444444444444444443 2 2334444444444443
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.66 E-value=0.51 Score=38.06 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=34.7
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 256 SRAGQVEEAYKLVMDM----KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.+.|++++|.+.|+.+ |..| ....--.|+.++.+.+++++|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 4566666666666666 2222 233444566777777777777777777777777543
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.84 Score=43.20 Aligned_cols=95 Identities=11% Similarity=0.004 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..++.|.-.|.+.+++.+|++.-+.. .. ++|+...--=..+|...|+++.|...|+++++..|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778889999999999887776 33 34676666677899999999999999999999999998777888877777
Q ss_pred cCChhH-HHHHHHHHHhC
Q 038395 324 IGNWDG-VARVRTLMKEK 340 (480)
Q Consensus 324 ~g~~~~-a~~~~~~m~~~ 340 (480)
..+..+ ..++|..|..+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666654 47888888654
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=3.6 Score=37.48 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=89.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCC
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 260 (480)
......|+..+|..+|......... +...-..+..++...|+++.|..++..+-.+. .-+ .....+-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHHHHhc
Confidence 3455678888888888877764322 23455567777888888888888888765321 111 1112233455556555
Q ss_pred HHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCChh
Q 038395 261 VEEAYKLVMDMKIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN--LANSGTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 261 ~~~A~~~~~~m~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 328 (480)
..+..++-.+.--.| |...--.+...+...|+.+.|.+.+-.+++.+ -.+...-..|+..+.-.|.-+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 555555555553345 45555667777777888888877766666643 345566667777777766443
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.17 E-value=2.5 Score=34.22 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA 258 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 258 (480)
.+|..+.+.+.......+++.+...+. .+....+.++..|++.+ .++...++.. .++......++..+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHHc
Confidence 344444444555555555555544432 33444445555554332 2222222221 11222233344445555
Q ss_pred CCHHHHHHHHHhCC
Q 038395 259 GQVEEAYKLVMDMK 272 (480)
Q Consensus 259 g~~~~A~~~~~~m~ 272 (480)
+.++++.-++.+++
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 55555555555543
No 248
>PRK09687 putative lyase; Provisional
Probab=94.12 E-value=4.8 Score=37.17 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=159.3
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHCCCCCC
Q 038395 31 KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA----NEALVLFRRMLAEKVEPN 106 (480)
Q Consensus 31 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd 106 (480)
.++..+..+|.......+.++.+.|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .||
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 3444556778888888888888888755544444545567777777788888888874 4678888777443 567
Q ss_pred HHHHHHHHHHHHccCCh-----HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHH
Q 038395 107 EVTAVAVLSACGQIGAL-----ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 181 (480)
...-...+.+++..+.. ..+...+.... ..++..+-...+.++++.|+.+....+...+.++|...-..-+
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~----~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITA----FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHh----hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 77777777777665432 22333333332 3346677778888888888865555555555566666666666
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 182 VGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 182 ~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
.++.+.+ +..++...+..+.. .+|...-...+.++.+.++. .+...+-...+. ++ .....+.+++..|.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCC
Confidence 6666653 24567777777764 45777777888889888885 455555544432 22 34567888999999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHH
Q 038395 261 VEEAYKLVMDM-KIEPDSVLWGTLLGACR 288 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~~~~~~~li~a~~ 288 (480)
. +|...+..+ .-.||..+-...+.+|.
T Consensus 251 ~-~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 K-TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred H-hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 6 677777777 44678777777776664
No 249
>PRK09687 putative lyase; Provisional
Probab=94.10 E-value=4.8 Score=37.15 Aligned_cols=241 Identities=12% Similarity=-0.000 Sum_probs=151.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHh
Q 038395 61 RVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL----ESGRWIHSYIENS 136 (480)
Q Consensus 61 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~ 136 (480)
..+++.+..+|....-..+.++...|. +++...+..+.. .+|...-...+.++++.|+. +.+...+..+..
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~- 100 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL- 100 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh-
Confidence 345555567788777778888877775 445555555544 34666666777778888763 456666666532
Q ss_pred CCCCCchhHHHHHHHHHHhCCC-----HHHHHHHHHh-cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 137 RNIKVNVQVGTALINMYSKCGS-----LKDARLVFDR-VNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 137 ~~~~~~~~~~~~li~~y~~~g~-----~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
-.++..+-...+.+++..+. ...+...+.. +.+++..+-...+.++.+.|+ .+|+..+-.+.. .+|..
T Consensus 101 --~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~ 174 (280)
T PRK09687 101 --EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGD 174 (280)
T ss_pred --cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHH
Confidence 24666677677777766543 1234444433 345566666677788888776 467777777765 34555
Q ss_pred HHHHHHHHHHccC-CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 038395 211 TFIGLLSACAHAG-LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289 (480)
Q Consensus 211 t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~ 289 (480)
.-...+.++.+.+ ..+.+...+..+.. .++..+-...+.++++.|+..-.-.+++.+. .++ .....+.++..
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ 247 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHh
Confidence 5555566666653 24466666666663 4677778888899999998544444444444 233 34467788888
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
.|+. +|...+..+.+..|+. ..-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~~d~-~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKFDDN-EIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhCCCh-hHHHHHHHHH
Confidence 8885 6888888888877743 3433334333
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.00 E-value=1.3 Score=42.97 Aligned_cols=117 Identities=10% Similarity=0.060 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 038395 224 LVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSR---------AGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHG 291 (480)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~ 291 (480)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 345667777776643345555 3334333332221 22344556666555 3333 5666666666677777
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+++.|...|+++..++|+.+.+|........-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7888888888888888888888888888888888888888888775443
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.77 E-value=5.4 Score=39.92 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCcCCcc
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD-----ITFIGLLSACAH----AGLVNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
...+++...=.|+-+.+++++.+-.+.+ +.-.. .+|..++..++. ....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445566666789999999888866532 32211 123333333332 46788899999999965 47766
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHhCC-CC-----CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH-HHH
Q 038395 247 HYGCM-VNLLSRAGQVEEAYKLVMDMK-IE-----PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV-LLS 318 (480)
Q Consensus 247 ~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~ 318 (480)
.|... ...+...|++++|.+.|++.- .+ .....+--+.-.+....++++|...+..+.+...-....|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 65444 356677899999999999761 11 12333445666778889999999999999997665444554 455
Q ss_pred HHHHHcCCh-------hHHHHHHHHHHhC
Q 038395 319 NIYAAIGNW-------DGVARVRTLMKEK 340 (480)
Q Consensus 319 ~~~~~~g~~-------~~a~~~~~~m~~~ 340 (480)
.+|...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 566778888 8888888877543
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.50 E-value=4.6 Score=34.96 Aligned_cols=201 Identities=13% Similarity=0.044 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--C-hHHHHHHHH-
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--D-VVVWNSMIV- 182 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~-~~~~~~li~- 182 (480)
...+......+...+.+..+...+...............+..+...+...+++..+.+.+...... + .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444555555555555555555544431012333444555555555666666666666655541 1 122222223
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcC
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRL--KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAG 259 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 259 (480)
.+...|+.+.|...|.+...... ......+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 67778888888888887744211 112333444444466778888888888887742 122 3566777777888888
Q ss_pred CHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 260 QVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 260 ~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888777 44444 444555555555667788888888888887776
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.46 E-value=0.78 Score=36.11 Aligned_cols=102 Identities=18% Similarity=0.054 Sum_probs=65.0
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHhcC
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD--SVLWGTLLGACRLHG 291 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~li~a~~~~~ 291 (480)
+.+..|+++.|++.|.+... -.+-....||.-..+|.-.|+.++|++=+++. +-+.. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45667888888888877763 22334677888888888888888887777665 21111 122333334577788
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
+.+.|..-|+.+-+++.+-..-....++=|
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQLVELNPY 159 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHHHhcChH
Confidence 888888888888887765443333344434
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=2.4 Score=39.16 Aligned_cols=48 Identities=8% Similarity=-0.057 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 3444444444444432 23333444444444444444444444444444
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.36 E-value=0.18 Score=29.23 Aligned_cols=32 Identities=9% Similarity=-0.063 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777888888888888888888887775
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.34 E-value=1.7 Score=40.47 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=62.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCC--c--CCccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-----Hh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAI--E--PKVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD-----SV 278 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~--~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-----~~ 278 (480)
+-.++...+.++++++.|+...+-..- . ....+|..|...|++..++++|.-+..+. ++.-- ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444555556666666666655421110 1 12345666666777776666655443332 22110 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCc----hhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQN--LANS----GTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
+...|.-+++..|.+..|.+.-++..++. ..|. .....+.++|...|+.+.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22234456666677666666666665532 1222 2234566677777776666555543
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.19 E-value=9.1 Score=38.32 Aligned_cols=175 Identities=16% Similarity=0.156 Sum_probs=113.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchh-----HHHHHHHHHHh----CCCHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-----VGTALINMYSK----CGSLKDA 162 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~y~~----~g~~~~A 162 (480)
.-+|.-+... +||. +..+++..+=.||-+.|.+.+....+..++..... .|...+..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555554 4543 44566666677888888888888776533333221 23333333332 4578889
Q ss_pred HHHHHhcCC--CChHHHHHHH-HHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 163 RLVFDRVND--KDVVVWNSMI-VGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 163 ~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.++++.+.+ |+...|.-.- ..+...|+.++|++.|++..... .+.....+--+.-.+.-..++++|...|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 999998887 7777765543 45566899999999999765311 12234455566667888899999999999998
Q ss_pred hhcCCcCCccHHHHHHHHHHHcCCH-------HHHHHHHHhC
Q 038395 237 DEYAIEPKVEHYGCMVNLLSRAGQV-------EEAYKLVMDM 271 (480)
Q Consensus 237 ~~~~~~p~~~~~~~li~~~~~~g~~-------~~A~~~~~~m 271 (480)
+...+.+...+|.. ...+...|+. ++|.++|.+.
T Consensus 333 ~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 76555544444432 2334556666 8889998887
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=93.14 E-value=1.7 Score=36.03 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=39.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 161 (480)
+-+.|++++|..+|+-+.-.+ .-|..-+..|..++-..+++++|...|...... + ..|+...--....|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555554422 112333334444444455555555555554433 1 1222233334445555555555
Q ss_pred HHHHHHhcC
Q 038395 162 ARLVFDRVN 170 (480)
Q Consensus 162 A~~~f~~m~ 170 (480)
|+..|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
No 259
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.07 E-value=2.9 Score=39.79 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhh---hcC-CcCCcc
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEM----CRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKD---EYA-IEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~-~~p~~~ 246 (480)
.|..|.+.|.-.|+++.|+..-+.- ++-|-+. ....+..+.+++.-.|+++.|.+.|..... +.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4666666666778888888765432 2223211 224566777788888899999888775431 111 122234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-------K-IEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..-+|...|.-...+++|+.++.+- + .--....+.+|..++...|..+.|....+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777888888877653 1 112456778899999999999998888777666
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.03 E-value=0.31 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..|..+...+...|++++|.+.+++++++.|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777788888888888777777753
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.02 E-value=4.1 Score=32.96 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=27.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 184 YAMHGFGKDALQLFNEMCRIRL--KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
..+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++..+-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666666665554311 111233444555555666666666655555543
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.89 E-value=3.9 Score=32.42 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
||++......+-.+. .+....+.-+..+...|+-++-.++++++.. +-.|++.....+..||.+.|+..++.+++..+
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444443333322 2333445567777888888888888888765 34677788888888999999999998888888
Q ss_pred hhhcCC
Q 038395 236 KDEYAI 241 (480)
Q Consensus 236 ~~~~~~ 241 (480)
.+. |+
T Consensus 147 Cek-G~ 151 (161)
T PF09205_consen 147 CEK-GL 151 (161)
T ss_dssp HHT-T-
T ss_pred HHh-ch
Confidence 754 54
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.88 E-value=0.66 Score=42.22 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.++..++.++...|+.+.+...+++++..+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34566777888888899999999999999998888999999999999999999999888865
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=92.83 E-value=6.7 Score=38.31 Aligned_cols=157 Identities=10% Similarity=0.020 Sum_probs=103.5
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------ccCCHHHHHHHHHHhh
Q 038395 175 VVW--NSMIVGYAMHG-----FGKDALQLFNEMCR-IRLKPSDI-TFIGLLSACA---------HAGLVNEGRRFFNTMK 236 (480)
Q Consensus 175 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 236 (480)
..| ..++.+....- ..+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 35688889999872 23566643 3333322221 1234455666666655
Q ss_pred hhcCCc-CCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 237 DEYAIE-PKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 237 ~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
+ +. -|......+..++.-.|+++.|..+|++. .+.|| ..+|....-.+.-.|+.++|.+.+++.+++.|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 23 34666666777778888899999999998 66777 5667666677788999999999999999999975433
Q ss_pred --HHHHHHHHHHcCChhHHHHHHH
Q 038395 314 --YVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 314 --~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
....++.|... ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 33344466655 4567776653
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.51 E-value=1.1 Score=40.82 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 038395 144 QVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCR-----IRLKPSDITFIGL 215 (480)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 215 (480)
.++..++..+..+|+.+.+.+.++++... |...|..++.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 36788899999999999999999888753 778999999999999999999999998765 5788877766655
Q ss_pred HHH
Q 038395 216 LSA 218 (480)
Q Consensus 216 l~a 218 (480)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=27 Score=41.17 Aligned_cols=308 Identities=12% Similarity=0.092 Sum_probs=172.1
Q ss_pred HHHHHHhcCChHHHHHHHhhC----CCCCh--hHHHHHHHHHHhcCCHHHHHHHHh-hcCCCCHHHHHHHHHHHHHcCCh
Q 038395 16 LVDLYARGGDVLSAEKLFATM----PQRSL--VSLTTMLTCYAKQGEVAAARVLFD-DMEEKDVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m----~~~~~--~~~~~li~~~~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~~ 88 (480)
|..+-.+|+.+..|...+++- .+.+. .-+-.+...|+.-+++|...-+.. +..+|+. ..-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence 344556788888888888883 22222 224444447888888877777666 3444433 2345556778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH-HHHHHhCCCHHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL-INMYSKCGSLKDARLVFD 167 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~y~~~g~~~~A~~~f~ 167 (480)
+.|...|+++.+.+ ++...+++.++......+.++...-..+.... ...+...-++++ +.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999998863 33366788888877777887777665554443 223333333332 334456677777666655
Q ss_pred hcCCCChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH----------H
Q 038395 168 RVNDKDVVVWNSM--IVGYAMHG--FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF----------N 233 (480)
Q Consensus 168 ~m~~~~~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~ 233 (480)
.++...|.+. ...+.+.. +.-.-.++.+.+++.-+.| +.+|+..|.+..+.++. +
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566666654 22222222 2222223444443321111 11222222111111111 1
Q ss_pred HhhhhcCCcCCcc------HHHHHH---HHHHHcCCHHHHH-HHHHhCCCCC-----CHhHHHHHHHHHHhcCChhHHHH
Q 038395 234 TMKDEYAIEPKVE------HYGCMV---NLLSRAGQVEEAY-KLVMDMKIEP-----DSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 234 ~m~~~~~~~p~~~------~~~~li---~~~~~~g~~~~A~-~~~~~m~~~p-----~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
......+..++.. .|..-+ +.+.+....--|. +.+.....+| -..+|-...+.++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111112233221 122222 2222211111111 1111111122 25689999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
..-.+.+..++ ..+.-.+......|+-..|..++++-.+...
T Consensus 1692 all~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88888877743 5788888999999999999999999887654
No 267
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=17 Score=37.83 Aligned_cols=150 Identities=12% Similarity=0.057 Sum_probs=94.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMPQ--R---SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
++-+.+.+.+++|+.+-+.-.. + -...+...|..+.-.|++++|-...-.|...+..-|---+..++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3445667788899888877653 1 2356888999999999999999998888888888888888877777766544
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH------------------HHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRW------------------IHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~------------------~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
..+. .....+.+...|..+|-.+.. .+...-.+ +..+..+ ...+..+-..|+..|
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q---~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ---NSESTALLEVLAHLY 515 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh---hccchhHHHHHHHHH
Confidence 3321 111111234445555555444 11111111 1111111 112233445588999
Q ss_pred HhCCCHHHHHHHHHhcCCCC
Q 038395 154 SKCGSLKDARLVFDRVNDKD 173 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~ 173 (480)
...+++++|...+-...+++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHccChHHHHHHHHhccChH
Confidence 99999999999988887653
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=2.6 Score=35.11 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=58.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchh-HHHHH--HHHHHhCCC
Q 038395 83 AQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ-VGTAL--INMYSKCGS 158 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--i~~y~~~g~ 158 (480)
++.+..++|+.-|.++.+.|...=+. .........++.|+...|...|+++-+. .-.|-.. -..-| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45555666666666666554332111 1111222344556666666666666543 2112111 00011 112345566
Q ss_pred HHHHHHHHHhcCCC-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038395 159 LKDARLVFDRVNDK-D---VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP 207 (480)
Q Consensus 159 ~~~A~~~f~~m~~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 207 (480)
+++...-.+-+..+ + ...-.+|.-+-.+.|++.+|...|..+......|
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 66666555555432 1 1233345455556667777777776665543344
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.09 E-value=7.6 Score=36.10 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----ChHHHHHHHHHHHHh
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQ--IG----ALESGRWIHSYIENS 136 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 136 (480)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 4556678888888888888777664444333 11 235567777777765
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.96 E-value=6.2 Score=32.59 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCcc-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVE-HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~ 295 (480)
.-...++.+++..++..+. -+.|... .-..-...+.+.|++.+|.++|+++ .-.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3345667788888777776 3455532 2222334456788888888888887 223444444556655555444333
Q ss_pred HHHHHHHHHHcCC
Q 038395 296 GEKIAEYLISQNL 308 (480)
Q Consensus 296 a~~~~~~~~~~~~ 308 (480)
=....+++.+.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3444555555554
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.74 E-value=6.1 Score=38.80 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=79.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
+..++..-+++-++..+ +.||-.+.-.++ +--....+.++.+++++..+. | ...+..-- .....|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccc---hh
Confidence 44455555555555544 456554433333 223345577888888776642 1 00000000 0000111 11
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 266 ~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
+.+..-..+|-..+=..|...+.+.|+.++|.+.++++.+..|. +......|++.+...+.+.++..++.+-.+-..+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222333345667777888888888888888876664 4456778888888888888888888876554444
Q ss_pred cCC
Q 038395 344 KEP 346 (480)
Q Consensus 344 ~~~ 346 (480)
+..
T Consensus 328 kSA 330 (539)
T PF04184_consen 328 KSA 330 (539)
T ss_pred chH
Confidence 433
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.63 E-value=0.46 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRML 99 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~ 99 (480)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777777777777777744
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.34 E-value=16 Score=36.05 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=64.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HhHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK-I-EPD--SVLWGTLLGA 286 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~li~a 286 (480)
+=..+..++-+.|+.++|.+.+.+|.++............|+..|...+.+.++..++.+.. + -|. ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33446666778899999999999888654322234466778888888999999988888773 1 233 3445554433
Q ss_pred HHhcCCh---------------hHHHHHHHHHHHcCCCCc
Q 038395 287 CRLHGNI---------------ALGEKIAEYLISQNLANS 311 (480)
Q Consensus 287 ~~~~~~~---------------~~a~~~~~~~~~~~~~~~ 311 (480)
.+..++. ..|.++..++.+.+|.-+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3333321 235567777777776543
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.03 E-value=7.5 Score=36.49 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHccCCHHHHHHHHHHhhh---hcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 218 ACAHAGLVNEGRRFFNTMKD---EYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++...|.+-.|.+.-++..+ .+|-.|. ....-++.+.|...|+.+.|+.-|+.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 44445555555444444332 1121111 22334555666666666666555544
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.97 E-value=15 Score=35.03 Aligned_cols=150 Identities=9% Similarity=-0.085 Sum_probs=76.8
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhhh-cCCcCCccH
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP---SDITFIGLLSACAHAGLVNEGRRFFNTMKDE-YAIEPKVEH 247 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 247 (480)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 355678888888888999999988888887643211 2233333344556678888888888777651 111111111
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHhHHHHHHHHHHh------cCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 248 YGCMVNLLSRAGQVEEAYKL-VMDMKIEPDSVLWGTLLGACRL------HGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~a~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
...+...+.. ..+..... ........-...+..+..-+.. .++.+.+...+..+.+..|....+|..+...
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001222222222223 3677888888888888888776676666655
Q ss_pred HHH
Q 038395 321 YAA 323 (480)
Q Consensus 321 ~~~ 323 (480)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 533
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.80 E-value=7.6 Score=35.00 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=60.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCC-cCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAI-EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD-SVLWGTLL 284 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~li 284 (480)
.|+.-+.. ...|++..|.+-|....+.|.- .-....+-.|...+...|++++|..+|..+ |-.|- +...--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3456677777777776654311 011233445667777777777777776665 32332 35555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
......|+.+.|...++++.+.-|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6677777777777777777777776543
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.61 E-value=1.1 Score=27.81 Aligned_cols=28 Identities=36% Similarity=0.570 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
+|..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777777777777777777777774
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=3.3 Score=38.30 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=89.0
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHH----HHHHHHHHhcCChh
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLW----GTLLGACRLHGNIA 294 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~li~a~~~~~~~~ 294 (480)
..|...+|-..++++.+++ +.|...+.-.=+++.-.|+.+.-...++++ +. .||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4577888888888888653 566777777778899999999888888888 43 5665333 23344556789999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
+|++..++..++++.+.-+..++...+--.|+..++.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999998877788888888888888888776543
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.32 E-value=15 Score=34.12 Aligned_cols=135 Identities=10% Similarity=0.184 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--c----CCHHHHHHHHHHhhhhcCC--cCCccHHHHHHHHHHHcCCH
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAH--A----GLVNEGRRFFNTMKDEYAI--EPKVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~ 261 (480)
.++.+.+++.|.+.|++-+..+|.+....... . ....+|..+|+.|++.+.+ .++...+..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788899999998888887764433332 2 2356788999999987665 3344555555443 33333
Q ss_pred H----HHHHHHHhC---CCCC-C-HhHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 262 E----EAYKLVMDM---KIEP-D-SVLWGTLLGACRLHGN--IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 262 ~----~A~~~~~~m---~~~p-~-~~~~~~li~a~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
+ .+..+|+.+ ++.+ | ......++..+-...+ +..+..+++.+.+.+..-...+...+...+-.++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 3 333444443 4333 2 2333333333322222 3356666666666554432333333334443333
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.09 E-value=0.75 Score=27.16 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.03 E-value=5.6 Score=33.82 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE--VTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
..+..+...|.+.|+.++|++.|.++++....|.. ..+..++..+.-.+++..+......+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888888888888888888888776444433 35667777788888888888777776654
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.93 E-value=1.6 Score=37.23 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=67.7
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEP------DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
-+.+.|++++|..-|... ..-| ....|..-..++.+.+..+.|..-..++++++|....+..--+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677888887777665 1112 234555556778888999999999999999999877777777889999999
Q ss_pred hhHHHHHHHHHHhCC
Q 038395 327 WDGVARVRTLMKEKG 341 (480)
Q Consensus 327 ~~~a~~~~~~m~~~~ 341 (480)
+++|+.-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887764
No 283
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.69 E-value=2.7 Score=31.51 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 335666677777778899999999999999999999999999999986544 33447777765
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.66 E-value=15 Score=32.95 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCch---hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+..-|.+.|.+..|..-++++++.-|+... .+..+..+|...|-.++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3556788999999999999999997665443 5567888999999999998887666543
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.55 E-value=15 Score=32.89 Aligned_cols=165 Identities=14% Similarity=0.097 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH--HHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVNDK------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR-LKPSD--ITFI 213 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~ 213 (480)
...|+.-+ .-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....- -.||. ..|.
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444433 445679999999999999763 23455566778889999999999999987743 33332 3444
Q ss_pred HHHHHHHcc----CCHHH---HHHHHHHhhhhcCCcCCcc------H------------HHHHHHHHHHcCCHHHHHHHH
Q 038395 214 GLLSACAHA----GLVNE---GRRFFNTMKDEYAIEPKVE------H------------YGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 214 ~ll~a~~~~----g~~~~---a~~~~~~m~~~~~~~p~~~------~------------~~~li~~~~~~g~~~~A~~~~ 268 (480)
..++-+... .+... |..-|+.+..+ -||.. . =..+..-|.+.|.+..|..-+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444433222 23333 44445555544 34432 1 122345677888888888888
Q ss_pred HhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 269 MDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 269 ~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
++| .--|+ ....-.+..+|...|-.++|....+-+...-|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 877 11222 34555677889999999999888776666666553
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.48 E-value=25 Score=35.40 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=126.1
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL--KPSDITFIGLL 216 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll 216 (480)
+..+|...++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++....+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5667888888899999999999999998765 224565566555566988888888776655332 33333333333
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCc-cHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHhHHHHHHH-----H
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKV-EHYGCMVNLLSRAGQVEEAY---KLVMDM-KIEPDSVLWGTLLG-----A 286 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~-----a 286 (480)
+-..|+.+.|..+++.+..++ |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.- -
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 456789999999999999753 653 33333455667888888888 555444 22233333333332 2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 34568899999999999999999998999999888777643
No 287
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.47 E-value=23 Score=34.92 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCCHHHHH-HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHhH
Q 038395 206 KPSDITFI-GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL---SRAGQVEEAYKLVMDM--KIEPDSVL 279 (480)
Q Consensus 206 ~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~~ 279 (480)
.|+..|+. .++.-+-..|-..+|...+..+.. -.+|+...|..+|+.= ..+| +..+..+++.| .+..|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 34444432 344444455555555555555542 2233444444444321 1222 44455555554 11145555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
|...+.--..+|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 55555544555555555554444443
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=4.6 Score=40.39 Aligned_cols=96 Identities=19% Similarity=0.079 Sum_probs=49.4
Q ss_pred hcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 22 RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
-.|+++.|-.++-.++++ .-+.++..+.+.|-.++|+++-- .||.. .....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~---D~d~r-----Felal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST---DPDQR-----FELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC---Chhhh-----hhhhhhcCcHHHHHHHHHhh---
Confidence 356777777776666632 33455566666666666655421 11111 11223455555555554332
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (480)
-+..-|..|..+..+.+++..|.+.+....
T Consensus 664 ---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 664 ---NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred ---cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 133445555565556666666555555443
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.08 E-value=27 Score=35.20 Aligned_cols=300 Identities=12% Similarity=0.102 Sum_probs=183.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVV-CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
+...|+.+|.---...+++.+..+++.+.. |-.. -|-.....=.+.|..+.+.++|++-++. ++.....|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 456788888766555666777778877764 5443 4666666667889999999999998874 66677777766665
Q ss_pred H-HccCChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHh---c----
Q 038395 117 C-GQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM---H---- 187 (480)
Q Consensus 117 ~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~---~---- 187 (480)
+ ...|+.+..+..|+......|..- +...|...+..-..++++.....+|+++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 4 455678888888988887544432 455677777777888999999999999887555555555444433 2
Q ss_pred --CChHHHHHHHHHHHHc---C-CCCCHHHHHHHHHHHH-ccCCHHH------------------------HHHHHHHhh
Q 038395 188 --GFGKDALQLFNEMCRI---R-LKPSDITFIGLLSACA-HAGLVNE------------------------GRRFFNTMK 236 (480)
Q Consensus 188 --g~~~~A~~l~~~m~~~---g-~~p~~~t~~~ll~a~~-~~g~~~~------------------------a~~~~~~m~ 236 (480)
-..+++.++-...... + ..+.......-+.-.. ..+..++ ....|+.-.
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2344555544443321 0 0111111111111110 0011111 111122211
Q ss_pred hhc--CCc----CCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 038395 237 DEY--AIE----PKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQN- 307 (480)
Q Consensus 237 ~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~- 307 (480)
+.. .++ ++..+|...++--.+.|+.+.+.-+|++. +...=...|--.+.-....|+.+.|..+.....+..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 110 112 23556777777778889999988888887 333234556555555555588888888877777744
Q ss_pred CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 308 LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|..+.+...-....-..|+++.|..+++.+.+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 444444444444556677888888888888654
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.83 E-value=13 Score=31.17 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=61.6
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HHccCCh
Q 038395 52 AKQGEVAAARVLFDDMEEKDVVCWNVM-----IDGYAQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSA--CGQIGAL 123 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~--~~~~~~~ 123 (480)
.+.+..++|+.-|..+.+-+--+|-.| ....++.|+...|...|.+.-...-.|-.. -..-|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 445555666666666554333333222 233455566666666666655433233222 11111111 3345566
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
+....-.+-+... +.+.....-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6665555555544 4455555556666666677777777777766654
No 291
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=9.5 Score=38.32 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=107.3
Q ss_pred HhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.-.|+++.|..++..++++ .-+.++.-+.+.|..++|+++ .+|.. -|.. ..+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHH
Confidence 3467888888877777632 334566667778888888764 33332 2322 34679999998876
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+....+.....+.+..|.
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~- 726 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL- 726 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch-
Confidence 5543 35568999999999999999999998763 356777788888888877777777777776553
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
...+|...|+++++.+++..-
T Consensus 727 ----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----HHHHHHHcCCHHHHHHHHHhc
Confidence 234677899999999887543
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.77 E-value=1.1 Score=25.74 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577777777777777777777777766
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.75 E-value=6.6 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCC------hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 144 QVGTALINMYSKCGSLKDARLVFDRVNDKD------VVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677778888888888888888776532 23455666777777777777777666544
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.67 E-value=3.3 Score=30.74 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4446667777777778899999999999999999999999999998875433 24446666654
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.24 E-value=1 Score=25.89 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
+|..+...+...|++++|...+++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.67 E-value=26 Score=33.32 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA----NSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
....+|..+...+++.|.++.|...+.++...++. .+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999886532 345666678888899999999999988877433
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.66 E-value=3.2 Score=34.23 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 291 GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
++.+.++.++..+.-+.|..+..-..-...+...|+|.+|.++++++
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444444333333333444444444444444444
No 298
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=33 Score=36.08 Aligned_cols=179 Identities=10% Similarity=-0.006 Sum_probs=113.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV--QVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAM 186 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 186 (480)
+...-+....+...++.|..+-+.- +.+++. .......+.+.+.|++++|..-|-+...--.. ...|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcC
Confidence 3455666667777777777664432 444432 23334455566789999998887665432111 224555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 266 (480)
.....+-..+++.+.+.|+.- ...-+.|+.+|.+.++.++-.++.+.-. + |.. ..-....+..+.+.+-+++|..
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHH
Confidence 666777778888888888663 3344568889999999998877766544 2 211 1123456777888888888888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 267 LVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 267 ~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
+-.+.+. +......+ +-..+++++|.+.++.+
T Consensus 485 LA~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 485 LATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 8777653 33333333 34567888888877653
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.41 E-value=0.55 Score=38.33 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
....+.++..|++.+..++..++++
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3444555555555544444444443
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.41 E-value=41 Score=35.27 Aligned_cols=299 Identities=8% Similarity=-0.017 Sum_probs=131.9
Q ss_pred hcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 038395 22 RGGDVLSAEKLFATMPQRSL---VSLTTMLTCYAKQGEVAAARVLFDDMEE-KDVV-CWNVMIDGYAQHGLANEALVLFR 96 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~ 96 (480)
+.|++..+.++-..+...-. ..|-.+..... ....++....+++-+. |-.. .-..-+..+.+.+++...++.+.
T Consensus 45 ~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~ 123 (644)
T PRK11619 45 DNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP 123 (644)
T ss_pred HCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 56677777777776653222 33433333221 2245566666655543 3111 12223334445666666665221
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH-----------------
Q 038395 97 RMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL----------------- 159 (480)
Q Consensus 97 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~----------------- 159 (480)
. .+.+...-.....+....|+.++|......+=.. | ...+..++.+++.+.+.|.+
T Consensus 124 ~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~-g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~ 196 (644)
T PRK11619 124 E-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT-G-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN 196 (644)
T ss_pred C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 1 1334444455566666666666554444444332 2 22334455555555544433
Q ss_pred -HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHh
Q 038395 160 -KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT---FIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 160 -~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
..|..+...+..........++..+ .++..+..++.. +.|+... ....+.-+ ...+.+.|...+...
T Consensus 197 ~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~ 267 (644)
T PRK11619 197 TGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASV-ARQDAENARLMIPSL 267 (644)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHH
Confidence 3333333322111111111112111 112222221111 1122211 11111112 234556777777766
Q ss_pred hhhcCCcCCc--cHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 236 KDEYAIEPKV--EHYGCMVNLLSRAGQVEEAYKLVMDMK-IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 236 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
....++.+.. .....+.-.....+..++|.+.++... ...+...+.--+......++.+.+...+..|.........
T Consensus 268 ~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~r 347 (644)
T PRK11619 268 VRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 347 (644)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHh
Confidence 4433333322 122333322233322556666666542 1123333333444444666776666666665442223333
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
-..=+..++...|+.++|...|+..
T Consensus 348 w~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 348 WRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666677777777777765
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.35 E-value=30 Score=33.73 Aligned_cols=131 Identities=6% Similarity=0.090 Sum_probs=72.5
Q ss_pred HhcCCHHHHHHHHhhcCCC---CHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcc
Q 038395 52 AKQGEVAAARVLFDDMEEK---DVV------CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA--CGQI 120 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~---~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~--~~~~ 120 (480)
-+.+++.+|.++|.++-+. +.. .-+-++++|..++ .+..........+. .| ...|..+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4677888888888887642 211 2345666665543 34444444444432 23 2334444444 3466
Q ss_pred CChHHHHHHHHHHHHhC-CCCC------------chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--------CChHHHHH
Q 038395 121 GALESGRWIHSYIENSR-NIKV------------NVQVGTALINMYSKCGSLKDARLVFDRVND--------KDVVVWNS 179 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~-~~~~------------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~ 179 (480)
+.+..|.+.+..-.... +..+ |-..-+..++.+.+.|++.+++.++++|.. -++.+||-
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 77777777766655420 1111 222334556667777888888777777653 26666776
Q ss_pred HHHHHHh
Q 038395 180 MIVGYAM 186 (480)
Q Consensus 180 li~~~~~ 186 (480)
++-.+.+
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 5544443
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.31 E-value=18 Score=33.03 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHc-cC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHH
Q 038395 86 GLANEALVLFRRMLA-EKVEPNEVTAVAVLSACGQ-IG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 86 g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 162 (480)
....+|+++|+..-. ..+--|..+...+++.... .+ .+..--++.+.+...++-.++..+....+..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344566666653211 2244466666666666543 11 23333344444544334566666777777777777777777
Q ss_pred HHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHH
Q 038395 163 RLVFDRVND-----KDVVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 163 ~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
.++++.... .|...|..+|..-..+|+..-...+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 777765432 36677777777777777765444433
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.27 E-value=19 Score=31.38 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
..+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-+...-..-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 3567777777777777777777777776643222222222222 23345677777655544432211122122222222
Q ss_pred HHHHcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chhHHHHHHHHHHcC
Q 038395 254 LLSRAGQVEEAYKLV-MDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-------SGTYVLLSNIYAAIG 325 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 325 (480)
-+.-++.+|..-+ ++.. ..|..-|...|-.+.- |++. .+.+++++.....++ ..+|.-|..-|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455554433 3331 2344455544433321 1111 122333333322222 247888999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 038395 326 NWDGVARVRTLMKEKGV 342 (480)
Q Consensus 326 ~~~~a~~~~~~m~~~~~ 342 (480)
+.++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876654
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.83 E-value=4.9 Score=29.86 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
++.+-++.+....+.|++....+.++||-+.+++..|..+++-++.. ...+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 45555666666678888888888888888888888888888877643 222334555444
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=47 Score=35.05 Aligned_cols=85 Identities=11% Similarity=-0.000 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 255 (480)
.-+.|+.+|.+.++.++-.++.+.-- .|.. ..-+...+..|.+.+-.++|..+-.... . .. ..+--.+
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~--he---~vl~ill 500 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----K--HE---WVLDILL 500 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----c--CH---HHHHHHH
Confidence 33445555555555554444443322 1211 0112233444455555555554333222 1 11 1222233
Q ss_pred HHcCCHHHHHHHHHhCC
Q 038395 256 SRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m~ 272 (480)
-..+++++|++++..+|
T Consensus 501 e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCHHHHHHHHhcCC
Confidence 44566777777777765
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.27 E-value=3.6 Score=33.39 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=32.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.++.++++.++..+.-+.|..+..-..-...+...|+|++|.++++++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666666666666666655555555555666666666666666665544
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.70 E-value=2 Score=25.86 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444555555444444443
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.63 E-value=2.2 Score=25.72 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888777654
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.24 E-value=5.2 Score=30.08 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+..+-++.+....+.|++....+.|.||-+.+++..|.++++-++.. ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 45555666666778888888888888888888888888888888764 2233335655553
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.06 E-value=19 Score=29.32 Aligned_cols=65 Identities=5% Similarity=0.046 Sum_probs=32.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCch-hHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hHHHHHHHHHHHh
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNV-QVGTALINMYSKCGSLKDARLVFDRVNDKD-VVVWNSMIVGYAM 186 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~ 186 (480)
..++.+.+..+++.+.-. .|+. ..-..-.-.+...|++++|.++|+++.+.. ...|..-+.++|.
T Consensus 22 ~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred hcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 355566666666655532 2321 111222333556677777777777766543 2244444444443
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.93 E-value=7.7 Score=25.35 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCc
Q 038395 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGY 389 (480)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 389 (480)
...++-++.+.|++++|.+..+.+.+. .|...++...-..+.+.|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 345777899999999999999988764 45666667666667778887774
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.73 E-value=15 Score=27.64 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 201 (480)
..++|..|-+.+... +.. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 346666666666543 211 22233333456778899999999999999999999988765 46777777777777787
Q ss_pred HcCCCCCHHHHHH
Q 038395 202 RIRLKPSDITFIG 214 (480)
Q Consensus 202 ~~g~~p~~~t~~~ 214 (480)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 765 455555543
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.71 E-value=4.3 Score=37.22 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
|.+.+..+...++..-....+++++...+-++... ...+|--++ -.-++++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 55555666666666666677788888877766541 233333333 23467788888888888999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
..+++.+++.+.+.++..+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999888887766654
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.60 E-value=2.7 Score=38.96 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=73.2
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNI 293 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~ 293 (480)
+-|.+.|.+++|...|.... .+.| ++.++..-..+|.+..++..|..=-... .+. .-...|..-..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45888999999999998876 3456 7888888888999998888776544433 111 1133455555555566788
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHH
Q 038395 294 ALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
.+|.+-++..+++.|.+.. |-..|.+.....++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 8888889999999998543 333444444444443
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.27 E-value=2.7 Score=23.92 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666777777777777777777665
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.65 E-value=16 Score=27.38 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=55.8
Q ss_pred hHHHHHHHhhCCC-CChhHHHHH--HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 038395 26 VLSAEKLFATMPQ-RSLVSLTTM--LTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEK 102 (480)
Q Consensus 26 ~~~A~~~~~~m~~-~~~~~~~~l--i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 102 (480)
.++|..+-+.... ++..--..| +..+...|++++|..+.+.+.-||...|-+|-. -+.|..+++..-+.+|-..|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4566665555442 221222223 345678899999999999999999999988865 36777777777777777776
Q ss_pred CCCCHHHHH
Q 038395 103 VEPNEVTAV 111 (480)
Q Consensus 103 ~~pd~~t~~ 111 (480)
.|....|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 45554543
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.47 E-value=6.5 Score=38.26 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=82.8
Q ss_pred hcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 186 MHGFGKDAL-QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 186 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
..|+.-.|- ++|..+....-.|+.+...+.| ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 356655444 4556666655677777666665 5678999999888887764 3455677788888888899999999
Q ss_pred HHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 265 YKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 265 ~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
..+-..| +-+ .++.+...-.......|-++++...++++..+.|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9888877 211 233333333344455677888888888888877653
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.24 E-value=2 Score=23.17 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667778888888888887764
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.23 E-value=38 Score=30.59 Aligned_cols=241 Identities=18% Similarity=0.259 Sum_probs=136.6
Q ss_pred hcCCHHHHHHHHhhcCC--CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHcc
Q 038395 53 KQGEVAAARVLFDDMEE--KD-----VVCWNVMIDGYAQHGLANEALVLFRRMLA---EKVE--PNEVTAVAVLSACGQI 120 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--pd~~t~~~ll~~~~~~ 120 (480)
+..+.++|+.-|++..+ +. -.+...+|..+.+.|++++.+..|.+|+. ..+. -+..+.++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567778777777653 21 22445678888888888888888888753 1222 2345677777776666
Q ss_pred CChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------C-------hHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVN----VQVGTALINMYSKCGSLKDARLVFDRVNDK--------D-------VVVWNSMI 181 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~-------~~~~~~li 181 (480)
.+.+.-..+++.-...-.-..+ -.+-+.|...|...|++.+..+++.++... | ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6665555554443321000111 123356777888888888888888777531 1 24677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHhhhhcCC--cCC---ccHHHH
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIR-LKPSDITFIGLLSACA-----HAGLVNEGRRFFNTMKDEYAI--EPK---VEHYGC 250 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~---~~~~~~ 250 (480)
..|....+-.+...+|++...-. --|-.. ...+|.-|. +.|.+++|-.-|-+.-+.+.- .|. .--|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 88888887777777887765422 233332 334555553 557788776444333333322 222 223555
Q ss_pred HHHHHHHcCC----HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHH
Q 038395 251 MVNLLSRAGQ----VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 251 li~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~ 299 (480)
|..++.+.|- -++|.- ..-.|.....+.|+.+|..+ ++.+-+++
T Consensus 278 LANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 5666666552 112210 02234556678888888654 44443333
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.09 E-value=6.1 Score=34.35 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.-+..+.+.+.+++|+...++- +-+| |...-..++..++..|++++|..-++.+-++.|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344556677778888887776654 4455 45556667788888888888888777777777754
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.57 E-value=44 Score=30.81 Aligned_cols=62 Identities=11% Similarity=-0.038 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 176 VWNSMIVGYAMHGFGK---DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
+...++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+++.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 455566666443222 1234444455566677777777777777753
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.22 E-value=2.6 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
|.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666666654
No 323
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.19 E-value=31 Score=28.88 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC-CCHHHHHHHHHhcCC
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-GSLKDARLVFDRVND 171 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~m~~ 171 (480)
+..+.+.+.+++|+...+..+++.+.+.|.+..-.+++..- -++++..+...|++.-.+. .-..-|...+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~----Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH----VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc----ccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34455556667777777777777777777665544443321 2233333333333222111 01223333333332
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 172 KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
..+..++..+...|++-+|+++.+..... +......++.+-.+.++...=..+|+-.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23444555666677777777776654221 1122234555555555554444444433
No 324
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.02 E-value=13 Score=29.78 Aligned_cols=65 Identities=14% Similarity=-0.011 Sum_probs=40.2
Q ss_pred CHhHHHHHHHHHHhc---CChhHHHHHHHHHHH-cCCCCch-hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLH---GNIALGEKIAEYLIS-QNLANSG-TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~---~~~~~a~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...+--.+..++... .++.++..+++.+.+ ..|.... ....|.-++.+.|+++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333444444444 346677788888886 3343222 3345666788888888888888877654
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.80 E-value=3.9 Score=22.97 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=12.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
..++...|+.++|.+.++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344444555555555555554444
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.58 E-value=33 Score=28.75 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHH
Q 038395 68 EEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGT 147 (480)
Q Consensus 68 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 147 (480)
..++...|..+|..+.+.|++... .++.+.++-||.......+-.... ....+.++=-.|.++ +. ..+.
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR--L~---~~~~ 93 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR--LG---TAYE 93 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--hh---hhHH
Confidence 346777899999999999987664 555666778887776665544433 233344443333332 11 1356
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 148 ALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
.+++.+...|++-+|.+..+....-+...-..++.+-.+.++...=..+|+-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788899999999999999887555555556667777777776655555554444
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.13 E-value=0.65 Score=37.88 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHH
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKD 192 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 192 (480)
++..+.+.+.++....+++.+.+. +...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 445555666777777777777765 5556778888888888888887888777774332 222334455555555555
Q ss_pred HHHHHHHH
Q 038395 193 ALQLFNEM 200 (480)
Q Consensus 193 A~~l~~~m 200 (480)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 55555443
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.44 E-value=8.2 Score=35.14 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
++...+.|...|.+.+|.++.++.+..+|-+...+-.|++.++..|+--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455788999999999999999999999998999999999999999888888777774
No 329
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.38 E-value=46 Score=29.73 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRM 98 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m 98 (480)
.|+--...|.++|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3455556666666666655555443
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.23 E-value=25 Score=30.35 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=18.4
Q ss_pred cCChHHHHHHHHHHHHhC--CCCCchhHHHHHHHHHHhCCCHHHH
Q 038395 120 IGALESGRWIHSYIENSR--NIKVNVQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A 162 (480)
..+.+++.+++-...+.. +-.+|+.++.+|++.|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443321 1133444444444444444444444
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.88 E-value=21 Score=30.84 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC--CcCCccHHHHHHHHHHHcCCHHHH
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA--IEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
+|.+.|-.+...+.--+......|...|. ..+.+++.+++....+-.. -.+|+..+..|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444333323333333333222 3444444444444432111 123344444444444444444444
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.48 E-value=46 Score=28.62 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH-----HHHHHHcCCHHHH
Q 038395 192 DALQLFNEMCRIRLKPSDITFI--GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM-----VNLLSRAGQVEEA 264 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A 264 (480)
+......++...+.+....++. .+...+...+++++|...++.... .|....+..+ .......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4555555555543222222222 234567788888888888887663 2333344333 3456778889999
Q ss_pred HHHHHhCCCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 265 YKLVMDMKIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 265 ~~~~~~m~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
+.+++... .++ ......-...+...|+-++|...|++.++.++.+
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 98888763 121 1222233457788888888888888888876443
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.09 E-value=5.3 Score=21.49 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
|..+...+...++++.|...++..++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33344444444555555555544444433
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.00 E-value=58 Score=32.06 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=86.5
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhcCChhHHH
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K-IEPDSVLWGTLLGACRLHGNIALGE 297 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~li~a~~~~~~~~~a~ 297 (480)
...|++-.|.+-+....+.+.-.|+ +.......+...|+++.+.+.+... + +.....+...++......|+.+.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457776665544444433333444 3333334466789999999998877 2 3345677888999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCc
Q 038395 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 347 (480)
...+.|+..+..++.........--..|-++++...++++...+.+.+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999998777666555444444556678899999999887655444433
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.63 E-value=50 Score=30.68 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
.+-..++..-.+..+++.++.++-+++... ..|+. +-..++..|. .-+++++..++..=. .||+-||..+++.+
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFTFCLL 141 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcc-hhccccchhhHHHH
Confidence 344445554455566777777766665431 12221 1112222222 234556666665555 46777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 038395 252 VNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m 271 (480)
++.+.+.+++.+|.++...|
T Consensus 142 ~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHhcccHHHHHHHHHHH
Confidence 77777777777776666555
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.38 E-value=44 Score=28.31 Aligned_cols=44 Identities=7% Similarity=0.122 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
+++|...|+++...+|.+. .|..-+.+. ++|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 5677777888888899884 666555544 4577888888777654
No 337
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.27 E-value=1.4e+02 Score=33.02 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=73.7
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 038395 31 KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTA 110 (480)
Q Consensus 31 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 110 (480)
.+...+..+|...-..-+..+.+.+..+....+...+.++|...-...+.++.+.+........+..++.. +|..+-
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR 701 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVR 701 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHH
Confidence 33344445566555555666655555443333444444454444444444443332211111222222221 344444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 038395 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 190 (480)
...+.++...+.-+ ...+. ...+ .+|..+-...+..+.+.+..+. +.....+++...-...+.++...+..
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~-~~L~----D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFA-AALG----DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHhhccCC-HHHHH-HHhc----CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 44444444332111 11111 1111 2344444444444444433221 22223344444444444455444433
Q ss_pred HH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 191 KD-ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 191 ~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
+. +...+..+.. .+|...-...+.++...|..+.+
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~ 808 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDD 808 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchh
Confidence 21 2333333332 23444444555555555544333
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.06 E-value=4.8 Score=22.58 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++..+..+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566788999999999999999998764
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.13 E-value=9.3 Score=21.64 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777888888777777655
No 340
>PRK12798 chemotaxis protein; Reviewed
Probab=74.11 E-value=89 Score=30.35 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHH
Q 038395 156 CGSLKDARLVFDRVNDK----DVVVWNSMIVGYAM-HGFGKDALQLFNEMCRIRLKPSD----ITFIGLLSACAHAGLVN 226 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 226 (480)
.|+.++|.+.+..+... ....+-+|+.+-.. ..++.+|+++|+...- ..|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68888898888887653 44566677665444 5689999999998765 23433 33444455677889999
Q ss_pred HHHHHHHHhhhhcCCcCCccHH-HHHHHHHHH---cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038395 227 EGRRFFNTMKDEYAIEPKVEHY-GCMVNLLSR---AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEY 302 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~---~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~ 302 (480)
++..+-......+.-.|=...| ..++..+.+ .-..+.-..++..|.-.--..+|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9887777666555434432222 222333333 334555566677764222356888889999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHH-----cCChhHHHHHHHHHHh
Q 038395 303 LISQNLANSGTYVLLSNIYAA-----IGNWDGVARVRTLMKE 339 (480)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~ 339 (480)
+..+...+ ..-...+..|.. ..+.+++.+.+..+..
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 99976332 233333334432 3345666665554433
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.10 E-value=64 Score=28.67 Aligned_cols=53 Identities=19% Similarity=0.034 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhC-----CCCCCHhHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 259 GQVEEAYKLVMDM-----KIEPDSVLWGTLLG---ACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 259 g~~~~A~~~~~~m-----~~~p~~~~~~~li~---a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.++++|+..|+.. +.+.+...-..++. --...+++.+|..+|+++.....+++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4555666666554 22222222223333 23456788999999999988665543
No 342
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=73.64 E-value=66 Score=28.62 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 162 ARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 162 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
+..+|.-..+|.......|+..+ ..++.++|.+.+.++.+.|..|... .+.+...+-
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 34455555556666666666554 4577888888888888888877543 333444443
No 343
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.32 E-value=8.5 Score=25.15 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
.+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999988543
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.94 E-value=1.2e+02 Score=31.26 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCC-ChHHHHHHHH----H-HHhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC--
Q 038395 159 LKDARLVFDRVNDK-DVVVWNSMIV----G-YAMHGFGKDALQLFNEMCR-------IRLKPSDITFIGLLSACAHAG-- 223 (480)
Q Consensus 159 ~~~A~~~f~~m~~~-~~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-- 223 (480)
...|.+.++...+. ++..-..+.. + +....+.+.|+..|+...+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 46777888777653 4443333333 2 4456789999999998876 45 2234555666666543
Q ss_pred ---CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH-cCCHHHHHHHHHhCCC--CCCHhHHHHHHHHH--HhcCChhH
Q 038395 224 ---LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR-AGQVEEAYKLVMDMKI--EPDSVLWGTLLGAC--RLHGNIAL 295 (480)
Q Consensus 224 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~--~p~~~~~~~li~a~--~~~~~~~~ 295 (480)
+.+.|..++...... | .|+....-..+...+. ..+...|.++|...-. .++...+-.++-.. ....+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 567788888877642 3 3444333222222222 2457889999988822 22333332222221 13357889
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
|..+++++.+.++..+..-...+..+.. ++++.+.-.+..+.+.|..
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 9999999999884443233344444555 8888888888888877764
No 345
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.83 E-value=83 Score=30.83 Aligned_cols=197 Identities=11% Similarity=0.060 Sum_probs=84.4
Q ss_pred HHhcCChHHHHHHHhhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH--HHHHHHHHHHHcCChHHHHHHH
Q 038395 20 YARGGDVLSAEKLFATMPQRSLV--SLTTMLTCYAKQGEVAAARVLFDDMEEKDVV--CWNVMIDGYAQHGLANEALVLF 95 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 95 (480)
.++.|+++.+..+++.-..++.. ...+.+...++.|+.+-+.-+++.-..++.. ...+-+...+..|+.+.+..++
T Consensus 9 A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 34567777777777654433321 1223334445667776665555543333221 1112344445666665544444
Q ss_pred HHHHHCCCCCCHH---HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH--HHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 96 RRMLAEKVEPNEV---TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV--GTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 96 ~~m~~~g~~pd~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+ .|...+.. .-.+.+...+..|+.+-+. .+.+. |..++... ..+.+...+..|+.+-+..+++.-.
T Consensus 89 ~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~----~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 89 D----LGKFADDVFYKDGMTPLHLATILKKLDIMK----LLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred H----cCCcccccccCCCCCHHHHHHHhCCHHHHH----HHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 3 22111100 0112233333445554333 33333 44443221 1233444556677666666655433
Q ss_pred C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHH
Q 038395 171 D---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF---IGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 171 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~ 230 (480)
. +|...++.|..+ +..|+.+ +.+.+.+.|..|+...- ..++...+..|..+-+.-
T Consensus 160 ~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~ 220 (413)
T PHA02875 160 CLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220 (413)
T ss_pred CCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence 2 222333333322 3345433 34444555655543221 233333344555544433
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.54 E-value=49 Score=30.20 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=40.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh-
Q 038395 79 IDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK- 155 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~- 155 (480)
|.+++..+++.+++...-+--+. .++|. ..-.-|-.|++.+....+.++-..-.+. .-.-+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 55666677777766654443322 12222 2333333456666666666655555543 112222235555554443
Q ss_pred ----CCCHHHHHHHH
Q 038395 156 ----CGSLKDARLVF 166 (480)
Q Consensus 156 ----~g~~~~A~~~f 166 (480)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 25555555444
No 347
>PRK10941 hypothetical protein; Provisional
Probab=71.59 E-value=24 Score=32.31 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..+.|-.+|.+.++++.|.+..+.++...|+++.-+.--.-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34566778899999999999999999999999887777888899999999999988877654
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.44 E-value=7.7 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=21.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 316 LLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57788999999999999999887654
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.73 E-value=11 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 350
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.65 E-value=16 Score=26.64 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=39.1
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHH---hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 038395 29 AEKLFATMPQRSLVSLTTMLTCYA---KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92 (480)
Q Consensus 29 A~~~~~~m~~~~~~~~~~li~~~~---~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 92 (480)
+.++++...++++.|....=..-+ ..|+.+.|.++++.++ +....|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 444555555555555443333333 4577777777777777 66677777777777777655443
No 351
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=69.45 E-value=1e+02 Score=28.95 Aligned_cols=109 Identities=18% Similarity=0.048 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhhhcCC---cCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 038395 225 VNEGRRFFNTMKDEYAI---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAE 301 (480)
Q Consensus 225 ~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~ 301 (480)
.++|.+.|........- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 57778888887753111 334455566667777788866666666665545677888899999999999999999999
Q ss_pred HHHHcC-CCCchhHHHHHHHHHHcCCh--hHHHHHH
Q 038395 302 YLISQN-LANSGTYVLLSNIYAAIGNW--DGVARVR 334 (480)
Q Consensus 302 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~a~~~~ 334 (480)
.+...+ ..+...+..+ ..+...+.. +.+.+.+
T Consensus 226 ~~l~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVL-AGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHCTSTS-TTTHHHHH-HHHH-CSTTCHHHHHHHH
T ss_pred HHcCCcccccHHHHHHH-HHHhcCChhhHHHHHHHH
Confidence 998853 3333333333 334323332 4444443
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.26 E-value=1.3e+02 Score=30.15 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
|-...-+++..+.++-.+.-...+..+|+.-| -+...|..++..|... ..+.-..+++++.+. .+ .|++....|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc-hhHHHHHHHH
Confidence 33444555666666666666666666666533 3445555566655555 334445555555543 22 2333444444
Q ss_pred HHHHhCCCHHHHHHHHHhcCCC------Ch---HHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVNDK------DV---VVWNSMIVGYAMHGFGKDALQLFNEMCR-IRLKPSDITFIGLLSACA 220 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~ 220 (480)
..|-+ ++.+.+...|.++..+ +. ..|..++.. -..+.+..+.+..+.+. .|..--.+.+.-+-.-|+
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 5555555555554321 10 134444321 12233444444444432 222223333334444455
Q ss_pred ccCCHHHHHHHHHHhh
Q 038395 221 HAGLVNEGRRFFNTMK 236 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~ 236 (480)
...++.+|.+++..+.
T Consensus 217 ~~eN~~eai~Ilk~il 232 (711)
T COG1747 217 ENENWTEAIRILKHIL 232 (711)
T ss_pred cccCHHHHHHHHHHHh
Confidence 5555555555555444
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.59 E-value=94 Score=28.32 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHccCChH-HHH
Q 038395 53 KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF----RRMLAEKVEPNEVTAVAVLSACGQIGALE-SGR 127 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~~~~~~~-~a~ 127 (480)
+.+++++|.+++..- ...+.+.|+...|-++- +-+.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 455666666655332 12244455544433332 22333455666655555555554443221 122
Q ss_pred HHHHHHHHhC--CC--CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 128 WIHSYIENSR--NI--KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 128 ~~~~~~~~~~--~~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+.+.+.+.. +- .-++.....+...|.+.|++.+|+.-|-.-.+++...+-.++.-....|...+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------- 139 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------- 139 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-----------
Confidence 2222222210 22 23677888899999999999999888766544444333223332222333222
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 204 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
+|...-.+++. |...+++..|...++...+.
T Consensus 140 ---~dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 140 ---ADLFIARAVLQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 23333334443 45567888888877776643
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.30 E-value=1.6e+02 Score=30.83 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=15.9
Q ss_pred HHHcCCHHHHHHHHHhCCCCC
Q 038395 255 LSRAGQVEEAYKLVMDMKIEP 275 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m~~~p 275 (480)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999998777
No 355
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.92 E-value=1.3e+02 Score=29.58 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
...|+.-|...|++.+|.+..+++---.......+-+++.+.-+.|+-..-+.+++..-..|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 346777788888888887766654322233456777888888888888877778877777665
No 356
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.77 E-value=71 Score=29.86 Aligned_cols=55 Identities=9% Similarity=0.168 Sum_probs=28.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
|.-+-.+.|+..+|.+.|+.+.++..+..-......|+.++....-+.++..++-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677777777777766553222112223445555555555555444443
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.39 E-value=78 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 147 TALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
..++.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 456778888888888888888886
No 358
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.37 E-value=52 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.37 E-value=32 Score=27.15 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+..+-++.+....+.|+.......+.||.+.+++..|.++|+.++.+. .+....|..+++ +...+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHh
Confidence 455566666777789999999999999999999999999999988543 343445655553 455666666
Q ss_pred CC
Q 038395 272 KI 273 (480)
Q Consensus 272 ~~ 273 (480)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 54
No 360
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.92 E-value=55 Score=25.02 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...++|..|.+.+... +. ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3567788888887765 33 233333444556778888888855555555678888876654 4678888888888777
Q ss_pred HHcC
Q 038395 201 CRIR 204 (480)
Q Consensus 201 ~~~g 204 (480)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.52 E-value=32 Score=32.23 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=59.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc-
Q 038395 181 IVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA- 258 (480)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 258 (480)
.+-|.+.|++++|++.|..-.. +.| |.+++..-..+|.+...+..|..--..... .| ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4568999999999999998766 456 888998888899999988877765554441 11 2234555554
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH
Q 038395 259 ------GQVEEAYKLVMDM-KIEPDS 277 (480)
Q Consensus 259 ------g~~~~A~~~~~~m-~~~p~~ 277 (480)
|...+|.+=++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 5555555555444 566763
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.73 E-value=48 Score=26.16 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=39.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 92 LVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 92 ~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
.+.++....-.+.|++...-..+++|-+.+++..|..+++-++. ...+...+|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34445555566788888888888888888888888888887765 3444444454443
No 363
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=64.53 E-value=21 Score=25.98 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=44.8
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 30 EKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 30 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
..+++.+.+.++.+....-..-+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34555666666666665555556667788888888888888888888888888877765544
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.37 E-value=94 Score=26.79 Aligned_cols=84 Identities=7% Similarity=-0.058 Sum_probs=38.9
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCchh----HHHHHHHHHHhCCCHHHHHHHHHhcCCCChHH--HHHHHHHHHhcCCh
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNVQ----VGTALINMYSKCGSLKDARLVFDRVNDKDVVV--WNSMIVGYAMHGFG 190 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~ 190 (480)
+...++++.|...++..... +.|.. +---|.......|.+|+|++.++....++-.+ ...-...+...|+-
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 44555555555555554422 22211 11122334445555555555555555443222 22223445555555
Q ss_pred HHHHHHHHHHHHc
Q 038395 191 KDALQLFNEMCRI 203 (480)
Q Consensus 191 ~~A~~l~~~m~~~ 203 (480)
++|..-|.+..+.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555554
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.54 E-value=26 Score=25.86 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.++..++.+|++...-..+...+...|++++|.+.+-.+.+..
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3455556677777777777777777777777777776665543
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.47 E-value=1.6e+02 Score=28.68 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhhh
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDI--TFIGLLSACA--HAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 237 (480)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888999999988876 555544 3333434432 45677888888887764
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.31 E-value=2.3e+02 Score=30.53 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=103.4
Q ss_pred HHhCCCHHHHHHHHHhcC----CCCh-------HHHHHHHHHH-HhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVN----DKDV-------VVWNSMIVGY-AMHGFGKDALQLFNEMCRI----RLKPSDITFIGLL 216 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~----~~~~-------~~~~~li~~~-~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 216 (480)
.....++++|..+..+.. .++. ..|+++-... ...|++++|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888776653 2211 2566654333 3467888888888877653 1223445566666
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH-----HHHHHcCCHH--HHHHHHHhC-----CCCC----CHhHH
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV-----NLLSRAGQVE--EAYKLVMDM-----KIEP----DSVLW 280 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~--~A~~~~~~m-----~~~p----~~~~~ 280 (480)
.+..-.|++++|..+.....+. .-.-+..++.... ..+-..|+.. +....|... +-+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6777788999988877766532 1123343333322 2234556322 222223222 1122 12334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCCCch---hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCc
Q 038395 281 GTLLGACRLHGNIALGEKIAEYLISQ----NLANSG---TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 281 ~~li~a~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 347 (480)
..++.++.+ .+.+..-...-.+. .|.+.. .+..|+..+...|+.++|...+.++......+.+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 444444444 44444444443332 232211 22367888888999999999888887665444333
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.02 E-value=18 Score=25.81 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=20.6
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYK 266 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 266 (480)
+...-++|+..+....+...-.|+ -.+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555433211122 2234455555555555555444
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=40 Score=30.01 Aligned_cols=50 Identities=8% Similarity=-0.075 Sum_probs=21.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
.+..+++.+..--.+++++.|+.......|.........+++|...+.+.
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444433
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.97 E-value=90 Score=25.45 Aligned_cols=78 Identities=10% Similarity=0.146 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE---------KDVVCWNVMIDGYAQHGL-ANEALVLFRRMLAEKVEPNEVTAVAV 113 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~l 113 (480)
.|.++.-.+.-+++...+.+++.+.. .+-.+|++++.+.++..- ---+..+|..|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56666666777777777777777642 355678888888866655 34567788888887788888888888
Q ss_pred HHHHHccC
Q 038395 114 LSACGQIG 121 (480)
Q Consensus 114 l~~~~~~~ 121 (480)
+.+|.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 88877653
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.39 E-value=32 Score=29.61 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=16.2
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 274 EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 274 ~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
.|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.86 E-value=20 Score=19.63 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 291 GNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
|+.+.+..++++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567788888888887776666665544
No 373
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.01 E-value=1.2e+02 Score=26.31 Aligned_cols=95 Identities=8% Similarity=0.000 Sum_probs=53.9
Q ss_pred HHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcC
Q 038395 219 CAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHG 291 (480)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~ 291 (480)
+...|++++|..-|...... +++. ...|..-..++.+.+.++.|.+--.+. .+.|. ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556666666666666532 1221 122333344566667777766554443 44443 122222234677777
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHH
Q 038395 292 NIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
.++.|+.-++++++.+|....+-.
T Consensus 183 k~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHH
Confidence 888888888888888887544433
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.93 E-value=89 Score=24.74 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 295 LGEKIAEYLISQN--LANSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 295 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
.+..+|+.|...+ ...+..|..-+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888855 45666788889999999999999999864
No 375
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.89 E-value=1.1e+02 Score=32.02 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=98.6
Q ss_pred HHHHHHHHHhCCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CCh---H-------HHHHHHHHHHhcCChHH
Q 038395 127 RWIHSYIENSRNIKVN---VQVGTALINMYSKCGSLKDARLVFDRVND-KDV---V-------VWNSMIVGYAMHGFGKD 192 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~~---~-------~~~~li~~~~~~g~~~~ 192 (480)
..++..|.+. --.|+ ..+...++-.|....+++...++.+.++. ||. + .|.--++---+-|+-++
T Consensus 183 ~~~L~~mR~R-lDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 183 NDYLDKMRTR-LDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHhh-cCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3455666654 33443 33445566677777888888888776654 221 1 23222333334577888
Q ss_pred HHHHHHHHHHc--CCCCCHHHH-----HH--HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC-HH
Q 038395 193 ALQLFNEMCRI--RLKPSDITF-----IG--LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ-VE 262 (480)
Q Consensus 193 A~~l~~~m~~~--g~~p~~~t~-----~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~ 262 (480)
|++..-.|.+. .+.||.... .- +-+.|...+..+.|.+.|++.- .+.|+...--.+...+..+|. ++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 88887777653 366776432 21 2234555667778888887765 556765443222222222332 22
Q ss_pred HHHHH------HHhC-CCCCCH----hHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 263 EAYKL------VMDM-KIEPDS----VLW--GTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 263 ~A~~~------~~~m-~~~p~~----~~~--~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
...++ +..+ +-+-.. .-| ...+.+-.-.+|+.+|.++.+.|.++.|+.
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 22111 1111 111111 111 234456667789999999999999998875
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.69 E-value=1e+02 Score=25.21 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038395 147 TALINMYSKCGSLKDARLVFDRVND---------KDVVVWNSMIVGYAMHGF-GKDALQLFNEMCRIRLKPSDITFIGLL 216 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 216 (480)
|.++.-...-+++.....+++.+.. .+-.+|.+++.+.++..- ---+..+|+-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444455544444444421 244566666666655444 334556666666666666777777777
Q ss_pred HHHHcc
Q 038395 217 SACAHA 222 (480)
Q Consensus 217 ~a~~~~ 222 (480)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666554
No 377
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.30 E-value=6.5 Score=36.60 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 258 AGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.|.+++|.+.|... ++.|. ...|..-.+++.+.+....|++=+...++++|+....|-.-..+-...|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555544 33332 33344444555566666666666666666666655555555555555666666666666
Q ss_pred HHHhCCCcc
Q 038395 336 LMKEKGVQK 344 (480)
Q Consensus 336 ~m~~~~~~~ 344 (480)
...+.++..
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 666655543
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.17 E-value=33 Score=24.57 Aligned_cols=45 Identities=4% Similarity=-0.042 Sum_probs=30.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCch---hHHHHHHHHHHcCChhHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSG---TYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~ 333 (480)
...+.+.|+..+..+++..++.+. ++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888776554433 445677777888887776654
No 379
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.89 E-value=2.1e+02 Score=28.74 Aligned_cols=58 Identities=9% Similarity=0.154 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 144 QVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
....+++..++......-.+.+-.+|.. .+-..+..++..|.++ ..++-..+++++.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 3334444444444444444444444332 2344445555555555 33444455555444
No 380
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.82 E-value=1.6e+02 Score=27.22 Aligned_cols=108 Identities=9% Similarity=0.111 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-c-CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 189 FGKDALQLFNEMCR-IRLKPSDITFIGLLSACAH-A-GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 189 ~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
...+|+++|+.... ..+--|......+++.... . .....-.++.+.+...++-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663321 2233455555555554433 1 1222233344444444455666666677777777777777777
Q ss_pred HHHHhC--C--CCCCHhHHHHHHHHHHhcCChhHH
Q 038395 266 KLVMDM--K--IEPDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 266 ~~~~~m--~--~~p~~~~~~~li~a~~~~~~~~~a 296 (480)
++++.. . ...|...|..+|..-...||....
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 666655 1 122555666666666666665433
No 381
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=57.58 E-value=1.2e+02 Score=26.11 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC------CChHHHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 038395 148 ALINMYSKCGSLKDARLVFDRVND------KDVVVWNSMIV-GYAMHGF--GKDALQLFNEMCRI 203 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 203 (480)
..+-.....|++++|..-++++.+ +-...|..+.. +|+.++. +-+|.-++.-....
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 333344455677777776666543 12334555544 5555553 44666666555443
No 382
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.23 E-value=12 Score=29.77 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=25.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
-..|.-..|..+|++|.+.|-+||. |+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999975 66777654
No 383
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.11 E-value=23 Score=32.67 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 216 (480)
-||..|..-.+.|+.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999999876666665544
No 384
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.55 E-value=2.9e+02 Score=29.82 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=53.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFR 96 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 96 (480)
=..|...|+++.|++.-..-+..=..++..-...|.+.+++..|-+++-++ ..++..+.--+....+.+ +++.|-
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L 439 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFL 439 (911)
T ss_pred HHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHH
Confidence 356777899999988765442111123444456677788888888888877 344555555555555555 555443
Q ss_pred HHHHCCCCCCHHHHHH
Q 038395 97 RMLAEKVEPNEVTAVA 112 (480)
Q Consensus 97 ~m~~~g~~pd~~t~~~ 112 (480)
.=+-..++|...+-..
T Consensus 440 ~KKL~~lt~~dk~q~~ 455 (911)
T KOG2034|consen 440 DKKLDRLTPEDKTQRD 455 (911)
T ss_pred HHHHhhCChHHHHHHH
Confidence 3333335555444333
No 385
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.50 E-value=1.8e+02 Score=30.71 Aligned_cols=148 Identities=9% Similarity=0.046 Sum_probs=79.4
Q ss_pred HccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHH
Q 038395 118 GQIGALESGRWIHSYIENSRNIKV---NVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 194 (480)
.+.+.+++|..+.+... |..+ -..++..+++.+.-.|++++|-...-.|...+..-|.--+.-++..++.....
T Consensus 367 l~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 34455566655554443 4444 34566777778888888888888888887777777777777777666654333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH--------------HHHHHHHhhhhc-CCcCCccHHHHHHHHHHHcC
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNE--------------GRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAG 259 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~--------------a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g 259 (480)
.++= ....+.+...|-.+|..+.. .+... +..+-+....+. ...-+...-..|+..|...+
T Consensus 444 ~~lP---t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~ 519 (846)
T KOG2066|consen 444 PYLP---TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDN 519 (846)
T ss_pred ccCC---CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHcc
Confidence 2211 11111233344445544443 11111 111111111000 00011122334788889999
Q ss_pred CHHHHHHHHHhCC
Q 038395 260 QVEEAYKLVMDMK 272 (480)
Q Consensus 260 ~~~~A~~~~~~m~ 272 (480)
++++|++.+-...
T Consensus 520 ~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 520 KYEKALPIYLKLQ 532 (846)
T ss_pred ChHHHHHHHHhcc
Confidence 9999999888774
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.26 E-value=90 Score=23.96 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999998876
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.20 E-value=1.5e+02 Score=27.12 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=45.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH-
Q 038395 181 IVGYAMHGFGKDALQLFNEMCR--IRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR- 257 (480)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 257 (480)
|.+++..+++.+++...-+--+ +.++|...-.. |-.|++.+.+..+.++-..-....+ .-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 5566666666666654433322 12333332222 2336677777776666655553211 1123336666666554
Q ss_pred ----cCCHHHHHHHHH
Q 038395 258 ----AGQVEEAYKLVM 269 (480)
Q Consensus 258 ----~g~~~~A~~~~~ 269 (480)
.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 477777777763
No 388
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.11 E-value=25 Score=34.49 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 258 AGQVEEAYKLVMDM-KIEPDSVL-WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~~p~~~~-~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.+.++.|..++.+. .+.||-.. |..=..++.+.+++..|..=+.++++.+|.....|.--..++.+.+.+.+|...|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 33444444444443 33443222 22222444455555555555555555555544444444445555555555555444
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.47 E-value=43 Score=28.79 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=36.8
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
....+.+......+.+.+.....|++.+|..++..+...|+.++|.++..++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555555555544455788888888888888888888888888777
No 390
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.78 E-value=1.3e+02 Score=27.11 Aligned_cols=58 Identities=10% Similarity=-0.089 Sum_probs=45.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+-.++...|++-++++.-..++...|.|..+|.--..+.+..=+.++|.+-|....+.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3345567788999999999999999999988887777777666677787777776654
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.69 E-value=1.8e+02 Score=26.93 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh----hhcCCcCCccHH
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK----DEYAIEPKVEHY 248 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 248 (480)
.+.....|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.+...++.+. +++|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444567777888888888887776642 3456667777778888888666666665543 345666655444
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.32 E-value=26 Score=32.24 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=33.8
Q ss_pred CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038395 70 KDVV-CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAV 113 (480)
Q Consensus 70 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 113 (480)
||.. -||..|..-.+.|+.++|++++++..+.|+.--..||...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3443 4788999999999999999999999998876555555443
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.18 E-value=78 Score=25.70 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 261 VEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 261 ~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
-+.|.++.+-|| .....-.........|++..|.++.+.++..+|++...-...+++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777775 223333445566788999999999999999999998887777777766553
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.83 E-value=15 Score=29.23 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=24.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 117 (480)
..|.-..|-.+|.+|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667789999999999999985 55666554
No 395
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=52.78 E-value=2.4e+02 Score=27.78 Aligned_cols=234 Identities=12% Similarity=0.015 Sum_probs=146.1
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 038395 17 VDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL 94 (480)
Q Consensus 17 l~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 94 (480)
|+++...| +.+...+-... .++...+.....++....+......+.+.+..++.......+.++...+...-.-.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~- 121 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW- 121 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH-
Confidence 77777777 55666555444 23333333334444433334446777777888888788899999988887665544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh
Q 038395 95 FRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDV 174 (480)
Q Consensus 95 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~ 174 (480)
+..+.+ .++.......+.++...+. + ....+....+ .+|..+-..-+.++++.++.+..-.+-.-....|.
T Consensus 122 L~~~L~---~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~ 192 (410)
T TIGR02270 122 LEPLLA---ASEPPGRAIGLAALGAHRH-D-PGPALEAALT----HEDALVRAAALRALGELPRRLSESTLRLYLRDSDP 192 (410)
T ss_pred HHHHhc---CCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc----CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCH
Confidence 445554 3355556666777766442 2 2223333332 46777777888888888876555444444556777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHH
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL 254 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 254 (480)
.+-..-+.+....|. .+|.......... |+......+....... ..+++...+..+.++ +. +-...+.+
T Consensus 193 ~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d----~~--vr~~a~~A 261 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA----AA--TRREALRA 261 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-CchhHHHHHHHHhcC----hh--hHHHHHHH
Confidence 777778888888888 6777776664332 2322333333333333 334777777777643 33 56678889
Q ss_pred HHHcCCHHHHHHHHHhCCC
Q 038395 255 LSRAGQVEEAYKLVMDMKI 273 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m~~ 273 (480)
+++.|+...+--+.+.|.-
T Consensus 262 lG~lg~p~av~~L~~~l~d 280 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMRE 280 (410)
T ss_pred HHHcCCcchHHHHHHHhcC
Confidence 9999999988888888863
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.61 E-value=1.5e+02 Score=25.48 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=16.4
Q ss_pred ecCCCChhHHHHHHHHHHhcC
Q 038395 4 FSLDKDLYVSTSLVDLYARGG 24 (480)
Q Consensus 4 ~g~~~d~~~~~~ll~~~~~~g 24 (480)
.|+-+|..-+|.++..+.+..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq 22 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQ 22 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhc
Confidence 578888888999888776543
No 397
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.57 E-value=98 Score=27.22 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCChh-------HHHHHHHHHHHcC--C----CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 279 LWGTLLGACRLHGNIA-------LGEKIAEYLISQN--L----ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~-------~a~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
++--+.-.|...|+.+ .|.+.|.+..+.. | +.......++..+.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4444555566666643 4555555555533 2 123455678888899999999999999987654
No 398
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=52.56 E-value=46 Score=24.55 Aligned_cols=58 Identities=9% Similarity=0.178 Sum_probs=38.6
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCh
Q 038395 31 KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 31 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 88 (480)
.+++.+.+.++.|-...-...+..-+.+.+.++++.++.++..+|..+..++-..+..
T Consensus 24 ~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 24 ELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3455555555555555444445556678888888888888888888888887665543
No 399
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.93 E-value=2.1e+02 Score=26.97 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh---CCCHHHHHH
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK---CGSLKDARL 164 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~---~g~~~~A~~ 164 (480)
.+.-+.++++.++.+ +-+.......+..+.+..+.+...+-++.+... .+-+..+|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 345566777766652 335556666777777777777777777777763 34456666666654433 123444444
Q ss_pred HHHh
Q 038395 165 VFDR 168 (480)
Q Consensus 165 ~f~~ 168 (480)
+|.+
T Consensus 124 ~y~~ 127 (321)
T PF08424_consen 124 VYEK 127 (321)
T ss_pred HHHH
Confidence 4443
No 400
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=51.78 E-value=1.7e+02 Score=25.82 Aligned_cols=158 Identities=15% Similarity=0.009 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
...||-|.--+...|+++.|.+.|+...+.... ...+...-.-++--.|+++.|.+-+...-+...-.|-...|--+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 346777777777888888888888877764321 1222222222233456777776554444432133333333322221
Q ss_pred HHHhCCCHHHHHH-HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHccC
Q 038395 152 MYSKCGSLKDARL-VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-------DITFIGLLSACAHAG 223 (480)
Q Consensus 152 ~y~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~a~~~~g 223 (480)
..-+..+|.. +.++....|..-|..-|-.|.- |+.. ...+|++.+.. -.-+ ..||--+..-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1223444433 3344455555555554444332 2211 12233333321 1111 234555566666667
Q ss_pred CHHHHHHHHHHhh
Q 038395 224 LVNEGRRFFNTMK 236 (480)
Q Consensus 224 ~~~~a~~~~~~m~ 236 (480)
++++|..+|+-..
T Consensus 252 ~~~~A~~LfKLai 264 (297)
T COG4785 252 DLDEATALFKLAV 264 (297)
T ss_pred cHHHHHHHHHHHH
Confidence 7777766666555
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.70 E-value=65 Score=32.66 Aligned_cols=38 Identities=11% Similarity=-0.111 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
.++.++.+++....+++.|.+.|+.+.++.|+++..-.
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 34444445555555555555555555555555544433
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.35 E-value=61 Score=20.55 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 115 (480)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777776666666554
No 403
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.30 E-value=86 Score=26.63 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC----hhHHHHHHHHHH
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGN----WDGVARVRTLMK 338 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 338 (480)
+++|..-|++++.++|+...++..+.++|...+. ..+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4556667777888999998999999999987664 345555555553
No 404
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.86 E-value=2.4e+02 Score=30.47 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=84.7
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 038395 52 AKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHS 131 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 131 (480)
..||+++.|++.-.++. |..+|..|...-.+.|+.+-|.-.|++.+.- .-|--.|.-.|+.++-.++..
T Consensus 654 Le~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred hhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHH
Confidence 67888888888877765 4567999999999999999999999887652 222223455678877766665
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 132 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+... .|.. ......+| .|++++-.+++.....-+..-.++ ..+|.-++|.++.++....
T Consensus 723 iae~r----~D~~-~~~qnalY--l~dv~ervkIl~n~g~~~laylta-----~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 723 IAEIR----NDAT-GQFQNALY--LGDVKERVKILENGGQLPLAYLTA-----AAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHhh----hhhH-HHHHHHHH--hccHHHHHHHHHhcCcccHHHHHH-----hhcCcHHHHHHHHHhhccc
Confidence 55432 1211 11111222 488888888888766544322221 3478888999998887653
No 405
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.59 E-value=84 Score=30.81 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHhCCCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 268 VMDMKIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 268 ~~~m~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
|...+++|. .-+..+-++.+.+++++..|-.+.+++++++|+... .+.|.+++..-.+
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~--------------a~qArKil~~~e~ 348 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV--------------AEQARKILQACER 348 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH--------------HHHHHHHHHHHCC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH--------------HHHHHHHHHHHhc
Confidence 333355553 446677778888999999999999999999886532 2456777665543
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.53 E-value=3.2e+02 Score=28.58 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=11.9
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 038395 286 ACRLHGNIALGEKIAEYLI 304 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~ 304 (480)
.+...|+.++|.....+..
T Consensus 586 ~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 586 SYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHcCcHHHHHHHHHHHH
Confidence 3556677777776666554
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.12 E-value=1e+02 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
+.......|+.++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344556667777777777777763
No 408
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=28 Score=36.84 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=47.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~ 294 (480)
+|..+.+.|-.+-|+.+.+.=..++ .....+|+++.|++.-.++. |..+|..|......+|+.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 4445556666666665544332222 22345777777777776654 5667777877777777777
Q ss_pred HHHHHHHHHHH
Q 038395 295 LGEKIAEYLIS 305 (480)
Q Consensus 295 ~a~~~~~~~~~ 305 (480)
-|+..+++...
T Consensus 690 IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 690 IAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhhh
Confidence 77777776654
No 409
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.46 E-value=2.2e+02 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=16.3
Q ss_pred HHHHHHHHhhc-C-CCCHHHHHHHHHHH
Q 038395 57 VAAARVLFDDM-E-EKDVVCWNVMIDGY 82 (480)
Q Consensus 57 ~~~A~~~f~~~-~-~~~~~~~~~li~~~ 82 (480)
++.+.++...+ + +++...|..++..+
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 66777777777 3 46667777766544
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.28 E-value=66 Score=20.37 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=22.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.+.|..+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777776666666554
No 411
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.82 E-value=2.4e+02 Score=26.60 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=8.1
Q ss_pred hHHHHHHHhcc
Q 038395 413 SEKLAVAFGLI 423 (480)
Q Consensus 413 ~e~la~~~~~~ 423 (480)
-+.+|.+||+-
T Consensus 320 l~~MA~aFgVS 330 (393)
T KOG0687|consen 320 LESMAKAFGVS 330 (393)
T ss_pred HHHHHHHhCch
Confidence 46688888873
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.70 E-value=1.3e+02 Score=28.90 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCC---CHhHHH------------------HHHHHHHhcCCh
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM----------KIEP---DSVLWG------------------TLLGACRLHGNI 293 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p---~~~~~~------------------~li~a~~~~~~~ 293 (480)
+.+.-.+...+.+.|+.+.|.+++++. .+.+ +....+ ..+..+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Q ss_pred hHHHHHHHHHHHcCCC-CchhHHHHHHHH-HHcCChhHHHHHHHH
Q 038395 294 ALGEKIAEYLISQNLA-NSGTYVLLSNIY-AAIGNWDGVARVRTL 336 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~ 336 (480)
..|.+..+-+..++|. |+..-...|+.| .+++.++--.++.+.
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.13 E-value=1e+02 Score=31.89 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=10.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhh
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
+|+.||...|++-.+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 34444444455444444444443
No 414
>PRK14700 recombination factor protein RarA; Provisional
Probab=46.25 E-value=2.5e+02 Score=26.14 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 73 VCWNVMIDGYAQ---HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 73 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
..+--+|+++.+ ..+++.|+-.+.+|++.|-.|....-..++-++-..|
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344445666655 4678888888888888887777666666666665555
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.01 E-value=1.9e+02 Score=30.03 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 038395 46 TMLTCYAKQGEVAAARVLFDDMEEK------DVVCWNVMIDGYAQHGLAN------EALVLFRRMLAEKVEPNEVTAVAV 113 (480)
Q Consensus 46 ~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~pd~~t~~~l 113 (480)
+|..+|...|++-.+.++++..... =...+|..|+...++|.++ .|-+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 5566666666666666666555421 1335666666666666543 2333333332 33456666666
Q ss_pred HHHHHc
Q 038395 114 LSACGQ 119 (480)
Q Consensus 114 l~~~~~ 119 (480)
+.+..+
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555443
No 416
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.87 E-value=2.4e+02 Score=25.77 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHhcCC----C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHccCC
Q 038395 157 GSLKDARLVFDRVND----K---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---RL--KPSDITFIGLLSACAHAGL 224 (480)
Q Consensus 157 g~~~~A~~~f~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~g~ 224 (480)
.+.++|+.-|++..+ + .-.+...||..+.+.|++++.++.|.+|... .+ .-+..+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456677777766543 1 1234455677788888888888888777531 12 2234567777777776666
Q ss_pred HHHHHHHHHHhhhhcCC----cCCccHHHHHHHHHHHcCCHHHHHHHHHhC--------C---C---CCCHhHHHHHHHH
Q 038395 225 VNEGRRFFNTMKDEYAI----EPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--------K---I---EPDSVLWGTLLGA 286 (480)
Q Consensus 225 ~~~a~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~---~---~p~~~~~~~li~a 286 (480)
.+.-..+++.-.+...- ..--.+-+-|...|...|.+.+..++++++ | . ..-..+|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66655555443321111 111223345666777777777777777665 1 0 0113466777788
Q ss_pred HHhcCChhHHHHHHHHHHHcCC--CCchhHHHHHH-----HHHHcCChhHHHHH
Q 038395 287 CRLHGNIALGEKIAEYLISQNL--ANSGTYVLLSN-----IYAAIGNWDGVARV 333 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~-----~~~~~g~~~~a~~~ 333 (480)
|..+++-..-..++++.+.... +.| .....++ +..+.|.|++|..-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhH
Confidence 8888888888888888776432 333 2223333 33466788777643
No 417
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.56 E-value=35 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
|-.-.-..|.+|.+.|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444567888888888888888877754
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.44 E-value=3e+02 Score=26.84 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChHHHH
Q 038395 52 AKQGEVAAARVLFDDMEEKDVVC--WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV--TAVAVLSACGQIGALESGR 127 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a~ 127 (480)
++.|+.+-+..+++.-..++... ..+.+...++.|+.+- .+.+.+.|..|+.. ...+.+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 45666666666666543333221 1223333445555442 23334445444322 1122333444556666555
Q ss_pred HHHH
Q 038395 128 WIHS 131 (480)
Q Consensus 128 ~~~~ 131 (480)
.+++
T Consensus 86 ~Ll~ 89 (413)
T PHA02875 86 ELLD 89 (413)
T ss_pred HHHH
Confidence 5443
No 419
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.86 E-value=4.7e+02 Score=28.94 Aligned_cols=244 Identities=18% Similarity=0.104 Sum_probs=136.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEV-AAARVLFDDMEEKDVVCWNVMIDGYAQH 85 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~f~~~~~~~~~~~~~li~~~~~~ 85 (480)
.+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+.. .....+...+..+|...-...+..+...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 456666666677777776655444455555556665555555555554321 1122222334446665555566666554
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH-HHH
Q 038395 86 GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD-ARL 164 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-A~~ 164 (480)
+..+ . ..+-++.+ .+|...-...+.++.+.+..+. +... -..++..+-...+.++...+..+. +..
T Consensus 712 ~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~----l~D~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 712 RAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGA----ATDENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred ccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHH----hcCCCHHHHHHHHHHHHHhccccchhHH
Confidence 3221 1 22333332 4566666677777777655432 2222 234566777777777777775443 233
Q ss_pred -HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC
Q 038395 165 -VFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP 243 (480)
Q Consensus 165 -~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 243 (480)
+..-+.++|...-.+.+.++.+.|....+...+..+.. .+|...=...+.++...+. +++...+..+.+ .|
T Consensus 779 ~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~----D~ 850 (897)
T PRK13800 779 AVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT----DP 850 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc----CC
Confidence 34445568888888889999999887666555555543 3455555567777777765 345555555553 45
Q ss_pred CccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+..+-...+.++++...-..+...+...
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 6555556666666643233344444333
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=2.4e+02 Score=25.37 Aligned_cols=15 Identities=0% Similarity=-0.370 Sum_probs=6.2
Q ss_pred HHHHHHhcCChHHHH
Q 038395 180 MIVGYAMHGFGKDAL 194 (480)
Q Consensus 180 li~~~~~~g~~~~A~ 194 (480)
-+..+.+..+++.+.
T Consensus 50 ralchlk~~~~~~v~ 64 (284)
T KOG4642|consen 50 RALCHLKLKHWEPVE 64 (284)
T ss_pred HHHHHHHhhhhhhhh
Confidence 334444444444443
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.62 E-value=1.3e+02 Score=22.08 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=25.4
Q ss_pred hCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHH
Q 038395 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 194 (480)
..|+.+.|+++++.++ +....|...++++-..|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3466677777777776 66666677777776666655443
No 422
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.32 E-value=4.8e+02 Score=28.55 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCH--HHHHHHHHHhhhhcCCcCC--ccHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS---DITFIGLLSACAHAGLV--NEGRRFFNTMKDEYAIEPK--VEHY 248 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~--~~a~~~~~~m~~~~~~~p~--~~~~ 248 (480)
-|..|+..|...|+.++|+++|.+....--.-| ...+-.++.-..+.+.. +-.+++-+....+ .|. ...+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~---~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK---NPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc---Cchhheeee
Confidence 477888899999999999999988865310001 11122244444444433 4444433333321 111 0011
Q ss_pred H------------HHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCC--------hhHHHHH--HHHH
Q 038395 249 G------------CMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGN--------IALGEKI--AEYL 303 (480)
Q Consensus 249 ~------------~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~--------~~~a~~~--~~~~ 303 (480)
+ --+-.|......+-+..+++.+ .-.++....+.++..|+..=+ -+++.+. -+++
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl 662 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL 662 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH
Confidence 0 1223455566677777778777 223455556666666543211 1122222 1111
Q ss_pred ---HH----cCC-------CCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 304 ---IS----QNL-------ANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 304 ---~~----~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.+ ..| +....|.-....+.+.|+-++|+.++-...
T Consensus 663 ~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 663 LDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred HHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 11 112 112355556666778999999998876654
No 423
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=42.89 E-value=28 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHCCcccCCcce
Q 038395 370 SKEIYMMLEEINGWLKAEGYVPQTQIV 396 (480)
Q Consensus 370 ~~~~~~~l~~l~~~m~~~g~~pd~~~~ 396 (480)
..++++.+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456777888888999999999998765
No 424
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=42.87 E-value=2.4e+02 Score=24.97 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+..|+.+.+.+..++|+.+.++-.+.. +.|..+-..++..++-.|++++|..-++..-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445666777777788887777766642 2244445566777777888888876665544
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.32 E-value=1.6e+02 Score=22.68 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=54.2
Q ss_pred CChHHHHHHHhhCCC-CChhHHHH--HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 24 GDVLSAEKLFATMPQ-RSLVSLTT--MLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 24 g~~~~A~~~~~~m~~-~~~~~~~~--li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
-..++|..+.+.... ++..--.+ -+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++-.
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356778877776653 22222233 3455789999999966666666799999988765 578999999998888876
Q ss_pred CCCCCCHHHHH
Q 038395 101 EKVEPNEVTAV 111 (480)
Q Consensus 101 ~g~~pd~~t~~ 111 (480)
.| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.07 E-value=43 Score=22.65 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 57 VAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 57 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
++...++.+.+.. -|-.-.-.+|.+|.+.|++++|.+...++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455554432 2444455678899999999999998887754
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.95 E-value=1.6e+02 Score=30.09 Aligned_cols=133 Identities=18% Similarity=0.089 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH-HcCCHHHHHHHHHhC-CCCCC--HhH
Q 038395 206 KPSDITFIGLLSACAHAG--LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS-RAGQVEEAYKLVMDM-KIEPD--SVL 279 (480)
Q Consensus 206 ~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p~--~~~ 279 (480)
.|+..+...++.-....- ..+-|-.++..|.+ .+.|--...| +...|. -.|+...|...+... ...|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 466666666655443322 23335555555552 2333222222 223333 358888888877766 33332 234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
...|.....+.|-...|-.++.+.+.+....+-++..+.++|....+++.|++.|+...++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44566666777777888888888888877778899999999999999999999998876553
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.93 E-value=1.4e+02 Score=22.10 Aligned_cols=52 Identities=6% Similarity=0.039 Sum_probs=34.6
Q ss_pred HhcCChhHHHHHHHHHHHcCC----CC-----chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 288 RLHGNIALGEKIAEYLISQNL----AN-----SGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.+.||+..|.+.+.+...... .. ..+...+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777666665555221 11 12334577788899999999999988754
No 429
>PRK12356 glutaminase; Reviewed
Probab=41.92 E-value=2.1e+02 Score=26.95 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=10.7
Q ss_pred ccCCHHHHHHHHHHhhhhcC
Q 038395 221 HAGLVNEGRRFFNTMKDEYA 240 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~ 240 (480)
..|+--.+..+++.+.+..+
T Consensus 288 ~~GNSv~G~~~le~ls~~~~ 307 (319)
T PRK12356 288 SAGNSVRGQKAVAYVADKLG 307 (319)
T ss_pred CCCCcHHHHHHHHHHHHHhC
Confidence 34555555565655554443
No 430
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.77 E-value=4.3e+02 Score=27.61 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred HhcCChhHHHHHHHHHHHcC---CC------CchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 288 RLHGNIALGEKIAEYLISQN---LA------NSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
...+++..|....+.+.+.. |+ .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46688888999998888732 22 13344455555667799999999997
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.30 E-value=2.9e+02 Score=25.50 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCh----HHHHHHHHHHHHhCCCCCchhHH
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNE-------VTAVAVLSACGQIGAL----ESGRWIHSYIENSRNIKVNVQVG 146 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 146 (480)
+.+...+.+++++|+..|.+.+..|+..|. .|...+...|...|+. +...+.-..|... .-+..+.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f-tk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF-TKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh-cchhHHHHH
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 147 TALINMYSKCGS-LKDARLVFDRVND---------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 147 ~~li~~y~~~g~-~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
.+|++.+-...+ +++-..+.....+ --...-.-+|..+.+.|.+.+|+.+...+...
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 432
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.92 E-value=4.5e+02 Score=27.55 Aligned_cols=68 Identities=7% Similarity=0.101 Sum_probs=38.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDME---EKDVVCWNVMIDGYAQHGL-------ANEALVLFRRMLAEKVEPNEV 108 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~ 108 (480)
+...|. +|--+.|||++++|.++..... ++....+-..+..|..+.+ -++...-|++........|+.
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 334564 5666789999999999884333 2344566677777766532 235555566665543333543
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.62 E-value=7.8e+02 Score=30.24 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHh-hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCCh
Q 038395 13 STSLVDLYARGGDVLSAEKLFA-TMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD-VVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~ 88 (480)
|..|...|+.-++++...-+.. ....|+ ...-|-.....|++++|...|+++.+ |+ ...++-++..-...|.+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l 1499 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHL 1499 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccch
Confidence 3344446666666665555544 222232 23345556778999999999999986 33 45677777666677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAV-LSACGQIGALESGRWIHS 131 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~ 131 (480)
..++-..+-.... ..+....++++ +.+--+.++++.....+.
T Consensus 1500 ~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1500 STEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 7776655444332 22333333332 344466777777776655
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.41 E-value=1.4e+02 Score=25.52 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhcCCcCC-cc-----HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 038395 225 VNEGRRFFNTMKDEYAIEPK-VE-----HYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLL 284 (480)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 284 (480)
++.|..+|+.+.++...+-+ .. .--..+-.|.+.|.+++|.+++++.--.|+......-+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 45566666666654321100 01 11233456777788888888877772255544444433
No 435
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=40.35 E-value=1.1e+02 Score=22.29 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 29 AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 29 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
+..+++.+.+.++.+-.-.-..-.+..+.++|.++.+.++.++..+|.++..++-..|...-|
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 344566666666655554444455666778888888888888888888888877766654444
No 436
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.99 E-value=1.7e+02 Score=23.25 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 294 ALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+....+|..|.+.+. ..+..|...+..+-..|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 336678888888554 455677888888899999999999885
No 437
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=39.60 E-value=3.4e+02 Score=25.79 Aligned_cols=88 Identities=10% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA-LQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
-.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+.. ..+++..... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 34567888888877777776666665555566666666555544433 3444444433 8999999999998887777
Q ss_pred HHHHHHHHHhhh
Q 038395 226 NEGRRFFNTMKD 237 (480)
Q Consensus 226 ~~a~~~~~~m~~ 237 (480)
......+..+..
T Consensus 247 ~~~~~~i~~~L~ 258 (340)
T PF12069_consen 247 DLVAILIDALLQ 258 (340)
T ss_pred hHHHHHHHHHhc
Confidence 666665666664
No 438
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.17 E-value=63 Score=28.60 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 256 SRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455566666666555 3333 35556666666666666666666666666665543
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.70 E-value=1.9e+02 Score=23.61 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=17.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC 117 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~ 117 (480)
.++..+.+.+.+-.|.++|+++.+.+...+..|.-..|..+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 34444444444444555555554444333333333333333
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.68 E-value=3.8e+02 Score=26.12 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAE--KVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (480)
.+.-+..-|...|+.+.|++.|.+.+.- ..+-....|..++....-.+++.....+.....+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 5667777888888888888888875432 1111233455566666666777766666665554
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.46 E-value=3.9e+02 Score=26.10 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC------CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
...+.-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|........+...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34567788999999999999999998654 1234566666666667777766666666544
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.41 E-value=3.4e+02 Score=25.41 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
++++.|...++.|.-..|.-+.-.+++.=.+.....+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555666665555554444555555555666666555
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.12 E-value=1.9e+02 Score=28.30 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND-----------KDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...|++.++-.||+..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777888888888776642 13345555666677777777777777765
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.56 E-value=5.7e+02 Score=27.76 Aligned_cols=218 Identities=15% Similarity=0.076 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHhhcC----CCCH-------HHHHHHHHHHH-HcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 038395 52 AKQGEVAAARVLFDDME----EKDV-------VCWNVMIDGYA-QHGLANEALVLFRRMLAE----KVEPNEVTAVAVLS 115 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~----~~~~-------~~~~~li~~~~-~~g~~~~A~~~~~~m~~~----g~~pd~~t~~~ll~ 115 (480)
....++++|..+.++.. .|+. ..|++|-.... ..|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45677888877776653 2321 25666655443 457888888887776653 12234455666677
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH-----HHHHHhCCC--HHHHHHHHHhcCC-----C-----ChHHHH
Q 038395 116 ACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL-----INMYSKCGS--LKDARLVFDRVND-----K-----DVVVWN 178 (480)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----i~~y~~~g~--~~~A~~~f~~m~~-----~-----~~~~~~ 178 (480)
+..-.|++++|..+.+...+. .-.-++..+... ...+...|. +.+....|..... . -+.+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788888888887777664 223333333222 223445562 2333333433321 1 123344
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHH---
Q 038395 179 SMIVGYAMH-GFGKDALQLFNEMCRIRLKPSDITFI--GLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCM--- 251 (480)
Q Consensus 179 ~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l--- 251 (480)
.+..++.+. +...++..-+.--......|-...+. .+.......|+.++|...++++..- ...++ ..-|.+.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHH
Confidence 444444441 11222222222222222222222222 5667777889999998888887742 22222 1112222
Q ss_pred HH--HHHHcCCHHHHHHHHHhC
Q 038395 252 VN--LLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 252 i~--~~~~~g~~~~A~~~~~~m 271 (480)
+. .....|+.++|.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 22 223567887777766663
No 445
>PRK10941 hypothetical protein; Provisional
Probab=37.15 E-value=3.3e+02 Score=24.96 Aligned_cols=60 Identities=12% Similarity=0.014 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
.+.|-.+|.+.+++++|+++-+.+... .| |..-+.--.-.+.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 455555666666666666666666653 33 3334444455566666666666655555543
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.06 E-value=3e+02 Score=24.42 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL 289 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~ 289 (480)
++.++...|+.+.|..+++.+.- .-.+......++.. ..++.+.||..+-+...-.-....|..++..+..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 44445555666666665555431 01111112222222 4456666666655554321113355555555543
No 447
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.95 E-value=1.2e+02 Score=28.44 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=59.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 252 VNLLSRAGQVEEAYKLVMDM----KIEP--DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
.+-|.+..++..|...|.+- --.| +.+.|+.-..+-...|++..++.=...++..+|.+...|.-=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34466777888888877665 1123 35677777777777788888888888888889988877776666666666
Q ss_pred ChhHHHHHHHH
Q 038395 326 NWDGVARVRTL 336 (480)
Q Consensus 326 ~~~~a~~~~~~ 336 (480)
++++|....++
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 66655554443
No 448
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.81 E-value=3.1e+02 Score=24.57 Aligned_cols=54 Identities=11% Similarity=0.216 Sum_probs=31.7
Q ss_pred HHcCCHHHHHHHHHhC---CCCCCHhHHHH---HHH-H-HH-hcCChhHHHHHHHHHHHcCCC
Q 038395 256 SRAGQVEEAYKLVMDM---KIEPDSVLWGT---LLG-A-CR-LHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m---~~~p~~~~~~~---li~-a-~~-~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+..+++.+|.++|++. .+..+..-|.. ++. + |. ...|.-.+...+++-.+..|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 4667788888888776 22233333321 221 1 22 225666777788888888885
No 449
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=36.21 E-value=4.7e+02 Score=26.37 Aligned_cols=239 Identities=9% Similarity=0.031 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------ChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCH-HH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIG------ALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSL-KD 161 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~-~~ 161 (480)
...++|++..+. -|+...+...|..|...- .+.....+++......+..+ ....|..+.-++.+...- +-
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344566666552 456666777777765443 23344455555554423333 344566666666666553 34
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcC-ChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHH--HHHHHHhh
Q 038395 162 ARLVFDRVNDKDVVVWNSMIVGYAMHG-FGK-DALQLFNEMCRIRLKPSDITFIGLLSACAHAGL-VNEG--RRFFNTMK 236 (480)
Q Consensus 162 A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a--~~~~~~m~ 236 (480)
|..+-......+...|-.-+....... +.+ .-.++|...+..-..+-...+++.. .++ +... ..++....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 444444555667777776665555331 222 2223344444332233333343333 122 1111 11222222
Q ss_pred hhcCCcCCccH-HHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCHhHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCc
Q 038395 237 DEYAIEPKVEH-YGCMVNLLSRAGQVEEAYKLVMDMK-I-EPDSVLWGTLLGACRL--HGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 237 ~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~li~a~~~--~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
+ -..|+..+ -+.+++-+-+.|-..+|...+..+. . +|....|..+|.--.. .-+..-+...++.+...--.++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 1 22344443 4677888888999999999988872 2 3467777777754322 2236667778888776333666
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
..|.--+.--...|+.+.+-.++.+.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHH
Confidence 66665555555677776666665444
No 450
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.92 E-value=2.7e+02 Score=27.27 Aligned_cols=96 Identities=15% Similarity=0.001 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHC--
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDV----------------VCWNVMIDGYAQHGLANEALVLFRRMLAE-- 101 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 101 (480)
++.+-..++..+....++.+-.+.......|+. .+.-.|++.++-.|++..|+++++.+.-.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 334444445555555555555555555433211 13344556666777777777776544211
Q ss_pred ----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 038395 102 ----KVEP-NEVTAVAVLSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 102 ----g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (480)
.+++ ...++--+.=+|.-++++..|.++|..+.-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 233555555666667777777777666654
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.84 E-value=1.8e+02 Score=24.42 Aligned_cols=36 Identities=6% Similarity=-0.019 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 158 (480)
..-.|.++++.+.+. +...+..+-.--++.+.+.|-
T Consensus 40 ~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCC
Confidence 333445555555444 333333333333444444443
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.67 E-value=2.6e+02 Score=25.17 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCR----IR-LKPSDITFIGLLSACAHAGLVNEGRRF 231 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~ 231 (480)
|..-|.+.|++++|.++|+.+.. .| ..+...+...+..+..+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44555566666666666665521 11 122333444444555555555554443
No 453
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=34.43 E-value=58 Score=24.99 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHCCcccCCccee
Q 038395 370 SKEIYMMLEEINGWLKAEGYVPQTQIVL 397 (480)
Q Consensus 370 ~~~~~~~l~~l~~~m~~~g~~pd~~~~~ 397 (480)
....+..-+.+.++|.+.||.||..|..
T Consensus 47 ~~~L~~yH~lv~~EM~~RGY~~~~~W~d 74 (120)
T TIGR02328 47 PYKLFAYHLLVMEEMATRGYHVSKQWLD 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCChhhcC
Confidence 3455555566899999999999998763
No 454
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=34.42 E-value=1.9e+02 Score=25.36 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=51.6
Q ss_pred CHHHHHHHHHhCCC-----CC-----CHhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCC--CchhHHHHH
Q 038395 260 QVEEAYKLVMDMKI-----EP-----DSVLWGTLLGACRLHG---------NIALGEKIAEYLISQNLA--NSGTYVLLS 318 (480)
Q Consensus 260 ~~~~A~~~~~~m~~-----~p-----~~~~~~~li~a~~~~~---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 318 (480)
..+.|..++.+|+. -| ...-|..+..+|.++| +.+.-..+++..++.+.+ -|..|.+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 46788888888831 11 3556778888888887 455556666666666543 344666666
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 038395 319 NIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~m~ 338 (480)
+--.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 65555556777777776664
No 455
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.27 E-value=3.1e+02 Score=27.88 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC--CHH---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEK--DVV---CWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
....++.-|.+++++++|..++..|.-. ... +.+.+...+.+..--++....++.+..
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3456777788888888888888877632 122 233444444444434444444444443
No 456
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.14 E-value=3.4e+02 Score=24.12 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=24.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
++.++...|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|..+-+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 5555555666666666666543221111 112222222 33356666665544433
No 457
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.66 E-value=1.4e+02 Score=27.72 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=24.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
.+.|+.++|..+|+.++.+.|.++....-+....-..+++-+|.+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 34556666666666666666666555444444333334444444443
No 458
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=33.60 E-value=74 Score=22.43 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=28.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 82 YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 82 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
....|+.+++.+++++..+.|..|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456888999999999998888887776666666654443
No 459
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.25 E-value=3.8e+02 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
.-...+......|++..|+++..+..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334455556667777777776666544
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.59 E-value=2.1e+02 Score=24.08 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=37.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 200 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
+...|++++..-. .++......+..-.|.++++.+.+. +..++..|.---++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455666554433 3444444445566778888888754 555565555555677777777643
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.58 E-value=2.6e+02 Score=22.73 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=8.3
Q ss_pred HHHccCCHHHHHHHHHHhh
Q 038395 218 ACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~ 236 (480)
.+...+..-.|.++++.+.
T Consensus 29 ~L~~~~~~~sAeei~~~l~ 47 (145)
T COG0735 29 LLLEADGHLSAEELYEELR 47 (145)
T ss_pred HHHhcCCCCCHHHHHHHHH
Confidence 3333333344444444444
No 462
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.53 E-value=4.9e+02 Score=25.50 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 70 KDVVCWNVMIDGYAQH---GLANEALVLFRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 70 ~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
++-..+--+|+++.++ .+++.|+-.+-+|.+.|-.|-...-..+.-++-
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsE 295 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASE 295 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 3444555666776554 677888888888888776565444444444433
No 463
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=32.53 E-value=1.7e+02 Score=20.63 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSK 155 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~ 155 (480)
+.+.|.+++..+.. .-..++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~--dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRD--DEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcc--hhhcChHHHHHHHHHHHH
Confidence 34555555555554 344556666666555544
No 464
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.52 E-value=1.7e+02 Score=27.53 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHH--HHHHHHHHhCCCHHHHH
Q 038395 86 GLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVG--TALINMYSKCGSLKDAR 163 (480)
Q Consensus 86 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~y~~~g~~~~A~ 163 (480)
--..+|.++|++.++.| ..+|+. -..+...| ..++.+.+. ..++.+| .-|.-.-.|.|++.+|.
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~------~~~da~~rR---Dtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQS------PQHEAQLRR---DTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhc------cchhhhhhc---ccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 44667888888877653 233331 11111112 222333332 3344444 33444455678999999
Q ss_pred HHHHhcCCC-Ch----HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038395 164 LVFDRVNDK-DV----VVWNSMIVGYAMHGFGKDALQLFNEMCR 202 (480)
Q Consensus 164 ~~f~~m~~~-~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (480)
+.|+.+.+. .. .....||.++....-+.+...++-+.-+
T Consensus 296 K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 296 KIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 988877642 11 2334567777666555555555554433
No 465
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.49 E-value=4.2e+02 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=17.5
Q ss_pred CCCChhHHHHHHHHHHh-cCChHHHHHHHhhCC
Q 038395 6 LDKDLYVSTSLVDLYAR-GGDVLSAEKLFATMP 37 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~-~g~~~~A~~~~~~m~ 37 (480)
++|..+. .+++..|.. .|+++...+.++...
T Consensus 26 ~dp~~f~-da~vq~~~~~~gdle~vak~ldssg 57 (412)
T KOG2297|consen 26 LDPTAFR-DAVVQGLEDNAGDLELVAKSLDSSG 57 (412)
T ss_pred CCCccHH-HHHHHHHHhcCccHHHHHHHHHhcc
Confidence 3444443 345566654 467777767666653
No 466
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=4.5e+02 Score=24.86 Aligned_cols=132 Identities=12% Similarity=0.084 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------C
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK--------D 173 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~ 173 (480)
.++.|...++++..+ +...+++-.+..+...+..|-..-....-....-|++-|+.+.|.+.+.+.-++ |
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 345555555555543 112223333333333332122223345556677899999999999888776543 4
Q ss_pred hHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 174 VVVWNSMIV-GYAMHGFGKDALQLFNEMCRIRLKPSD----ITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 174 ~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
++.+..-+. .|..+.-..+-++-.+.+.+.|-..+. .+|..+- |....++.+|-.+|-....
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444433222 233333345556666666666655443 3454443 3445678888777766654
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.46 E-value=2.6e+02 Score=22.06 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCCCc-hhHHHHHHHHHHhCCCHHHHHHHHH
Q 038395 125 SGRWIHSYIENSRNIKVN-VQVGTALINMYSKCGSLKDARLVFD 167 (480)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~f~ 167 (480)
.+..+|..|... |+... +..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555554 43332 3345555555666666666666654
No 468
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.45 E-value=2.1e+02 Score=21.00 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=39.1
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHHcCChh-HHHHHHHHH
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNIYAAIGNWD-GVARVRTLM 337 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 337 (480)
|...--.+...+...|+++.|.+.+-.+++.++. +...-..|+..+...|.-+ -+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566666777788888888888888888876653 4556677777777777743 444444444
No 469
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.24 E-value=6.1e+02 Score=26.21 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKD-VVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
...++.|+..+. .=+.+.-.++++++.. . ...|..++.+....|-.....-+.+.+....+
T Consensus 310 ~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 310 AAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 344555555543 3345555556655544 3 56777777777777766655555555544433
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.97 E-value=1.7e+02 Score=26.34 Aligned_cols=53 Identities=17% Similarity=0.059 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-------K-IEPDSVLWGTLLGACRLHGNIALGEKIAEY 302 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~li~a~~~~~~~~~a~~~~~~ 302 (480)
-|..-|.+.|++++|.++|+.+ + ..+...+...+..++...|+.+....+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455566666666666666665 0 112233444555566666776665554433
No 471
>PF14044 NETI: NETI protein
Probab=29.93 E-value=49 Score=21.81 Aligned_cols=18 Identities=28% Similarity=0.614 Sum_probs=13.9
Q ss_pred HHHHHHHHHHCCcccCCc
Q 038395 377 LEEINGWLKAEGYVPQTQ 394 (480)
Q Consensus 377 l~~l~~~m~~~g~~pd~~ 394 (480)
+.+-+.+|++.||.|-..
T Consensus 10 I~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVRR 27 (57)
T ss_pred HHHHHHHHHHcCCCceee
Confidence 445788999999998644
No 472
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.70 E-value=1.5e+02 Score=22.79 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 123 (480)
++..+...+.+-.|.++++++.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566677788888887777666777766666666666643
No 473
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.45 E-value=3e+02 Score=21.83 Aligned_cols=55 Identities=18% Similarity=0.046 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHH-HHHHHHHHhcCChhHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLW-GTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~li~a~~~~~~~~~a~~~ 299 (480)
..+..++..++.=.|..++|.+++...+-.++-... ..++..|....+.++..++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~ 121 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEI 121 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 334455555566666666666666665433333222 2355555555554444443
No 474
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=28.45 E-value=1.4e+02 Score=21.78 Aligned_cols=55 Identities=9% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q 038395 31 KLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86 (480)
Q Consensus 31 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 86 (480)
++++.+.+.++.+..-.-...+...+.+.|..+++.++ ++..+|.+++.++-..+
T Consensus 20 ~l~d~L~s~~ILt~~d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 20 RHFDYLRSKRILTRDDCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHHcCCCCHHHHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 35666666666665555555556667777777777777 77777777776665544
No 475
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=28.09 E-value=8.7e+02 Score=27.01 Aligned_cols=149 Identities=8% Similarity=-0.036 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC---CcCCc--------cHHHHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA---IEPKV--------EHYGCMVNLLSR 257 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~--------~~~~~li~~~~~ 257 (480)
..---.++|++..+ .+|..+...++-..+..|.++-+.+..+.+...+. ..-+. .+|-.=+.++..
T Consensus 671 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (932)
T PRK13184 671 FTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSN 747 (932)
T ss_pred CchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHc
Confidence 33333445554443 23444444455555778888888877776663211 11111 112223556666
Q ss_pred cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCChhHHHHHH
Q 038395 258 AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 258 ~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
...++++.+.+...+...-...+..++.-+...++.+....+.+.+....++.. .....-+.+|.-..+|++|-+++
T Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (932)
T PRK13184 748 KEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLL 827 (932)
T ss_pred cccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHH
Confidence 677888877666653111133445555556666777777777766666444322 23345677888888999999998
Q ss_pred HHHHhC
Q 038395 335 TLMKEK 340 (480)
Q Consensus 335 ~~m~~~ 340 (480)
......
T Consensus 828 ~~~~~~ 833 (932)
T PRK13184 828 NRYPLD 833 (932)
T ss_pred HhCChh
Confidence 655433
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.76 E-value=1.5e+02 Score=22.75 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 226 (480)
++..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|.+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555666678888888887777777777767777777666543
No 477
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.72 E-value=88 Score=30.85 Aligned_cols=57 Identities=5% Similarity=-0.077 Sum_probs=47.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
......++++.|..++.++++++|+.+..|..-..++.+.+++..|+.=.....+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 345566789999999999999999998777777788999999999988777666654
No 478
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.57 E-value=6.5e+02 Score=25.35 Aligned_cols=311 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCCC-Ch--hHHHHHHHHHHhcC-CHHHHHHHHhhcCC--CCHHHHHH-----HHHHHHHcCChHHHHHH
Q 038395 26 VLSAEKLFATMPQR-SL--VSLTTMLTCYAKQG-EVAAARVLFDDMEE--KDVVCWNV-----MIDGYAQHGLANEALVL 94 (480)
Q Consensus 26 ~~~A~~~~~~m~~~-~~--~~~~~li~~~~~~g-~~~~A~~~f~~~~~--~~~~~~~~-----li~~~~~~g~~~~A~~~ 94 (480)
++.|..+.+.|+.- |+ .++..|...|.... .+..|..++++..+ .+...|.. |+..+.-..++..|.++
T Consensus 70 LekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 70 LEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcc---------CChHHHHHHHHHHHHhCCCCCc--------hhHHHHHHHHHHhCC
Q 038395 95 FRRMLAEKVEPNEVTAVAVLSACGQI---------GALESGRWIHSYIENSRNIKVN--------VQVGTALINMYSKCG 157 (480)
Q Consensus 95 ~~~m~~~g~~pd~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~li~~y~~~g 157 (480)
+.-=-+. -.|-..+|..++-..+.. .+++...+..+++.+ ...+| ++-.+.-+.-|.-.|
T Consensus 150 Lavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~--n~~sdk~~~E~LkvFyl~lql~yy~~~g 226 (629)
T KOG2300|consen 150 LAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ--NISSDKTQKEMLKVFYLVLQLSYYLLPG 226 (629)
T ss_pred Hhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHHHHHHhccc
Q ss_pred CHHHHHHHHHhcCCC-------------------------------------ChHHHHHHHHHHHh--cCChHHHHHHHH
Q 038395 158 SLKDARLVFDRVNDK-------------------------------------DVVVWNSMIVGYAM--HGFGKDALQLFN 198 (480)
Q Consensus 158 ~~~~A~~~f~~m~~~-------------------------------------~~~~~~~li~~~~~--~g~~~~A~~l~~ 198 (480)
+...+...++++.+. -+..-..+..+|.+ .+..|+|+...+
T Consensus 227 q~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~e 306 (629)
T KOG2300|consen 227 QVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTE 306 (629)
T ss_pred chhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHcC-CCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC--------ccHHHHHHHHHHHcCCHHHH
Q 038395 199 EMCRIR-LKP-----SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--------VEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 199 ~m~~~g-~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A 264 (480)
+..+.. ..| -..+...++-+=.-.|+..+|++-...|..-..-.|. ...-..+.--+...+.++.|
T Consensus 307 klkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enA 386 (629)
T KOG2300|consen 307 KLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENA 386 (629)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHH
Q ss_pred HHHHHhC-----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH-------HcCChhHHHH
Q 038395 265 YKLVMDM-----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA-------AIGNWDGVAR 332 (480)
Q Consensus 265 ~~~~~~m-----~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~ 332 (480)
..-|... ...--...-..+...|.+.|+-+.--++++.+--.+...........+++. .++++.||..
T Consensus 387 e~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 387 EFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHh
Q 038395 333 VRTLMKE 339 (480)
Q Consensus 333 ~~~~m~~ 339 (480)
.+.+-.+
T Consensus 467 ~l~e~Lk 473 (629)
T KOG2300|consen 467 FLRETLK 473 (629)
T ss_pred HHHHHHh
No 479
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=27.50 E-value=1.4e+02 Score=17.59 Aligned_cols=18 Identities=11% Similarity=-0.057 Sum_probs=8.3
Q ss_pred HHHHHHHhcCChhHHHHH
Q 038395 282 TLLGACRLHGNIALGEKI 299 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~ 299 (480)
.+.-.+-..|++++|..+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333444455555555555
No 480
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=27.39 E-value=1.2e+02 Score=21.27 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=27.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 223 (480)
...|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346888899999999988888887776666665554433
No 481
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=27.31 E-value=23 Score=24.27 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=17.1
Q ss_pred ceEEEecCCcccccccccccCC
Q 038395 456 RKIMMRDRNRFHHFVNGTCSCG 477 (480)
Q Consensus 456 ~~i~~~~~~~~h~~~~g~~s~~ 477 (480)
+.|=+.|.+..|+|+||+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677889999999999986543
No 482
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=26.74 E-value=61 Score=20.40 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCcccC
Q 038395 377 LEEINGWLKAEGYVPQ 392 (480)
Q Consensus 377 l~~l~~~m~~~g~~pd 392 (480)
-+++.+.+++.||.||
T Consensus 31 r~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 31 RERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHCCCCC
Confidence 3446777888999997
No 483
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=26.65 E-value=6.3e+02 Score=24.90 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHH
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGY 184 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 184 (480)
++...-..+..++...+.......+...+. . ++..+..+.+.++...+. +-...+..-+..+|...-..-+.++
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~-~----~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLA-A----SEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRAL 171 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhc-C----CChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344455556666655555544444333332 1 122333333344443321 1111222222234444444444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
...+.. ++...+..+.. .+|...=...+.+....|. ++|...+..... .++..+.-.+...+...|. +++
T Consensus 172 G~l~~~-~a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~----~~g~~~~~~l~~~lal~~~-~~a 241 (410)
T TIGR02270 172 GELPRR-LSESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV----LEGGPHRQRLLVLLAVAGG-PDA 241 (410)
T ss_pred Hhhccc-cchHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh----ccCccHHHHHHHHHHhCCc-hhH
Confidence 444443 22233333322 2344444444455555555 444444433221 2333333333333333322 244
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 038395 265 YKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 265 ~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
.+.+...--.++ +-...+.++...|+.....-
T Consensus 242 ~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~ 273 (410)
T TIGR02270 242 QAWLRELLQAAA--TRREALRAVGLVGDVEAAPW 273 (410)
T ss_pred HHHHHHHhcChh--hHHHHHHHHHHcCCcchHHH
Confidence 444444421222 33444555555555544333
No 484
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.12 E-value=2.6e+02 Score=20.30 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=27.3
Q ss_pred hCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH
Q 038395 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (480)
..-+.+.|.++++.++.++..+|.+...++-..|...-|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 344567777777777777777777777777776655443
No 485
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.94 E-value=7.4e+02 Score=25.52 Aligned_cols=173 Identities=8% Similarity=0.005 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcCCC-CHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccC--
Q 038395 57 VAAARVLFDDMEEK-DVVCWNVMIDG-----YAQHGLANEALVLFRRMLA-------EKVEPNEVTAVAVLSACGQIG-- 121 (480)
Q Consensus 57 ~~~A~~~f~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~ll~~~~~~~-- 121 (480)
...|...++...+. ++..-..+... +....+.+.|+..|..+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776653 34433333332 4455788888888888866 44 2224445555555532
Q ss_pred ---ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh-CCCHHHHHHHHHhcCCC-ChHHHHHHHHHHH----hcCChHH
Q 038395 122 ---ALESGRWIHSYIENSRNIKVNVQVGTALINMYSK-CGSLKDARLVFDRVNDK-DVVVWNSMIVGYA----MHGFGKD 192 (480)
Q Consensus 122 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~----~~g~~~~ 192 (480)
+.+.|..++....+. |.+ +....-..+..... -.+...|.+.|...... .+.+.-.+...|. ...+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-GNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhc-CCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 566788888777765 433 33322222222222 23567788888776643 2222222222222 2336678
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 193 ALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 193 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
|..++.+.-+.| .|...--...+..+.. +..+.+...+..+.
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 888888877776 4333333333344444 55555555554444
No 486
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.88 E-value=1.4e+02 Score=26.63 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=50.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
....+|.+.+.+++.+++++-|.....|.-+...--+.|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999998877553
No 487
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.85 E-value=4.9e+02 Score=23.41 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=80.4
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 149 LINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
-+..|++.-++.-|-..++++.+| ..+-- -|--|.+..+.+---++.+-....+++-+...+.+++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 355566666666665555555543 11111 1222334444333334444444556665555555555 4567888888
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
..-++.-...+|... +..+|+-.. .|.+.....++..|.. +++++|.+++.++.+++.
T Consensus 212 lNnLQst~~g~g~Vn--------------------~enVfKv~d-~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVN--------------------QENVFKVCD-EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhccccccc--------------------hhhhhhccC-CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC
Confidence 777766554333211 122333333 5777777777777654 568888888888888776
Q ss_pred CCchhHHHHHHH
Q 038395 309 ANSGTYVLLSNI 320 (480)
Q Consensus 309 ~~~~~~~~l~~~ 320 (480)
.+......+.+.
T Consensus 270 sp~Dii~~~FRv 281 (333)
T KOG0991|consen 270 SPEDIITTLFRV 281 (333)
T ss_pred CHHHHHHHHHHH
Confidence 554444444443
No 488
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.39 E-value=7.1e+02 Score=25.09 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=15.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNEV 108 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~~ 108 (480)
+.+++++|+.++.+|...|..|...
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4566677777777776666555443
No 489
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.06 E-value=5.3e+02 Score=23.47 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred hCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHccCCHH-HHH
Q 038395 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNE----MCRIRLKPSDITFIGLLSACAHAGLVN-EGR 229 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 229 (480)
+.+++++|.+++..- ...+.++|+...|-++-.- ..+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456666766665432 1233445554444433322 233455555555455554444332211 111
Q ss_pred HHHHHhhh--hcCC--cCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 230 RFFNTMKD--EYAI--EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 230 ~~~~~m~~--~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
++.+.+.+ +.+- .-++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-....|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 22222211 0111 2345667778888999999999988775442 2333333223332222232
Q ss_pred cCCCCchhHH-HHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 306 QNLANSGTYV-LLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 306 ~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|.....|. -.+-.|...|+...|...++...++
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33333333 2344677889999999988887755
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.98 E-value=1.4e+02 Score=23.23 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
.+++......+.+-.|.++++.|.+.+...+..|.-..|..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3455556666667777777777777766666666555555555544
No 491
>PRK00971 glutaminase; Provisional
Probab=24.91 E-value=5.8e+02 Score=23.93 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=8.9
Q ss_pred ccCCHHHHHHHHHHhhhh
Q 038395 221 HAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~ 238 (480)
..|+--.+.++++.+.++
T Consensus 284 ~~GNSv~G~~~le~ls~~ 301 (307)
T PRK00971 284 AKGNSLAGTAALERLSQR 301 (307)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 344555555555555443
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.59 E-value=1.7e+02 Score=22.27 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=8.9
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 038395 78 MIDGYAQHGLANEALVLFRR 97 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~ 97 (480)
++..|...|+.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 33344444555555544444
No 493
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=24.43 E-value=1.8e+02 Score=21.64 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=28.7
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 038395 32 LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82 (480)
Q Consensus 32 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 82 (480)
+++.+.+.++.+-.-.=...+..-..+.|.++++.++.+...++..++.++
T Consensus 28 ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L 78 (94)
T cd08329 28 ILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLVKGNAAAEVFRNCL 78 (94)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555544443333333444456777777777666666666666655
No 494
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.34 E-value=1.4e+02 Score=23.24 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=32.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
+++..+...+.+-.|.++++.|.+.|...+..|.-.-|..+...|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45666666666778888888888888787777776667777766643
No 495
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.23 E-value=2.1e+02 Score=20.08 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=18.7
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q 038395 55 GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHG 86 (480)
Q Consensus 55 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 86 (480)
.+.+.+.++++.+..++..++..++.++-..+
T Consensus 41 ~~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~ 72 (80)
T cd01671 41 TRQDKARKLLDILPRKGPKAFQSFLQALQETD 72 (80)
T ss_pred ChHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 35556666666666666666666665554444
No 496
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=23.84 E-value=5.6e+02 Score=23.34 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-------hhHHHHHHHHH
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS-------GTYVLLSNIYA 322 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 322 (480)
-++-.|.|.-....=..+|+..| .| ..|..-|...|+++.|-.++--+...+..+. ..-.-|+.+..
T Consensus 158 ~Ivv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 158 EIVVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 33444445444444455666665 33 2577788889999988888777766554332 12235777788
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|+|+-+.++.+=++.-
T Consensus 232 ~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKAL 249 (258)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 899999999988877654
No 497
>PRK12356 glutaminase; Reviewed
Probab=23.79 E-value=2.6e+02 Score=26.28 Aligned_cols=207 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 138 NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 138 ~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
|.+|+-..+|+++..-...|... +=|......+-..||.+-....+++..+++++++-...+..|..+|.+
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P~------NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~S--- 163 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKPL------NPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQS--- 163 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCCC------CccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHHH---
Confidence 77777777777765443333321 001111223333444331112233444555555554456666665544
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChh-H
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIA-L 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~-~ 295 (480)
=...++-..|+.++ |+ .+|.-+ ++.++++++|-+. .+.-+..-...+...++..|--. .
T Consensus 164 -E~~t~~RNrAlA~~--lk-s~g~i~---------------~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~t 224 (319)
T PRK12356 164 -EQTTNFHNRAIAWL--LY-SYGRLY---------------CDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLT 224 (319)
T ss_pred -HHhhhHHHHHHHHH--HH-HCCCCC---------------CCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCC
Confidence 23344555555443 22 223321 3455666655444 44445555544444444444211 0
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEe---CC--EEEEEEeCCCCCCCh
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIEL---SN--KVHEFLAGDLRHPKS 370 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~---~~--~~~~~~~~~~~~~~~ 370 (480)
.+++ -++..-..+......+|.++.+-+..- +-|++-..|++--.+ -+ -+..|.-..-.|++.
T Consensus 225 g~~v---------l~~~~~r~v~s~M~TCGmYd~SG~fa~---~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~GNS 292 (319)
T PRK12356 225 GKRV---------VDADNVPYILAEMTMEGLYERSGDWAY---TVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSAGNS 292 (319)
T ss_pred CCee---------cCHHHHHHHHHHHHHcCCccchhhHHH---HhCCccccCccceeEEEeCCceEEEEECCCcCCCCCc
Confidence 0110 111222334445556777777666543 347776666542211 11 223344445567776
Q ss_pred HHHHHHHHHHHHHH
Q 038395 371 KEIYMMLEEINGWL 384 (480)
Q Consensus 371 ~~~~~~l~~l~~~m 384 (480)
-.-...++.+.+++
T Consensus 293 v~G~~~le~ls~~~ 306 (319)
T PRK12356 293 VRGQKAVAYVADKL 306 (319)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655544
No 498
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.77 E-value=4.7e+02 Score=22.46 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhh
Q 038395 216 LSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~ 237 (480)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457777777777777777663
No 499
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=23.61 E-value=2.3e+02 Score=20.39 Aligned_cols=54 Identities=9% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 038395 29 AEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGY 82 (480)
Q Consensus 29 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 82 (480)
...+++.+.+.++.+-...-..-++.-..+.|.++++.++.++..++..+..++
T Consensus 17 v~~ilD~L~~~~Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 17 VDPILDKLHGKKVITQEQYSEVRAEKTNQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 334455554444444333333333445566777777777666666666666655
No 500
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.40 E-value=7.4e+02 Score=24.62 Aligned_cols=239 Identities=10% Similarity=0.056 Sum_probs=118.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhH--HHHHHHH-----HHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Q 038395 14 TSLVDLYARGGDVLSAEKLFATMPQRSLVS--LTTMLTC-----YAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYA 83 (480)
Q Consensus 14 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~-----~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~ 83 (480)
...+...++.|+.+-...+++.-..++... ..+.+.. .+..|..+-+.-+++.-..+ |...++.|..+..
T Consensus 36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~ 115 (480)
T PHA03100 36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAIS 115 (480)
T ss_pred chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHh
Confidence 445666778899999988888765443211 1223344 56677777777776664432 3333444444432
Q ss_pred -HcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCCchh--HHHHHHHHHHhC
Q 038395 84 -QHGLANEALVLFRRMLAEKVEPNEVT--AVAVLSACGQIG--ALESGRWIHSYIENSRNIKVNVQ--VGTALINMYSKC 156 (480)
Q Consensus 84 -~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~y~~~ 156 (480)
..|+.+- ++.+.+.|..++... -.+.+..++..+ +.+.. +.+.+. |..++.. ...+-+...+..
T Consensus 116 ~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv----~~Ll~~-g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 116 KKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL----KLLIDK-GVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred cccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH----HHHHHC-CCCcccccCCCCCHHHHHHHh
Confidence 4555443 444455565553321 123444445555 44443 334444 5544322 223456667778
Q ss_pred CCHHHHHHHHHhcCCCCh--------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCH
Q 038395 157 GSLKDARLVFDRVNDKDV--------VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD---ITFIGLLSACAHAGLV 225 (480)
Q Consensus 157 g~~~~A~~~f~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~ 225 (480)
|+.+-+.-+++.-..++. ..+.+.+...+..|+ ...++.+.+.+.|..++. ...+.|..| +..|..
T Consensus 187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A-~~~~~~ 263 (480)
T PHA03100 187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYA-VYNNNP 263 (480)
T ss_pred CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCH
Confidence 888888777775444321 111333333445555 113444555556655442 233444444 345665
Q ss_pred HHHHHHHHHhhhhcCCcCCcc---HHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 226 NEGRRFFNTMKDEYAIEPKVE---HYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
+-...+++ .|..++.. -.+. +....+.+..+-+..+++.
T Consensus 264 ~iv~~Ll~-----~gad~n~~d~~g~tp-l~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 264 EFVKYLLD-----LGANPNLVNKYGDTP-LHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred HHHHHHHH-----cCCCCCccCCCCCcH-HHHHHHhCCHHHHHHHHhc
Confidence 54443332 24444422 1222 2333455665555444443
Done!