Query 038395
Match_columns 480
No_of_seqs 654 out of 3435
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:16:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.5E-31 3.3E-35 268.9 40.8 262 74-341 307-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.1E-33 3.1E-37 284.0 22.4 372 8-393 82-514 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.6E-30 5.4E-35 258.6 21.8 182 74-257 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.1E-29 1.4E-33 248.5 21.2 201 89-291 7-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4E-24 1.4E-28 207.6 37.3 323 9-339 32-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.9E-23 9.9E-28 201.5 32.8 314 7-326 64-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.9E-23 2.3E-27 202.7 33.2 321 7-336 23-405 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.2E-21 1.1E-25 190.6 31.8 294 40-340 25-358 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.3E-20 4.6E-25 189.2 30.1 329 7-341 36-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 6.3E-20 2.1E-24 184.4 29.5 329 10-341 6-445 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 1.6E-18 5.5E-23 165.3 35.5 301 10-340 3-335 (359)
12 3ieg_A DNAJ homolog subfamily 99.9 6.4E-19 2.2E-23 168.1 31.8 287 7-323 34-352 (359)
13 3fp2_A TPR repeat-containing p 99.8 1.1E-18 3.6E-23 176.5 32.0 227 109-341 245-492 (537)
14 3hym_B Cell division cycle pro 99.8 7.5E-18 2.6E-22 158.8 29.0 285 39-327 20-321 (330)
15 1fch_A Peroxisomal targeting s 99.8 3.3E-18 1.1E-22 164.2 24.1 280 51-335 35-354 (368)
16 3hym_B Cell division cycle pro 99.8 2.7E-17 9.1E-22 155.0 28.0 265 70-340 20-299 (330)
17 1b89_A Protein (clathrin heavy 99.8 2.1E-19 7.3E-24 171.0 11.9 282 21-333 14-304 (449)
18 4eqf_A PEX5-related protein; a 99.8 6E-18 2.1E-22 162.4 20.5 261 71-336 64-352 (365)
19 3fp2_A TPR repeat-containing p 99.8 1E-16 3.4E-21 162.0 27.7 323 10-341 25-408 (537)
20 3mkr_A Coatomer subunit epsilo 99.8 6.6E-16 2.2E-20 143.2 30.5 269 51-334 9-288 (291)
21 1b89_A Protein (clathrin heavy 99.8 8E-19 2.7E-23 167.1 9.9 250 53-334 15-266 (449)
22 1fch_A Peroxisomal targeting s 99.7 1E-16 3.5E-21 153.7 21.7 275 56-340 16-314 (368)
23 3cv0_A Peroxisome targeting si 99.7 2E-16 6.8E-21 148.8 22.2 271 43-337 23-312 (327)
24 4eqf_A PEX5-related protein; a 99.7 6.5E-17 2.2E-21 155.1 19.1 231 106-340 64-310 (365)
25 3spa_A Mtrpol, DNA-directed RN 99.7 3.6E-18 1.2E-22 175.1 8.5 132 139-271 123-262 (1134)
26 3spa_A Mtrpol, DNA-directed RN 99.7 6.8E-18 2.3E-22 173.1 9.7 158 42-200 128-307 (1134)
27 4g1t_A Interferon-induced prot 99.7 4.3E-15 1.5E-19 147.6 29.6 334 9-350 50-469 (472)
28 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.5E-20 141.1 23.6 247 79-341 6-265 (291)
29 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.3E-20 143.3 22.3 254 9-270 20-311 (327)
30 2xm6_A Protein corresponding t 99.7 1.1E-13 3.9E-18 138.2 37.1 303 23-341 92-433 (490)
31 2xm6_A Protein corresponding t 99.7 1.8E-13 6.1E-18 136.8 38.0 319 8-342 37-398 (490)
32 2ooe_A Cleavage stimulation fa 99.7 5.6E-14 1.9E-18 141.9 33.0 329 7-341 10-455 (530)
33 2ooe_A Cleavage stimulation fa 99.6 2.7E-13 9.3E-18 136.8 31.8 328 6-340 42-492 (530)
34 3uq3_A Heat shock protein STI1 99.6 5.5E-14 1.9E-18 127.1 23.1 225 73-340 6-236 (258)
35 3uq3_A Heat shock protein STI1 99.6 3.4E-14 1.2E-18 128.6 20.0 220 41-307 5-237 (258)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.5E-14 1.5E-18 129.2 20.8 241 84-334 17-269 (275)
37 2pl2_A Hypothetical conserved 99.6 5.6E-14 1.9E-18 124.3 20.1 195 140-338 2-212 (217)
38 1xi4_A Clathrin heavy chain; a 99.6 3.7E-12 1.3E-16 135.1 32.8 287 13-335 1052-1340(1630)
39 3u4t_A TPR repeat-containing p 99.6 3.1E-13 1.1E-17 123.5 21.1 250 44-322 6-266 (272)
40 1ouv_A Conserved hypothetical 99.6 3.6E-12 1.2E-16 116.7 27.3 225 71-310 5-255 (273)
41 2h6f_A Protein farnesyltransfe 99.5 7.4E-13 2.5E-17 127.0 22.5 245 71-323 96-365 (382)
42 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.6E-17 117.8 23.2 205 72-312 37-244 (252)
43 1xi4_A Clathrin heavy chain; a 99.5 1.4E-11 4.6E-16 130.9 33.4 280 22-332 1088-1376(1630)
44 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.7E-17 115.2 22.6 197 142-340 7-211 (225)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4E-17 118.2 22.1 197 143-341 37-239 (252)
46 3u4t_A TPR repeat-containing p 99.5 2.1E-12 7.2E-17 117.9 23.5 225 10-237 3-249 (272)
47 2pl2_A Hypothetical conserved 99.5 7.4E-13 2.5E-17 117.0 19.5 190 73-270 6-210 (217)
48 2q7f_A YRRB protein; TPR, prot 99.5 3.9E-13 1.3E-17 120.5 17.9 209 73-318 24-234 (243)
49 2vq2_A PILW, putative fimbrial 99.5 2.6E-12 8.8E-17 113.4 23.0 208 72-315 8-220 (225)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.6E-13 1.6E-17 122.5 18.4 237 54-300 18-269 (275)
51 3sf4_A G-protein-signaling mod 99.5 1.3E-12 4.4E-17 126.5 22.5 265 74-339 11-335 (406)
52 3sf4_A G-protein-signaling mod 99.5 2.9E-13 1E-17 131.1 17.3 154 175-328 188-364 (406)
53 4a1s_A PINS, partner of inscut 99.5 3.5E-13 1.2E-17 131.1 17.9 265 75-340 51-372 (411)
54 2q7f_A YRRB protein; TPR, prot 99.5 7.6E-13 2.6E-17 118.6 18.3 198 141-341 21-223 (243)
55 3ro2_A PINS homolog, G-protein 99.5 1.2E-12 4.2E-17 122.8 19.9 264 76-340 9-332 (338)
56 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.5E-16 111.9 27.2 224 106-342 5-253 (273)
57 4g1t_A Interferon-induced prot 99.5 2.3E-12 7.9E-17 127.8 21.5 301 9-316 93-469 (472)
58 3e4b_A ALGK; tetratricopeptide 99.5 1.9E-12 6.5E-17 127.7 19.2 310 16-342 9-353 (452)
59 2h6f_A Protein farnesyltransfe 99.4 4.2E-12 1.4E-16 121.8 19.5 227 107-340 97-348 (382)
60 3ro2_A PINS homolog, G-protein 99.4 2.6E-12 8.9E-17 120.6 17.3 134 175-308 184-334 (338)
61 2ond_A Cleavage stimulation fa 99.4 1E-10 3.5E-15 109.2 27.8 218 89-311 33-275 (308)
62 4a1s_A PINS, partner of inscut 99.4 2.7E-12 9.3E-17 124.8 17.6 267 42-308 49-374 (411)
63 4abn_A Tetratricopeptide repea 99.4 1.5E-12 5.2E-17 129.2 15.9 208 123-337 84-318 (474)
64 3vtx_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 103.3 20.8 166 173-341 4-171 (184)
65 3ulq_A Response regulator aspa 99.4 1.5E-11 5.1E-16 118.6 19.2 297 9-305 9-367 (383)
66 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 1E-16 119.1 13.7 242 72-338 27-305 (311)
67 3vtx_A MAMA; tetratricopeptide 99.4 2.7E-11 9.2E-16 103.6 16.4 168 141-311 3-175 (184)
68 3e4b_A ALGK; tetratricopeptide 99.4 4.8E-11 1.7E-15 117.6 20.3 312 11-342 36-389 (452)
69 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.5E-14 103.3 30.9 264 77-340 19-322 (373)
70 3ulq_A Response regulator aspa 99.3 2.5E-11 8.6E-16 117.0 17.5 285 52-339 23-367 (383)
71 3q15_A PSP28, response regulat 99.3 3.4E-10 1.2E-14 108.8 24.7 300 6-305 6-364 (378)
72 2ond_A Cleavage stimulation fa 99.3 2.9E-10 9.8E-15 106.1 23.0 212 124-341 33-271 (308)
73 4gyw_A UDP-N-acetylglucosamine 99.3 4.8E-11 1.7E-15 123.4 18.4 160 174-338 9-172 (723)
74 3as5_A MAMA; tetratricopeptide 99.3 2.1E-10 7.3E-15 97.5 18.0 159 145-340 10-173 (186)
75 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.9E-15 115.7 17.9 206 88-300 84-315 (474)
76 3nf1_A KLC 1, kinesin light ch 99.3 2.6E-11 9E-16 112.6 12.0 161 109-271 113-304 (311)
77 3as5_A MAMA; tetratricopeptide 99.2 4.7E-10 1.6E-14 95.3 17.9 158 107-269 8-168 (186)
78 3q15_A PSP28, response regulat 99.2 5.8E-10 2E-14 107.2 20.1 299 40-339 9-364 (378)
79 1hz4_A MALT regulatory protein 99.2 6.3E-09 2.1E-13 99.6 26.2 256 51-307 24-323 (373)
80 4i17_A Hypothetical protein; T 99.2 9.4E-10 3.2E-14 97.5 18.9 203 105-320 5-223 (228)
81 4i17_A Hypothetical protein; T 99.2 6.7E-10 2.3E-14 98.5 16.8 188 141-340 5-209 (228)
82 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.3E-14 99.5 16.7 152 85-236 14-196 (283)
83 4gyw_A UDP-N-acetylglucosamine 99.1 7.3E-10 2.5E-14 114.7 15.4 163 140-307 6-175 (723)
84 3mv2_B Coatomer subunit epsilo 99.1 5E-08 1.7E-12 89.0 23.3 174 162-340 85-282 (310)
85 3edt_B KLC 2, kinesin light ch 99.1 5.8E-09 2E-13 95.0 17.4 198 72-271 43-278 (283)
86 4e6h_A MRNA 3'-END-processing 99.1 2.7E-07 9.3E-12 94.4 31.2 334 7-342 63-535 (679)
87 1qqe_A Vesicular transport pro 99.0 2.1E-08 7.3E-13 92.5 20.4 170 56-236 32-226 (292)
88 1qqe_A Vesicular transport pro 99.0 6.9E-09 2.4E-13 95.9 17.0 209 87-310 32-273 (292)
89 3qky_A Outer membrane assembly 99.0 3.9E-08 1.3E-12 89.0 21.4 205 141-386 13-247 (261)
90 4e6h_A MRNA 3'-END-processing 99.0 4.8E-07 1.6E-11 92.6 29.8 214 126-342 328-572 (679)
91 3qky_A Outer membrane assembly 99.0 2.1E-08 7.1E-13 90.8 17.7 200 105-327 13-248 (261)
92 3mv2_B Coatomer subunit epsilo 99.0 1E-07 3.4E-12 87.1 20.8 178 126-312 85-288 (310)
93 2yhc_A BAMD, UPF0169 lipoprote 99.0 9.8E-08 3.3E-12 84.3 20.3 182 143-342 4-215 (225)
94 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.4E-13 79.8 14.7 129 176-339 3-131 (136)
95 2fo7_A Synthetic consensus TPR 98.9 3.4E-08 1.2E-12 78.6 15.7 124 145-271 3-129 (136)
96 3qou_A Protein YBBN; thioredox 98.9 7.1E-08 2.4E-12 88.7 18.6 175 160-338 103-282 (287)
97 2pzi_A Probable serine/threoni 98.9 7.4E-09 2.5E-13 107.3 12.3 168 154-326 402-583 (681)
98 4ga2_A E3 SUMO-protein ligase 98.9 2.7E-09 9.2E-14 87.9 6.9 138 184-326 7-149 (150)
99 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.9E-12 98.4 18.3 188 118-312 402-608 (681)
100 3rjv_A Putative SEL1 repeat pr 98.8 3.9E-07 1.3E-11 79.6 18.3 161 173-342 17-199 (212)
101 2r5s_A Uncharacterized protein 98.8 6.2E-08 2.1E-12 82.0 12.4 75 264-338 93-171 (176)
102 4ga2_A E3 SUMO-protein ligase 98.8 4.1E-08 1.4E-12 80.7 10.4 122 216-340 4-129 (150)
103 3urz_A Uncharacterized protein 98.8 4.2E-07 1.4E-11 79.1 17.5 128 78-210 60-191 (208)
104 2ifu_A Gamma-SNAP; membrane fu 98.8 2.7E-07 9.2E-12 85.7 17.1 220 85-333 4-254 (307)
105 2r5s_A Uncharacterized protein 98.7 5.4E-07 1.9E-11 76.0 17.2 152 46-201 11-171 (176)
106 3urz_A Uncharacterized protein 98.7 2.3E-07 7.9E-12 80.8 15.2 184 75-284 7-197 (208)
107 2vsy_A XCC0866; transferase, g 98.7 1.6E-07 5.4E-12 95.4 16.1 159 156-318 2-169 (568)
108 2vsy_A XCC0866; transferase, g 98.7 2.7E-07 9.3E-12 93.6 17.7 146 120-271 2-154 (568)
109 3qou_A Protein YBBN; thioredox 98.7 6.3E-07 2.2E-11 82.3 17.9 157 107-269 117-279 (287)
110 3dra_A Protein farnesyltransfe 98.7 1.3E-05 4.3E-10 73.8 26.3 227 84-317 45-299 (306)
111 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.6E-07 2.3E-11 78.9 17.1 185 106-311 3-218 (225)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.5E-07 1.9E-11 78.4 15.8 91 44-135 9-99 (213)
113 3u3w_A Transcriptional activat 98.7 3E-06 1E-10 78.0 21.6 161 179-339 80-265 (293)
114 3gyz_A Chaperone protein IPGC; 98.7 1.6E-07 5.5E-12 77.1 11.2 102 240-341 30-134 (151)
115 2qfc_A PLCR protein; TPR, HTH, 98.7 1.5E-06 5.2E-11 80.0 18.9 164 175-338 76-264 (293)
116 3rjv_A Putative SEL1 repeat pr 98.6 2E-06 6.7E-11 75.1 18.1 168 60-237 5-196 (212)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8.9E-07 3.1E-11 77.0 15.9 125 212-341 9-151 (213)
118 2vgx_A Chaperone SYCD; alterna 98.6 2.3E-07 7.8E-12 76.0 10.4 96 245-340 21-118 (148)
119 3dra_A Protein farnesyltransfe 98.6 1.5E-05 5E-10 73.4 22.7 213 122-339 48-286 (306)
120 2uy1_A Cleavage stimulation fa 98.6 1.9E-05 6.5E-10 78.2 25.1 353 9-388 14-418 (493)
121 4gco_A Protein STI-1; structur 98.6 5.4E-07 1.8E-11 71.5 11.1 93 247-339 15-109 (126)
122 3u3w_A Transcriptional activat 98.6 2.2E-06 7.5E-11 78.9 16.8 159 79-237 82-265 (293)
123 1na0_A Designed protein CTPR3; 98.5 1.5E-06 5.1E-11 67.9 13.2 114 210-325 10-125 (125)
124 1a17_A Serine/threonine protei 98.5 1.7E-06 6E-11 71.6 14.2 127 211-339 15-145 (166)
125 2c2l_A CHIP, carboxy terminus 98.5 4.2E-07 1.4E-11 83.3 11.1 191 143-340 4-199 (281)
126 4gco_A Protein STI-1; structur 98.5 1.2E-06 4E-11 69.5 11.8 109 210-320 14-124 (126)
127 2ifu_A Gamma-SNAP; membrane fu 98.5 6.5E-07 2.2E-11 83.1 11.9 197 119-338 3-222 (307)
128 2qfc_A PLCR protein; TPR, HTH, 98.5 6.5E-06 2.2E-10 75.7 18.3 161 145-305 77-265 (293)
129 1p5q_A FKBP52, FK506-binding p 98.5 6.9E-07 2.4E-11 84.1 11.9 93 246-338 197-292 (336)
130 2vyi_A SGTA protein; chaperone 98.5 2.3E-06 7.9E-11 67.3 13.0 116 210-327 13-130 (131)
131 2xcb_A PCRH, regulatory protei 98.5 2.2E-06 7.4E-11 69.4 12.8 96 245-340 18-115 (142)
132 3gw4_A Uncharacterized protein 98.5 2.3E-06 7.9E-11 73.5 13.6 116 53-168 4-132 (203)
133 2lni_A Stress-induced-phosphop 98.5 2.3E-06 7.8E-11 67.8 12.5 113 211-325 18-132 (133)
134 4f3v_A ESX-1 secretion system 98.4 4.1E-06 1.4E-10 75.4 14.7 179 53-236 18-235 (282)
135 3gw4_A Uncharacterized protein 98.4 5.4E-06 1.8E-10 71.2 15.1 148 21-168 3-172 (203)
136 3q7a_A Farnesyltransferase alp 98.4 0.00027 9.1E-09 65.8 26.6 178 75-260 57-257 (349)
137 4f3v_A ESX-1 secretion system 98.4 1.2E-06 4.1E-11 78.9 10.4 135 178-317 106-247 (282)
138 1a17_A Serine/threonine protei 98.4 7E-06 2.4E-10 67.8 14.5 124 73-199 14-142 (166)
139 2kck_A TPR repeat; tetratricop 98.4 3E-06 1E-10 64.7 10.9 98 245-342 6-108 (112)
140 2e2e_A Formate-dependent nitri 98.4 2.6E-06 8.8E-11 71.7 10.9 119 221-341 22-145 (177)
141 3upv_A Heat shock protein STI1 98.4 3.5E-06 1.2E-10 66.4 11.0 95 246-340 5-101 (126)
142 1hxi_A PEX5, peroxisome target 98.3 2.1E-06 7.1E-11 67.4 9.1 96 246-341 18-115 (121)
143 1na0_A Designed protein CTPR3; 98.3 7.8E-06 2.7E-10 63.6 12.2 97 245-341 9-107 (125)
144 3q49_B STIP1 homology and U bo 98.3 7.3E-06 2.5E-10 65.4 12.3 98 243-340 7-106 (137)
145 2lni_A Stress-induced-phosphop 98.3 6.6E-06 2.2E-10 65.0 11.4 97 244-340 15-113 (133)
146 1wao_1 Serine/threonine protei 98.3 2.7E-06 9.4E-11 84.0 10.7 116 218-336 15-135 (477)
147 1elw_A TPR1-domain of HOP; HOP 98.3 8.8E-06 3E-10 62.6 11.6 92 248-339 7-100 (118)
148 2c2l_A CHIP, carboxy terminus 98.3 2.3E-06 8E-11 78.2 9.3 93 74-169 6-98 (281)
149 3dss_A Geranylgeranyl transfer 98.3 0.00023 8E-09 65.8 22.5 228 84-320 41-318 (331)
150 2uy1_A Cleavage stimulation fa 98.3 0.0006 2.1E-08 67.4 27.0 122 211-339 288-412 (493)
151 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.7E-10 69.3 12.8 172 149-341 10-187 (198)
152 2vyi_A SGTA protein; chaperone 98.3 1.6E-05 5.4E-10 62.4 12.9 93 73-168 13-105 (131)
153 2e2e_A Formate-dependent nitri 98.3 1.2E-05 4.3E-10 67.4 12.9 126 185-313 21-151 (177)
154 3sz7_A HSC70 cochaperone (SGT) 98.3 7.3E-06 2.5E-10 68.0 11.3 94 247-340 13-108 (164)
155 2dba_A Smooth muscle cell asso 98.3 1.3E-05 4.4E-10 64.7 12.5 94 246-339 29-127 (148)
156 1elw_A TPR1-domain of HOP; HOP 98.3 1.7E-05 5.9E-10 60.9 12.6 108 211-320 6-115 (118)
157 2dba_A Smooth muscle cell asso 98.2 2.3E-05 7.8E-10 63.2 13.7 108 210-320 29-142 (148)
158 1p5q_A FKBP52, FK506-binding p 98.2 1.7E-05 5.8E-10 74.5 13.8 133 57-193 129-283 (336)
159 2vgx_A Chaperone SYCD; alterna 98.2 6.2E-06 2.1E-10 67.3 9.4 101 210-313 22-125 (148)
160 3gyz_A Chaperone protein IPGC; 98.2 2.1E-05 7.3E-10 64.2 12.3 90 44-134 39-131 (151)
161 3upv_A Heat shock protein STI1 98.2 1.6E-05 5.4E-10 62.6 11.1 107 211-319 6-120 (126)
162 2xcb_A PCRH, regulatory protei 98.2 1.2E-05 4.1E-10 64.9 10.6 100 212-314 21-123 (142)
163 4gcn_A Protein STI-1; structur 98.2 9.2E-06 3.2E-10 64.3 9.5 93 247-339 10-111 (127)
164 2fbn_A 70 kDa peptidylprolyl i 98.2 3.5E-06 1.2E-10 72.4 7.5 50 52-101 15-67 (198)
165 1wao_1 Serine/threonine protei 98.2 3.4E-05 1.2E-09 76.1 15.6 116 150-269 13-134 (477)
166 4b4t_Q 26S proteasome regulato 98.2 4.7E-05 1.6E-09 73.9 16.5 162 110-271 58-242 (434)
167 3sz7_A HSC70 cochaperone (SGT) 98.1 2.2E-05 7.4E-10 65.1 11.8 105 209-316 11-118 (164)
168 3q7a_A Farnesyltransferase alp 98.1 0.00023 7.9E-09 66.2 19.6 215 121-340 68-331 (349)
169 2xev_A YBGF; tetratricopeptide 98.1 1.7E-05 5.8E-10 62.5 10.5 90 251-340 8-105 (129)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.5E-05 5.2E-10 78.3 11.3 95 245-339 317-414 (457)
171 2xev_A YBGF; tetratricopeptide 98.1 9.1E-05 3.1E-09 58.1 13.4 97 216-315 9-114 (129)
172 3rkv_A Putative peptidylprolyl 98.1 4.3E-05 1.5E-09 63.1 11.9 64 277-340 63-126 (162)
173 1elr_A TPR2A-domain of HOP; HO 98.0 2.3E-05 7.9E-10 61.5 9.6 95 246-340 5-108 (131)
174 3q49_B STIP1 homology and U bo 98.0 4.3E-05 1.5E-09 60.8 11.1 100 208-309 8-109 (137)
175 2hr2_A Hypothetical protein; a 98.0 2.6E-05 9E-10 63.4 9.6 63 278-340 58-131 (159)
176 3k9i_A BH0479 protein; putativ 98.0 7E-06 2.4E-10 63.8 6.0 82 258-339 3-89 (117)
177 2kck_A TPR repeat; tetratricop 98.0 2.4E-05 8.4E-10 59.4 9.1 97 212-310 9-110 (112)
178 4gcn_A Protein STI-1; structur 98.0 4.8E-05 1.7E-09 60.0 10.9 60 176-236 10-69 (127)
179 4b4t_Q 26S proteasome regulato 98.0 0.00016 5.4E-09 70.1 17.0 161 145-305 57-244 (434)
180 3ro3_A PINS homolog, G-protein 98.0 5.8E-05 2E-09 61.5 11.9 92 248-339 52-157 (164)
181 1elr_A TPR2A-domain of HOP; HO 98.0 2.5E-05 8.4E-10 61.3 9.2 110 176-318 6-119 (131)
182 3n71_A Histone lysine methyltr 98.0 5.1E-05 1.7E-09 74.7 12.9 125 218-342 318-466 (490)
183 3ro3_A PINS homolog, G-protein 98.0 4.2E-05 1.5E-09 62.4 10.5 95 212-306 52-158 (164)
184 1ihg_A Cyclophilin 40; ppiase 98.0 6.8E-05 2.3E-09 71.3 12.6 88 245-332 273-362 (370)
185 3dss_A Geranylgeranyl transfer 97.9 0.0037 1.3E-07 57.7 23.4 217 119-340 41-304 (331)
186 1hxi_A PEX5, peroxisome target 97.9 5.1E-05 1.7E-09 59.3 9.2 94 214-310 22-118 (121)
187 3k9i_A BH0479 protein; putativ 97.8 2.2E-05 7.4E-10 60.9 5.9 91 222-313 3-97 (117)
188 2if4_A ATFKBP42; FKBP-like, al 97.8 2.9E-05 1E-09 72.9 6.8 147 174-340 179-328 (338)
189 3rkv_A Putative peptidylprolyl 97.8 7.8E-05 2.7E-09 61.5 8.6 67 245-311 63-131 (162)
190 1dce_A Protein (RAB geranylger 97.8 0.0016 5.4E-08 65.5 19.4 168 159-329 45-244 (567)
191 2if4_A ATFKBP42; FKBP-like, al 97.8 7.3E-05 2.5E-09 70.2 9.0 149 143-311 179-333 (338)
192 2hr2_A Hypothetical protein; a 97.7 6.7E-05 2.3E-09 61.1 7.0 67 247-313 59-138 (159)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00026 8.9E-09 69.4 12.8 118 72-193 268-404 (457)
194 2kat_A Uncharacterized protein 97.7 0.00016 5.3E-09 55.7 8.6 78 263-340 3-82 (115)
195 3ma5_A Tetratricopeptide repea 97.7 0.00024 8.3E-09 53.2 9.3 65 276-340 6-70 (100)
196 2l6j_A TPR repeat-containing p 97.7 9.7E-05 3.3E-09 56.1 7.1 90 245-334 4-101 (111)
197 1na3_A Designed protein CTPR2; 97.7 0.00041 1.4E-08 50.3 10.0 81 245-325 9-91 (91)
198 1ihg_A Cyclophilin 40; ppiase 97.6 0.00045 1.5E-08 65.6 12.4 118 43-163 225-361 (370)
199 3n71_A Histone lysine methyltr 97.6 0.00067 2.3E-08 66.7 13.0 115 254-386 318-450 (490)
200 3qwp_A SET and MYND domain-con 97.5 0.0008 2.7E-08 65.1 12.9 116 252-385 294-427 (429)
201 2l6j_A TPR repeat-containing p 97.5 0.00017 5.9E-09 54.7 6.0 94 72-169 4-104 (111)
202 1zu2_A Mitochondrial import re 97.4 0.00016 5.5E-09 58.7 5.3 86 256-341 13-121 (158)
203 3bee_A Putative YFRE protein; 97.4 0.0013 4.5E-08 48.3 9.5 69 274-342 3-74 (93)
204 3qww_A SET and MYND domain-con 97.2 0.0013 4.6E-08 63.4 9.8 82 258-339 311-410 (433)
205 1klx_A Cysteine rich protein B 97.1 0.0024 8.1E-08 51.0 9.4 111 188-307 9-127 (138)
206 1na3_A Designed protein CTPR2; 97.1 0.0021 7.1E-08 46.4 8.3 65 276-340 8-72 (91)
207 1wy6_A Hypothetical protein ST 97.1 0.06 2.1E-06 41.6 16.5 139 186-343 19-157 (172)
208 1klx_A Cysteine rich protein B 97.1 0.0072 2.5E-07 48.1 11.7 113 223-343 9-129 (138)
209 1zu2_A Mitochondrial import re 97.0 0.00069 2.4E-08 54.9 5.2 74 261-341 62-148 (158)
210 3mkq_A Coatomer beta'-subunit; 97.0 0.04 1.4E-06 57.8 20.4 100 19-134 608-708 (814)
211 3qww_A SET and MYND domain-con 97.0 0.0044 1.5E-07 59.8 11.4 93 221-313 310-423 (433)
212 3qwp_A SET and MYND domain-con 97.0 0.0075 2.6E-07 58.2 12.7 101 215-315 293-414 (429)
213 1dce_A Protein (RAB geranylger 97.0 0.034 1.2E-06 55.8 17.8 166 88-261 45-242 (567)
214 2kat_A Uncharacterized protein 96.9 0.0048 1.7E-07 47.0 9.0 78 228-308 4-84 (115)
215 3ma5_A Tetratricopeptide repea 96.9 0.0045 1.6E-07 46.0 8.4 58 143-200 7-67 (100)
216 3mkq_A Coatomer beta'-subunit; 96.9 0.074 2.5E-06 55.8 20.7 97 52-169 610-707 (814)
217 1pc2_A Mitochondria fission pr 96.8 0.011 3.9E-07 47.2 10.6 102 263-390 16-124 (152)
218 3ly7_A Transcriptional activat 96.8 0.039 1.3E-06 51.3 15.1 137 172-310 192-343 (372)
219 2kc7_A BFR218_protein; tetratr 96.7 0.012 4.1E-07 43.2 9.7 64 251-314 6-72 (99)
220 2kc7_A BFR218_protein; tetratr 96.6 0.0081 2.8E-07 44.2 7.7 59 283-341 6-65 (99)
221 3ly7_A Transcriptional activat 96.4 0.072 2.5E-06 49.5 14.3 62 173-236 276-337 (372)
222 3mkq_B Coatomer subunit alpha; 95.9 0.31 1E-05 40.0 14.1 130 150-303 12-141 (177)
223 3mkq_B Coatomer subunit alpha; 95.8 0.63 2.2E-05 38.1 16.5 102 51-170 15-116 (177)
224 2v5f_A Prolyl 4-hydroxylase su 95.8 0.059 2E-06 40.2 8.9 69 247-315 7-84 (104)
225 3bee_A Putative YFRE protein; 95.6 0.066 2.3E-06 39.0 8.3 67 243-309 4-75 (93)
226 3u64_A Protein TP_0956; tetrat 95.6 0.054 1.9E-06 48.3 9.0 87 261-347 179-276 (301)
227 1nzn_A CGI-135 protein, fissio 95.1 0.17 5.7E-06 38.9 9.2 65 275-339 33-102 (126)
228 1pc2_A Mitochondria fission pr 94.5 0.16 5.6E-06 40.5 8.2 71 243-313 30-107 (152)
229 1qsa_A Protein (soluble lytic 94.2 5.3 0.00018 40.2 24.4 113 189-305 229-347 (618)
230 2v5f_A Prolyl 4-hydroxylase su 94.0 0.29 9.9E-06 36.3 8.5 65 276-340 4-75 (104)
231 1y8m_A FIS1; mitochondria, unk 93.3 2.3 7.9E-05 33.3 13.8 91 274-390 36-130 (144)
232 4b4t_P 26S proteasome regulato 93.3 6 0.0002 38.0 19.2 186 86-271 30-244 (445)
233 1wy6_A Hypothetical protein ST 93.3 2.3 7.8E-05 33.0 15.3 84 155-241 73-156 (172)
234 4gns_B Protein CSD3, chitin bi 92.9 1.5 5E-05 45.1 13.8 54 285-338 345-398 (754)
235 3lvg_A Clathrin heavy chain 1; 92.1 3.1E-05 1.1E-09 73.4 -19.7 262 41-332 54-325 (624)
236 3u64_A Protein TP_0956; tetrat 91.9 0.44 1.5E-05 42.5 7.4 79 89-170 180-267 (301)
237 2ff4_A Probable regulatory pro 91.4 0.47 1.6E-05 44.9 7.8 69 280-348 174-247 (388)
238 3lvg_A Clathrin heavy chain 1; 91.4 0.00012 4E-09 69.6 -16.7 164 9-193 53-218 (624)
239 4h7y_A Dual specificity protei 91.1 2 6.8E-05 34.0 9.5 56 259-315 74-132 (161)
240 1nzn_A CGI-135 protein, fissio 90.9 1.9 6.6E-05 33.0 9.2 72 243-314 33-111 (126)
241 4h7y_A Dual specificity protei 90.8 1.2 4.3E-05 35.2 8.2 55 289-343 72-126 (161)
242 2p58_C Putative type III secre 90.4 3.9 0.00013 29.6 9.8 87 121-213 21-107 (116)
243 1v54_E Cytochrome C oxidase po 90.3 1.9 6.5E-05 31.3 8.0 74 189-273 25-98 (109)
244 3o48_A Mitochondria fission 1 89.8 2.4 8.3E-05 32.7 8.9 66 275-340 38-107 (134)
245 2uwj_G Type III export protein 89.8 3.6 0.00012 29.7 9.0 87 121-213 20-106 (115)
246 3ltm_A Alpha-REP4; protein eng 89.2 8.8 0.0003 32.1 16.1 188 24-224 16-203 (211)
247 1v54_E Cytochrome C oxidase po 88.0 2.5 8.5E-05 30.7 7.2 61 89-151 27-87 (109)
248 4ady_A RPN2, 26S proteasome re 86.9 28 0.00097 36.6 17.4 249 50-304 383-656 (963)
249 4fhn_B Nucleoporin NUP120; pro 86.0 40 0.0014 36.8 19.1 22 148-169 847-868 (1139)
250 2ff4_A Probable regulatory pro 85.8 3.3 0.00011 39.0 9.3 55 180-235 177-231 (388)
251 2y69_E Cytochrome C oxidase su 85.6 3.7 0.00013 31.6 7.5 74 189-273 68-141 (152)
252 4gns_B Protein CSD3, chitin bi 85.4 3.3 0.00011 42.5 9.5 50 151-200 345-397 (754)
253 3ltj_A Alpharep-4; protein eng 84.9 15 0.00052 30.2 17.1 183 28-223 15-197 (201)
254 4fhn_B Nucleoporin NUP120; pro 84.6 29 0.001 37.8 17.2 86 109-194 901-991 (1139)
255 3ffl_A Anaphase-promoting comp 83.9 7.6 0.00026 31.3 9.1 113 45-171 24-150 (167)
256 3txn_A 26S proteasome regulato 83.8 29 0.00098 32.5 16.3 129 108-236 20-166 (394)
257 3lpz_A GET4 (YOR164C homolog); 83.1 27 0.00093 31.8 23.9 166 147-339 39-215 (336)
258 2uwj_G Type III export protein 82.9 11 0.00038 27.2 9.5 83 25-111 21-106 (115)
259 2p58_C Putative type III secre 82.3 12 0.00041 27.1 10.2 83 25-111 22-107 (116)
260 3lpz_A GET4 (YOR164C homolog); 81.1 32 0.0011 31.3 21.9 168 43-237 37-215 (336)
261 2y69_E Cytochrome C oxidase su 81.0 6.7 0.00023 30.2 7.2 60 90-151 71-130 (152)
262 3ffl_A Anaphase-promoting comp 80.9 11 0.00038 30.3 9.0 22 251-272 128-149 (167)
263 3ltm_A Alpha-REP4; protein eng 80.7 23 0.00079 29.3 20.1 187 56-260 17-203 (211)
264 2wpv_A GET4, UPF0363 protein Y 80.6 32 0.0011 31.0 21.2 169 43-238 35-217 (312)
265 4b4t_P 26S proteasome regulato 78.5 47 0.0016 31.6 19.2 185 121-305 30-246 (445)
266 1zbp_A Hypothetical protein VP 77.9 5.8 0.0002 34.8 7.0 55 255-309 7-63 (273)
267 3ltj_A Alpharep-4; protein eng 77.7 28 0.00095 28.6 19.5 183 59-259 15-197 (201)
268 3txn_A 26S proteasome regulato 74.2 58 0.002 30.5 21.3 157 12-168 21-206 (394)
269 1zbp_A Hypothetical protein VP 73.6 41 0.0014 29.5 11.2 51 185-236 8-58 (273)
270 2wpv_A GET4, UPF0363 protein Y 73.0 53 0.0018 29.5 22.6 167 146-339 36-216 (312)
271 4ady_A RPN2, 26S proteasome re 72.8 1E+02 0.0034 32.6 20.4 260 20-287 384-671 (963)
272 1oyz_A Hypothetical protein YI 71.0 52 0.0018 28.6 22.2 238 32-286 28-276 (280)
273 3mv2_A Coatomer subunit alpha; 68.7 51 0.0018 29.7 10.9 60 268-341 196-257 (325)
274 2nsz_A Programmed cell death p 65.6 26 0.0009 26.8 7.6 64 146-209 10-78 (129)
275 4b4t_R RPN7, 26S proteasome re 63.5 41 0.0014 31.9 10.2 59 247-305 133-196 (429)
276 4b4t_R RPN7, 26S proteasome re 62.5 85 0.0029 29.7 12.2 96 176-271 133-234 (429)
277 2nsz_A Programmed cell death p 62.5 36 0.0012 26.0 7.8 63 44-106 10-77 (129)
278 1wdy_A 2-5A-dependent ribonucl 62.5 74 0.0025 27.3 12.1 56 13-68 5-63 (285)
279 3o48_A Mitochondria fission 1 61.1 54 0.0018 25.2 9.6 70 243-312 38-113 (134)
280 1wdy_A 2-5A-dependent ribonucl 60.2 33 0.0011 29.6 8.5 24 46-69 7-30 (285)
281 4b4t_S RPN3, 26S proteasome re 59.6 1.3E+02 0.0045 29.2 12.7 61 143-203 231-299 (523)
282 3esl_A Checkpoint serine/threo 57.8 81 0.0028 26.2 14.0 89 278-392 81-171 (202)
283 2r9g_A AAA ATPase, central reg 57.2 74 0.0025 26.3 9.0 64 76-141 15-86 (204)
284 2ion_A PDCD4, programmed cell 56.2 27 0.00091 27.7 6.2 63 146-208 12-79 (152)
285 1oyz_A Hypothetical protein YI 56.0 1E+02 0.0034 26.7 25.5 228 63-309 28-266 (280)
286 2qx5_A Nucleoporin NIC96; mRNA 56.0 1.2E+02 0.0043 30.4 12.4 227 78-337 300-564 (661)
287 1qsa_A Protein (soluble lytic 54.9 1.7E+02 0.006 29.1 26.5 169 158-339 229-409 (618)
288 4gq2_M Nucleoporin NUP120; bet 54.7 2.1E+02 0.0072 30.3 14.7 48 109-157 899-950 (950)
289 1y8m_A FIS1; mitochondria, unk 54.2 75 0.0026 24.7 11.0 71 243-313 37-113 (144)
290 2ion_A PDCD4, programmed cell 53.7 34 0.0012 27.0 6.5 62 44-105 12-78 (152)
291 2pk8_A Uncharacterized protein 53.1 9.5 0.00033 26.8 2.6 47 368-422 13-59 (103)
292 4a1g_A Mitotic checkpoint seri 52.7 83 0.0028 24.8 9.3 51 294-344 82-134 (152)
293 2l0z_A Glycoprotein G2; zinc-b 52.6 3.4 0.00012 23.9 0.3 18 462-479 11-29 (42)
294 2wvi_A Mitotic checkpoint seri 47.8 1.1E+02 0.0036 24.5 9.6 50 295-344 78-129 (164)
295 3ctd_A Putative ATPase, AAA fa 46.1 1.1E+02 0.0037 25.5 8.4 67 73-140 33-107 (213)
296 3bge_A Predicted ATPase; struc 45.4 1.2E+02 0.0039 25.1 8.3 46 76-121 8-56 (201)
297 3eiq_C Programmed cell death p 44.8 1.9E+02 0.0064 26.6 15.6 29 43-71 56-84 (358)
298 4gq2_M Nucleoporin NUP120; bet 44.1 2.4E+02 0.0083 29.8 13.1 85 215-305 816-925 (950)
299 1n11_A Ankyrin; clathrin, BAND 41.6 1.6E+02 0.0056 27.3 10.6 301 14-343 15-336 (437)
300 3mkr_B Coatomer subunit alpha; 40.8 1.1E+02 0.0037 27.5 8.2 62 267-342 186-249 (320)
301 3hra_A Ankyrin repeat family p 40.5 66 0.0022 26.0 6.7 15 154-168 114-128 (201)
302 3kea_A K1L; tropism, ANK repea 38.7 1.7E+02 0.0059 25.3 9.6 179 152-345 37-222 (285)
303 3eu9_A Huntingtin-interacting 38.3 52 0.0018 27.4 5.9 83 258-341 152-237 (240)
304 2d2s_A Exocyst complex compone 35.6 89 0.0031 26.7 6.7 28 243-270 89-116 (235)
305 2lo3_A SAGA-associated factor 35.2 12 0.00041 21.9 0.8 13 436-448 16-28 (44)
306 2fe3_A Peroxide operon regulat 35.0 1.1E+02 0.0037 23.7 6.7 60 98-159 13-72 (145)
307 3ygs_P Procaspase 9; apoptosis 34.9 50 0.0017 23.7 4.3 39 55-93 51-89 (97)
308 3bu8_A Telomeric repeat-bindin 33.4 1.2E+02 0.0041 25.4 6.7 47 225-271 88-140 (235)
309 2p1h_A APAF-1, apoptotic prote 33.3 53 0.0018 23.2 4.2 39 53-91 48-86 (94)
310 3ygs_P Procaspase 9; apoptosis 33.1 58 0.002 23.3 4.4 38 157-194 51-88 (97)
311 4aez_C MAD3, mitotic spindle c 32.7 1.2E+02 0.0043 25.5 6.9 51 294-344 131-183 (223)
312 3ljn_A Hypothetical protein; a 32.6 1.7E+02 0.0059 26.3 8.9 16 255-270 251-266 (364)
313 1ug3_A EIF4GI, eukaryotic prot 32.1 2.2E+02 0.0075 25.8 9.2 26 14-39 15-40 (339)
314 2d2s_A Exocyst complex compone 31.4 2.4E+02 0.0083 23.9 9.1 28 311-338 91-118 (235)
315 2fe3_A Peroxide operon regulat 29.4 1.6E+02 0.0054 22.7 6.8 63 199-263 12-74 (145)
316 1k1a_A B-cell lymphoma 3-encod 29.3 1.5E+02 0.005 24.6 7.3 182 77-269 11-204 (241)
317 2zu6_B Programmed cell death p 28.9 3.1E+02 0.011 24.4 14.5 28 13-40 6-33 (307)
318 3eiq_C Programmed cell death p 28.5 1.5E+02 0.0051 27.2 7.3 62 44-105 220-286 (358)
319 2xig_A Ferric uptake regulatio 27.6 1.9E+02 0.0066 22.4 7.0 60 98-159 18-77 (150)
320 2xig_A Ferric uptake regulatio 26.7 2.1E+02 0.0073 22.1 7.1 61 200-262 18-78 (150)
321 1ug3_A EIF4GI, eukaryotic prot 25.9 3.7E+02 0.013 24.2 10.9 62 44-105 14-79 (339)
322 2yru_A Steroid receptor RNA ac 25.6 1.1E+02 0.0036 23.0 4.7 43 94-136 48-90 (118)
323 2zu6_B Programmed cell death p 24.6 1.6E+02 0.0053 26.4 6.6 61 44-104 169-234 (307)
324 3bqo_A Telomeric repeat-bindin 24.5 3E+02 0.01 22.7 7.6 27 285-311 125-151 (211)
325 2k0q_A Putative uncharacterize 23.9 18 0.00062 23.9 0.2 23 456-478 8-30 (74)
326 4b4t_S RPN3, 26S proteasome re 23.5 1.9E+02 0.0065 28.1 7.2 62 210-271 232-296 (523)
327 1n11_A Ankyrin; clathrin, BAND 23.2 3.8E+02 0.013 24.7 9.6 300 15-344 49-370 (437)
328 2hgo_A CASSIICOLIN; toxin, dis 23.0 17 0.00058 18.2 -0.1 13 468-480 8-22 (27)
329 4ets_A Ferric uptake regulatio 22.4 1.6E+02 0.0055 23.3 5.7 59 99-158 25-84 (162)
330 4ets_A Ferric uptake regulatio 22.3 1.9E+02 0.0064 22.9 6.1 72 191-263 14-87 (162)
331 3b7b_A Euchromatic histone-lys 21.9 1.2E+02 0.0041 25.1 5.3 16 323-338 219-234 (237)
332 2yru_A Steroid receptor RNA ac 21.5 1.2E+02 0.0042 22.6 4.4 43 195-237 47-89 (118)
333 3ljn_A Hypothetical protein; a 21.1 2.6E+02 0.009 25.0 7.8 18 253-270 178-195 (364)
334 2p1h_A APAF-1, apoptotic prote 21.0 1.8E+02 0.0061 20.3 5.2 38 156-193 49-86 (94)
335 3aji_A 26S proteasome non-ATPa 20.7 3.4E+02 0.012 22.0 8.3 19 150-168 10-28 (231)
336 3l6a_A Eukaryotic translation 20.4 2E+02 0.0069 26.4 6.6 80 147-226 16-100 (364)
337 3hra_A Ankyrin repeat family p 20.4 2.1E+02 0.0073 22.7 6.4 17 153-169 12-28 (201)
338 2o03_A Probable zinc uptake re 20.3 1.7E+02 0.0056 22.1 5.2 45 77-121 15-59 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-31 Score=268.90 Aligned_cols=262 Identities=10% Similarity=0.022 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+ ..+.+..+++.++.+|
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHH
Confidence 33344444444444444444444443322 11333344444444444444444444444443 2345678889999999
Q ss_pred HhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 154 SKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998753 478899999999999999999999999998764 3478899999999999999999999
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcCChhHHHHHHH
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD--SVLWGTLLGACRLHGNIALGEKIAE 301 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~ 301 (480)
+|+.+.+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 463 YLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999854 2346888999999999999999999999988 45777 7899999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 302 YLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
++.+.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-33 Score=283.96 Aligned_cols=372 Identities=10% Similarity=-0.036 Sum_probs=305.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHH
Q 038395 8 KDLYVSTSLVDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDME--EKDVVCWNVMIDGYA 83 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~ 83 (480)
+++..|+.++..|.+.|++++|..+|++|. .|+..+|..++.+|.+.|++++|..+|+++. .++..+|+.++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 577889999999999999999999999986 4788899999999999999999999999984 578899999999999
Q ss_pred HcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH---
Q 038395 84 QHGLANEALVLFRRMLAE---------------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV--- 145 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~---------------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 145 (480)
+.|++++|+++|+++... |.+++..++..++.++.+.|++++|.++|+.+.+. + +.+...
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~ 239 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-D-AKCYEAFDQ 239 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-chhhHHHHH
Confidence 999999999999853221 22345789999999999999999999999999876 2 222333
Q ss_pred -----------------------------------HHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcC
Q 038395 146 -----------------------------------GTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHG 188 (480)
Q Consensus 146 -----------------------------------~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g 188 (480)
|+.++.+|.++|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 23335667788999999999999987 78999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
++++|+++|+++.+.+. .+..++..++.++...|+.++|..+++.+.+. .+.+..+++.++.+|.+.|++++|.++|
T Consensus 320 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999987653 36778889999999999999999999998843 2445788899999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 038395 269 MDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEP 346 (480)
Q Consensus 269 ~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 346 (480)
+++ ...| +..+|+.++.++.+.|++++|.++++++.+..|++..+|..++.+|.+.|++++|.++|+++.+.... ++
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 988 3334 57899999999999999999999999999999998899999999999999999999999999875422 12
Q ss_pred ceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccCC
Q 038395 347 GCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQT 393 (480)
Q Consensus 347 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 393 (480)
..|.. +...+...++.+++.+.++++.+...+.|..|+.
T Consensus 476 -~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 476 -LLLNE-------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -HHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -HHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 12211 1223445788888888777776666666777774
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.6e-30 Score=258.60 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHhCCCCCchh
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA---------LESGRWIHSYIENSRNIKVNVQ 144 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 144 (480)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+. |+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-KVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-TCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-CCCCCHH
Confidence 4666777777777777777777777777777777777777777765443 56677777777776 7777777
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
+|++||++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 777777777777777777777777753 5777777777777777777777777777777777777777777777777
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR 257 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 257 (480)
+.|++++|.++|++|.+. +..|+..||+.+++.|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 777777777777777743 777777777777777654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.1e-29 Score=248.46 Aligned_cols=201 Identities=9% Similarity=0.096 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC---------
Q 038395 89 NEALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS--------- 158 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------- 158 (480)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+. |+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4456677788877776654 46889999999999999999999999999 999999999999999998765
Q ss_pred HHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 159 LKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 159 ~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
++.|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 6889999999964 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcC
Q 038395 235 MKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 235 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~ 291 (480)
|.+. |+.||..+|++||++|++.|++++|.++|++| +..|+..||+.++..|...+
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9964 99999999999999999999999999999999 88999999999999987643
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=4e-24 Score=207.58 Aligned_cols=323 Identities=11% Similarity=0.040 Sum_probs=228.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGY 82 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 82 (480)
+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|++++|...|+++.+ | +..+|..+..++
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 345566666777777777777777766542 3556777777777777777777777777653 3 445677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHH
Q 038395 83 AQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKD 161 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 161 (480)
.+.|++++|++.|+++.+. .| +...+..+...+...|++++|.+.+..+.+. .+.+..++..+...|.+.|++++
T Consensus 112 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777764 34 3445566666677777777777777777764 34456677777777777777777
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 162 ARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 162 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...|+.+.+.
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777653 345667777777777777777777777776642 224566777777777777888887777777642
Q ss_pred cCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 239 YAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 239 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
.| +...|..+...|.+.|++++|.+.|+++ .. +++..+|..+...+...|++++|...++++++..|++..++.
T Consensus 267 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 267 ---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp ---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 33 3556777777777778888877777776 22 235677777777777777888888777777777777777777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 038395 316 LLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.++.+|.+.|++++|.+.++++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777888888777777765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=2.9e-23 Score=201.46 Aligned_cols=314 Identities=12% Similarity=0.095 Sum_probs=277.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMP--QR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~ 80 (480)
+.+..+|+.+...|.+.|++++|...|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+..
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 5578899999999999999999999999886 34 456899999999999999999999999864 4 4567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
.+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|+++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998852 335788999999999999999999999999985 3556788999999999999999
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 161 DARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 161 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
+|...|++... .+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999987653 467899999999999999999999999999853 22467889999999999999999999999985
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++.+|.
T Consensus 300 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 300 L--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4 2456788999999999999999999999998 5555 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 038395 316 LLSNIYAAIGN 326 (480)
Q Consensus 316 ~l~~~~~~~g~ 326 (480)
.+...+...|+
T Consensus 378 ~lg~~~~~~~~ 388 (388)
T 1w3b_A 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHccC
Confidence 99988877664
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.9e-23 Score=202.68 Aligned_cols=321 Identities=13% Similarity=0.089 Sum_probs=272.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMID 80 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 80 (480)
+.++..+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34567899999999999999999999998763 4678999999999999999999999999874 35789999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHhCCCCCchh
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNE----VTAVAV------------LSACGQIGALESGRWIHSYIENSRNIKVNVQ 144 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 144 (480)
.|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|++++|...++.+.+. .+.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 999999999999999999885 4543 455444 44488899999999999999975 456788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHH-----
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-ITFIGL----- 215 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l----- 215 (480)
++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+. ..+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 999999999999999999999998864 57889999999999999999999999999874 4443 333333
Q ss_pred -------HHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 038395 216 -------LSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWG 281 (480)
Q Consensus 216 -------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 281 (480)
..++.+.|++++|..+|+.+.+. .|+ ..++..+...+.+.|++++|.+.++++ ...| +..+|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 78899999999999999999854 455 447889999999999999999999997 4445 689999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH------------HHHHcC-----ChhHHHHHHHH
Q 038395 282 TLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN------------IYAAIG-----NWDGVARVRTL 336 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~ 336 (480)
.+..+|...|++++|...++++++..|.++.++..+.. .|...| +.+++.+.+++
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999988888884 455555 44555666655
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.2e-21 Score=190.63 Aligned_cols=294 Identities=11% Similarity=0.053 Sum_probs=254.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038395 40 SLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA 116 (480)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~ 116 (480)
+..+|..+...|.+.|++++|..+|+++.+ .+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 567899999999999999999999999864 468899999999999999999999999999864 4467889999999
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCCch---hHHHHH------------HHHHHhCCCHHHHHHHHHhcCC---CChHHHH
Q 038395 117 CGQIGALESGRWIHSYIENSRNIKVNV---QVGTAL------------INMYSKCGSLKDARLVFDRVND---KDVVVWN 178 (480)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~ 178 (480)
+...|++++|...++.+.+. .+.+. ..+..+ ...|.+.|++++|...|+++.+ .+...|.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999864 23344 555555 4448999999999999998764 4778999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHH------
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCM------ 251 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l------ 251 (480)
.+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998753 346788999999999999999999999999843 455 3344444
Q ss_pred ------HHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 038395 252 ------VNLLSRAGQVEEAYKLVMDM-KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSN 319 (480)
Q Consensus 252 ------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 319 (480)
...|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...++++++..|+++.++..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999998 44454 4578889999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHhC
Q 038395 320 IYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...|++++|...++++.+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-20 Score=189.24 Aligned_cols=329 Identities=9% Similarity=-0.065 Sum_probs=261.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------------
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD------------ 71 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------------ 71 (480)
.||..++..+...|.+.|++++|...|+++.+ | +..+|..+..+|.+.|++++|...|+++.+.+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 46788888888888888888888888887652 3 45678888888888888888888887653211
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 038395 72 ----------------------------------------------------------------------VVCWNVMIDG 81 (480)
Q Consensus 72 ----------------------------------------------------------------------~~~~~~li~~ 81 (480)
...|..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2223333333
Q ss_pred HHH---cCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 82 YAQ---HGLANEALVLFRRMLA-----EKVEP--------NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 82 ~~~---~g~~~~A~~~~~~m~~-----~g~~p--------d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
+.. .|++++|+..|+++.+ ....| +..++..+...+...|++++|...++.+.+. . |+..+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~ 272 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNS 272 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHH
Confidence 333 7888888888888877 31122 2456777778888889999999999988876 3 23778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 222 (480)
+..+...|...|++++|...|+++.. .+..+|..+...|...|++++|+..|++..+... .+...+..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHc
Confidence 88888999999999999999988754 3677899999999999999999999999987542 2567788888899999
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHh---cC
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD----SVLWGTLLGACRL---HG 291 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~a~~~---~~ 291 (480)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ +..++ ...|..+...+.. .|
T Consensus 352 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999988541 335778889999999999999999999887 22232 3488899999999 99
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 292 NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987753
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.3e-20 Score=184.35 Aligned_cols=329 Identities=9% Similarity=-0.030 Sum_probs=274.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMP--QRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQ 84 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 84 (480)
...+-.+...|.+.|++++|...|+++. .|+..+|..+..+|.+.|++++|...|+++.+ | +..+|..+..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999986 48899999999999999999999999998764 4 56799999999999
Q ss_pred cCChHHHHHHHHHHHHCCCC------------------------------------------------------------
Q 038395 85 HGLANEALVLFRRMLAEKVE------------------------------------------------------------ 104 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~~------------------------------------------------------------ 104 (480)
.|++++|+..|+++...+..
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999776421
Q ss_pred -----------------CC-HHHHHHHHHHHHc---cCChHHHHHHHHHHHH-----hCCC-------CCchhHHHHHHH
Q 038395 105 -----------------PN-EVTAVAVLSACGQ---IGALESGRWIHSYIEN-----SRNI-------KVNVQVGTALIN 151 (480)
Q Consensus 105 -----------------pd-~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~li~ 151 (480)
|+ ...+......+.. .|+++.|...++.+.+ .... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11 2223333333333 7999999999999987 2011 334667888999
Q ss_pred HHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
.|...|++++|...|+++.+ |+...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998753 447889999999999999999999999998753 335678888999999999999999
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~ 307 (480)
..++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 999999853 2335778889999999999999999999987 3333 57788999999999999999999999999988
Q ss_pred CCCch------hHHHHHHHHHH---cCChhHHHHHHHHHHhCC
Q 038395 308 LANSG------TYVLLSNIYAA---IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 308 ~~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~ 341 (480)
|.++. ++..++.+|.. .|++++|...++++.+..
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 87654 89999999999 999999999999987753
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.6e-18 Score=165.31 Aligned_cols=301 Identities=12% Similarity=0.052 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 83 (480)
+..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+ | +...|..+...|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44555666666666666666666666532 2445566666666666666666666666542 2 4455666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH
Q 038395 84 QHGLANEALVLFRRMLAEKVEP----NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 159 (480)
..|++++|++.|++..+. .| +...+..+.... ....+..+...|...|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~------------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD------------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH------------------------HHHHHHHHHHHHHHccCH
Confidence 666666666666666553 33 222222221000 000011123455555555
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 160 KDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 160 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
++|.+.|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555432 244455555555555566666666555555432 2234455555555555566666666555555
Q ss_pred hhcCCcCCc-cHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----hHHHHHHHHHHhcCChhHHH
Q 038395 237 DEYAIEPKV-EHYG------------CMVNLLSRAGQVEEAYKLVMDM-KIEPD-S----VLWGTLLGACRLHGNIALGE 297 (480)
Q Consensus 237 ~~~~~~p~~-~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~li~a~~~~~~~~~a~ 297 (480)
+. .|+. ..+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 32 2221 1111 2255567777777777777776 22333 2 22445666777778888888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 298 KIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..++++++..|+++.++..+..+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8888888877777777788888888888888888888777654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=6.4e-19 Score=168.10 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=188.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----CHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K----DVVCWNV 77 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~----~~~~~~~ 77 (480)
+.+..++..+...|...|++++|...|+++.+ | +..+|..+...|.+.|++++|...|++..+ | +...|..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 34678899999999999999999999998763 3 668899999999999999999999999865 3 2334444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
+...+. ...+..+...+...|++++|...++.+.+. .+.+..++..+...|.+.|
T Consensus 114 l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 114 LVKADE-----------------------MQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCC
Confidence 421100 001122223334444444444444444432 2233444444445555555
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH------------HHHHHHHHHc
Q 038395 158 SLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DIT------------FIGLLSACAH 221 (480)
Q Consensus 158 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t------------~~~ll~a~~~ 221 (480)
++++|...|+++.+ .+..+|..+...|...|++++|...|++..+.. |+ ... ...+...+..
T Consensus 169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544432 234455555555555566666666665555432 22 111 1223556778
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCc-----cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKV-----EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
.|++++|...++.+.+. .|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+++
T Consensus 247 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp TTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888754 3442 23445678888899999999988887 3344 6788889999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
+|...++++++..|++...+..+..++..
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999988777777666544
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.1e-18 Score=176.52 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=188.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYA 185 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 185 (480)
++..+...+...|++++|...+..+.+. .|+...+..+...|...|++++|.+.|+++.+ .+..+|..+...|.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 4555566677888999999999999875 45577888889999999999999999988753 46788999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
..|++++|++.|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999998854 2245778888899999999999999999988542 334678889999999999999999
Q ss_pred HHHHhC----CCCC----CHhHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 266 KLVMDM----KIEP----DSVLWGTLLGACRLH----------GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 266 ~~~~~m----~~~p----~~~~~~~li~a~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+.++++ +..+ ....+..+...+... |++++|...++++++..|.++.++..+..+|...|++
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 999887 1111 223344555677777 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038395 328 DGVARVRTLMKEKG 341 (480)
Q Consensus 328 ~~a~~~~~~m~~~~ 341 (480)
++|.+.+++..+..
T Consensus 479 ~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 DEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987754
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.5e-18 Score=158.84 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=210.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038395 39 RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLS 115 (480)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 115 (480)
.+...+..+...+...|++++|.++|+++.+ | +...+..++..+.+.|++++|+.+|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3555667777777777888888888877653 2 44566667777778888888888888877742 335667777777
Q ss_pred HHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH
Q 038395 116 ACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGK 191 (480)
Q Consensus 116 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 191 (480)
.+...| ++++|...++.+.+. .+.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 777788 788888888887753 344566777788888888888888888877653 34566777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcC-------CcCCccHHHHHHHHHHHcCCHHHH
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYA-------IEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
+|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887653 33566777788888888888888888887764321 123356788888888888888888
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH-HHcCCh
Q 038395 265 YKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY-AAIGNW 327 (480)
Q Consensus 265 ~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 327 (480)
.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888877 2233 5677888888888899999999999998888888888888888877 444543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.3e-18 Score=164.21 Aligned_cols=280 Identities=11% Similarity=-0.040 Sum_probs=220.4
Q ss_pred HHhcCCHHHHHH-HHhhcCC--C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038395 51 YAKQGEVAAARV-LFDDMEE--K-----DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA 122 (480)
Q Consensus 51 ~~~~g~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 122 (480)
+.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 8876543 1 34568888889999999999999999998863 4467788888888999999
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHH---------------HHHHH
Q 038395 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNS---------------MIVGY 184 (480)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~ 184 (480)
+++|...++.+.+. .+.+..++..+...|...|++++|.+.|+++... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998875 3557788888999999999999999999877542 2222221 23334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998854221 4788899999999999999999999998854 13346789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHcCChhHH
Q 038395 264 AYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-----------SGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 264 A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 330 (480)
|.+.|+++ ...| +..+|..+...+...|++++|...++++++..|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 57889999999999999999999999999988776 77899999999999999999
Q ss_pred HHHHH
Q 038395 331 ARVRT 335 (480)
Q Consensus 331 ~~~~~ 335 (480)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-17 Score=155.04 Aligned_cols=265 Identities=11% Similarity=0.036 Sum_probs=228.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 70 KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 70 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+.+. .+.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 456678888899999999999999999998763 335556777888889999999999999999985 45577889999
Q ss_pred HHHHHhCC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 150 INMYSKCG-SLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 150 i~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
...|...| ++++|.+.|++... .+...|..+...|...|++++|++.|++..+... .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998765 3677899999999999999999999999988642 2456677788999999999
Q ss_pred HHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHhHHHHHHHHHHhcCChh
Q 038395 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI----------EPDSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~li~a~~~~~~~~ 294 (480)
++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999843 2344678899999999999999999999887 11 234678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...++++++..|.++.++..+..+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999877543
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.1e-19 Score=171.03 Aligned_cols=282 Identities=10% Similarity=0.048 Sum_probs=136.8
Q ss_pred HhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038395 21 ARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLA 100 (480)
Q Consensus 21 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 100 (480)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|...|..++.++.+.|++++|++.++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 37788999999999997664 9999999999999999999999765 5777999999999999999999997777666
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHH
Q 038395 101 EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM 180 (480)
Q Consensus 101 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 180 (480)
. .+++.+.+.++.+|.+.|+++++.++++ .|+..+++.+.+.|...|.+++|...|..+ ..|..|
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ---------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 3 5567889999999999999999887773 367779999999999999999999999988 489999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 181 IVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
+.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCC
Confidence 99999999999999999998 27899999999999999999996544432 2334446679999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHcCChhHHH
Q 038395 261 VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH--GNIALGEKIAEYLISQNL-----ANSGTYVLLSNIYAAIGNWDGVA 331 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~ 331 (480)
+++|..+++.. +..+ ....|+-|.-++++. +++.+..+.|..-+...| .++..|.-+...|.+.++++.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999887 6554 477888887777765 344445555443333444 46678999999999999999988
Q ss_pred HH
Q 038395 332 RV 333 (480)
Q Consensus 332 ~~ 333 (480)
.+
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6e-18 Score=162.41 Aligned_cols=261 Identities=11% Similarity=-0.063 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+. .+.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 45568888888899999999999999888753 446778888888888999999999999988875 345677888889
Q ss_pred HHHHhCCCHHHHHHHHHhcCCC---C----------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVNDK---D----------VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITFIGLL 216 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~~---~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll 216 (480)
..|.+.|++++|...|+++.+. + ...+..+...+...|++++|++.|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999887642 1 223344578889999999999999999886422 2578899999
Q ss_pred HHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 217 SACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 217 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
..+...|++++|...|+.+.+.. +.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999988541 345778999999999999999999999987 4445 4888999999999999999
Q ss_pred HHHHHHHHHHHcCCC------------CchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLA------------NSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
+|...++++++..|. +...+..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999997765 356889999999999999998877643
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=1e-16 Score=162.00 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=250.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYA 83 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 83 (480)
...+..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|++.|+++.+ | +..+|..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45678888999999999999999998763 4678899999999999999999999999764 3 6778999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----CCCCchh--------------
Q 038395 84 QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR-----NIKVNVQ-------------- 144 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~-------------- 144 (480)
..|++++|++.|+.+ . ..|+... ..+..+...+....+...++.+.... ...|+..
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999633 3 2333221 12233344445566777776664310 0111111
Q ss_pred ----------------HHHHHHHHHHhC--------CCHHHHHHHHHhcCCC---C-------hHHHHHHHHHHHhcCCh
Q 038395 145 ----------------VGTALINMYSKC--------GSLKDARLVFDRVNDK---D-------VVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 145 ----------------~~~~li~~y~~~--------g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~ 190 (480)
....+...|... |++++|..+|+++.+. + ..+|..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 233333333322 4789999999988753 2 23577777888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 191 KDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++|+..|++..+. .|+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.+++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999885 5667888889999999999999999999998542 33477899999999999999999999998
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 271 M-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 271 m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
. ...| +...|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.++++.+..
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 8 3334 467899999999999999999999999999999999999999999999999999999999987654
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=6.6e-16 Score=143.20 Aligned_cols=269 Identities=9% Similarity=-0.036 Sum_probs=205.6
Q ss_pred HHhcCCHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 038395 51 YAKQGEVAAARVLFDDMEEKD----VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 126 (480)
....|++..|+..++.....+ ....-.+..+|...|++++|+..++. . -+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 445678888888877765432 22445567788888888888876644 1 355666777777788888888888
Q ss_pred HHHHHHHHHhCCC-CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038395 127 RWIHSYIENSRNI-KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL 205 (480)
Q Consensus 127 ~~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 205 (480)
.+.++.+... +. +.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 85 VAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 8888887765 53 44666777788899999999999999998 5678899999999999999999999999998863
Q ss_pred CCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHH
Q 038395 206 KPSDITF---IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLW 280 (480)
Q Consensus 206 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 280 (480)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.|++. ...| ++.+|
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 554321 22334445669999999999999965 3456788999999999999999999999997 4445 57889
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 281 GTLLGACRLHGNIAL-GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 281 ~~li~a~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..++..+...|+.++ +.++++++++..|+++.+ .+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 999999999999865 678999999999998744 34455556666655433
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=8e-19 Score=167.13 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=118.1
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 038395 53 KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSY 132 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 132 (480)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6889999999999997664 999999999999999999999965 36888999999999999999999998888
Q ss_pred HHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038395 133 IENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212 (480)
Q Consensus 133 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 212 (480)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 7763 45578899999999999999999988864 77789999999999999999999999977 378
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 038395 213 IGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGN 292 (480)
Q Consensus 213 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~ 292 (480)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 99999999999999999999877 25789999999999999999997777665544543 4568899999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc--CChhHHHHHH
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAI--GNWDGVARVR 334 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 334 (480)
+++|..+++..+.+++.....|.-|..+|++- ++..+..+.|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999988889999998888876 3344444443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1e-16 Score=153.71 Aligned_cols=275 Identities=9% Similarity=0.020 Sum_probs=203.3
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHccCChHHHHHHHH
Q 038395 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV-LFRRMLAEKV-EP--NEVTAVAVLSACGQIGALESGRWIHS 131 (480)
Q Consensus 56 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--d~~t~~~ll~~~~~~~~~~~a~~~~~ 131 (480)
.++.+...|+.+...+.. ++...|++++|++ .|++...... .| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3445688999998 8887654311 11 34567788899999999999999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038395 132 YIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 132 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 208 (480)
.+.+. .+.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.......
T Consensus 89 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 165 (368)
T 1fch_A 89 AAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY- 165 (368)
T ss_dssp HHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 99974 466788999999999999999999999998753 478899999999999999999999999998854221
Q ss_pred HHHHH-H--------------HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038395 209 DITFI-G--------------LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K 272 (480)
Q Consensus 209 ~~t~~-~--------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 272 (480)
...+. . .+..+...|++++|...++.+.+...-.++..++..+...|.+.|++++|...++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 1 233344889999999999999864222224778899999999999999999999987 3
Q ss_pred CCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 273 IEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 273 ~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..| +..+|..+...+...|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344 57899999999999999999999999999999999999999999999999999999999998764
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=2e-16 Score=148.79 Aligned_cols=271 Identities=10% Similarity=-0.010 Sum_probs=177.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ 119 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~ 119 (480)
.|..+...+.+.|++++|..+|+++.+ .+...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344555555555555555555555432 234455555555555555555555555555431 2234445555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHH-HH-HHHhcCChHHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSM-IV-GYAMHGFGKDALQLF 197 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l-i~-~~~~~g~~~~A~~l~ 197 (480)
.|++++|...++.+.+. .+.+...+..+.... ++......+ .. .+...|++++|.+.+
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 55555555555555442 111111111110000 000011111 22 366778889999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 038395 198 NEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP- 275 (480)
Q Consensus 198 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 275 (480)
+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988754 336778888888999999999999999988853 1334677888999999999999999999887 3334
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------------CchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------------NSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
+..+|..+...+...|++++|...++++++..|. ++.++..+..+|...|++++|..++++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5788999999999999999999999999999888 6778999999999999999999988643
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=6.5e-17 Score=155.14 Aligned_cols=231 Identities=9% Similarity=-0.005 Sum_probs=194.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIV 182 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 182 (480)
+...+..+...+.+.|++++|..+++.+.+. .+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4456888899999999999999999999985 466788999999999999999999999998764 46789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRLKPS-----------DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM 251 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 251 (480)
.|...|++++|++.|+++.+.. |+ ...+..+...+...|++++|..+++.+.+...-.++...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998742 32 2233445778899999999999999998653222257889999
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 252 VNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
...|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|...++++++..|.++.++..+..+|...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 3334 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038395 330 VARVRTLMKEK 340 (480)
Q Consensus 330 a~~~~~~m~~~ 340 (480)
|...+++..+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=175.09 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=112.4
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVN-------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT 211 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 211 (480)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 212 FIGLLSACAHAGL-VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 212 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
|+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++.+.++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999987 47889999999965 99999999999998877775555554443333
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=173.06 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038395 42 VSLTTMLTCYAKQGEVAAARVLFDDME-------EKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVL 114 (480)
Q Consensus 42 ~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 114 (480)
.+||+||.+|+++|++++|.++|+.|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 589999999999999999999998764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcC
Q 038395 115 SACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-----DVVVWNSMIVGYAMHG 188 (480)
Q Consensus 115 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g 188 (480)
.++++.|.. +.|.+++++|.+. |+.||..+|+++++.+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 7899999999999 99999999999998887765555555554433321 1334444556666554
Q ss_pred C---------hHHHHHHHHHH
Q 038395 189 F---------GKDALQLFNEM 200 (480)
Q Consensus 189 ~---------~~~A~~l~~~m 200 (480)
. .++-.++|++-
T Consensus 287 ~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 287 RVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCCCSSCHHHHHHHHHHH
T ss_pred CCcCccccCCHHHHHHHHHHH
Confidence 2 24555566543
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=4.3e-15 Score=147.63 Aligned_cols=334 Identities=12% Similarity=-0.018 Sum_probs=227.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC-----------CC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMP-----------QR-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE------- 69 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------- 69 (480)
....||.|...|...|+.++|++.|++.. .+ ..++|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45689999999999999999999988652 12 357899999999999999999998887642
Q ss_pred ---C-CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHccCChHHHHHHHHHHHHhCCC
Q 038395 70 ---K-DVVCWNVMIDGYAQH--GLANEALVLFRRMLAEKVEPN-EVTAVAVLSA---CGQIGALESGRWIHSYIENSRNI 139 (480)
Q Consensus 70 ---~-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 139 (480)
+ ...+++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.++...+. .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--N 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--C
Confidence 1 345677666666654 5699999999999885 454 4445444444 34567778888989888875 3
Q ss_pred CCchhHHHHHHHHHHhC----CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHH
Q 038395 140 KVNVQVGTALINMYSKC----GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS-DIT 211 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 211 (480)
+.+..++..+...+... |++++|.+.|++... .+..+|..+...|...|++++|++.|++..+. .|+ ..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 44566666666555544 678899999987643 46778999999999999999999999999875 343 455
Q ss_pred HHHHHHHHHcc-------------------CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038395 212 FIGLLSACAHA-------------------GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM- 271 (480)
Q Consensus 212 ~~~ll~a~~~~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 271 (480)
+..+..++... +..++|...++...+.. +.+...+..+...|...|++++|.+.|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 55554444321 33567777777776431 334677889999999999999999999987
Q ss_pred CCCCCHhH----HHHHHH-HHHhcCChhHHHHHHHHHHHc------------------------CCCCchhHHHHHHHHH
Q 038395 272 KIEPDSVL----WGTLLG-ACRLHGNIALGEKIAEYLISQ------------------------NLANSGTYVLLSNIYA 322 (480)
Q Consensus 272 ~~~p~~~~----~~~li~-a~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~ 322 (480)
...|+... +..+.. .....|+.++|...++++++. +|.++.+|..|..+|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44454332 223322 234668888888888777654 5677789999999999
Q ss_pred HcCChhHHHHHHHHHHhCCCccCCceee
Q 038395 323 AIGNWDGVARVRTLMKEKGVQKEPGCSS 350 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 350 (480)
..|++++|.+.|++..+.+-......+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999998876543334444
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.3e-15 Score=141.14 Aligned_cols=247 Identities=13% Similarity=0.081 Sum_probs=203.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKVEPNE--VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
|.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCC
Confidence 3445678999999999887654 34543 3556678899999999999875533 3466788889999999999
Q ss_pred CCHHHHHHHHHhcC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038395 157 GSLKDARLVFDRVN----DK-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRF 231 (480)
Q Consensus 157 g~~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 231 (480)
|+.++|.+.|+++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 566788888999999999999999987 45778888999999999999999999
Q ss_pred HHHhhhhcCCcCCccHH---HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 232 FNTMKDEYAIEPKVEHY---GCMVNLLSRAGQVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 232 ~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
|+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+.++..|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999854 4664321 22334455569999999999998 22346889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChhH-HHHHHHHHHhCC
Q 038395 307 NLANSGTYVLLSNIYAAIGNWDG-VARVRTLMKEKG 341 (480)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 341 (480)
+|+++.++..++..+...|+.++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578888887654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.3e-15 Score=143.30 Aligned_cols=254 Identities=12% Similarity=0.040 Sum_probs=182.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ---RSLVSLTTMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGY 82 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 82 (480)
+...+..+...+.+.|++++|..+|+++.+ .+..+|..+...+.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 445567788899999999999999998753 3667899999999999999999999998764 3678899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH--------------HH-HHHccCChHHHHHHHHHHHHhCCCCCchhHH
Q 038395 83 AQHGLANEALVLFRRMLAEKVEPNE-VTAVAV--------------LS-ACGQIGALESGRWIHSYIENSRNIKVNVQVG 146 (480)
Q Consensus 83 ~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (480)
...|++++|++.|+++.... |+. ..+..+ .. .+...|++++|...+..+.+. .+.+..++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 175 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLH 175 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHH
Confidence 99999999999999998853 332 222222 11 256667778888888877764 34466677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038395 147 TALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 223 (480)
..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777776542 355667777777777777777777777776642 224556666677777777
Q ss_pred CHHHHHHHHHHhhhhcCCcCC-------------ccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 224 LVNEGRRFFNTMKDEYAIEPK-------------VEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++++|...++.+.+. .|+ ...+..+..+|.+.|++++|..++++
T Consensus 255 ~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777777777766632 232 44555566666666666666666554
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.1e-13 Score=138.21 Aligned_cols=303 Identities=10% Similarity=-0.020 Sum_probs=154.0
Q ss_pred cCChHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH----cCChHHHH
Q 038395 23 GGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAK----QGEVAAARVLFDDMEEK-DVVCWNVMIDGYAQ----HGLANEAL 92 (480)
Q Consensus 23 ~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~ 92 (480)
.++.++|...|++..+ .+..++..|...|.. .+++++|...|++..++ +..++..|...|.. .+++++|+
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4444444444444322 233334444444443 34444444444443322 33344444444444 34444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh----CCCHHHHHH
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK----CGSLKDARL 164 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~ 164 (480)
+.|++..+.| +...+..+...+.. .++.++|...+....+. + +...+..+..+|.. .+++++|.+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4444444432 33344444444443 44555555555544443 2 23344444444443 455555555
Q ss_pred HHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHH
Q 038395 165 VFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-----GLVNEGRRFFNT 234 (480)
Q Consensus 165 ~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~ 234 (480)
.|++..+ .+...+..+...|.. .++.++|++.|++..+.| +...+..+...+... ++.++|...|+.
T Consensus 245 ~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 245 LFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 5554433 244444445555554 555666666666555443 233444444444444 566666666666
Q ss_pred hhhhcCCcCCccHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038395 235 MKDEYAIEPKVEHYGCMVNLLSRAG---QVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQN 307 (480)
Q Consensus 235 m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~ 307 (480)
..+. .+...+..|...|.+.| ++++|.++|++.-...++..+..|...|.. .+++++|...++++.+.+
T Consensus 322 a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 322 SAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 5532 12344555555555544 566666666665112355666666666666 667777777777766654
Q ss_pred CCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 038395 308 LANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 308 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 341 (480)
++.++..|..+|.. .++.++|...|++..+.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 34566667777766 677777777777766655
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=1.8e-13 Score=136.78 Aligned_cols=319 Identities=13% Similarity=0.011 Sum_probs=267.0
Q ss_pred CChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CHHHHHH
Q 038395 8 KDLYVSTSLVDLYAR----GGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAK----QGEVAAARVLFDDMEEK-DVVCWNV 77 (480)
Q Consensus 8 ~d~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~ 77 (480)
.|+..+..|...|.. .++++.|...|++..+ .+..++..|...|.. .++.++|.+.|++..++ +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 366777888888888 8999999999998654 477888999999998 99999999999997754 6778888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038395 78 MIDGYAQ----HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVGTAL 149 (480)
Q Consensus 78 li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 149 (480)
|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.+.++...+. + +...+..|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~~~L 189 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSCNQL 189 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHH
Confidence 9999998 889999999999998876 56777778888876 78999999999999876 4 67788889
Q ss_pred HHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 150 INMYSK----CGSLKDARLVFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 150 i~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+.+|++..+.| +...+..+...+.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 999998 8999999999998765 467788888888886 789999999999998764 4556666666777
Q ss_pred c----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc-----CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 038395 221 H----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA-----GQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 221 ~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~ 291 (480)
. .++.++|..+|+...+. -+...+..|...|... +++++|..+|++.-...+...+..|...+...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 6 89999999999998743 2455777788888887 899999999998822245677788888887756
Q ss_pred ---ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 292 ---NIALGEKIAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 292 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
+.++|...++++.+. .++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 889999999999987 456789999999999 8999999999999988763
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=5.6e-14 Score=141.87 Aligned_cols=329 Identities=10% Similarity=0.012 Sum_probs=234.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDG 81 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 81 (480)
+-|..+|..++. +.+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 346778999998 4788999999999999865 4 556899999999999999999999999875 777788877753
Q ss_pred -HHHcCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHhCCCCCchhH
Q 038395 82 -YAQHGLANEALV----LFRRMLAE-KVEP-NEVTAVAVLSACGQ---------IGALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 82 -~~~~g~~~~A~~----~~~~m~~~-g~~p-d~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
....|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|+...+. ........
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHH
Confidence 345577766654 66666542 5444 34555555554433 56777777777777653 21111122
Q ss_pred HHHHHHHH-------------HhCCCHH----------------------------------------------------
Q 038395 146 GTALINMY-------------SKCGSLK---------------------------------------------------- 160 (480)
Q Consensus 146 ~~~li~~y-------------~~~g~~~---------------------------------------------------- 160 (480)
|....... .+.++++
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22111100 0011122
Q ss_pred --------HHHHHHHhcCC---CChHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCC-CHHHHHH
Q 038395 161 --------DARLVFDRVND---KDVVVWNSMIVGYAM-------HGFGK-------DALQLFNEMCRIRLKP-SDITFIG 214 (480)
Q Consensus 161 --------~A~~~f~~m~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p-~~~t~~~ 214 (480)
.|..+|++... .+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 33344444432 255677777777765 68876 899999988752 234 4677888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCc--cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH-HHh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKV--EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA-CRL 289 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a-~~~ 289 (480)
++..+.+.|++++|..+|+.+.+ +.|+. ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 88888999999999999999985 35543 47888888888999999999999988 43443 2333222222 346
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|+.+.|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999998764
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=2.7e-13 Score=136.85 Aligned_cols=328 Identities=10% Similarity=0.049 Sum_probs=238.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHH-HhcCCHHHHHH----HHhhcC-----C-CCH
Q 038395 6 LDKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCY-AKQGEVAAARV----LFDDME-----E-KDV 72 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~-~~~g~~~~A~~----~f~~~~-----~-~~~ 72 (480)
.+.+...|..++..+.+.|+++.|+.+|++... |++..|...+... ...|+.+.|.+ +|+... . ++.
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 345677899999999999999999999999864 7777787777533 34566665554 666542 1 356
Q ss_pred HHHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------HccCCh-------
Q 038395 73 VCWNVMIDGYAQ---------HGLANEALVLFRRMLAEKVEPNEVTAVAVLSAC-------------GQIGAL------- 123 (480)
Q Consensus 73 ~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~-------------~~~~~~------- 123 (480)
..|...+....+ .|++++|..+|++.++....+....|....... ...+++
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~ 201 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHH
Confidence 678877776554 678888888888887621111112222111100 000111
Q ss_pred -----------------------------------------------------HHHHHHHHHHHHhCCCCCchhHHHHHH
Q 038395 124 -----------------------------------------------------ESGRWIHSYIENSRNIKVNVQVGTALI 150 (480)
Q Consensus 124 -----------------------------------------------------~~a~~~~~~~~~~~~~~~~~~~~~~li 150 (480)
+.+..++++.... .+.+..+|..++
T Consensus 202 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~ 279 (530)
T 2ooe_A 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAA 279 (530)
T ss_dssp HHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 1344455555542 344667777777
Q ss_pred HHHHh-------CCCHH-------HHHHHHHhcCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H
Q 038395 151 NMYSK-------CGSLK-------DARLVFDRVND---K-DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--I 210 (480)
Q Consensus 151 ~~y~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ 210 (480)
..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. .
T Consensus 280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 357 (530)
T 2ooe_A 280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTL 357 (530)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHH
T ss_pred HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchH
Confidence 77775 79987 99999998764 3 5789999999999999999999999999984 5543 4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNL-LSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGA 286 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a 286 (480)
.|...+..+.+.|+.++|..+|+...+. .|+ ...|...... +...|++++|..+|++. ...| ++..|..++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 7888888888999999999999999853 343 2333322222 34689999999999987 3334 58899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSG----TYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|+.+.|..+|++++...|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998776554 6777788888999999999999988764
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.5e-14 Score=127.15 Aligned_cols=225 Identities=10% Similarity=-0.020 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+...|++++|++.|++..+.. ++...+..+..++...|++++|...+..+.+. .|+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~--------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ---GREM--------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHT---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---Cccc---------
Confidence 345555556666666666666666655544 44555555555555555555555555554432 0100
Q ss_pred HHhCCCHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038395 153 YSKCGSLKDARLVFDRVNDKD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEG 228 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 228 (480)
.++ ..+|..+...|...|++++|++.|++.... .|+. ..+...|++++|
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHH
Confidence 001 345666666666777777777777776663 3442 234555677777
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
...++.+... -+.+...+..+...|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++.
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777642 1223556777777888888888888888777 2233 5777888888888888888999988888888
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 307 NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.|+++.++..+..+|...|++++|.+.+++..+.
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888888888898999999998888887654
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.4e-14 Score=128.55 Aligned_cols=220 Identities=10% Similarity=-0.010 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 038395 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--EPN----EVTAVA 112 (480)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd----~~t~~~ 112 (480)
...|..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35788899999999999999999988643 6778999999999999999999999999877421 122 467777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCC
Q 038395 113 VLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGF 189 (480)
Q Consensus 113 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~ 189 (480)
+...+...|++++|...+..+.+. .|+. ..+.+.|++++|...++++... +...|..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 777888888888888888888765 2332 2344445555555555554322 23344444444555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
+++|+..|++..+.. +.+...+..+...|.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-------------------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555555444421 1223444555555555555555555555
Q ss_pred hC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038395 270 DM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQN 307 (480)
Q Consensus 270 ~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~ 307 (480)
+. ...| +...|..+...+...|++++|...++++++..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 54 2223 35566666667777777777777777776665
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=4.5e-14 Score=129.23 Aligned_cols=241 Identities=10% Similarity=-0.067 Sum_probs=175.3
Q ss_pred HcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 84 QHGLANEALVLFRRMLAEKVE--P-NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~--p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...++.+.+. .+.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 346677788887777765321 1 3456667777777778888888888777764 3446677778888888888888
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 161 DARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 161 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
+|.+.|+++.+ .+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|+.++|...+.....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877653 35678888888888899999999999888874 45544444555556677899999999987775
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
. .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++..|.+.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3 23344444 4777777888888999888877 33332 57888899999999999999999999999998775
Q ss_pred hhHHHHHHHHHHcCChhHHHHHH
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
..+ ..++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 444 55677888888887665
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=5.6e-14 Score=124.28 Aligned_cols=195 Identities=13% Similarity=0.032 Sum_probs=146.5
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLL 216 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 216 (480)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777777788888888888888877654 356777778888888888888888888887753 22456677777
Q ss_pred HHHHcc-----------CCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHH
Q 038395 217 SACAHA-----------GLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTL 283 (480)
Q Consensus 217 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 283 (480)
.++... |++++|...++...+. .|+ ...+..+...|...|++++|...|++. .+..++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 777777 9999999999998853 454 677888889999999999999999887 222678899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..++...|++++|...++++++..|+++.++..+..++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=3.7e-12 Score=135.07 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=227.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHH
Q 038395 13 STSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEAL 92 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 92 (480)
..-+...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 44456777788999999999998752 2222333433 6788999999998775 4578889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 038395 93 VLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK 172 (480)
Q Consensus 93 ~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 172 (480)
+.|.+. -|...|..++.+|.+.|+++++.+++....+. .+++.+.+.++..|++.+++++..... ..+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI---~~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI---NGP 1193 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH---hCC
Confidence 999663 47788889999999999999999999988865 345445556999999999998644443 455
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
+...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.++... +..+|..+-
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHH
Confidence 6777888999999999999999999985 478999999999999999999888763 357888888
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc--CChhHH
Q 038395 253 NLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI--GNWDGV 330 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a 330 (480)
.++...|++..|......+ ..++..+..++..|...|.+++|..+++..+.+++.+...|.-|...|++. ++..++
T Consensus 1258 ~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 8888999999998877653 345666778899999999999999999999999988888887777777764 334444
Q ss_pred HHHHH
Q 038395 331 ARVRT 335 (480)
Q Consensus 331 ~~~~~ 335 (480)
.+.|.
T Consensus 1336 lk~f~ 1340 (1630)
T 1xi4_A 1336 LELFW 1340 (1630)
T ss_pred HHHHH
Confidence 44443
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=3.1e-13 Score=123.49 Aligned_cols=250 Identities=9% Similarity=-0.044 Sum_probs=133.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN--EVTAVAVLSACG 118 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~~~~ 118 (480)
+......+.+.|++++|+..|++..+ | +...|..+...|.+.|++++|++.|++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 44455556666666666666666543 2 344666666666666666666666666665321121 223555666666
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQ 195 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (480)
..|++++|...++...+. .+.+..++..+...|...|++++|.+.|++..+ .+...|..+...+...+++++|++
T Consensus 86 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666653 233445566666666666666666666665543 234444444412222335555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038395 196 LFNEMCRIRLKPSDITFIGLLSACAHAGL---VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 196 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 272 (480)
.|++..+.. +.+...+..+..++...|+ .++|...++.+.+...-.|+.. -
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~------------------------ 217 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K------------------------ 217 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H------------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h------------------------
Confidence 555555431 1112333333333333333 3333333333332111011100 0
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 273 IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 273 ~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
.....+|..+...+...|++++|...++++++.+|+++.+...+.....
T Consensus 218 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 218 -DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 0012466777788888899999999999999999988776665554443
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3.6e-12 Score=116.70 Aligned_cols=225 Identities=12% Similarity=-0.067 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCCchhHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQ----IGALESGRWIHSYIENSRNIKVNVQVG 146 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 146 (480)
+..++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...++...+. + +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 4556666666777777777777777776662 244556666666666 77777777777777665 3 55566
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 147 TALINMYSK----CGSLKDARLVFDRVND-KDVVVWNSMIVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 147 ~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
..+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 666667776 7777777777766543 355666667777777 777777777777777654 4455555666
Q ss_pred HHHc----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHH
Q 038395 218 ACAH----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR----AGQVEEAYKLVMDM-KIEPDSVLWGTLLGACR 288 (480)
Q Consensus 218 a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~ 288 (480)
.+.. .++.++|...|+...+. .+...+..+...|.. .+++++|.+.|++. ... +...+..+...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6665 67777777777776642 234556666666766 77777777777665 222 2556666666666
Q ss_pred h----cCChhHHHHHHHHHHHcCCCC
Q 038395 289 L----HGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 289 ~----~~~~~~a~~~~~~~~~~~~~~ 310 (480)
. .+++++|...++++.+.+|++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 6 677777777777777777654
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=7.4e-13 Score=126.98 Aligned_cols=245 Identities=9% Similarity=0.046 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCCchhHHHH
Q 038395 71 DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGA-LESGRWIHSYIENSRNIKVNVQVGTA 148 (480)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 148 (480)
+...|+.+...+.+.|++++|++.|++.++. .| +...|..+..++...|+ +++|...++.+++. .+.+..+|+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 3457888888999999999999999999885 44 56788888888999996 99999999999875 4557888999
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCC
Q 038395 149 LINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH-AGL 224 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~ 224 (480)
+..+|.+.|++++|+..|+++.. .+..+|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999998764 4778999999999999999999999999988642 256788888888888 566
Q ss_pred HHHH-----HHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcC--CHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcC----
Q 038395 225 VNEG-----RRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAG--QVEEAYKLVMDMKIEPD-SVLWGTLLGACRLHG---- 291 (480)
Q Consensus 225 ~~~a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~li~a~~~~~---- 291 (480)
.++| ...++...+. .|+ ...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 4778777743 454 667888888888888 68999999888854554 677888888888864
Q ss_pred ----C-hhHHHHHHHHH-HHcCCCCchhHHHHHHHHHH
Q 038395 292 ----N-IALGEKIAEYL-ISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 292 ----~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 323 (480)
+ .++|..+++++ .+.+|.....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999888888877766544
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.3e-12 Score=117.84 Aligned_cols=205 Identities=12% Similarity=-0.020 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .+.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 3455666666666666666666666655532 223444555555555555555555555555443 1223333333333
Q ss_pred HHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
.|...|++ ++|++.|+++...+..| +...+..+...+...|++++|..
T Consensus 114 ~~~~~g~~-------------------------------~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 114 FLYEQKRY-------------------------------EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HHHHTTCH-------------------------------HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhHH-------------------------------HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444 44444444333311222 22333344444444444444444
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|
T Consensus 163 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 444444220 112344444555555555555555555554 2222 344555555556666666666666666666666
Q ss_pred CCch
Q 038395 309 ANSG 312 (480)
Q Consensus 309 ~~~~ 312 (480)
+++.
T Consensus 241 ~~~~ 244 (252)
T 2ho1_A 241 GSLE 244 (252)
T ss_dssp TSHH
T ss_pred CCHH
Confidence 5543
No 43
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=1.4e-11 Score=130.86 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=224.3
Q ss_pred hcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 22 RGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 22 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
..|++++|.++.++.. +..+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566777777776553 4678999999999999999999999775 57788999999999999999999999988775
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHH
Q 038395 102 KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMI 181 (480)
Q Consensus 102 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 181 (480)
. +++...+.++-+|++.++++....+ .+ .++...+..+.+.|...|++++|..+|... ..|..+.
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~f----I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA 1228 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 1228 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHH----Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHH
Confidence 4 4433344588899999988864444 22 245566778999999999999999999996 4899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCH
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 261 (480)
..|.+.|++++|++.+++. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999976 35689999999999999999998865542 34566778999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHcCChhHHHH
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLH--GNIALGEKIAEYLISQNL-----ANSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
++|..+++.. ++.| ....|+-|..++.+. ++..++.++|..-....| .+...|.-+...|.+.|+++.|..
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999776 5554 356776676666665 445556666665544444 456688999999999999999984
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.4e-12 Score=115.21 Aligned_cols=197 Identities=14% Similarity=0.059 Sum_probs=117.4
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038395 142 NVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218 (480)
Q Consensus 142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 218 (480)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555555556666666665554432 244555666666666666666666666665542 2244555566666
Q ss_pred HHcc-CCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 219 CAHA-GLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 219 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
+... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666654 122232 345556666666666666666666665 2223 3556666666677777777
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 295 LGEKIAEYLISQNL-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 295 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|...++++++..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777666 66666666666666777777777766666543
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.2e-12 Score=118.22 Aligned_cols=197 Identities=8% Similarity=-0.019 Sum_probs=171.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778888889999999999999988753 467889999999999999999999999998764 33677888899999
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHH
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a 296 (480)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999985 23445 3667888899999999999999999987 3334 578899999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 297 EKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
...++++.+..|.+...+..+...|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997754
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=2.1e-12 Score=117.93 Aligned_cols=225 Identities=9% Similarity=-0.039 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----HHHHHHHHH
Q 038395 10 LYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KD----VVCWNVMID 80 (480)
Q Consensus 10 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 80 (480)
....-.....+.+.|++++|...|++..+ | +..+|..+...|.+.|++++|...|++..+ ++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34456677888999999999999998753 3 556899999999999999999999998765 22 335899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHH
Q 038395 81 GYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLK 160 (480)
Q Consensus 81 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 160 (480)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++...+. .+.+..++..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863 346678999999999999999999999998863 4556777777773444456999
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHHccCCHHH
Q 038395 161 DARLVFDRVND---KDVVVWNSMIVGYAMHGF---GKDALQLFNEMCRIR-LKPSD------ITFIGLLSACAHAGLVNE 227 (480)
Q Consensus 161 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 227 (480)
+|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998764 356788888889988888 888999999887642 22332 466677778888888888
Q ss_pred HHHHHHHhhh
Q 038395 228 GRRFFNTMKD 237 (480)
Q Consensus 228 a~~~~~~m~~ 237 (480)
|...|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888874
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=7.4e-13 Score=116.99 Aligned_cols=190 Identities=15% Similarity=0.065 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+. .+.+...+..+...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 344444444555555555555555544431 223344444444445555555555555544442 22233444444444
Q ss_pred HHhC-----------CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038395 153 YSKC-----------GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218 (480)
Q Consensus 153 y~~~-----------g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 218 (480)
|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 4444 555555555544432 234445555555555555555555555555544 344555555555
Q ss_pred HHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 219 CAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
+...|++++|...|+...+. .| +...+..+...+.+.|++++|...+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555432 22 234444455555555555555555443
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=3.9e-13 Score=120.45 Aligned_cols=209 Identities=10% Similarity=0.018 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~----------- 89 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSS----------- 89 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCc-----------
Confidence 344555555555555555555555555431 223444444444444444444444444444432 112
Q ss_pred HHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 90 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 90 --------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33344444444455555555555555554432 223444555555555555555555555
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
+.+.+.. +.+...+..+...|.+.|++++|.+.+++. ... .+..+|..+...+...|++++|...++++++..|++
T Consensus 149 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 5555321 223445555666666666666666666655 222 245666777777777777777777777777777776
Q ss_pred chhHHHHH
Q 038395 311 SGTYVLLS 318 (480)
Q Consensus 311 ~~~~~~l~ 318 (480)
+.++..+.
T Consensus 227 ~~~~~~~~ 234 (243)
T 2q7f_A 227 MLALHAKK 234 (243)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 65555443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=2.6e-12 Score=113.45 Aligned_cols=208 Identities=9% Similarity=-0.067 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPD---------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC----------
Confidence 4456666666666666666666666665532 223445555555555555555555555555543 122
Q ss_pred HHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 229 (480)
+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|.
T Consensus 75 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 75 ---------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 334445555555555 555666666655555222232 345555566666666666666
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE--PDSVLWGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
..++.+.+.. +.+...+..+...|.+.|++++|.+.+++. ... .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 134 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666665321 223555666667777777777777777665 222 34556666667777788888888888888777
Q ss_pred CCCCchhHH
Q 038395 307 NLANSGTYV 315 (480)
Q Consensus 307 ~~~~~~~~~ 315 (480)
.|+++....
T Consensus 212 ~p~~~~~~~ 220 (225)
T 2vq2_A 212 FPYSEELQT 220 (225)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 777765443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.6e-13 Score=122.46 Aligned_cols=237 Identities=8% Similarity=-0.134 Sum_probs=163.7
Q ss_pred cCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 038395 54 QGEVAAARVLFDDMEEK-------DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESG 126 (480)
Q Consensus 54 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a 126 (480)
.|++++|+..|+++.+. +..+|..+...|...|++++|++.|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777776542 35567778888888888888888888877752 33567777788888888888888
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038395 127 RWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIR 204 (480)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 204 (480)
...++.+.+. .+.+..++..+...|.+.|++++|.+.|+++.+ |+...+...+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 8888888764 344567778888888888888888888887753 333333444445566788889998887776652
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh
Q 038395 205 LKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSV 278 (480)
Q Consensus 205 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 278 (480)
+++...+ .++..+...++.++|...+...... .|+ ...+..+...|.+.|++++|...|++. ...|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-
Confidence 3333333 3666677778888888888877632 232 467788888889999999999999887 555643
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIA 300 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~ 300 (480)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 223344666777777776655
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=1.3e-12 Score=126.54 Aligned_cols=265 Identities=13% Similarity=0.020 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCC-CchhH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIHSYIENS---RNIK-VNVQV 145 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~ 145 (480)
.+..+...+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...++...+. .+.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444555555555555555554431 111 123444444455555555555555443321 0111 12334
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGF--------------------GKDALQL 196 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 196 (480)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555556666666666655554432 11 2356666666666666 6666666
Q ss_pred HHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHH
Q 038395 197 FNEMCRI----RLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKL 267 (480)
Q Consensus 197 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 267 (480)
+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6655431 11111 235666667777778888887777776642111121 23567777778888888888877
Q ss_pred HHhC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------chhHHHHHHHHHHcCChhHHHHH
Q 038395 268 VMDM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN------SGTYVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 268 ~~~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 333 (480)
+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..+..+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765 11112 4567777788888888888888888887754321 44677888888888888888888
Q ss_pred HHHHHh
Q 038395 334 RTLMKE 339 (480)
Q Consensus 334 ~~~m~~ 339 (480)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.9e-13 Score=131.12 Aligned_cols=154 Identities=13% Similarity=0.013 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----c
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----V 245 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 245 (480)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4567777777778888888888777654210 112 236677777788888888888888876642111111 4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCc
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNL------ANS 311 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~------~~~ 311 (480)
.++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 56777888888899999998888776 11122 55778888899999999999999999888532 224
Q ss_pred hhHHHHHHHHHHcCChh
Q 038395 312 GTYVLLSNIYAAIGNWD 328 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~ 328 (480)
.++..+...|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 46677888888777664
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=3.5e-13 Score=131.12 Aligned_cols=265 Identities=11% Similarity=-0.007 Sum_probs=168.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhC---C-CCCchhHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE----VTAVAVLSACGQIGALESGRWIHSYIENSR---N-IKVNVQVG 146 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~ 146 (480)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...++...+.. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344455566666666666666665542 1122 245555555666666666666655554320 1 12234455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDK---------DVVVWNSMIVGYAMHGF-----------------GKDALQLFNEM 200 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m 200 (480)
..+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66666666777777776666654321 23456667777777777 77777777665
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 201 CRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 201 ~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+. +-.| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 431 1111 1245666777788888888888888877643111111 226777788888888888888888776
Q ss_pred ----CCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CchhHHHHHHHHHHcCChhHHHHHHHHH
Q 038395 272 ----KIEP----DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------NSGTYVLLSNIYAAIGNWDGVARVRTLM 337 (480)
Q Consensus 272 ----~~~p----~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 337 (480)
+... ...++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 1467778888889999999999999988885432 2347788999999999999999999887
Q ss_pred HhC
Q 038395 338 KEK 340 (480)
Q Consensus 338 ~~~ 340 (480)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=7.6e-13 Score=118.57 Aligned_cols=198 Identities=10% Similarity=0.076 Sum_probs=155.0
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677778888889999999998888754 367788889999999999999999999998763 336778888999
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
.+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998542 345678888999999999999999999987 3333 67889999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999997753
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.2e-12 Score=122.83 Aligned_cols=264 Identities=13% Similarity=0.031 Sum_probs=166.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCC-CchhHHH
Q 038395 76 NVMIDGYAQHGLANEALVLFRRMLAEKVEPN----EVTAVAVLSACGQIGALESGRWIHSYIENSR---NIK-VNVQVGT 147 (480)
Q Consensus 76 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~ 147 (480)
......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+....+.. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334445555566666666665555532 112 2344455555555566666655555543210 111 1244555
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 038395 148 ALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGF--------------------GKDALQLFN 198 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~ 198 (480)
.+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666667777776666665432 11 2356666677777777 777777776
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 199 EMCRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 199 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
+.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65431 1111 1235666777778888888888888877642111111 2367777888888899999888887
Q ss_pred hC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 270 DM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------NSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 270 ~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+. +..++ ..++..+...+...|++++|...++++++..+. ...++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 76 11112 556778888899999999999999998875432 13477789999999999999999999
Q ss_pred HHHhC
Q 038395 336 LMKEK 340 (480)
Q Consensus 336 ~m~~~ 340 (480)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=1.9e-11 Score=111.86 Aligned_cols=224 Identities=11% Similarity=-0.042 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHh----CCCHHHHHHHHHhcCC-CChHHHHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSK----CGSLKDARLVFDRVND-KDVVVWNSM 180 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~l 180 (480)
+..++..+...+...+++++|...++...+. .+...+..+...|.. .+++++|.+.|++..+ .+..++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5667888888899999999999999999873 345678889999999 9999999999998765 477889999
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 181 IVGYAM----HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH----AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 181 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
...|.. .+++++|++.|++..+.+ +...+..+...+.. .++.++|...|+...+. + +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHH
Confidence 999999 999999999999998875 67788888888988 99999999999999853 3 566778888
Q ss_pred HHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-
Q 038395 253 NLLSR----AGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA- 323 (480)
Q Consensus 253 ~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 323 (480)
..|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..+..+..+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 88988 99999999999987212467788889999999 9999999999999999876 5688899999999
Q ss_pred ---cCChhHHHHHHHHHHhCCC
Q 038395 324 ---IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 324 ---~g~~~~a~~~~~~m~~~~~ 342 (480)
.+++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987764
No 57
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.3e-12 Score=127.78 Aligned_cols=301 Identities=12% Similarity=0.003 Sum_probs=199.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----------C-ChhHHHHHHHHHHhcC--CHHHHHHHHhhcCC--C-CH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ----------R-SLVSLTTMLTCYAKQG--EVAAARVLFDDMEE--K-DV 72 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~--~-~~ 72 (480)
...+|+.+...|...|++++|...|++..+ + ...+++.+..++.+.| ++++|+..|++..+ | +.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 356799999999999999999998886531 1 2356666666666654 69999999998764 4 45
Q ss_pred HHHHHHHHH---HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHHhCCCCCchhH
Q 038395 73 VCWNVMIDG---YAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI----GALESGRWIHSYIENSRNIKVNVQV 145 (480)
Q Consensus 73 ~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 145 (480)
..+..+... +...++.++|++.|++..+.. +.+..++..+...+... ++.++|.+.++..... .+.+..+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~ 249 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHH
Confidence 556555544 445688889999999988752 33556666665555544 5678899999998874 4567778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHc
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMH-------------------GFGKDALQLFNEMCRI 203 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~ 203 (480)
+..+...|.+.|++++|...|++..+ .+..+|..+...|... +..++|...|++..+.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 89999999999999999999998764 3556677666655432 2356788888887765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccH----HHHHHH-HHHHcCCHHHHHHHHHhC-CC----
Q 038395 204 RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEH----YGCMVN-LLSRAGQVEEAYKLVMDM-KI---- 273 (480)
Q Consensus 204 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~li~-~~~~~g~~~~A~~~~~~m-~~---- 273 (480)
. +.+..++..+...+...|++++|...|+...+. .|+... +..+.. .+...|+.++|...|++. .+
T Consensus 330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 3 224456777888899999999999999988743 333221 222222 234678899998887664 21
Q ss_pred --------------------CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 274 --------------------EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 274 --------------------~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
.| ++.+|..|...+...|++++|.+.++++++.+|.++.+...
T Consensus 406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 23 46789999999999999999999999999999877665543
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=1.9e-12 Score=127.71 Aligned_cols=310 Identities=12% Similarity=0.058 Sum_probs=207.7
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHhcCCH---HHHHHHHhhcCCCCHHHHHHHHHHHHHcC-----
Q 038395 16 LVDLYARGGDVLSAEKLFATMPQ-RSLVSLTTMLTCYAKQGEV---AAARVLFDDMEEKDVVCWNVMIDGYAQHG----- 86 (480)
Q Consensus 16 ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 86 (480)
+...+.+.|++++|.++|.+..+ .+..++..|...|...|+. ++|...|++..+.+...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56677789999999999998754 3556677777777778888 89999999988777777888887666665
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC----CH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE---SGRWIHSYIENSRNIKVNVQVGTALINMYSKCG----SL 159 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g----~~ 159 (480)
++++|++.|++..+.|.. + .+..+...+...+..+ .+.+.+...... | +......|...|...+ +.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-G---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-T---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcccCH
Confidence 788999999999987643 3 4555666665554433 344444444443 3 3456677778888777 45
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHH
Q 038395 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHG---FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA----GLVNEGRRFF 232 (480)
Q Consensus 160 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~ 232 (480)
+.+..+++.....+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 56666777777777778888888998899 8899999999988876 34555445566666554 7889999999
Q ss_pred HHhhhhcCCcCCccHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNL-L--SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG-----NIALGEKIAEYLI 304 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~-----~~~~a~~~~~~~~ 304 (480)
+... .-++..+..|... | ...+++++|.++|++.-...++..+..|...|. .| ++++|...++++.
T Consensus 241 ~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8876 2345566666666 4 468899999999988722236777777777776 55 8999999998887
Q ss_pred HcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 305 SQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 305 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
+.++.++..|..+|.. ..+.++|...+++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777888888888877 3488999999998887764
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=4.2e-12 Score=121.76 Aligned_cols=227 Identities=12% Similarity=0.076 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC-HHHHHHHHHhcCC---CChHHHHHHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS-LKDARLVFDRVND---KDVVVWNSMIV 182 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~ 182 (480)
...|..+..++...|++++|...++.+++. .+.+..+|+.+...|.+.|+ +++|+..|+++.. .+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 356777888889999999999999999985 45678899999999999997 9999999998864 47889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHH-cCC
Q 038395 183 GYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSR-AGQ 260 (480)
Q Consensus 183 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~ 260 (480)
.+...|++++|+..|+++.+.. +-+...|..+..++...|++++|...++.+.+. .| +...|+.+..+|.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999864 226778889999999999999999999999854 45 47788999999999 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHhHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC------
Q 038395 261 VEEA-----YKLVMDM-KIEP-DSVLWGTLLGACRLHG--NIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG------ 325 (480)
Q Consensus 261 ~~~A-----~~~~~~m-~~~p-~~~~~~~li~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 325 (480)
.++| ++.|++. .+.| +...|..+...+...| ++++|...+.++ +.+|+++..+..|+.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777766 4455 4788999988888887 689999999988 888999889999999999875
Q ss_pred ---ChhHHHHHHHHH-HhC
Q 038395 326 ---NWDGVARVRTLM-KEK 340 (480)
Q Consensus 326 ---~~~~a~~~~~~m-~~~ 340 (480)
..++|.++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 358999999998 543
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=2.6e-12 Score=120.58 Aligned_cols=134 Identities=13% Similarity=0.003 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----c
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----V 245 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 245 (480)
.++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++.......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566666677777777777777776654210 011 235666677777778888888877776532111111 4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNL 308 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~ 308 (480)
..+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...++++++..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 45667777888888888888887766 1111 144677888888999999999999999887654
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=1e-10 Score=109.18 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACG-------QIGAL-------ESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
++|+.+|++.... .+-+...|..+...+. +.|+. ++|..+++...+. -.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 5666777776664 1334555655555543 24664 7777777777752 12334557777777777
Q ss_pred hCCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHH
Q 038395 155 KCGSLKDARLVFDRVND--K-DVV-VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC-AHAGLVNEGR 229 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~ 229 (480)
+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77888888888777654 2 333 777788888888888888888888776532 2333443333222 2368888888
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-K---IEP--DSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877532 224667777778888888888888888777 2 344 3567788888888888888888888888
Q ss_pred HHcCCCCc
Q 038395 304 ISQNLANS 311 (480)
Q Consensus 304 ~~~~~~~~ 311 (480)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88887644
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2.7e-12 Score=124.80 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=201.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHH
Q 038395 42 VSLTTMLTCYAKQGEVAAARVLFDDMEE--K-DV----VCWNVMIDGYAQHGLANEALVLFRRMLAE----KVEP-NEVT 109 (480)
Q Consensus 42 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t 109 (480)
..+..+...+...|++++|...|++..+ | +. ..|..+...|...|++++|++.|++..+. +-.| ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455667778889999999999988764 3 22 47888888999999999999999887653 1122 3456
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC---C-CCCchhHHHHHHHHHHhCCC-----------------HHHHHHHHHh
Q 038395 110 AVAVLSACGQIGALESGRWIHSYIENSR---N-IKVNVQVGTALINMYSKCGS-----------------LKDARLVFDR 168 (480)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~f~~ 168 (480)
+..+...+...|++++|...+....+.. + .+....++..+...|...|+ +++|.+.|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 7778888889999999999888876530 1 12235577888889999999 8888888877
Q ss_pred cCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 169 VND-----K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 169 m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
..+ . ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++.
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 543 1 235788888999999999999999998865311 112 23677888899999999999999998
Q ss_pred hhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 038395 235 MKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEP-DSVLWGTLLGACRLHGNIALGEKIAEY 302 (480)
Q Consensus 235 m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~ 302 (480)
......-.. ....+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 774321111 1456788889999999999999999877 1111 145778888999999999999999999
Q ss_pred HHHcCC
Q 038395 303 LISQNL 308 (480)
Q Consensus 303 ~~~~~~ 308 (480)
+++..+
T Consensus 369 al~~~~ 374 (411)
T 4a1s_A 369 HLQLAX 374 (411)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 988665
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.5e-12 Score=129.21 Aligned_cols=208 Identities=9% Similarity=-0.014 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 123 LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL-KDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 123 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
++.+.+.+..... ..+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555556665553 2344677788888888888888 888888887653 357788999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc--------CC
Q 038395 199 EMCRIRLKPSDITFIGLLSACAHA---------GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA--------GQ 260 (480)
Q Consensus 199 ~m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~ 260 (480)
+..+. .|+...+..+...+... |++++|...|++..+. .| +...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 98874 57778888888889998 9999999999998853 34 477888888999888 99
Q ss_pred HHHHHHHHHhC-CCCC----CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 261 VEEAYKLVMDM-KIEP----DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p----~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+++|.+.|++. ...| +...|..+..++...|++++|...++++++..|+++.++..+..++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988 4455 688999999999999999999999999999999999999999999999999999987654
Q ss_pred HH
Q 038395 336 LM 337 (480)
Q Consensus 336 ~m 337 (480)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3e-11 Score=103.31 Aligned_cols=166 Identities=13% Similarity=0.027 Sum_probs=122.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMV 252 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 252 (480)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777777777777777776643 124556677777777777777777777777643 122345566666
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHH
Q 038395 253 NLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGV 330 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 330 (480)
..+...+++++|.+.+.+. ...| +...+..+...+...|++++|...++++++.+|.++.++..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777788888888877776 3333 4677888888888888888888888888888888888888888888888999998
Q ss_pred HHHHHHHHhCC
Q 038395 331 ARVRTLMKEKG 341 (480)
Q Consensus 331 ~~~~~~m~~~~ 341 (480)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 88888876643
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=1.5e-11 Score=118.62 Aligned_cols=297 Identities=7% Similarity=0.002 Sum_probs=155.3
Q ss_pred ChhHHHHHHHHH--HhcCChHHHHHHHhhCCC--------CChhHHHHHHHHH--HhcCCHHHHH-----------HHHh
Q 038395 9 DLYVSTSLVDLY--ARGGDVLSAEKLFATMPQ--------RSLVSLTTMLTCY--AKQGEVAAAR-----------VLFD 65 (480)
Q Consensus 9 d~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~--~~~g~~~~A~-----------~~f~ 65 (480)
+..+-+.|=..| .+.+++++|..+++++.+ +++..|-.++..- .-.++++.+. +.|+
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 334444444333 467888988888877642 2333333333321 1122333333 4444
Q ss_pred hcCC-C-CHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHH
Q 038395 66 DMEE-K-DVV------CWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPN----EVTAVAVLSACGQIGALESGRWIHSY 132 (480)
Q Consensus 66 ~~~~-~-~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~~ 132 (480)
.+.. + +.. .|......+...|++++|++.|++..+.-. .|| ..++..+...+...|+++.|...+..
T Consensus 89 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 89 EIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4432 1 111 122245566778888888888888765310 122 34666777777778888888877777
Q ss_pred HHHhCCCCC-----chhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 133 IENSRNIKV-----NVQVGTALINMYSKCGSLKDARLVFDRVND-----KD----VVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 133 ~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
..+...-.+ ...+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 665311111 134566666777777777777777665542 11 1356666666666677777776666
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCC---HHHHHHH
Q 038395 199 EMCRI----RL-KPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQ---VEEAYKL 267 (480)
Q Consensus 199 ~m~~~----g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~ 267 (480)
+..+. +. +....++..+...+...|++++|...++...+...-..+ ...+..+...|...|+ +++|..+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 65541 22 222345555666666666666666666655432110111 1123344445555555 5555555
Q ss_pred HHhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 268 VMDMKIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 268 ~~~m~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 329 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555533222 22334444444445555555554444444
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.9e-12 Score=119.15 Aligned_cols=242 Identities=11% Similarity=0.065 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAE-------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS------RN 138 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 138 (480)
..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+..+.+. ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 446667777777777777777777776652 11223345666666667777777777776666543 01
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVND-----------KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---- 203 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 203 (480)
.+....++..+...|...|++++|...|+++.+ ....+|..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 233455677777778888888888777776542 12345666667777777777777777776553
Q ss_pred --CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhc------CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038395 204 --RLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEY------AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIE 274 (480)
Q Consensus 204 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 274 (480)
+..|+ ..++..+...+...|++++|...++.+.+.. ...+.........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---------------------- 244 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA---------------------- 244 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH----------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH----------------------
Confidence 11222 2345556666666777777777766665320 0111111111111
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 275 PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..+..+...+...+.+..+...++......|....++..++.+|.+.|++++|.+.+++..
T Consensus 245 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 245 ---EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111122222333444444455555555555555566666666666666666666666554
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.7e-11 Score=103.64 Aligned_cols=168 Identities=12% Similarity=0.038 Sum_probs=134.1
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLS 217 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 217 (480)
.++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788888888888888888888887653 467788888888888999999998888887753 224556666777
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIAL 295 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~ 295 (480)
.+...++.+.+...+....+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 788889999999988888743 1334667888888999999999999999887 4444 57889999999999999999
Q ss_pred HHHHHHHHHHcCCCCc
Q 038395 296 GEKIAEYLISQNLANS 311 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~ 311 (480)
|...++++++.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999988653
No 68
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=4.8e-11 Score=117.61 Aligned_cols=312 Identities=11% Similarity=-0.017 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhcCCC-CHHHHHHHHHH
Q 038395 11 YVSTSLVDLYARGGDV---LSAEKLFATMPQRSLVSLTTMLTCYAKQG-----EVAAARVLFDDMEEK-DVVCWNVMIDG 81 (480)
Q Consensus 11 ~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~ 81 (480)
..+..|..+|...|+. ++|...|++..+.++.++..|...+...| +.++|...|++..++ +...+..|...
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 115 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAML 115 (452)
T ss_dssp TGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444566667777888 89999999887767777888877665555 788999999987764 45578888888
Q ss_pred HHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH----HHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 82 YAQHGLAN---EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALE----SGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 82 ~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
|...+..+ ++.+.+.+....| +......+...+...+.++ .+..++.... ..++..+..|..+|.
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~-----~~~~~a~~~Lg~~~~ 187 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL-----NTTDICYVELATVYQ 187 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT-----TTCTTHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence 88876644 4555555555544 3445556666677767444 4444444433 234448889999999
Q ss_pred hCC---CHHHHHHHHHhcCC---CChHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--Hc
Q 038395 155 KCG---SLKDARLVFDRVND---KDVVVWNSMIVGYAMH----GFGKDALQLFNEMCRIRLKPSDITFIGLLSA-C--AH 221 (480)
Q Consensus 155 ~~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~ 221 (480)
+.| +.++|.+.|++..+ ++...+..|...|... +++++|++.|++.. .| +...+..+... + ..
T Consensus 188 ~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~ 263 (452)
T 3e4b_A 188 KKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPE 263 (452)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGG
T ss_pred HcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCC
Confidence 999 99999999988754 3455557777777655 79999999999987 43 34455555554 3 56
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCC
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG-----QVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGN 292 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~ 292 (480)
.++.++|..+|+...+. | +...+..|..+|. .| ++++|.++|++.- ..++..+..|...|.. ..+
T Consensus 264 ~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp GCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcC
Confidence 89999999999998853 3 5667777888887 55 9999999999987 6678888888877766 348
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 342 (480)
.++|...+++..+.+. +.+...|..+|.. ..+.++|...++...+.|.
T Consensus 338 ~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999987654 4577888888875 4588999999999988775
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=1.9e-09 Score=103.27 Aligned_cols=264 Identities=14% Similarity=0.014 Sum_probs=164.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHH
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEV----TAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTA 148 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 148 (480)
.+...+...|++++|...+++........+.. ++..+...+...|+++.|...+....+...-..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777766543222221 3444455566677777777777666542000111 223455
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHH
Q 038395 149 LINMYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK--P--SDITFI 213 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 213 (480)
+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66677777887777777765532 1 1234556677778888888888888877653221 1 134566
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHH
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYG-----CMVNLLSRAGQVEEAYKLVMDM-KIEPD-----SVLWGT 282 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ 282 (480)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 677777888888888888887764311111111122 2334467888999998888887 22221 224567
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC------CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLA------NSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...+...|++++|...++++....+. ....+..+..+|...|+.++|...+++..+.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888889999999998888774321 1135667788889999999999988887543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=2.5e-11 Score=117.00 Aligned_cols=285 Identities=8% Similarity=-0.030 Sum_probs=199.9
Q ss_pred HhcCCHHHHHHHHhhcCC--------CCHHHHHHHHHH--HHHcCChHHHH-----------HHHHHHHHCCCCCCHHHH
Q 038395 52 AKQGEVAAARVLFDDMEE--------KDVVCWNVMIDG--YAQHGLANEAL-----------VLFRRMLAEKVEPNEVTA 110 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~pd~~t~ 110 (480)
.+.+++++|..+++++.+ ++...|-.++.. ....+..+.+. +.++.+... +++...+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhH
Confidence 678999999999888642 234444444332 11223333444 666665442 1111222
Q ss_pred H------HHHHHHHccCChHHHHHHHHHHHHhCC-CCC---chhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----C---
Q 038395 111 V------AVLSACGQIGALESGRWIHSYIENSRN-IKV---NVQVGTALINMYSKCGSLKDARLVFDRVND-----K--- 172 (480)
Q Consensus 111 ~------~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~--- 172 (480)
. .....+...|++++|...+....+... .+. ...++..+...|...|++++|...|++..+ +
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 2 255567889999999999999986311 111 346788899999999999999998887653 1
Q ss_pred --ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCc
Q 038395 173 --DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS----DITFIGLLSACAHAGLVNEGRRFFNTMKDEY---AIE 242 (480)
Q Consensus 173 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~ 242 (480)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...++...+-. +..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 235788899999999999999999998875311 112 2477888899999999999999999887521 221
Q ss_pred C-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC-HhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCc
Q 038395 243 P-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-----EPD-SVLWGTLLGACRLHGN---IALGEKIAEYLISQNLANS 311 (480)
Q Consensus 243 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~~ 311 (480)
| ...++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|..++++. ...|...
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~ 339 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLE 339 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHH
Confidence 3 3567888999999999999999999886 11 122 2335667777888888 66666666655 1223344
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..+..+...|...|++++|...+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5778899999999999999999998864
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.4e-10 Score=108.81 Aligned_cols=300 Identities=11% Similarity=0.042 Sum_probs=176.8
Q ss_pred CCCChhHHHHHHHHH--HhcCChHHHHHHHhhCCC--------CChhHHHHHHHHH--HhcCC---HH------HHHHHH
Q 038395 6 LDKDLYVSTSLVDLY--ARGGDVLSAEKLFATMPQ--------RSLVSLTTMLTCY--AKQGE---VA------AARVLF 64 (480)
Q Consensus 6 ~~~d~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~--~~~g~---~~------~A~~~f 64 (480)
.-|+..+.+.|-.-| .+.+++++|..+++++.+ +++..|-.++..- .-.+. .. .....+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 457778888888888 789999999998887532 2333344443321 10111 11 111444
Q ss_pred hhcC---CCC--HH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHH
Q 038395 65 DDME---EKD--VV---CWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPN----EVTAVAVLSACGQIGALESGRWIHS 131 (480)
Q Consensus 65 ~~~~---~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~~~~~~~~~~~a~~~~~ 131 (480)
+.+. .+. .. .|......+...|++++|+..|++..+... .+| ..++..+..++...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4432 221 11 233344556788999999999998876411 122 3467777778888889888888888
Q ss_pred HHHHhCCC----C-CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHHHH
Q 038395 132 YIENSRNI----K-VNVQVGTALINMYSKCGSLKDARLVFDRVND-----K----DVVVWNSMIVGYAMHGFGKDALQLF 197 (480)
Q Consensus 132 ~~~~~~~~----~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~ 197 (480)
...+...- . ....+++.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77653111 1 1244566777788888888888877776543 1 1245666777777777777777777
Q ss_pred HHHHHc----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCC---HHHHHHH
Q 038395 198 NEMCRI----RLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQ---VEEAYKL 267 (480)
Q Consensus 198 ~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~ 267 (480)
++..+. +.+....++..+...+.+.|+.++|...++...+...-.++ ...+..+...|...|+ +.+|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 776551 11222455666667777777777777777776643221112 2233444445555555 6666666
Q ss_pred HHhCCCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 268 VMDMKIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 268 ~~~m~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
+++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666543332 23344455555556666666655555543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=2.9e-10 Score=106.08 Aligned_cols=212 Identities=9% Similarity=0.057 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHH-------hCCCH-------HHHHHHHHhcCC---C-ChHHHHHHHHHHH
Q 038395 124 ESGRWIHSYIENSRNIKVNVQVGTALINMYS-------KCGSL-------KDARLVFDRVND---K-DVVVWNSMIVGYA 185 (480)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~f~~m~~---~-~~~~~~~li~~~~ 185 (480)
++|..+|+++.+. .+.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 6788888888874 4667788888888776 45886 899999998754 3 5678999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHH-HcCCHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSD-I-TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLS-RAGQVE 262 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~ 262 (480)
+.|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999988 45543 3 7888999999999999999999999843 1233444443333322 369999
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC-CchhHHHHHHHHHHcCChhHHHHHHHH
Q 038395 263 EAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQ---NLA-NSGTYVLLSNIYAAIGNWDGVARVRTL 336 (480)
Q Consensus 263 ~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (480)
+|.++|++. ...| +...|..++..+...|+++.|..+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988 2233 5788999999999999999999999999996 443 556888899999999999999999999
Q ss_pred HHhCC
Q 038395 337 MKEKG 341 (480)
Q Consensus 337 m~~~~ 341 (480)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=4.8e-11 Score=123.45 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCM 251 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 251 (480)
..+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|.+.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 345666666666666666666666666653 33 3456666666677777777777777766632 344 5566777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 252 VNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
..+|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77777777777777777766 44453 67788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 038395 330 VARVRTLMK 338 (480)
Q Consensus 330 a~~~~~~m~ 338 (480)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777664
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.1e-10 Score=97.46 Aligned_cols=159 Identities=13% Similarity=0.019 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 344445555555555555555555443 133444445555555555555555555544431
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~ 299 (480)
+.+...+..+...|...|++++|.+.++++ .. +.+...|..+...+...|++++|...
T Consensus 73 --------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 73 --------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 122334444555555555555555555554 11 22455666666777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 300 AEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++++.+..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777776543
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.1e-10 Score=115.70 Aligned_cols=206 Identities=10% Similarity=-0.014 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038395 88 ANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f 166 (480)
++++++.+.+.... .+.+...+..+..++...|++ ++|...++...+. .+.+...+..+...|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444555444332 122444555555555555555 5555555555543 2333455555555555556666665555
Q ss_pred HhcCC--CChHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHH
Q 038395 167 DRVND--KDVVVWNSMIVGYAMH---------GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA--------GLVNE 227 (480)
Q Consensus 167 ~~m~~--~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------g~~~~ 227 (480)
++..+ |+...|..+...|... |++++|++.|++..+.. +-+...+..+..++... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 55433 3445555555555555 66666666666665532 12345555555555555 66666
Q ss_pred HHHHHHHhhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHH
Q 038395 228 GRRFFNTMKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIA 300 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~ 300 (480)
|...|+...+. .| +...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+
T Consensus 240 A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666532 23 4555666666666666666666666665 2333 3455666666666666666665543
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=112.64 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=68.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC----------
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSR------NIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---------- 172 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------- 172 (480)
++..+...+...|++++|...+..+.+.. ..+....++..+...|...|++++|.+.|+++.+.
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 34444444444444444444444444320 11223334444555555555555555555443210
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCC-------CHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 173 -DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI-------RLKP-------SDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 173 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
...++..+...|...|++++|.+.|+++.+. ...| ....+..+...+...+.+.++...+.....
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 1234555555555556666665555555431 0000 111222333334444555555555555542
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
. -+.....+..+...|.+.|++++|.+.|++.
T Consensus 273 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 273 D--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred C--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1223455666667777777777777766654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=4.7e-10 Score=95.30 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVG 183 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 183 (480)
...+..+...+...|++++|...++.+.+. .+.+..++..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 346777888899999999999999988763 455788899999999999999999999998753 467788888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
+...|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999887753 3355566666667777777777777777666421 1123333344444444444444
Q ss_pred HHHHHH
Q 038395 264 AYKLVM 269 (480)
Q Consensus 264 A~~~~~ 269 (480)
|.+.++
T Consensus 163 A~~~~~ 168 (186)
T 3as5_A 163 ALPHFK 168 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=5.8e-10 Score=107.20 Aligned_cols=299 Identities=9% Similarity=-0.003 Sum_probs=199.7
Q ss_pred ChhHHHHHHHHH--HhcCCHHHHHHHHhhcCC--------CCHHHHHHHHHH--HHHcCChHHHH---------HHHHHH
Q 038395 40 SLVSLTTMLTCY--AKQGEVAAARVLFDDMEE--------KDVVCWNVMIDG--YAQHGLANEAL---------VLFRRM 98 (480)
Q Consensus 40 ~~~~~~~li~~~--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---------~~~~~m 98 (480)
+..+-+.|-..| .+.+++++|.++++++.+ +++..|-.|+.. ....+....+. +.++..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 334444555555 789999999999987542 234444444432 11112222222 555555
Q ss_pred HHCCCCCCH-H---HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC----chhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 99 LAEKVEPNE-V---TAVAVLSACGQIGALESGRWIHSYIENSRNIKV----NVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 99 ~~~g~~pd~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
.....+.+. . .+......+...|++++|...+....+.....+ ...++..+...|...|+++.|...+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 432111111 1 122334456789999999999999886411112 35577888999999999999988887754
Q ss_pred C-----C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 171 D-----K-----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 171 ~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 1 2457888999999999999999999987652 1111 1346777888999999999999999988
Q ss_pred hhhc---CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---hhHHHHHHHH
Q 038395 236 KDEY---AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM----KI--EPD-SVLWGTLLGACRLHGN---IALGEKIAEY 302 (480)
Q Consensus 236 ~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~li~a~~~~~~---~~~a~~~~~~ 302 (480)
.+-. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...+++
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 7511 21222667788899999999999999999887 21 222 3345555566666777 6666666655
Q ss_pred HHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 303 LISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
. ...|.....+..++..|...|++++|...+++..+
T Consensus 329 ~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 K-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11223345677899999999999999999988754
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=6.3e-09 Score=99.61 Aligned_cols=256 Identities=10% Similarity=-0.021 Sum_probs=143.8
Q ss_pred HHhcCCHHHHHHHHhhcCC----CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHH
Q 038395 51 YAKQGEVAAARVLFDDMEE----KDV----VCWNVMIDGYAQHGLANEALVLFRRMLAEKV-EPNE----VTAVAVLSAC 117 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~~~ 117 (480)
+...|++++|...+++... .+. .+++.+...+...|++++|.+.+++...... .++. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3445555555555444221 111 1344455555566666666666655543210 0111 1234444555
Q ss_pred HccCChHHHHHHHHHHHHhC---CCC--C-chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C------ChHHHHHHHHH
Q 038395 118 GQIGALESGRWIHSYIENSR---NIK--V-NVQVGTALINMYSKCGSLKDARLVFDRVND--K------DVVVWNSMIVG 183 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~------~~~~~~~li~~ 183 (480)
...|++++|...++...+.. +.. | ....+..+...|...|++++|...+++... + ...+|..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 56666666666666554420 111 1 233455566667777777777777665431 1 12456667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSD-ITFI-----GLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNL 254 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~ 254 (480)
+...|++++|...+++.......++. ..+. ..+..+...|+.++|...++..... ...+. ...+..+...
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHH
Confidence 77888888888888877643111111 1111 2233466788888888888877632 11111 1134566777
Q ss_pred HHHcCCHHHHHHHHHhC-------CCCCCH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038395 255 LSRAGQVEEAYKLVMDM-------KIEPDS-VLWGTLLGACRLHGNIALGEKIAEYLISQN 307 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~li~a~~~~~~~~~a~~~~~~~~~~~ 307 (480)
+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...++++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 88888888888888765 111122 255666777888889999988888887744
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=9.4e-10 Score=97.50 Aligned_cols=203 Identities=7% Similarity=-0.002 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHH
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMI 181 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li 181 (480)
.|+..+......+...|++++|...+....+. .-+++...+..+...|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 46678888888899999999999999999986 3336777777789999999999999999988754 3567888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHH
Q 038395 182 VGYAMHGFGKDALQLFNEMCRIRLKPS-D-------ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGC 250 (480)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ 250 (480)
..|...|++++|++.|++..+.. |+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 99999999999999999988753 33 3 4467777788889999999999998884 3554 456667
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
+...|...|+. .++++ .+ ..+...|.... ....+.+++|...+++++++.|+++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77777655543 23332 11 22344444433 3345668999999999999999987766655543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=6.7e-10 Score=98.47 Aligned_cols=188 Identities=12% Similarity=-0.064 Sum_probs=130.8
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND----KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGL 215 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 215 (480)
.|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|++.|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777778888888888888888876543 56666666888888888888888888888764 34 34567777
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-c-------cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HhHHHHH
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-V-------EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD---SVLWGTL 283 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l 283 (480)
...+...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77888888888888888887743 343 3 34666677777888888888888776 55565 4556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...+.. .+...++++....+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666643 344556666666666554544333 34455678899888888764
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=1.3e-09 Score=99.50 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=83.1
Q ss_pred cCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCCCchhHHHHHHH
Q 038395 85 HGLANEALVLFRRMLAE-------KVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS------RNIKVNVQVGTALIN 151 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~-------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~ 151 (480)
.|++++|+..|++..+. ..+....++..+...+...|++++|...+..+.+. ...+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555544331 11112345555666666666666666666665543 012234456666777
Q ss_pred HHHhCCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHH
Q 038395 152 MYSKCGSLKDARLVFDRVND-------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI------RLKP-SDITFI 213 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~ 213 (480)
.|...|++++|.+.|++... + ...+|..+...|...|++++|++.|++..+. +-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777777665432 1 2345556666666666666666666665543 1122 123455
Q ss_pred HHHHHHHccCCHHHHHHHHHHhh
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+...+...|++++|..+++.+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555666666666666665554
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=7.3e-10 Score=114.68 Aligned_cols=163 Identities=13% Similarity=0.170 Sum_probs=122.8
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038395 140 KVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKP-SDITFIGL 215 (480)
Q Consensus 140 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 215 (480)
+.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .| +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33466777777777777788777777776653 35677777888888888888888888887764 34 35677778
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGACRLHGN 292 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~~~ 292 (480)
..++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|.+.|++. .+.|+ ...|..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88888888888888888877743 454 667788888888888888888888876 45564 6778888888888888
Q ss_pred hhHHHHHHHHHHHcC
Q 038395 293 IALGEKIAEYLISQN 307 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~ 307 (480)
+++|.+.+++++++.
T Consensus 161 ~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 161 WTDYDERMKKLVSIV 175 (723)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888887743
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=5e-08 Score=89.04 Aligned_cols=174 Identities=11% Similarity=0.003 Sum_probs=87.8
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 162 ARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLK-PSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 162 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444332 23334445555555666666666666655443321 1334444555556666666666666666653
Q ss_pred hcCCcC-----CccHHHHHHHHH--HH--cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 038395 238 EYAIEP-----KVEHYGCMVNLL--SR--AGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQ- 306 (480)
Q Consensus 238 ~~~~~p-----~~~~~~~li~~~--~~--~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~- 306 (480)
. .| +..+...|..++ .. .+++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 34 233333343332 12 22566666666666 22343222233333556666666666666655543
Q ss_pred ---------CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 307 ---------NLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 307 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|.++.++..++..+...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35555555555555555554 556666666554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=5.8e-09 Score=95.03 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAE------KVEP-NEVTAVAVLSACGQIGALESGRWIHSYIENS------RN 138 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 138 (480)
..+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|...+..+.+. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666666666666666666666665543 1122 2345556666666666666666666665543 01
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK-----------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI---- 203 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 203 (480)
.+....++..+...|...|++++|...|++..+. ...++..+...|...|++++|...|++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1234556666677777777777777776655321 2346677777777788888888777776642
Q ss_pred ---CCCCCHH-HHHHHHHHHHccC------CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 204 ---RLKPSDI-TFIGLLSACAHAG------LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 204 ---g~~p~~~-t~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
...|... .+..+.......+ .+..+...+..... ..+.....+..+...|.+.|++++|..++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122222 2222222222222 23333333333221 11122456777888888888888888888764
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=2.7e-07 Score=94.44 Aligned_cols=334 Identities=10% Similarity=0.013 Sum_probs=221.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCC---HHHHHHHHhhcCC-----CCHHHH
Q 038395 7 DKDLYVSTSLVDLYARGGDVLSAEKLFATMPQ--R-SLVSLTTMLTCYAKQGE---VAAARVLFDDMEE-----KDVVCW 75 (480)
Q Consensus 7 ~~d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~-----~~~~~~ 75 (480)
+-|..+|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.|. ++.+..+|++... |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45788999999999999999999999999864 3 55678888888888888 9999999999763 788888
Q ss_pred HHHHHHHHHcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHc---------cCChHHHHHHHHHHHH
Q 038395 76 NVMIDGYAQHGLA--------NEALVLFRRMLA-EKV-EPN-EVTAVAVLSACGQ---------IGALESGRWIHSYIEN 135 (480)
Q Consensus 76 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 135 (480)
..-+.-..+.++. +...++|++.+. .|. .|+ ...|...+..... .+.++.++.+|..+..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766555543 334477877654 466 564 4566665554322 2345667777777764
Q ss_pred hCCCCCchhHHHHHHHHHHh-------------CCCHHHHH---------------------------------------
Q 038395 136 SRNIKVNVQVGTALINMYSK-------------CGSLKDAR--------------------------------------- 163 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~-------------~g~~~~A~--------------------------------------- 163 (480)
. ....-..+|......-.. ..+++.|.
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3 211111222111100000 00111122
Q ss_pred ----------------------------HHHHhcCC---CChHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHH
Q 038395 164 ----------------------------LVFDRVND---KDVVVWNSMIVGYAMHGFGKDAL-QLFNEMCRIRLKPSDIT 211 (480)
Q Consensus 164 ----------------------------~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t 211 (480)
.+|++... .+...|-..+.-+.+.|+.++|. ++|++.... .+.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 22322221 13445666666666788888886 999988764 3345555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcC--------CcCC------------ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYA--------IEPK------------VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
+...+......|++++|.++|+.+..... -.|+ ...|...+....+.|.++.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777778888999999999999875310 0132 236777888888899999999999887
Q ss_pred -CC--CCCHhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 272 -KI--EPDSVLWGTLLGACRLH-GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 272 -~~--~p~~~~~~~li~a~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.. .+....|...+..-... ++.+.|..+|+..++..|.++..+...+......|+.+.|..+|++......
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 21 12233443333222333 4589999999999999888887778888888889999999999998877654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=2.1e-08 Score=92.50 Aligned_cols=170 Identities=11% Similarity=-0.076 Sum_probs=101.1
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 038395 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE----KVEPN-EVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 56 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
++++|...|++. ...|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776664 45677888888888888877543 22222 356777777788888888888777
Q ss_pred HHHHHhC---CCCC-chhHHHHHHHHHHhC-CCHHHHHHHHHhcCC--C---C----hHHHHHHHHHHHhcCChHHHHHH
Q 038395 131 SYIENSR---NIKV-NVQVGTALINMYSKC-GSLKDARLVFDRVND--K---D----VVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 131 ~~~~~~~---~~~~-~~~~~~~li~~y~~~-g~~~~A~~~f~~m~~--~---~----~~~~~~li~~~~~~g~~~~A~~l 196 (480)
+...+.. |... -..+++.+..+|... |++++|...|++..+ + + ..+|+.+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7766531 1000 123555666666664 666666666665432 1 1 23455566666666666666666
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 197 FNEMCRIRLKPSD------ITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 197 ~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
|++..+....... ..+..+..++...|++++|...|+...
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666553222111 134445555566666666666666655
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=6.9e-09 Score=95.85 Aligned_cols=209 Identities=9% Similarity=-0.061 Sum_probs=136.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCCCc-hhHHHHHHHHHHhCCCHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR---NIKVN-VQVGTALINMYSKCGSLKDA 162 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~y~~~g~~~~A 162 (480)
++++|...|.+. ...+...|++++|...+....+.. +.+++ ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888888776 345677899999998888776531 22222 46788888899999999998
Q ss_pred HHHHHhcCC-----CC----hHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHH
Q 038395 163 RLVFDRVND-----KD----VVVWNSMIVGYAMH-GFGKDALQLFNEMCRIRLK-PS----DITFIGLLSACAHAGLVNE 227 (480)
Q Consensus 163 ~~~f~~m~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~ 227 (480)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888877653 11 34677788888885 8888888888887653110 01 2457777788888888888
Q ss_pred HHHHHHHhhhhcCCcCCcc-----HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh------HHHHHHHHHH--hcCCh
Q 038395 228 GRRFFNTMKDEYAIEPKVE-----HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSV------LWGTLLGACR--LHGNI 293 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~li~a~~--~~~~~ 293 (480)
|...|+...+...-.+... .|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888774311111111 4566677778888888888888877 4444421 2344455554 34556
Q ss_pred hHHHHHHHHHHHcCCCC
Q 038395 294 ALGEKIAEYLISQNLAN 310 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~~~ 310 (480)
++|...++.+..++|..
T Consensus 257 ~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHhccCCccHHHH
Confidence 67777766666555543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=3.9e-08 Score=89.01 Aligned_cols=205 Identities=9% Similarity=-0.051 Sum_probs=136.7
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHH
Q 038395 141 VNVQVGTALINMYSKCGSLKDARLVFDRVND--K-D---VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL-KPS-DITF 212 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~ 212 (480)
.+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666677777788888888888877754 2 3 45677777778888888888888888776422 112 3345
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHhhhhcCCcCCc-cHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 038395 213 IGLLSACAH--------AGLVNEGRRFFNTMKDEYAIEPKV-EHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTL 283 (480)
Q Consensus 213 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 283 (480)
..+..++.. .|++++|...|+.+.+. .|+. ....++.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 555666666 77777887777777754 3432 2222211111000000 1124567
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCccCCceee
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYAAI----------GNWDGVARVRTLMKEKGVQKEPGCSS 350 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~ 350 (480)
...+...|+++.|...++++++..|++ +..+..+..+|... |++++|...++++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 788999999999999999999999874 34788888899877 889999999999876532
Q ss_pred EEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038395 351 IELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386 (480)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 386 (480)
.++...++...+.++...+.+
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556677766666666543
No 90
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.99 E-value=4.8e-07 Score=92.61 Aligned_cols=214 Identities=8% Similarity=-0.024 Sum_probs=160.7
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH-HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038395 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR-LVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMC 201 (480)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 201 (480)
+..+|++.... ++.+..+|...+..+...|+.++|. ++|++... .+...|-..+....+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556666653 4556667777777777889998996 99987654 356678888999999999999999999987
Q ss_pred HcC---------CCCC------------HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-
Q 038395 202 RIR---------LKPS------------DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG- 259 (480)
Q Consensus 202 ~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g- 259 (480)
... -.|+ ...|...+....+.|.++.|+.+|..+.+.. ..+....|...+..-.+.+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCC
Confidence 641 0142 2357777887788899999999999998541 1223344544444444554
Q ss_pred CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHcCChhHHHHHH
Q 038395 260 QVEEAYKLVMDM--KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA---NSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 260 ~~~~A~~~~~~m--~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
+.+.|.++|+.. ...-+...|...+.-....|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 599999999987 22235677888888888899999999999999998773 3457778888888999999999999
Q ss_pred HHHHhCCC
Q 038395 335 TLMKEKGV 342 (480)
Q Consensus 335 ~~m~~~~~ 342 (480)
+++.+.-.
T Consensus 565 ~R~~~~~P 572 (679)
T 4e6h_A 565 KRFFEKFP 572 (679)
T ss_dssp HHHHHHST
T ss_pred HHHHHhCC
Confidence 99987653
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=2.1e-08 Score=90.82 Aligned_cols=200 Identities=10% Similarity=-0.028 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C----ChH
Q 038395 105 PNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN---VQVGTALINMYSKCGSLKDARLVFDRVND--K----DVV 175 (480)
Q Consensus 105 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~----~~~ 175 (480)
.+...+......+.+.|++++|...++.+.+. .+.+ ...+..+...|.+.|++++|...|++..+ | ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 35677888888899999999999999999975 2333 67788899999999999999999998764 2 235
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCcc
Q 038395 176 VWNSMIVGYAM--------HGFGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVE 246 (480)
Q Consensus 176 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 246 (480)
++..+..++.. .|++++|+..|++..+.. |+. .....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 999999999999998753 432 121111 111111110 011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLH----------GNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~----------~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.+..+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2456677888899999999998887 22333 45677777777766 888999999999999999876
Q ss_pred hh---HHHHHHHHHHcCCh
Q 038395 312 GT---YVLLSNIYAAIGNW 327 (480)
Q Consensus 312 ~~---~~~l~~~~~~~g~~ 327 (480)
.+ ...+...+...+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 43 33444444444433
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.95 E-value=1e-07 Score=87.06 Aligned_cols=178 Identities=10% Similarity=0.014 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 126 GRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND-----KDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
+...++..... + +++......+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555443 2 34444455667777777888888777777632 24456667777888888888888888888
Q ss_pred HHcCCCC-----CHHHHHHHHHHHH--c--cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 201 CRIRLKP-----SDITFIGLLSACA--H--AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 201 ~~~g~~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+. .| +..+...+..++. . .++..+|..+|+++... .|+...-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 763 55 3555555555522 2 23788888888887643 344233334444777888888888887754
Q ss_pred -CC----------CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 272 -KI----------EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 272 -~~----------~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
.. .| |+.+...+|......|+ .|.++++++.+..|+++.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 21 14 46666566666666776 788999999999998864
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=9.8e-08 Score=84.31 Aligned_cols=182 Identities=9% Similarity=-0.006 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND--KD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD--ITFIG 214 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ 214 (480)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455666777888888888888887653 22 246777778888888888888888888764322111 13333
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHhhhhcCCcCCc-cHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038395 215 LLSACAH------------------AGLVNEGRRFFNTMKDEYAIEPKV-EHYGCMVNLLSRAGQVEEAYKLVMDMKIEP 275 (480)
Q Consensus 215 ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 275 (480)
+..++.. .|+.++|...|+.+.+. .|+. ..+.+.... +.+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH----------
Confidence 3333332 34555565555555532 2332 111111100 0000000
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS---GTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
......+...+...|+++.|...++++++..|+++ .++..+..+|.+.|++++|.+.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999875 4688899999999999999999999987754
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.2e-08 Score=79.76 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 255 (480)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+... .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45555566666666666666666655432 123444444555555555555555555554422 11
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 256 SRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.+...|..+...+...|++++|...++++.+..|.+...+..++.+|...|++++|...++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2344455555556666666666666666666666555566666666666666666666666
Q ss_pred HHHh
Q 038395 336 LMKE 339 (480)
Q Consensus 336 ~m~~ 339 (480)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6544
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=3.4e-08 Score=78.60 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
.+..+...|...|++++|.++|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 577888999999999999999998753 467889999999999999999999999998764 3356677778888888
Q ss_pred cCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 222 AGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 899999988888877431 223445555556666666666666655544
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=7.1e-08 Score=88.75 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=135.5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 160 KDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 160 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
+...+.+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344455555554556677778888888999999999999988753 224567778888899999999999999988743
Q ss_pred CCcCCccHHHHHH-HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhH
Q 038395 240 AIEPKVEHYGCMV-NLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTY 314 (480)
Q Consensus 240 ~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 314 (480)
.|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...+
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 56543332222 3366777888888888776 3345 57889999999999999999999999999999987 7789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 038395 315 VLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
..|+.+|...|+.++|...+++-.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999988887653
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=7.4e-09 Score=107.35 Aligned_cols=168 Identities=9% Similarity=-0.070 Sum_probs=129.4
Q ss_pred HhCCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038395 154 SKCGSLKDARLVFDRVN-----------DKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA 222 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 222 (480)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888888775 2356778888888888888888888888887753 22556777777888888
Q ss_pred CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHH
Q 038395 223 GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKI 299 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~ 299 (480)
|++++|...|++..+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888743 45 46677888888888888888 8888776 3444 467788888888888888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 300 AEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
++++++.+|.+..++..+..+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888766555
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=2.7e-09 Score=87.91 Aligned_cols=138 Identities=9% Similarity=-0.029 Sum_probs=93.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCH
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 261 (480)
+...|+.++|+..++..... .|+ ...+..+...|...|++++|.+.|+...+. .| +...|..+...|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 34455666666666655432 222 233445666667777777777777776632 34 356677777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEK-IAEYLISQNLANSGTYVLLSNIYAAIGN 326 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (480)
++|...|++. .+.| +...|..+...+...|+.++|.+ .++++++++|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777776 4445 46778888888888888876554 4688899999988888888877777764
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.1e-07 Score=98.44 Aligned_cols=188 Identities=11% Similarity=-0.016 Sum_probs=148.6
Q ss_pred HccCChHHHHHHHHHHH--------HhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHh
Q 038395 118 GQIGALESGRWIHSYIE--------NSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAM 186 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 186 (480)
...|++++|.+.++... + ..+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 77899999999999988 4 3456778889999999999999999999998874 477899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHH
Q 038395 187 HGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 187 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 265 (480)
.|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|+.+.+. .| +...|..+..+|.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998853 2246778888899999999999 9999998853 45 4678889999999999999999
Q ss_pred HHHHhC-CCCCC-HhHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCCCCch
Q 038395 266 KLVMDM-KIEPD-SVLWGTLLGACRLHGN-----IALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 266 ~~~~~m-~~~p~-~~~~~~li~a~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 312 (480)
+.|++. ...|+ ...|..+..++...++ .+...++.+.+....+.++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999998 66776 5677777777766555 23444444444445444443
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.9e-07 Score=79.59 Aligned_cols=161 Identities=9% Similarity=-0.099 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhhhhcCCcCCccHH
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG----LVNEGRRFFNTMKDEYAIEPKVEHY 248 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 248 (480)
+..++..+...|...+++++|++.|++..+.| +...+..+-..|.. + +.++|..+|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 55556666666666666666666666666544 34445555555555 4 667777777666531 234455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 249 GCMVNLLSR----AGQVEEAYKLVMDM-KIEPD---SVLWGTLLGACRL----HGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 249 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
..|...|.. .+++++|.++|++. ...|. +..+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 556666655 66777777777776 33332 5667777777776 66788888888888777 445557777
Q ss_pred HHHHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 038395 317 LSNIYAAI-G-----NWDGVARVRTLMKEKGV 342 (480)
Q Consensus 317 l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 342 (480)
|..+|... | +.++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 3 77888888877776664
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=6.2e-08 Score=81.96 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 264 AYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN--SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 264 A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
|...+++. ...| +...+..+...+...|++++|...++++++..|.. +..+..+..+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444444 2334 46777777788888888888888888888887754 4577788888888888888888777654
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=4.1e-08 Score=80.70 Aligned_cols=122 Identities=11% Similarity=-0.042 Sum_probs=101.6
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGN 292 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~ 292 (480)
...+...|++++|...+..... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445667889999999888763 2443 556677899999999999999999988 5555 58899999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHH-HHHHHhC
Q 038395 293 IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARV-RTLMKEK 340 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~ 340 (480)
+++|...++++++.+|.++.++..+..+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 4666543
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=4.2e-07 Score=79.10 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=78.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+.+. .+.+..++..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 6777777777777777777777642 225566777777777777777777777777764 3445666666666665544
Q ss_pred C--HHHHHHHHHhcCCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 158 S--LKDARLVFDRVNDKDVV--VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 158 ~--~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
+ .+.+...|+....++.. .|..+..++...|++++|+..|++..+ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 34455566665555432 233344455556677777777777665 345543
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=2.7e-07 Score=85.74 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=145.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038395 85 HGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARL 164 (480)
Q Consensus 85 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 164 (480)
.|++++|.+++++..+.. +.. + +...++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 567888888888776531 110 0 11135566665555443 345667778777777
Q ss_pred HHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCCHHHHHH
Q 038395 165 VFDRVND-----KD----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIR---LKPS--DITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 165 ~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
.|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766542 11 3467778888888899998888888765421 1121 3567777788888 99999999
Q ss_pred HHHHhhhhcCCcC----CccHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCChhHHHH
Q 038395 231 FFNTMKDEYAIEP----KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI---EPD----SVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 231 ~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~li~a~~~~~~~~~a~~ 298 (480)
.|+....-..-.. ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9988774321111 1356778888999999999999999887 11 112 2356667777788899999999
Q ss_pred HHHHHHHcCCCCchh-----HHHHHHHHHHcCChhHHHHH
Q 038395 299 IAEYLISQNLANSGT-----YVLLSNIYAAIGNWDGVARV 333 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~ 333 (480)
.+++.+ ..|....+ ...++..| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88864332 33455555 56776665553
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=5.4e-07 Score=76.05 Aligned_cols=152 Identities=13% Similarity=0.013 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccC
Q 038395 46 TMLTCYAKQGEVAAARVLFDDMEE---KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSA-CGQIG 121 (480)
Q Consensus 46 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~-~~~~~ 121 (480)
.+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+.......... +...+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 334444455555555555555443 13444555555555555555555555554432 2222221111111 11111
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C---ChHHHHHHHHHHHhcCChHHHHHH
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--K---DVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
....+...++...+. .+.+...+..+...|...|++++|...|+++.+ | +...|..+...|...|+.++|...
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 122345555555543 233455666666666666666666666665543 2 134566666666666766666666
Q ss_pred HHHHH
Q 038395 197 FNEMC 201 (480)
Q Consensus 197 ~~~m~ 201 (480)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=2.3e-07 Score=80.81 Aligned_cols=184 Identities=14% Similarity=0.059 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEV-TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
+-.....+.+.|++++|+..|++..+. .|+.. .+.. . ... . .........+.+...|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~-~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------K-NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------T-TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------c-hhhhhHHHHHHHHHHH
Confidence 334445566777778887777777663 34322 2222 0 000 0 0111122233456666
Q ss_pred HhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHH
Q 038395 154 SKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL--VNEG 228 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a 228 (480)
.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666665542 355666666667777777777777777766642 1134455555555544433 2233
Q ss_pred HHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 038395 229 RRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLL 284 (480)
Q Consensus 229 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 284 (480)
...+.... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33333332 11121122233344455567777777777765 5666655444443
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=1.6e-07 Score=95.38 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 156 CGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998865 367889999999999999999999999998853 235678888999999999999999999
Q ss_pred HHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 038395 233 NTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH---GNIALGEKIAEYLISQ 306 (480)
Q Consensus 233 ~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~---~~~~~a~~~~~~~~~~ 306 (480)
++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999854 34 4678889999999999999999999987 3344 578889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 038395 307 NLANSGTYVLLS 318 (480)
Q Consensus 307 ~~~~~~~~~~l~ 318 (480)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999887777665
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=2.7e-07 Score=93.63 Aligned_cols=146 Identities=9% Similarity=-0.083 Sum_probs=109.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038395 120 IGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQL 196 (480)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (480)
.|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999988763 345678889999999999999999999998765 3677899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 038395 197 FNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA---GQVEEAYKLVMDM 271 (480)
Q Consensus 197 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m 271 (480)
|++..+.. +.+...+..+..++...|++++|.+.++...+. .| +...+..+...|... |++++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99998853 235678888899999999999999999998854 34 467788889999999 9999999999887
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=6.3e-07 Score=82.33 Aligned_cols=157 Identities=10% Similarity=-0.024 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHH-HHHH
Q 038395 107 EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNS-MIVG 183 (480)
Q Consensus 107 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~ 183 (480)
...+..+...+.+.|++++|...++.+.+. .+.+...+..+...|.+.|++++|...|+++.. |+...... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 344555555566666666666666666653 233455566666666666666666666666543 33222111 1222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCC
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~ 260 (480)
+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+. .|+ ...+..+...|...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCC
Confidence 444555555555555555432 223444555555555566666666655555533 222 3344445555555555
Q ss_pred HHHHHHHHH
Q 038395 261 VEEAYKLVM 269 (480)
Q Consensus 261 ~~~A~~~~~ 269 (480)
.++|...++
T Consensus 271 ~~~a~~~~r 279 (287)
T 3qou_A 271 GDALASXYR 279 (287)
T ss_dssp TCHHHHHHH
T ss_pred CCcHHHHHH
Confidence 554444443
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=1.3e-05 Score=73.77 Aligned_cols=227 Identities=10% Similarity=0.015 Sum_probs=153.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH----HhC
Q 038395 84 QHGLANEALVLFRRMLAEKVEPN-EVTAVAVLSACGQIG--ALESGRWIHSYIENSRNIKVNVQVGTALINMY----SKC 156 (480)
Q Consensus 84 ~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y----~~~ 156 (480)
+....++|++++.+++.. .|+ ...|+.--.++...+ ++++++..++.+... .+.+..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhc
Confidence 334456888888888874 454 445676666777777 888888888888874 445556666554444 455
Q ss_pred ---CCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----
Q 038395 157 ---GSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGK--DALQLFNEMCRIRLKPSDITFIGLLSACAHAGL---- 224 (480)
Q Consensus 157 ---g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 224 (480)
+++++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 678888888887764 47778887777777888877 888888888876543 56666655555556665
Q ss_pred --HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHHhcCChhHH
Q 038395 225 --VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE-AYKLVMDM-KI----EPDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 225 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~li~a~~~~~~~~~a 296 (480)
++++.+.++.+... -+-|...|+-+-..+.+.|+..+ +..+..+. .. ..++..+..+...+.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 77777777777643 13346667777777777776443 44555554 21 23566777777777777888888
Q ss_pred HHHHHHHHH-cCCCCchhHHHH
Q 038395 297 EKIAEYLIS-QNLANSGTYVLL 317 (480)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~~~l 317 (480)
.++++.+.+ .+|.....|...
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHH
Confidence 888888776 677665555443
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=6.6e-07 Score=78.88 Aligned_cols=185 Identities=17% Similarity=0.043 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-chhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC-h---HHHH
Q 038395 106 NEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKV-NVQVGTALINMYSKCGSLKDARLVFDRVND--KD-V---VVWN 178 (480)
Q Consensus 106 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~---~~~~ 178 (480)
+...+..+...+.+.|++++|...++.+.+.....+ ....+..+..+|.+.|++++|...|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445666777888999999999999999997522222 235778889999999999999999998764 32 2 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhhc
Q 038395 179 SMIVGYAM------------------HGFGKDALQLFNEMCRIRLKPSDI-TFIGLLSACAHAGLVNEGRRFFNTMKDEY 239 (480)
Q Consensus 179 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 239 (480)
.+..++.. .|+.++|+..|+++.+. .|+.. ....... . ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH---
Confidence 55555554 57899999999999875 45432 2211110 0 00111111
Q ss_pred CCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 240 AIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 240 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|++.
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 11234667888999999999999987 33344 25688889999999999999999999999888754
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=5.5e-07 Score=78.36 Aligned_cols=91 Identities=12% Similarity=-0.124 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL 123 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~ 123 (480)
+..+...+.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44455566666777777777777666666677777777777777777777777666542 23455666666666666666
Q ss_pred HHHHHHHHHHHH
Q 038395 124 ESGRWIHSYIEN 135 (480)
Q Consensus 124 ~~a~~~~~~~~~ 135 (480)
++|...++...+
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=3e-06 Score=77.95 Aligned_cols=161 Identities=7% Similarity=-0.088 Sum_probs=117.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc----cHHH
Q 038395 179 SMIVGYAMHGFGKDALQLFNEMCRIR-LKPSDI----TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV----EHYG 249 (480)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~ 249 (480)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...+++++|...|+.+.+...-.++. ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788889999999998887632 223321 23346666777788999999998887521112222 2578
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-----CC---CCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CchhH
Q 038395 250 CMVNLLSRAGQVEEAYKLVMDM-----KI---EPD-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------NSGTY 314 (480)
Q Consensus 250 ~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~ 314 (480)
.+...|...|++++|...|+++ .. .+. ..++..+...|...|++++|...++++++..+. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999998888776 11 112 347888999999999999999999999885432 25678
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHh
Q 038395 315 VLLSNIYAAIGN-WDGVARVRTLMKE 339 (480)
Q Consensus 315 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 339 (480)
..+..+|.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999998887653
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=1.6e-07 Score=77.07 Aligned_cols=102 Identities=8% Similarity=-0.020 Sum_probs=88.6
Q ss_pred CCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 240 AIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 240 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 556777788889999999999999988 4445 58889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.5e-06 Score=79.96 Aligned_cols=164 Identities=5% Similarity=-0.094 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----c
Q 038395 175 VVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-----ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----V 245 (480)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 245 (480)
..+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...++...+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667778888888888888877664322111 12334555667788899999888887642111112 3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------C
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM----KIEPD-----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLA------N 310 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~------~ 310 (480)
..++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778888899999999998888775 11222 257888899999999999999999998875421 1
Q ss_pred chhHHHHHHHHHHcCChhHH-HHHHHHHH
Q 038395 311 SGTYVLLSNIYAAIGNWDGV-ARVRTLMK 338 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 338 (480)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788899999999999999 77677654
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=2e-06 Score=75.07 Aligned_cols=168 Identities=9% Similarity=-0.010 Sum_probs=99.1
Q ss_pred HHHHHhhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 038395 60 ARVLFDDMEE-KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG----ALESGRWIHSYIE 134 (480)
Q Consensus 60 A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 134 (480)
|.+.|++..+ .+..++..|...|...+++++|++.|++..+.| +...+..+...+.. + +.++|...++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444333 355666666666666677777777777666654 44555555555555 4 6667777776665
Q ss_pred HhCCCCCchhHHHHHHHHHHh----CCCHHHHHHHHHhcCCCC-----hHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 038395 135 NSRNIKVNVQVGTALINMYSK----CGSLKDARLVFDRVNDKD-----VVVWNSMIVGYAM----HGFGKDALQLFNEMC 201 (480)
Q Consensus 135 ~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 201 (480)
+. | +...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .+++++|+..|++..
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 54 3 44455666666665 566777777776665532 4566666666666 566777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHhhh
Q 038395 202 RIRLKPSDITFIGLLSACAHA-G-----LVNEGRRFFNTMKD 237 (480)
Q Consensus 202 ~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~ 237 (480)
+.+ ++...+..|...|... | +.++|..+|+...+
T Consensus 157 ~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 157 SLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 541 2233444444444432 2 66677766666653
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=8.9e-07 Score=76.99 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=96.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRL 289 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~ 289 (480)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344455666777777777776653 445667777777777777777777777766 2233 56778888888889
Q ss_pred cCChhHHHHHHHHHHHcCCCCc----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 290 HGNIALGEKIAEYLISQNLANS----------------GTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
.|++++|...++++++..|.+. .++..+..+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998887766 788999999999999999999999988754
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=2.3e-07 Score=75.97 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|+++.++..+..+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455667778888899999999998887 3344 67888888899999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|++++|.+.++...+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999888664
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.58 E-value=1.5e-05 Score=73.37 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=165.9
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----Hhc---CC
Q 038395 122 ALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG--SLKDARLVFDRVND---KDVVVWNSMIVGY----AMH---GF 189 (480)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~----~~~---g~ 189 (480)
..++|+...+.++.. .+.+..+|+.--..+...| +++++++.++.+.. .+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 446899999999874 4456677888888888888 99999999998864 4667787765555 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC------H
Q 038395 190 GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ------V 261 (480)
Q Consensus 190 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~ 261 (480)
+++++++++++.+...+ +...|..-.-.+.+.|..+ ++.++++.+.+.. .-|...|+.-...+.+.|. +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999986433 6677777666677788887 9999999998541 3345566666666666676 8
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh-hHHHHHHHHHHHcC---CCCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI-ALGEKIAEYLISQN---LANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+++++.++++ ...| |...|+-+-..+...|+. +.......++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999998877 3344 688999888888888874 44556777776665 7788889999999999999999999999
Q ss_pred HHHh
Q 038395 336 LMKE 339 (480)
Q Consensus 336 ~m~~ 339 (480)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=1.9e-05 Score=78.18 Aligned_cols=353 Identities=10% Similarity=-0.029 Sum_probs=213.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CChhHHHHHHHHHHhcCC-HHHHHHHHhhcCC------CCHHHHHHHH
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQ--RSLVSLTTMLTCYAKQGE-VAAARVLFDDMEE------KDVVCWNVMI 79 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~------~~~~~~~~li 79 (480)
--.+|...+..+-. |+++.+..+|++... |++..|..-+....+.++ .+....+|+.... .+...|...+
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34577778887765 889999999998764 888899998888877764 3456667766442 3667888888
Q ss_pred HHHH----HcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHH-------------ccCChHHHHHHHHHHHHhCCCC
Q 038395 80 DGYA----QHGLANEALVLFRRMLAEKVEPN-E-VTAVAVLSACG-------------QIGALESGRWIHSYIENSRNIK 140 (480)
Q Consensus 80 ~~~~----~~g~~~~A~~~~~~m~~~g~~pd-~-~t~~~ll~~~~-------------~~~~~~~a~~~~~~~~~~~~~~ 140 (480)
..+. .+++.+.+.++|++.+.. ++. . ..|......-. ..+.+..|+.++..+... --.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~-~~~ 169 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL-IRG 169 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH-Hhh
Confidence 7654 346788899999999873 332 1 22222211100 012233345555544432 001
Q ss_pred CchhHHHHHHHHHHhCC--C-----HHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038395 141 VNVQVGTALINMYSKCG--S-----LKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI 210 (480)
Q Consensus 141 ~~~~~~~~li~~y~~~g--~-----~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 210 (480)
.+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |...
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 13345655555433221 1 2345667777654 35778988888889999999999999999987 5443
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhc---C-----C---cCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEY---A-----I---EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEP--DS 277 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~ 277 (480)
.+.. +|......++. ++.+.+.+ . . ......|...++.+.+.+.++.|..+|++.. .| +.
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~ 319 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGP 319 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCH
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCCh
Confidence 3222 12221111111 22222211 0 0 0112456666777777888999999999982 33 33
Q ss_pred hHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCE
Q 038395 278 VLWGTLLGACRL-HGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNK 356 (480)
Q Consensus 278 ~~~~~li~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 356 (480)
.+|......-.. .++.+.|..+|+.+++..|+++..+...+....+.|+.+.|..+|+...+ ...-|..
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~---- 389 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDS---- 389 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHH----
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHH----
Confidence 444332222222 34799999999999998888777777778888899999999999998721 1111211
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHCC
Q 038395 357 VHEFLAGDLRHPKSKEIYMMLEEINGWLKAEG 388 (480)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 388 (480)
++.=...||..+.+.+.+++....++..+
T Consensus 390 ---~~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 390 ---MIEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp ---HHHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 01112335676666666666666565433
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=5.4e-07 Score=71.46 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
.+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+..+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555556666666666666554 2233 3555666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHh
Q 038395 325 GNWDGVARVRTLMKE 339 (480)
Q Consensus 325 g~~~~a~~~~~~m~~ 339 (480)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665544
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2.2e-06 Score=78.88 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=91.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc----hhHHHHH
Q 038395 79 IDGYAQHGLANEALVLFRRMLAEKV-EPNEV----TAVAVLSACGQIGALESGRWIHSYIENSRNIKVN----VQVGTAL 149 (480)
Q Consensus 79 i~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 149 (480)
+..+...|++++|.+++++..+... .|+.. .+..+...+...+++++|...+..+.+...-.++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666666666666666655321 12211 2223444555556666666666666653111112 2256666
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVND------K----DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI----RLKPS-DITFIG 214 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ 214 (480)
...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|++.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777666665541 1 1235666777777777777777777766542 22222 456667
Q ss_pred HHHHHHccCC-HHHHHHHHHHhhh
Q 038395 215 LLSACAHAGL-VNEGRRFFNTMKD 237 (480)
Q Consensus 215 ll~a~~~~g~-~~~a~~~~~~m~~ 237 (480)
+..++...|+ .++|...++....
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777773 5777777766553
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=1.5e-06 Score=67.87 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KI-EPDSVLWGTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~a~ 287 (480)
..+..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|..+++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 344555555556666666666666655321 223445566666666677777777666665 22 23566777788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777776665543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=1.7e-06 Score=71.55 Aligned_cols=127 Identities=7% Similarity=-0.049 Sum_probs=88.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...|....+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34445555556666666666666655321 223555666666777777777777777665 2233 4677888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHH--HHHHHHHcCChhHHHHHHHHHHh
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVL--LSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..|++++|...++++++..|.+...+.. ++..+...|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999888777644 44447888999999998887643
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=4.2e-07 Score=83.27 Aligned_cols=191 Identities=11% Similarity=-0.026 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444555555556666666665555432 245555666666666666666666666655432 12344555556666
Q ss_pred HccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 038395 220 AHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEK 298 (480)
Q Consensus 220 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~ 298 (480)
...|++++|...|....+. .|+ ...+...+....+..+...... .......++......+ ..+ ..|+.+.|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 6666666666666655532 121 1111111111111111111111 1112223333333333 222 2578888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHc-CChhHHHHHHHHHHhC
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAAI-GNWDGVARVRTLMKEK 340 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 340 (480)
.++++++.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888888887766666666666666 6688888888877653
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=1.2e-06 Score=69.48 Aligned_cols=109 Identities=8% Similarity=-0.056 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~ 287 (480)
..+......+.+.|++++|.+.|+...+. -+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34555666777777777777777777643 1234666777777788888888888887776 3344 477888899999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
...|++++|...++++++++|.+..++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998777666543
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.51 E-value=6.5e-07 Score=83.12 Aligned_cols=197 Identities=8% Similarity=-0.043 Sum_probs=147.6
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038395 119 QIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFN 198 (480)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (480)
..|++++|.+++++..+. .+.. .+...+++++|...|.+. ...|...|++++|.+.|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~--~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY--LKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH--HCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH--cccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 356788899999888764 1211 111157899998887764 567888999999999999
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc---CCcC-CccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 199 EMCRI----RLKP-SDITFIGLLSACAHAGLVNEGRRFFNTMKDEY---AIEP-KVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 199 ~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
+..+. |-.+ -..+|..+...|...|++++|...|+...+-+ |-.+ ...++..+...|.+ |++++|.+.|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 1111 13478888889999999999999999876432 1111 13567788888988 99999999998
Q ss_pred hC-CCCC---C----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHcCChhHHHHHHH
Q 038395 270 DM-KIEP---D----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS------GTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 270 ~m-~~~p---~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
+. .+.| + ..++..+...+...|++++|...++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76 1111 1 46788899999999999999999999999655332 256677888889999999999999
Q ss_pred HHH
Q 038395 336 LMK 338 (480)
Q Consensus 336 ~m~ 338 (480)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=6.5e-06 Score=75.66 Aligned_cols=161 Identities=10% Similarity=-0.092 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND--K-D------VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRL---KPS--DI 210 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 210 (480)
.+...+..|...|++++|.+.+++..+ + . ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778888888888888865432 1 1 12234455667778899999999988875321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----ccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-H
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD-S 277 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~ 277 (480)
+++.+...|...|++++|...|+...+.....|+ ..++..+...|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999887732111232 257788888999999999999988876 11111 5
Q ss_pred hHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALG-EKIAEYLIS 305 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a-~~~~~~~~~ 305 (480)
.+|..+...+...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888999999999999 777887765
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=6.9e-07 Score=84.07 Aligned_cols=93 Identities=8% Similarity=-0.090 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...+++++++.|.+..++..+..++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 56777888888889999998888887 3344 578899999999999999999999999999999999999999999999
Q ss_pred cCChhHH-HHHHHHHH
Q 038395 324 IGNWDGV-ARVRTLMK 338 (480)
Q Consensus 324 ~g~~~~a-~~~~~~m~ 338 (480)
.|+.++| ...++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988 45666664
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=2.3e-06 Score=67.35 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGAC 287 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~ 287 (480)
..+..+...+...|++++|...++...... +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344455555556666666666666655321 223455566666666777777777766665 2223 466777788888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
...|+++.|...++++.+..|.++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877765
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=2.2e-06 Score=69.42 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556677788889999999988887 3344 57788888889999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=2.3e-06 Score=73.53 Aligned_cols=116 Identities=12% Similarity=0.000 Sum_probs=51.6
Q ss_pred hcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChH
Q 038395 53 KQGEVAAARV---LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE----KVEP-NEVTAVAVLSACGQIGALE 124 (480)
Q Consensus 53 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~~~~~~~~~~ 124 (480)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322223445555666666666666666666555431 1111 1233444444455555555
Q ss_pred HHHHHHHHHHHh---CCCCC--chhHHHHHHHHHHhCCCHHHHHHHHHh
Q 038395 125 SGRWIHSYIENS---RNIKV--NVQVGTALINMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 125 ~a~~~~~~~~~~---~~~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~ 168 (480)
+|...+....+. .+..+ ....+..+...|...|++++|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555555444332 01011 122344444445555555555444443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=2.3e-06 Score=67.78 Aligned_cols=113 Identities=8% Similarity=-0.013 Sum_probs=65.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444445555555544444421 0112344444555555555555555555544 2222 4566677777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
..|++++|...++++++..|.+...+..+..++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7788888888888888877777777777777776655
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=4.1e-06 Score=75.45 Aligned_cols=179 Identities=8% Similarity=-0.059 Sum_probs=83.7
Q ss_pred hcCCHHHHHHHHhhcCC--C-CHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 038395 53 KQGEVAAARVLFDDMEE--K-DVVCWNVM-------IDGYAQHGLANEALVLFRRMLAEKVEPNE--------------- 107 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--------------- 107 (480)
..++.+.|.+.|.+..+ | ....|+.+ ...+.+.++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46677777777777653 3 34566666 3445555555555555444433 22221
Q ss_pred -------HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-----hH
Q 038395 108 -------VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKD-----VV 175 (480)
Q Consensus 108 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~ 175 (480)
.........+...|++++|.+++..+... .|+......+...+.+.+++++|+..|+...... ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 11122333344455555555555444421 1222233444445555555555555555443311 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS--DITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555555555543221132 1123333334455555555555555554
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=5.4e-06 Score=71.17 Aligned_cols=148 Identities=16% Similarity=0.046 Sum_probs=105.7
Q ss_pred HhcCChHHHHH---HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------C---CHHHHHHHHHHHHHcCCh
Q 038395 21 ARGGDVLSAEK---LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE------K---DVVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 21 ~~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------~---~~~~~~~li~~~~~~g~~ 88 (480)
...|++++|.+ ++..-+.....++..+...|...|++++|...|++..+ . ...+++.+...|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46789999999 66554444567899999999999999999999988754 1 345788999999999999
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHhC---CCCC-chhHHHHHHHHHHhCCC
Q 038395 89 NEALVLFRRMLAE----KVEP--NEVTAVAVLSACGQIGALESGRWIHSYIENSR---NIKV-NVQVGTALINMYSKCGS 158 (480)
Q Consensus 89 ~~A~~~~~~m~~~----g~~p--d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~y~~~g~ 158 (480)
++|++.|++.... +-.| ....+..+...+...|++++|...++...+.. +.+. ...++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999987653 2122 23457778888999999999999998877530 1110 12234556666667777
Q ss_pred HHHHHHHHHh
Q 038395 159 LKDARLVFDR 168 (480)
Q Consensus 159 ~~~A~~~f~~ 168 (480)
+++|.+.|++
T Consensus 163 ~~~A~~~~~~ 172 (203)
T 3gw4_A 163 LLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666655
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=0.00027 Score=65.77 Aligned_cols=178 Identities=11% Similarity=0.014 Sum_probs=116.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 75 WNVMIDGYAQHGLANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIG-ALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 75 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
++.+-....+.+..++|++++.+++.. .| +...|+.--.++...+ .+++++.+++.+.+ ..+.+..+|+.-...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 333333444455667888888888874 44 4455666666666677 58888888888886 456677777777666
Q ss_pred HHhC-C-CHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038395 153 YSKC-G-SLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGK--------DALQLFNEMCRIRLKPSDITFIGLLSAC 219 (480)
Q Consensus 153 y~~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 219 (480)
+.+. + ++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-...+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL 211 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLR 211 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 6666 6 788888888888763 5567776555555555555 788888888776433 666666666666
Q ss_pred HccCC-------HHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCC
Q 038395 220 AHAGL-------VNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 220 ~~~g~-------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 260 (480)
.+.+. ++++.+.+..+... .| |...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 66664 56677766666632 33 35556555555555554
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=1.2e-06 Score=78.92 Aligned_cols=135 Identities=11% Similarity=-0.051 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC--ccHHHHHHHHH
Q 038395 178 NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK--VEHYGCMVNLL 255 (480)
Q Consensus 178 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 255 (480)
-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34455666677777777777666553 244334444444667777777777777654421 0 111 22455667777
Q ss_pred HHcCCHHHHHHHHHhC--C-CCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHH
Q 038395 256 SRAGQVEEAYKLVMDM--K-IEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLL 317 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m--~-~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 317 (480)
.+.|++++|++.|++. + ..|. ...+.....++...|+.++|...|+++...+|. ...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7788888888887776 2 1143 335566677788888888888888888888887 5444444
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=7e-06 Score=67.80 Aligned_cols=124 Identities=8% Similarity=-0.115 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+....+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345666666666677777777666666542 224555556666666666666666666666653 23344455555555
Q ss_pred HHhCCCHHHHHHHHHhcCC---CChHHHHH--HHHHHHhcCChHHHHHHHHH
Q 038395 153 YSKCGSLKDARLVFDRVND---KDVVVWNS--MIVGYAMHGFGKDALQLFNE 199 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m~~---~~~~~~~~--li~~~~~~g~~~~A~~l~~~ 199 (480)
|.+.|++++|...|++... .+...+.. ++..+...|++++|++.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555555555554432 12223322 22224444555555555544
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=3e-06 Score=64.68 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchhHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA--NSGTYVLLSNI 320 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 320 (480)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455667777788888888888888776 2233 5677888888888999999999999999999888 88888899999
Q ss_pred HHHc-CChhHHHHHHHHHHhCCC
Q 038395 321 YAAI-GNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 321 ~~~~-g~~~~a~~~~~~m~~~~~ 342 (480)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876643
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=2.6e-06 Score=71.73 Aligned_cols=119 Identities=6% Similarity=0.020 Sum_probs=71.7
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCCh--hH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGA-CRLHGNI--AL 295 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a-~~~~~~~--~~ 295 (480)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555554321 223455556666666666666666666655 2222 45556666666 5566776 77
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 296 GEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|...++++++..|.++..+..+..+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777777777777777777766543
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.5e-06 Score=66.40 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++.++..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556667777888888888888776 3334 577888888888889999999999999999999888888889999999
Q ss_pred cCChhHHHHHHHHHHhC
Q 038395 324 IGNWDGVARVRTLMKEK 340 (480)
Q Consensus 324 ~g~~~~a~~~~~~m~~~ 340 (480)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999888887654
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=2.1e-06 Score=67.44 Aligned_cols=96 Identities=10% Similarity=-0.095 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..+..+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677888999999999999888 4445 588899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 038395 324 IGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 324 ~g~~~~a~~~~~~m~~~~ 341 (480)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=7.8e-06 Score=63.59 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++.++..+..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999988 3233 57889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 038395 323 AIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~~ 341 (480)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.32 E-value=7.3e-06 Score=65.41 Aligned_cols=98 Identities=9% Similarity=-0.065 Sum_probs=80.2
Q ss_pred CCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++..|.++.++..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34566777777888888888888888776 3334 477888888888899999999999999999999888889999999
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 038395 321 YAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~~ 340 (480)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998888654
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=6.6e-06 Score=65.05 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=87.9
Q ss_pred CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038395 244 KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY 321 (480)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (480)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..+..+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3566788889999999999999999987 5555 6788999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 038395 322 AAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 322 ~~~g~~~~a~~~~~~m~~~ 340 (480)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 146
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=2.7e-06 Score=84.02 Aligned_cols=116 Identities=8% Similarity=-0.019 Sum_probs=89.9
Q ss_pred HHHccCCHHHHHHHHHHhhhhcCCcCC-ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChh
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYAIEPK-VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIA 294 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~ 294 (480)
.+...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445667788888888777743 343 667778888888888888888888877 4445 4778899999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHH--HHHcCChhHHHHHHHH
Q 038395 295 LGEKIAEYLISQNLANSGTYVLLSNI--YAAIGNWDGVARVRTL 336 (480)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 336 (480)
+|...++++++..|.+..++..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999988888887777 8889999999998874
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.28 E-value=8.8e-06 Score=62.62 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIG 325 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (480)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 444445555555555555555554 2222 34555555556666666666666666666666665556666666666666
Q ss_pred ChhHHHHHHHHHHh
Q 038395 326 NWDGVARVRTLMKE 339 (480)
Q Consensus 326 ~~~~a~~~~~~m~~ 339 (480)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666655544
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=2.3e-06 Score=78.23 Aligned_cols=93 Identities=11% Similarity=-0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 038395 74 CWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMY 153 (480)
Q Consensus 74 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y 153 (480)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+. .+.+...+..+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33444444444444444444444444321 113334444444444444444444444444431 222333444444444
Q ss_pred HhCCCHHHHHHHHHhc
Q 038395 154 SKCGSLKDARLVFDRV 169 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~m 169 (480)
...|++++|...|++.
T Consensus 83 ~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 83 LEMESYDEAIANLQRA 98 (281)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4444444444444443
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.00023 Score=65.81 Aligned_cols=228 Identities=9% Similarity=0.006 Sum_probs=135.8
Q ss_pred HcCChH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCC----------hHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 84 QHGLAN-EALVLFRRMLAEKVEPNE-VTAVAVLSACGQIGA----------LESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 84 ~~g~~~-~A~~~~~~m~~~g~~pd~-~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+.|.++ +|++++..++.. .|+. ..|+.--......+. ++++..+++.+... .+.+..+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 455544 678888887764 4543 334433333322222 56777777777763 4567777777777
Q ss_pred HHHhCC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 038395 152 MYSKCG--SLKDARLVFDRVND---KDVVVWNSMIVGYAMHGF-GKDALQLFNEMCRIRLKPSDITFIGLLSACAHA--- 222 (480)
Q Consensus 152 ~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 222 (480)
.+.+.| .+++++.+++++.+ +|..+|+--.-.+...|. ++++++.+.++.+..+. |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 777777 37788888877764 466777777777777777 47888888888876433 555555544443333
Q ss_pred -----------CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHh
Q 038395 223 -----------GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRA-----------GQVEEAYKLVMDM-KIEPDSV 278 (480)
Q Consensus 223 -----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~ 278 (480)
+.++++.+.+...... .| |...|+-+--.+.+. +.++++++.++++ ...||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 3466677777766632 34 345555444444443 3466677776666 445553
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 279 LWGTLLGAC-----RLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 279 ~~~~li~a~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
.|..+..+. ...+..++....+.++++++|....-|.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 343222211 134556677777777777777766555554433
No 150
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.27 E-value=0.0006 Score=67.38 Aligned_cols=122 Identities=10% Similarity=-0.010 Sum_probs=65.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHhHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG-QVEEAYKLVMDM--KIEPDSVLWGTLLGAC 287 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~li~a~ 287 (480)
.|...+....+.+..+.|..+|+.. +..+ .+...|......-.+.+ +.+.|..+|+.. ...-++..|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444555555556677777777766 2211 12223322222222222 467777777665 1111234455556655
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 288 RLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
...|+.+.|..+++++ +.....|...+..-...|+.+.+.++++++.+
T Consensus 365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777777777765 22334555555555666777777776666653
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.1e-05 Score=69.34 Aligned_cols=172 Identities=9% Similarity=-0.051 Sum_probs=101.2
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038395 149 LINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLV 225 (480)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 225 (480)
.+......|++++|.+.++.-... ....|..+...+.+.|++++|+..|++..+.. |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 333444556666666666543321 34566677777778888888888888777632 211100000 00
Q ss_pred HHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 226 NEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 226 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
+.-. .. .....+..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01245666777788888888888888776 3334 5778888999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHcCChhHHH-HHHHHHHhCC
Q 038395 304 ISQNLANSGTYVLLSNIYAAIGNWDGVA-RVRTLMKEKG 341 (480)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 341 (480)
++..|.+..++..+..++...++.+++. ..+..|...+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999889999999998888887776 5555554443
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=1.6e-05 Score=62.39 Aligned_cols=93 Identities=8% Similarity=-0.068 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 038395 73 VCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINM 152 (480)
Q Consensus 73 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 152 (480)
..|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...+....+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 344555555555555555555555554431 223444444555555555555555555555443 22233444444444
Q ss_pred HHhCCCHHHHHHHHHh
Q 038395 153 YSKCGSLKDARLVFDR 168 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~ 168 (480)
|.+.|++++|...|++
T Consensus 90 ~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4444444444444444
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=1.2e-05 Score=67.44 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=91.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHH-HHHcCCH--
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNL-LSRAGQV-- 261 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 261 (480)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677788888888777653 2356677778888888888888888888877431 2345566777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 262 EEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
++|...+++. ...| +...|..+...+...|+++.|...++++++..|+++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 8888888877 3334 46778888888999999999999999999999887543
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=7.3e-06 Score=68.03 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAI 324 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (480)
.+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.++..|..+..+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4444555555566666666655554 2223 4555666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 038395 325 GNWDGVARVRTLMKEK 340 (480)
Q Consensus 325 g~~~~a~~~~~~m~~~ 340 (480)
|++++|.+.+++..+.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6666666666665543
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.3e-05 Score=64.73 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33444445555555555555555554 33444 34555555555555666666666666666555555555555566
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 038395 321 YAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 321 ~~~~g~~~~a~~~~~~m~~ 339 (480)
|...|++++|...+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666555544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=1.7e-05 Score=60.90 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...++...... +.+...+..+...|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444445555555555555555554321 123445555555666666666666666555 2223 4566677777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
..|++++|...++++.+..|.++..+..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777778777777777777776555554433
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.3e-05 Score=63.19 Aligned_cols=108 Identities=9% Similarity=-0.093 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTL 283 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 283 (480)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444555555555555555555542 2333 345555666666666777776666655 2233 46677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038395 284 LGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNI 320 (480)
Q Consensus 284 i~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 320 (480)
..++...|++++|...++++++..|.+...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7888888888888888888888888776665555444
No 158
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.21 E-value=1.7e-05 Score=74.48 Aligned_cols=133 Identities=10% Similarity=-0.034 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHH
Q 038395 57 VAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----------------EVTAVAVLSAC 117 (480)
Q Consensus 57 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~~~ 117 (480)
+++|...|+...+ | +...|..+...|.+.|++++|+..|++..+.. |+ ...+..+..++
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444332 2 45578888888888899999999888887752 33 24555555555
Q ss_pred HccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 118 GQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
.+.|++++|...++.+.+. .+.+...+..+..+|...|++++|...|++..+ .+...+..+...+.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543 233444445555555555555555555544432 2334444444444444444444
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.21 E-value=6.2e-06 Score=67.29 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGA 286 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a 286 (480)
..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.|++. ...| ++..|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34445555666677777777777766632 33 4555666667777777777777777766 3334 45677777788
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
+...|++++|...++++++..|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 888888888888888888888776544
No 160
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=2.1e-05 Score=64.24 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEE--K-DVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 120 (480)
|..+...+.+.|++++|...|++..+ | +...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 33344444444444444444444331 1 23344444444444444444444444443321 11233333344444444
Q ss_pred CChHHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIE 134 (480)
Q Consensus 121 ~~~~~a~~~~~~~~ 134 (480)
|++++|...++...
T Consensus 118 g~~~eA~~~~~~al 131 (151)
T 3gyz_A 118 KAPLKAKECFELVI 131 (151)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.6e-05 Score=62.57 Aligned_cols=107 Identities=8% Similarity=-0.100 Sum_probs=63.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444445555566666666665555321 223455566666666666666666666655 2233 3566777777777
Q ss_pred hcCChhHHHHHHHHHHHcC------CCCchhHHHHHH
Q 038395 289 LHGNIALGEKIAEYLISQN------LANSGTYVLLSN 319 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 319 (480)
..|++++|...++++++.. |.+......+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7788888888888777777 655544444443
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=1.2e-05 Score=64.93 Aligned_cols=100 Identities=10% Similarity=-0.043 Sum_probs=62.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACR 288 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~ 288 (480)
+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|++. ...| ++..|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444555666666666666666532 23 3455556666666666666666666665 2233 3556667777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
..|++++|...++++++..|.++...
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 77888888888887777777665443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=9.2e-06 Score=64.28 Aligned_cols=93 Identities=8% Similarity=-0.024 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-------hhHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS-------GTYVLL 317 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l 317 (480)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|.+. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556777888888888888888876 4445 477888899999999999999999999998877543 356778
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 038395 318 SNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8889999999999999988765
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.17 E-value=3.5e-06 Score=72.44 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 52 AKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
...|+++.|.+.|+.-.+. ....|..+...+.+.|++++|++.|++....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555433221 2345666666677777777777777776653
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=3.4e-05 Score=76.11 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=66.8
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038395 150 INMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVN 226 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 226 (480)
...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345566777777777765542 345666677777777777777777777766642 223455666666666777777
Q ss_pred HHHHHHHHhhhhcCCcCC-ccHHHHHHHH--HHHcCCHHHHHHHHH
Q 038395 227 EGRRFFNTMKDEYAIEPK-VEHYGCMVNL--LSRAGQVEEAYKLVM 269 (480)
Q Consensus 227 ~a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 269 (480)
+|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777666643 232 3334444433 556666666666666
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4.7e-05 Score=73.89 Aligned_cols=162 Identities=13% Similarity=-0.003 Sum_probs=93.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch----hHHHHHHHHHHhCCCHHHHHHHHHhcCC--------C-ChHH
Q 038395 110 AVAVLSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCGSLKDARLVFDRVND--------K-DVVV 176 (480)
Q Consensus 110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~m~~--------~-~~~~ 176 (480)
+..+...|...|+++++.+.+..+.+..+-.++. .+.+.+...+...|+++.|..+++.... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555555555555555444321111111 1222233333445666666666654431 1 1345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC-----cc
Q 038395 177 WNSMIVGYAMHGFGKDALQLFNEMCRI--RL--KPS-DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK-----VE 246 (480)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~ 246 (480)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..+++.......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777888888888888888776542 11 121 346777788888889999998888876642111122 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566666777888888887776655
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.15 E-value=2.2e-05 Score=65.09 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 038395 209 DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLG 285 (480)
Q Consensus 209 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 285 (480)
...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|...|++. .+.| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345555666666777777777777766642 23 4566677777777788888887777776 3344 4778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchhHHH
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLANSGTYVL 316 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 316 (480)
++...|++++|...+++++++.|.+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 9999999999999999999999988765543
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.14 E-value=0.00023 Score=66.19 Aligned_cols=215 Identities=13% Similarity=0.075 Sum_probs=152.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG-SLKDARLVFDRVND---KDVVVWNSMIVGYAMH-G-FGKDAL 194 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~-g-~~~~A~ 194 (480)
...++|+++.+.++.. .+.+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 4456889999999874 4556677888777888888 59999999998864 4778898887777776 7 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC------
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVN--------EGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ------ 260 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------ 260 (480)
++++++.+...+ |...|..-.-...+.|..+ ++.+.++.+.+.. .-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchH
Confidence 999999875432 5666655444444444444 8888999888541 3356677777777777776
Q ss_pred -HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHcC------CCCc
Q 038395 261 -VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNI--------------------ALGEKIAEYLISQN------LANS 311 (480)
Q Consensus 261 -~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~--------------------~~a~~~~~~~~~~~------~~~~ 311 (480)
++++++.+++. ...| |...|+-+-..+.+.|.. .........+.... +..+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888776 4445 678888777777766654 12222222222222 3455
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 312 GTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
.+...|+.+|...|+.++|.++++.+.++
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 56778999999999999999999998643
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=1.7e-05 Score=62.47 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEPD-S---VLWGTLLGACRLHGNIALGEKIAEYLISQNLAN---SGTYVLLSNIYA 322 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 322 (480)
+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666665 22232 2 355566666677777777777777777777666 555666777777
Q ss_pred HcCChhHHHHHHHHHHhC
Q 038395 323 AIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~~~ 340 (480)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766553
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=1.5e-05 Score=78.26 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=76.5
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|++++++.|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357778888899999999999999887 3344 57889999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHH-HHHHHHh
Q 038395 323 AIGNWDGVAR-VRTLMKE 339 (480)
Q Consensus 323 ~~g~~~~a~~-~~~~m~~ 339 (480)
+.|+.+++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988764 4555543
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=9.1e-05 Score=58.14 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=61.4
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCc----cHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKV----EHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD----SVLWGTLLGA 286 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~a 286 (480)
...+...|++++|...|+.+.+. .|+. ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566666666666666543 2322 25555666666777777777766665 22232 4556677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 287 CRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
+...|++++|...++++++..|+++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888888887654433
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=4.3e-05 Score=63.08 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 277 SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 277 ~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
...|..+..++...|+++.|...++++++.+|.++.+|..+..+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577788888888899999999999999988888888888899999999999999888887654
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=2.3e-05 Score=61.46 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chhHHH
Q 038395 246 EHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN-------SGTYVL 316 (480)
Q Consensus 246 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 316 (480)
..+..+...+...|++++|...|++. ... .+...+..+...+...|++++|...++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777778888888888888776 222 357778888888889999999999999998877655 678888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 038395 317 LSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.04 E-value=4.3e-05 Score=60.83 Aligned_cols=100 Identities=8% Similarity=-0.174 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 038395 208 SDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLG 285 (480)
Q Consensus 208 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 285 (480)
+...+..+...+...|++++|...|....... +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555556666666666666555321 122445556666666666666666666655 2223 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCC
Q 038395 286 ACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 286 a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
++...|+++.|...++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777776665
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=2.6e-05 Score=63.45 Aligned_cols=63 Identities=10% Similarity=-0.075 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCchhH----HHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQ-------NLANSGTY----VLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
..|..+..++...|++++|+..+++++++ +|++..+| .....++...|++++|...|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888888999999999999999999998 99988888 99999999999999999999988654
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=7e-06 Score=63.81 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHH
Q 038395 258 AGQVEEAYKLVMDM-KI---EP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
.|++++|...|++. .. .| +...|..+...+...|++++|...++++++..|+++.++..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555566666555 33 13 245566666666666777777777777777666666666666667777777777776
Q ss_pred HHHHHHh
Q 038395 333 VRTLMKE 339 (480)
Q Consensus 333 ~~~~m~~ 339 (480)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=2.4e-05 Score=59.43 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=55.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP---DSVLWGTLLGAC 287 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~a~ 287 (480)
+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3344444555555555555555554321 122344555555666666666666666555 2223 356666677777
Q ss_pred Hhc-CChhHHHHHHHHHHHcCCCC
Q 038395 288 RLH-GNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 288 ~~~-~~~~~a~~~~~~~~~~~~~~ 310 (480)
... |++++|.+.++++.+..|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 777 77777777777777766654
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=4.8e-05 Score=60.03 Aligned_cols=60 Identities=5% Similarity=-0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
+|..+...+.+.|++++|++.|++..+.. +-+...|..+..++...|++++|...++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444555555555555555544421 1123344444445555555555555554444
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00016 Score=70.12 Aligned_cols=161 Identities=7% Similarity=-0.099 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HH
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRVND-----KDV----VVWNSMIVGYAMHGFGKDALQLFNEMCR----IRLKPS-DI 210 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ 210 (480)
.+..+...|.+.|++++|.+.+..+.. ++. .+.+.+-..+...|+.++|.+++++... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356788999999999999999987753 111 2334444455567899999999988754 233333 45
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--H
Q 038395 211 TFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEPD--S 277 (480)
Q Consensus 211 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~ 277 (480)
++..+...+...|++++|..+++.+.....-..+ ...+..++..|...|++++|..++++. +..|. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778888999999999999999987654322222 457888899999999999999998776 21111 3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..+..+...+...++++.|...+.++.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666777788999999998888876
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=5.8e-05 Score=61.51 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------CCchh
Q 038395 248 YGCMVNLLSRAGQVEEAYKLVMDM----KIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNL------ANSGT 313 (480)
Q Consensus 248 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~------~~~~~ 313 (480)
+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++.++..+ .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444444455555554444443 00011 34555666667777777777777777766321 11345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 314 YVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
+..+...|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67788888888888888888877654
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=2.5e-05 Score=61.32 Aligned_cols=110 Identities=5% Similarity=-0.072 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHH
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLL 255 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 255 (480)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 45555555555666666666666555432 2233444444555555555555555555544221 10
Q ss_pred HHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 038395 256 SRAGQVEEAYKLVMDMKIEPD----SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLS 318 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 318 (480)
..++ ..+|..+..++...|+++.|...++++.+..| ++.....+.
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 0111 44555666666666667777777766666665 333333333
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=5.1e-05 Score=74.67 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=100.4
Q ss_pred HHHccCCHHHHHHHHHHhhhhcC--CcC---C-ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHH
Q 038395 218 ACAHAGLVNEGRRFFNTMKDEYA--IEP---K-VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEPD-SVLWG 281 (480)
Q Consensus 218 a~~~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 281 (480)
.+...|++++|..++++..+... +.| + ..+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999887764321 222 2 557899999999999999999988876 34455 56789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchh---HHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 282 TLLGACRLHGNIALGEKIAEYLIS-----QNLANSGT---YVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 282 ~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.|...|...|++++|+.+++++++ +||+.+.+ ...|..++...|++++|..++..+++.-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987 67876554 45788888999999999999999987643
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=4.2e-05 Score=62.37 Aligned_cols=95 Identities=14% Similarity=0.031 Sum_probs=48.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhH
Q 038395 212 FIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM-------KIEP-DSVL 279 (480)
Q Consensus 212 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~ 279 (480)
+..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 333444444445555555544444321100011 223444555555666666665555544 1111 1345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQ 306 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~ 306 (480)
+..+...+...|++++|...+++.++.
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666677777778888888877777663
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=6.8e-05 Score=71.28 Aligned_cols=88 Identities=6% Similarity=-0.080 Sum_probs=77.2
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|.+...+..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 5556 47888999999999999999999999999999999888889998888
Q ss_pred HcCChhHHHH
Q 038395 323 AIGNWDGVAR 332 (480)
Q Consensus 323 ~~g~~~~a~~ 332 (480)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.94 E-value=0.0037 Score=57.74 Aligned_cols=217 Identities=12% Similarity=-0.004 Sum_probs=150.6
Q ss_pred ccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCC----------HHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038395 119 QIGAL-ESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGS----------LKDARLVFDRVND---KDVVVWNSMIVGY 184 (480)
Q Consensus 119 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~f~~m~~---~~~~~~~~li~~~ 184 (480)
+.|.+ ++|..+.+.+... .|.+..+|+.--..+...+. +++++.+++.+.. ++..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44544 5788999988853 33445556554444433333 6788888887754 5778999888888
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHc---
Q 038395 185 AMHGF--GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL-VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRA--- 258 (480)
Q Consensus 185 ~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--- 258 (480)
.+.|+ +++++++++++.+...+ |...|+.-.-.+...|. .+++.+.+..+.+.. +-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhc
Confidence 88884 89999999999986533 66777766666677787 689999999998542 33466676666666554
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCchhH
Q 038395 259 -----------GQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH-----------GNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 259 -----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
+.++++++.+++. ...| |...|+-+-..+... +-++++.+.++++++..|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888877 3344 577787655555444 357899999999999999985554
Q ss_pred HHHHHHH---HHcCChhHHHHHHHHHHhC
Q 038395 315 VLLSNIY---AAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 315 ~~l~~~~---~~~g~~~~a~~~~~~m~~~ 340 (480)
..++... ...|..+++...+.++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4443222 2456777888888888754
No 186
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=5.1e-05 Score=59.32 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=59.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 038395 214 GLLSACAHAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH 290 (480)
Q Consensus 214 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~ 290 (480)
.+...+.+.|++++|...|+...+. .| +...+..+..++.+.|++++|...|++. .+.| +...|..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556667777777777666643 33 3555666666777777777777777665 3344 356677777777777
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 038395 291 GNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~ 310 (480)
|++++|...++++++..|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 77888888887777777754
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=2.2e-05 Score=60.95 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHHhhhhcCC-cC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHH
Q 038395 222 AGLVNEGRRFFNTMKDEYAI-EP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGE 297 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~ 297 (480)
.|++++|...|+...+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666531 10 12 2455666667777777777777777766 3334 4667777888888888888888
Q ss_pred HHHHHHHHcCCCCchh
Q 038395 298 KIAEYLISQNLANSGT 313 (480)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (480)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888776543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=2.9e-05 Score=72.92 Aligned_cols=147 Identities=8% Similarity=-0.133 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHH
Q 038395 174 VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVN 253 (480)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 253 (480)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456777777888888999999999887763 454332 22333444433222 1 126777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHH-HHcCChhHH
Q 038395 254 LLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIY-AAIGNWDGV 330 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a 330 (480)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++++++.|.+..++..|.... ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888877 3344 5778888888999999999999999999988888877777777663 344566777
Q ss_pred HHHHHHHHhC
Q 038395 331 ARVRTLMKEK 340 (480)
Q Consensus 331 ~~~~~~m~~~ 340 (480)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777777554
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=7.8e-05 Score=61.49 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 456777888888899999999888877 3344 477888899999999999999999999999999876
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.0016 Score=65.50 Aligned_cols=168 Identities=8% Similarity=-0.029 Sum_probs=123.2
Q ss_pred HHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 038395 159 LKDARLVFDRVND---KDVVVWNSMIVGYAMHGF----------GKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG-- 223 (480)
Q Consensus 159 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 223 (480)
-++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3556777766653 355667766666666666 78888888888875433 5566766666677777
Q ss_pred CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----------
Q 038395 224 LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG-QVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLH---------- 290 (480)
Q Consensus 224 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~---------- 290 (480)
+++++.+.++.+.+.. +-+...|+.-.-++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6688888888888531 234566776667777778 788888888887 4455 577888777766653
Q ss_pred ----CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhH
Q 038395 291 ----GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDG 329 (480)
Q Consensus 291 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (480)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999988887554
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=7.3e-05 Score=70.17 Aligned_cols=149 Identities=12% Similarity=0.027 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND--KDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACA 220 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 220 (480)
...+..+...|.+.|++++|...|++... ++.. .+...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788889999999999999998654 2221 1222333344333221 135677777888
Q ss_pred ccCCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHH-HHhcCChhHH
Q 038395 221 HAGLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPD-SVLWGTLLGA-CRLHGNIALG 296 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~a-~~~~~~~~~a 296 (480)
+.|++++|...++...+. .| +...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888743 34 4667788888888888888888888887 55554 4445544444 2344567778
Q ss_pred HHHHHHHHHcCCCCc
Q 038395 297 EKIAEYLISQNLANS 311 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~ 311 (480)
...+.+++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888888888777653
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.73 E-value=6.7e-05 Score=61.06 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCC-HhHH----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-K-------IEPD-SVLW----GTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655554 3 3776 5678 889999999999999999999999999877644
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00026 Score=69.40 Aligned_cols=118 Identities=6% Similarity=-0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPN----------------EVTAVAVLSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (480)
...|..+...|.+.|++++|+..|++.++. .|+ ...|..+..++.+.+++++|...++.+.+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456788888888899999999998888764 222 24444444455555555555555555544
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 193 (480)
. .+.+...+..+..+|.+.|++++|...|++..+ .+...|..+...+.+.++.++|
T Consensus 346 ~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 L--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred c--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 222344444444444444555555444444432 1233444444444444444433
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00016 Score=55.69 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=62.7
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 263 EAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 263 ~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+|.+.|++. ...| +...|..+...+...|++++|...++++++..|.+..++..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3444 47788888888888999999999999999999988888889999999999999999998887654
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00024 Score=53.15 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=59.5
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|..+...+...|++++|...++++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788899999999999999999999999999999999999999999999999999999887654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=9.7e-05 Score=56.12 Aligned_cols=90 Identities=16% Similarity=0.028 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------chhHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN------SGTYVL 316 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 316 (480)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666777788888888888888776 3334 57788888889999999999999999999999887 566777
Q ss_pred HHHHHHHcCChhHHHHHH
Q 038395 317 LSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 317 l~~~~~~~g~~~~a~~~~ 334 (480)
+..++...|+.+.|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 777777777766665544
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00041 Score=50.30 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038395 245 VEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYA 322 (480)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (480)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666667777788888888877776 2233 46778888888888899999999999998888888888888777776
Q ss_pred HcC
Q 038395 323 AIG 325 (480)
Q Consensus 323 ~~g 325 (480)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.63 E-value=0.00045 Score=65.61 Aligned_cols=118 Identities=9% Similarity=-0.015 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEE-------------------KDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
.|..+...+.+.|++++|+..|++..+ .+...|+.+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 466666677777777777777766543 134466667777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 163 (480)
+.+...+..+..++...|++++|...++.+.+. .+.+...+..+...+.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224556666666677777777777777766654 2334555555555555555555543
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.57 E-value=0.00067 Score=66.66 Aligned_cols=115 Identities=11% Similarity=-0.024 Sum_probs=87.7
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCc---hhHH
Q 038395 254 LLSRAGQVEEAYKLVMDM---------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANS---GTYV 315 (480)
Q Consensus 254 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~---~~~~ 315 (480)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 23344 56889999999999999999999999887 566654 4678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 038395 316 LLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKA 386 (480)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 386 (480)
.|...|..+|++++|..++++..+--.. .-...||...+...++.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987542110 0023488888888877776655543
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=0.0008 Score=65.07 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCc---hh
Q 038395 252 VNLLSRAGQVEEAYKLVMDM---------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANS---GT 313 (480)
Q Consensus 252 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~---~~ 313 (480)
+..+.+.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|..+ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999988766 11222 46789999999999999999999999887 456554 46
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 038395 314 YVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLK 385 (480)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 385 (480)
++.|...|..+|++++|..++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987542110 012348999998888888777665
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00017 Score=54.67 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCc-------hh
Q 038395 72 VVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVN-------VQ 144 (480)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 144 (480)
...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 4556666677777777777777777766642 235566666666777777777777777776642 332 34
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc
Q 038395 145 VGTALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 145 ~~~~li~~y~~~g~~~~A~~~f~~m 169 (480)
.+..+..++...|+.+.|...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4445555555555555555554444
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.43 E-value=0.00016 Score=58.69 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038395 256 SRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGN----------IALGEKIAEYLISQNLANSGTYVLLSNIYAA 323 (480)
Q Consensus 256 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (480)
.+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3556677777777766 3344 46777777777776665 4599999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 038395 324 IG-----------NWDGVARVRTLMKEKG 341 (480)
Q Consensus 324 ~g-----------~~~~a~~~~~~m~~~~ 341 (480)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999987754
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.0013 Score=48.32 Aligned_cols=69 Identities=7% Similarity=-0.066 Sum_probs=60.8
Q ss_pred CCCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 274 EPDSVLWGTLLGACRLHGN---IALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 274 ~p~~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...+...+...|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888866555 69999999999999999999999999999999999999999999987654
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0013 Score=63.42 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCc---hhHHHHHH
Q 038395 258 AGQVEEAYKLVMDM---------KIEPD-SVLWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANS---GTYVLLSN 319 (480)
Q Consensus 258 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~~ 319 (480)
.|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57888888888765 22344 46789999999999999999999999987 566554 46788999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 038395 320 IYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 320 ~~~~~g~~~~a~~~~~~m~~ 339 (480)
.|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998754
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.15 E-value=0.0024 Score=50.96 Aligned_cols=111 Identities=10% Similarity=-0.094 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHH----cCCHHH
Q 038395 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSR----AGQVEE 263 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 263 (480)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777766665 33332 444555556666666666666532 234455555555555 555666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038395 264 AYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEKIAEYLISQN 307 (480)
Q Consensus 264 A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~~~~~~~~~~ 307 (480)
|.++|++.-...++..+..|...|.. .++.++|...+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666555112344445555555555 455555555555555544
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.0021 Score=46.40 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=59.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+...|..+...+...|++++|...++++++..|.++.++..+..+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999998764
No 207
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.11 E-value=0.06 Score=41.60 Aligned_cols=139 Identities=9% Similarity=0.113 Sum_probs=96.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHH
Q 038395 186 MHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAY 265 (480)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 265 (480)
..|..++..++..+..... +..-|+-++.-....-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 3566666666666665432 3334444444444444445555555555433222 2466777777
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 266 KLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 266 ~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..+-.++ .+.......+......|.-+.-.++...+....++++.....+.++|.+.|+..+|.+++.+.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7666665 355666777888999999999999999987778888889999999999999999999999999999985
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0072 Score=48.08 Aligned_cols=113 Identities=6% Similarity=-0.055 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChhHHHH
Q 038395 223 GLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRL----HGNIALGEK 298 (480)
Q Consensus 223 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~----~~~~~~a~~ 298 (480)
++.++|..+|+...+. + .|. .. |...|...+.+++|.++|++.-...++..+..|...|.. .++.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998853 4 233 33 777888888999999999988323578888888888888 899999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCc
Q 038395 299 IAEYLISQNLANSGTYVLLSNIYAA----IGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 343 (480)
.+++..+.+ ++.++..|..+|.. .++.++|.+.+++..+.|.+
T Consensus 83 ~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 83 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999999874 56788999999999 89999999999999888753
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.05 E-value=0.00069 Score=54.93 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=48.6
Q ss_pred HHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCh
Q 038395 261 VEEAYKLVMDM-KIEPD-SVLWGTLLGACRLH-----------GNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNW 327 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~-~~~~~~li~a~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (480)
+++|+..|++. .+.|+ ...|..+..+|... |++++|...|+++++++|++. .|...+. ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLE------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHH------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHH------HH
Confidence 45677666666 44554 56677777777765 489999999999999999885 3322222 23
Q ss_pred hHHHHHHHHHHhCC
Q 038395 328 DGVARVRTLMKEKG 341 (480)
Q Consensus 328 ~~a~~~~~~m~~~~ 341 (480)
++|.+++-.+...+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 55556555555443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.04 Score=57.83 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=56.4
Q ss_pred HHHhcCChHHHHH-HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 038395 19 LYARGGDVLSAEK-LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRR 97 (480)
Q Consensus 19 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 97 (480)
.....+++++|.+ ++..++. ......++..+.+.|..+.|.++.+.- + .-.....+.|++++|+++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~---~-----~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQ---D-----QKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCH---H-----HHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCc---c-----hheehhhhcCCHHHHHHHHHh
Confidence 3345778888877 6644441 112266666666677777766654321 0 112233455666666665432
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 038395 98 MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIE 134 (480)
Q Consensus 98 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 134 (480)
+ .+...|..+...+.+.++++.|.+.|..+.
T Consensus 678 ~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 678 E------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred h------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 345566666666666666666666666553
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.0044 Score=59.84 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=73.3
Q ss_pred ccCCHHHHHHHHHHhhhhc--CCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HhHHHHHH
Q 038395 221 HAGLVNEGRRFFNTMKDEY--AIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEPD-SVLWGTLL 284 (480)
Q Consensus 221 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li 284 (480)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999888776432 12232 467889999999999999999998876 34455 56789999
Q ss_pred HHHHhcCChhHHHHHHHHHHH-----cCCCCchh
Q 038395 285 GACRLHGNIALGEKIAEYLIS-----QNLANSGT 313 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 313 (480)
..|...|++++|+.+++++++ .||+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 57777644
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0075 Score=58.21 Aligned_cols=101 Identities=10% Similarity=-0.033 Sum_probs=77.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcC--CcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-Hh
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYA--IEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM---------KIEPD-SV 278 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 278 (480)
.+..+.+.|++++|..+++...+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556677899999999988764321 2222 456888899999999999999988876 34454 56
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchhHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLIS-----QNLANSGTYV 315 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 315 (480)
+++.|...|...|++++|+.+++++++ .||+.+.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 789999999999999999999999887 6787765443
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.95 E-value=0.034 Score=55.77 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC
Q 038395 88 ANEALVLFRRMLAEKVEP-NEVTAVAVLSACGQIGA----------LESGRWIHSYIENSRNIKVNVQVGTALINMYSKC 156 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~p-d~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 156 (480)
.++|++.++++... .| +...|+.--.++...++ ++++...++.+.+. .+.+..+|+.-...+.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 45566666666663 33 33344444444444444 56666666666653 344555666555566666
Q ss_pred C--CHHHHHHHHHhcCC---CChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------
Q 038395 157 G--SLKDARLVFDRVND---KDVVVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHA-------- 222 (480)
Q Consensus 157 g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-------- 222 (480)
| +++++.+.++++.+ +|..+|+--...+.+.| .++++++.++++.+..+. |...|......+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6 45666666666543 35556666555555666 566666666666554322 444444433333331
Q ss_pred ------CCHHHHHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCH
Q 038395 223 ------GLVNEGRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 223 ------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 261 (480)
+.++++.+.+..+... .| +...|.-+-..+.+.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCc
Confidence 3456666666665532 33 355566555555555553
No 214
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.93 E-value=0.0048 Score=47.01 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhcCCcC-CccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038395 228 GRRFFNTMKDEYAIEP-KVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLI 304 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~ 304 (480)
+...|+...+ ..| +...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555542 123 3455666666667777777777776665 2233 35667777777777777777777777777
Q ss_pred HcCC
Q 038395 305 SQNL 308 (480)
Q Consensus 305 ~~~~ 308 (480)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7655
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0045 Score=45.98 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVND---KDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444444444322 12334444444444444444444444443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.074 Score=55.79 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=46.1
Q ss_pred HhcCCHHHHHH-HHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 038395 52 AKQGEVAAARV-LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 52 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.+. .. .-+......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHH
Confidence 34566666666 4433330 11225555666666666666654321 10 0112233445555555543
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 169 (480)
+. ..+...|..|..++.+.|+++.|.+.|.++
T Consensus 676 ~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 21 123445555555555555555555555443
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.85 E-value=0.011 Score=47.24 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=72.3
Q ss_pred HHHHHHHhC--CCCCCHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHcCChhHHHHHHH
Q 038395 263 EAYKLVMDM--KIEPDSVLWGTLLGACRLHG---NIALGEKIAEYLISQN-L-ANSGTYVLLSNIYAAIGNWDGVARVRT 335 (480)
Q Consensus 263 ~A~~~~~~m--~~~p~~~~~~~li~a~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (480)
.+.+-|.+. .-.++..+.-.+..++.+.+ ++++|..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 344444443 12367777777778888877 6668999999988887 6 345677788888899999999999998
Q ss_pred HHHhCCCccCCceeeEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 336 LMKEKGVQKEPGCSSIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 336 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
.+.+. .|...++......+.+.+.+.|++
T Consensus 96 ~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 96 GLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp HHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 88764 344455555555566777777765
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.77 E-value=0.039 Score=51.32 Aligned_cols=137 Identities=9% Similarity=-0.021 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc----cC-C---HHHHHHHHHHhhh
Q 038395 172 KDVVVWNSMIVGYAM--HG---FGKDALQLFNEMCRIRLKPSD-ITFIGLLSACAH----AG-L---VNEGRRFFNTMKD 237 (480)
Q Consensus 172 ~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~----~g-~---~~~a~~~~~~m~~ 237 (480)
.+...|...+.+... .+ ...+|..+|++..+. .|+- ..+..+.-++.. .+ . .......+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 466777777765443 23 346888888888874 5553 334333333320 00 0 0000011111100
Q ss_pred hcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 238 EYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 238 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
....+.+...|.++.-.+...|++++|...++++ .+.|+...|..+...+...|+.++|...++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011223444444444444445555555555554 233444444444445555555555555555555555543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.73 E-value=0.012 Score=43.20 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 251 MVNLLSRAGQVEEAYKLVMDM-KIEP-DSV-LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888899998888877 3344 456 788888899999999999999999999999887665
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.57 E-value=0.0081 Score=44.17 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=54.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCch-hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 283 LLGACRLHGNIALGEKIAEYLISQNLANSG-TYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 283 li~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
....+...|++++|...++++++..|.++. .+..+..+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999998 99999999999999999999999988654
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.41 E-value=0.072 Score=49.53 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 173 DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555544555566666666666665543 555555555555556666666666665555
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.31 Score=40.00 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=82.5
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 150 INMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
.+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788888888887766 4567888888888888888888888887643 333444455567766655
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYL 303 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~ 303 (480)
.+-+....+ | -++.....+.-.|+++++.++|.+.+.-|.... ....+|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 544433321 1 245556667778888888888888764332221 122355666666665544
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.63 Score=38.14 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=58.8
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 038395 51 YAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIH 130 (480)
Q Consensus 51 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 130 (480)
..++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34577777777776665 3456777777777777777777777766533 333444444556665555444
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 038395 131 SYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVN 170 (480)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 170 (480)
+..... |- ++.....+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 443332 21 2333444445566666666665543
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.79 E-value=0.059 Score=40.16 Aligned_cols=69 Identities=6% Similarity=-0.068 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-----K----IEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++..|.++.+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445556666666666666666554 1 1234677888899999999999999999999999998865543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.61 E-value=0.066 Score=39.03 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=44.9
Q ss_pred CCccHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 243 PKVEHYGCMVNLLSRAGQ---VEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345556666666654443 57777777766 3344 3566666777777888888888888888887776
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.57 E-value=0.054 Score=48.32 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=68.6
Q ss_pred HHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCC-CchhHHHHHHHHHHc-CChhH
Q 038395 261 VEEAYKLVMDM-KIEPD---SVLWGTLLGACRL-----HGNIALGEKIAEYLISQNLA-NSGTYVLLSNIYAAI-GNWDG 329 (480)
Q Consensus 261 ~~~A~~~~~~m-~~~p~---~~~~~~li~a~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 329 (480)
...|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+ +..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666665 55666 5678888888888 49999999999999999996 488999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 038395 330 VARVRTLMKEKGVQKEPG 347 (480)
Q Consensus 330 a~~~~~~m~~~~~~~~~~ 347 (480)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876653343
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.07 E-value=0.17 Score=38.93 Aligned_cols=65 Identities=6% Similarity=-0.118 Sum_probs=33.7
Q ss_pred CCHhHHHHHHHHHHhcCChhH---HHHHHHHHHHcC-C-CCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 275 PDSVLWGTLLGACRLHGNIAL---GEKIAEYLISQN-L-ANSGTYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
|+..+--.+..++.++.+... +..+++.+.+.+ | ........|+-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555544333 555555555544 3 1223344555566666666666666666554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.51 E-value=0.16 Score=40.53 Aligned_cols=71 Identities=10% Similarity=-0.083 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 243 PKVEHYGCMVNLLSRAG---QVEEAYKLVMDM-KIE-P--DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
++..+.-.+.-++++.+ +++++..+|++. ... | +...+..|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444555554 344555555544 112 3 23445567778899999999999999999999988544
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.17 E-value=5.3 Score=40.15 Aligned_cols=113 Identities=8% Similarity=0.011 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFI----GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEA 264 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 264 (480)
+.+.|..+|......+ ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6677888887775433 22222222 2222233334344555555554322 23322233333334466888888
Q ss_pred HHHHHhCCCCC-C-HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 265 YKLVMDMKIEP-D-SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 265 ~~~~~~m~~~p-~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.+.|+.|+..+ + ....--+..++...|+.++|..+++.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888885332 1 22223345566777888888888888764
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.05 E-value=0.29 Score=36.25 Aligned_cols=65 Identities=14% Similarity=-0.035 Sum_probs=54.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 276 DSVLWGTLLGACRLHGNIALGEKIAEYLISQN-------LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 276 ~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
+..-+..|...+...++++.|...++.+++.. +..+..+..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998842 334567889999999999999999999998764
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.33 E-value=2.3 Score=33.26 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=62.9
Q ss_pred CCCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCcee
Q 038395 274 EPDSVLWGTLLGACRLHGN---IALGEKIAEYLISQNLANS-GTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCS 349 (480)
Q Consensus 274 ~p~~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 349 (480)
.|+..+--.+..++.++.+ ..++..+++.+.+.+|... .....|+-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566655556666666654 4578888888888777533 34567788899999999999988888764
Q ss_pred eEEeCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcc
Q 038395 350 SIELSNKVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYV 390 (480)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 390 (480)
.|...++...-..+.+.|.+.|++
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 344455555555566777777765
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=6 Score=38.01 Aligned_cols=186 Identities=8% Similarity=0.015 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhH--HHHHHHHHHhCCC
Q 038395 86 GLANEALVLFRRMLA-----EKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQV--GTALINMYSKCGS 158 (480)
Q Consensus 86 g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~ 158 (480)
|++++|++.+..+.+ ............++..|...++++...+.+..+.+.+|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 455666655544432 123334556666777777777777766666655554343332211 1122222222222
Q ss_pred H--HHHHHHHHhcCC---C-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHc
Q 038395 159 L--KDARLVFDRVND---K-------DVVVWNSMIVGYAMHGFGKDALQLFNEMCRI--RLKPS---DITFIGLLSACAH 221 (480)
Q Consensus 159 ~--~~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~~~ 221 (480)
. +.-..+.+.... . .......|...|...|++.+|.+++.++... |..+. ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 222333333321 1 1223456778888999999999999988643 22222 2356667788889
Q ss_pred cCCHHHHHHHHHHhhhh-cCCcCC----ccHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 222 AGLVNEGRRFFNTMKDE-YAIEPK----VEHYGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 222 ~g~~~~a~~~~~~m~~~-~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
.+++.+|..++..+... ....++ ...|.+++..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998887531 111222 345677888888899999998877766
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.27 E-value=2.3 Score=33.00 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=59.7
Q ss_pred hCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038395 155 KCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNT 234 (480)
Q Consensus 155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 234 (480)
.||++......+-.+.. +....+.-+..+...|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 45666655555555432 344556667778888888888888888543 3567788888888899999999998888888
Q ss_pred hhhhcCC
Q 038395 235 MKDEYAI 241 (480)
Q Consensus 235 m~~~~~~ 241 (480)
+.+. |+
T Consensus 151 AC~k-G~ 156 (172)
T 1wy6_A 151 ACKK-GE 156 (172)
T ss_dssp HHHT-TC
T ss_pred HHHh-hh
Confidence 8754 54
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.90 E-value=1.5 Score=45.09 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=49.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999998874
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.05 E-value=3.1e-05 Score=73.42 Aligned_cols=262 Identities=12% Similarity=0.061 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038395 41 LVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQI 120 (480)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~ 120 (480)
+..|..|..++...+++.+|++.|=+.. |...|..+|....+.|.+++-++.+...++..-.|.. =+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHhh
Confidence 4568888888888888877777664443 5556777888888888888888877666555333433 34677788888
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
+++.+-++++ -.||..-...+.+-+...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-++
T Consensus 130 ~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 130 NRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp CSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred CcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh-
Confidence 7766543332 245555566777777788888888777776653 33344445566666666553322
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHh
Q 038395 201 CRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM-KIE-PDSV 278 (480)
Q Consensus 201 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~ 278 (480)
.-+..||..+-.+|...+.+.-|...--.+. ..+.....++..|-+.|.+++-..+++.- |.+ ....
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 2355678888888888877766654333332 11222334566677788888877777765 433 4677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-cC-CC------CchhHHHHHHHHHHcCChhHHHH
Q 038395 279 LWGTLLGACRLHGNIALGEKIAEYLIS-QN-LA------NSGTYVLLSNIYAAIGNWDGVAR 332 (480)
Q Consensus 279 ~~~~li~a~~~~~~~~~a~~~~~~~~~-~~-~~------~~~~~~~l~~~~~~~g~~~~a~~ 332 (480)
+|+-|.-.|++.. .++-.+.++.... .+ |. ....|.-+.-.|.+-..|+.|..
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777777663 3333333332221 12 11 23456677777777777776653
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.88 E-value=0.44 Score=42.53 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcc-----CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC-CCH
Q 038395 89 NEALVLFRRMLAEKVEPN---EVTAVAVLSACGQI-----GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC-GSL 159 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g~~ 159 (480)
.+|..++++..+ +.|+ ...|..+...|.+. |+.++|++.|++..+. .-.-+..++....+.|+.. |+.
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCH
Confidence 455555555555 3444 34555555556553 6666666666666654 2111345555556666653 666
Q ss_pred HHHHHHHHhcC
Q 038395 160 KDARLVFDRVN 170 (480)
Q Consensus 160 ~~A~~~f~~m~ 170 (480)
+.|.+.+++..
T Consensus 257 ~~a~~~L~kAL 267 (301)
T 3u64_A 257 AGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.43 E-value=0.47 Score=44.92 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccCCce
Q 038395 280 WGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKE-----KGVQKEPGC 348 (480)
Q Consensus 280 ~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 348 (480)
...++.++...|+.+++...+..+...+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.|..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345667788889999999999999999999888999999999999999999999988753 488776654
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.37 E-value=0.00012 Score=69.61 Aligned_cols=164 Identities=12% Similarity=0.071 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcC
Q 038395 9 DLYVSTSLVDLYARGGDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEE--KDVVCWNVMIDGYAQHG 86 (480)
Q Consensus 9 d~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 86 (480)
.+.+|+.|..++.+.|.+.+|.+-| ++..|+..|..+|.+..+.|.+++-.+.+...++ ++...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 3457888999999999888887665 3445777788999999999999999998877665 45566679999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038395 87 LANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVF 166 (480)
Q Consensus 87 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f 166 (480)
+..+-.+++ -.||..-...+..-|...|.++.|+-+|..+.. |.-|...+.+.|++..|.+.-
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGGGSSTTTT
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHHHHHHHHH
Confidence 987754443 246776677888888888888888777765432 233344455556665554332
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChHHH
Q 038395 167 DRVNDKDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 167 ~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (480)
++. .++.+|-.+-.+|...+.+.-|
T Consensus 194 rKA--ns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 194 RKA--NSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp TTC--CSSCSHHHHTHHHHHSCTTTTT
T ss_pred Hhc--CChhHHHHHHHHHhCchHHHHH
Confidence 222 3455666666666655555433
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.07 E-value=2 Score=34.02 Aligned_cols=56 Identities=5% Similarity=-0.022 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHH
Q 038395 259 GQVEEAYKLVMDM---KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYV 315 (480)
Q Consensus 259 g~~~~A~~~~~~m---~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 315 (480)
+++++|.++|+.+ ..+- ...|-....--.++|++..|.+++.+.+...|.+.....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 5666666666666 1111 667777667677888999999999998888887654433
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.89 E-value=1.9 Score=33.02 Aligned_cols=72 Identities=10% Similarity=-0.112 Sum_probs=42.3
Q ss_pred CCccHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhH
Q 038395 243 PKVEHYGCMVNLLSRAGQVEE---AYKLVMDM-KIE-P--DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTY 314 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 314 (480)
|+..+--.+.-++.+.....+ +..++++. ... | .-...-.|.-++.+.|+++.|.+.++.+++..|.+..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 344444444444444444333 44455444 111 2 122334466688889999999999999999999875443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.84 E-value=1.2 Score=35.15 Aligned_cols=55 Identities=7% Similarity=-0.064 Sum_probs=44.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 289 LHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
..+|+++|.++|+.+++....-+..|...+..-.++|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3379999999999998874444556777777778999999999999998876644
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.37 E-value=3.9 Score=29.61 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...++|..|-+.+... +. ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3567888888877765 33 33333334456778999999999999999999999988765 4678888888888787
Q ss_pred HHcCCCCCHHHHH
Q 038395 201 CRIRLKPSDITFI 213 (480)
Q Consensus 201 ~~~g~~p~~~t~~ 213 (480)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 44444443
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.28 E-value=1.9 Score=31.34 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+. .+....|..+++ +-..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH---------HHhhHH
Confidence 455677777788788899999999999999999999999999999988654 344556777765 344556
Q ss_pred HhCCC
Q 038395 269 MDMKI 273 (480)
Q Consensus 269 ~~m~~ 273 (480)
+++|+
T Consensus 94 ~ELGI 98 (109)
T 1v54_E 94 NELGI 98 (109)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.82 E-value=2.4 Score=32.69 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=40.9
Q ss_pred CCHhHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 038395 275 PDSVLWGTLLGACRLHGN---IALGEKIAEYLISQNLAN-SGTYVLLSNIYAAIGNWDGVARVRTLMKEK 340 (480)
Q Consensus 275 p~~~~~~~li~a~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 340 (480)
|+..+--.+..++.+..+ ...+..+++.+.+.+|.. ......|+-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444444445555443 446777777777766632 334556777777888888888777777543
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.79 E-value=3.6 Score=29.73 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 121 GALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
...++|..|-+.+... +. ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3567888888877765 33 33333334456778999999999999999999999988765 4788888888888788
Q ss_pred HHcCCCCCHHHHH
Q 038395 201 CRIRLKPSDITFI 213 (480)
Q Consensus 201 ~~~g~~p~~~t~~ 213 (480)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7765 44444443
No 246
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.23 E-value=8.8 Score=32.06 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=124.0
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 038395 24 GDVLSAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKV 103 (480)
Q Consensus 24 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 103 (480)
++.+....+...+..+|...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+.. ++...+.++..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~--- 91 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK--- 91 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---
Confidence 44555555666666778777777788888888755555666667778877777777778887764 34455555543
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHH
Q 038395 104 EPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVG 183 (480)
Q Consensus 104 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~ 183 (480)
.+|...-...+.+..+.++.+....+. .+.+ .++..+-...+.++.+.|+.+....+...+.+++...-...+.+
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 166 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLI-KALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADA 166 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467777778888888888754333333 3332 46777777788888888876655555566666777777777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038395 184 YAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGL 224 (480)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 224 (480)
+.+.+. .++...+..+.+. ++...-...+.++.+.+.
T Consensus 167 L~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 888876 4667777777653 455555555666655443
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.96 E-value=2.5 Score=30.74 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
=+..+-++.+....+.|++....+.++||-+.+++..|.++++-++.. ......+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 355666677777778888888889999999999999998888888764 3333456666553
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.93 E-value=28 Score=36.62 Aligned_cols=249 Identities=8% Similarity=0.022 Sum_probs=127.1
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCC---HHH--HHHHHHH
Q 038395 50 CYAKQGEVAAARVLFDDMEE----KD--VVCWNVMIDGYAQHGLANEALVLFRRMLAEKV--EPN---EVT--AVAVLSA 116 (480)
Q Consensus 50 ~~~~~g~~~~A~~~f~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd---~~t--~~~ll~~ 116 (480)
|....|+.++++.+++.... .+ +..-..+.-+.+..|..+++++++...+...- .-+ ... -..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34667888888888887654 22 22333444566677777778887777654311 001 111 1122222
Q ss_pred HHccCC-hHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCCh
Q 038395 117 CGQIGA-LESGRWIHSYIENSRNIKVNV--QVGTALINMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFG 190 (480)
Q Consensus 117 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 190 (480)
.+-.|. -+++...+..+... . .+.. ....+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~d-d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYN-D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHT-C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhc-C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 222332 23444555554443 1 1111 1222344455566777776777665432 2 222233344455577898
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHH
Q 038395 191 KDALQLFNEMCRIRLKPSDITFI---GLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKL 267 (480)
Q Consensus 191 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 267 (480)
+.+..+.+.+... .....-|. ++.-+|+..|+.....+++..+..+ ...++.....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888763 21223333 3345678889988888888888753 122232222222333346666666667
Q ss_pred HHhCC--CCCCHhHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 038395 268 VMDMK--IEPDSVLWGTLLGACRLHGNI-ALGEKIAEYLI 304 (480)
Q Consensus 268 ~~~m~--~~p~~~~~~~li~a~~~~~~~-~~a~~~~~~~~ 304 (480)
++.+. ..|.+..-..+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66552 223332222233333333332 34555555554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.03 E-value=40 Score=36.77 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 038395 148 ALINMYSKCGSLKDARLVFDRV 169 (480)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~m 169 (480)
.+..+|..+|++++|...|.+.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555556666665555554
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.82 E-value=3.3 Score=39.02 Aligned_cols=55 Identities=5% Similarity=0.004 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 038395 180 MIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTM 235 (480)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 235 (480)
++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|.+.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555444321 224445555555555555555555555444
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.57 E-value=3.7 Score=31.60 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHH
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLV 268 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 268 (480)
+.-+..+-++.+....+.|+.....+.|.+|.+.+++..|.++|+.++.+. .+....|..+++ +-..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH---------HHhhHH
Confidence 344666777777778899999999999999999999999999999998643 445667877765 445566
Q ss_pred HhCCC
Q 038395 269 MDMKI 273 (480)
Q Consensus 269 ~~m~~ 273 (480)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66654
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.42 E-value=3.3 Score=42.55 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=30.1
Q ss_pred HHHHhCCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038395 151 NMYSKCGSLKDARLVFDRVND--K-DVVVWNSMIVGYAMHGFGKDALQLFNEM 200 (480)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (480)
+.+...|+++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455666666666665542 2 4556666666666666666666666554
No 253
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.89 E-value=15 Score=30.24 Aligned_cols=183 Identities=14% Similarity=0.083 Sum_probs=113.3
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 038395 28 SAEKLFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNE 107 (480)
Q Consensus 28 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 107 (480)
.-..+++.+..+|...-...+.++.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+.++.. .++.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~ 90 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDG 90 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCH
Confidence 33445555566676666666777777776555555666666677766666667777777653 4444444443 4677
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH 187 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 187 (480)
..-...+.+..+.++.+....+.. +.+ .++..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHH-HHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777777777777543333333 322 356667777777888877765555555556667777777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038395 188 GFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAG 223 (480)
Q Consensus 188 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 223 (480)
|.. ++...+..+... ++...-...+.+..+..
T Consensus 166 ~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 166 GGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp CSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred Cch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 764 566666666653 35555455555555443
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.58 E-value=29 Score=37.80 Aligned_cols=86 Identities=7% Similarity=0.026 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-c--hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChHHHHHHHHH
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKV-N--VQVGTALINMYSKCGSLKDARLVFDRVNDK--DVVVWNSMIVG 183 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~ 183 (480)
-|.-++..+.+.+.++.+.++-....+..+-.. + ...|..+...+...|++++|...+-.++.. -......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467777888888888888888777776512111 1 236788889999999999999999887653 34567778888
Q ss_pred HHhcCChHHHH
Q 038395 184 YAMHGFGKDAL 194 (480)
Q Consensus 184 ~~~~g~~~~A~ 194 (480)
.+..|+.+.-+
T Consensus 981 lce~~~~~~L~ 991 (1139)
T 4fhn_B 981 LTKQGKINQLL 991 (1139)
T ss_dssp HHHHCCHHHHH
T ss_pred HHhCCChhhhh
Confidence 88888766544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.95 E-value=7.6 Score=31.26 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC-----CCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-CHHHH
Q 038395 45 TTMLTCYAKQGEVAAARVLFDDMEE-----KDV-------VCWNVMIDGYAQHGLANEALVLFRRMLAEK-VEP-NEVTA 110 (480)
Q Consensus 45 ~~li~~~~~~g~~~~A~~~f~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-d~~t~ 110 (480)
-.-+..+...|.++.|+-+.+.+.. |++ .+...+..++...|++.+|...|++.++.. .-| +..+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3345556667777777776666431 332 145556667777788888888877764321 111 11111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 038395 111 VAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVND 171 (480)
Q Consensus 111 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~ 171 (480)
.++-. ...... .. ....+..+---+..+|.+.|+.++|+.+++.++.
T Consensus 104 ~~~~~----~ss~p~---------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 104 PSTGN----SASTPQ---------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc----cCCCcc---------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11100 000000 01 2334455555677788888888888888888764
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.82 E-value=29 Score=32.54 Aligned_cols=129 Identities=10% Similarity=-0.001 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CChHHH---
Q 038395 108 VTAVAVLSACGQIGALESGRWIHSYIENSRNIKV---NVQVGTALINMYSKCG-SLKDARLVFDRVND---KDVVVW--- 177 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g-~~~~A~~~f~~m~~---~~~~~~--- 177 (480)
.....+...+.+.|+.++..+++.......+.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666555443211111 1223345555555432 22222222222211 111122
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 178 ---NSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD-----ITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 178 ---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 13555666666666666666666543111121 123333445555666666666665554
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.12 E-value=27 Score=31.77 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHcc
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLF----NEMCRIRLKPSDITFIGLLSACAHA 222 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~~ 222 (480)
.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.++++|......|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34445588888888888876542 23445566665555544 4555677888888877777777655
Q ss_pred CCHHH-HHHHHHHhhh---hcC--CcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHH
Q 038395 223 GLVNE-GRRFFNTMKD---EYA--IEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALG 296 (480)
Q Consensus 223 g~~~~-a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a 296 (480)
..-+- =..+.+.+.+ +.| -.-++.....+...|.+.+++.+|...|- .+..+.+..+..++..+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC----
Confidence 43211 1222222221 122 12345666778899999999999998884 3544444666655555444433
Q ss_pred HHHHHHHHHcCCCCchhHH-HHHHHHHHcCChhHHHHHHHHHHh
Q 038395 297 EKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
|.....|. -.+--|...++...|..+++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222332 233457778899999888777654
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.93 E-value=11 Score=27.22 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=58.3
Q ss_pred ChHHHHHHHhhCC-CCChhHHHHHH--HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 25 DVLSAEKLFATMP-QRSLVSLTTML--TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 25 ~~~~A~~~~~~m~-~~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
..++|..+-+... +++ .-..+|| ..+...|++++|..+.+.+.-||..+|-+|.. .+.|..+++..-+.++-.+
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4566666655543 233 3333444 44678999999999999999999999988865 4788888888888788776
Q ss_pred CCCCCHHHHH
Q 038395 102 KVEPNEVTAV 111 (480)
Q Consensus 102 g~~pd~~t~~ 111 (480)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.27 E-value=12 Score=27.11 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=57.9
Q ss_pred ChHHHHHHHhhCC-CCChhHHHHHH--HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 038395 25 DVLSAEKLFATMP-QRSLVSLTTML--TCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAE 101 (480)
Q Consensus 25 ~~~~A~~~~~~m~-~~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 101 (480)
..++|..+-+... +++ .-..+|| ..+...|++++|..+.+.+.-||..+|-+|.. .+.|..+++..-+.++-..
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4566666655543 233 3333444 44678999999999999999999999988865 4678888888877777766
Q ss_pred CCCCCHHHHH
Q 038395 102 KVEPNEVTAV 111 (480)
Q Consensus 102 g~~pd~~t~~ 111 (480)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.08 E-value=32 Score=31.26 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLF----RRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
.|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3556677788889999988875432 23355667766555543 44556678888888877777776
Q ss_pred ccCCh--HH---HHHHHHHHHHhCC--CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChH
Q 038395 119 QIGAL--ES---GRWIHSYIENSRN--IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGK 191 (480)
Q Consensus 119 ~~~~~--~~---a~~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 191 (480)
....- +. ..+....-.+. | -.-|+.....+...|.+.+++.+|+.-|---.++....+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 65532 11 12223333333 3 23467788889999999999999999885322223356655444443333221
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 192 DALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 192 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
.+|...-.+++. |...+++..|..+++...+
T Consensus 185 --------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 223333344444 4556788888887766654
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.04 E-value=6.7 Score=30.23 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 038395 90 EALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALIN 151 (480)
Q Consensus 90 ~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 151 (480)
+..+-++.+....+.|++......+++|-+.+++..|..+++-++.. ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45555666667778889999999999999999999999988888764 3344556666553
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.87 E-value=11 Score=30.30 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC
Q 038395 251 MVNLLSRAGQVEEAYKLVMDMK 272 (480)
Q Consensus 251 li~~~~~~g~~~~A~~~~~~m~ 272 (480)
+...|.+.+++++|+.+++.+|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4556667777777777777764
No 263
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.70 E-value=23 Score=29.35 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=120.4
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 038395 56 EVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIEN 135 (480)
Q Consensus 56 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 135 (480)
+.+....+.+.+..+|...-...+..+.+.|.. ++...+.++.. .+|...-...+.++...++.+....+.. +.+
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~ 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc
Confidence 333444555566677777777777778887774 34444445544 3577777777888888876544333333 222
Q ss_pred hCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038395 136 SRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGL 215 (480)
Q Consensus 136 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 215 (480)
.++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.|..+ +...+..+.. .++...-...
T Consensus 92 ----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 92 ----DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp ----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 4677777888888888888766666666667788777777788888887754 5555555553 4566666777
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCC
Q 038395 216 LSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQ 260 (480)
Q Consensus 216 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 260 (480)
+.++.+.+. +++...+..+.++ ++..+-...+.++.+.+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC
Confidence 778888776 4566666666643 555555566666655443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.57 E-value=32 Score=30.95 Aligned_cols=169 Identities=5% Similarity=0.013 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVL----FRRMLAEKVEPNEVTAVAVLSACG 118 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~ll~~~~ 118 (480)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777788888888888875432 2335566776665554 445556688888888888887776
Q ss_pred ccCCh-----HHHHHHHHHHHHhCCC--CCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhc---C
Q 038395 119 QIGAL-----ESGRWIHSYIENSRNI--KVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMH---G 188 (480)
Q Consensus 119 ~~~~~-----~~a~~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g 188 (480)
....- +-.........+. |- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 54321 2223333333333 22 237788889999999999999999888733323455555555444433 4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhh
Q 038395 189 FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDE 238 (480)
Q Consensus 189 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 238 (480)
...++ |...-.+++. |.-.+++..|..+|+...+.
T Consensus 183 ~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33332 2222233343 44568888888888876643
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.48 E-value=47 Score=31.65 Aligned_cols=185 Identities=9% Similarity=0.003 Sum_probs=92.7
Q ss_pred CChHHHHHHHHHHHHh----CCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHH----HHhcCC
Q 038395 121 GALESGRWIHSYIENS----RNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVG----YAMHGF 189 (480)
Q Consensus 121 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~----~~~~g~ 189 (480)
++++.|.+.+-.+.+. ........+...++..+.+.|+++...+.+..+..+ -...-..|+.. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777766555542 134445667788899999999998887666555432 11122223322 222222
Q ss_pred hHHHHH--HHHHHHH--cC-CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCcCC---ccHHHHHHHHHHH
Q 038395 190 GKDALQ--LFNEMCR--IR-LKP---SDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEPK---VEHYGCMVNLLSR 257 (480)
Q Consensus 190 ~~~A~~--l~~~m~~--~g-~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~---~~~~~~li~~~~~ 257 (480)
.+.... +...... .| +-. ....-..|...+...|++.+|..++..+..+. +..+. ...+..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 221111 1111100 11 001 01122345556666677777777777665432 21111 3345555666667
Q ss_pred cCCHHHHHHHHHhC-----CC--CCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 258 AGQVEEAYKLVMDM-----KI--EPD--SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 258 ~g~~~~A~~~~~~m-----~~--~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
.+++..|..+++++ .. .|+ ...+...+..+...+++.+|-+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777776666654 11 122 12344445555556666666665555544
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.90 E-value=5.8 Score=34.81 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=31.5
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038395 255 LSRAGQVEEAYKLVMDM-KIEP-DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLA 309 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~ 309 (480)
+.+.|++++|++....- .-+| |...-..|+..++..|+++.|.+-++...+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44556666666555443 2233 4444455666666666666666666666666664
No 267
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.73 E-value=28 Score=28.56 Aligned_cols=183 Identities=12% Similarity=0.065 Sum_probs=117.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 038395 59 AARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRN 138 (480)
Q Consensus 59 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 138 (480)
.--.+++.+..+|...-...+..+.+.|..+ +...+.++.. .+|...-...+.++...++.+....+.. +..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~--- 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK--- 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---
Confidence 3344556666777777777777777777644 3344444443 4577676777777777776544333333 322
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038395 139 IKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSA 218 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 218 (480)
.++..+-...+.++.+.|+.+....+...+.+++...-...+.++.+.+.. ++...+..+.. .++...-...+.+
T Consensus 87 -d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~a 161 (201)
T 3ltj_A 87 -DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADA 161 (201)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 367777778888888888876666666666677877777777788887765 45555555543 3566666777777
Q ss_pred HHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcC
Q 038395 219 CAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAG 259 (480)
Q Consensus 219 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 259 (480)
+...|.. ++...+..+..+ ++..+-...+.++.+.+
T Consensus 162 L~~~~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 162 LGEIGGE-RVRAAMEKLAET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHCSH-HHHHHHHHHHHH----CCHHHHHHHHHHHHHCC
T ss_pred HHHhCch-hHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 8777764 455566666543 55555556666666544
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.18 E-value=58 Score=30.46 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--------CChhHHHHHHHHHHhc-CCHHHHHHHHhhcCC---CCHHHH----
Q 038395 12 VSTSLVDLYARGGDVLSAEKLFATMPQ--------RSLVSLTTMLTCYAKQ-GEVAAARVLFDDMEE---KDVVCW---- 75 (480)
Q Consensus 12 ~~~~ll~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~---~~~~~~---- 75 (480)
....|...|.+.|+.++...++..... +....-..||..+... +..+.-.++.....+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999998887753 1234466777777553 334444444433332 111233
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCCchhHHH
Q 038395 76 --NVMIDGYAQHGLANEALVLFRRMLAEKVEPN-----EVTAVAVLSACGQIGALESGRWIHSYIENSR-NIKVNVQVGT 147 (480)
Q Consensus 76 --~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 147 (480)
.-|+..|...|++.+|++++.++.+.=-+.| ...+..-+..|...+++.+++..+....... .+.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2578888999999999998888876411112 1235555666777888888888877765431 1223332222
Q ss_pred HH----HHHHH-hCCCHHHHHHHHHh
Q 038395 148 AL----INMYS-KCGSLKDARLVFDR 168 (480)
Q Consensus 148 ~l----i~~y~-~~g~~~~A~~~f~~ 168 (480)
.+ .-++. ..+++..|...|-+
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 11 22344 56667776666544
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.64 E-value=41 Score=29.46 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=23.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 038395 185 AMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMK 236 (480)
Q Consensus 185 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 236 (480)
.+.|..++|++....-.+.. +-|...=..++..+|-.|++++|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555555544444431 1233333344444555555555555444443
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.96 E-value=53 Score=29.53 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=98.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDALQL----FNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
|.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445555588888888888876542 2344566776665554 4445566888888888777777655
Q ss_pred cCCHH-HHHHHHHHhhh---hcCC--cCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc---CC
Q 038395 222 AGLVN-EGRRFFNTMKD---EYAI--EPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLH---GN 292 (480)
Q Consensus 222 ~g~~~-~a~~~~~~m~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~---~~ 292 (480)
...-+ .=.++.+.+.+ +.|- .-++.....+...|.+.|++.+|...|- .+..-+...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 11222333321 1111 2356677888899999999999998776 33111355555555544443 33
Q ss_pred hhHHHHHHHHHHHcCCCCchhHH-HHHHHHHHcCChhHHHHHHHHHHh
Q 038395 293 IALGEKIAEYLISQNLANSGTYV-LLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
..++ ..|. -.+-.|...|+...|..+++...+
T Consensus 184 ~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3322 2221 123356678899999999887654
No 271
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.79 E-value=1e+02 Score=32.60 Aligned_cols=260 Identities=12% Similarity=0.068 Sum_probs=142.8
Q ss_pred HHhcCChHHHHHHHhhCCC----CChh--HHHHHHHHHHhcCCHHHHHHHHhhcC-CCC----------HHHHHHHHHHH
Q 038395 20 YARGGDVLSAEKLFATMPQ----RSLV--SLTTMLTCYAKQGEVAAARVLFDDME-EKD----------VVCWNVMIDGY 82 (480)
Q Consensus 20 ~~~~g~~~~A~~~~~~m~~----~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~-~~~----------~~~~~~li~~~ 82 (480)
....|+.++++.+++.... .+.. .-..+.-+...+|.-+++..++.... .++ +..-.+|.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456788888888887653 2222 23333444566776667777665533 222 12233344444
Q ss_pred HHcCC-hHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCC
Q 038395 83 AQHGL-ANEALVLFRRMLAEKVEPNEVT--AV--AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCG 157 (480)
Q Consensus 83 ~~~g~-~~~A~~~~~~m~~~g~~pd~~t--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 157 (480)
+-.|. -+++.+.+..+.... +..+ .. ++...+...|+-+....++..+... ...++.-..++.-++.-.|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCC
Confidence 44453 246677777766532 2221 11 2233345667888888888877653 2223333333334444678
Q ss_pred CHHHHHHHHHhcCC-CCh-HHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038395 158 SLKDARLVFDRVND-KDV-VVWN---SMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFF 232 (480)
Q Consensus 158 ~~~~A~~~f~~m~~-~~~-~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 232 (480)
+.+.+..+.+.+.. .|. +-|. ++.-+|+-.|+.....+++..+.... ..+......+.-+....|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88887777776653 333 2333 34456778888877777998887642 222222222223444566666677777
Q ss_pred HHhhhhcCCcCCccHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHhHHHHHHHHH
Q 038395 233 NTMKDEYAIEPKVEHYGCMVNLLSRAGQV-EEAYKLVMDMKIEPDSVLWGTLLGAC 287 (480)
Q Consensus 233 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~li~a~ 287 (480)
+.+.+ ...|.+..-.++.-+....|.. .+|.+++..+--.+|..+-..-+.++
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 66653 2245555555555555555554 67788888874345554443333333
No 272
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=71.00 E-value=52 Score=28.60 Aligned_cols=238 Identities=11% Similarity=0.071 Sum_probs=134.7
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHCCCCCCH
Q 038395 32 LFATMPQRSLVSLTTMLTCYAKQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLA----NEALVLFRRMLAEKVEPNE 107 (480)
Q Consensus 32 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~ 107 (480)
++..+..+|...-...+.++.+.|..+....+.+.+..++...-...+.++.+.|.. ...+.++..+... .++.
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~ 105 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSA 105 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCH
Confidence 344445566666556677777777655555555666667776666667777777743 2333444432221 4566
Q ss_pred HHHHHHHHHHHccCC-----hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChHHHHHHHH
Q 038395 108 VTAVAVLSACGQIGA-----LESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSLKDARLVFDRVNDKDVVVWNSMIV 182 (480)
Q Consensus 108 ~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 182 (480)
..-...+.++...+. ...+...+.... -.++..+-...+.+..+.|+.+....+...+.+++...-...+.
T Consensus 106 ~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l----~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~ 181 (280)
T 1oyz_A 106 CVRATAIESTAQRCKKNPIYSPKIVEQSQITA----FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHT----TCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHh----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 666667777666552 233333333332 34677777777888888877544444555556677666556666
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCH
Q 038395 183 GYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQV 261 (480)
Q Consensus 183 ~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 261 (480)
++.+.| ....+...+..+.. .++...-...+.++.+.|+.+....+...+. + |++ -...+.++++.|..
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d----~~v--r~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-K----NTV--YDDIIEAAGELGDK 251 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-S----SSC--CHHHHHHHHHHCCG
T ss_pred HHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-C----ccH--HHHHHHHHHhcCch
Confidence 666655 24556666666554 3566666677778888886544444444333 2 342 23556777887874
Q ss_pred HHHHHHHHhC-CCCCCHhHHHHHHHH
Q 038395 262 EEAYKLVMDM-KIEPDSVLWGTLLGA 286 (480)
Q Consensus 262 ~~A~~~~~~m-~~~p~~~~~~~li~a 286 (480)
++...+.++ .-.++.......+.+
T Consensus 252 -~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 252 -TLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp -GGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred -hhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 455555444 334454444444443
No 273
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.67 E-value=51 Score=29.66 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=45.5
Q ss_pred HHhCCCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 038395 268 VMDMKIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKG 341 (480)
Q Consensus 268 ~~~m~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 341 (480)
|...+++|. .-+..+-+..+.+++++..|..+.+++++++|... ..++|.+++..-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444466664 45677788889999999999999999999998643 3366888887776554
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.59 E-value=26 Score=26.77 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCH
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGF--GKDALQLFNEMCRIRLKPSD 209 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 209 (480)
...++.-|...|+.++|.+.++++..| ...+..++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 456777888889999999999888765 23445555666665542 35677778777776655433
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.46 E-value=41 Score=31.90 Aligned_cols=59 Identities=10% Similarity=-0.036 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 247 HYGCMVNLLSRAGQVEEAYKLVMDM-----KIEPDSVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 247 ~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
....+.+.|.+.|++++|.+.+.++ +..--...+-.++..+...+|+..+.....++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445566666666666666666655 1112244555556666666666666666666544
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.54 E-value=85 Score=29.65 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHH--
Q 038395 176 VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPS--DITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCM-- 251 (480)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-- 251 (480)
++..+...|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+...+.++.....-.++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344455555555555566665555554322222 2344555556666666666666666554322212222211111
Q ss_pred --HHHHHHcCCHHHHHHHHHhC
Q 038395 252 --VNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 252 --i~~~~~~g~~~~A~~~~~~m 271 (480)
.-.+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 11123456777776666554
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.49 E-value=36 Score=25.98 Aligned_cols=63 Identities=13% Similarity=0.229 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHGL--ANEALVLFRRMLAEKVEPN 106 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~pd 106 (480)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+.+++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566777777788888888888776552 2334445555555432 3456667777776665443
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.49 E-value=74 Score=27.25 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038395 13 STSLVDLYARGGDVLSAEKLFATMPQRSLV---SLTTMLTCYAKQGEVAAARVLFDDME 68 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~ 68 (480)
.+..+...++.|+++....+++.-...+.. .-.+.+...++.|+.+-+..+++.-.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 63 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 345566667788888888888765433221 11233444456777777766666543
No 279
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.13 E-value=54 Score=25.19 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCccHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCC--CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 243 PKVEHYGCMVNLLSRAGQV---EEAYKLVMDM-KIEP--DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p--~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
|+..+--.+.-++.+..+. .++..+++++ ...| .-..+--|.-++.+.|+++.|.+..+.+++..|.|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4444433344444444433 2344455444 1123 1334445666778888888888888888888887753
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.21 E-value=33 Score=29.64 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC
Q 038395 46 TMLTCYAKQGEVAAARVLFDDMEE 69 (480)
Q Consensus 46 ~li~~~~~~g~~~~A~~~f~~~~~ 69 (480)
+.+...++.|+++....+++.-..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCC
Confidence 344445667777777777665443
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.56 E-value=1.3e+02 Score=29.16 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh-H------HHH-HHHHHHHhcCChHHHHHHHHHHHHc
Q 038395 143 VQVGTALINMYSKCGSLKDARLVFDRVNDKDV-V------VWN-SMIVGYAMHGFGKDALQLFNEMCRI 203 (480)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-~------~~~-~li~~~~~~g~~~~A~~l~~~m~~~ 203 (480)
..++|.++..|...+.++.|.++..+..-|.. . .|. -+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55678888888989999999999888765422 1 121 1334556678888888888877653
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.80 E-value=81 Score=26.19 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCceeeEEeCC
Q 038395 278 VLWGTLLGACRLHGNIALGEKIAEYLISQN--LANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKEPGCSSIELSN 355 (480)
Q Consensus 278 ~~~~~li~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~ 355 (480)
..|-..+..| ..++...+..+|..|...+ ..-+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P----------- 148 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP----------- 148 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS-----------
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 4555555544 2344668899999998855 4566788899999999999999999998888776544
Q ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHHHHHHCCcccC
Q 038395 356 KVHEFLAGDLRHPKSKEIYMMLEEINGWLKAEGYVPQ 392 (480)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 392 (480)
.+...+...+...+|.+.+++-|
T Consensus 149 --------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 149 --------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred --------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 23444555566778888887433
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=57.15 E-value=74 Score=26.35 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHhCCCCC
Q 038395 76 NVMIDGYA---QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA-----LESGRWIHSYIENSRNIKV 141 (480)
Q Consensus 76 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 141 (480)
--+|+++. +..+++.|+-.+.+|++.| .|.-..-..++-+.-..|. +..+...++..... |.+.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE 86 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPE 86 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCH
Confidence 34555554 4589999999999999999 7666665566666655553 23344445555554 5543
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.22 E-value=27 Score=27.67 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 038395 146 GTALINMYSKCGSLKDARLVFDRVNDK---DVVVWNSMIVGYAMHGF--GKDALQLFNEMCRIRLKPS 208 (480)
Q Consensus 146 ~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 208 (480)
.+.++.-|...|+.++|.+.++++..| ...+..++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456777788888888888888888765 23445555556665432 3456677777776665443
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=56.03 E-value=1e+02 Score=26.69 Aligned_cols=228 Identities=12% Similarity=-0.003 Sum_probs=125.9
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh----HHHHHHHHHHHHhCC
Q 038395 63 LFDDMEEKDVVCWNVMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGAL----ESGRWIHSYIENSRN 138 (480)
Q Consensus 63 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~ 138 (480)
+++.+..+|...-...+.++.+.|. .++...+.++.. .|+...-...+.++.+.+.. .....++......
T Consensus 28 L~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~-- 101 (280)
T 1oyz_A 28 LFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN-- 101 (280)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--
Confidence 3444455666555556666666664 445665656654 35666666666777776632 2333344322212
Q ss_pred CCCchhHHHHHHHHHHhCCC-----HHHHHHHH-HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038395 139 IKVNVQVGTALINMYSKCGS-----LKDARLVF-DRVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITF 212 (480)
Q Consensus 139 ~~~~~~~~~~li~~y~~~g~-----~~~A~~~f-~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 212 (480)
.++..+-...+.++.+.|. ...+...+ ..+..++...-...+.++...|+.+ +...+.++.. .|+...-
T Consensus 102 -d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 102 -DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHH
Confidence 3466666666666666552 33444444 3445677776667777777777643 5555555543 3555555
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 038395 213 IGLLSACAHAG-LVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHG 291 (480)
Q Consensus 213 ~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~ 291 (480)
...+.+....+ ....+...+..+.+ .++..+-...+.++++.|...-.-.+...+. .|+ .-...+.++...|
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHC
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcC
Confidence 55555665554 23445555555443 3566666777788888886554444444443 244 2344566777777
Q ss_pred ChhHHHHHHHHHHHcCCC
Q 038395 292 NIALGEKIAEYLISQNLA 309 (480)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~ 309 (480)
+. .+...+..+.+..++
T Consensus 250 ~~-~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 250 DK-TLLPVLDTMLYKFDD 266 (280)
T ss_dssp CG-GGHHHHHHHHTTSSC
T ss_pred ch-hhhHHHHHHHhcCCC
Confidence 74 455666666654443
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.02 E-value=1.2e+02 Score=30.44 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhC-
Q 038395 78 MIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKC- 156 (480)
Q Consensus 78 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~- 156 (480)
....+.-.|+++.|++.+.+. ...|.+.+...+..+.-++- -+.+... .......-+..||..|.+.
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~-~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLT-KKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCccccc-CCCcccccHHHHHHHHHHHh
Q ss_pred --CCHHHHHHHHHhcCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038395 157 --GSLKDARLVFDRVNDKD-----VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGR 229 (480)
Q Consensus 157 --g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 229 (480)
.+..+|.+.|--+...+ ...+.++-......+.++ +.--.+.||..--..+|.-+...=+++.-.
T Consensus 368 ~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~--------~LLG~i~~dG~r~~G~i~~~~~li~l~d~~ 439 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT--------VLLGKIGRDGARIPGVIEERQPLLHVRDEK 439 (661)
T ss_dssp TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH--------HHHCEECTTSCEECCHHHHTCGGGTCSCHH
T ss_pred hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH--------HHcCCcCCCCCcCcchHHHhhcccccccHH
Q ss_pred HHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCC---------------
Q 038395 230 RFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPD--SVLWGTLLGACRLHGN--------------- 292 (480)
Q Consensus 230 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~li~a~~~~~~--------------- 292 (480)
++.+.+... ...-+...|++++|..+|+-.+ ..| ..+.+.+++-....-+
T Consensus 440 ~~~~~i~~~------------aA~~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~ 506 (661)
T 2qx5_A 440 EFLHTITEQ------------AARRADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETN 506 (661)
T ss_dssp HHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTC
T ss_pred HHHHHHHHH------------HHHHHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhccccccccccccccccccc
Q ss_pred -hhHHHHHHHH-------HHHcCCCCchhHHHHHHHH-----HHcCChhHHHHHHHHH
Q 038395 293 -IALGEKIAEY-------LISQNLANSGTYVLLSNIY-----AAIGNWDGVARVRTLM 337 (480)
Q Consensus 293 -~~~a~~~~~~-------~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m 337 (480)
...|.++.+. ..+..+.+..++..|+... ...|+|+.|.+.++++
T Consensus 507 l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 507 PVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.93 E-value=1.7e+02 Score=29.14 Aligned_cols=169 Identities=9% Similarity=-0.025 Sum_probs=89.4
Q ss_pred CHHHHHHHHHhcCC---CChH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038395 158 SLKDARLVFDRVND---KDVV----VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRR 230 (480)
Q Consensus 158 ~~~~A~~~f~~m~~---~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 230 (480)
+.+.|...|..... -+.. .+..+...+...+...++...+....... ++.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 67888888876632 1222 23333333344453556777777655432 333333333334446799999999
Q ss_pred HHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038395 231 FFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLISQNLAN 310 (480)
Q Consensus 231 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~ 310 (480)
.|..|... ......-.--+..++...|+.++|..+|+.+-- +. +|..++.+- +.|..-.. . .....+..
T Consensus 307 ~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~--~fYg~lAa~-~Lg~~~~~-~----~~~~~~~~ 375 (618)
T 1qsa_A 307 WLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR--GFYPMVAAQ-RIGEEYEL-K----IDKAPQNV 375 (618)
T ss_dssp HHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC--SHHHHHHHH-HTTCCCCC-C----CCCCCSCC
T ss_pred HHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-CC--ChHHHHHHH-HcCCCCCC-C----CCCCChhH
Confidence 99888742 111232233455677788999999999988832 22 344444332 22221000 0 00000100
Q ss_pred ch-----hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 038395 311 SG-----TYVLLSNIYAAIGNWDGVARVRTLMKE 339 (480)
Q Consensus 311 ~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 339 (480)
.. .-...+..+...|....|...+..+.+
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 00 122344556778888888877776654
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.68 E-value=2.1e+02 Score=30.33 Aligned_cols=48 Identities=6% Similarity=-0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch----hHHHHHHHHHHhCC
Q 038395 109 TAVAVLSACGQIGALESGRWIHSYIENSRNIKVNV----QVGTALINMYSKCG 157 (480)
Q Consensus 109 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g 157 (480)
-|..++..+-+.+.++.+.++-+..++. --+.|. ..++.+..+++..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 4667777777777777777777777754 222222 34555666555443
No 289
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.18 E-value=75 Score=24.72 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=43.7
Q ss_pred CCccHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC-C-HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchh
Q 038395 243 PKVEHYGCMVNLLSRAGQVE---EAYKLVMDM-KIEP-D-SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGT 313 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 313 (480)
|+..+--.+.-++.+..+.+ ++..+++++ ...| + -...--|.-++.+.|+++.|.+..+.+++.+|.|..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44444444444555554433 344455544 1123 1 2233446678899999999999999999999988543
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.74 E-value=34 Score=27.02 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHGL--ANEALVLFRRMLAEKVEP 105 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 105 (480)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4566777777777777777777776552 2334444445544322 345666666666665444
No 291
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=53.14 E-value=9.5 Score=26.85 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHHHHHCCcccCCcceecccchhhhhhhhhhhhHHHHHHHhc
Q 038395 368 PKSKEIYMMLEEINGWLKAEGYVPQTQIVLHDIGEKQKQNSLEVHSEKLAVAFGL 422 (480)
Q Consensus 368 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~ 422 (480)
+...+++..+++-..+++..|+.||...+-. +...+.++.+-..||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 4566788888888999999999999876532 2334456666667764
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.74 E-value=83 Score=24.78 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 038395 294 ALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 344 (480)
+.+..+|..|...+. ..+..|..-+..+...|++.+|.++++.-.+++-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 347888888888554 456678888889999999999999998887776554
No 293
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=52.63 E-value=3.4 Score=23.94 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=12.9
Q ss_pred cCCccccc-ccccccCCCC
Q 038395 462 DRNRFHHF-VNGTCSCGDY 479 (480)
Q Consensus 462 ~~~~~h~~-~~g~~s~~~~ 479 (480)
.|-.-|.. ++|.||||-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 44445555 6999999976
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.83 E-value=1.1e+02 Score=24.55 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 038395 295 LGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344 (480)
Q Consensus 295 ~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 344 (480)
....+|..|...+. .-+..|...+..+...|++.+|.++|+.-.+++-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 36778888888554 566678889999999999999999998888877654
No 295
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=46.09 E-value=1.1e+02 Score=25.54 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=43.6
Q ss_pred HHHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHhCCCC
Q 038395 73 VCWNVMIDGYA---QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIGA-----LESGRWIHSYIENSRNIK 140 (480)
Q Consensus 73 ~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 140 (480)
..+--+|+++. +..+++.|+-.+.+|++.|-.|.-..-..++-+.-..|. +..+...++..... |.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCC
Confidence 33445666665 458999999999999999988776666666666555442 33444455555554 554
No 296
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=45.35 E-value=1.2e+02 Score=25.14 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 76 NVMIDGYA---QHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 76 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
--+|+++. +..+++.|+-.+.+|++.|-.|.-..-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566655 45899999999999999987776666555555554443
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.84 E-value=1.9e+02 Score=26.56 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 038395 43 SLTTMLTCYAKQGEVAAARVLFDDMEEKD 71 (480)
Q Consensus 43 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 71 (480)
...++|.-|...|+.++|...++++..|.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 35667777777788888888887776553
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.13 E-value=2.4e+02 Score=29.84 Aligned_cols=85 Identities=6% Similarity=-0.108 Sum_probs=49.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC----------------
Q 038395 215 LLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVMDM--KIEPD---------------- 276 (480)
Q Consensus 215 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 276 (480)
++..|...|..+-+.++..... -++..--.+..+|...|++++|.+.|++. ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 5566666777766655332222 22222224556778889999999999887 32111
Q ss_pred -------HhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038395 277 -------SVLWGTLLGACRLHGNIALGEKIAEYLIS 305 (480)
Q Consensus 277 -------~~~~~~li~a~~~~~~~~~a~~~~~~~~~ 305 (480)
..-|..++..+-+++-++-+.+..+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11345555556666666666666666665
No 299
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.62 E-value=1.6e+02 Score=27.29 Aligned_cols=301 Identities=14% Similarity=0.127 Sum_probs=146.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCC
Q 038395 14 TSLVDLYARGGDVLSAEKLFATMPQRSL---VSLTTMLTCYAKQGEVAAARVLFDDMEEK---DVVCWNVMIDGYAQHGL 87 (480)
Q Consensus 14 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 87 (480)
.+.+...+..|+++-...+++.-..++. ... +.+...++.|+.+-+..+++.-... |..-++.| ...++.|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~ 92 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIGH 92 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCC
Confidence 3456666788999999999987544332 222 3344456788988888888764432 22223333 33456676
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHHhCCCHHHHH
Q 038395 88 ANEALVLFRRMLAEKVEPNEVT--AVAVLSACGQIGALESGRWIHSYIENSRNIKVNV--QVGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 88 ~~~A~~~~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~ 163 (480)
.+-+.- +.+.|..|+... -.+.+...+..|+.+.+..+++. +..++. ....+.+...++.|+.+-+.
T Consensus 93 ~~~v~~----Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 93 TNMVKL----LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-----EASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HHHHHH----HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-----TCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHH----HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-----CCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 654333 334454443211 11233444566777766665543 222211 11123344556788888887
Q ss_pred HHHHhcCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 164 LVFDRVNDKD---VVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDI---TFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 164 ~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
.+++.-..++ ...++.| ...+..|+.+ +++.+.+.|..|+.. ..+.+ ...+..|+.+-+..+++.
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~--- 234 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPL-HVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQY--- 234 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHH-HHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHHHT---
T ss_pred HHHhCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHc---
Confidence 7777544322 2222233 2334566654 445555555554432 22233 344556777666655543
Q ss_pred hcCCcCCcc--HHHHHHHHHHHcCCHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 238 EYAIEPKVE--HYGCMVNLLSRAGQVEEAYKLVMDMKIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 238 ~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
|..++.. .-...+..-++.|..+-+..+++.- ..+ +..-++.|. ..+..|+.+.+..+++.-...+..+..
T Consensus 235 --g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 235 --GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLH-LVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp --TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHH-HHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred --CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 3333211 1112233445677777666665543 122 222223333 334567766555544432222222222
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQ 343 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 343 (480)
....| ..-+..|+.+-+. .+.+.|..
T Consensus 311 g~t~L-~~A~~~g~~~~v~----~Ll~~gad 336 (437)
T 1n11_A 311 GYTPL-HVASHYGNIKLVK----FLLQHQAD 336 (437)
T ss_dssp CCCHH-HHHHHSSCSHHHH----HHHHTTCC
T ss_pred CCCHH-HHHHHcCcHHHHH----HHHhcCCC
Confidence 22222 2334566665444 44455544
No 300
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=40.84 E-value=1.1e+02 Score=27.51 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHhCCCCCC--HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 038395 267 LVMDMKIEPD--SVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGV 342 (480)
Q Consensus 267 ~~~~m~~~p~--~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 342 (480)
+|...+++|. .-+..+-+..+.+++++..|..+.+++++++|+.. ..+.|.+++..-.+.+.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 3444466664 45677788888999999999999999999987532 23668888877776543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.46 E-value=66 Score=25.96 Aligned_cols=15 Identities=13% Similarity=0.543 Sum_probs=7.3
Q ss_pred HhCCCHHHHHHHHHh
Q 038395 154 SKCGSLKDARLVFDR 168 (480)
Q Consensus 154 ~~~g~~~~A~~~f~~ 168 (480)
++.|+.+-+..+++.
T Consensus 114 ~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 114 AEKGHIDNVKLLLED 128 (201)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344555555444444
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.66 E-value=1.7e+02 Score=25.32 Aligned_cols=179 Identities=9% Similarity=-0.020 Sum_probs=81.1
Q ss_pred HHHhCCCHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHH
Q 038395 152 MYSKCGSLKDARLVFDRVNDKDVV-VWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD---ITFIGLLSACAHAGLVNE 227 (480)
Q Consensus 152 ~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~ 227 (480)
..+..|+.+-+..+++.-...+.. .++. +...+..|+.+- ++.+.+.|..|+. ...+.|..| +..|..+-
T Consensus 37 ~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~g~~~~ 110 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNAGALKNLLENEFP-LHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTALYYA-VDSGNMQT 110 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTGGGSCCTTCCH-HHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcHHHHH-HHcCCHHH
Confidence 334455655555555442211111 1222 222344555443 3333344544432 222333333 34566655
Q ss_pred HHHHHHHhhhhcCCcCC---ccHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038395 228 GRRFFNTMKDEYAIEPK---VEHYGCMVNLLSRAGQVEEAYKLVMDMKIEPDSVLWGTLLGACRLHGNIALGEKIAEYLI 304 (480)
Q Consensus 228 a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~a~~~~~~~~~a~~~~~~~~ 304 (480)
+..+++. |..++ ..-+...+..-+..|+.+-+..+++.-....+...-.+.+...+..|+.+.+..+++.-.
T Consensus 111 v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 111 VKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 5544443 33333 222223444455677777666666554322232122344445557788887777776655
Q ss_pred HcCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 038395 305 SQNLANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQKE 345 (480)
Q Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 345 (480)
..+..+..-....+..-...|.. ++.+.+.+.|..++
T Consensus 186 d~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 186 STNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIY 222 (285)
T ss_dssp HTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCST
T ss_pred CCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCC
Confidence 54433322222212222334553 45555667776554
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.35 E-value=52 Score=27.43 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHhCCCCCCHh---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 038395 258 AGQVEEAYKLVMDMKIEPDSV---LWGTLLGACRLHGNIALGEKIAEYLISQNLANSGTYVLLSNIYAAIGNWDGVARVR 334 (480)
Q Consensus 258 ~g~~~~A~~~~~~m~~~p~~~---~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (480)
.+...+..+++.+.+..++.. .-.+.+...+..|+.+.+..+++.-......+..-. +.+..-.+.|+.+-+..++
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHH
Confidence 444445555555554333211 112334444566776655554443111111111111 1233345666666666555
Q ss_pred HHHHhCC
Q 038395 335 TLMKEKG 341 (480)
Q Consensus 335 ~~m~~~~ 341 (480)
+...+.+
T Consensus 231 ~~~~~~~ 237 (240)
T 3eu9_A 231 EARQAKG 237 (240)
T ss_dssp HHC----
T ss_pred HhhhccC
Confidence 5444433
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.64 E-value=89 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=17.1
Q ss_pred CCccHHHHHHHHHHHcCCHHHHHHHHHh
Q 038395 243 PKVEHYGCMVNLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 243 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 270 (480)
++.......+..+.+.|+-++|.++|-+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3344445556666777777777776644
No 305
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=35.22 E-value=12 Score=21.87 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.3
Q ss_pred eecccCCCcchhh
Q 038395 436 NLRVCPDCHAVFK 448 (480)
Q Consensus 436 ~l~~c~~~~~~~~ 448 (480)
++|+|.+|+.-+.
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 6899999986543
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.97 E-value=1.1e+02 Score=23.71 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH
Q 038395 98 MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 98 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 159 (480)
+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..+..--++.+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 4445555444322 2333333334444555666666554 4344444444445555555543
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.90 E-value=50 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q 038395 55 GEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEALV 93 (480)
Q Consensus 55 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 93 (480)
.+.+.|.++++.++.+...+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467888888888888888888888888877676665533
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.36 E-value=1.2e+02 Score=25.40 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhcCCcCCc-cH-----HHHHHHHHHHcCCHHHHHHHHHhC
Q 038395 225 VNEGRRFFNTMKDEYAIEPKV-EH-----YGCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~p~~-~~-----~~~li~~~~~~g~~~~A~~~~~~m 271 (480)
++.|..+|+.+.++..+..+. .. --..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 455666677666553221111 11 123445677888888888888876
No 309
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.31 E-value=53 Score=23.20 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=28.6
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCChHHH
Q 038395 53 KQGEVAAARVLFDDMEEKDVVCWNVMIDGYAQHGLANEA 91 (480)
Q Consensus 53 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 91 (480)
.....+.|.++++.++.++..+|..++.++.+.+...-|
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 345677888888888888888888888887777754433
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.06 E-value=58 Score=23.29 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHH
Q 038395 157 GSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDAL 194 (480)
Q Consensus 157 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 194 (480)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35778888888888888888888888887667665443
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.71 E-value=1.2e+02 Score=25.52 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 038395 294 ALGEKIAEYLISQNL--ANSGTYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344 (480)
Q Consensus 294 ~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 344 (480)
+....+|..|...+. ..+..|...+..+...|++.+|.++|+.-.+++-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467788888888554 566678899999999999999999998887776543
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.62 E-value=1.7e+02 Score=26.29 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=9.5
Q ss_pred HHHcCCHHHHHHHHHh
Q 038395 255 LSRAGQVEEAYKLVMD 270 (480)
Q Consensus 255 ~~~~g~~~~A~~~~~~ 270 (480)
-++.|+.+-+.-+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455666666666655
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.10 E-value=2.2e+02 Score=25.76 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC
Q 038395 14 TSLVDLYARGGDVLSAEKLFATMPQR 39 (480)
Q Consensus 14 ~~ll~~~~~~g~~~~A~~~~~~m~~~ 39 (480)
+.++.-|...|++++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44555555556666666666655544
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.40 E-value=2.4e+02 Score=23.94 Aligned_cols=28 Identities=4% Similarity=-0.205 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038395 311 SGTYVLLSNIYAAIGNWDGVARVRTLMK 338 (480)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 338 (480)
+......+..+.+.|+-++|.++|=+.+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3344455566667777777777665544
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.38 E-value=1.6e+02 Score=22.71 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=35.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHH
Q 038395 199 EMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 199 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEE
Confidence 35556666554332 3344444445556677777777654 334445555555666777776543
No 316
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.26 E-value=1.5e+02 Score=24.59 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAV--AVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYS 154 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~ 154 (480)
+.+...++.|+.+-+..+++.+.+.|..++..... +.+...+..|+.+-+..+++.-. ..........+.+...+
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA---SPMALDRHGQTAAHLAC 87 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCCHHHHHH
Q ss_pred hCCCHHHHHHHHH-------hcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCC
Q 038395 155 KCGSLKDARLVFD-------RVNDKDVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSDIT---FIGLLSACAHAGL 224 (480)
Q Consensus 155 ~~g~~~~A~~~f~-------~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~ 224 (480)
..|+.+-...+++ .....|...++.+..+..... .++++.+.+.|..++... -...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Q ss_pred HHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHHHHHHHHH
Q 038395 225 VNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVEEAYKLVM 269 (480)
Q Consensus 225 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 269 (480)
.+-...+++.-. .+..........+..-++.|+.+-+..+++
T Consensus 163 ~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSMVQLLLQHGA---NVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHHHHTTC---CTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.88 E-value=3.1e+02 Score=24.40 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 038395 13 STSLVDLYARGGDVLSAEKLFATMPQRS 40 (480)
Q Consensus 13 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 40 (480)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 3456677777777777777777776553
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.47 E-value=1.5e+02 Score=27.19 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCC
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHGL--ANEALVLFRRMLAEKVEP 105 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 105 (480)
.+.++.-|...|+.++|.+.++++..|. .....++..+.-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3555555666666666666666665542 2233333334333222 233555555555554433
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.64 E-value=1.9e+02 Score=22.39 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHhCCCH
Q 038395 98 MLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQVGTALINMYSKCGSL 159 (480)
Q Consensus 98 m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 159 (480)
+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..+..--++.+...|-+
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 44455554332 223344444444455566666666554 4444444444455555655543
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.73 E-value=2.1e+02 Score=22.14 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCccHHHHHHHHHHHcCCHH
Q 038395 200 MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKVEHYGCMVNLLSRAGQVE 262 (480)
Q Consensus 200 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 262 (480)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+.
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 444555543322 23333444444455566666666543 32334444444455566666543
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.86 E-value=3.7e+02 Score=24.23 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCC
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHG-LANEALVLFRRMLAEKVEP 105 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p 105 (480)
...++.-|...|+.++|.+.++++..|. ......+..+.-+.. .-+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4678888999999999999999998774 223333333333322 2345566777777666544
No 322
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.59 E-value=1.1e+02 Score=22.97 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=28.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 038395 94 LFRRMLAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENS 136 (480)
Q Consensus 94 ~~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 136 (480)
+|+.+....+.|+...-..-+..+...++++.|.++|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666666555444444444566778899998888877753
No 323
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.56 E-value=1.6e+02 Score=26.40 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCC
Q 038395 44 LTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHGL--ANEALVLFRRMLAEKVE 104 (480)
Q Consensus 44 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 104 (480)
.+.++.-|...|+.++|.+.++++..|. .....++..+.-+.++ .+.+.+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 3455555666666666666666665541 1223333333333222 23344555555544433
No 324
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.49 E-value=3e+02 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=14.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038395 285 GACRLHGNIALGEKIAEYLISQNLANS 311 (480)
Q Consensus 285 ~a~~~~~~~~~a~~~~~~~~~~~~~~~ 311 (480)
..|.+.|.+++|.+++++.....+.+.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~ 151 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHM 151 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CC
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCch
Confidence 456666777777777766665554443
No 325
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=23.89 E-value=18 Score=23.92 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=18.6
Q ss_pred ceEEEecCCcccccccccccCCC
Q 038395 456 RKIMMRDRNRFHHFVNGTCSCGD 478 (480)
Q Consensus 456 ~~i~~~~~~~~h~~~~g~~s~~~ 478 (480)
+.|=+.|.+..|+|+||+-+-+|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 46778899999999999876443
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.50 E-value=1.9e+02 Score=28.07 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhhcCCcCCc--cHH-HHHHHHHHHcCCHHHHHHHHHhC
Q 038395 210 ITFIGLLSACAHAGLVNEGRRFFNTMKDEYAIEPKV--EHY-GCMVNLLSRAGQVEEAYKLVMDM 271 (480)
Q Consensus 210 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~m 271 (480)
..++.++..|...+.+++|..+.....--..-.++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456777777888888888888777664100000111 111 12234455677788887777665
No 327
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.22 E-value=3.8e+02 Score=24.68 Aligned_cols=300 Identities=15% Similarity=0.151 Sum_probs=142.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCh
Q 038395 15 SLVDLYARGGDVLSAEKLFATMPQR---SLVSLTTMLTCYAKQGEVAAARVLFDDMEEKD---VVCWNVMIDGYAQHGLA 88 (480)
Q Consensus 15 ~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~ 88 (480)
+.+...++.|+.+-+..+++.-... +...++. +...++.|+.+-+.-+++.-..++ ...++.| ...++.|+.
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~ 126 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHV 126 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCH
Confidence 3455566788999888888765432 2223333 344467888888888887654432 2222333 334566776
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCchh--HHHHHHHHHHhCCCHHHHH
Q 038395 89 NEALVLFRRMLAEKVEPN---EVTAVAVLSACGQIGALESGRWIHSYIENSRNIKVNVQ--VGTALINMYSKCGSLKDAR 163 (480)
Q Consensus 89 ~~A~~~~~~m~~~g~~pd---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~ 163 (480)
+-+..+++ .+..++ .... +.+...+..|+.+.+..++ +. |..++.. ...+.+...+..|+.+-..
T Consensus 127 ~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll----~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 196 (437)
T 1n11_A 127 ETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVAELLL----ER-DAHPNAAGKNGLTPLHVAVHHNNLDIVK 196 (437)
T ss_dssp HHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHH----HT-TCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHH----hC-CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 65555443 333222 1111 2334445667776555444 33 4444321 1122344556778887777
Q ss_pred HHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 164 LVFDRVNDK---DVVVWNSMIVGYAMHGFGKDALQLFNEMCRIRLKPSD---ITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 164 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
.+++.-..+ +...++.|. ..+..|+.+-+ +.+.+.|..++. ...+.+. ..+..|..+-...+++.
T Consensus 197 ~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~--- 267 (437)
T 1n11_A 197 LLLPRGGSPHSPAWNGYTPLH-IAAKQNQVEVA----RSLLQYGGSANAESVQGVTPLH-LAAQEGHAEMVALLLSK--- 267 (437)
T ss_dssp HHGGGTCCSCCCCTTCCCHHH-HHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHHTT---
T ss_pred HHHhCCCCCCCcCCCCCCHHH-HHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHH-HHHHCCCHHHHHHHHhc---
Confidence 666654332 222233333 33456665443 344444543332 1122333 33455666555444332
Q ss_pred hcCCcCCcc--HHHHHHHHHHHcCCHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038395 238 EYAIEPKVE--HYGCMVNLLSRAGQVEEAYKLVMDMKIEP---DSVLWGTLLGACRLHGNIALGEKIAEYLISQNLANSG 312 (480)
Q Consensus 238 ~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~li~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 312 (480)
+..++.. .....+...++.|..+-+..+++.- ..+ +..-++.| ...+..|+.+....+++.-...+..+..
T Consensus 268 --~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~ 343 (437)
T 1n11_A 268 --QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPL-HVASHYGNIKLVKFLLQHQADVNAKTKL 343 (437)
T ss_dssp --TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHH-HHHHHSSCSHHHHHHHHTTCCTTCCCTT
T ss_pred --CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCCHH-HHHHHcCcHHHHHHHHhcCCCCCCCCCC
Confidence 3333211 1112233445677777666666542 222 22222333 3344567766554444331111111211
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 038395 313 TYVLLSNIYAAIGNWDGVARVRTLMKEKGVQK 344 (480)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 344 (480)
-...|. .-...|..+ +.+.+.+.|..+
T Consensus 344 g~t~L~-~A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 344 GYSPLH-QAAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp SCCHHH-HHHHTTCHH----HHHHHHHTTCCS
T ss_pred CCCHHH-HHHHCChHH----HHHHHHHCcCCC
Confidence 222222 223455544 445555677654
No 328
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=23.00 E-value=17 Score=18.17 Aligned_cols=13 Identities=54% Similarity=1.487 Sum_probs=8.4
Q ss_pred ccccccc--cCCCCC
Q 038395 468 HFVNGTC--SCGDYW 480 (480)
Q Consensus 468 ~~~~g~~--s~~~~w 480 (480)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5677777 566655
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.35 E-value=1.6e+02 Score=23.29 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=27.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCCchhHHHHHHHHHHhCCC
Q 038395 99 LAEKVEPNEVTAVAVLSACGQIGALESGRWIHSYIENSR-NIKVNVQVGTALINMYSKCGS 158 (480)
Q Consensus 99 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~ 158 (480)
.+.|++++.. -..++..+...+..-.|.++++.+.+.. +...+..|..--++.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555432 2344445555555555666666665420 112233333334455555554
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.30 E-value=1.9e+02 Score=22.87 Aligned_cols=72 Identities=18% Similarity=0.136 Sum_probs=44.1
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhhc-CCcCCccHHHHHHHHHHHcCCHHH
Q 038395 191 KDALQLFNE-MCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKDEY-AIEPKVEHYGCMVNLLSRAGQVEE 263 (480)
Q Consensus 191 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~~~~ 263 (480)
+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+.. +...+..|.---++.+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 444444443 45567777553 3455666667777778888888887531 223455555555677888887643
No 331
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.91 E-value=1.2e+02 Score=25.10 Aligned_cols=16 Identities=0% Similarity=-0.107 Sum_probs=7.3
Q ss_pred HcCChhHHHHHHHHHH
Q 038395 323 AIGNWDGVARVRTLMK 338 (480)
Q Consensus 323 ~~g~~~~a~~~~~~m~ 338 (480)
..|+...+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444443
No 332
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.54 E-value=1.2e+02 Score=22.60 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 038395 195 QLFNEMCRIRLKPSDITFIGLLSACAHAGLVNEGRRFFNTMKD 237 (480)
Q Consensus 195 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 237 (480)
-+|+++....+.|+...-..-+..+...++++.|.+++..+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556666666766655555555566778899999988887764
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.09 E-value=2.6e+02 Score=25.01 Aligned_cols=18 Identities=6% Similarity=-0.224 Sum_probs=11.3
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 038395 253 NLLSRAGQVEEAYKLVMD 270 (480)
Q Consensus 253 ~~~~~~g~~~~A~~~~~~ 270 (480)
..-+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334566777776666664
No 334
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.98 E-value=1.8e+02 Score=20.29 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH
Q 038395 156 CGSLKDARLVFDRVNDKDVVVWNSMIVGYAMHGFGKDA 193 (480)
Q Consensus 156 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 193 (480)
....+.|.++++.++.+...+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677888888888888888888888888777654433
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.74 E-value=3.4e+02 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=10.8
Q ss_pred HHHHHhCCCHHHHHHHHHh
Q 038395 150 INMYSKCGSLKDARLVFDR 168 (480)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~ 168 (480)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344556666666666654
No 336
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.43 E-value=2e+02 Score=26.40 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038395 147 TALINMYSKCGSLKDARLVFDRVNDKD----VVVWNSMIVGYAMHG-FGKDALQLFNEMCRIRLKPSDITFIGLLSACAH 221 (480)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 221 (480)
.+++.-|...|++++|.+.++++..|+ ...+..+..++-+.. .-+.+-.++..+...|+-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCCHH
Q 038395 222 AGLVN 226 (480)
Q Consensus 222 ~g~~~ 226 (480)
..+..
T Consensus 96 l~Dl~ 100 (364)
T 3l6a_A 96 CPKLE 100 (364)
T ss_dssp HHHHH
T ss_pred ChHhc
No 337
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.38 E-value=2.1e+02 Score=22.66 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=9.3
Q ss_pred HHhCCCHHHHHHHHHhc
Q 038395 153 YSKCGSLKDARLVFDRV 169 (480)
Q Consensus 153 y~~~g~~~~A~~~f~~m 169 (480)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34456666666665543
No 338
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.29 E-value=1.7e+02 Score=22.09 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=26.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038395 77 VMIDGYAQHGLANEALVLFRRMLAEKVEPNEVTAVAVLSACGQIG 121 (480)
Q Consensus 77 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~~~~~~~ 121 (480)
.++..+...+.+-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555555566667777777766655556666555555555544
Done!