BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038396
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 163/360 (45%), Gaps = 23/360 (6%)
Query: 46 LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFG 105
LYL NN TG+IP + N + + +L LS N LSG +P LG+ S +L L L N G
Sbjct: 399 LYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEG 456
Query: 106 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
IP + L + L N G IP L NC+ L ++ L NN+++ P W+G + NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225
+L L +N F G I DCR L +DL+ N F G +P+ F + + R
Sbjct: 517 AILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 226 YL-------------QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDI-----L 267
Y+ + + + ++ ++ N R+ + P +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 268 TGIILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSG 327
+ +S N IP I ++ G IP +G+L L LDLS+N+ G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 328 QIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEA 387
+IPQ + T L D+S+N L+G IP QF TF F N GLCG PL + C+ A
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNA 753
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 153/327 (46%), Gaps = 39/327 (11%)
Query: 35 GPLPVPPPETILYL-VSNNSLTGEIPSWICN-LNTVKNLVLSHNNLSGVLPQCLGNFSDE 92
GP+P P +++ YL ++ N TGEIP ++ +T+ L LS N+ G +P G+ S
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 93 LSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEFLDLGNNQ 150
S+ NNF G +P DT +K L V+DLS N F G +P SL N S L LDL +N
Sbjct: 321 ESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 151 ISDTFPSWLGTIPN--LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK 208
S L P L L L++N F G I ++C S+L + LS N +G +PS
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC--SELVSLHLSFNYLSGTIPSS 437
Query: 209 SFLCLDAMKIVNTSQLRYLQDVISPY-GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDIL 267
+ + S+LR L+ ++ G++ +L+ Y K L
Sbjct: 438 ---------LGSLSKLRDLKLWLNMLEGEIPQELM-----------------YVKT---L 468
Query: 268 TGIILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSG 327
+IL N IP+ ++N G IP +G L NL L LSNN FSG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 328 QIPQQLVEFTFLEFFDVSDNYLTGAIP 354
IP +L + L + D++ N G IP
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 136/309 (44%), Gaps = 31/309 (10%)
Query: 49 VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP 108
VS+N+ + IP ++ + + +++L +S N LSG + + + EL +L++ N F G IP
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIP 264
Query: 109 DTFIKESRLGVIDLSHNLFQGRIPRSLVN-CSKLEFLDLGNNQISDTFPSWLGTIPNLNV 167
+K L + L+ N F G IP L C L LDL N P + G+ L
Sbjct: 265 PLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
L L SN F G + T + L ++DLS N F+G+LP +S L A +
Sbjct: 323 LALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNF 380
Query: 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN 287
I P +L N K + L + L +N F IP +++N
Sbjct: 381 SGPILP--------------NLCQNPK----------NTLQELYLQNNGFTGKIPPTLSN 416
Query: 288 LKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
G IPS LG+L+ L L L N G+IPQ+L+ LE + N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 348 YLTGAIPLG 356
LTG IP G
Sbjct: 477 DLTGEIPSG 485
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 113/299 (37%), Gaps = 66/299 (22%)
Query: 111 FIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLG-------- 160
F + L +DLS N G + SL +CS L+FL++ +N + FP +
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSL 153
Query: 161 --------TIPNLNV--------------LILRSNKFYGIIKEPRT-------------- 184
+I NV L + NK G + R
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 185 -------DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQV 237
DC S L +D+S N+ +G S++ +K++N S +++ I P
Sbjct: 214 TGIPFLGDC--SALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP-IPPLPLK 269
Query: 238 STDLISTYDYSLIMNSKGRMMTY-NKIPDILTGIILSSNRFDRVIPTSIANLKGXXXXXX 296
S +S + G + + + D LTG+ LS N F +P +
Sbjct: 270 SLQYLSLAENKF----TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 297 XXXXXXGHIP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF-LEFFDVSDNYLTGAI 353
G +P L + L+ LDLS N FSG++P+ L + L D+S N +G I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
P + + +N ++G IP + +L + L LS N L G +PQ + + L+ +DL N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-MLTEIDLSNN 714
Query: 102 NFFGTIPD 109
N G IP+
Sbjct: 715 NLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 160/412 (38%), Gaps = 87/412 (21%)
Query: 46 LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFG 105
LYL NN TG+IP + N + + +L LS N LSG +P LG+ S +L L L N G
Sbjct: 396 LYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEG 453
Query: 106 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
IP + L + L N G IP L NC+ L ++ L NN+++ P W+G + NL
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225
+L L +N F G I DCR L +DL+ N F G +P+ F
Sbjct: 514 AILKLSNNSFSGNIPAELGDCR--SLIWLDLNTNLFNGTIPAAMF--------------- 556
Query: 226 YLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI 285
G+++ + I+ Y I N G + ++L + S + +R+ +
Sbjct: 557 ------KQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 286 ANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQ----------------- 328
N+ GH N ++ LD+S N SG
Sbjct: 610 CNIT--------SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 329 -------------------------------IPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357
IPQ + T L D+S+N L+G IP
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 358 QFATFDNTSFDGNSGLCGRPLSKGCESDEARANEDHTEGSEESL----FSGA 405
QF TF F N GLCG PL + C+ A H L F GA
Sbjct: 722 QFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENLYFQGA 772
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 153/327 (46%), Gaps = 39/327 (11%)
Query: 35 GPLPVPPPETILYL-VSNNSLTGEIPSWICN-LNTVKNLVLSHNNLSGVLPQCLGNFSDE 92
GP+P P +++ YL ++ N TGEIP ++ +T+ L LS N+ G +P G+ S
Sbjct: 258 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 93 LSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEFLDLGNNQ 150
S+ NNF G +P DT +K L V+DLS N F G +P SL N S L LDL +N
Sbjct: 318 ESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 151 ISDTFPSWLGTIPN--LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK 208
S L P L L L++N F G I ++C S+L + LS N +G +PS
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC--SELVSLHLSFNYLSGTIPSS 434
Query: 209 SFLCLDAMKIVNTSQLRYLQDVISPY-GQVSTDLISTYDYSLIMNSKGRMMTYNKIPDIL 267
+ + S+LR L+ ++ G++ +L+ Y K L
Sbjct: 435 ---------LGSLSKLRDLKLWLNMLEGEIPQELM-----------------YVKT---L 465
Query: 268 TGIILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSG 327
+IL N IP+ ++N G IP +G L NL L LSNN FSG
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 328 QIPQQLVEFTFLEFFDVSDNYLTGAIP 354
IP +L + L + D++ N G IP
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 136/309 (44%), Gaps = 31/309 (10%)
Query: 49 VSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIP 108
VS+N+ + IP ++ + + +++L +S N LSG + + + EL +L++ N F G IP
Sbjct: 204 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIP 261
Query: 109 DTFIKESRLGVIDLSHNLFQGRIPRSLVN-CSKLEFLDLGNNQISDTFPSWLGTIPNLNV 167
+K L + L+ N F G IP L C L LDL N P + G+ L
Sbjct: 262 PLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
L L SN F G + T + L ++DLS N F+G+LP +S L A +
Sbjct: 320 LALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNF 377
Query: 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN 287
I P +L N K + L + L +N F IP +++N
Sbjct: 378 SGPILP--------------NLCQNPK----------NTLQELYLQNNGFTGKIPPTLSN 413
Query: 288 LKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347
G IPS LG+L+ L L L N G+IPQ+L+ LE + N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 348 YLTGAIPLG 356
LTG IP G
Sbjct: 474 DLTGEIPSG 482
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 113/299 (37%), Gaps = 66/299 (22%)
Query: 111 FIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLG-------- 160
F + L +DLS N G + SL +CS L+FL++ +N + FP +
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSL 150
Query: 161 --------TIPNLNV--------------LILRSNKFYGIIKEPRT-------------- 184
+I NV L + NK G + R
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 185 -------DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQV 237
DC S L +D+S N+ +G S++ +K++N S +++ I P
Sbjct: 211 TGIPFLGDC--SALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP-IPPLPLK 266
Query: 238 STDLISTYDYSLIMNSKGRMMTY-NKIPDILTGIILSSNRFDRVIPTSIANLKGXXXXXX 296
S +S + G + + + D LTG+ LS N F +P +
Sbjct: 267 SLQYLSLAENKFT----GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 297 XXXXXXGHIP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTF-LEFFDVSDNYLTGAI 353
G +P L + L+ LDLS N FSG++P+ L + L D+S N +G I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN 101
P + + +N ++G IP + +L + L LS N L G +PQ + + L+ +DL N
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-MLTEIDLSNN 711
Query: 102 NFFGTIPD 109
N G IP+
Sbjct: 712 NLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 50 SNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPD 109
S N+L+G +P I +L + + N +SG +P G+FS + + + N G IP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 110 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169
TF L +DLS N+ +G + + + L N ++ +G NLN L
Sbjct: 193 TF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206
LR+N+ YG + + T +F LH +++S N G++P
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 128/325 (39%), Gaps = 65/325 (20%)
Query: 62 ICNLNT----VKNLVLSHNNLSGV--LPQCLGNFSDELSVLDLQG-NNFFGTIPDTFIKE 114
+C+ +T V NL LS NL +P L N L+ L + G NN G IP K
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKL 100
Query: 115 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174
++L + ++H G IP L L LD N +S T P + ++PNL + N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 175 FYGIIKEPRTDCRFSKLHI-IDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP 233
G I P + FSKL + +S NR TGK+P +F L+ + V+ S+ D
Sbjct: 161 ISGAI--PDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 234 YGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGXXX 293
+G +T L NS + + L G+ L +NR
Sbjct: 217 FGSDK----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI---------------- 256
Query: 294 XXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI 353
G +P L L L SL++S N G+IPQ
Sbjct: 257 --------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---------------------- 286
Query: 354 PLGKQFATFDNTSFDGNSGLCGRPL 378
G FD +++ N LCG PL
Sbjct: 287 --GGNLQRFDVSAYANNKCLCGSPL 309
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NNQ+++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NNQ+++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NNQ+++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NNQ+++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 45/216 (20%)
Query: 150 QISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKS 209
Q S T WLGT +++ + S G+ C S + ++L +RF+ + S +
Sbjct: 220 QNSTTQSLWLGTFEDIDDEDISSAMLKGL-------CEMS-VESLNLQEHRFS-DISSTT 270
Query: 210 FLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTG 269
F C +QL+ L DL +T+ L KG ++L
Sbjct: 271 FQCF--------TQLQEL------------DLTATHLKGLPSGMKGL--------NLLKK 302
Query: 270 IILSSNRFDRVIPTSIANLKGXXXXXXXXXXXXGHI-PSCLGNLTNLESLDLSNNRFSGQ 328
++LS N FD++ S AN H+ CL L NL++LDLS+N
Sbjct: 303 LVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS 362
Query: 329 --IPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATF 362
QL + L+ ++S N PLG Q F
Sbjct: 363 DCCSLQLKNLSHLQTLNLSHNE-----PLGLQSQAF 393
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRL 117
+PS + LN +K LVLS N+ + NF L+ L ++GN +K+ L
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPS-LTHLYIRGN----------VKKLHL 338
Query: 118 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI--SDTFPSWLGTIPNLNVLILRSNKF 175
GV L L+ LDL +N I SD L + +L L L N+
Sbjct: 339 GV-------------GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220
G+ + +C +L ++DL+ R P F L ++++N
Sbjct: 386 LGLQSQAFKEC--PQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NN +++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NN +++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NN +++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NN +++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 77 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NN +++ L + NL+ L+L+ N Y I K
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 190
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124
L + L LSHN L + LG L+VLD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK 180
N + P L KLE L L NN +++ L + NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 107 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLN 166
IPD S + V++L+HN + P + S+L LD G N IS P +P L
Sbjct: 19 IPDDL--PSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 167 VLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
VL L+ N+ I + C + L +DL +N
Sbjct: 77 VLNLQHNELSQISDQTFVFC--TNLTELDLMSN 107
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127
VK LS + + +L +F+D L L L N + F + L ++LS N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
R N KLE LDL N I +PNL L L +N+ +
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDN 364
+P+ + NL+NL LDLS+NR + +P +L L++F DN +T L +F N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT---LPWEFGNLCN 317
Query: 365 TSFDGNSGLCGRPLSK 380
F G+ G PL K
Sbjct: 318 LQF---LGVEGNPLEK 330
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 150
D L+ L L GN+ +P S L V+DLSHN +P L +C +L++ +N
Sbjct: 247 DFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNM 304
Query: 151 ISDTFPSWLGTIPNLNVLILRSN----KFYGIIKE 181
++ T P G + NL L + N +F I+ E
Sbjct: 305 VT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN 88
T LYL + NSLT E+P+ I NL+ ++ L LSHN L+ LP LG+
Sbjct: 250 TRLYL-NGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 23/239 (9%)
Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
++P+ L + L LDL NN+I++ + NL+ LIL +NK I P
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLV 100
Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST--YDY 247
KL + LS N+ +LP K L +++ + + V + Q+ + T
Sbjct: 101 KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 248 SLIMNSK---GRMMTYNKIPDI------------LTGIILSSNRFDRVIPTSIANLKGXX 292
S I N + ++Y +I D LT + L N+ +V S+ L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 293 XXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
L N +L L L+NN+ ++P L + +++ + +N ++
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 56 GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKES 115
E+PS + L+T+K LVLS N + NF L+ L ++GN K
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNT----------KRL 339
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI--SDTFPSWLGTIPNLNVLILRSN 173
LG L N L LDL ++ I SD L + +L L L N
Sbjct: 340 ELGT-------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223
+ + E +C +L ++DL+ R K F L +K++N S
Sbjct: 387 EPLSLKTEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 23/239 (9%)
Query: 130 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFS 189
++P+ L + L LDL NN+I++ + NL+ LIL +NK I P
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLV 100
Query: 190 KLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST--YDY 247
KL + LS N+ +LP K L +++ + + V + Q+ + T
Sbjct: 101 KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 248 SLIMNSK---GRMMTYNKIPDI------------LTGIILSSNRFDRVIPTSIANLKGXX 292
S I N + ++Y +I D LT + L N+ +V S+ L
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 293 XXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351
L N +L L L+NN+ ++P L + +++ + +N ++
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 115 SRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
S L V+ ++ N FQ +P L FLDL Q+ P+ ++ +L VL + N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNR 200
F+ + P C + L ++D S N
Sbjct: 529 NFFSLDTFPY-KC-LNSLQVLDYSLNH 553
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
L ++++HNL Q ++P N + LE LDL +N+I + + L + +
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 115 SRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
S L V+ ++ N FQ +P L FLDL Q+ P+ ++ +L VL + N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNR 200
F+ + P C + L ++D S N
Sbjct: 505 NFFSLDTFPY-KC-LNSLQVLDYSLNH 529
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL 165
L ++++HNL Q ++P N + LE LDL +N+I + + L + +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 115 SRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
S L V+ ++ N FQ +P L FLDL Q+ P+ ++ +L VL + N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 174 KFYGIIKEPRTDCRFSKLHIIDLSNNR 200
F+ + P C + L ++D S N
Sbjct: 210 NFFSLDTFPY-KC-LNSLQVLDYSLNH 234
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 73 LSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 132
+S + L G LP L L+L+ N G P+ F S + + L N +
Sbjct: 44 ISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 133 RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
+ + +L+ L+L +NQIS P + +L L L SN F
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
I L N + P + KL +DL NNQIS+ P + +LN L+L NK +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 180 K 180
K
Sbjct: 97 K 97
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 42/182 (23%)
Query: 59 PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF------- 111
P N+ + LVL N+LS LP+ + + + +L+ L + NN DTF
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 112 ---IKESRLGVIDLS--HNLFQGRIPRSLVNC-------------------------SKL 141
+ +RL +DLS +LF + +L++ +L
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 142 EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201
L L +N ++DT +WL P L + L N+ I+ P + +L + +SNNR
Sbjct: 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRL 284
Query: 202 TG 203
Sbjct: 285 VA 286
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII 179
I L N + P + KL +DL NNQIS+ P + +LN L+L NK +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 180 K 180
K
Sbjct: 97 K 97
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 42/182 (23%)
Query: 59 PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTF------- 111
P N+ + LVL N+LS LP+ + + + +L+ L + NN DTF
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 112 ---IKESRLGVIDLS--HNLFQGRIPRSLVNC-------------------------SKL 141
+ +RL +DLS +LF + +L++ +L
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234
Query: 142 EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201
L L +N ++DT +WL P L + L N+ I+ P + +L + +SNNR
Sbjct: 235 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRL 290
Query: 202 TG 203
Sbjct: 291 VA 292
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 43/250 (17%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 68 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 123
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ + +G
Sbjct: 124 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQL--SFG 163
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 164 NQVTDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 219
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 220 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 273
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 274 NQISNISPLA 283
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFF 104
+LYL ++N L P +L ++ L L+ N L+ VL + L +LD+ N
Sbjct: 484 VLYL-NHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSH--NDLPANLEILDISRNQLL 539
Query: 105 GTIPDTFIKESRLGVIDLSHNLF 127
PD F+ L V+D++HN F
Sbjct: 540 APNPDVFVS---LSVLDITHNKF 559
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 66 NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 125
++V++L LSH + + + D L VL+L N + F L V++LS+N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 126 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
L + K+ ++DL N I+ + L L LR N I
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 28/171 (16%)
Query: 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGN-----NFFGTIPDTFIKESRLGV 119
L V + L N+++ + Q F ++L LDL+ N +F +IPD F+ ++L
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 120 ---IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
I+L+ NL ++ ++LE LD+ +L +P+L +LIL N+F
Sbjct: 396 LPKINLTANLIH-------LSENRLENLDI---------LYFLLRVPHLQILILNQNRFS 439
Query: 177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227
+ +T L + L N +L ++ LC D + ++ Q+ YL
Sbjct: 440 SCSGD-QTPSENPSLEQLFLGENML--QLAWETELCWDVFEGLSHLQVLYL 487
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 43/250 (17%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ + +G
Sbjct: 125 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQL--SFG 164
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 165 NQVTDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 220
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 221 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 275 NQISNISPLA 284
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 93 LSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 151
L VL + GN+F +PD F + L +DLS + P + + S L+ L++ +NQ+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 152 SDTFPSWLGTIPNLNVLILRSN 173
+ +L + L +N
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTN 528
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 115 SRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173
S L V+ ++ N FQ +P L FLDL Q+ P+ ++ +L VL + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 174 KFYGI 178
+ +
Sbjct: 505 QLKSV 509
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF 155
L ++++HNL Q ++P N + LE LDL +N+I +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 141 LEFLDLGNNQISDTF---PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLS 197
LE+LDL N + + + + P+L LILR N + K T L ID+S
Sbjct: 336 LEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDIS 395
Query: 198 NNRF-----TGKLPSKSFLCLDAMKIVNTSQLR 225
N F T + P K MK +N S R
Sbjct: 396 KNSFHSMPETCQWPEK-------MKYLNLSSTR 421
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 71 LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 130
L LSHNNLS + + L L L N+ + F+ L +DLS N
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 131 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD-CRFS 189
+ LE L L NN I + + L L L N+ E D +
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 190 KLHIIDLSNNRFTGKLP 206
KL ++DLS+N+ KLP
Sbjct: 164 KLMLLDLSSNKL-KKLP 179
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 60 SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGV 119
S I L ++K L L+ ++ V P L S+ L VL L N P + L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSN-LQVLYLDLNQITNISP--LAGLTNLQY 161
Query: 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI 178
+ + +N P L N SKL L +N+ISD P L ++PNL + L+ N+ +
Sbjct: 162 LSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDV 216
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 43/250 (17%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ + +G
Sbjct: 120 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQL--NFG 159
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 160 NQVTDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 215
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 216 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 270 NQISNISPLA 279
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 42/250 (16%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ +
Sbjct: 120 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQLSFSSN 161
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
QV TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 162 QV-TDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 217 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 271 NQISNISPLA 280
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 42/250 (16%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ +
Sbjct: 120 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQLSFSSN 161
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
QV TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 162 QV-TDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 217 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 271 NQISNISPLA 280
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 43/250 (17%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ + +G
Sbjct: 120 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQL--NFG 159
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 160 NQVTDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 215
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 216 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 270 NQISNISPLA 279
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 135 LVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194
LV+ +LE L LGNN+I+D + L + L+ L L N+ I+ R +KL +
Sbjct: 128 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVPL----ARLTKLQNL 181
Query: 195 DLSNNRFTGKLPSKSFLCLDAMKIVNTSQL 224
LS N + + LD +++ + L
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQEAL 211
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRL 117
+PS I +N++K LVL+ N+ D+L ++ F ++ D +IK +
Sbjct: 292 LPSGIEGMNSLKKLVLNANSF------------DQLCQINAAS---FPSLRDLYIK-GNM 335
Query: 118 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI--SDTFPSWLGTIPNLNVLILRSNKF 175
+DL R L L+ LDL ++ I SD L + +L L L N+
Sbjct: 336 RKLDLG--------TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEP 387
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223
G+ + +C +L ++D++ K P F L ++++N S
Sbjct: 388 LGLEDQAFKEC--PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 42/250 (16%)
Query: 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L I+ S+N P L N +KL + + NNQI+D P L + NL L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235
I +P + + L+ ++LS+N + I S L LQ +
Sbjct: 120 TDI--DPLKN--LTNLNRLELSSNTIS--------------DISALSGLTSLQQLNFSSN 161
Query: 236 QVSTDLISTYDYSLIMNSKGRM-MTYNKIPDI--------LTGIILSSNRFDRVIPTSIA 286
QV TDL + + + R+ ++ NK+ DI L +I ++N+ + P I
Sbjct: 162 QV-TDLKPLANLTTL----ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 216
Query: 287 NLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346
G L +LTNL LDL+NN+ S P L T L +
Sbjct: 217 TNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 347 NYLTGAIPLG 356
N ++ PL
Sbjct: 271 NQISNISPLA 280
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF 155
L ++++HNL Q ++P N + LE LDL +N+I +
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF 155
L ++++HNL Q ++P N + LE LDL +N+I +
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF 155
L ++++HNL Q ++P N + LE LDL +N+I +
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF 155
L ++++HNL Q ++P N + LE LDL +N+I +
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
L + L N + PR + +KL +L LG N++ + +L L L +N+
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 177 GIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223
+ E D + ++L + L NN+ ++P +F L+ +K++ +
Sbjct: 171 R-VPEGAFD-KLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE 214
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 117 LGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF 155
L ++++HNL Q ++P N + LE LDL +N+I +
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127
V L L N + ++P+ L N+ L+++DL N +F ++L + LS+N
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 128 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176
+ PR+ L L L N IS + L+ L + +N Y
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 117 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175
L + L HN Q L+ SKL L LG+NQI L +P L L L +NK
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 144 LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199
LD NN ++DT G + L LIL+ N+ + K + L +D+S N
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 135 LVNCS------KLEFLDLGNNQISDTF---PSWLGTIPNLNVLILRSNKFYGIIKEPRTD 185
LV CS LEFLDL N + + + + G P+L L+L N + K
Sbjct: 350 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 409
Query: 186 CRFSKLHIIDLSNNRF 201
L +D+S N F
Sbjct: 410 LTLKNLTSLDISRNTF 425
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 135 LVNCS------KLEFLDLGNNQISDTF---PSWLGTIPNLNVLILRSNKFYGIIKEPRTD 185
LV CS LEFLDL N + + + + G P+L L+L N + K
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 186 CRFSKLHIIDLSNNRF 201
L +D+S N F
Sbjct: 384 LTLKNLTSLDISRNTF 399
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 100 GNNFFGTIP--DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS 157
G N T P + K +LG ++ +N +G++P + + KL L+L NQI++ +
Sbjct: 313 GYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371
Query: 158 WLGTIPNLNVLILRSNKFYGI--IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLD- 214
+ G + L NK I I + ++ S ID S N G + K+F LD
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKS---VSVXSAIDFSYNEI-GSVDGKNFDPLDP 427
Query: 215 -AMKIVNTSQLRYLQDVISPY 234
K +N S + + IS +
Sbjct: 428 TPFKGINVSSINLSNNQISKF 448
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200
LE LDL N +S+ SW + +L L L N Y + E +KL I+ + N
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD 160
Query: 201 FTGKLPSKSF 210
K+ K F
Sbjct: 161 TFTKIQRKDF 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,906,570
Number of Sequences: 62578
Number of extensions: 530344
Number of successful extensions: 1466
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 235
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)