Query 038396
Match_columns 456
No_of_seqs 555 out of 4098
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-42 7.7E-47 370.2 28.3 363 2-377 225-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-40 4.8E-45 356.3 27.8 365 1-377 200-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.9E-38 1.7E-42 290.6 5.2 335 6-380 95-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.8E-36 1.5E-40 277.8 3.3 345 16-372 53-404 (873)
5 KOG0444 Cytoskeletal regulator 100.0 2.3E-33 5E-38 263.1 -3.5 331 4-378 46-380 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 1.6E-31 3.4E-36 238.5 -5.1 315 43-372 138-540 (565)
7 KOG0444 Cytoskeletal regulator 100.0 3.4E-30 7.5E-35 241.9 1.5 281 4-354 94-379 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 3.5E-30 7.5E-35 230.0 -5.9 295 41-350 159-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 3.4E-27 7.5E-32 231.1 -0.4 345 4-373 105-489 (1081)
10 KOG4237 Extracellular matrix p 99.9 6.6E-27 1.4E-31 208.8 -1.5 309 36-371 60-380 (498)
11 PRK15387 E3 ubiquitin-protein 99.9 3.4E-24 7.3E-29 216.0 17.5 262 15-355 201-463 (788)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-22 2.9E-27 219.3 23.9 330 7-373 552-906 (1153)
13 KOG4237 Extracellular matrix p 99.9 7.4E-26 1.6E-30 202.1 -1.6 310 47-380 51-366 (498)
14 KOG0618 Serine/threonine phosp 99.9 1.8E-25 3.8E-30 219.2 -0.5 270 41-349 218-488 (1081)
15 PLN03210 Resistant to P. syrin 99.9 5.1E-22 1.1E-26 214.8 24.4 296 4-349 579-905 (1153)
16 PRK15387 E3 ubiquitin-protein 99.9 1.6E-22 3.5E-27 203.9 16.6 257 42-373 201-458 (788)
17 PRK15370 E3 ubiquitin-protein 99.9 1.2E-22 2.7E-27 206.0 14.8 246 15-350 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.9 1.5E-21 3.3E-26 198.2 11.4 232 4-326 192-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.3E-21 7.2E-26 181.8 1.8 161 41-202 22-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 7.9E-21 1.7E-25 179.2 0.2 257 46-351 2-292 (319)
21 KOG0617 Ras suppressor protein 99.8 7.9E-21 1.7E-25 151.2 -6.3 159 41-208 32-191 (264)
22 KOG0617 Ras suppressor protein 99.8 1.9E-20 4.1E-25 149.1 -4.4 159 9-181 29-191 (264)
23 PLN03150 hypothetical protein; 99.7 2.4E-16 5.3E-21 159.7 12.5 118 266-383 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 7.3E-15 1.6E-19 138.1 -3.2 155 41-207 74-228 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 1.1E-14 2.4E-19 136.9 -3.4 176 14-208 74-252 (722)
26 COG4886 Leucine-rich repeat (L 99.4 8.9E-13 1.9E-17 128.0 8.2 198 95-355 97-295 (394)
27 COG4886 Leucine-rich repeat (L 99.3 1.9E-12 4.2E-17 125.6 7.0 174 14-204 115-292 (394)
28 KOG3207 Beta-tubulin folding c 99.3 7E-13 1.5E-17 121.2 0.7 211 113-352 119-341 (505)
29 KOG1259 Nischarin, modulator o 99.2 1.1E-12 2.4E-17 114.3 0.5 87 265-354 329-416 (490)
30 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-12 5.8E-17 107.2 2.6 107 64-176 17-126 (175)
31 PF14580 LRR_9: Leucine-rich r 99.2 1E-11 2.2E-16 103.6 5.9 107 14-128 18-126 (175)
32 KOG1909 Ran GTPase-activating 99.2 9.6E-13 2.1E-17 117.1 -0.3 87 264-350 212-311 (382)
33 KOG1259 Nischarin, modulator o 99.2 3.1E-12 6.8E-17 111.5 1.1 129 66-202 284-412 (490)
34 PLN03150 hypothetical protein; 99.2 5.2E-11 1.1E-15 121.1 8.9 109 67-176 419-528 (623)
35 KOG4658 Apoptotic ATPase [Sign 99.2 2.4E-11 5.3E-16 126.2 5.8 148 15-171 523-676 (889)
36 KOG0531 Protein phosphatase 1, 99.1 5E-12 1.1E-16 123.0 -0.4 247 64-354 70-322 (414)
37 KOG3207 Beta-tubulin folding c 99.1 3.3E-12 7.1E-17 116.9 -1.8 209 136-372 118-338 (505)
38 KOG0531 Protein phosphatase 1, 99.1 7.6E-12 1.7E-16 121.7 -1.2 245 41-330 71-322 (414)
39 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4E-16 109.0 -0.6 212 14-226 29-310 (382)
40 PF13855 LRR_8: Leucine rich r 99.0 1.2E-10 2.6E-15 80.0 3.0 59 290-348 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 99.0 2.8E-10 6.2E-15 78.1 4.3 59 92-150 2-60 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.9 1.5E-09 3.3E-14 113.0 5.3 129 41-174 522-653 (889)
43 KOG1859 Leucine-rich repeat pr 98.8 2.1E-10 4.6E-15 111.4 -5.6 162 6-176 102-292 (1096)
44 KOG1859 Leucine-rich repeat pr 98.8 1.4E-10 3E-15 112.7 -7.0 107 264-376 186-295 (1096)
45 KOG4579 Leucine-rich repeat (L 98.5 5.7E-09 1.2E-13 80.8 -3.4 86 267-355 55-140 (177)
46 KOG4579 Leucine-rich repeat (L 98.4 7.9E-09 1.7E-13 80.1 -3.5 105 44-152 29-136 (177)
47 KOG2982 Uncharacterized conser 98.4 4E-08 8.6E-13 86.2 0.1 110 67-176 46-159 (418)
48 KOG2120 SCF ubiquitin ligase, 98.4 6.8E-09 1.5E-13 90.9 -5.1 87 116-202 186-273 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.4 2.4E-08 5.2E-13 86.4 -2.2 87 264-350 213-316 (388)
50 KOG2120 SCF ubiquitin ligase, 98.4 4.9E-09 1.1E-13 91.8 -7.4 181 139-348 185-374 (419)
51 PRK15386 type III secretion pr 98.3 2.2E-06 4.8E-11 80.7 8.6 137 9-174 48-188 (426)
52 KOG2982 Uncharacterized conser 98.3 3.2E-07 7E-12 80.6 2.5 87 114-201 70-158 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.2 8.1E-07 1.8E-11 77.2 2.8 88 266-353 186-288 (388)
54 KOG1644 U2-associated snRNP A' 98.2 3.4E-06 7.3E-11 70.2 6.0 125 17-148 21-149 (233)
55 KOG1644 U2-associated snRNP A' 98.2 3.5E-06 7.7E-11 70.1 5.4 129 68-200 21-151 (233)
56 PF12799 LRR_4: Leucine Rich r 98.1 1.9E-06 4.1E-11 54.1 2.8 36 314-350 2-37 (44)
57 PRK15386 type III secretion pr 98.1 1.8E-05 4E-10 74.6 9.2 75 87-175 49-124 (426)
58 PF12799 LRR_4: Leucine Rich r 98.0 5E-06 1.1E-10 52.1 3.4 15 63-77 21-35 (44)
59 PF13306 LRR_5: Leucine rich r 97.7 0.00014 3.1E-09 58.2 8.0 116 92-216 13-128 (129)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00021 4.5E-09 57.3 8.1 86 58-148 27-112 (129)
61 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.2E-10 81.5 0.6 138 66-205 122-266 (699)
62 KOG3665 ZYG-1-like serine/thre 97.6 2.6E-05 5.7E-10 79.8 2.2 135 15-153 122-264 (699)
63 KOG2739 Leucine-rich acidic nu 97.3 0.0002 4.3E-09 62.5 3.3 59 92-152 44-104 (260)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.2E-09 62.5 2.1 105 41-148 42-152 (260)
65 KOG2123 Uncharacterized conser 97.1 1.5E-05 3.3E-10 69.7 -5.8 56 93-152 21-76 (388)
66 KOG2123 Uncharacterized conser 97.0 3.9E-05 8.5E-10 67.2 -4.0 100 65-169 18-123 (388)
67 KOG4341 F-box protein containi 95.9 0.00024 5.2E-09 65.9 -5.8 84 265-348 346-437 (483)
68 KOG4341 F-box protein containi 95.8 0.00039 8.5E-09 64.5 -4.9 63 263-325 370-438 (483)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0061 1.3E-07 31.7 1.2 12 93-104 2-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0043 9.3E-08 32.2 0.5 11 316-326 3-13 (22)
71 KOG1947 Leucine rich repeat pr 95.2 0.005 1.1E-07 61.5 -0.0 14 161-174 360-373 (482)
72 KOG4308 LRR-containing protein 94.9 0.00024 5.1E-09 69.7 -10.3 185 17-202 89-303 (478)
73 KOG1947 Leucine rich repeat pr 94.8 0.0029 6.3E-08 63.2 -3.3 109 92-201 189-307 (482)
74 KOG4308 LRR-containing protein 94.7 0.00012 2.6E-09 71.8 -12.8 84 44-127 89-184 (478)
75 KOG0473 Leucine-rich repeat pr 93.8 0.0023 4.9E-08 55.0 -5.3 84 264-350 41-124 (326)
76 PF13504 LRR_7: Leucine rich r 93.7 0.041 9E-07 26.4 1.2 11 93-103 3-13 (17)
77 KOG0473 Leucine-rich repeat pr 93.6 0.0022 4.7E-08 55.1 -5.7 85 62-150 38-122 (326)
78 smart00370 LRR Leucine-rich re 92.0 0.14 3E-06 27.7 2.0 13 67-79 3-15 (26)
79 smart00369 LRR_TYP Leucine-ric 92.0 0.14 3E-06 27.7 2.0 13 67-79 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 91.5 0.17 3.6E-06 27.3 2.0 14 313-326 2-15 (26)
81 smart00370 LRR Leucine-rich re 91.5 0.17 3.6E-06 27.3 2.0 14 313-326 2-15 (26)
82 KOG3864 Uncharacterized conser 90.8 0.052 1.1E-06 45.9 -0.8 83 266-348 102-187 (221)
83 PF13516 LRR_6: Leucine Rich r 90.7 0.094 2E-06 27.7 0.4 13 67-79 3-15 (24)
84 PF02439 Adeno_E3_CR2: Adenovi 88.1 0.7 1.5E-05 27.2 2.7 11 414-424 7-17 (38)
85 smart00365 LRR_SD22 Leucine-ri 87.8 0.52 1.1E-05 25.5 2.0 16 14-29 1-16 (26)
86 KOG4242 Predicted myosin-I-bin 86.8 4 8.7E-05 39.5 8.5 138 67-206 215-371 (553)
87 PF02439 Adeno_E3_CR2: Adenovi 85.8 0.83 1.8E-05 26.9 2.2 30 416-445 5-34 (38)
88 KOG3864 Uncharacterized conser 85.0 0.18 3.9E-06 42.7 -1.1 87 139-226 101-188 (221)
89 PF08374 Protocadherin: Protoc 84.6 1.4 3.1E-05 37.5 4.0 27 407-433 35-61 (221)
90 PF01102 Glycophorin_A: Glycop 84.2 1.2 2.5E-05 34.7 3.1 13 413-425 67-79 (122)
91 KOG4242 Predicted myosin-I-bin 80.7 5.3 0.00011 38.7 6.6 84 267-350 356-453 (553)
92 COG3216 Uncharacterized protei 80.7 2 4.4E-05 35.3 3.4 47 407-453 134-180 (184)
93 smart00364 LRR_BAC Leucine-ric 80.1 1.2 2.6E-05 24.0 1.3 13 314-326 3-15 (26)
94 TIGR00864 PCC polycystin catio 79.9 0.86 1.9E-05 53.3 1.4 38 319-356 1-38 (2740)
95 smart00368 LRR_RI Leucine rich 79.5 1.6 3.6E-05 24.0 1.8 14 15-28 2-15 (28)
96 PF15050 SCIMP: SCIMP protein 78.9 1.5 3.3E-05 33.2 2.0 34 411-446 10-43 (133)
97 KOG3763 mRNA export factor TAP 77.0 1.4 3E-05 43.3 1.7 63 41-105 217-284 (585)
98 PF01102 Glycophorin_A: Glycop 74.5 2.7 5.9E-05 32.8 2.4 35 411-445 61-95 (122)
99 PF04971 Lysis_S: Lysis protei 73.8 5.2 0.00011 27.2 3.2 16 412-427 35-50 (68)
100 PF00558 Vpu: Vpu protein; In 73.0 2.9 6.3E-05 29.7 2.0 10 420-429 13-22 (81)
101 PF08114 PMP1_2: ATPase proteo 72.0 6.8 0.00015 23.4 3.0 9 432-440 29-37 (43)
102 PF01034 Syndecan: Syndecan do 72.0 1.2 2.6E-05 29.8 -0.1 17 413-429 12-28 (64)
103 PF06305 DUF1049: Protein of u 69.6 5.9 0.00013 27.2 3.0 17 413-429 22-38 (68)
104 KOG3763 mRNA export factor TAP 69.6 2.3 4.9E-05 41.9 1.2 60 265-326 218-283 (585)
105 PF05568 ASFV_J13L: African sw 69.3 7.6 0.00016 30.6 3.7 35 416-450 31-65 (189)
106 PF15179 Myc_target_1: Myc tar 68.7 3.3 7.3E-05 34.2 1.8 36 404-439 14-49 (197)
107 PRK09459 pspG phage shock prot 67.3 4.8 0.00011 27.9 2.1 21 431-451 54-74 (76)
108 PF08374 Protocadherin: Protoc 67.1 2.7 5.9E-05 35.8 1.0 8 416-423 40-47 (221)
109 PF01034 Syndecan: Syndecan do 63.7 2 4.3E-05 28.8 -0.3 19 411-429 14-32 (64)
110 PF04478 Mid2: Mid2 like cell 63.1 2.1 4.6E-05 34.4 -0.3 20 410-429 49-68 (154)
111 PF13908 Shisa: Wnt and FGF in 62.7 7.6 0.00016 32.9 3.0 11 341-351 8-18 (179)
112 PF06697 DUF1191: Protein of u 62.1 18 0.0004 32.6 5.3 19 436-454 235-253 (278)
113 PF04995 CcmD: Heme exporter p 60.0 12 0.00026 23.5 2.8 11 410-420 6-16 (46)
114 PF09835 DUF2062: Uncharacteri 59.2 14 0.00031 30.3 3.9 20 429-448 134-153 (154)
115 PF11346 DUF3149: Protein of u 59.0 14 0.0003 22.6 2.8 24 420-443 16-39 (42)
116 PF06305 DUF1049: Protein of u 57.6 19 0.00041 24.6 3.8 12 412-423 25-36 (68)
117 PF06679 DUF1180: Protein of u 56.5 8.7 0.00019 31.7 2.2 12 426-437 106-117 (163)
118 PRK01844 hypothetical protein; 55.1 16 0.00034 25.3 2.8 13 432-444 24-36 (72)
119 PF07213 DAP10: DAP10 membrane 55.0 13 0.00027 26.3 2.4 29 411-439 31-59 (79)
120 PF15176 LRR19-TM: Leucine-ric 54.4 10 0.00023 28.0 2.0 16 432-447 39-54 (102)
121 PF05393 Hum_adeno_E3A: Human 53.4 13 0.00028 26.6 2.3 30 414-444 34-63 (94)
122 PF02009 Rifin_STEVOR: Rifin/s 53.1 18 0.00039 33.3 3.9 11 437-447 281-291 (299)
123 PRK00523 hypothetical protein; 52.5 14 0.0003 25.6 2.2 13 431-443 24-36 (72)
124 smart00367 LRR_CC Leucine-rich 51.7 11 0.00023 20.1 1.4 13 14-26 1-13 (26)
125 TIGR00985 3a0801s04tom mitocho 50.6 13 0.00028 30.2 2.2 37 413-449 9-49 (148)
126 PF04971 Lysis_S: Lysis protei 50.5 17 0.00036 24.8 2.4 30 416-447 35-64 (68)
127 PF03229 Alpha_GJ: Alphavirus 50.2 66 0.0014 24.6 5.6 7 432-438 106-112 (126)
128 PF14851 FAM176: FAM176 family 49.0 7.7 0.00017 31.6 0.8 24 414-437 25-48 (153)
129 PF02009 Rifin_STEVOR: Rifin/s 46.6 21 0.00045 32.9 3.2 22 424-445 271-292 (299)
130 PF03229 Alpha_GJ: Alphavirus 45.2 76 0.0017 24.2 5.3 33 418-450 87-119 (126)
131 PTZ00370 STEVOR; Provisional 45.1 27 0.0006 31.5 3.6 16 433-448 274-289 (296)
132 PF04689 S1FA: DNA binding pro 44.9 17 0.00038 24.2 1.7 21 411-431 15-35 (69)
133 PF10762 DUF2583: Protein of u 42.9 12 0.00025 26.6 0.8 18 432-449 70-87 (89)
134 PRK10692 hypothetical protein; 42.9 11 0.00024 27.0 0.6 18 432-449 70-87 (92)
135 PF14575 EphA2_TM: Ephrin type 42.8 12 0.00026 26.4 0.9 7 418-424 5-11 (75)
136 COG3114 CcmD Heme exporter pro 42.6 33 0.00071 23.1 2.8 35 409-444 17-51 (67)
137 PF03672 UPF0154: Uncharacteri 42.2 42 0.00092 22.7 3.3 11 417-427 5-15 (64)
138 COG3105 Uncharacterized protei 42.0 27 0.00058 27.2 2.6 21 411-431 7-27 (138)
139 PF04478 Mid2: Mid2 like cell 40.7 3.7 8.1E-05 33.1 -2.2 24 408-431 51-74 (154)
140 PHA03265 envelope glycoprotein 40.3 32 0.0007 31.9 3.3 11 434-444 370-380 (402)
141 PF03302 VSP: Giardia variant- 40.1 18 0.00038 35.1 1.9 20 410-429 369-388 (397)
142 PRK11677 hypothetical protein; 39.3 21 0.00046 28.4 1.8 22 412-433 3-24 (134)
143 PRK13415 flagella biosynthesis 39.1 52 0.0011 28.6 4.2 28 416-443 68-95 (219)
144 TIGR01477 RIFIN variant surfac 38.9 30 0.00065 32.5 3.0 21 423-444 322-342 (353)
145 PTZ00046 rifin; Provisional 38.6 30 0.00065 32.6 2.9 21 424-445 328-348 (358)
146 PF15176 LRR19-TM: Leucine-ric 36.6 52 0.0011 24.5 3.3 22 417-438 21-42 (102)
147 PF15086 UPF0542: Uncharacteri 35.6 59 0.0013 22.5 3.2 10 432-441 38-47 (74)
148 PTZ00382 Variant-specific surf 35.4 20 0.00044 26.7 1.1 13 419-431 77-89 (96)
149 PF04277 OAD_gamma: Oxaloaceta 35.2 37 0.00079 24.1 2.4 6 432-437 27-32 (79)
150 TIGR01478 STEVOR variant surfa 33.0 40 0.00087 30.4 2.7 13 433-445 278-290 (295)
151 PF02064 MAS20: MAS20 protein 32.9 15 0.00031 28.8 0.0 30 417-446 3-36 (121)
152 PF13268 DUF4059: Protein of u 31.9 63 0.0014 22.3 2.9 23 418-440 12-34 (72)
153 TIGR00864 PCC polycystin catio 31.8 29 0.00062 41.7 2.0 32 271-302 1-32 (2740)
154 PF02529 PetG: Cytochrome B6-F 31.5 85 0.0018 18.5 2.9 9 432-440 22-30 (37)
155 PF03302 VSP: Giardia variant- 31.1 19 0.00042 34.9 0.5 30 411-440 364-394 (397)
156 CHL00008 petG cytochrome b6/f 30.9 83 0.0018 18.4 2.8 8 432-439 22-29 (37)
157 KOG4056 Translocase of outer m 30.8 37 0.00081 26.9 1.9 20 417-436 15-34 (143)
158 PRK00665 petG cytochrome b6-f 30.0 86 0.0019 18.3 2.8 8 432-439 22-29 (37)
159 PF10389 CoatB: Bacteriophage 29.1 96 0.0021 19.5 3.1 22 418-439 23-44 (46)
160 PRK11677 hypothetical protein; 28.2 21 0.00045 28.5 0.2 24 408-431 3-26 (134)
161 KOG4752 Ribosomal protein L41 28.0 52 0.0011 17.0 1.5 17 434-450 3-19 (26)
162 PF06295 DUF1043: Protein of u 27.5 49 0.0011 26.2 2.2 19 416-434 3-21 (128)
163 COG3105 Uncharacterized protei 27.3 80 0.0017 24.7 3.1 27 419-445 11-37 (138)
164 PF01708 Gemini_mov: Geminivir 26.8 72 0.0016 23.2 2.6 7 408-414 34-40 (91)
165 PF05795 Plasmodium_Vir: Plasm 26.8 62 0.0013 30.6 3.2 10 434-443 305-314 (354)
166 PF04418 DUF543: Domain of unk 26.7 61 0.0013 22.9 2.2 28 412-441 30-57 (75)
167 PF05725 FNIP: FNIP Repeat; I 26.4 1E+02 0.0022 18.9 3.0 12 263-274 10-21 (44)
168 PF07178 TraL: TraL protein; 25.1 36 0.00078 25.3 0.9 31 414-444 29-59 (95)
169 PF15145 DUF4577: Domain of un 24.7 99 0.0022 23.4 3.1 20 408-427 60-79 (128)
170 PF12259 DUF3609: Protein of u 24.2 68 0.0015 30.6 2.8 10 436-445 318-327 (361)
171 PRK04125 murein hydrolase regu 23.5 78 0.0017 25.5 2.6 21 419-439 98-118 (141)
172 PF12768 Rax2: Cortical protei 23.3 65 0.0014 29.5 2.5 8 412-419 227-234 (281)
173 PF11980 DUF3481: Domain of un 23.2 50 0.0011 23.6 1.3 18 408-425 16-33 (87)
174 PF12297 EVC2_like: Ellis van 21.4 67 0.0014 30.9 2.1 45 408-452 63-107 (429)
175 PHA03099 epidermal growth fact 20.8 57 0.0012 25.5 1.3 29 409-438 99-127 (139)
176 PF10577 UPF0560: Uncharacteri 20.2 65 0.0014 33.8 1.9 21 409-429 272-292 (807)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-42 Score=370.21 Aligned_cols=363 Identities=30% Similarity=0.468 Sum_probs=305.4
Q ss_pred ccCCChhhhhhcCCCCCEEEccCCCCC------------------CCCcCccCCCCC---CCCCcEEEccCCccccccch
Q 038396 2 HGKIPKWLLDPSMQYLNALNLSHNLLT------------------SSNNLQGPLPVP---PPETILYLVSNNSLTGEIPS 60 (456)
Q Consensus 2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~ 60 (456)
+|.+|..+.+ +++|++|++++|.++ +.+.+.+.+|.. +++|+.|++++|.+.+.+|.
T Consensus 225 ~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 225 SGEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CCcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 4567777777 777777777777664 233455566644 68899999999999999999
Q ss_pred hhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCC
Q 038396 61 WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 140 (456)
Q Consensus 61 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 140 (456)
.+.++++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 999999999999999999989999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCcccccccc
Q 038396 141 LEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVN 220 (456)
Q Consensus 141 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~ 220 (456)
|+.|++++|.+.+..|..++.+++|+.|++++|++++..+..+ ..++.|+.|++++|.+++.++. .+..+++|+.++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 458 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINS-RKWDMPSLQMLS 458 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccCh-hhccCCCCcEEE
Confidence 9999999999999999999999999999999999998877666 7899999999999999977664 466788999999
Q ss_pred ccCccccccccCCCCCccccccccccceeEeeccCcc---cccccccccccEEEccCCCCCccCchhhhccCCCCeEeCC
Q 038396 221 TSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRM---MTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297 (456)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 297 (456)
+++|.+.......+.. .. ...+....+... ......++.|++|++++|.+.+.+|..+..+++|++|+|+
T Consensus 459 L~~n~~~~~~p~~~~~-----~~--L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 531 (968)
T PLN00113 459 LARNKFFGGLPDSFGS-----KR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531 (968)
T ss_pred CcCceeeeecCccccc-----cc--ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence 9988764322211110 00 111111111111 1112235679999999999999999999999999999999
Q ss_pred CccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396 298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 377 (456)
+|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|...++..+...++.||+.+|+.+
T Consensus 532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-40 Score=356.32 Aligned_cols=365 Identities=32% Similarity=0.444 Sum_probs=310.2
Q ss_pred CccCCChhhhhhcCCCCCEEEccCCCCC------------------CCCcCccCCCCC---CCCCcEEEccCCccccccc
Q 038396 1 IHGKIPKWLLDPSMQYLNALNLSHNLLT------------------SSNNLQGPLPVP---PPETILYLVSNNSLTGEIP 59 (456)
Q Consensus 1 l~g~ip~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~ 59 (456)
++|.+|+.+.+ +++|++|+|++|+++ +.+.+.+.+|.. +++|+.|++++|.+++.+|
T Consensus 200 l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 200 LVGQIPRELGQ--MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CcCcCChHHcC--cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 45789999999 999999999999986 344555666654 7789999999999998999
Q ss_pred hhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCC
Q 038396 60 SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 139 (456)
Q Consensus 60 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 139 (456)
..+.++++|++|++++|.+.+.+|..+..+. +|++|++++|.+++..|..+..+++|+.|++++|++++.+|..+..++
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 9999999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccc
Q 038396 140 KLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIV 219 (456)
Q Consensus 140 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l 219 (456)
+|+.|++++|.+++..|.++..+++|+.|++++|++.+..+..+ ..+++|+.|++++|.+++.+|. .+..++.|+.+
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L 433 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFL 433 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEE
Confidence 99999999999999999999999999999999999998877666 7889999999999999987774 58899999999
Q ss_pred cccCccccccccCCCCCccccccccccceeEeeccCccccc--ccccccccEEEccCCCCCccCchhhhccCCCCeEeCC
Q 038396 220 NTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY--NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLD 297 (456)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 297 (456)
++++|.+.......+... ....... ...+...... ......|+.|++++|.+++..|..+..+++|+.|+|+
T Consensus 434 ~Ls~N~l~~~~~~~~~~l----~~L~~L~--L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 507 (968)
T PLN00113 434 DISNNNLQGRINSRKWDM----PSLQMLS--LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507 (968)
T ss_pred ECcCCcccCccChhhccC----CCCcEEE--CcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECc
Confidence 999987643322211111 1111111 1111100000 0113679999999999999999999999999999999
Q ss_pred CccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCC
Q 038396 298 NNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGR 376 (456)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~ 376 (456)
+|++++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+..+..+++.+|+..+..
T Consensus 508 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 99999999999999999999999999999999999999999999999999999999865 45777888899999877655
Q ss_pred C
Q 038396 377 P 377 (456)
Q Consensus 377 ~ 377 (456)
|
T Consensus 588 p 588 (968)
T PLN00113 588 P 588 (968)
T ss_pred C
Confidence 4
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-38 Score=290.64 Aligned_cols=335 Identities=22% Similarity=0.252 Sum_probs=240.5
Q ss_pred ChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 6 PKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 6 p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
+.+|.+ +++|+++++.+|.++ .+|.. ..+++.|+|.+|.|+..-...+..++.|+.||||.|.|+..-
T Consensus 95 ~~~f~n--l~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~ 165 (873)
T KOG4194|consen 95 FEFFYN--LPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP 165 (873)
T ss_pred HHHHhc--CCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc
Confidence 345677 888888888888887 55554 456899999999998887888899999999999999998333
Q ss_pred ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396 83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162 (456)
Q Consensus 83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 162 (456)
-.+|..-. ++++|+|++|.|+..-...|.++.+|.+|.|+.|+++...+..|..+++|+.|+|..|+|.-.---.|.++
T Consensus 166 ~~sfp~~~-ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 166 KPSFPAKV-NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCC-CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 34555545 79999999999998888889999999999999999997777788889999999999999874445678899
Q ss_pred CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396 163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI 242 (456)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 242 (456)
++|+.|.|..|.+.......| ..+.++++|+|+.|+++ .+...++.++..|+.|++++|.+-..-...+
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-------- 313 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-------- 313 (873)
T ss_pred hhhhhhhhhhcCcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchh--------
Confidence 999999999999888766666 77889999999999988 7777888889999999998887633222111
Q ss_pred ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhc------------------------cCCCCeEeCCC
Q 038396 243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN------------------------LKGLQVLNLDN 298 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~------------------------l~~L~~L~L~~ 298 (456)
.+.++|++|+|+.|++++..+..|.. +++|++|||++
T Consensus 314 -------------------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 314 -------------------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred -------------------hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 12344555555555555555555444 45555555555
Q ss_pred ccccccCCc---cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCC
Q 038396 299 NNLQGHIPS---CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCG 375 (456)
Q Consensus 299 n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~ 375 (456)
|.++..+.+ .|.++++|+.|++.+|+|.......|.+++.|++|||.+|.|...-|.+..-..+..+.+..-..+|+
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD 454 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence 555433322 34455666666666666654444556666666666666666665555432222455555666667899
Q ss_pred CCCCC
Q 038396 376 RPLSK 380 (456)
Q Consensus 376 ~~~~~ 380 (456)
|.+.+
T Consensus 455 Cql~W 459 (873)
T KOG4194|consen 455 CQLKW 459 (873)
T ss_pred ccHHH
Confidence 97665
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-36 Score=277.83 Aligned_cols=345 Identities=21% Similarity=0.220 Sum_probs=272.5
Q ss_pred CCCEEEccCCCCCC--CCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 16 YLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 16 ~L~~L~Ls~N~l~~--~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
+-+.||.+++.+.. ...+.|.+ ++..+.|++++|.+..+.+..|.++++|+++++.+|.++ .+|....... +|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~l---p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg-hl 127 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFL---PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESG-HL 127 (873)
T ss_pred CceeeecCccccccccccccCCcC---ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccc-ce
Confidence 45678999999873 22334444 457788999999999999999999999999999999998 8887544444 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
+.|+|.+|.|+.+..+.+..++.|+.||||.|.|+.+.-.+|..-.++++|+|++|.|+....+.|..+.+|.+|.|+.|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 99999999999888888999999999999999999776677888789999999999999888889999999999999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
+++.++...| .++++|+.|+|..|+|. .+....|.++++|+.+.+..|.+.....+.|-.... .....+....
T Consensus 208 rittLp~r~F--k~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k----me~l~L~~N~ 280 (873)
T KOG4194|consen 208 RITTLPQRSF--KRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK----MEHLNLETNR 280 (873)
T ss_pred cccccCHHHh--hhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecc----cceeecccch
Confidence 9998877666 78999999999999997 665667899999999999888775444333221110 0000000000
Q ss_pred cC-cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396 254 KG-RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ 332 (456)
Q Consensus 254 ~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 332 (456)
.. ....+.--+..|+.|+||+|.|..+.++.++..++|++|+|++|+|+...+..|..+..|++|+|++|.++..-...
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 00 00111112567999999999999999999999999999999999999888888999999999999999988666677
Q ss_pred hhcCCCCCEEeccCCcCcccCCCC----CCCCCCCCcccCCCCC
Q 038396 333 LVEFTFLEFFDVSDNYLTGAIPLG----KQFATFDNTSFDGNSG 372 (456)
Q Consensus 333 l~~l~~L~~L~ls~N~l~~~~p~~----~~~~~l~~~~~~~n~~ 372 (456)
|..+++|+.|||++|.++..+..+ ..++.++.+.+.||..
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 888889999999999988777653 2356666777777753
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-33 Score=263.11 Aligned_cols=331 Identities=27% Similarity=0.351 Sum_probs=272.6
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc-ccchhhhcCCCCCeeecccCcCcccc
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG-EIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
.+|+.+.. +.+|++|.+++|+++ .+.|.+.. ++.|+.+++.+|++.. -+|..+..+..|+.||||+|+++ ..
T Consensus 46 ~vPeEL~~--lqkLEHLs~~HN~L~---~vhGELs~-Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev 118 (1255)
T KOG0444|consen 46 QVPEELSR--LQKLEHLSMAHNQLI---SVHGELSD-LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV 118 (1255)
T ss_pred hChHHHHH--HhhhhhhhhhhhhhH---hhhhhhcc-chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc
Confidence 47888988 999999999999987 34444433 7889999999999863 46778888999999999999998 88
Q ss_pred ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396 83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162 (456)
Q Consensus 83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 162 (456)
|..+.... ++-+|+||+|+|.++....|.+++.|-.||||+|++. .+|..+..+..|++|+|++|.+...--..+-.+
T Consensus 119 P~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm 196 (1255)
T KOG0444|consen 119 PTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM 196 (1255)
T ss_pred chhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence 99998887 8999999999999666667888999999999999998 778889999999999999998864333344456
Q ss_pred CCCCEEEccCCcccc-cCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccc
Q 038396 163 PNLNVLILRSNKFYG-IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL 241 (456)
Q Consensus 163 ~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~ 241 (456)
++|+.|.+++.+-+- -.|..+ ..+.+|..+|+|.|.+. .+| .++..+.+|+.|+++.|.+......
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~--------- 263 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENNLP-IVP-ECLYKLRNLRRLNLSGNKITELNMT--------- 263 (1255)
T ss_pred hhhhhhhcccccchhhcCCCch--hhhhhhhhccccccCCC-cch-HHHhhhhhhheeccCcCceeeeecc---------
Confidence 778888888865432 222233 67889999999999997 666 5678899999999999877322110
Q ss_pred cccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccc-ccCCccccCCCCCCeeeC
Q 038396 242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLDL 320 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 320 (456)
.....+|++|+||.|+++. +|.+++.++.|+.|.+.+|+++ .-+|..++.+..|+.+..
T Consensus 264 -------------------~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 264 -------------------EGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred -------------------HHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 0113569999999999987 7889999999999999999987 457999999999999999
Q ss_pred CCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396 321 SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 321 s~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
++|.+. .+|+.++.+..|+.|.|++|++- .+|.+ ..++.+..+++..||.+..+|-
T Consensus 324 anN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 324 ANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 999998 89999999999999999999997 45555 6788899999999998876654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=1.6e-31 Score=238.54 Aligned_cols=315 Identities=27% Similarity=0.344 Sum_probs=164.7
Q ss_pred CCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396 43 ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122 (456)
Q Consensus 43 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 122 (456)
.+..++..+|+++ ..|.++.++..|..|++.+|+++ .+|+..-.+. .|++||...|-++ .+|..++.+.+|+-|++
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~-~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMK-RLKHLDCNSNLLE-TLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHH-HHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence 3344444444444 33334444444444444444444 3333333343 4555555555555 44555666666666666
Q ss_pred cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCcccc-CCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG-TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
..|++. ..| .|.+|..|.+|+++.|+|. .+|.+.. .++++..||++.|++...+.+ . +.+.+|.+||+|+|.+
T Consensus 214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde-~--clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-I--CLLRSLERLDLSNNDI 287 (565)
T ss_pred hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH-H--HHhhhhhhhcccCCcc
Confidence 666665 444 4666666666666666665 4444433 566666667776666655322 2 4556666677777766
Q ss_pred cCCCChhhhhCccccccccccCccccc---------------cccC----------------------------------
Q 038396 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQ---------------DVIS---------------------------------- 232 (456)
Q Consensus 202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~---------------~~~~---------------------------------- 232 (456)
+ .+|.+ ++++ +|+.+.+.+|+.-. +...
T Consensus 288 s-~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 288 S-SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred c-cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 6 55543 4455 55555555443310 0000
Q ss_pred --------CCCCcccccccccc---ceeEeeccCcccc---------------------------cccccccccEEEccC
Q 038396 233 --------PYGQVSTDLISTYD---YSLIMNSKGRMMT---------------------------YNKIPDILTGIILSS 274 (456)
Q Consensus 233 --------~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------------------~~~~~~~L~~L~Ls~ 274 (456)
....++...+.... .......+....+ ....+++|+.|+|++
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N 444 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN 444 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc
Confidence 00000000000000 0000000001111 111234455566666
Q ss_pred CCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396 275 NRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 275 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 354 (456)
|-+.+ +|..++.+..|+.||++.|++. .+|.++..+..++.+-.++|++....|+.+..+.+|..||+.+|.+....|
T Consensus 445 N~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp 522 (565)
T KOG0472|consen 445 NLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP 522 (565)
T ss_pred chhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence 55554 4555555555666666666655 555555555555555555556654555558888889999999999886666
Q ss_pred CCCCCCCCCCcccCCCCC
Q 038396 355 LGKQFATFDNTSFDGNSG 372 (456)
Q Consensus 355 ~~~~~~~l~~~~~~~n~~ 372 (456)
.-+.++.+..+.+.|||+
T Consensus 523 ~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhccccceeEEEecCCcc
Confidence 667888888888888885
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.4e-30 Score=241.89 Aligned_cols=281 Identities=28% Similarity=0.385 Sum_probs=212.9
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcc
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG 80 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 80 (456)
.||+.+.. +..|..||||+|+++ .+|.. .+++.+|+||+|+|..+.-..|.++..|-.||||+|++.
T Consensus 94 GiP~diF~--l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 94 GIPTDIFR--LKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred CCCchhcc--cccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence 47778878 888888888888887 66655 567788888888888555556778888888888888887
Q ss_pred ccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCc-ccCCccccCCCCCcEEeCcCCcCCcCCCccc
Q 038396 81 VLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSLVNCSKLEFLDLGNNQISDTFPSWL 159 (456)
Q Consensus 81 ~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 159 (456)
.+|..+..+. .|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++.++.+|..+|+|.|.+. ..|+.+
T Consensus 164 ~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 7787788887 7888888888776544445566778888888877543 357778888888888888888887 778888
Q ss_pred cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccc
Q 038396 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239 (456)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~ 239 (456)
-.+++|+.|+|++|+++.... ......+|++|++|.|+++ .+|.. ...++.
T Consensus 242 y~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~k------------------------ 292 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQLT-VLPDA-VCKLTK------------------------ 292 (1255)
T ss_pred hhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccchhc-cchHH-HhhhHH------------------------
Confidence 888888888888888876632 2245568888888888888 77743 444444
Q ss_pred cccccccceeEeeccCcccccccccccccEEEccCCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCee
Q 038396 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 318 (456)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 318 (456)
|+.|++.+|+++- -+|..++.+.+|+++..++|++. ..|+.+..+..|+.|
T Consensus 293 ---------------------------L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 293 ---------------------------LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred ---------------------------HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 5555555555541 16777888888888888888887 888888888888888
Q ss_pred eCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396 319 DLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 319 ~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 354 (456)
.|++|++. .+|+.+.-++.|+.||+..|+-.-..|
T Consensus 345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 88888887 778888888888888888887553333
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=3.5e-30 Score=230.01 Aligned_cols=295 Identities=24% Similarity=0.302 Sum_probs=176.8
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+.++..+++.+|+++...|+.+ +++.|++||+..|.++ .+|+.++.+. +|+.|++.+|+|. ..| .|.++..|++|
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~-~L~~LyL~~Nki~-~lP-ef~gcs~L~El 233 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLE-SLELLYLRRNKIR-FLP-EFPGCSLLKEL 233 (565)
T ss_pred HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchh-hhHHHHhhhcccc-cCC-CCCccHHHHHH
Confidence 4556667777777774444333 3777777777777766 6666676666 6777777777666 444 45566666666
Q ss_pred eccCCcCcccCCccc-cCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396 121 DLSHNLFQGRIPRSL-VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 199 (456)
+++.|++. .+|... ..+.+|..||+.+|+++ ..|+.+..+.+|++||+++|.+++.+. ..+++ +|+.|-+.+|
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~---sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY---SLGNL-HLKFLALEGN 307 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc---ccccc-eeeehhhcCC
Confidence 66666555 333332 25555555566666555 445555555555555555555555422 11344 4555555555
Q ss_pred cC-----------------------------------------------------------------cCCCChhhhhCcc
Q 038396 200 RF-----------------------------------------------------------------TGKLPSKSFLCLD 214 (456)
Q Consensus 200 ~l-----------------------------------------------------------------~~~~~~~~~~~l~ 214 (456)
++ + .+|...|..-+
T Consensus 308 PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~ 386 (565)
T KOG0472|consen 308 PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAK 386 (565)
T ss_pred chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhh
Confidence 43 3 34433333221
Q ss_pred --ccccccccCcccccc-------------ccCCCC--Cc-cccccccccceeEeeccC----cccccccccccccEEEc
Q 038396 215 --AMKIVNTSQLRYLQD-------------VISPYG--QV-STDLISTYDYSLIMNSKG----RMMTYNKIPDILTGIIL 272 (456)
Q Consensus 215 --~l~~l~l~~~~~~~~-------------~~~~~~--~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~L 272 (456)
-...++++.|++... +..... .. +..+.+.....+..-.+. ...++.. ...|+.|++
T Consensus 387 ~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~-lv~Lq~Lnl 465 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS-LVRLQTLNL 465 (565)
T ss_pred hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh-hhhhheecc
Confidence 122233333332110 000000 00 001111111111111111 1122222 345999999
Q ss_pred cCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396 273 SSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 273 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~ 350 (456)
+.|.+.. .|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .+|..++++.+|++|++++|+|.
T Consensus 466 S~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 466 SFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999987 7888888888999988999999777888999999999999999998 78899999999999999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.4e-27 Score=231.06 Aligned_cols=345 Identities=23% Similarity=0.285 Sum_probs=231.9
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCC-----------------CCC-------------------cCccCCCCCCCCCcE-
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLT-----------------SSN-------------------NLQGPLPVPPPETIL- 46 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~-------------------~l~~~~~~~~~~L~~- 46 (456)
..|..+.. +++|++||+|.|++. +.| .+.+.++.....+++
T Consensus 105 ~lP~~~~~--lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ 182 (1081)
T KOG0618|consen 105 SLPASISE--LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQ 182 (1081)
T ss_pred cCchhHHh--hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhee
Confidence 56888888 899999999999887 111 111111111222222
Q ss_pred EEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCc
Q 038396 47 YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 126 (456)
Q Consensus 47 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 126 (456)
|+|.+|.+. . -.+..+.+|+.|.+..|++.... +. . ++|+.|+.++|.++...+. .--.+|+++++++|+
T Consensus 183 ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~---~~-g-~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 183 LDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE---IS-G-PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNN 252 (1081)
T ss_pred eecccchhh-h--hhhhhccchhhhhhhhcccceEE---ec-C-cchheeeeccCcceeeccc--cccccceeeecchhh
Confidence 455555444 1 12344445555555555544111 01 1 2678888888887743332 234689999999999
Q ss_pred CcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396 127 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 127 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 206 (456)
++ .+|+++..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+..+++.. ..+..|++|+|..|.+. .+|
T Consensus 253 l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~l---e~~~sL~tLdL~~N~L~-~lp 326 (1081)
T KOG0618|consen 253 LS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFL---EGLKSLRTLDLQSNNLP-SLP 326 (1081)
T ss_pred hh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcc---cccceeeeeeehhcccc-ccc
Confidence 99 56689999999999999999996 77888888889999999999998875432 56788999999999997 788
Q ss_pred hhhhhCccc-cccccccCccccccccCCCCCcc-ccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchh
Q 038396 207 SKSFLCLDA-MKIVNTSQLRYLQDVISPYGQVS-TDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTS 284 (456)
Q Consensus 207 ~~~~~~l~~-l~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 284 (456)
...+..... +..++.+.++.-... .+.+.. ......+.. ................+|+.|+|++|++...+...
T Consensus 327 ~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~Lyla--nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 327 DNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLA--NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred hHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHh--cCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 765555443 555555544431110 000000 000000000 00000111222233677999999999999888888
Q ss_pred hhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCccc-CCCCCCCCCCC
Q 038396 285 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGA-IPLGKQFATFD 363 (456)
Q Consensus 285 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~l~ 363 (456)
+.++..|++|+||+|+++ .+|..+..++.|+.|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....++++
T Consensus 403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence 899999999999999999 88899999999999999999998 777 788999999999999999843 44444447899
Q ss_pred CcccCCCCCC
Q 038396 364 NTSFDGNSGL 373 (456)
Q Consensus 364 ~~~~~~n~~l 373 (456)
.+++.||.++
T Consensus 480 yLdlSGN~~l 489 (1081)
T KOG0618|consen 480 YLDLSGNTRL 489 (1081)
T ss_pred eeeccCCccc
Confidence 9999999963
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=6.6e-27 Score=208.75 Aligned_cols=309 Identities=21% Similarity=0.215 Sum_probs=215.2
Q ss_pred CCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE-EccCCccceeCCccccC
Q 038396 36 PLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL-DLQGNNFFGTIPDTFIK 113 (456)
Q Consensus 36 ~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L-~Ls~n~i~~~~~~~~~~ 113 (456)
.+|.. ++..+.+.|..|.|+.+.+.+|..+++|+.||||+|+|+.+-|++|.++. .|..| +.++|+|+.+..+.|.+
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhh
Confidence 56766 66788899999999988888999999999999999999988899999988 45544 45559999777788999
Q ss_pred CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCC----------CCC
Q 038396 114 ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK----------EPR 183 (456)
Q Consensus 114 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------~~~ 183 (456)
+..|+.|.+.-|++.-+....|..+++|..|.+-+|.+..+.-..|..+..++.+.+..|.+...-. .+.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 9999999999999988888889999999999999999985545588889999999998887432200 000
Q ss_pred CccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccc
Q 038396 184 TDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKI 263 (456)
Q Consensus 184 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (456)
..+.+....-..+.++++. .++...|... ++.+ .+..... ......-.....+.
T Consensus 219 etsgarc~~p~rl~~~Ri~-q~~a~kf~c~--~esl----------------------~s~~~~~-d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRIN-QEDARKFLCS--LESL----------------------PSRLSSE-DFPDSICPAKCFKK 272 (498)
T ss_pred hcccceecchHHHHHHHhc-ccchhhhhhh--HHhH----------------------HHhhccc-cCcCCcChHHHHhh
Confidence 0112222222223333332 2222211111 0000 0000000 00000011111334
Q ss_pred cccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEe
Q 038396 264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD 343 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 343 (456)
+++|++|+|++|+++++-+.+|.++..+++|.|..|++.......|.++..|+.|+|++|+|+...|..|..+.+|..|+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 67788899999999888888888888999999999988877777888888899999999999888888888888899999
Q ss_pred ccCCcCcccCCCCCCCCCCCCcccCCCC
Q 038396 344 VSDNYLTGAIPLGKQFATFDNTSFDGNS 371 (456)
Q Consensus 344 ls~N~l~~~~p~~~~~~~l~~~~~~~n~ 371 (456)
+-.|++.+.+-..+.-.+++.-+-.|||
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hccCcccCccchHHHHHHHhhCCCCCCC
Confidence 9888888776554433334333333443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.92 E-value=3.4e-24 Score=216.01 Aligned_cols=262 Identities=23% Similarity=0.310 Sum_probs=200.1
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
..-..|||+.|.|+ .+|.. .++++.|++++|+++ .+|. ..++|++|++++|+++ .+|.. +++|
T Consensus 201 ~~~~~LdLs~~~Lt-------sLP~~l~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL 264 (788)
T PRK15387 201 NGNAVLNVGESGLT-------TLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL----PPGL 264 (788)
T ss_pred CCCcEEEcCCCCCC-------cCCcchhcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc----cccc
Confidence 45778999999987 45554 467999999999999 4554 2578999999999998 56642 2389
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++|
T Consensus 265 ~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 265 LELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN 332 (788)
T ss_pred ceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccC
Confidence 99999999988 44543 357889999999998 4554 24789999999999985 4532 246888999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
.+++++. + ..+|+.|++++|+++ .+|.. ..+++.|++++|.+..
T Consensus 333 ~L~~LP~--l----p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~------------------------- 376 (788)
T PRK15387 333 QLTSLPT--L----PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS------------------------- 376 (788)
T ss_pred ccccccc--c----ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-------------------------
Confidence 9987642 1 257999999999998 66642 2355666666654410
Q ss_pred cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333 (456)
Q Consensus 254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l 333 (456)
+...+..|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|+|+ .+|..+
T Consensus 377 ------LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl 441 (788)
T PRK15387 377 ------LPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESL 441 (788)
T ss_pred ------CcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHH
Confidence 11124569999999999997 4432 368999999999999 466543 47889999999998 789999
Q ss_pred hcCCCCCEEeccCCcCcccCCC
Q 038396 334 VEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 334 ~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
..+++|+.|++++|++++..|.
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhccCCCeEECCCCCCCchHHH
Confidence 9999999999999999987664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-22 Score=219.27 Aligned_cols=330 Identities=20% Similarity=0.266 Sum_probs=216.9
Q ss_pred hhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC----CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 7 KWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP----PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 7 ~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~----~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
..|.. |++|+.|.+.++.....+.....+|.. +.+|+.|.+.++.++ .+|..| ...+|++|++++|.+. .+
T Consensus 552 ~aF~~--m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 552 NAFKG--MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHhc--CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 35777 999999999877654222333334432 567999999999988 667776 5789999999999998 78
Q ss_pred ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396 83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162 (456)
Q Consensus 83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 162 (456)
+.++..+. +|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++
T Consensus 627 ~~~~~~l~-~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLT-GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCC-CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 88888888 899999998765546664 7889999999999987666889999999999999999976545677655 78
Q ss_pred CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396 163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI 242 (456)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 242 (456)
++|+.|++++|......+. ...+|++|++++|.+. .+|... .+++|..|.+..+...... ........
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~-~~~~~l~~--- 771 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLW-ERVQPLTP--- 771 (1153)
T ss_pred CCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhcc-ccccccch---
Confidence 9999999999865443332 2468999999999987 777532 4666766666553321100 00000000
Q ss_pred ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccc-------------
Q 038396 243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL------------- 309 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l------------- 309 (456)
.....+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+
T Consensus 772 ----------------~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 772 ----------------LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred ----------------hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 000112345555555544444444445555555555555443222333222
Q ss_pred -------cCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC-CcCcccCCCCCCCCCCCCcccCCCCCC
Q 038396 310 -------GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD-NYLTGAIPLGKQFATFDNTSFDGNSGL 373 (456)
Q Consensus 310 -------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~-N~l~~~~p~~~~~~~l~~~~~~~n~~l 373 (456)
...++|++|+|++|.++ .+|..+..+++|+.|++++ |.+.+..+....++.+..+.+.+++.+
T Consensus 836 ~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 836 SRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 01245666777777776 5677777788888888877 444443333345666666666666554
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=7.4e-26 Score=202.06 Aligned_cols=310 Identities=20% Similarity=0.184 Sum_probs=199.1
Q ss_pred EEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC-C
Q 038396 47 YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH-N 125 (456)
Q Consensus 47 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-N 125 (456)
.+-++-.++ .+|..+. +.-.+++|..|+|+...|.+|..+. +|+.|||++|.|+.+.|++|.++.+|..|-+.+ |
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~-~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLH-RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchh-hhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 344444455 4454332 3556677888888744455666676 788888888888877778888877776666555 7
Q ss_pred cCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCC
Q 038396 126 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL 205 (456)
Q Consensus 126 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 205 (456)
+|+......|.++..|+.|.+.-|++.-...++|..+++|..|.+.+|.+..+....+ ..+..++.+.+..|.+...
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icd- 203 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICD- 203 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc--cchhccchHhhhcCccccc-
Confidence 7776666677788888888888887776667777778888888887877776655444 5666777777777764311
Q ss_pred ChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEE---EccCCCCCcc-C
Q 038396 206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI---ILSSNRFDRV-I 281 (456)
Q Consensus 206 ~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L---~Ls~n~l~~~-~ 281 (456)
.+++.+.... ..+. ..+.......+ +..... ........++...++.+ ..+.+....+ +
T Consensus 204 -----CnL~wla~~~-a~~~------ietsgarc~~p--~rl~~~---Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 204 -----CNLPWLADDL-AMNP------IETSGARCVSP--YRLYYK---RINQEDARKFLCSLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred -----cccchhhhHH-hhch------hhcccceecch--HHHHHH---HhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence 1111110000 0000 00000000000 000000 00000001111112222 1223323333 4
Q ss_pred chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCC
Q 038396 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFA 360 (456)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~ 360 (456)
...|..+++|++|+|++|+++++-+.+|.+...+++|.|..|+|.......|.++..|+.|+|.+|+|++.-|-. ....
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 467899999999999999999999999999999999999999998777788999999999999999999888854 3455
Q ss_pred CCCCcccCCCCCCCCCCCCC
Q 038396 361 TFDNTSFDGNSGLCGRPLSK 380 (456)
Q Consensus 361 ~l~~~~~~~n~~lc~~~~~~ 380 (456)
.+..+.+.+||+.|+|.+.+
T Consensus 347 ~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred eeeeeehccCcccCccchHH
Confidence 66777899999999997544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-25 Score=219.19 Aligned_cols=270 Identities=26% Similarity=0.306 Sum_probs=172.2
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
-++++.|+.++|.++...+.. --.+|+++++++|+++ .+|+.++.+. +|+.+++.+|.++ .+|..+....+|+.|
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred CcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 456666666677666332221 1246777777777777 6667777777 7777777777775 666666677777777
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC-CCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN-LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 199 (456)
.+.+|.+. .+|....+++.|++|||..|.|....+..+.-... |+.|+.+.|++...+...- ..++.|+.|.+.+|
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e--~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE--NNHAALQELYLANN 369 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc--hhhHHHHHHHHhcC
Confidence 77777777 55666667777777777777776332222222222 5556666666554432211 34455666666666
Q ss_pred cCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCc
Q 038396 200 RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR 279 (456)
Q Consensus 200 ~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 279 (456)
.++.. ....+.+..+|++|++++|++-..-... ..-++.|++|+||+|+++.
T Consensus 370 ~Ltd~-c~p~l~~~~hLKVLhLsyNrL~~fpas~---------------------------~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 370 HLTDS-CFPVLVNFKHLKVLHLSYNRLNSFPASK---------------------------LRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred ccccc-chhhhccccceeeeeecccccccCCHHH---------------------------HhchHHhHHHhcccchhhh
Confidence 66532 1123555666666666665441111111 1113458888888888887
Q ss_pred cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcC
Q 038396 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349 (456)
Q Consensus 280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l 349 (456)
+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-.....-++|++||++||..
T Consensus 422 -Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 422 -LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 5688888888999999999888 667 678888899999999988754332222337899999998874
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.1e-22 Score=214.85 Aligned_cols=296 Identities=19% Similarity=0.214 Sum_probs=204.3
Q ss_pred CCChhhhhhcC-CCCCEEEccCCCCCCCCcCccCCCCC--CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcc
Q 038396 4 KIPKWLLDPSM-QYLNALNLSHNLLTSSNNLQGPLPVP--PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG 80 (456)
Q Consensus 4 ~ip~~~~~~~l-~~L~~L~Ls~N~l~~~~~l~~~~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 80 (456)
.+|+.|.. + .+|+.|++.++.++ .+|.. +.+|+.|++++|.+. .++..+..+++|+.|+|+++....
T Consensus 579 ~lp~~~~~--lp~~Lr~L~~~~~~l~-------~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 579 HLPEGFDY--LPPKLRLLRWDKYPLR-------CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ecCcchhh--cCcccEEEEecCCCCC-------CCCCcCCccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcC
Confidence 45666666 4 35888888888776 44433 567888888888877 566667778888888887765433
Q ss_pred ccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCcccc
Q 038396 81 VLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 160 (456)
Q Consensus 81 ~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 160 (456)
.+|. +..++ +|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|......|..
T Consensus 649 ~ip~-ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-- 723 (1153)
T PLN03210 649 EIPD-LSMAT-NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-- 723 (1153)
T ss_pred cCCc-cccCC-cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--
Confidence 5664 55666 78888888776555677777788888888888765444566554 6777777777777654444432
Q ss_pred CCCCCCEEEccCCcccccCCCC---------------------------CCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396 161 TIPNLNVLILRSNKFYGIIKEP---------------------------RTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213 (456)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~---------------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 213 (456)
..+|++|++++|.+..++... ......++|+.|++++|...+.+|.. +.++
T Consensus 724 -~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L 801 (1153)
T PLN03210 724 -STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNL 801 (1153)
T ss_pred -cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCC
Confidence 346677777777665443210 00012356777777777666566644 6777
Q ss_pred cccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCe
Q 038396 214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQV 293 (456)
Q Consensus 214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 293 (456)
++|+.|++++|..+..+... ..+++|+.|++++|......|.. .++|+.
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~~----------------------------~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPTG----------------------------INLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred CCCCEEECCCCCCcCeeCCC----------------------------CCccccCEEECCCCCcccccccc---ccccCE
Confidence 77777777765542221110 02567999999998655444442 368999
Q ss_pred EeCCCccccccCCccccCCCCCCeeeCCCC-cccccCchhhhcCCCCCEEeccCCcC
Q 038396 294 LNLDNNNLQGHIPSCLGNLTNLESLDLSNN-RFSGQIPQQLVEFTFLEFFDVSDNYL 349 (456)
Q Consensus 294 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~ls~N~l 349 (456)
|+|++|.++ .+|.++..+++|+.|+|++| ++. .+|..+..+++|+.+++++|.-
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCcc
Confidence 999999998 78999999999999999996 555 6777888999999999999863
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.6e-22 Score=203.92 Aligned_cols=257 Identities=25% Similarity=0.336 Sum_probs=199.1
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
..-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++. +|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccccceee
Confidence 34668999999999 6777665 48999999999999 67752 3489999999999994 4543 46899999
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
+++|.++ .+|..+ ++|+.|++++|+++ .+|. ..++|+.|++++|++++++.. ...|+.|++++|.+
T Consensus 269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L 334 (788)
T PRK15387 269 IFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQL 334 (788)
T ss_pred ccCCchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC------cccccccccccCcc
Confidence 9999998 455433 67899999999998 4554 357899999999999976432 24688999999999
Q ss_pred cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281 (456)
Q Consensus 202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 281 (456)
+ .+|.. ..+|+.|++++|.+.. ++..+.+|+.|++++|.++. +
T Consensus 335 ~-~LP~l----p~~Lq~LdLS~N~Ls~-------------------------------LP~lp~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 335 T-SLPTL----PSGLQELSVSDNQLAS-------------------------------LPTLPSELYKLWAYNNRLTS-L 377 (788)
T ss_pred c-ccccc----ccccceEecCCCccCC-------------------------------CCCCCcccceehhhcccccc-C
Confidence 8 67741 2478888888876521 11224568999999999997 4
Q ss_pred chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCC
Q 038396 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFA 360 (456)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~ 360 (456)
|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|.. ..+.
T Consensus 378 P~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~ 445 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLS 445 (788)
T ss_pred ccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhcc
Confidence 543 357999999999999 45643 358999999999998 467543 46889999999998 56653 5577
Q ss_pred CCCCcccCCCCCC
Q 038396 361 TFDNTSFDGNSGL 373 (456)
Q Consensus 361 ~l~~~~~~~n~~l 373 (456)
.+..+++.+|+..
T Consensus 446 ~L~~LdLs~N~Ls 458 (788)
T PRK15387 446 SETTVNLEGNPLS 458 (788)
T ss_pred CCCeEECCCCCCC
Confidence 8888899999864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.89 E-value=1.2e-22 Score=206.04 Aligned_cols=246 Identities=24% Similarity=0.382 Sum_probs=178.5
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
.+...|++++++++ .+|.. ++.++.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|
T Consensus 178 ~~~~~L~L~~~~Lt-------sLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L 243 (754)
T PRK15370 178 NNKTELRLKILGLT-------TIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTI 243 (754)
T ss_pred cCceEEEeCCCCcC-------cCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccc
Confidence 45788999999887 44542 567899999999998 4565543 58999999999998 6777654 279
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSN 314 (754)
T ss_pred cEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCC
Confidence 99999999988 5666553 57899999999998 5666554 589999999999884 454432 47888899999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
.++.++.. ..++|+.|++++|.++ .+|...
T Consensus 315 ~Lt~LP~~-----l~~sL~~L~Ls~N~Lt-~LP~~l-------------------------------------------- 344 (754)
T PRK15370 315 SLTALPET-----LPPGLKTLEAGENALT-SLPASL-------------------------------------------- 344 (754)
T ss_pred ccccCCcc-----ccccceeccccCCccc-cCChhh--------------------------------------------
Confidence 88865322 2367888889888887 455321
Q ss_pred cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333 (456)
Q Consensus 254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l 333 (456)
+++|+.|++++|+++. +|..+. +.|+.|+|++|+++ .+|..+. ..|+.|++++|+++ .+|..+
T Consensus 345 ----------~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 345 ----------PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred ----------cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 2347788888888775 444442 57888888888887 5565554 36788888888887 455443
Q ss_pred ----hcCCCCCEEeccCCcCc
Q 038396 334 ----VEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 334 ----~~l~~L~~L~ls~N~l~ 350 (456)
..++.+..+++.+|+++
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 33467788888888876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=1.5e-21 Score=198.16 Aligned_cols=232 Identities=27% Similarity=0.430 Sum_probs=179.5
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
.+|..+ .++|+.|+|++|+|+ .+|.. .++|+.|++++|+++ .+|..+. .+|+.|+|++|.++ .+
T Consensus 192 sLP~~I----p~~L~~L~Ls~N~Lt-------sLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~L 256 (754)
T PRK15370 192 TIPACI----PEQITTLILDNNELK-------SLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-EL 256 (754)
T ss_pred cCCccc----ccCCcEEEecCCCCC-------cCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cC
Confidence 456555 357999999999998 34443 568999999999999 5676554 47999999999998 78
Q ss_pred ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396 83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162 (456)
Q Consensus 83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 162 (456)
|..+. . +|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+ .
T Consensus 257 P~~l~--s-~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~ 324 (754)
T PRK15370 257 PERLP--S-ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--P 324 (754)
T ss_pred ChhHh--C-CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--c
Confidence 87764 3 7999999999999 5676554 58999999999999 4565543 579999999999984 55443 3
Q ss_pred CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396 163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI 242 (456)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 242 (456)
++|+.|++++|.+++++. .+ .++|+.|++++|.++ .+|...
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~-~l----~~sL~~L~Ls~N~L~-~LP~~l--------------------------------- 365 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA-SL----PPELQVLDVSKNQIT-VLPETL--------------------------------- 365 (754)
T ss_pred ccceeccccCCccccCCh-hh----cCcccEEECCCCCCC-cCChhh---------------------------------
Confidence 689999999999987642 22 378999999999998 566321
Q ss_pred ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccc----cCCCCCCee
Q 038396 243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCL----GNLTNLESL 318 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L 318 (456)
++.|+.|++++|.++.+ |..+. ..|+.|++++|+++ .+|..+ ..++.+..|
T Consensus 366 ---------------------p~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 366 ---------------------PPTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred ---------------------cCCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 23488889999988874 44443 36888999999988 555544 345788899
Q ss_pred eCCCCccc
Q 038396 319 DLSNNRFS 326 (456)
Q Consensus 319 ~Ls~N~l~ 326 (456)
++.+|.++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 99999887
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=3.3e-21 Score=181.79 Aligned_cols=161 Identities=24% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCCcEEEccCCccccc----cchhhhcCCCCCeeecccCcCcc------ccChhhhhCCCCCcEEEccCCccceeCCcc
Q 038396 41 PPETILYLVSNNSLTGE----IPSWICNLNTVKNLVLSHNNLSG------VLPQCLGNFSDELSVLDLQGNNFFGTIPDT 110 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~ 110 (456)
+..++.++++++.+++. ++..+...++|++|+++++.+.+ .++..+..+. +|++|++++|.+.+..+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC-GLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC-ceeEEEccCCCCChhHHHH
Confidence 34466666666665322 33344455556666666665541 2233444444 5666666666665433333
Q ss_pred ccCCCC---ccEEeccCCcCcc----cCCccccCC-CCCcEEeCcCCcCCcC----CCccccCCCCCCEEEccCCccccc
Q 038396 111 FIKESR---LGVIDLSHNLFQG----RIPRSLVNC-SKLEFLDLGNNQISDT----FPSWLGTIPNLNVLILRSNKFYGI 178 (456)
Q Consensus 111 ~~~l~~---L~~L~Ls~N~l~~----~~~~~l~~l-~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 178 (456)
+..+.+ |++|++++|++++ .+...+..+ ++|++|++++|.+++. .+..+..+++|++|++++|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 333333 6666666666552 122233444 5666666666665522 122334445566666666655431
Q ss_pred CCCCC--CccCCCCccEEecccccCc
Q 038396 179 IKEPR--TDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 179 ~~~~~--~~~~l~~L~~L~ls~n~l~ 202 (456)
....+ ....+++|+.|++++|.++
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccC
Confidence 10000 0122345666666665554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=7.9e-21 Score=179.23 Aligned_cols=257 Identities=25% Similarity=0.215 Sum_probs=168.0
Q ss_pred EEEccCCccc-cccchhhhcCCCCCeeecccCcCccc----cChhhhhCCCCCcEEEccCCccce------eCCccccCC
Q 038396 46 LYLVSNNSLT-GEIPSWICNLNTVKNLVLSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFFG------TIPDTFIKE 114 (456)
Q Consensus 46 ~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~------~~~~~~~~l 114 (456)
.|+|..+.++ ......+..+.+|++|+++++.+++. ++..+...+ .|++|+++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4566677776 34456677788899999999998542 444455555 79999999988762 234556778
Q ss_pred CCccEEeccCCcCcccCCccccCCCC---CcEEeCcCCcCCc----CCCccccCC-CCCCEEEccCCcccccCCC--CCC
Q 038396 115 SRLGVIDLSHNLFQGRIPRSLVNCSK---LEFLDLGNNQISD----TFPSWLGTI-PNLNVLILRSNKFYGIIKE--PRT 184 (456)
Q Consensus 115 ~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~Ls~n~i~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~--~~~ 184 (456)
++|+.|++++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++.... ...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 89999999999987655555555555 9999999998873 222345566 8899999999988742111 111
Q ss_pred ccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccc
Q 038396 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP 264 (456)
Q Consensus 185 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (456)
+..+++|++|++++|.+++.........+. ..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~------------------------------------------------~~ 192 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLK------------------------------------------------AN 192 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHH------------------------------------------------hC
Confidence 245578899999998887421111111111 01
Q ss_pred ccccEEEccCCCCCccC----chhhhccCCCCeEeCCCccccccCCcccc-----CCCCCCeeeCCCCcccc----cCch
Q 038396 265 DILTGIILSSNRFDRVI----PTSIANLKGLQVLNLDNNNLQGHIPSCLG-----NLTNLESLDLSNNRFSG----QIPQ 331 (456)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~----~~~~ 331 (456)
+.|+.|++++|.+++.. ...+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+..
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 34777777777776432 23445667788888888877653332222 13678888888887752 2334
Q ss_pred hhhcCCCCCEEeccCCcCcc
Q 038396 332 QLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 332 ~l~~l~~L~~L~ls~N~l~~ 351 (456)
.+..+++|+++++++|.++.
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhcCCCccEEECCCCCCcH
Confidence 45566778888888887764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=7.9e-21 Score=151.24 Aligned_cols=159 Identities=28% Similarity=0.463 Sum_probs=129.0
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+..++.|.+|+|+++ .+|..+..+.+|+.|++++|+++ .+|.++..++ +|+.|+++-|++. +.|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~-klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLP-KLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhch-hhhheecchhhhh-cCccccCCCchhhhh
Confidence 567778888888888 66667888888888888888888 7888888888 7888888888887 788888888888888
Q ss_pred eccCCcCcc-cCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396 121 DLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199 (456)
Q Consensus 121 ~Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 199 (456)
|+++|++.+ .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.++.|.+-..+.+ .+.+..|++|.+.+|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpke---ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKE---IGDLTRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHH---HHHHHHHHHHhcccc
Confidence 888888874 56777888888888888888886 7788888888888888888887665332 267788888888888
Q ss_pred cCcCCCChh
Q 038396 200 RFTGKLPSK 208 (456)
Q Consensus 200 ~l~~~~~~~ 208 (456)
+++ .+|..
T Consensus 184 rl~-vlppe 191 (264)
T KOG0617|consen 184 RLT-VLPPE 191 (264)
T ss_pred eee-ecChh
Confidence 888 67754
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-20 Score=149.08 Aligned_cols=159 Identities=30% Similarity=0.497 Sum_probs=142.1
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChh
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQC 85 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 85 (456)
+.+ ++++..|-||+|+++ .+|.. +.+|+.|++++|+|+ ..|..++.++.|+.|++.-|++. .+|.+
T Consensus 29 Lf~--~s~ITrLtLSHNKl~-------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg 97 (264)
T KOG0617|consen 29 LFN--MSNITRLTLSHNKLT-------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG 97 (264)
T ss_pred ccc--hhhhhhhhcccCcee-------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc
Confidence 556 788999999999998 55554 788999999999999 78889999999999999999998 99999
Q ss_pred hhhCCCCCcEEEccCCccce-eCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396 86 LGNFSDELSVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN 164 (456)
Q Consensus 86 ~~~l~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 164 (456)
|+.++ .|+.||+++|++.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.
T Consensus 98 fgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 98 FGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred cCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 99998 89999999998874 47888989999999999999998 88899999999999999999987 78999999999
Q ss_pred CCEEEccCCcccccCCC
Q 038396 165 LNVLILRSNKFYGIIKE 181 (456)
Q Consensus 165 L~~L~L~~n~l~~~~~~ 181 (456)
|++|++.+|+++-.+|+
T Consensus 175 lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHhcccceeeecChh
Confidence 99999999999876554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=159.69 Aligned_cols=118 Identities=36% Similarity=0.687 Sum_probs=106.1
Q ss_pred cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396 266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS 345 (456)
Q Consensus 266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls 345 (456)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCC--CCCCCCCcccCCCCCCCCCCCCCCCC
Q 038396 346 DNYLTGAIPLGK--QFATFDNTSFDGNSGLCGRPLSKGCE 383 (456)
Q Consensus 346 ~N~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~c~ 383 (456)
+|+++|.+|... ....+..+++.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999652 23345567899999999977655564
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=7.3e-15 Score=138.08 Aligned_cols=155 Identities=29% Similarity=0.496 Sum_probs=110.8
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+......|++.|++. .+|..+..+..|+.+.|..|.+. .+|.+++.+. .|++||++.|+++ ..|..++.++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 455666777788877 67777777777777888888877 7777777777 7888888888877 5666665554 7777
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 200 (456)
-+++|+++ .+|..++...+|..||.+.|.+. .+|..++++.+|+.|.++.|++..++++. . .-.|..||++.|+
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El---~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEEL---C-SLPLIRLDFSCNK 222 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHH---h-CCceeeeecccCc
Confidence 88888877 67777777777888888888776 56667777777777777777776654432 2 2246667777777
Q ss_pred CcCCCCh
Q 038396 201 FTGKLPS 207 (456)
Q Consensus 201 l~~~~~~ 207 (456)
+. .+|.
T Consensus 223 is-~iPv 228 (722)
T KOG0532|consen 223 IS-YLPV 228 (722)
T ss_pred ee-ecch
Confidence 66 5553
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=1.1e-14 Score=136.85 Aligned_cols=176 Identities=27% Similarity=0.376 Sum_probs=151.2
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS 90 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 90 (456)
+..-...||+.|++. .+|.. +..|+.+.+.+|.+. .+|.++.++..|++|||+.|+++ .+|..++.++
T Consensus 74 ltdt~~aDlsrNR~~-------elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-------ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP 144 (722)
T ss_pred ccchhhhhccccccc-------cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence 455667889999886 66665 567888899999998 88999999999999999999998 9999999997
Q ss_pred CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEc
Q 038396 91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLIL 170 (456)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 170 (456)
|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+..+ .|..||+
T Consensus 145 --Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 145 --LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDF 218 (722)
T ss_pred --ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeec
Confidence 999999999999 78888888999999999999999 78888999999999999999997 667777754 5889999
Q ss_pred cCCcccccCCCCCCccCCCCccEEecccccCcCCCChh
Q 038396 171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK 208 (456)
Q Consensus 171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 208 (456)
+.|++..+ +..+.++..|++|-|.+|.+. .-|..
T Consensus 219 ScNkis~i---Pv~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 219 SCNKISYL---PVDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred ccCceeec---chhhhhhhhheeeeeccCCCC-CChHH
Confidence 99999876 333489999999999999997 54543
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=8.9e-13 Score=127.98 Aligned_cols=198 Identities=37% Similarity=0.502 Sum_probs=121.2
Q ss_pred EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCC-CCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS-KLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
.++++.|.+... ......++.++.|++.+|+++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666666322 223344566777777777777 4555555553 7777777777776 44455677777777777777
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
++..+.+.. ...+.|+.|++++|.+. .+|... ..
T Consensus 174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~-~l~~~~-~~----------------------------------------- 207 (394)
T COG4886 174 DLSDLPKLL---SNLSNLNNLDLSGNKIS-DLPPEI-EL----------------------------------------- 207 (394)
T ss_pred hhhhhhhhh---hhhhhhhheeccCCccc-cCchhh-hh-----------------------------------------
Confidence 777664321 14567777777777776 555421 01
Q ss_pred cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333 (456)
Q Consensus 254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l 333 (456)
+..|++|.+++|.+.. .+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++. ++. +
T Consensus 208 ----------~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~ 273 (394)
T COG4886 208 ----------LSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-L 273 (394)
T ss_pred ----------hhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-c
Confidence 2235555566664333 3445666666677777777766 335566666777777777777763 333 6
Q ss_pred hcCCCCCEEeccCCcCcccCCC
Q 038396 334 VEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 334 ~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
..+.+++.|++++|.++...|.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCccCEEeccCccccccchh
Confidence 6667777777777776655443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=1.9e-12 Score=125.63 Aligned_cols=174 Identities=34% Similarity=0.460 Sum_probs=100.4
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCC---C-CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVP---P-PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF 89 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 89 (456)
.+.+..|++.+|.++ .++.. . .+|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......
T Consensus 115 ~~~l~~L~l~~n~i~-------~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~ 185 (394)
T COG4886 115 LTNLTSLDLDNNNIT-------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL 185 (394)
T ss_pred ccceeEEecCCcccc-------cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhh
Confidence 345666666666665 22221 2 25666666666666 44445666666666666666666 455444344
Q ss_pred CCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396 90 SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169 (456)
Q Consensus 90 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 169 (456)
. .|+.|++++|+++ .+|........|++|.+++|++. ..+..+..+.++..+.+.+|++. ..+..++.++++++|+
T Consensus 186 ~-~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 186 S-NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred h-hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence 4 5666666666666 44443334445666666666433 34455666666666666666665 2245556666666666
Q ss_pred ccCCcccccCCCCCCccCCCCccEEecccccCcCC
Q 038396 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK 204 (456)
Q Consensus 170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 204 (456)
+++|.++.+.. + ..+.+++.|++++|.+...
T Consensus 262 ~s~n~i~~i~~--~--~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 262 LSNNQISSISS--L--GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccccc--c--cccCccCEEeccCcccccc
Confidence 66666665533 2 4556666666666666533
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7e-13 Score=121.19 Aligned_cols=211 Identities=22% Similarity=0.249 Sum_probs=130.5
Q ss_pred CCCCccEEeccCCcCcccCC--ccccCCCCCcEEeCcCCcCCcCCC--ccccCCCCCCEEEccCCcccccCCCCCCccCC
Q 038396 113 KESRLGVIDLSHNLFQGRIP--RSLVNCSKLEFLDLGNNQISDTFP--SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF 188 (456)
Q Consensus 113 ~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 188 (456)
++.+|+.+.|.+..+. ..+ .....|++++.|||+.|-+....+ .....+|+|+.|+++.|++......... ..+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence 3455666666666655 222 245556666777777666653211 2234566777777777766543332221 345
Q ss_pred CCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccccccc
Q 038396 189 SKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILT 268 (456)
Q Consensus 189 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 268 (456)
++|+.|.++.|.++..--......+++++.|.+..|..... ...-.+++..|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------------------~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------------------KATSTKILQTLQ 249 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------------------ecchhhhhhHHh
Confidence 66777777777665222223345566666666665531000 001123356699
Q ss_pred EEEccCCCCCccC-chhhhccCCCCeEeCCCcccccc-CCcc-----ccCCCCCCeeeCCCCcccc-cCchhhhcCCCCC
Q 038396 269 GIILSSNRFDRVI-PTSIANLKGLQVLNLDNNNLQGH-IPSC-----LGNLTNLESLDLSNNRFSG-QIPQQLVEFTFLE 340 (456)
Q Consensus 269 ~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~ 340 (456)
+|||++|.+-... -.....++.|+.|+++.+.+... .|+. ...+++|++|+++.|+|.. ..-..+..+++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 9999999887643 24567899999999999998754 2332 3567899999999999952 1124466788899
Q ss_pred EEeccCCcCccc
Q 038396 341 FFDVSDNYLTGA 352 (456)
Q Consensus 341 ~L~ls~N~l~~~ 352 (456)
.|.+..|+++.+
T Consensus 330 ~l~~~~n~ln~e 341 (505)
T KOG3207|consen 330 HLRITLNYLNKE 341 (505)
T ss_pred hhhccccccccc
Confidence 999999998754
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.25 E-value=1.1e-12 Score=114.27 Aligned_cols=87 Identities=25% Similarity=0.286 Sum_probs=63.8
Q ss_pred ccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccccc-CchhhhcCCCCCEEe
Q 038396 265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ-IPQQLVEFTFLEFFD 343 (456)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~ 343 (456)
++|+.||||+|.++. ...+=..+.+.+.|.|++|.+... ..+..+-+|..||+++|+|... -...++++|.|+.+.
T Consensus 329 ~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 446677777777665 444556777888899999988633 4567777889999999988642 124578889999999
Q ss_pred ccCCcCcccCC
Q 038396 344 VSDNYLTGAIP 354 (456)
Q Consensus 344 ls~N~l~~~~p 354 (456)
+.+|++.+.+.
T Consensus 406 L~~NPl~~~vd 416 (490)
T KOG1259|consen 406 LTGNPLAGSVD 416 (490)
T ss_pred hcCCCccccch
Confidence 99999886543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=2.7e-12 Score=107.16 Aligned_cols=107 Identities=35% Similarity=0.438 Sum_probs=26.8
Q ss_pred cCCCCCeeecccCcCccccChhhh-hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccc-cCCCCC
Q 038396 64 NLNTVKNLVLSHNNLSGVLPQCLG-NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKL 141 (456)
Q Consensus 64 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L 141 (456)
+...+++|+|++|.|+ .+. .++ .+. +|+.|++++|.|+.. +.+..++.|++|++++|+++. +...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~-~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLD-KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-T-T--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccc-ccc-chhhhhc-CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 3345566666666665 222 233 233 566666666666633 235556666666666666663 22223 245666
Q ss_pred cEEeCcCCcCCcCC-CccccCCCCCCEEEccCCccc
Q 038396 142 EFLDLGNNQISDTF-PSWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 142 ~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~ 176 (456)
++|++++|+|.... -..++.+++|+.|++.+|.+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666664321 123445555666666665554
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=1e-11 Score=103.65 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh-hCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG-NFSDE 92 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~ 92 (456)
..++++|+|++|+|+....+. ..+.+|+.|++++|.|+.. . .+..++.|++|++++|.|+ .+...+. .++ +
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~----~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp-~ 89 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLG----ATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP-N 89 (175)
T ss_dssp ------------------S------TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T-T
T ss_pred ccccccccccccccccccchh----hhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCC-c
Confidence 344566666666665222111 1244556666666666522 2 3555556666666666665 3333332 344 5
Q ss_pred CcEEEccCCccceeCC-ccccCCCCccEEeccCCcCc
Q 038396 93 LSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQ 128 (456)
Q Consensus 93 L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~ 128 (456)
|++|++++|+|..... ..+..+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666665543211 22334455555555555544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=9.6e-13 Score=117.09 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=56.7
Q ss_pred cccccEEEccCCCCCcc----CchhhhccCCCCeEeCCCccccccCCcccc-----CCCCCCeeeCCCCccccc----Cc
Q 038396 264 PDILTGIILSSNRFDRV----IPTSIANLKGLQVLNLDNNNLQGHIPSCLG-----NLTNLESLDLSNNRFSGQ----IP 330 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~----~~ 330 (456)
+++|+.|||.+|.++.. +...++.+++|++|++++|.+......+|. ..|+|+.|.+.+|.|+.. +.
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 34466666666666532 334566777888888888877754433332 467888888888888642 22
Q ss_pred hhhhcCCCCCEEeccCCcCc
Q 038396 331 QQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 331 ~~l~~l~~L~~L~ls~N~l~ 350 (456)
..+...+.|+.|+|++|.+.
T Consensus 292 ~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcchhhHHhcCCccccc
Confidence 33455778888888888883
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=3.1e-12 Score=111.54 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEe
Q 038396 66 NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 145 (456)
Q Consensus 66 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 145 (456)
..|+++|||+|.|+ .+..++.-.+ .++.|++|+|.|..+. .+..+++|+.||||+|.++ .+...-..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 44666666666666 5555554444 6666666666666332 2556666666666666666 3333444555666666
Q ss_pred CcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396 146 LGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 146 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 202 (456)
|+.|.|... +.++.+-+|..|++++|+|..... .-.++++|.|+.+.+.+|++.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcc
Confidence 666666522 345556666666666666654322 122356666666666666665
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=5.2e-11 Score=121.09 Aligned_cols=109 Identities=30% Similarity=0.470 Sum_probs=92.3
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
.++.|+|++|.+++.+|..+..+. +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 367888888888888888888887 8999999999888888888888899999999999998888888888999999999
Q ss_pred cCCcCCcCCCccccCC-CCCCEEEccCCccc
Q 038396 147 GNNQISDTFPSWLGTI-PNLNVLILRSNKFY 176 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~ 176 (456)
++|.+++.+|..++.. .++..+++.+|...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 9999988888877653 46778888888644
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=2.4e-11 Score=126.17 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=108.9
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCC--CCCCCcEEEccCCc--cccccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPV--PPPETILYLVSNNS--LTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS 90 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~--~~~~L~~L~ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 90 (456)
...+...+-+|.+. .++. ..+.|++|-+..|. +.......|..++.|+.|||++|.--+.+|..++.+.
T Consensus 523 ~~~rr~s~~~~~~~-------~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-------HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hheeEEEEeccchh-------hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 45777777777765 2222 25578888888886 5545556688899999999998876668999999998
Q ss_pred CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC--cCCCccccCCCCCCEE
Q 038396 91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS--DTFPSWLGTIPNLNVL 168 (456)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L 168 (456)
+|++|+++++.+. .+|..+.++..|.+|++..+.-...+|.....+++|++|.+..-... ...-..+..+.+|+.+
T Consensus 596 -~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 596 -HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred -hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 8999999999998 78888999999999999988766566777777899999888665422 2222334455555555
Q ss_pred Ecc
Q 038396 169 ILR 171 (456)
Q Consensus 169 ~L~ 171 (456)
...
T Consensus 674 s~~ 676 (889)
T KOG4658|consen 674 SIT 676 (889)
T ss_pred eee
Confidence 543
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.15 E-value=5e-12 Score=122.96 Aligned_cols=247 Identities=24% Similarity=0.267 Sum_probs=135.6
Q ss_pred cCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396 64 NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 143 (456)
Q Consensus 64 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 143 (456)
.+..++.+++..|.+. .+-..+..+. +|+.|++.+|.|..+ ...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~-~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLK-SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhh-hhhccccccc-ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence 4455566666666666 2223344555 677777777777633 222556677777777777776432 3555566777
Q ss_pred EeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccC
Q 038396 144 LDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQ 223 (456)
Q Consensus 144 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~ 223 (456)
|++++|.|+.. ..+..++.|+.+++++|++..+... . ...+.+++.+++.+|.+. .+.. +..+..+..+++..
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLD 217 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh-cccc--hHHHHHHHHhhccc
Confidence 77777777532 3445566777777777776655431 0 144566777777777665 2221 11222222222222
Q ss_pred ccccccccCCCCCccccccccccceeEeeccCcccccccccc--cccEEEccCCCCCccCchhhhccCCCCeEeCCCccc
Q 038396 224 LRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPD--ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL 301 (456)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (456)
+.+....... ... .|+.+++++|.+... +..+..+..+..|++..|++
T Consensus 218 n~i~~~~~l~-----------------------------~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 218 NKISKLEGLN-----------------------------ELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccceeccCcc-----------------------------cchhHHHHHHhcccCccccc-cccccccccccccchhhccc
Confidence 2221100000 011 267777777777652 24566667777777777777
Q ss_pred cccCCccccCCCCCCeeeCCCCccccc---Cchh-hhcCCCCCEEeccCCcCcccCC
Q 038396 302 QGHIPSCLGNLTNLESLDLSNNRFSGQ---IPQQ-LVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L~ls~N~l~~~~p 354 (456)
... ..+...+.+..+..+.|++... .... ....+.+..+.+.+|++....+
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 633 2244555666666777766421 1111 3455677777777777765444
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.3e-12 Score=116.90 Aligned_cols=209 Identities=22% Similarity=0.232 Sum_probs=143.2
Q ss_pred cCCCCCcEEeCcCCcCCcCCC--ccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396 136 VNCSKLEFLDLGNNQISDTFP--SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213 (456)
Q Consensus 136 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 213 (456)
.++.+|+...|.++.+. ..+ .....+++++.|+|+.|-+....+..-....+++|+.|+++.|++.-......-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45678999999999886 333 355689999999999998876544333346789999999999998743333334456
Q ss_pred cccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCe
Q 038396 214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQV 293 (456)
Q Consensus 214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 293 (456)
++++.|.+++|.+.-. ........+++|+.|+|..|...........-+..|+.
T Consensus 197 ~~lK~L~l~~CGls~k--------------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK--------------------------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred hhhheEEeccCCCCHH--------------------------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 7777787777655110 01112223677999999999643333444566788999
Q ss_pred EeCCCccccccC-CccccCCCCCCeeeCCCCccccc-Cchh-----hhcCCCCCEEeccCCcCcccCCCC---CCCCCCC
Q 038396 294 LNLDNNNLQGHI-PSCLGNLTNLESLDLSNNRFSGQ-IPQQ-----LVEFTFLEFFDVSDNYLTGAIPLG---KQFATFD 363 (456)
Q Consensus 294 L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~-~~~~-----l~~l~~L~~L~ls~N~l~~~~p~~---~~~~~l~ 363 (456)
|||++|++-... -...+.++.|+.|+++.+.+... .|+. ...+++|++|+++.|++.. .+.- ..+..+.
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLK 329 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhh
Confidence 999999987332 14567899999999999998742 3333 3567999999999999963 2222 2333445
Q ss_pred CcccCCCCC
Q 038396 364 NTSFDGNSG 372 (456)
Q Consensus 364 ~~~~~~n~~ 372 (456)
.+.+.+|+.
T Consensus 330 ~l~~~~n~l 338 (505)
T KOG3207|consen 330 HLRITLNYL 338 (505)
T ss_pred hhhcccccc
Confidence 555555543
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.11 E-value=7.6e-12 Score=121.68 Aligned_cols=245 Identities=23% Similarity=0.210 Sum_probs=132.1
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+..+..+++..|.+.. +-..+..+++|+.|++.+|.|. .+...+..+. +|++|++++|.|+.+. .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhh-cchheecccccccccc--chhhccchhhh
Confidence 3444555555555552 2233555666666666666665 2222244454 5666666666666442 24445556666
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 199 (456)
++++|.++.. ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..+... ..+..+..+++..|
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccc
Confidence 6666666522 234445666666666666653332 1 35556666666666665544211 22333444455555
Q ss_pred cCcCCCChhhhhCcc--ccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCC
Q 038396 200 RFTGKLPSKSFLCLD--AMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRF 277 (456)
Q Consensus 200 ~l~~~~~~~~~~~l~--~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 277 (456)
.++ .+.. ...+. .++.+.++++...... .....+..+..|++..|.+
T Consensus 219 ~i~-~~~~--l~~~~~~~L~~l~l~~n~i~~~~----------------------------~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 219 KIS-KLEG--LNELVMLHLRELYLSGNRISRSP----------------------------EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred cce-eccC--cccchhHHHHHHhcccCcccccc----------------------------ccccccccccccchhhccc
Confidence 554 2111 11111 2445555544431110 0011134578888888888
Q ss_pred CccCchhhhccCCCCeEeCCCcccccc---CCcc-ccCCCCCCeeeCCCCcccccCc
Q 038396 278 DRVIPTSIANLKGLQVLNLDNNNLQGH---IPSC-LGNLTNLESLDLSNNRFSGQIP 330 (456)
Q Consensus 278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~-l~~l~~L~~L~Ls~N~l~~~~~ 330 (456)
... ..+...+.+..+....|++... .... ....+.++...+..|.+....+
T Consensus 268 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 268 SNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 764 3355667788888888887621 1221 4567789999999998875444
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=1.9e-11 Score=109.02 Aligned_cols=212 Identities=21% Similarity=0.238 Sum_probs=149.8
Q ss_pred CCCCCEEEccCCCCC---------------------CCCcCccCC----CC----------CCCCCcEEEccCCcccccc
Q 038396 14 MQYLNALNLSHNLLT---------------------SSNNLQGPL----PV----------PPPETILYLVSNNSLTGEI 58 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~---------------------~~~~l~~~~----~~----------~~~~L~~L~ls~n~l~~~~ 58 (456)
+..+++++||+|.+. ..+-++|.. |. .+++|+.++||+|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 788999999999987 112223322 21 1568999999999987554
Q ss_pred ch----hhhcCCCCCeeecccCcCccccCh-hhh------------hCCCCCcEEEccCCcccee----CCccccCCCCc
Q 038396 59 PS----WICNLNTVKNLVLSHNNLSGVLPQ-CLG------------NFSDELSVLDLQGNNFFGT----IPDTFIKESRL 117 (456)
Q Consensus 59 ~~----~~~~l~~L~~L~Ls~n~l~~~~~~-~~~------------~l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L 117 (456)
+. .++.+..|++|.|.+|.+. .... .++ ..++.|+++...+|++... +...|...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 43 4556889999999999875 2211 111 1224799999999998743 33457777899
Q ss_pred cEEeccCCcCcc----cCCccccCCCCCcEEeCcCCcCCcC----CCccccCCCCCCEEEccCCcccccCCCCCC---cc
Q 038396 118 GVIDLSHNLFQG----RIPRSLVNCSKLEFLDLGNNQISDT----FPSWLGTIPNLNVLILRSNKFYGIIKEPRT---DC 186 (456)
Q Consensus 118 ~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~ 186 (456)
+.+.++.|.|.. .....|..+++|+.|||.+|.++.. +...+..+++|+.|++++|.+..--...+. ..
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999998863 2334678899999999999998743 334566788999999999988643221110 13
Q ss_pred CCCCccEEecccccCcCCC---ChhhhhCccccccccccCccc
Q 038396 187 RFSKLHIIDLSNNRFTGKL---PSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 187 ~l~~L~~L~ls~n~l~~~~---~~~~~~~l~~l~~l~l~~~~~ 226 (456)
..+.|+.|.+.+|.++..- -..+....+.|..|+++.|++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4789999999999987321 122345578888999998876
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=1.2e-10 Score=80.05 Aligned_cols=59 Identities=39% Similarity=0.623 Sum_probs=29.9
Q ss_pred CCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCc
Q 038396 290 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348 (456)
Q Consensus 290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ 348 (456)
+|++|++++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554444445555555555555555554444455555555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2.8e-10 Score=78.14 Aligned_cols=59 Identities=36% Similarity=0.541 Sum_probs=32.0
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCc
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 150 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 150 (456)
+|++|++++|+++.+.+..|.++++|++|++++|+++...+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555554444555555555555555554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.5e-09 Score=113.01 Aligned_cols=129 Identities=25% Similarity=0.304 Sum_probs=100.1
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCc--CccccChh-hhhCCCCCcEEEccCCccceeCCccccCCCCc
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNN--LSGVLPQC-LGNFSDELSVLDLQGNNFFGTIPDTFIKESRL 117 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~-~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 117 (456)
....+...+.+|.+. .++.... .++|++|-+..|. +. .++.. |..++ .|++|||++|.=.+.+|..++++-+|
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~-~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLL-EISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred hhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhh-hcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhh
Confidence 456788888888776 4444333 4578888888886 55 45554 44465 89999999887666889999999999
Q ss_pred cEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCc
Q 038396 118 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNK 174 (456)
Q Consensus 118 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 174 (456)
++|++++..+. .+|..+..+++|.+|++..+.-...+|.....+++|++|.+..-.
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999998 788899999999999999887655667777778999999886654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=2.1e-10 Score=111.45 Aligned_cols=162 Identities=25% Similarity=0.258 Sum_probs=102.6
Q ss_pred ChhhhhhcCCCCCEEEccCCCCCCCCcC--------------------------ccCCCCC--CCCCcEEEccCCccccc
Q 038396 6 PKWLLDPSMQYLNALNLSHNLLTSSNNL--------------------------QGPLPVP--PPETILYLVSNNSLTGE 57 (456)
Q Consensus 6 p~~~~~~~l~~L~~L~Ls~N~l~~~~~l--------------------------~~~~~~~--~~~L~~L~ls~n~l~~~ 57 (456)
|-.+.. ++.|++|.|.++.|.....+ .|.+... -..|...+.++|.+. .
T Consensus 102 pi~ifp--F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFP--FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred Cceecc--ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 445666 89999999999998711100 1111111 235666677777777 5
Q ss_pred cchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccC
Q 038396 58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN 137 (456)
Q Consensus 58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 137 (456)
...++.-++.|+.|+|++|+++.. +.+..++ +|++|||++|.+..+.--...++ +|+.|.+++|.++.. ..+.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLP-KLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcc-cccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence 556677777788888888888743 2666776 78888888888773322223333 378888888877733 34677
Q ss_pred CCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCccc
Q 038396 138 CSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 138 l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~ 176 (456)
+.+|+.||+++|-|.+.-- .-+..+..|+.|+|.+|.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7778888888887763211 12234556777777777653
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.75 E-value=1.4e-10 Score=112.72 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=68.5
Q ss_pred cccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCc-cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396 264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 342 (456)
++.++.|+|++|+++.. ..+..+++|++|||++|.+. .+|. ...++. |+.|.+++|.++.. ..+.++.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhcc
Confidence 34567777777777664 36777777777777777777 3333 223443 77777777777632 346677777777
Q ss_pred eccCCcCcccCC--CCCCCCCCCCcccCCCCCCCCC
Q 038396 343 DVSDNYLTGAIP--LGKQFATFDNTSFDGNSGLCGR 376 (456)
Q Consensus 343 ~ls~N~l~~~~p--~~~~~~~l~~~~~~~n~~lc~~ 376 (456)
|+++|-+++.-. ..+.+..+..+.+.|||..|.+
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 777777765332 1244555666677777766643
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.48 E-value=5.7e-09 Score=80.82 Aligned_cols=86 Identities=28% Similarity=0.407 Sum_probs=57.3
Q ss_pred ccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC
Q 038396 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346 (456)
Q Consensus 267 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~ 346 (456)
|+..+|++|.+...++..-..++.++.|+|++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-+|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 566667777776654444455567777777777777 66666777777777777777776 5566666677777777777
Q ss_pred CcCcccCCC
Q 038396 347 NYLTGAIPL 355 (456)
Q Consensus 347 N~l~~~~p~ 355 (456)
|.+. .+|.
T Consensus 133 na~~-eid~ 140 (177)
T KOG4579|consen 133 NARA-EIDV 140 (177)
T ss_pred Cccc-cCcH
Confidence 7664 4443
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=7.9e-09 Score=80.06 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=54.7
Q ss_pred CcEEEccCCccccccchhhh---cCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 44 TILYLVSNNSLTGEIPSWIC---NLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 44 L~~L~ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+-.++|+.|++. .++++.. ....|+..+|++|.+. ..|..|....+.++.|++++|.|+ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 334455555554 2333322 2334444566666665 444444443334556666666665 445555556666666
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 66666655 45555555555555555555554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4e-08 Score=86.21 Aligned_cols=110 Identities=23% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCCeeecccCcCccccC-hhhhhCCCCCcEEEccCCcccee--CCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396 67 TVKNLVLSHNNLSGVLP-QCLGNFSDELSVLDLQGNNFFGT--IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 143 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~-~~~~~l~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 143 (456)
-++.|.+.++.|...-. ..|+.....++++||.+|.|+.- +...+..+|.|++|+++.|++...+..--....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34445555555542211 12333333677777777777631 2333456777777788777776433221135567777
Q ss_pred EeCcCCcCCcCCC-ccccCCCCCCEEEccCCccc
Q 038396 144 LDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 144 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~ 176 (456)
|-|.+..+.-... ..+..+|.++.|+++.|.+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 7777766653222 23456677777777777543
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6.8e-09 Score=90.91 Aligned_cols=87 Identities=24% Similarity=0.196 Sum_probs=41.7
Q ss_pred CccEEeccCCcCcc-cCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEE
Q 038396 116 RLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHII 194 (456)
Q Consensus 116 ~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 194 (456)
.|++|||++..++. .+-..+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+.--........+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555555442 11223444555555566665555555555555555666665554311110011112445566666
Q ss_pred ecccccCc
Q 038396 195 DLSNNRFT 202 (456)
Q Consensus 195 ~ls~n~l~ 202 (456)
+++.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66666554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=2.4e-08 Score=86.41 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=49.7
Q ss_pred cccccEEEccCCCCCcc----CchhhhccCCCCeEeCCCccccccCCccc----c--CCCCCCeeeCCCCcccccCchh-
Q 038396 264 PDILTGIILSSNRFDRV----IPTSIANLKGLQVLNLDNNNLQGHIPSCL----G--NLTNLESLDLSNNRFSGQIPQQ- 332 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~--~l~~L~~L~Ls~N~l~~~~~~~- 332 (456)
+.+|+.|||..|.++-. +...++.++.|+.|.+..|-++......+ . ..++|..|-..+|.+.+.+...
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~ 292 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI 292 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence 34477777777776532 23345566777777777777664333222 1 3466777777777664422111
Q ss_pred ----h--hcCCCCCEEeccCCcCc
Q 038396 333 ----L--VEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 333 ----l--~~l~~L~~L~ls~N~l~ 350 (456)
+ ..+|-|..|.+.+|.|.
T Consensus 293 ~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 293 SLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhhhhcccHHHHHHHHccCcch
Confidence 1 23555666666677665
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.9e-09 Score=91.81 Aligned_cols=181 Identities=23% Similarity=0.224 Sum_probs=108.3
Q ss_pred CCCcEEeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCcccc
Q 038396 139 SKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAM 216 (456)
Q Consensus 139 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l 216 (456)
+.|++|||++..|+.. +...+..+.+|+.|.+.++++........ .+-.+|+.|+++.+. ++..--...+.++..|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhH
Confidence 3588888888777632 22344567788888888888765543333 566788888887653 4322222446677777
Q ss_pred ccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC---ccCchhhhccCCCCe
Q 038396 217 KIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD---RVIPTSIANLKGLQV 293 (456)
Q Consensus 217 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~ 293 (456)
..|+++-+........ .....+-+.|+.|++++..-. ..+..-...+++|.+
T Consensus 263 ~~LNlsWc~l~~~~Vt-------------------------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVT-------------------------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred hhcCchHhhccchhhh-------------------------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 7777766543221110 111223455777777765321 112223356788888
Q ss_pred EeCCCcc-ccccCCccccCCCCCCeeeCCCCcccccCchh---hhcCCCCCEEeccCCc
Q 038396 294 LNLDNNN-LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ---LVEFTFLEFFDVSDNY 348 (456)
Q Consensus 294 L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~---l~~l~~L~~L~ls~N~ 348 (456)
|||+.|. ++......|..++.|++|.++.|.. .+|.. +...|+|.+||+.++-
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 8888874 3333334456778888888888864 34544 3566788888887653
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.32 E-value=2.2e-06 Score=80.69 Aligned_cols=137 Identities=19% Similarity=0.252 Sum_probs=92.2
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccC-cCccccChhhh
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN-NLSGVLPQCLG 87 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 87 (456)
+.. +.++++|++++|.|+ .+|..+.+|+.|.++++.--..+|+.+. ++|++|++++| .+. .+|.
T Consensus 48 ~~~--~~~l~~L~Is~c~L~-------sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 48 IEE--ARASGRLYIKDCDIE-------SLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred HHH--hcCCCEEEeCCCCCc-------ccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc---
Confidence 455 789999999999887 5666667899999988544346676553 58999999998 554 4443
Q ss_pred hCCCCCcEEEccCCccceeCCccccCC-CCccEEeccCCcCc--ccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396 88 NFSDELSVLDLQGNNFFGTIPDTFIKE-SRLGVIDLSHNLFQ--GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN 164 (456)
Q Consensus 88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 164 (456)
.|+.|+++.+.... +..+ ++|+.|.+.+++.. ...|..+. ++|++|++++|... ..|..+- .+
T Consensus 113 ----sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 113 ----SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred ----ccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--cc
Confidence 68888888766542 1222 35777777543311 01121121 68999999998865 4454333 58
Q ss_pred CCEEEccCCc
Q 038396 165 LNVLILRSNK 174 (456)
Q Consensus 165 L~~L~L~~n~ 174 (456)
|+.|+++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 9999988764
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=3.2e-07 Score=80.61 Aligned_cols=87 Identities=23% Similarity=0.260 Sum_probs=43.4
Q ss_pred CCCccEEeccCCcCcc--cCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCc
Q 038396 114 ESRLGVIDLSHNLFQG--RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL 191 (456)
Q Consensus 114 l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 191 (456)
.+.++.+||.+|.|+. .+...+.+++.|+.|+++.|.+...+...-....+|+.|.|.+..+.-.....+ ...+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~-l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS-LDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh-hhcchhh
Confidence 3556666666666652 222334556666666666666653322111234456666665555432211111 1345555
Q ss_pred cEEecccccC
Q 038396 192 HIIDLSNNRF 201 (456)
Q Consensus 192 ~~L~ls~n~l 201 (456)
++|.+|.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 5666665543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=8.1e-07 Score=77.17 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=60.9
Q ss_pred cccEEEccCCCCCccCc-----hhhhccCCCCeEeCCCcccccc----CCccccCCCCCCeeeCCCCcccccCchhh---
Q 038396 266 ILTGIILSSNRFDRVIP-----TSIANLKGLQVLNLDNNNLQGH----IPSCLGNLTNLESLDLSNNRFSGQIPQQL--- 333 (456)
Q Consensus 266 ~L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l--- 333 (456)
.|+++.+..|.|...-. ..+..+.+|+.|||+.|-++.. ....+...+.|++|.+..|-++..-...+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 46777777777753311 1245578999999999998733 23345567789999999998875433322
Q ss_pred ---hcCCCCCEEeccCCcCcccC
Q 038396 334 ---VEFTFLEFFDVSDNYLTGAI 353 (456)
Q Consensus 334 ---~~l~~L~~L~ls~N~l~~~~ 353 (456)
...++|..|-..+|.+.+.+
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred hhhhcCCCccccccchhhhcCce
Confidence 13578889999999887643
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.19 E-value=3.4e-06 Score=70.24 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL 96 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 96 (456)
=+.+||.+.++.... .+-....+...+||++|.+.. + +.|..++.|.+|.|.+|.|+ .+...+..+.++|..|
T Consensus 21 e~e~~LR~lkip~ie----nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE----NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTL 93 (233)
T ss_pred ccccccccccccchh----hccccccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceE
Confidence 456666666654211 122224455666666666652 1 24556666666666666666 3333344444356666
Q ss_pred EccCCccceeC-CccccCCCCccEEeccCCcCcccCC---ccccCCCCCcEEeCcC
Q 038396 97 DLQGNNFFGTI-PDTFIKESRLGVIDLSHNLFQGRIP---RSLVNCSKLEFLDLGN 148 (456)
Q Consensus 97 ~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~ 148 (456)
.+.+|.|.... -+-+..+++|++|.+-+|+++..-- ..+..+++|+.||++.
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666654210 0123445556666666665553211 1344455555555543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=3.5e-06 Score=70.10 Aligned_cols=129 Identities=22% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396 68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 147 (456)
Q Consensus 68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 147 (456)
=++++|.+.++. .+ ..++....+...+||++|++... +.|..++.|.+|.+++|+|+.+-|.--.-+++|..|.|.
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345666666654 22 12333334677788888887632 356777888888888888886555544455778888888
Q ss_pred CCcCCcCC-CccccCCCCCCEEEccCCcccccCCC-CCCccCCCCccEEeccccc
Q 038396 148 NNQISDTF-PSWLGTIPNLNVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNR 200 (456)
Q Consensus 148 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~ls~n~ 200 (456)
+|.|.... -.-+..+|+|++|.+-+|..+....- .+....+|+|+.||.+.-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88775221 12345677888888888876543211 1223567888888876543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.9e-06 Score=54.06 Aligned_cols=36 Identities=42% Similarity=0.691 Sum_probs=16.8
Q ss_pred CCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396 314 NLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 314 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~ 350 (456)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 33334455555555555555544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=1.8e-05 Score=74.62 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=42.5
Q ss_pred hhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCC-cCCcCCCccccCCCCC
Q 038396 87 GNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN-QISDTFPSWLGTIPNL 165 (456)
Q Consensus 87 ~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 165 (456)
..+. +++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+. ++|++|++++| .+. .+| .+|
T Consensus 49 ~~~~-~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 49 EEAR-ASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHhc-CCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------ccc
Confidence 3454 7888888888776 4452 2 23577777776433235555442 46777777776 443 233 235
Q ss_pred CEEEccCCcc
Q 038396 166 NVLILRSNKF 175 (456)
Q Consensus 166 ~~L~L~~n~l 175 (456)
+.|+++.+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 5566555443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5e-06 Score=52.15 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=5.4
Q ss_pred hcCCCCCeeecccCc
Q 038396 63 CNLNTVKNLVLSHNN 77 (456)
Q Consensus 63 ~~l~~L~~L~Ls~n~ 77 (456)
.+|++|++|++++|+
T Consensus 21 ~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 21 SNLPNLETLNLSNNP 35 (44)
T ss_dssp TTCTTSSEEEETSSC
T ss_pred hCCCCCCEEEecCCC
Confidence 333333333333333
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.74 E-value=0.00014 Score=58.19 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=41.3
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR 171 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 171 (456)
+|+.+.+.. .+..+...+|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+.......|..+++|+.+.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455555543 344344445555555555555543 4434444555555555555543 2222333444555555555554
Q ss_pred CCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCcccc
Q 038396 172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAM 216 (456)
Q Consensus 172 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 216 (456)
.+ +..+....+ ... +|+.+.+.. .+. .++...|.++.+|
T Consensus 90 ~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 90 SN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 43 333333333 333 555555543 233 4444555544443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=0.00021 Score=57.26 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=30.5
Q ss_pred cchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccC
Q 038396 58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN 137 (456)
Q Consensus 58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 137 (456)
...+|.++++|+.+.+.++ +...-..+|..+. .|+.+.+.+ .+.......|..+++|+.+++..+ +.......|.+
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred Chhhccccccccccccccc-ccccceeeeeccc-ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 3344444444555555443 3322223333333 355555543 333233344444455555555443 33233334444
Q ss_pred CCCCcEEeCcC
Q 038396 138 CSKLEFLDLGN 148 (456)
Q Consensus 138 l~~L~~L~Ls~ 148 (456)
+ +|+.+.+..
T Consensus 103 ~-~l~~i~~~~ 112 (129)
T PF13306_consen 103 C-NLKEINIPS 112 (129)
T ss_dssp --T--EEE-TT
T ss_pred C-CceEEEECC
Confidence 4 455544443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=1.5e-05 Score=81.52 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=89.3
Q ss_pred CCCCeeecccCcCcc-ccChhhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396 66 NTVKNLVLSHNNLSG-VLPQCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 143 (456)
Q Consensus 66 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 143 (456)
.+|++|++++...-. .=|..++.+.|.|+.|.+++=.+... ......++++|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578888888765421 22234555555888888887665421 234456778888888888888744 66788888888
Q ss_pred EeCcCCcCCc-CCCccccCCCCCCEEEccCCcccccCCCC----CCccCCCCccEEecccccCcCCC
Q 038396 144 LDLGNNQISD-TFPSWLGTIPNLNVLILRSNKFYGIIKEP----RTDCRFSKLHIIDLSNNRFTGKL 205 (456)
Q Consensus 144 L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~~L~~L~ls~n~l~~~~ 205 (456)
|.+.+=.+.. ..-..+..+++|+.||+|..+........ -....+|+|+.||.|++.+.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8887766652 11134567888888888877654332000 01134788899998887776433
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=2.6e-05 Score=79.78 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=74.1
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc-ccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG-EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
.+|++||+++...- .+.+...+-.-+|.|++|.+++-.+.. ..-....++++|..||+|+.+++.. .++..+. +|
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk-nL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLK-NL 197 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccc-cH
Confidence 46777777775542 111111222226777777777655532 2223445677777777777777633 5666666 67
Q ss_pred cEEEccCCcccee-CCccccCCCCccEEeccCCcCcccC------CccccCCCCCcEEeCcCCcCCc
Q 038396 94 SVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRI------PRSLVNCSKLEFLDLGNNQISD 153 (456)
Q Consensus 94 ~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~l~~L~~L~Ls~n~i~~ 153 (456)
++|.+.+=.+... .-..+..+++|+.||+|..+..... -+.-..+|+|+.||.|++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777666555421 1123445677777777766544211 0112235666777776666553
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.0002 Score=62.48 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=26.3
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCC--cCcccCCccccCCCCCcEEeCcCCcCC
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN--LFQGRIPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
.|+.|++.+..++.. ..|..+++|++|.++.| ++.+.++--...+++|++|+++.|+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444555544444422 22444455555555555 333333322333345555555555543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.00019 Score=62.54 Aligned_cols=105 Identities=26% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccC--cCccccChhhhhCCCCCcEEEccCCccceeC-CccccCCCCc
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHN--NLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-PDTFIKESRL 117 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L 117 (456)
+..|+.+.+.+..++.. ..|-.+++|++|.++.| .+.+.++.-...++ +|++|++++|+|...- -.....+.+|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCccccccccchhhhhcch
Confidence 56677777777766632 24666888999999999 66655555555565 8999999999887310 1224556778
Q ss_pred cEEeccCCcCcccCC---ccccCCCCCcEEeCcC
Q 038396 118 GVIDLSHNLFQGRIP---RSLVNCSKLEFLDLGN 148 (456)
Q Consensus 118 ~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~ 148 (456)
..|++.+|..+.... ..|.-+++|++||-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 899999987774221 2455677888876543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=1.5e-05 Score=69.72 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=25.3
Q ss_pred CcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396 93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
.+.|++.+|.+.++ ....+++.|+.|.|+-|+|+..- .+..|++|++|+|..|.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence 44455555554432 12234445555555555554221 2444445555555555444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=3.9e-05 Score=67.19 Aligned_cols=100 Identities=26% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccC-CccccCCCCCcE
Q 038396 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI-PRSLVNCSKLEF 143 (456)
Q Consensus 65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~ 143 (456)
+.+.+.|++.++.++++ .-..+++ .|++|.||-|+|+..-| |..+++|++|+|..|.|.... -..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp-~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMP-LLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcc-cceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45566777777777643 2233455 77888888888775433 667778888888888776321 124567777888
Q ss_pred EeCcCCcCCcCCCc-----cccCCCCCCEEE
Q 038396 144 LDLGNNQISDTFPS-----WLGTIPNLNVLI 169 (456)
Q Consensus 144 L~Ls~n~i~~~~~~-----~~~~l~~L~~L~ 169 (456)
|.|..|.-.+..+. .+.-+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877776654442 233466666664
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.93 E-value=0.00024 Score=65.88 Aligned_cols=84 Identities=23% Similarity=0.167 Sum_probs=38.7
Q ss_pred ccccEEEccCCCCCcc--CchhhhccCCCCeEeCCCcccc-ccC----CccccCCCCCCeeeCCCCccc-ccCchhhhcC
Q 038396 265 DILTGIILSSNRFDRV--IPTSIANLKGLQVLNLDNNNLQ-GHI----PSCLGNLTNLESLDLSNNRFS-GQIPQQLVEF 336 (456)
Q Consensus 265 ~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l 336 (456)
..|+.+++..+..... +...-.+++.|++|.|+++.+. +.. ...-..+..|+.+.|+++... ...-+.+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 3455555555443211 1111234556666666666432 111 111123455666666666432 2233444555
Q ss_pred CCCCEEeccCCc
Q 038396 337 TFLEFFDVSDNY 348 (456)
Q Consensus 337 ~~L~~L~ls~N~ 348 (456)
++|+.+++-+++
T Consensus 426 ~~Leri~l~~~q 437 (483)
T KOG4341|consen 426 RNLERIELIDCQ 437 (483)
T ss_pred cccceeeeechh
Confidence 666665555443
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.85 E-value=0.00039 Score=64.54 Aligned_cols=63 Identities=29% Similarity=0.226 Sum_probs=43.8
Q ss_pred ccccccEEEccCCCCCccC-----chhhhccCCCCeEeCCCcccc-ccCCccccCCCCCCeeeCCCCcc
Q 038396 263 IPDILTGIILSSNRFDRVI-----PTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRF 325 (456)
Q Consensus 263 ~~~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l 325 (456)
.++.|+.+.++++...... ...-..+..|..+.|+++... +..-+.+..+++|+.+++-.++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 3566888888877654322 122345678999999998754 44445677888999999988854
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0061 Score=31.65 Aligned_cols=12 Identities=58% Similarity=0.833 Sum_probs=5.1
Q ss_pred CcEEEccCCccc
Q 038396 93 LSVLDLQGNNFF 104 (456)
Q Consensus 93 L~~L~Ls~n~i~ 104 (456)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0043 Score=32.24 Aligned_cols=11 Identities=55% Similarity=0.745 Sum_probs=4.2
Q ss_pred CeeeCCCCccc
Q 038396 316 ESLDLSNNRFS 326 (456)
Q Consensus 316 ~~L~Ls~N~l~ 326 (456)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.24 E-value=0.005 Score=61.49 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=7.2
Q ss_pred CCCCCCEEEccCCc
Q 038396 161 TIPNLNVLILRSNK 174 (456)
Q Consensus 161 ~l~~L~~L~L~~n~ 174 (456)
.+++++.+.+..+.
T Consensus 360 ~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCG 373 (482)
T ss_pred cCCCcchhhhhhhh
Confidence 45555555555544
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.90 E-value=0.00024 Score=69.73 Aligned_cols=185 Identities=23% Similarity=0.189 Sum_probs=106.7
Q ss_pred CCEEEccCCCCCCCCc-CccCCCCCCCCCcEEEccCCccccccchh----hhcC-CCCCeeecccCcCccc----cChhh
Q 038396 17 LNALNLSHNLLTSSNN-LQGPLPVPPPETILYLVSNNSLTGEIPSW----ICNL-NTVKNLVLSHNNLSGV----LPQCL 86 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~-l~~~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~----~~~~~ 86 (456)
+..|+|.+|.+.+... ..+..-...+.|..|+++.|.+.+..-.. +... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677888887762100 00000112566777888888877432222 2222 4566777777777643 33445
Q ss_pred hhCCCCCcEEEccCCccce----eCCccc----cCCCCccEEeccCCcCccc----CCccccCCCC-CcEEeCcCCcCCc
Q 038396 87 GNFSDELSVLDLQGNNFFG----TIPDTF----IKESRLGVIDLSHNLFQGR----IPRSLVNCSK-LEFLDLGNNQISD 153 (456)
Q Consensus 87 ~~l~~~L~~L~Ls~n~i~~----~~~~~~----~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~-L~~L~Ls~n~i~~ 153 (456)
.... .++.++++.|.+.. .++..+ ....++++|.+++|.++.. ....+...+. +..|++..|.+.+
T Consensus 169 ~~~~-~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNE-HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hccc-chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5533 78888888887631 122222 3466788888888877631 1223444445 6668888888764
Q ss_pred CC----CccccCC-CCCCEEEccCCcccccCCCCC--CccCCCCccEEecccccCc
Q 038396 154 TF----PSWLGTI-PNLNVLILRSNKFYGIIKEPR--TDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 154 ~~----~~~~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~l~ 202 (456)
.. ...+..+ ..+++++++.|.+........ ....++.++++.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 31 1233344 567888888888765422211 1134567888888888876
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.76 E-value=0.0029 Score=63.20 Aligned_cols=109 Identities=28% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCcEEEccCCcccee--CCccccCCCCccEEeccCC-cCcccC----CccccCCCCCcEEeCcCCc-CCcCCCcccc-CC
Q 038396 92 ELSVLDLQGNNFFGT--IPDTFIKESRLGVIDLSHN-LFQGRI----PRSLVNCSKLEFLDLGNNQ-ISDTFPSWLG-TI 162 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~-~l 162 (456)
.|+.|.+..+.-... .-......+.|+.|+++++ ...... ......+++|+.|+++++. +++..-..++ .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 566666655532211 1123344566666666652 111011 1123345666777777666 4433333333 25
Q ss_pred CCCCEEEccCCc-ccccCCCCCCccCCCCccEEecccccC
Q 038396 163 PNLNVLILRSNK-FYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 163 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
++|++|.+.++. ++...- ......++.|++|+++++..
T Consensus 269 ~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCcc
Confidence 667777655554 222110 01123456677777776544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.71 E-value=0.00012 Score=71.77 Aligned_cols=84 Identities=25% Similarity=0.187 Sum_probs=39.7
Q ss_pred CcEEEccCCccccccc----hhhhcCCCCCeeecccCcCccccChhhh----hCCCCCcEEEccCCcccee----CCccc
Q 038396 44 TILYLVSNNSLTGEIP----SWICNLNTVKNLVLSHNNLSGVLPQCLG----NFSDELSVLDLQGNNFFGT----IPDTF 111 (456)
Q Consensus 44 L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~~L~~L~Ls~n~i~~~----~~~~~ 111 (456)
+..+.|.+|.+..... .++...+.|+.|++++|.+.+.--..+. ...+.+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666654322 2344456666666666666532111111 1112345555555555432 22233
Q ss_pred cCCCCccEEeccCCcC
Q 038396 112 IKESRLGVIDLSHNLF 127 (456)
Q Consensus 112 ~~l~~L~~L~Ls~N~l 127 (456)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3345555555555554
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.77 E-value=0.0023 Score=54.95 Aligned_cols=84 Identities=19% Similarity=0.151 Sum_probs=59.6
Q ss_pred cccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEe
Q 038396 264 PDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD 343 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 343 (456)
....+.||++.|.+.. .-..|+-++.|..|+++.|++. ..|..+.....+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3456777777777655 3345666677777777777777 66777777777777777777776 6777777778888887
Q ss_pred ccCCcCc
Q 038396 344 VSDNYLT 350 (456)
Q Consensus 344 ls~N~l~ 350 (456)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7777754
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.68 E-value=0.041 Score=26.41 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=3.3
Q ss_pred CcEEEccCCcc
Q 038396 93 LSVLDLQGNNF 103 (456)
Q Consensus 93 L~~L~Ls~n~i 103 (456)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444433
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.60 E-value=0.0022 Score=55.07 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=41.7
Q ss_pred hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396 62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 141 (456)
Q Consensus 62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 141 (456)
+......+.||++.|++. .+-..|..+. .|..||++.|++. ..|..+..+..+..+++..|..+ ..|.++...+.+
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 333445555555555554 3333344444 4555555555554 44444544444555555555444 444455555555
Q ss_pred cEEeCcCCc
Q 038396 142 EFLDLGNNQ 150 (456)
Q Consensus 142 ~~L~Ls~n~ 150 (456)
+++++-.|.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 555554444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.04 E-value=0.14 Score=27.66 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=6.2
Q ss_pred CCCeeecccCcCc
Q 038396 67 TVKNLVLSHNNLS 79 (456)
Q Consensus 67 ~L~~L~Ls~n~l~ 79 (456)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.04 E-value=0.14 Score=27.66 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=6.2
Q ss_pred CCCeeecccCcCc
Q 038396 67 TVKNLVLSHNNLS 79 (456)
Q Consensus 67 ~L~~L~Ls~n~l~ 79 (456)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.52 E-value=0.17 Score=27.32 Aligned_cols=14 Identities=64% Similarity=0.873 Sum_probs=7.2
Q ss_pred CCCCeeeCCCCccc
Q 038396 313 TNLESLDLSNNRFS 326 (456)
Q Consensus 313 ~~L~~L~Ls~N~l~ 326 (456)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.52 E-value=0.17 Score=27.32 Aligned_cols=14 Identities=64% Similarity=0.873 Sum_probs=7.2
Q ss_pred CCCCeeeCCCCccc
Q 038396 313 TNLESLDLSNNRFS 326 (456)
Q Consensus 313 ~~L~~L~Ls~N~l~ 326 (456)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=0.052 Score=45.87 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=60.2
Q ss_pred cccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc-CCcccc-CCCCCCeeeCCCC-cccccCchhhhcCCCCCEE
Q 038396 266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH-IPSCLG-NLTNLESLDLSNN-RFSGQIPQQLVEFTFLEFF 342 (456)
Q Consensus 266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 342 (456)
.++.+|-++..|..+--+.+.+++.++.|.+.+++--+. --+.++ -.++|+.|+|++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 388899999988877777788888889998888853211 001111 3478999999988 7876666677888888888
Q ss_pred eccCCc
Q 038396 343 DVSDNY 348 (456)
Q Consensus 343 ~ls~N~ 348 (456)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 876543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.71 E-value=0.094 Score=27.71 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=4.8
Q ss_pred CCCeeecccCcCc
Q 038396 67 TVKNLVLSHNNLS 79 (456)
Q Consensus 67 ~L~~L~Ls~n~l~ 79 (456)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 84
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.07 E-value=0.7 Score=27.23 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=4.2
Q ss_pred hhhhhhhHHHH
Q 038396 414 GYAGGLVTGLV 424 (456)
Q Consensus 414 ~~~~~~~~~~~ 424 (456)
++.+++++|++
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 33344333333
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.81 E-value=0.52 Score=25.48 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=11.9
Q ss_pred CCCCCEEEccCCCCCC
Q 038396 14 MQYLNALNLSHNLLTS 29 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~ 29 (456)
+.+|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3578888888888863
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=86.79 E-value=4 Score=39.46 Aligned_cols=138 Identities=15% Similarity=-0.006 Sum_probs=71.5
Q ss_pred CCCeeecccCcCccccChhhhhCC--CCCcEEEccCCcccee---CCccccCCCCccEEeccCCcCcc----cCC----c
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFS--DELSVLDLQGNNFFGT---IPDTFIKESRLGVIDLSHNLFQG----RIP----R 133 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~--~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~N~l~~----~~~----~ 133 (456)
.+++++++.|...+.+|..+..+. ..++.++.+...+... .+-.++.-++++..+++.|..+. ..+ .
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 577888888888777776443221 2466777776665421 22334445677777777775542 111 2
Q ss_pred cccCCCCCcEEeCcCCcCCcCCCccc--c----CCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396 134 SLVNCSKLEFLDLGNNQISDTFPSWL--G----TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 134 ~l~~l~~L~~L~Ls~n~i~~~~~~~~--~----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 206 (456)
.|..-.++ +|++..+.....-+..+ + .-+.=-+++++.|...+.....-. ..-..+++|+...|.+.|+..
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac-i~g~R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC-IFGQRVQVLLQRDNNLDGEGG 371 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc-ccceeeeEeeccccccccccc
Confidence 33444556 66666655443222111 0 001112345555444332111110 112358889999998876654
No 87
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=85.77 E-value=0.83 Score=26.94 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHhhhhhhHhHhhhhhHH
Q 038396 416 AGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
.++.+++++++++++.+...+|..+.+|.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 456667777777776666666666555544
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=0.18 Score=42.75 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCccccc
Q 038396 139 SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAMK 217 (456)
Q Consensus 139 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~ 217 (456)
..++.+|-++..|..+--+.+..++.++.|.+.++.--+.........-.++|+.|++++|. |+ +-....+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 34566666666665444444555556666665555422110000011234677777777664 33 44444555666666
Q ss_pred cccccCccc
Q 038396 218 IVNTSQLRY 226 (456)
Q Consensus 218 ~l~l~~~~~ 226 (456)
.+.+...+.
T Consensus 180 ~L~l~~l~~ 188 (221)
T KOG3864|consen 180 RLHLYDLPY 188 (221)
T ss_pred HHHhcCchh
Confidence 666655444
No 89
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=84.59 E-value=1.4 Score=37.47 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=16.6
Q ss_pred cceeeeehhhhhhhHHHHHHHHHhhhh
Q 038396 407 DWKIILIGYAGGLVTGLVLGFNFSSII 433 (456)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
.+..|++|+++|++++++|.+++.++|
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHH
Confidence 456677777777766555555554443
No 90
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.16 E-value=1.2 Score=34.75 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=5.6
Q ss_pred ehhhhhhhHHHHH
Q 038396 413 IGYAGGLVTGLVL 425 (456)
Q Consensus 413 ~~~~~~~~~~~~~ 425 (456)
+++++|+++|++.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3444444444433
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.74 E-value=5.3 Score=38.67 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=39.4
Q ss_pred ccEEEccCCCCCccCch--hhhccCCCCeEeCCCccccc-cCCcccc--------CCCCCCeeeCCCCcccccCch---h
Q 038396 267 LTGIILSSNRFDRVIPT--SIANLKGLQVLNLDNNNLQG-HIPSCLG--------NLTNLESLDLSNNRFSGQIPQ---Q 332 (456)
Q Consensus 267 L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~-~~~~~l~--------~l~~L~~L~Ls~N~l~~~~~~---~ 332 (456)
+++|....|.+.+..-. ....-+..+.+++.+-.-.. ..+.... .-.-+..+.++.|.+...... .
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 67777777776654332 22333455556555433210 0000000 112355666666666532221 2
Q ss_pred hhcCCCCCEEeccCCcCc
Q 038396 333 LVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 333 l~~l~~L~~L~ls~N~l~ 350 (456)
+..-+.+..|++++|...
T Consensus 436 l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hccCcccccccccCCCcc
Confidence 233456667777776543
No 92
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.72 E-value=2 Score=35.30 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=34.6
Q ss_pred cceeeeehhhhhhhHHHHHHHHHhhhhhhHhHhhhhhHHHhhhcccc
Q 038396 407 DWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKGI 453 (456)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (456)
.|..+..++.+|.++..+++.+++|...+|....++.|+++++.+++
T Consensus 134 lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~~~~~~~ 180 (184)
T COG3216 134 LWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRRSLAERA 180 (184)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46777788888887777777777787778888887777666655543
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.15 E-value=1.2 Score=24.02 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=6.8
Q ss_pred CCCeeeCCCCccc
Q 038396 314 NLESLDLSNNRFS 326 (456)
Q Consensus 314 ~L~~L~Ls~N~l~ 326 (456)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4455555555554
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=79.95 E-value=0.86 Score=53.32 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=25.4
Q ss_pred eCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC
Q 038396 319 DLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356 (456)
Q Consensus 319 ~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 356 (456)
||++|+|+...+..|..+++|+.|+|++|++.|.|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 46677776555566666777777777777777766643
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.53 E-value=1.6 Score=23.97 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=8.8
Q ss_pred CCCCEEEccCCCCC
Q 038396 15 QYLNALNLSHNLLT 28 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~ 28 (456)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 96
>PF15050 SCIMP: SCIMP protein
Probab=78.86 E-value=1.5 Score=33.23 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred eeehhhhhhhHHHHHHHHHhhhhhhHhHhhhhhHHH
Q 038396 411 ILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQI 446 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
|+++++ .+++++++++++++.. +|.+|.-+|..+
T Consensus 10 iiLAVa-II~vS~~lglIlyCvc-R~~lRqGkkwei 43 (133)
T PF15050_consen 10 IILAVA-IILVSVVLGLILYCVC-RWQLRQGKKWEI 43 (133)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH-HHHHHcccccee
Confidence 334433 3445566666665544 677766665544
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.99 E-value=1.4 Score=43.31 Aligned_cols=63 Identities=32% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCCCcEEEccCCcccccc--chhhhcCCCCCeeecccC--cCccc-cChhhhhCCCCCcEEEccCCccce
Q 038396 41 PPETILYLVSNNSLTGEI--PSWICNLNTVKNLVLSHN--NLSGV-LPQCLGNFSDELSVLDLQGNNFFG 105 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n--~l~~~-~~~~~~~l~~~L~~L~Ls~n~i~~ 105 (456)
.+.+..++|++|++.... ...-...|+|+.|+|++| .+... --..++.+ .|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l--~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL--PLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC--CHHHeeecCCcccc
Confidence 455566666666654221 111123456667777776 33211 00112223 36777777776653
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=74.54 E-value=2.7 Score=32.75 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=21.6
Q ss_pred eeehhhhhhhHHHHHHHHHhhhhhhHhHhhhhhHH
Q 038396 411 ILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQ 445 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
+..+...++++|++.+++..++...|++++.+|+.
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34566777788888888777766666666555553
No 99
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=73.77 E-value=5.2 Score=27.24 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=7.2
Q ss_pred eehhhhhhhHHHHHHH
Q 038396 412 LIGYAGGLVTGLVLGF 427 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~ 427 (456)
++|++++++++++..+
T Consensus 35 aIGvi~gi~~~~lt~l 50 (68)
T PF04971_consen 35 AIGVIGGIFFGLLTYL 50 (68)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455555444444333
No 100
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=73.05 E-value=2.9 Score=29.70 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q 038396 420 VTGLVLGFNF 429 (456)
Q Consensus 420 ~~~~~~~~~~ 429 (456)
++.+++++++
T Consensus 13 iv~~iiaIvv 22 (81)
T PF00558_consen 13 IVALIIAIVV 22 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 101
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=71.99 E-value=6.8 Score=23.45 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=4.2
Q ss_pred hhhhHhHhh
Q 038396 432 IIVGWFLDK 440 (456)
Q Consensus 432 ~~~~~~~~~ 440 (456)
..++|.-|+
T Consensus 29 iYRKw~aRk 37 (43)
T PF08114_consen 29 IYRKWQARK 37 (43)
T ss_pred HHHHHHHHH
Confidence 344555444
No 102
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=71.97 E-value=1.2 Score=29.85 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred ehhhhhhhHHHHHHHHH
Q 038396 413 IGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (456)
.|+++|.++++++++++
T Consensus 12 aavIaG~Vvgll~ailL 28 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILL 28 (64)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445544444444444
No 103
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.62 E-value=5.9 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=8.4
Q ss_pred ehhhhhhhHHHHHHHHH
Q 038396 413 IGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (456)
+.+++++++|++++.++
T Consensus 22 l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 22 LLILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555544
No 104
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.62 E-value=2.3 Score=41.92 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=28.0
Q ss_pred ccccEEEccCCCCCccC--chhhhccCCCCeEeCCCc--cccccCCcccc--CCCCCCeeeCCCCccc
Q 038396 265 DILTGIILSSNRFDRVI--PTSIANLKGLQVLNLDNN--NLQGHIPSCLG--NLTNLESLDLSNNRFS 326 (456)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~--~l~~L~~L~Ls~N~l~ 326 (456)
+.+..+.|++|++.... ...-...|+|+.|+|++| .+... .++. +...|++|-+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 34556666666665431 111233456666666666 33211 1111 1224556666666654
No 105
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=69.33 E-value=7.6 Score=30.64 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHHHhhhhhhHhHhhhhhHHHhhhc
Q 038396 416 AGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRK 450 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (456)
.+.++++++|.+++++.+..||-++.+|....-.+
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkKaaAAi~e 65 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEE 65 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhh
Confidence 34455666666666667777777776666544433
No 106
>PF15179 Myc_target_1: Myc target protein 1
Probab=68.70 E-value=3.3 Score=34.16 Aligned_cols=36 Identities=19% Similarity=0.451 Sum_probs=21.3
Q ss_pred CcccceeeeehhhhhhhHHHHHHHHHhhhhhhHhHh
Q 038396 404 GAFDWKIILIGYAGGLVTGLVLGFNFSSIIVGWFLD 439 (456)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
..+.|.-++++.-+.+++|++++.+++++..+-.+|
T Consensus 14 ~~f~~~~lIlaF~vSm~iGLviG~li~~LltwlSRR 49 (197)
T PF15179_consen 14 ENFDWEDLILAFCVSMAIGLVIGALIWALLTWLSRR 49 (197)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566676677777777777665554333333
No 107
>PRK09459 pspG phage shock protein G; Reviewed
Probab=67.35 E-value=4.8 Score=27.86 Aligned_cols=21 Identities=10% Similarity=0.504 Sum_probs=13.9
Q ss_pred hhhhhHhHhhhhhHHHhhhcc
Q 038396 431 SIIVGWFLDKLGMQQIATRKK 451 (456)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~ 451 (456)
.....|+.|.+++++.+++++
T Consensus 54 ~~v~vW~~r~~~~~~~~~y~~ 74 (76)
T PRK09459 54 AVVVVWVIRAIKAPKVPRYQR 74 (76)
T ss_pred HHHHHHHHHHhhccccccccc
Confidence 355678888877776655543
No 108
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=67.05 E-value=2.7 Score=35.84 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=2.9
Q ss_pred hhhhhHHH
Q 038396 416 AGGLVTGL 423 (456)
Q Consensus 416 ~~~~~~~~ 423 (456)
++|+++|+
T Consensus 40 ~iaiVAG~ 47 (221)
T PF08374_consen 40 MIAIVAGI 47 (221)
T ss_pred eeeeecch
Confidence 33333333
No 109
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=63.69 E-value=2 Score=28.84 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=0.0
Q ss_pred eeehhhhhhhHHHHHHHHH
Q 038396 411 ILIGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~ 429 (456)
++.|.++|+++.+++++++
T Consensus 14 vIaG~Vvgll~ailLIlf~ 32 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLILFL 32 (64)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 110
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=63.09 E-value=2.1 Score=34.40 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=11.0
Q ss_pred eeeehhhhhhhHHHHHHHHH
Q 038396 410 IILIGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (456)
-+++|+++|+.+.+++++++
T Consensus 49 nIVIGvVVGVGg~ill~il~ 68 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILA 68 (154)
T ss_pred cEEEEEEecccHHHHHHHHH
Confidence 35567666665555544433
No 111
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=62.69 E-value=7.6 Score=32.89 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=5.0
Q ss_pred EEeccCCcCcc
Q 038396 341 FFDVSDNYLTG 351 (456)
Q Consensus 341 ~L~ls~N~l~~ 351 (456)
+.|..++.-.+
T Consensus 8 y~d~~g~~~~~ 18 (179)
T PF13908_consen 8 YYDVMGQWDPG 18 (179)
T ss_pred eecCCCCCccC
Confidence 34455544443
No 112
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=62.10 E-value=18 Score=32.62 Aligned_cols=19 Identities=5% Similarity=0.066 Sum_probs=8.8
Q ss_pred HhHhhhhhHHHhhhccccc
Q 038396 436 WFLDKLGMQQIATRKKGIR 454 (456)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~ 454 (456)
|..+..||++++...++++
T Consensus 235 ~~vr~krk~k~~eMEr~A~ 253 (278)
T PF06697_consen 235 MLVRYKRKKKIEEMERRAE 253 (278)
T ss_pred hhhhhhHHHHHHHHHHhhc
Confidence 3444444445555444443
No 113
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=59.98 E-value=12 Score=23.46 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=5.1
Q ss_pred eeeehhhhhhh
Q 038396 410 IILIGYAGGLV 420 (456)
Q Consensus 410 ~~~~~~~~~~~ 420 (456)
++|.+++++++
T Consensus 6 yVW~sYg~t~~ 16 (46)
T PF04995_consen 6 YVWSSYGVTAL 16 (46)
T ss_pred HHHHHHHHHHH
Confidence 34455444443
No 114
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=59.15 E-value=14 Score=30.30 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=8.9
Q ss_pred HhhhhhhHhHhhhhhHHHhh
Q 038396 429 FSSIIVGWFLDKLGMQQIAT 448 (456)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~ 448 (456)
+.|+...+..++.+++++|+
T Consensus 134 i~Y~l~~~~~~~~r~~r~~~ 153 (154)
T PF09835_consen 134 ISYFLVYFLVRKYRKRRRKR 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444443
No 115
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=58.98 E-value=14 Score=22.65 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=12.0
Q ss_pred hHHHHHHHHHhhhhhhHhHhhhhh
Q 038396 420 VTGLVLGFNFSSIIVGWFLDKLGM 443 (456)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
++++++.+.+..+..+++.+++++
T Consensus 16 l~vI~~~igm~~~~~~~F~~k~~~ 39 (42)
T PF11346_consen 16 LIVIVFTIGMGVFFIRYFIRKMKE 39 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333444444444555666666554
No 116
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.59 E-value=19 Score=24.63 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=4.7
Q ss_pred eehhhhhhhHHH
Q 038396 412 LIGYAGGLVTGL 423 (456)
Q Consensus 412 ~~~~~~~~~~~~ 423 (456)
.++.++|++++.
T Consensus 25 l~~f~~G~llg~ 36 (68)
T PF06305_consen 25 LIAFLLGALLGW 36 (68)
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 117
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=56.48 E-value=8.7 Score=31.71 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=4.7
Q ss_pred HHHHhhhhhhHh
Q 038396 426 GFNFSSIIVGWF 437 (456)
Q Consensus 426 ~~~~~~~~~~~~ 437 (456)
+++++||..++|
T Consensus 106 ~l~i~yfvir~~ 117 (163)
T PF06679_consen 106 ALAILYFVIRTF 117 (163)
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
No 118
>PRK01844 hypothetical protein; Provisional
Probab=55.12 E-value=16 Score=25.33 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=7.1
Q ss_pred hhhhHhHhhhhhH
Q 038396 432 IIVGWFLDKLGMQ 444 (456)
Q Consensus 432 ~~~~~~~~~~~~~ 444 (456)
+.++++.+.+++.
T Consensus 24 ~ark~~~k~lk~N 36 (72)
T PRK01844 24 IARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHC
Confidence 4555665555544
No 119
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=55.04 E-value=13 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=15.5
Q ss_pred eeehhhhhhhHHHHHHHHHhhhhhhHhHh
Q 038396 411 ILIGYAGGLVTGLVLGFNFSSIIVGWFLD 439 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
+..++.+|++++=+++.++++....|+-+
T Consensus 31 ls~g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 31 LSPGLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566777766655444444444444444
No 120
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=54.35 E-value=10 Score=28.02 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=7.7
Q ss_pred hhhhHhHhhhhhHHHh
Q 038396 432 IIVGWFLDKLGMQQIA 447 (456)
Q Consensus 432 ~~~~~~~~~~~~~~~~ 447 (456)
....||......+.+|
T Consensus 39 KC~~~~k~~~SY~H~r 54 (102)
T PF15176_consen 39 KCPVWYKYLASYRHHR 54 (102)
T ss_pred HhHHHHHHHhcccccc
Confidence 4445555555444443
No 121
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=53.37 E-value=13 Score=26.64 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=13.4
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhHhHhhhhhH
Q 038396 414 GYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQ 444 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
++-..+++++.+.+++ .|..+|..|+..++
T Consensus 34 gm~~lvI~~iFil~Vi-lwfvCC~kRkrsRr 63 (94)
T PF05393_consen 34 GMWFLVICGIFILLVI-LWFVCCKKRKRSRR 63 (94)
T ss_pred chhHHHHHHHHHHHHH-HHHHHHHHhhhccC
Confidence 3333444444333333 34556665554444
No 122
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=53.08 E-value=18 Score=33.30 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.8
Q ss_pred hHhhhhhHHHh
Q 038396 437 FLDKLGMQQIA 447 (456)
Q Consensus 437 ~~~~~~~~~~~ 447 (456)
|+|+.+++++-
T Consensus 281 YRRKKKmkKKl 291 (299)
T PF02009_consen 281 YRRKKKMKKKL 291 (299)
T ss_pred HHHHhhhhHHH
Confidence 44444444433
No 123
>PRK00523 hypothetical protein; Provisional
Probab=52.49 E-value=14 Score=25.59 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=6.6
Q ss_pred hhhhhHhHhhhhh
Q 038396 431 SIIVGWFLDKLGM 443 (456)
Q Consensus 431 ~~~~~~~~~~~~~ 443 (456)
++.++++.+.+++
T Consensus 24 fiark~~~k~l~~ 36 (72)
T PRK00523 24 FVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555553
No 124
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.75 E-value=11 Score=20.14 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=7.8
Q ss_pred CCCCCEEEccCCC
Q 038396 14 MQYLNALNLSHNL 26 (456)
Q Consensus 14 l~~L~~L~Ls~N~ 26 (456)
+++|++|+|+++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3556666666664
No 125
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=50.64 E-value=13 Score=30.18 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=19.7
Q ss_pred ehhhhhhhHHHHHHHHHhhhhhhH----hHhhhhhHHHhhh
Q 038396 413 IGYAGGLVTGLVLGFNFSSIIVGW----FLDKLGMQQIATR 449 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 449 (456)
+++++|+++..+++++++.=++|. |.++++++++|..
T Consensus 9 ~~~~ag~a~~~flgYciYFD~KRR~dPdFRkkLr~rr~k~~ 49 (148)
T TIGR00985 9 VVIAAGIAAAAFLGYAIYFDYKRRNDPDFRKKLRRRRKKQA 49 (148)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH
Confidence 344555555566666665433333 5566655554333
No 126
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=50.47 E-value=17 Score=24.85 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHHhhhhhhHhHhhhhhHHHh
Q 038396 416 AGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIA 447 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (456)
++|++.+++++++. +..-||+++.+.++..
T Consensus 35 aIGvi~gi~~~~lt--~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 35 AIGVIGGIFFGLLT--YLTNLYFKIKEDRRKA 64 (68)
T ss_pred hHHHHHHHHHHHHH--HHhHhhhhhhHhhhHh
Confidence 45566656655555 6667777765544443
No 127
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=50.22 E-value=66 Score=24.57 Aligned_cols=7 Identities=0% Similarity=-0.064 Sum_probs=2.7
Q ss_pred hhhhHhH
Q 038396 432 IIVGWFL 438 (456)
Q Consensus 432 ~~~~~~~ 438 (456)
..+|+++
T Consensus 106 LLrR~cR 112 (126)
T PF03229_consen 106 LLRRCCR 112 (126)
T ss_pred HHHHHHH
Confidence 3333333
No 128
>PF14851 FAM176: FAM176 family
Probab=49.04 E-value=7.7 Score=31.58 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=14.0
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhHh
Q 038396 414 GYAGGLVTGLVLGFNFSSIIVGWF 437 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~ 437 (456)
-.+.|+-+|+++.+++++.+..|.
T Consensus 25 YFv~gVC~GLlLtLcllV~risc~ 48 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLLVIRISCR 48 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhheee
Confidence 334555566666666666666653
No 129
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.61 E-value=21 Score=32.93 Aligned_cols=22 Identities=5% Similarity=-0.165 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhhHhHhhhhhHH
Q 038396 424 VLGFNFSSIIVGWFLDKLGMQQ 445 (456)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
|++++.+++|.|+-.++-+|.+
T Consensus 271 IMvIIYLILRYRRKKKmkKKlQ 292 (299)
T PF02009_consen 271 IMVIIYLILRYRRKKKMKKKLQ 292 (299)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 3333333344555444444433
No 130
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=45.23 E-value=76 Score=24.23 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHhhhhhhHhHhhhhhHHHhhhc
Q 038396 418 GLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRK 450 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (456)
+.|+|-++.+++...-.....++.++++.|+|+
T Consensus 87 p~VIGGLcaL~LaamGA~~LLrR~cRr~arrR~ 119 (126)
T PF03229_consen 87 PLVIGGLCALTLAAMGAGALLRRCCRRAARRRQ 119 (126)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333443444444333444455555555444444
No 131
>PTZ00370 STEVOR; Provisional
Probab=45.05 E-value=27 Score=31.50 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=8.1
Q ss_pred hhhHhHhhhhhHHHhh
Q 038396 433 IVGWFLDKLGMQQIAT 448 (456)
Q Consensus 433 ~~~~~~~~~~~~~~~~ 448 (456)
...|..|+.++.|+..
T Consensus 274 lYiwlyrrRK~swkhe 289 (296)
T PTZ00370 274 LYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHhhcchhHHH
Confidence 4456555555555433
No 132
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.94 E-value=17 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=9.3
Q ss_pred eeehhhhhhhHHHHHHHHHhh
Q 038396 411 ILIGYAGGLVTGLVLGFNFSS 431 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~ 431 (456)
|++.+++++++.++++-.++|
T Consensus 15 IVLlvV~g~ll~flvGnyvlY 35 (69)
T PF04689_consen 15 IVLLVVAGLLLVFLVGNYVLY 35 (69)
T ss_pred EEeehHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 133
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=42.94 E-value=12 Score=26.65 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=12.3
Q ss_pred hhhhHhHhhhhhHHHhhh
Q 038396 432 IIVGWFLDKLGMQQIATR 449 (456)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (456)
.-+-|+.+.+.++.+|.+
T Consensus 70 aDRYwWvkh~DkRcrr~~ 87 (89)
T PF10762_consen 70 ADRYWWVKHFDKRCRRNQ 87 (89)
T ss_pred hhhHHHHHhhhHhhcccc
Confidence 456678888877766654
No 134
>PRK10692 hypothetical protein; Provisional
Probab=42.87 E-value=11 Score=26.98 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=12.5
Q ss_pred hhhhHhHhhhhhHHHhhh
Q 038396 432 IIVGWFLDKLGMQQIATR 449 (456)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (456)
.-+-|+.+.+.++.+|..
T Consensus 70 aDRYwwvkh~d~rcrr~~ 87 (92)
T PRK10692 70 ADRYWWVRHYDKRCRRSD 87 (92)
T ss_pred hhhHHHHhhccHhhcccc
Confidence 456788888877776643
No 135
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=42.84 E-value=12 Score=26.40 Aligned_cols=7 Identities=14% Similarity=0.786 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 038396 418 GLVTGLV 424 (456)
Q Consensus 418 ~~~~~~~ 424 (456)
++++|++
T Consensus 5 ~~~~g~~ 11 (75)
T PF14575_consen 5 SIIVGVL 11 (75)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3334433
No 136
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=42.61 E-value=33 Score=23.05 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=14.7
Q ss_pred eeeeehhhhhhhHHHHHHHHHhhhhhhHhHhhhhhH
Q 038396 409 KIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQ 444 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
.++|.++++.++..+ +.++..+..++-+.+-+.++
T Consensus 17 fyVWlA~~~tll~l~-~l~v~sv~qrr~iL~~v~r~ 51 (67)
T COG3114 17 FYVWLAVGMTLLPLA-VLVVHSVLQRRAILRGVARQ 51 (67)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445566555544322 22222233334444444443
No 137
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=42.25 E-value=42 Score=22.74 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=4.8
Q ss_pred hhhhHHHHHHH
Q 038396 417 GGLVTGLVLGF 427 (456)
Q Consensus 417 ~~~~~~~~~~~ 427 (456)
+++++|+++++
T Consensus 5 lali~G~~~Gf 15 (64)
T PF03672_consen 5 LALIVGAVIGF 15 (64)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 138
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.98 E-value=27 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=13.6
Q ss_pred eeehhhhhhhHHHHHHHHHhh
Q 038396 411 ILIGYAGGLVTGLVLGFNFSS 431 (456)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~ 431 (456)
.|...++|+|+|+++++++..
T Consensus 7 ~W~~a~igLvvGi~IG~li~R 27 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777776633
No 139
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=40.73 E-value=3.7 Score=33.07 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=15.6
Q ss_pred ceeeeehhhhhhhHHHHHHHHHhh
Q 038396 408 WKIILIGYAGGLVTGLVLGFNFSS 431 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
..-+++|+++.+++++++++++++
T Consensus 51 VIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEEEecccHHHHHHHHHhheeEE
Confidence 455777877777776666665543
No 140
>PHA03265 envelope glycoprotein D; Provisional
Probab=40.31 E-value=32 Score=31.92 Aligned_cols=11 Identities=18% Similarity=-0.242 Sum_probs=5.1
Q ss_pred hhHhHhhhhhH
Q 038396 434 VGWFLDKLGMQ 444 (456)
Q Consensus 434 ~~~~~~~~~~~ 444 (456)
.+|.+++-.++
T Consensus 370 ~~~rr~k~~~k 380 (402)
T PHA03265 370 VCLRRKKELKK 380 (402)
T ss_pred HHhhhhhhhhh
Confidence 34555544443
No 141
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=40.15 E-value=18 Score=35.11 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=9.3
Q ss_pred eeeehhhhhhhHHHHHHHHH
Q 038396 410 IILIGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (456)
+..|++++++|+|.+|+|+.
T Consensus 369 IaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred eeeeeehhHHHHHHHHHHHh
Confidence 33444444444444555444
No 142
>PRK11677 hypothetical protein; Provisional
Probab=39.29 E-value=21 Score=28.41 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=14.4
Q ss_pred eehhhhhhhHHHHHHHHHhhhh
Q 038396 412 LIGYAGGLVTGLVLGFNFSSII 433 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (456)
|+..++++++|+++++++..+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3455677777777777776653
No 143
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=39.13 E-value=52 Score=28.59 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHhhhhhhHhHhhhhh
Q 038396 416 AGGLVTGLVLGFNFSSIIVGWFLDKLGM 443 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
.+-++++++++++++|+..+|+.++.+-
T Consensus 68 l~qmi~aL~~VI~Liy~l~rwL~rR~~~ 95 (219)
T PRK13415 68 FVKLIGATLFVIFLIYALVKWLNKRNRL 95 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444455555555556788876654
No 144
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=38.86 E-value=30 Score=32.45 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhhHhHhhhhhH
Q 038396 423 LVLGFNFSSIIVGWFLDKLGMQ 444 (456)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
+|++++++|+. -+|+|+.+.+
T Consensus 322 IVLIMvIIYLI-LRYRRKKKMk 342 (353)
T TIGR01477 322 IVLIMVIIYLI-LRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHH-HHhhhcchhH
Confidence 33333333333 3344443333
No 145
>PTZ00046 rifin; Provisional
Probab=38.57 E-value=30 Score=32.56 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=8.2
Q ss_pred HHHHHHhhhhhhHhHhhhhhHH
Q 038396 424 VLGFNFSSIIVGWFLDKLGMQQ 445 (456)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
|++++++|+. -+|+|+.+.++
T Consensus 328 VLIMvIIYLI-LRYRRKKKMkK 348 (358)
T PTZ00046 328 VLIMVIIYLI-LRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHH-HHhhhcchhHH
Confidence 3333333333 33444444333
No 146
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=36.55 E-value=52 Score=24.49 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHhhhhhhHhH
Q 038396 417 GGLVTGLVLGFNFSSIIVGWFL 438 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
+|+++++++..+++++..+|.+
T Consensus 21 VGVv~~al~~SlLIalaaKC~~ 42 (102)
T PF15176_consen 21 VGVVVTALVTSLLIALAAKCPV 42 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444334444333
No 147
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=35.55 E-value=59 Score=22.50 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=4.5
Q ss_pred hhhhHhHhhh
Q 038396 432 IIVGWFLDKL 441 (456)
Q Consensus 432 ~~~~~~~~~~ 441 (456)
....|+..+.
T Consensus 38 a~lSwkLaK~ 47 (74)
T PF15086_consen 38 AVLSWKLAKA 47 (74)
T ss_pred HHHHHHHHHH
Confidence 3445544443
No 148
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=35.41 E-value=20 Score=26.67 Aligned_cols=13 Identities=31% Similarity=0.288 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHhh
Q 038396 419 LVTGLVLGFNFSS 431 (456)
Q Consensus 419 ~~~~~~~~~~~~~ 431 (456)
+++++++++++++
T Consensus 77 ~~v~~lv~~l~w~ 89 (96)
T PTZ00382 77 AVVGGLVGFLCWW 89 (96)
T ss_pred hHHHHHHHHHhhe
Confidence 3344444444433
No 149
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=35.17 E-value=37 Score=24.08 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=2.2
Q ss_pred hhhhHh
Q 038396 432 IIVGWF 437 (456)
Q Consensus 432 ~~~~~~ 437 (456)
....++
T Consensus 27 ~l~~~~ 32 (79)
T PF04277_consen 27 SLMSKL 32 (79)
T ss_pred HHHHHH
Confidence 333333
No 150
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.99 E-value=40 Score=30.44 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=6.1
Q ss_pred hhhHhHhhhhhHH
Q 038396 433 IVGWFLDKLGMQQ 445 (456)
Q Consensus 433 ~~~~~~~~~~~~~ 445 (456)
...|..|+.++.|
T Consensus 278 LYiWlyrrRK~sw 290 (295)
T TIGR01478 278 LYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHhhcccc
Confidence 3455555544444
No 151
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.85 E-value=15 Score=28.77 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhhhhhH----hHhhhhhHHH
Q 038396 417 GGLVTGLVLGFNFSSIIVGW----FLDKLGMQQI 446 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 446 (456)
+|+++..+++++++.=++|. |.++++++++
T Consensus 3 ag~a~~~~lgYciYFD~KRR~dP~frkkL~~rrk 36 (121)
T PF02064_consen 3 AGVAAAAFLGYCIYFDYKRRSDPDFRKKLRERRK 36 (121)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHhhcccccccChHHHHHHHHHHH
Confidence 34444456666664433344 4444444433
No 152
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=31.86 E-value=63 Score=22.33 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHhhhhhhHhHhh
Q 038396 418 GLVTGLVLGFNFSSIIVGWFLDK 440 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~ 440 (456)
|++...+++.++..++..|+..+
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~ 34 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALR 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444333
No 153
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.78 E-value=29 Score=41.71 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.6
Q ss_pred EccCCCCCccCchhhhccCCCCeEeCCCcccc
Q 038396 271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ 302 (456)
Q Consensus 271 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 302 (456)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999988889999999999999999875
No 154
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=31.47 E-value=85 Score=18.47 Aligned_cols=9 Identities=0% Similarity=0.338 Sum_probs=3.7
Q ss_pred hhhhHhHhh
Q 038396 432 IIVGWFLDK 440 (456)
Q Consensus 432 ~~~~~~~~~ 440 (456)
+...|..++
T Consensus 22 fv~Ay~QY~ 30 (37)
T PF02529_consen 22 FVAAYLQYR 30 (37)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 444444333
No 155
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=31.07 E-value=19 Score=34.87 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=14.9
Q ss_pred eeehhhhhhhHH-HHHHHHHhhhhhhHhHhh
Q 038396 411 ILIGYAGGLVTG-LVLGFNFSSIIVGWFLDK 440 (456)
Q Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 440 (456)
+..|.++|+.++ |||+--++-|.-|||+.|
T Consensus 364 LstgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 334544444333 333333445776676655
No 156
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=30.91 E-value=83 Score=18.39 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.6
Q ss_pred hhhhHhHh
Q 038396 432 IIVGWFLD 439 (456)
Q Consensus 432 ~~~~~~~~ 439 (456)
|...|.-+
T Consensus 22 fvaAylQY 29 (37)
T CHL00008 22 FVTAYLQY 29 (37)
T ss_pred HHHHHHHH
Confidence 44444443
No 157
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.84 E-value=37 Score=26.92 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=8.2
Q ss_pred hhhhHHHHHHHHHhhhhhhH
Q 038396 417 GGLVTGLVLGFNFSSIIVGW 436 (456)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~ 436 (456)
+|+....+++++++.-+.+.
T Consensus 15 agiag~af~gYciYFd~KRr 34 (143)
T KOG4056|consen 15 AGIAGLAFIGYCIYFDKKRR 34 (143)
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 33333344444444333333
No 158
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=30.03 E-value=86 Score=18.32 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=3.6
Q ss_pred hhhhHhHh
Q 038396 432 IIVGWFLD 439 (456)
Q Consensus 432 ~~~~~~~~ 439 (456)
|...|.-+
T Consensus 22 fvaAylQY 29 (37)
T PRK00665 22 FVAAWNQY 29 (37)
T ss_pred HHHHHHHH
Confidence 44445443
No 159
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=29.09 E-value=96 Score=19.49 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHhhhhhhHhHh
Q 038396 418 GLVTGLVLGFNFSSIIVGWFLD 439 (456)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~ 439 (456)
+.+.+.++++++....+.|.+|
T Consensus 23 ~~ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 23 ATIGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555554455555554
No 160
>PRK11677 hypothetical protein; Provisional
Probab=28.15 E-value=21 Score=28.47 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.9
Q ss_pred ceeeeehhhhhhhHHHHHHHHHhh
Q 038396 408 WKIILIGYAGGLVTGLVLGFNFSS 431 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~ 431 (456)
|.++++++++|+++|.+++-+.-.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 778889999999999988887543
No 161
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=27.97 E-value=52 Score=16.95 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.0
Q ss_pred hhHhHhhhhhHHHhhhc
Q 038396 434 VGWFLDKLGMQQIATRK 450 (456)
Q Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (456)
..|..+++++-++++|+
T Consensus 3 ~kwrkkrmrrlkrkrr~ 19 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRKRRK 19 (26)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555544444443
No 162
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.53 E-value=49 Score=26.20 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHhhhhh
Q 038396 416 AGGLVTGLVLGFNFSSIIV 434 (456)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~ 434 (456)
++++++|+++++++..+..
T Consensus 3 ~i~lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556666666666655433
No 163
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.33 E-value=80 Score=24.75 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHhhhhhhHhHhhhhhHH
Q 038396 419 LVTGLVLGFNFSSIIVGWFLDKLGMQQ 445 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (456)
.++|+||++++.+.+.|.--+.+++++
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~~k~q~ 37 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRKLKQQQ 37 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhHH
Confidence 356666777666666666555555543
No 164
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.85 E-value=72 Score=23.20 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=2.7
Q ss_pred ceeeeeh
Q 038396 408 WKIILIG 414 (456)
Q Consensus 408 ~~~~~~~ 414 (456)
|.-+..+
T Consensus 34 ws~vv~v 40 (91)
T PF01708_consen 34 WSRVVEV 40 (91)
T ss_pred ceeEeee
Confidence 4333333
No 165
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=26.82 E-value=62 Score=30.58 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=4.6
Q ss_pred hhHhHhhhhh
Q 038396 434 VGWFLDKLGM 443 (456)
Q Consensus 434 ~~~~~~~~~~ 443 (456)
..|+.++.++
T Consensus 305 g~~~~~~~~r 314 (354)
T PF05795_consen 305 GSWFNRRRGR 314 (354)
T ss_pred chhhcccccc
Confidence 3455544443
No 166
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=26.66 E-value=61 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=17.1
Q ss_pred eehhhhhhhHHHHHHHHHhhhhhhHhHhhh
Q 038396 412 LIGYAGGLVTGLVLGFNFSSIIVGWFLDKL 441 (456)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
++-.+.|+++|+++.+++ ++++++...+
T Consensus 30 l~k~~~G~~~G~~~s~l~--frrR~~pv~l 57 (75)
T PF04418_consen 30 LVKTGLGFGIGVVFSLLF--FRRRAWPVAL 57 (75)
T ss_pred HHHHhhhhhHHHHHHHHH--HccchHHHHh
Confidence 344566777777777766 5555554443
No 167
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.36 E-value=1e+02 Score=18.90 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=7.2
Q ss_pred ccccccEEEccC
Q 038396 263 IPDILTGIILSS 274 (456)
Q Consensus 263 ~~~~L~~L~Ls~ 274 (456)
++++++.|.+..
T Consensus 10 iP~~l~~L~~g~ 21 (44)
T PF05725_consen 10 IPSSLKSLIFGS 21 (44)
T ss_pred eCCCCeEEEECC
Confidence 456677777643
No 168
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=25.11 E-value=36 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=12.2
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhHhHhhhhhH
Q 038396 414 GYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQ 444 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (456)
++++|++.+-.+..+++.....|..+++++.
T Consensus 29 ~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~ 59 (95)
T PF07178_consen 29 LFVIGILSGHFLIGLILGIVLWWGYRKFKKG 59 (95)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcc
Confidence 3334443333323333333334444554443
No 169
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=24.65 E-value=99 Score=23.41 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=9.4
Q ss_pred ceeeeehhhhhhhHHHHHHH
Q 038396 408 WKIILIGYAGGLVTGLVLGF 427 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~ 427 (456)
+.++.+|.++++++.++++.
T Consensus 60 ~~lffvglii~LivSLaLVs 79 (128)
T PF15145_consen 60 RSLFFVGLIIVLIVSLALVS 79 (128)
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 44455555555444444333
No 170
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=24.24 E-value=68 Score=30.60 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=4.1
Q ss_pred HhHhhhhhHH
Q 038396 436 WFLDKLGMQQ 445 (456)
Q Consensus 436 ~~~~~~~~~~ 445 (456)
|+.+++++++
T Consensus 318 ~~~~~~~~~~ 327 (361)
T PF12259_consen 318 WLYRTFRRRQ 327 (361)
T ss_pred hheeehHHHH
Confidence 4444444433
No 171
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=23.52 E-value=78 Score=25.54 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHhhhhhhHhHh
Q 038396 419 LVTGLVLGFNFSSIIVGWFLD 439 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~ 439 (456)
++++.++++++..+...|..+
T Consensus 98 ivvSTllvl~vtg~v~~~l~r 118 (141)
T PRK04125 98 IIVATILLLACTGLFSQFILG 118 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443344444443
No 172
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.35 E-value=65 Score=29.51 Aligned_cols=8 Identities=13% Similarity=-0.375 Sum_probs=3.2
Q ss_pred eehhhhhh
Q 038396 412 LIGYAGGL 419 (456)
Q Consensus 412 ~~~~~~~~ 419 (456)
...+++++
T Consensus 227 G~VVlIsl 234 (281)
T PF12768_consen 227 GFVVLISL 234 (281)
T ss_pred eEEEEEeh
Confidence 33334443
No 173
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=23.22 E-value=50 Score=23.57 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=8.4
Q ss_pred ceeeeehhhhhhhHHHHH
Q 038396 408 WKIILIGYAGGLVTGLVL 425 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (456)
|.++..+.+++++.+.+.
T Consensus 16 ~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 16 WYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeHHHhhccHHHHHHHHH
Confidence 444444444444444444
No 174
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.43 E-value=67 Score=30.88 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=0.0
Q ss_pred ceeeeehhhhhhhHHHHHHHHHhhhhhhHhHhhhhhHHHhhhccc
Q 038396 408 WKIILIGYAGGLVTGLVLGFNFSSIIVGWFLDKLGMQQIATRKKG 452 (456)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (456)
+.+.+.|+++++++++|++.+++.+..+....+...-.+.+.++.
T Consensus 63 HGlhaagFfvaflvslVL~~l~~f~l~r~~~l~~~~l~r~r~~~~ 107 (429)
T PF12297_consen 63 HGLHAAGFFVAFLVSLVLTWLCFFLLARTRCLQGRPLTRQRVQRH 107 (429)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhhhccccc
No 175
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=20.76 E-value=57 Score=25.49 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=13.9
Q ss_pred eeeeehhhhhhhHHHHHHHHHhhhhhhHhH
Q 038396 409 KIILIGYAGGLVTGLVLGFNFSSIIVGWFL 438 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (456)
.++++-+++++++++++..+.+++. +|++
T Consensus 99 ~Yia~~~il~il~~i~is~~~~~~y-r~~r 127 (139)
T PHA03099 99 SYIPSPGIVLVLVGIIITCCLLSVY-RFTR 127 (139)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhh-eeee
Confidence 4455455555555555554443333 4443
No 176
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.16 E-value=65 Score=33.77 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=9.9
Q ss_pred eeeeehhhhhhhHHHHHHHHH
Q 038396 409 KIILIGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (456)
.++++++++++++.+++.+++
T Consensus 272 T~fLl~ILG~~~livl~lL~v 292 (807)
T PF10577_consen 272 TVFLLAILGGTALIVLILLCV 292 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444433333
Done!