Query 038396
Match_columns 456
No_of_seqs 555 out of 4098
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-48 1.5E-52 404.8 29.8 342 43-389 369-755 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.6E-42 1.6E-46 359.2 24.5 354 3-372 283-716 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-41 9.9E-46 356.7 26.3 364 6-379 66-566 (844)
4 2id5_A Lingo-1, leucine rich r 100.0 3.5E-40 1.2E-44 327.3 22.6 328 16-377 33-360 (477)
5 3v47_A TOLL-like receptor 5B a 100.0 2.2E-39 7.5E-44 319.7 27.0 359 15-377 30-412 (455)
6 2id5_A Lingo-1, leucine rich r 100.0 1.3E-39 4.6E-44 323.1 23.2 324 17-378 13-338 (477)
7 4eco_A Uncharacterized protein 100.0 3.9E-39 1.3E-43 329.8 26.8 333 5-375 239-602 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-39 1.9E-43 328.3 26.7 212 160-379 347-564 (606)
9 3t6q_A CD180 antigen; protein- 100.0 1E-38 3.5E-43 326.3 25.6 302 67-378 255-565 (606)
10 4eco_A Uncharacterized protein 100.0 1.1E-38 3.8E-43 326.4 22.2 333 2-372 196-578 (636)
11 3v47_A TOLL-like receptor 5B a 100.0 3.5E-38 1.2E-42 311.1 23.0 322 2-356 43-414 (455)
12 4ecn_A Leucine-rich repeat pro 100.0 1.7E-37 5.7E-42 323.3 28.7 355 5-374 440-841 (876)
13 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-37 1.6E-41 315.7 27.4 361 4-378 45-585 (635)
14 1ogq_A PGIP-2, polygalacturona 100.0 1E-37 3.4E-42 291.7 19.8 259 42-382 50-312 (313)
15 2z63_A TOLL-like receptor 4, v 100.0 1.5E-37 5.2E-42 315.4 22.2 188 186-378 344-536 (570)
16 3t6q_A CD180 antigen; protein- 100.0 1.5E-36 5E-41 310.3 28.7 359 3-371 47-511 (606)
17 4ecn_A Leucine-rich repeat pro 100.0 1.2E-37 4.1E-42 324.4 20.7 357 1-372 335-818 (876)
18 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-36 4.2E-41 315.1 28.0 363 3-378 236-627 (680)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-36 4.5E-41 321.1 25.9 360 3-372 38-538 (844)
20 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-36 5E-41 310.3 25.1 182 186-372 347-533 (606)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-36 8.3E-41 305.6 25.7 344 14-378 30-515 (562)
22 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-37 2.9E-41 308.4 20.7 355 4-377 19-514 (549)
23 3o6n_A APL1; leucine-rich repe 100.0 2.2E-36 7.5E-41 292.0 22.2 309 14-377 44-356 (390)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-35 4E-40 298.1 25.9 111 264-378 373-486 (520)
25 1ziw_A TOLL-like receptor 3; i 100.0 9.3E-35 3.2E-39 300.9 32.2 332 2-355 261-627 (680)
26 2z63_A TOLL-like receptor 4, v 100.0 4.1E-36 1.4E-40 304.9 19.4 192 160-359 344-540 (570)
27 3o6n_A APL1; leucine-rich repe 100.0 7E-35 2.4E-39 281.5 26.1 318 4-377 59-378 (390)
28 3oja_B Anopheles plasmodium-re 100.0 1.3E-35 4.6E-40 301.8 21.9 308 14-376 50-361 (597)
29 2z7x_B TOLL-like receptor 1, v 100.0 8E-35 2.7E-39 292.0 23.8 329 4-355 14-486 (520)
30 4fmz_A Internalin; leucine ric 100.0 9.6E-34 3.3E-38 269.2 28.5 306 9-372 40-345 (347)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-34 1.1E-38 290.1 26.4 318 41-371 30-461 (562)
32 3oja_B Anopheles plasmodium-re 100.0 3.3E-34 1.1E-38 291.6 26.1 319 4-377 65-384 (597)
33 2ft3_A Biglycan; proteoglycan, 100.0 7E-34 2.4E-38 268.3 26.5 285 16-370 34-330 (332)
34 1ogq_A PGIP-2, polygalacturona 100.0 9.2E-35 3.1E-39 271.6 16.7 249 15-349 50-303 (313)
35 1xku_A Decorin; proteoglycan, 100.0 3.9E-33 1.3E-37 263.0 27.1 286 16-370 32-329 (330)
36 4fmz_A Internalin; leucine ric 100.0 5.7E-33 2E-37 263.9 28.0 288 5-350 59-346 (347)
37 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-33 4.9E-38 284.8 24.2 202 14-226 4-208 (549)
38 1o6v_A Internalin A; bacterial 100.0 6.1E-33 2.1E-37 274.1 27.1 326 9-374 64-389 (466)
39 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-32 9.5E-37 280.2 28.9 342 5-356 68-586 (635)
40 2z80_A TOLL-like receptor 2, v 100.0 3E-33 1E-37 266.3 17.3 278 14-354 30-318 (353)
41 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-32 1.8E-36 255.5 25.6 267 42-374 33-308 (332)
42 1xku_A Decorin; proteoglycan, 100.0 7.8E-32 2.7E-36 254.1 24.5 270 42-374 31-307 (330)
43 1o6v_A Internalin A; bacterial 100.0 1.3E-31 4.6E-36 264.5 26.4 322 14-373 45-366 (466)
44 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-31 1E-35 260.3 26.9 302 5-351 34-353 (457)
45 2z66_A Variable lymphocyte rec 100.0 2.3E-31 7.8E-36 248.2 23.3 251 17-354 9-265 (306)
46 3zyi_A Leucine-rich repeat-con 100.0 8.1E-31 2.8E-35 257.9 26.3 253 43-355 55-308 (452)
47 1jl5_A Outer protein YOPM; leu 100.0 1.3E-30 4.4E-35 255.5 26.5 190 2-226 47-249 (454)
48 3zyj_A Leucine-rich repeat-con 100.0 7.7E-31 2.6E-35 257.1 24.7 252 44-355 45-297 (440)
49 3bz5_A Internalin-J, INLJ; leu 100.0 2E-30 6.8E-35 254.3 27.3 313 5-355 57-392 (457)
50 1jl5_A Outer protein YOPM; leu 100.0 3.4E-30 1.2E-34 252.5 27.8 265 42-351 131-410 (454)
51 3zyi_A Leucine-rich repeat-con 100.0 9.5E-31 3.2E-35 257.4 23.8 253 67-378 55-308 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 1E-30 3.5E-35 256.2 23.7 253 67-378 44-297 (440)
53 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-31 6.3E-36 246.2 17.3 249 69-375 14-263 (285)
54 1ozn_A Reticulon 4 receptor; N 100.0 1E-30 3.5E-35 241.2 19.4 252 18-356 14-267 (285)
55 2z80_A TOLL-like receptor 2, v 100.0 7.1E-31 2.4E-35 249.9 17.4 278 41-377 30-318 (353)
56 2z66_A Variable lymphocyte rec 100.0 7.9E-30 2.7E-34 237.8 18.7 265 4-355 21-292 (306)
57 4fcg_A Uncharacterized protein 100.0 1.6E-29 5.4E-34 237.5 19.3 226 65-350 80-314 (328)
58 1wwl_A Monocyte differentiatio 100.0 2.7E-31 9.2E-36 248.2 6.7 248 41-351 42-310 (312)
59 4fcg_A Uncharacterized protein 100.0 2.9E-29 9.9E-34 235.7 18.8 226 41-326 80-314 (328)
60 3o53_A Protein LRIM1, AGAP0063 100.0 1.2E-30 4.1E-35 244.3 9.3 262 47-352 15-278 (317)
61 3g06_A SSPH2 (leucine-rich rep 100.0 3.8E-28 1.3E-32 245.1 27.5 262 15-355 40-302 (622)
62 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-31 5.8E-36 263.8 1.3 322 6-352 49-413 (461)
63 2z62_A TOLL-like receptor 4, v 100.0 1.6E-27 5.5E-32 218.7 21.4 227 71-356 12-243 (276)
64 3oja_A Leucine-rich immune mol 100.0 3.6E-29 1.2E-33 247.6 11.0 149 42-202 34-182 (487)
65 1wwl_A Monocyte differentiatio 100.0 1.7E-29 5.8E-34 235.9 6.6 253 61-373 38-309 (312)
66 3oja_A Leucine-rich immune mol 100.0 5.2E-29 1.8E-33 246.4 9.9 219 65-351 33-251 (487)
67 1z7x_W Ribonuclease inhibitor; 100.0 1E-30 3.5E-35 258.2 -3.6 353 15-371 3-409 (461)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-26 8.9E-31 231.8 24.9 255 4-337 54-308 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 7.5E-28 2.6E-32 225.3 12.7 241 67-351 11-251 (317)
70 2o6q_A Variable lymphocyte rec 99.9 4.3E-26 1.5E-30 208.3 22.8 207 67-355 17-223 (270)
71 2z62_A TOLL-like receptor 4, v 99.9 2E-26 6.9E-31 211.4 19.8 211 42-329 28-240 (276)
72 1p9a_G Platelet glycoprotein I 99.9 5.7E-26 1.9E-30 209.4 20.8 206 62-353 6-211 (290)
73 2o6q_A Variable lymphocyte rec 99.9 3E-25 1E-29 202.7 21.3 201 15-226 16-217 (270)
74 1p9a_G Platelet glycoprotein I 99.9 2E-25 6.9E-30 205.7 19.4 207 111-377 6-212 (290)
75 3rfs_A Internalin B, repeat mo 99.9 1.6E-25 5.6E-30 204.7 17.0 228 16-314 20-247 (272)
76 3rfs_A Internalin B, repeat mo 99.9 1.8E-25 6E-30 204.4 15.8 222 67-356 20-241 (272)
77 4glp_A Monocyte differentiatio 99.9 1.7E-25 5.8E-30 208.7 13.5 231 66-351 64-308 (310)
78 2xwt_C Thyrotropin receptor; s 99.9 7.1E-25 2.4E-29 196.6 16.4 196 92-347 32-236 (239)
79 3goz_A Leucine-rich repeat-con 99.9 2.4E-26 8.3E-31 219.2 6.3 109 43-152 23-151 (362)
80 2xwt_C Thyrotropin receptor; s 99.9 2.4E-24 8.3E-29 193.0 16.2 197 67-324 32-237 (239)
81 3m19_A Variable lymphocyte rec 99.9 7.3E-24 2.5E-28 191.3 19.4 180 15-204 14-194 (251)
82 3m19_A Variable lymphocyte rec 99.9 3.9E-24 1.3E-28 193.1 16.4 182 92-354 15-196 (251)
83 2ca6_A RAN GTPase-activating p 99.9 2.1E-26 7.2E-31 221.7 1.4 249 58-354 24-320 (386)
84 3goz_A Leucine-rich repeat-con 99.9 7.4E-26 2.5E-30 215.8 5.1 259 46-352 2-299 (362)
85 1h6u_A Internalin H; cell adhe 99.9 1.8E-23 6E-28 194.6 17.9 79 267-351 153-231 (308)
86 4ay9_X Follicle-stimulating ho 99.9 1.3E-23 4.4E-28 199.3 15.2 185 18-214 12-202 (350)
87 2ast_B S-phase kinase-associat 99.9 4.2E-25 1.4E-29 208.6 4.9 251 43-355 48-311 (336)
88 2ca6_A RAN GTPase-activating p 99.9 4.1E-25 1.4E-29 212.8 4.7 235 41-330 31-320 (386)
89 4glp_A Monocyte differentiatio 99.9 1.3E-23 4.5E-28 195.8 13.4 231 42-327 64-308 (310)
90 4ay9_X Follicle-stimulating ho 99.9 4E-23 1.4E-27 195.9 16.3 241 45-348 12-257 (350)
91 3ogk_B Coronatine-insensitive 99.9 4.2E-25 1.4E-29 224.9 -3.4 88 264-351 435-527 (592)
92 1h6u_A Internalin H; cell adhe 99.9 3.8E-22 1.3E-26 185.5 16.8 193 9-226 37-229 (308)
93 2o6s_A Variable lymphocyte rec 99.9 5.3E-22 1.8E-26 173.8 15.8 175 17-208 9-184 (208)
94 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.3E-28 196.5 6.8 255 15-335 47-315 (336)
95 2o6s_A Variable lymphocyte rec 99.9 1.1E-21 3.6E-26 171.9 14.6 127 70-202 11-137 (208)
96 3ogk_B Coronatine-insensitive 99.9 2.5E-24 8.5E-29 219.2 -3.5 108 264-371 402-524 (592)
97 2v70_A SLIT-2, SLIT homolog 2 99.9 5.2E-21 1.8E-25 168.7 16.1 151 18-176 14-166 (220)
98 3cvr_A Invasion plasmid antige 99.9 5.3E-21 1.8E-25 190.8 18.0 187 67-336 60-253 (571)
99 2v9t_B SLIT homolog 2 protein 99.9 7.4E-21 2.5E-25 167.7 16.1 151 18-176 14-165 (220)
100 3cvr_A Invasion plasmid antige 99.9 3.3E-21 1.1E-25 192.2 15.3 181 92-354 60-247 (571)
101 2xot_A Amphoterin-induced prot 99.9 2.8E-21 9.7E-26 183.9 13.5 176 17-202 20-202 (361)
102 1h6t_A Internalin B; cell adhe 99.8 1.3E-20 4.3E-25 173.7 15.7 176 9-207 42-217 (291)
103 2xot_A Amphoterin-induced prot 99.8 1.4E-20 4.8E-25 179.1 15.9 154 45-202 21-176 (361)
104 2v9t_B SLIT homolog 2 protein 99.8 2.7E-20 9.1E-25 164.2 15.6 154 44-203 13-166 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 3.5E-20 1.2E-24 163.4 16.3 159 44-208 13-172 (220)
106 3e6j_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 163.3 17.0 151 17-176 21-172 (229)
107 1h6t_A Internalin B; cell adhe 99.8 1.5E-20 5E-25 173.3 12.7 122 68-202 26-147 (291)
108 2p1m_B Transport inhibitor res 99.8 2.4E-22 8.3E-27 204.6 -1.5 86 264-350 431-519 (594)
109 2p1m_B Transport inhibitor res 99.8 6.9E-23 2.4E-27 208.6 -5.5 349 14-372 104-518 (594)
110 1m9s_A Internalin B; cell inva 99.8 9.1E-20 3.1E-24 183.8 16.4 172 14-206 42-213 (605)
111 3e6j_A Variable lymphocyte rec 99.8 1.9E-19 6.6E-24 159.7 16.0 157 42-205 19-175 (229)
112 1m9s_A Internalin B; cell inva 99.8 6.5E-20 2.2E-24 184.9 14.2 127 63-202 40-166 (605)
113 4ezg_A Putative uncharacterize 99.8 1.9E-19 6.6E-24 155.9 12.6 151 41-202 43-194 (197)
114 4ezg_A Putative uncharacterize 99.8 2.1E-19 7.2E-24 155.7 12.1 151 63-225 41-192 (197)
115 1xeu_A Internalin C; cellular 99.8 2.7E-19 9.1E-24 162.2 10.7 40 285-326 146-185 (263)
116 1xeu_A Internalin C; cellular 99.8 2.5E-19 8.4E-24 162.5 9.8 172 14-207 18-189 (263)
117 1dce_A Protein (RAB geranylger 99.8 4.4E-21 1.5E-25 192.3 -4.2 204 63-344 346-567 (567)
118 4b8c_D Glucose-repressible alc 99.8 6.5E-20 2.2E-24 189.5 4.0 142 58-206 216-358 (727)
119 1w8a_A SLIT protein; signaling 99.8 5.7E-19 2E-23 152.1 8.9 113 266-378 55-167 (192)
120 1w8a_A SLIT protein; signaling 99.8 8.7E-18 3E-22 144.7 14.7 127 18-152 11-139 (192)
121 1dce_A Protein (RAB geranylger 99.8 4.5E-21 1.5E-25 192.2 -7.3 192 87-356 346-552 (567)
122 4b8c_D Glucose-repressible alc 99.7 8E-19 2.8E-23 181.3 6.3 157 41-206 172-333 (727)
123 3sb4_A Hypothetical leucine ri 99.7 6.6E-18 2.2E-22 158.6 11.4 271 41-354 24-314 (329)
124 2ell_A Acidic leucine-rich nuc 99.7 6.2E-18 2.1E-22 142.5 9.2 132 42-176 24-160 (168)
125 2wfh_A SLIT homolog 2 protein 99.7 4.8E-17 1.6E-21 140.1 13.8 107 67-175 32-138 (193)
126 2wfh_A SLIT homolog 2 protein 99.7 5.9E-17 2E-21 139.5 14.3 128 17-153 12-140 (193)
127 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4E-22 156.8 10.7 264 14-344 24-328 (329)
128 2ell_A Acidic leucine-rich nuc 99.7 1.4E-17 4.6E-22 140.4 9.5 137 64-206 22-163 (168)
129 2o6r_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 134.9 13.7 110 67-177 29-138 (177)
130 2je0_A Acidic leucine-rich nuc 99.7 1.3E-17 4.4E-22 137.5 6.2 107 43-152 18-126 (149)
131 2o6r_A Variable lymphocyte rec 99.7 2.2E-16 7.4E-21 134.2 12.9 133 68-206 9-141 (177)
132 4fdw_A Leucine rich hypothetic 99.7 1.5E-15 5.1E-20 145.6 19.8 241 42-350 113-358 (401)
133 2je0_A Acidic leucine-rich nuc 99.7 3.1E-17 1.1E-21 135.2 6.5 128 65-197 16-148 (149)
134 4fdw_A Leucine rich hypothetic 99.7 3.7E-15 1.3E-19 142.9 20.6 267 14-350 112-383 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 4.4E-16 1.5E-20 132.1 8.5 136 62-202 15-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 6.7E-16 2.3E-20 130.9 8.4 104 67-175 43-152 (176)
137 1ds9_A Outer arm dynein; leuci 99.6 1.7E-17 5.7E-22 143.8 -5.7 136 59-202 41-185 (198)
138 3g39_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 122.0 11.2 104 69-176 12-115 (170)
139 2r9u_A Variable lymphocyte rec 99.5 2.7E-14 9.3E-19 120.5 11.3 104 69-176 15-118 (174)
140 3g39_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 119.2 11.6 105 45-153 12-116 (170)
141 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 134.5 -0.9 153 9-177 14-186 (198)
142 2r9u_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 117.1 11.7 104 45-152 15-118 (174)
143 4fs7_A Uncharacterized protein 99.5 1.3E-12 4.3E-17 125.7 20.8 311 8-347 66-376 (394)
144 3un9_A NLR family member X1; l 99.5 1.5E-15 5E-20 144.3 -3.8 165 14-178 71-254 (372)
145 3un9_A NLR family member X1; l 99.4 1.2E-14 4E-19 138.1 -1.1 161 41-202 71-252 (372)
146 2ifg_A High affinity nerve gro 99.4 2.6E-12 8.8E-17 121.3 11.4 102 47-152 13-116 (347)
147 2ifg_A High affinity nerve gro 99.4 1.8E-12 6E-17 122.5 10.0 90 264-354 30-120 (347)
148 4fs7_A Uncharacterized protein 99.3 4.1E-11 1.4E-15 115.1 18.2 303 8-342 89-393 (394)
149 4gt6_A Cell surface protein; l 99.3 2.6E-10 9E-15 109.4 20.3 198 8-221 58-295 (394)
150 4gt6_A Cell surface protein; l 99.2 2.7E-09 9.4E-14 102.3 24.1 288 42-350 64-370 (394)
151 2ra8_A Uncharacterized protein 99.0 2.6E-10 8.9E-15 107.3 5.2 83 264-348 251-341 (362)
152 2ra8_A Uncharacterized protein 99.0 4.1E-10 1.4E-14 105.9 6.5 160 111-324 168-341 (362)
153 4h09_A Hypothetical leucine ri 99.0 1.5E-07 5.1E-12 89.6 23.9 291 8-347 41-343 (379)
154 4h09_A Hypothetical leucine ri 98.9 1.8E-07 6.1E-12 89.1 23.3 266 41-347 45-320 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 2.4E-09 8.1E-14 90.9 2.3 117 58-175 28-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 6.7E-09 2.3E-13 88.1 4.3 111 41-152 35-164 (185)
157 3rw6_A Nuclear RNA export fact 98.6 1.3E-08 4.5E-13 90.7 2.1 62 114-177 169-234 (267)
158 3rw6_A Nuclear RNA export fact 98.6 4.2E-08 1.4E-12 87.5 4.7 104 62-169 137-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 2.5E-07 8.4E-12 76.5 2.2 84 265-348 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 3.3E-07 1.1E-11 75.8 1.0 82 92-173 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.6E-05 5.6E-10 66.9 4.4 115 60-175 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1E-05 3.5E-10 68.1 2.4 110 92-201 42-169 (197)
163 3rfe_A Platelet glycoprotein I 97.6 0.00012 4.1E-09 57.6 6.5 60 293-354 12-72 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00056 1.9E-08 53.7 5.3 36 92-127 32-67 (130)
165 2ks1_B Epidermal growth factor 90.3 0.13 4.6E-06 30.9 1.8 10 416-425 14-23 (44)
166 2l2t_A Receptor tyrosine-prote 90.0 0.14 4.9E-06 30.7 1.7 15 415-429 12-26 (44)
167 2ks1_B Epidermal growth factor 80.6 0.82 2.8E-05 27.4 1.7 20 410-429 12-31 (44)
168 2k1k_A Ephrin type-A receptor 74.7 2.7 9.4E-05 24.3 2.8 16 414-429 11-26 (38)
169 2l2t_A Receptor tyrosine-prote 74.1 2.1 7.1E-05 25.6 2.2 20 410-429 11-30 (44)
170 2lz0_A Uncharacterized protein 74.1 6.3 0.00022 28.6 5.4 40 132-172 13-52 (100)
171 2jwa_A Receptor tyrosine-prote 72.9 2.1 7.2E-05 25.6 2.0 8 417-424 15-22 (44)
172 2klu_A T-cell surface glycopro 65.9 1.2 4E-05 28.9 -0.1 17 414-430 13-29 (70)
173 2knc_B Integrin beta-3; transm 62.7 6.3 0.00022 27.1 3.1 12 410-421 12-23 (79)
174 2lz0_A Uncharacterized protein 61.0 10 0.00035 27.4 4.2 47 102-149 7-53 (100)
175 2lx0_A Membrane fusion protein 52.3 14 0.00049 19.1 2.5 12 432-443 20-31 (32)
176 2l9u_A Receptor tyrosine-prote 50.5 16 0.00056 20.1 2.7 17 414-430 7-23 (40)
177 2jp3_A FXYD domain-containing 46.4 14 0.00046 24.2 2.4 11 404-414 10-20 (67)
178 2zxe_G FXYD10, phospholemman-l 45.8 12 0.0004 25.0 2.0 12 403-414 11-22 (74)
179 2k9j_B Integrin beta-3; transm 45.4 29 0.00099 20.6 3.6 6 417-422 14-19 (43)
180 2klu_A T-cell surface glycopro 38.4 11 0.00036 24.6 0.9 11 419-429 12-22 (70)
181 2jo1_A Phospholemman; FXYD1, N 37.3 28 0.00097 22.9 2.8 8 437-444 40-47 (72)
182 2k9y_A Ephrin type-A receptor 37.1 11 0.00038 21.9 0.9 7 418-424 18-24 (41)
183 1afo_A Glycophorin A; integral 31.4 51 0.0018 18.8 2.9 12 416-427 16-27 (40)
184 1q90_G Cytochrome B6F complex 30.3 64 0.0022 18.1 3.1 8 432-439 22-29 (37)
185 3cx5_D Cytochrome C1, heme pro 29.0 26 0.00089 30.0 2.2 24 424-447 217-240 (248)
186 1zza_A Stannin, AG8_1; helix, 26.0 42 0.0014 22.1 2.2 12 432-443 31-42 (90)
187 1vf5_G Protein PET G; photosyn 23.0 60 0.002 18.2 2.1 15 413-427 7-21 (37)
188 2l34_A TYRO protein tyrosine k 23.0 72 0.0025 17.6 2.5 8 416-423 9-16 (33)
189 2ifo_A Inovirus; helical virus 21.6 95 0.0033 18.6 3.0 21 419-439 24-44 (46)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-48 Score=404.82 Aligned_cols=342 Identities=32% Similarity=0.482 Sum_probs=234.8
Q ss_pred CCcEEEccCCccccccchhhhc--CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 43 ETILYLVSNNSLTGEIPSWICN--LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 43 ~L~~L~ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+|+.|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..++ +|++|++++|.+++..|..|..+++|++|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 4555555555554444444443 45566666666666556666666665 66666666666666666666666666666
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 200 (456)
++++|++++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|++++..+..+ ..+++|++|++++|.
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCc
Confidence 666666666666666666666666666666666666666666666666666666666555444 566667777777776
Q ss_pred CcCCCChhhhhCccccccccccCccccccccCCCCCccccc----cccccceeE--------------------------
Q 038396 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL----ISTYDYSLI-------------------------- 250 (456)
Q Consensus 201 l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------------------------- 250 (456)
++|.+|. .+..+++|+.+++++|.+.......+....... .........
T Consensus 526 l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 526 FSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CEEECCG-GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred ccCcCCH-HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 6666663 356666677777666655322211111000000 000000000
Q ss_pred -------------eeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCe
Q 038396 251 -------------MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLES 317 (456)
Q Consensus 251 -------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 317 (456)
....+........++.|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|++
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 0000001111223567999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCccCC
Q 038396 318 LDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPLSKGCESDEARA 389 (456)
Q Consensus 318 L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c~~~~~~~ 389 (456)
|||++|++++.+|..+..+++|++||+++|+++|.+|...++.++...+|.|||++||.|+. .|....+..
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~ 755 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADG 755 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 887655443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-42 Score=359.23 Aligned_cols=354 Identities=30% Similarity=0.418 Sum_probs=214.6
Q ss_pred cCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCccccccchh-hhcCCCCCeeecccCcC
Q 038396 3 GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSW-ICNLNTVKNLVLSHNNL 78 (456)
Q Consensus 3 g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l 78 (456)
|.+|+.+... +++|++|+|++|+++ +.+|.. +++|+.|++++|.+++.+|.. +..+++|++|++++|.+
T Consensus 283 ~~ip~~~~~~-~~~L~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 283 GEIPDFLSGA-CDTLTGLDLSGNHFY------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp ESCCCCSCTT-CTTCSEEECCSSEEE------ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CccCHHHHhh-cCcCCEEECcCCcCC------CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 4566655541 266666666666654 233322 566666666666666555543 66666666666666666
Q ss_pred ccccChhhhhCCCCCcEEEccCCccceeCCccccC--CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC
Q 038396 79 SGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIK--ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP 156 (456)
Q Consensus 79 ~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 156 (456)
++.+|..+..+..+|++|++++|.+++..|..+.. +++|++|++++|++++.+|..+..+++|++|++++|.+++..|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 66666666555434566666665555555544444 4555555555555555555555555555555555555555555
Q ss_pred ccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCC
Q 038396 157 SWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236 (456)
Q Consensus 157 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~ 236 (456)
..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++.+|. .+..+++|+.+++++|++.......+..
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 555555555555555555554444333 4445555555555555544442 2445555555555554432111111110
Q ss_pred ccccccccccceeEeeccCc---ccccccccccccEEEccCCCCCccCch------------------------------
Q 038396 237 VSTDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPT------------------------------ 283 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~------------------------------ 283 (456)
.. ... .+....+.. .......+++|++|++++|.+++.+|.
T Consensus 513 l~----~L~--~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 513 LE----NLA--ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CT----TCC--EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred CC----CCC--EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 00 000 000000000 011111245566666666666554443
Q ss_pred ----------------------------------------hhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCC
Q 038396 284 ----------------------------------------SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323 (456)
Q Consensus 284 ----------------------------------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 323 (456)
.+..+++|+.|||++|++++.+|..++.+++|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 4445678999999999999999999999999999999999
Q ss_pred cccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCC
Q 038396 324 RFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSG 372 (456)
Q Consensus 324 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 372 (456)
++++.+|..+..+++|+.|||++|+++|.+|.. ..++.++.+++.+|+.
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999999999999999999999999999975 5677888888998864
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=356.69 Aligned_cols=364 Identities=22% Similarity=0.234 Sum_probs=239.6
Q ss_pred ChhhhhhcCCCCCEEEccCCCCC------------------CCCcCccCCCC-----CCCCCcEEEccCCccccccc-hh
Q 038396 6 PKWLLDPSMQYLNALNLSHNLLT------------------SSNNLQGPLPV-----PPPETILYLVSNNSLTGEIP-SW 61 (456)
Q Consensus 6 p~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~l~~~~~~-----~~~~L~~L~ls~n~l~~~~~-~~ 61 (456)
|..|.+ +++|++|+|++|.|+ +.|.+.+.++. .+++|++|++++|.+++..+ ..
T Consensus 66 ~~~f~~--L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 143 (844)
T 3j0a_A 66 KEAFRN--LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143 (844)
T ss_dssp TTTTSS--CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred HHHhcC--CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh
Confidence 445666 666666666666665 22333333322 26677777777777765543 46
Q ss_pred hhcCCCCCeeecccCcCccccChhhhhC--CCC------------------------------CcEEEccCCccceeCCc
Q 038396 62 ICNLNTVKNLVLSHNNLSGVLPQCLGNF--SDE------------------------------LSVLDLQGNNFFGTIPD 109 (456)
Q Consensus 62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~------------------------------L~~L~Ls~n~i~~~~~~ 109 (456)
|.++++|++|++++|.+++..+..+..+ . + |++|++++|.+++..+.
T Consensus 144 ~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp GGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred HhhCCCCCEEECCCCcCCeeCHHHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 7777777777777777765555554433 1 2 44444444443322222
Q ss_pred ccc------------------------------------C--CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcC
Q 038396 110 TFI------------------------------------K--ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 151 (456)
Q Consensus 110 ~~~------------------------------------~--l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i 151 (456)
.+. + .++|++|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 302 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC
Confidence 111 1 14677788888888777777888888888888888888
Q ss_pred CcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccccc
Q 038396 152 SDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI 231 (456)
Q Consensus 152 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~ 231 (456)
++..|..|..+++|++|++++|++.+..+..+ ..+++|++|++++|.+. .++...|..+++|+.|++++|.+.....
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~ 379 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF 379 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred CCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC
Confidence 87777788888888888888888877766555 67788888888888887 5665667778888888887766432110
Q ss_pred -----------CCCCCcccccccc----------------------c-cceeEeeccCcc----cccccccccccEEEcc
Q 038396 232 -----------SPYGQVSTDLIST----------------------Y-DYSLIMNSKGRM----MTYNKIPDILTGIILS 273 (456)
Q Consensus 232 -----------~~~~~~~~~~~~~----------------------~-~~~~~~~~~~~~----~~~~~~~~~L~~L~Ls 273 (456)
..+..++...... . ...+....+... ......+++|+.|+++
T Consensus 380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 0111111000000 0 001111111110 1111224667777777
Q ss_pred CCCCC-----ccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCc
Q 038396 274 SNRFD-----RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348 (456)
Q Consensus 274 ~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ 348 (456)
+|.++ +..+..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|+
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 77776 33345677889999999999999988888889999999999999999876666554 789999999999
Q ss_pred CcccCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 038396 349 LTGAIPLGKQFATFDNTSFDGNSGLCGRPLS 379 (456)
Q Consensus 349 l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~ 379 (456)
+++..|.. +..+..+++.+||+.|+|++.
T Consensus 538 l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 538 LLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred CCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 99888853 668888999999999988753
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=327.31 Aligned_cols=328 Identities=18% Similarity=0.160 Sum_probs=179.5
Q ss_pred CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 16 YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 16 ~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
++++|||++|+|+. +.......+++|++|++++|.+++..|.+|.++++|++|+|++|.+++..+..|..++ +|++
T Consensus 33 ~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTK 108 (477)
T ss_dssp TCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCE
T ss_pred CCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCE
Confidence 45555555555541 1111112245555555555555554455555555555555555555532223344444 5555
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 55555555555555555555555555555555554455555555555555555555544444455555555555555555
Q ss_pred cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (456)
.+..+..+ ..+++|++|++++|...+.++...+.. .+|+.++++++.+...
T Consensus 189 ~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~-------------------------- 239 (477)
T 2id5_A 189 NAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAV-------------------------- 239 (477)
T ss_dssp CEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSC--------------------------
T ss_pred cEeChhhc--ccCcccceeeCCCCccccccCcccccC-ccccEEECcCCccccc--------------------------
Confidence 55443333 445555555555554444444332222 2444444444432100
Q ss_pred cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhc
Q 038396 256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE 335 (456)
Q Consensus 256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 335 (456)
.......+++|++|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..
T Consensus 240 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 240 -PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp -CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred -CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 0001112456777777777777766666777777777777777777777777777777777777777777655556667
Q ss_pred CCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396 336 FTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 336 l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 377 (456)
+++|+.|++++|++.|.++..+.+.......+.++...|..|
T Consensus 319 l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 319 VGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 777777777777777766544444444444556666666554
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-39 Score=319.71 Aligned_cols=359 Identities=18% Similarity=0.164 Sum_probs=219.2
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccccc-chhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEI-PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
++|++|||++|.|+. +.......+++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++. +|
T Consensus 30 ~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA-NL 105 (455)
T ss_dssp TTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT-TC
T ss_pred CccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc-cC
Confidence 456666666665541 11111112555666666666554322 44555566666666666666555555555555 56
Q ss_pred cEEEccCCccceeCCcc--ccCCCCccEEeccCCcCcccCCcc-ccCCCCCcEEeCcCCcCCcCCCccccCC--CCCCEE
Q 038396 94 SVLDLQGNNFFGTIPDT--FIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGNNQISDTFPSWLGTI--PNLNVL 168 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L 168 (456)
++|++++|.+++..+.. |..+++|++|++++|++++..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 66666666655433322 555566666666666665544443 5556666666666666655555555443 455666
Q ss_pred EccCCcccccCCCCCC------ccCCCCccEEecccccCcCCCChhhhh--CccccccccccCccccccccC--CCCCcc
Q 038396 169 ILRSNKFYGIIKEPRT------DCRFSKLHIIDLSNNRFTGKLPSKSFL--CLDAMKIVNTSQLRYLQDVIS--PYGQVS 238 (456)
Q Consensus 169 ~L~~n~l~~~~~~~~~------~~~l~~L~~L~ls~n~l~~~~~~~~~~--~l~~l~~l~l~~~~~~~~~~~--~~~~~~ 238 (456)
++++|.+.+..+..+. ...+++|++|++++|.+++..|..... ...+++.++++.+........ .+....
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 6666655554333221 123456777777777666444432211 124555555555433211100 000000
Q ss_pred cccc-c---cccceeEeeccCc---ccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccC
Q 038396 239 TDLI-S---TYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 311 (456)
Q Consensus 239 ~~~~-~---~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 311 (456)
.... . .....+....... .......+++|++|++++|.+++..+..+..+++|++|+|++|++++..|..|..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 0000 0 0011111111111 1122234678999999999999988999999999999999999999888999999
Q ss_pred CCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCC
Q 038396 312 LTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 312 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 377 (456)
+++|++|+|++|++++..|..+..+++|++|++++|++++..+.. ..++.++.+++.+|++.|++|
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999888999999999999999999999765543 567889999999999999987
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=323.11 Aligned_cols=324 Identities=21% Similarity=0.230 Sum_probs=285.3
Q ss_pred CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
-+.++.++++++ .+|.. .+.++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.+++ +|++
T Consensus 13 ~~~v~c~~~~l~-------~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~ 84 (477)
T 2id5_A 13 DRAVLCHRKRFV-------AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRT 84 (477)
T ss_dssp TTEEECCSCCCS-------SCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCE
T ss_pred CCEEEeCCCCcC-------cCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCE
Confidence 468999999887 55554 57899999999999988889999999999999999999988899999998 8999
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
|++++|.++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 99999999977777899999999999999999988899999999999999999999988888999999999999999999
Q ss_pred cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (456)
+++.+..+ ..+++|+.|++++|.+. .++...+..+++|+.++++++...........
T Consensus 165 ~~~~~~~l--~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------- 221 (477)
T 2id5_A 165 TSIPTEAL--SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-------------------- 221 (477)
T ss_dssp SSCCHHHH--TTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTT--------------------
T ss_pred cccChhHh--cccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCCCCccccccCcccc--------------------
Confidence 88755444 78899999999999998 56667788999999999998765433221111
Q ss_pred cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhc
Q 038396 256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE 335 (456)
Q Consensus 256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 335 (456)
...+|++|++++|.+++..+..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..+..
T Consensus 222 -------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 222 -------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp -------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred -------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 0236999999999999877788999999999999999999888889999999999999999999988999999
Q ss_pred CCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396 336 FTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 336 l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
+++|+.|++++|.+++..+.. ..++.++.+++.+|++.|+|+.
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 999999999999999765533 4567888999999999998753
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.9e-39 Score=329.77 Aligned_cols=333 Identities=18% Similarity=0.235 Sum_probs=284.4
Q ss_pred CChhhh--hhcCCCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccCCc-ccc-ccchhhhcC------CCCCee
Q 038396 5 IPKWLL--DPSMQYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSNNS-LTG-EIPSWICNL------NTVKNL 71 (456)
Q Consensus 5 ip~~~~--~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~n~-l~~-~~~~~~~~l------~~L~~L 71 (456)
+|+.+. + +++|++|+|++|.+. +.+|.. +++|++|++++|+ +++ .+|..+..+ ++|++|
T Consensus 239 ip~~l~~~~--l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 239 KTEDLKWDN--LKDLTDVEVYNCPNL------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TTSCCCGGG--CTTCCEEEEECCTTC------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred Cchhhhhcc--cCCCCEEEecCCcCC------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 999988 9 999999999999875 456654 7899999999998 998 899988887 999999
Q ss_pred ecccCcCccccCh--hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCC-CcEEeCcC
Q 038396 72 VLSHNNLSGVLPQ--CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEFLDLGN 148 (456)
Q Consensus 72 ~Ls~n~l~~~~~~--~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~Ls~ 148 (456)
++++|.++ .+|. .+..++ +|++|++++|.+++.+| .|..+++|++|++++|+++ .+|..+..+++ |++|++++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred ECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 99999999 8998 899998 89999999999998899 8999999999999999999 88888999999 99999999
Q ss_pred CcCCcCCCccccCCC--CCCEEEccCCcccccCCCCCC-----ccCCCCccEEecccccCcCCCChhhhhCccccccccc
Q 038396 149 NQISDTFPSWLGTIP--NLNVLILRSNKFYGIIKEPRT-----DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221 (456)
Q Consensus 149 n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l 221 (456)
|.++ .+|..+..++ +|++|++++|.+.+..+..+. ...+++|++|++++|.++ .+|...+..+++|+.+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence 9999 7888887655 899999999999987766551 016779999999999999 899888889999999999
Q ss_pred cCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhh--ccCCCCeEeCCCc
Q 038396 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA--NLKGLQVLNLDNN 299 (456)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n 299 (456)
++|.+.......+... ....+.+++|++|+|++|.++. +|..+. .+++|+.|+|++|
T Consensus 465 s~N~l~~i~~~~~~~~--------------------~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 465 MGNMLTEIPKNSLKDE--------------------NENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CSSCCSBCCSSSSEET--------------------TEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS
T ss_pred CCCCCCCcCHHHhccc--------------------cccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC
Confidence 9987631111000000 0000112379999999999996 666776 9999999999999
Q ss_pred cccccCCccccCCCCCCeeeC------CCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCC
Q 038396 300 NLQGHIPSCLGNLTNLESLDL------SNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGL 373 (456)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l 373 (456)
++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|... .+.++.+++.+|+..
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNI 600 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTC
T ss_pred CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCc
Confidence 9996 8999999999999999 56788889999999999999999999999 6778653 378999999999987
Q ss_pred CC
Q 038396 374 CG 375 (456)
Q Consensus 374 c~ 375 (456)
|-
T Consensus 601 ~~ 602 (636)
T 4eco_A 601 SI 602 (636)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-39 Score=328.34 Aligned_cols=212 Identities=17% Similarity=0.141 Sum_probs=151.6
Q ss_pred cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccccc-CCCCCcc
Q 038396 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI-SPYGQVS 238 (456)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~ 238 (456)
..+++|++|++++|++++....+..+..+++|++|++++|.++ .+| ..+..+++|+.++++++.+..... ..+...
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l- 423 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL- 423 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTC-
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhcc-
Confidence 3456777778888877765322222366777888888888776 455 446777777777777776533321 111110
Q ss_pred ccccccccceeEeeccCc---ccccccccccccEEEccCCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396 239 TDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 314 (456)
.... .+....... .......+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++
T Consensus 424 ---~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 424 ---EKLL--YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp ---TTCC--EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ---ccCC--EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 0000 011111111 11122336789999999999987 47888999999999999999999999999999999
Q ss_pred CCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCC-CCCCcccCCCCCCCCCCCC
Q 038396 315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFA-TFDNTSFDGNSGLCGRPLS 379 (456)
Q Consensus 315 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~~~~~~n~~lc~~~~~ 379 (456)
|++|++++|++++..|..+..+++|+.|++++|+++...+....++ .++.+++.+||+.|+|+..
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999998889999999999999999999994433334454 4888999999999998853
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-38 Score=326.27 Aligned_cols=302 Identities=18% Similarity=0.187 Sum_probs=204.2
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
+|++|++++|.+++..+..+..++ +|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 455666666666655555566665 6777777777766 55666666777777777777776666666667777777777
Q ss_pred cCCcCCcCCCc-cccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcc
Q 038396 147 GNNQISDTFPS-WLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225 (456)
Q Consensus 147 s~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~ 225 (456)
++|.+.+.++. .+..+++|++|++++|.+.+....+..+..+++|++|++++|.+. .++...+..+++|+.++++++.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCc
Confidence 77766644433 366667777777777766655411222256666777777777666 3333446666666666666665
Q ss_pred ccccccCC-CCCccccccccccceeEeeccC---cccccccccccccEEEccCCCCCcc---CchhhhccCCCCeEeCCC
Q 038396 226 YLQDVISP-YGQVSTDLISTYDYSLIMNSKG---RMMTYNKIPDILTGIILSSNRFDRV---IPTSIANLKGLQVLNLDN 298 (456)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~L~~ 298 (456)
+....... +... .... .+...... ........+++|++|++++|.+++. .+..+..+++|+.|++++
T Consensus 412 l~~~~~~~~~~~l----~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 412 LKVKDAQSPFQNL----HLLK--VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp EECCTTCCTTTTC----TTCC--EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCCcccchhhhCc----ccCC--EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 43221111 1110 0000 01111110 1111223367899999999999873 235788999999999999
Q ss_pred ccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCC
Q 038396 299 NNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 299 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 377 (456)
|++++..|..|..+++|++|+|++|++++..|..+..++.| +|++++|++++..|.. ..++.++.+++.+||+.|+|+
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998889999999999999999999999999999999999 9999999999877753 456778889999999999876
Q ss_pred C
Q 038396 378 L 378 (456)
Q Consensus 378 ~ 378 (456)
.
T Consensus 565 ~ 565 (606)
T 3t6q_A 565 N 565 (606)
T ss_dssp G
T ss_pred c
Confidence 3
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-38 Score=326.40 Aligned_cols=333 Identities=20% Similarity=0.217 Sum_probs=278.3
Q ss_pred ccCCChhhhhhcCCCCCEEEccCCCCCCCC-----------cCccCCCC-----CCCCCcEEEccCCccccccchhhhcC
Q 038396 2 HGKIPKWLLDPSMQYLNALNLSHNLLTSSN-----------NLQGPLPV-----PPPETILYLVSNNSLTGEIPSWICNL 65 (456)
Q Consensus 2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~-----------~l~~~~~~-----~~~~L~~L~ls~n~l~~~~~~~~~~l 65 (456)
+| ||+.|.+ +++|++|+|++|.++... ...+.+|. .+++|++|++++|.+.+.+|..|.++
T Consensus 196 ~~-ip~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 196 TF-VSKAVMR--LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EE-ECGGGGG--CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred cc-CCHHHhc--ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 46 9999999 999999999999987310 00001443 36799999999999999999999999
Q ss_pred CCCCeeecccCc-Ccc-ccChhhhhC------CCCCcEEEccCCccceeCCc--cccCCCCccEEeccCCcCcccCCccc
Q 038396 66 NTVKNLVLSHNN-LSG-VLPQCLGNF------SDELSVLDLQGNNFFGTIPD--TFIKESRLGVIDLSHNLFQGRIPRSL 135 (456)
Q Consensus 66 ~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l 135 (456)
++|++|++++|+ +++ .+|..++.+ + +|++|++++|.++ .+|. .|..+++|++|++++|++++.+| .+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 999999999998 998 899999886 6 8999999999999 7888 89999999999999999998888 89
Q ss_pred cCCCCCcEEeCcCCcCCcCCCccccCCCC-CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhh---
Q 038396 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPN-LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFL--- 211 (456)
Q Consensus 136 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~--- 211 (456)
..+++|++|++++|.++ .+|..+..+++ |++|++++|+++.+ +..+....+++|++|++++|.+++.+|.. +.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~ 426 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLD 426 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTC
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhh-hcccc
Confidence 99999999999999998 78888999999 99999999999954 44443334558999999999999776643 44
Q ss_pred ----CccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhc
Q 038396 212 ----CLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN 287 (456)
Q Consensus 212 ----~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 287 (456)
.+.+|+.+++++|.+... .......++.|++|+|++|.++.+++..+..
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~l---------------------------p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKF---------------------------PKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSC---------------------------CTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred cccccCCCCCEEECcCCccCcC---------------------------CHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 667899999988776210 0011112567999999999999755555444
Q ss_pred cC-------CCCeEeCCCccccccCCcccc--CCCCCCeeeCCCCcccccCchhhhcCCCCCEEec------cCCcCccc
Q 038396 288 LK-------GLQVLNLDNNNLQGHIPSCLG--NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDV------SDNYLTGA 352 (456)
Q Consensus 288 l~-------~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l------s~N~l~~~ 352 (456)
.. +|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 33 9999999999999 7888887 99999999999999996 8999999999999999 56788888
Q ss_pred CCCC-CCCCCCCCcccCCCCC
Q 038396 353 IPLG-KQFATFDNTSFDGNSG 372 (456)
Q Consensus 353 ~p~~-~~~~~l~~~~~~~n~~ 372 (456)
+|.. ..++.++.+++.+|..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC
T ss_pred ChHHHhcCCCCCEEECCCCcC
Confidence 8865 5678888999999976
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-38 Score=311.09 Aligned_cols=322 Identities=19% Similarity=0.180 Sum_probs=255.3
Q ss_pred ccCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccc
Q 038396 2 HGKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV 81 (456)
Q Consensus 2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 81 (456)
++..|..|.+ +++|++|+|++|.+.. .+.......+++|++|++++|.+++..|..|.++++|++|++++|.+++.
T Consensus 43 ~~~~~~~~~~--l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 43 AELNETSFSR--LQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp CEECTTTTSS--CTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred CcCChhHhcc--CccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence 4556788999 9999999999998751 11112223388999999999999988899999999999999999999875
Q ss_pred cChh--hhhCCCCCcEEEccCCccceeCCcc-ccCCCCccEEeccCCcCcccCCccccCC--CCCcEEeCcCCcCCcCCC
Q 038396 82 LPQC--LGNFSDELSVLDLQGNNFFGTIPDT-FIKESRLGVIDLSHNLFQGRIPRSLVNC--SKLEFLDLGNNQISDTFP 156 (456)
Q Consensus 82 ~~~~--~~~l~~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--~~L~~L~Ls~n~i~~~~~ 156 (456)
.+.. +..++ +|++|++++|.+++..|.. |..+++|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+
T Consensus 119 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~ 197 (455)
T 3v47_A 119 VLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197 (455)
T ss_dssp HHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred ccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccch
Confidence 5554 88888 8999999999999887776 8899999999999999998888877765 566777777777665433
Q ss_pred ccc--------cCCCCCCEEEccCCcccccCCC-------------------------------------CCCccCCCCc
Q 038396 157 SWL--------GTIPNLNVLILRSNKFYGIIKE-------------------------------------PRTDCRFSKL 191 (456)
Q Consensus 157 ~~~--------~~l~~L~~L~L~~n~l~~~~~~-------------------------------------~~~~~~l~~L 191 (456)
..+ ..+++|++|++++|++.+..+. .+.....++|
T Consensus 198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence 322 2445667777776665432111 1111123688
Q ss_pred cEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEE
Q 038396 192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII 271 (456)
Q Consensus 192 ~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 271 (456)
++|++++|.+++. +...+..+++|+.++++++.+.......+. .+++|++|+
T Consensus 278 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------------------------~l~~L~~L~ 329 (455)
T 3v47_A 278 KTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFW---------------------------GLTHLLKLN 329 (455)
T ss_dssp CEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTT---------------------------TCTTCCEEE
T ss_pred eEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhc---------------------------CcccCCEEE
Confidence 9999999998844 445688888999999988776332221111 256799999
Q ss_pred ccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 272 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 351 (456)
+++|.+++..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|+++|
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999999889999999999999999999998889999999999999999999997777778999999999999999999
Q ss_pred cCCCC
Q 038396 352 AIPLG 356 (456)
Q Consensus 352 ~~p~~ 356 (456)
.+|..
T Consensus 410 ~~~~~ 414 (455)
T 3v47_A 410 SCPRI 414 (455)
T ss_dssp CTTTT
T ss_pred CCCcc
Confidence 99954
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-37 Score=323.27 Aligned_cols=355 Identities=17% Similarity=0.144 Sum_probs=265.7
Q ss_pred CChhhhhhcCCCCCEEEccCCCCCCC-----------CcCccCCCC-----CCCCCcEEEccCCccccccchhhhcCCCC
Q 038396 5 IPKWLLDPSMQYLNALNLSHNLLTSS-----------NNLQGPLPV-----PPPETILYLVSNNSLTGEIPSWICNLNTV 68 (456)
Q Consensus 5 ip~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~l~~~~~~-----~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 68 (456)
||+.|.+ +++|++|+|++|+|+.. +.+.|.+|. .+++|+.|++++|.+.+.+|..|.++++|
T Consensus 440 IP~~l~~--L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQR--LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGG--CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhc--CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 8999999 99999999999998730 001112554 36789999999999999999999999999
Q ss_pred CeeecccCc-Ccc-ccChhhhhCC------CCCcEEEccCCccceeCCc--cccCCCCccEEeccCCcCcccCCccccCC
Q 038396 69 KNLVLSHNN-LSG-VLPQCLGNFS------DELSVLDLQGNNFFGTIPD--TFIKESRLGVIDLSHNLFQGRIPRSLVNC 138 (456)
Q Consensus 69 ~~L~Ls~n~-l~~-~~~~~~~~l~------~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 138 (456)
++|++++|+ +++ .+|..++.+. ++|++|++++|.++ .+|. .|..+++|++|++++|+++ .+| .|..+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 887 7888777653 37999999999999 7787 8999999999999999999 777 89999
Q ss_pred CCCcEEeCcCCcCCcCCCccccCCCC-CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhh--hh--Cc
Q 038396 139 SKLEFLDLGNNQISDTFPSWLGTIPN-LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKS--FL--CL 213 (456)
Q Consensus 139 ~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~--~~--~l 213 (456)
++|+.|++++|.++ .+|..+..+++ |++|++++|+++.+ +..+.....++|+.|++++|.+.+.+|.-. +. .+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 99999999999998 78888899998 99999999998854 344422233448888888888876554211 11 23
Q ss_pred cccccccccCccccccccCCCCCccccccccccceeEeeccC-ccccccc-------ccccccEEEccCCCCCccCchhh
Q 038396 214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG-RMMTYNK-------IPDILTGIILSSNRFDRVIPTSI 285 (456)
Q Consensus 214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~L~~L~Ls~n~l~~~~~~~l 285 (456)
.+|+.|++++|.+.......+. .........+...... ....... .+++|+.|+|++|+++. +|..+
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~----~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l 747 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFA----TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF 747 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHH----TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGG
T ss_pred CCcCEEEccCCcCCccCHHHHc----cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHh
Confidence 4677777777665311000000 0000000111000000 0000111 12379999999999995 66677
Q ss_pred h--ccCCCCeEeCCCccccccCCccccCCCCCCeeeCCC------CcccccCchhhhcCCCCCEEeccCCcCcccCCCCC
Q 038396 286 A--NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN------NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357 (456)
Q Consensus 286 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~ 357 (456)
. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~- 824 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK- 824 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-
T ss_pred hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-
Confidence 6 89999999999999996 788899999999999976 788889999999999999999999999 678875
Q ss_pred CCCCCCCcccCCCCCCC
Q 038396 358 QFATFDNTSFDGNSGLC 374 (456)
Q Consensus 358 ~~~~l~~~~~~~n~~lc 374 (456)
..+.++.+++.+|+...
T Consensus 825 l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 825 LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCSSSCEEECCSCTTCE
T ss_pred hcCCCCEEECCCCCCCc
Confidence 33688888899998643
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-37 Score=315.68 Aligned_cols=361 Identities=20% Similarity=0.218 Sum_probs=242.2
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP 83 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 83 (456)
.||+.+. +++++|||++|+|+ .+.......+++|++|+|++|+|+++.+++|.++++|++|+|++|++++..+
T Consensus 45 ~vP~~lp----~~~~~LdLs~N~i~---~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 45 KIPDNLP----FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSSC----TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred ccCCCCC----cCCCEEEeeCCCCC---CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4665552 37899999999887 2222222337889999999999987778889999999999999999985555
Q ss_pred hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396 84 QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162 (456)
Q Consensus 84 ~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 162 (456)
..|.++. +|++|++++|++++..+..|+++++|++|++++|++++. .|..+..+++|++|++++|++++..+..+..+
T Consensus 118 ~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 6778887 899999999999877777888999999999999988753 56778888999999999988876555444322
Q ss_pred CCC----CEEEccCCcccccCCCC--------------------------------------------------------
Q 038396 163 PNL----NVLILRSNKFYGIIKEP-------------------------------------------------------- 182 (456)
Q Consensus 163 ~~L----~~L~L~~n~l~~~~~~~-------------------------------------------------------- 182 (456)
.++ ..++++.|.+..+.+..
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 111 12223222221111000
Q ss_pred --------------------------------------------------------------------------------
Q 038396 183 -------------------------------------------------------------------------------- 182 (456)
Q Consensus 183 -------------------------------------------------------------------------------- 182 (456)
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence
Q ss_pred --------CCccCCCCccEEecccccCcC--CCChh----------------------hhhCccccccccccCccccccc
Q 038396 183 --------RTDCRFSKLHIIDLSNNRFTG--KLPSK----------------------SFLCLDAMKIVNTSQLRYLQDV 230 (456)
Q Consensus 183 --------~~~~~l~~L~~L~ls~n~l~~--~~~~~----------------------~~~~l~~l~~l~l~~~~~~~~~ 230 (456)
.....+++|+.+++++|.+.. ..+.. .+..++.++.+++..+......
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 000123444445555444421 01110 0112223333333332221111
Q ss_pred cCCCCCccccccccccc-eeEeeccC---cccccccccccccEEEccCCCC-CccCchhhhccCCCCeEeCCCccccccC
Q 038396 231 ISPYGQVSTDLISTYDY-SLIMNSKG---RMMTYNKIPDILTGIILSSNRF-DRVIPTSIANLKGLQVLNLDNNNLQGHI 305 (456)
Q Consensus 231 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 305 (456)
... ........ ........ ........++.++.|++++|.+ ....|..+..+++|++|+|++|++++..
T Consensus 437 ~~~------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 437 EFS------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp SSC------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccc------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence 100 00000000 11111111 1122233467899999999975 4557788999999999999999999999
Q ss_pred CccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC-CC-CCCCCcccCCCCCCCCCCC
Q 038396 306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK-QF-ATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 306 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~~n~~lc~~~~ 378 (456)
|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..|... .+ ..++.+++.+||+.|+|.+
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999999999999998888899999999999999999999888652 33 5788899999999999864
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-37 Score=291.70 Aligned_cols=259 Identities=30% Similarity=0.455 Sum_probs=185.6
Q ss_pred CCCcEEEccCCcccc--ccchhhhcCCCCCeeeccc-CcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCcc
Q 038396 42 PETILYLVSNNSLTG--EIPSWICNLNTVKNLVLSH-NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG 118 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 118 (456)
.+++.|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..+..++ +|++|++++|.+++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456666666666665 5666666666666666663 666656666666665 566666666666656666666666666
Q ss_pred EEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCC-CCCEEEccCCcccccCCCCCCccCCCCccEEecc
Q 038396 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP-NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLS 197 (456)
Q Consensus 119 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls 197 (456)
+|++++|++++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++..+..+ ..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-------- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-------- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC--------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc--------
Confidence 666666666655666666666666666666666555555555554 55555555555543332222 1111
Q ss_pred cccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCC
Q 038396 198 NNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRF 277 (456)
Q Consensus 198 ~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 277 (456)
|++|++++|.+
T Consensus 199 ---------------------------------------------------------------------L~~L~Ls~N~l 209 (313)
T 1ogq_A 199 ---------------------------------------------------------------------LAFVDLSRNML 209 (313)
T ss_dssp ---------------------------------------------------------------------CSEEECCSSEE
T ss_pred ---------------------------------------------------------------------ccEEECcCCcc
Confidence 56666666666
Q ss_pred CccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC
Q 038396 278 DRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK 357 (456)
Q Consensus 278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~ 357 (456)
++..|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 666777888899999999999999966665 8889999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCC
Q 038396 358 QFATFDNTSFDGNSGLCGRPLSKGC 382 (456)
Q Consensus 358 ~~~~l~~~~~~~n~~lc~~~~~~~c 382 (456)
.++.++.+++.+|+++||.|+. .|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccccChHHhcCCCCccCCCCC-CC
Confidence 8999999999999999998876 36
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=315.36 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=143.1
Q ss_pred cCCCCccEEecccccCcCCCC-hhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec--cCccccccc
Q 038396 186 CRFSKLHIIDLSNNRFTGKLP-SKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS--KGRMMTYNK 262 (456)
Q Consensus 186 ~~l~~L~~L~ls~n~l~~~~~-~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 262 (456)
..+++|++|++++|.+++... ...+..+++|+.++++++.+...... +... .......+.... .........
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l----~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL----EQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC----TTCCEEECTTSEEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cccc----CCCCEEEccCCccccccchhhhh
Confidence 457889999999999874321 34578899999999998876332211 1110 011111110000 000111223
Q ss_pred ccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccc-ccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCE
Q 038396 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341 (456)
Q Consensus 263 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 341 (456)
.+++|++|++++|.+.+..+..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 4678999999999999989999999999999999999998 578999999999999999999999888999999999999
Q ss_pred EeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396 342 FDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 342 L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
|++++|++++..|.. ..++.++.+++.+|++.|+|+.
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999877754 5678889999999999998774
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-36 Score=310.35 Aligned_cols=359 Identities=16% Similarity=0.105 Sum_probs=179.2
Q ss_pred cCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 3 GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 3 g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
+..|..|.+ +++|++|+|++|+++. +.......+++|++|++++|.+++..|..|.++++|++|++++|.+++..
T Consensus 47 ~~~~~~~~~--l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 47 TIQNTTFSR--LINLTFLDLTRCQIYW---IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp EECTTTSTT--CTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred cCChhHhcc--CccceEEECCCCccce---eChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 334556777 7777777777777651 11111122566666666666666555666666666666666666666444
Q ss_pred ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc--EEeCcCCc----------
Q 038396 83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE--FLDLGNNQ---------- 150 (456)
Q Consensus 83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~--~L~Ls~n~---------- 150 (456)
+..+..+. +|++|++++|.+++.....+..+++|++|++++|++++..+..+..+++|+ .|++++|.
T Consensus 122 ~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 122 FIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred cchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 44555555 566666666665543323333355555555555555544444444444443 33333333
Q ss_pred -----------------------------------------------------------------CCcCCCccccCCCCC
Q 038396 151 -----------------------------------------------------------------ISDTFPSWLGTIPNL 165 (456)
Q Consensus 151 -----------------------------------------------------------------i~~~~~~~~~~l~~L 165 (456)
+++..+..|+.+++|
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 333333335556666
Q ss_pred CEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCC-CCCccc-----
Q 038396 166 NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISP-YGQVST----- 239 (456)
Q Consensus 166 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~-~~~~~~----- 239 (456)
++|++++|+++.++ ..+ ..+++|++|++++|.++ .++...+..+++|+.++++++......... +.....
T Consensus 281 ~~L~l~~n~l~~lp-~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 281 QELDLTATHLSELP-SGL--VGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp SEEECTTSCCSCCC-SSC--CSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CEEeccCCccCCCC-hhh--cccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 77777776666442 222 55666666666666665 333344556666666666655432111110 100000
Q ss_pred --------------cccccc-cceeEeeccCc---ccccccccccccEEEccCCCCCccCch-hhhccCCCCeEeCCCcc
Q 038396 240 --------------DLISTY-DYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPT-SIANLKGLQVLNLDNNN 300 (456)
Q Consensus 240 --------------~~~~~~-~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~ 300 (456)
.+.... ...+....... .......+++|++|++++|.+.+..+. .+..+++|++|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 000000 00000000000 011111234455555555555544332 25555556666666665
Q ss_pred ccccCCccccCCCCCCeeeCCCCccccc---CchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCC
Q 038396 301 LQGHIPSCLGNLTNLESLDLSNNRFSGQ---IPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNS 371 (456)
Q Consensus 301 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~ 371 (456)
+++..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..|.. ..++.++.+++.+|.
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 5555555555556666666666655541 1234555566666666666665554432 344555555555554
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-37 Score=324.40 Aligned_cols=357 Identities=20% Similarity=0.254 Sum_probs=245.5
Q ss_pred CccCCChhhhhhcCCCCCEEEc-cCCCCCCC-------------------------------------------------
Q 038396 1 IHGKIPKWLLDPSMQYLNALNL-SHNLLTSS------------------------------------------------- 30 (456)
Q Consensus 1 l~g~ip~~~~~~~l~~L~~L~L-s~N~l~~~------------------------------------------------- 30 (456)
|+|.+|+.|.+ +++|++||| ++|.++..
T Consensus 335 L~G~ip~~l~~--L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 335 AKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp CEEEECGGGGG--CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCcCchHHhc--cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 57899999999 999999999 88864311
Q ss_pred ----------------------CcCccCCCCC---CCCCcEEEccCCcccc-----------------ccchhhh--cCC
Q 038396 31 ----------------------NNLQGPLPVP---PPETILYLVSNNSLTG-----------------EIPSWIC--NLN 66 (456)
Q Consensus 31 ----------------------~~l~~~~~~~---~~~L~~L~ls~n~l~~-----------------~~~~~~~--~l~ 66 (456)
|.+.+ +|.. +++|+.|++++|.+++ .+|..+. +++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 23333 5543 6788888888888887 2777766 888
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCc-cce-eCCccccCC-------CCccEEeccCCcCcccCCc--cc
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN-FFG-TIPDTFIKE-------SRLGVIDLSHNLFQGRIPR--SL 135 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~-i~~-~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~--~l 135 (456)
+|++|+|++|.+.+.+|..+.+++ +|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .+
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 888888888888888888888887 78888888887 776 666655544 48888888888888 6777 78
Q ss_pred cCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCC-ccEEecccccCcCCCChhhhhCcc
Q 038396 136 VNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK-LHIIDLSNNRFTGKLPSKSFLCLD 214 (456)
Q Consensus 136 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~l~ 214 (456)
..+++|++|++++|.++ .+| .++.+++|+.|++++|++..+ +..+ ..+++ |+.|++++|.++ .+|. .+..+.
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l--~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~ 642 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEI-PEDF--CAFTDQVEGLGFSHNKLK-YIPN-IFNAKS 642 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCC-CTTS--CEECTTCCEEECCSSCCC-SCCS-CCCTTC
T ss_pred hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccc-hHHH--hhccccCCEEECcCCCCC-cCch-hhhccc
Confidence 88888888888888887 667 788888888888888888733 3334 66777 888888888887 7773 344443
Q ss_pred --ccccccccCccccccccCCCCCccccccccccceeEeeccCc---ccccccccccccEEEccCCCCCccCchhhhc--
Q 038396 215 --AMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFDRVIPTSIAN-- 287 (456)
Q Consensus 215 --~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-- 287 (456)
+|+.+++++|.+...... +..............+....+.. .......++.|+.|+|++|.++.+++..+..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~-l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRN-ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSS-CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred cCCCCEEECcCCcCCCcccc-chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 388888888766322110 00000000000001111111111 1111123466888888888887543333332
Q ss_pred -----cCCCCeEeCCCccccccCCcccc--CCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC------CcCcccCC
Q 038396 288 -----LKGLQVLNLDNNNLQGHIPSCLG--NLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD------NYLTGAIP 354 (456)
Q Consensus 288 -----l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~------N~l~~~~p 354 (456)
+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 237888888888887 6677776 78888888888888875 677777888888888865 66777777
Q ss_pred CC-CCCCCCCCcccCCCCC
Q 038396 355 LG-KQFATFDNTSFDGNSG 372 (456)
Q Consensus 355 ~~-~~~~~l~~~~~~~n~~ 372 (456)
.. ..++.++.+++.+|..
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCCC
Confidence 54 4566777777777764
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-36 Score=315.05 Aligned_cols=363 Identities=19% Similarity=0.181 Sum_probs=233.9
Q ss_pred cCCChhhhhhcCC--CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcc
Q 038396 3 GKIPKWLLDPSMQ--YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSG 80 (456)
Q Consensus 3 g~ip~~~~~~~l~--~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 80 (456)
+..|..|.. ++ +|++|++++|+++. +.......+++|+.|++++|.+++..|..|.++++|++|++++|...+
T Consensus 236 ~~~~~~~~~--l~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 236 TTSNTTFLG--LKWTNLTMLDLSYNNLNV---VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp EECTTTTGG--GGGSCCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred ccChhHhhc--cCcCCCCEEECCCCCcCc---cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 344555655 43 37777777777651 111111235677777777777776666677777777777776654332
Q ss_pred -----ccCh----hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcc--cCCccccCC--CCCcEEeCc
Q 038396 81 -----VLPQ----CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG--RIPRSLVNC--SKLEFLDLG 147 (456)
Q Consensus 81 -----~~~~----~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l--~~L~~L~Ls 147 (456)
.+|. .+..++ +|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..|..+ ++|+.|+++
T Consensus 311 ~~~~~~lp~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp ------CCEECTTTTTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred ccccccccccChhhcccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 1221 455565 67777777777777666777777777777777765431 122223222 466667777
Q ss_pred CCcCCcCCCccccCCCCCCEEEccCCcccccCC-CCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIK-EPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
+|.+++..|.++..+++|++|++++|.+.+..+ ..+ ..+++|++|++++|.+. .++...|..++.|+.++++++..
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc--cCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccc
Confidence 777776667777777777777777777765433 233 56777777777777776 44555566777777777766554
Q ss_pred ccc--ccCCCCCccccccccccceeEeecc-CcccccccccccccEEEccCCCCCccCc--------hhhhccCCCCeEe
Q 038396 227 LQD--VISPYGQVSTDLISTYDYSLIMNSK-GRMMTYNKIPDILTGIILSSNRFDRVIP--------TSIANLKGLQVLN 295 (456)
Q Consensus 227 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~ 295 (456)
... ....+.. ........+..... .........+++|++|++++|.+++..+ ..+..+++|+.|+
T Consensus 467 ~~~~~~p~~~~~----l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 467 KNVDSSPSPFQP----LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp BCTTCSSCTTTT----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccCCccccc----CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 211 0000100 00000011100000 1111112335779999999999887522 2378889999999
Q ss_pred CCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC--CCCCCCCcccCCCCCC
Q 038396 296 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK--QFATFDNTSFDGNSGL 373 (456)
Q Consensus 296 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~~n~~l 373 (456)
|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|... .++.++.+++.+||+.
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 99999995555678999999999999999997666778899999999999999997666432 4678888999999999
Q ss_pred CCCCC
Q 038396 374 CGRPL 378 (456)
Q Consensus 374 c~~~~ 378 (456)
|+|+.
T Consensus 623 c~c~~ 627 (680)
T 1ziw_A 623 CTCES 627 (680)
T ss_dssp BCCCC
T ss_pred cCCcc
Confidence 99874
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=321.14 Aligned_cols=360 Identities=20% Similarity=0.154 Sum_probs=218.3
Q ss_pred cCCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 3 GKIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 3 g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
+..|..|.+ +++|++|||++|.+.. .+.......+++|++|++++|.+++..|++|.++++|++|+|++|.+++.+
T Consensus 38 ~i~~~~~~~--l~~L~~LdLs~n~~~~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 38 TVTASSFPF--LEQLQLLELGSQYTPL--TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp EECSSSCSS--CCSCSEEEECTTCCCC--EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred ccChhHCcc--cccCeEEeCCCCCCcc--ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 344556666 6777777777764320 111111223778888888888888777888888888888888888887655
Q ss_pred Chh--hhhCCCCCcEEEccCCccceeCC-ccccCCCCccEEeccCCcCcccCCccccCC---------------------
Q 038396 83 PQC--LGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNC--------------------- 138 (456)
Q Consensus 83 ~~~--~~~l~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l--------------------- 138 (456)
|.. +..++ +|++|++++|.+++..+ ..|.++++|++|++++|.+++..+..+..+
T Consensus 114 ~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 114 LKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp STTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred ccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence 554 66776 78888888888876544 467778888888888877765433322211
Q ss_pred -------------------------------------------------------------------------CCCcEEe
Q 038396 139 -------------------------------------------------------------------------SKLEFLD 145 (456)
Q Consensus 139 -------------------------------------------------------------------------~~L~~L~ 145 (456)
++|+.|+
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 2344444
Q ss_pred CcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcc
Q 038396 146 LGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLR 225 (456)
Q Consensus 146 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~ 225 (456)
+++|.+++..+..+..+++|+.|++++|++.+..+..+ ..+++|++|++++|.++ .++...+..+++|+.+++++|.
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNH 349 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCC
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCC
Confidence 44444444444455556666666666666665555444 55666666666666665 3433446666666666666655
Q ss_pred ccccccCCCCCccc------------cccccc-cceeEeeccCcccccc-------------------------cccccc
Q 038396 226 YLQDVISPYGQVST------------DLISTY-DYSLIMNSKGRMMTYN-------------------------KIPDIL 267 (456)
Q Consensus 226 ~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~L 267 (456)
+.......+..... .+.... ........+. ...+. ..+++|
T Consensus 350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 350 IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCcc
Confidence 42221111111100 000000 0000000000 00001 124556
Q ss_pred cEEEccCCCCCccCch-hhhccCCCCeEeCCCcccc-----ccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCE
Q 038396 268 TGIILSSNRFDRVIPT-SIANLKGLQVLNLDNNNLQ-----GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341 (456)
Q Consensus 268 ~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 341 (456)
++|++++|.+++..+. .+..+++|+.|+|++|.++ +..+..|..+++|++|+|++|++++..|..+..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 6666666666654332 3445667777777777775 334456888999999999999999888888999999999
Q ss_pred EeccCCcCcccCCCCCCCCCCCCcccCCCCC
Q 038396 342 FDVSDNYLTGAIPLGKQFATFDNTSFDGNSG 372 (456)
Q Consensus 342 L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~ 372 (456)
|+|++|++++..|.... +.++.+++.+|..
T Consensus 509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp EEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred eECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 99999999976654433 6677777777653
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-36 Score=310.33 Aligned_cols=182 Identities=16% Similarity=0.084 Sum_probs=136.8
Q ss_pred cCCCCccEEecccccCcCCC-ChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec--cCccccccc
Q 038396 186 CRFSKLHIIDLSNNRFTGKL-PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS--KGRMMTYNK 262 (456)
Q Consensus 186 ~~l~~L~~L~ls~n~l~~~~-~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 262 (456)
..+++|++|++++|.+++.. ....+..+++|+.++++++.+.... ..+... .......+.... .........
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGL----EELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTC----TTCCEEECTTSEEESTTTTTTTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCC----CCCCeeECCCCccCCccChhhhh
Confidence 46789999999999998432 1355889999999999998763321 222111 111111110000 001112223
Q ss_pred ccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccc-cCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCE
Q 038396 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEF 341 (456)
Q Consensus 263 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 341 (456)
.+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..+..+++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 46789999999999999889999999999999999999997 47889999999999999999999888999999999999
Q ss_pred EeccCCcCcccCCCC-CCCCCCCCcccCCCCC
Q 038396 342 FDVSDNYLTGAIPLG-KQFATFDNTSFDGNSG 372 (456)
Q Consensus 342 L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 372 (456)
|++++|++++..|.. ..++.++.+++.+|..
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 999999999887754 4577788888888863
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-36 Score=305.58 Aligned_cols=344 Identities=22% Similarity=0.247 Sum_probs=234.3
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE 92 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~ 92 (456)
+...+++|+++|+++ .+|.. .++++.|++++|.+++..+.+|.++++|++|++++|.+++..|..|..++ +
T Consensus 30 ~~~~~~l~ls~~~L~-------~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNLT-------HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-D 101 (562)
T ss_dssp ---CCEEECTTSCCC-------SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-T
T ss_pred cCCCcEEEcCCCCCc-------cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-C
Confidence 445578888888877 34443 46788888888888877777888888888888888888877777788777 7
Q ss_pred CcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCcCCcCCCccccCCCCC--CEEE
Q 038396 93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNL--NVLI 169 (456)
Q Consensus 93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--~~L~ 169 (456)
|++|++++|.++ .+|.. .+++|++|++++|++++. .|..|.++++|++|++++|.+++. .+..+++| ++|+
T Consensus 102 L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL 175 (562)
T ss_dssp CCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE
T ss_pred CCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEE
Confidence 888888888888 44544 678888888888888753 357788888888888888887643 33444444 7777
Q ss_pred ccCCcc--cccCCCCCCc--------------------------------------------------------------
Q 038396 170 LRSNKF--YGIIKEPRTD-------------------------------------------------------------- 185 (456)
Q Consensus 170 L~~n~l--~~~~~~~~~~-------------------------------------------------------------- 185 (456)
+++|.+ ++..+..+..
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 777776 4333222200
Q ss_pred -----------------cCCCCccEEecccccCcCCCChhhh--------------------------------------
Q 038396 186 -----------------CRFSKLHIIDLSNNRFTGKLPSKSF-------------------------------------- 210 (456)
Q Consensus 186 -----------------~~l~~L~~L~ls~n~l~~~~~~~~~-------------------------------------- 210 (456)
...++|++|++++|.++|.+|...+
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 0012566677777777666654321
Q ss_pred --------------hCccccccccccCccccccccCCCCCccccccccccceeEeeccCcc---cccccccccccEEEcc
Q 038396 211 --------------LCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRM---MTYNKIPDILTGIILS 273 (456)
Q Consensus 211 --------------~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls 273 (456)
..+++|+.++++++.+.......+... .......+........ ......+++|++|+++
T Consensus 336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL----KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSC----SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred EEccCCCcccccCccCCCCceEEECCCCccccchhhhhccc----CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 345566666666665533222111111 1111111111100100 1112336789999999
Q ss_pred CCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCccc
Q 038396 274 SNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGA 352 (456)
Q Consensus 274 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 352 (456)
+|.+++ .++..+..+++|++|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|+.|++++|+++..
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence 999988 4555688889999999999999877776554 69999999999999 7787777999999999999999954
Q ss_pred CCC-CCCCCCCCCcccCCCCCCCCCCC
Q 038396 353 IPL-GKQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 353 ~p~-~~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
.+. ...++.++.+++.+|++.|+|+.
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 333 35677888999999999998864
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.5e-37 Score=308.44 Aligned_cols=355 Identities=19% Similarity=0.246 Sum_probs=218.2
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP 83 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 83 (456)
.||+.+ .++|++|||++|+++. +.......+++|++|++++|++++..|++|.++++|++|++++|.+++..|
T Consensus 19 ~ip~~~----~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 19 SIPSGL----TAAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSCC----CTTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred cccccC----CCCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 456544 3578888888888762 111111236778888888888887777778888888888888888876655
Q ss_pred hhhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccCCc-CcccCCccccCCCCCcEEeCcCCcCCcCCCccccC
Q 038396 84 QCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNL-FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161 (456)
Q Consensus 84 ~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 161 (456)
..+..+. +|++|++++|.+++. .|..|..+++|++|++++|+ +....+..|.++++|++|++++|.+++..|..++.
T Consensus 92 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 92 SWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 5677777 788888888888753 45677778888888888887 44344457777888888888888877766666654
Q ss_pred ------------------------CCCCCEEEccCCcccccCCCCCC-ccCC----------------------------
Q 038396 162 ------------------------IPNLNVLILRSNKFYGIIKEPRT-DCRF---------------------------- 188 (456)
Q Consensus 162 ------------------------l~~L~~L~L~~n~l~~~~~~~~~-~~~l---------------------------- 188 (456)
+++|++|++++|++++....+.. ...+
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 45566666666666553110000 0011
Q ss_pred -----------------------------------------------------------CCccEEecccccCcCCCChhh
Q 038396 189 -----------------------------------------------------------SKLHIIDLSNNRFTGKLPSKS 209 (456)
Q Consensus 189 -----------------------------------------------------------~~L~~L~ls~n~l~~~~~~~~ 209 (456)
++|+.|++++|.+. .+|...
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 22333444444443 344443
Q ss_pred hhCccccccccccCcccccccc---CCCCCccccccccccceeEeeccCcc-----cccccccccccEEEccCCCCCccC
Q 038396 210 FLCLDAMKIVNTSQLRYLQDVI---SPYGQVSTDLISTYDYSLIMNSKGRM-----MTYNKIPDILTGIILSSNRFDRVI 281 (456)
Q Consensus 210 ~~~l~~l~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~~ 281 (456)
+..+++|+.+++++|.+..... ..+.. ..... .+....+... ......+++|++|++++|+++. +
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----l~~L~--~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 402 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGA----WPSLQ--TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 402 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTS----STTCC--EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-C
T ss_pred HhcCccccEEEccCCccccccccchhhhhc----cccCc--EEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-C
Confidence 4445555555555554422110 00000 00000 0111111100 0112335667788888887775 5
Q ss_pred chhhhccCCCCeEeCCCccccccCCccc------------------cCCCCCCeeeCCCCcccccCchhhhcCCCCCEEe
Q 038396 282 PTSIANLKGLQVLNLDNNNLQGHIPSCL------------------GNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFD 343 (456)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 343 (456)
|..+..+++|++|++++|++++ +|..+ ..+++|++|+|++|+++ .+|. ...+++|++|+
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~ 479 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMK 479 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEE
T ss_pred ChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEe
Confidence 5566667777777777777652 22221 25677888888888887 5665 45788888888
Q ss_pred ccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCC
Q 038396 344 VSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 344 ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~ 377 (456)
+++|++++.+|.. ..++.++.+++.+|++.|+|+
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8888888777653 567788888899999988876
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-36 Score=292.03 Aligned_cols=309 Identities=17% Similarity=0.208 Sum_probs=240.7
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCC----CCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPV----PPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF 89 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~----~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 89 (456)
++++++|++++|.++ .+|. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+
T Consensus 44 l~~l~~l~l~~~~l~-------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GCCCSEEEEESCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCceEEEecCCchh-------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 577888888888876 3443 26788888888888887777788888888888888888886666677777
Q ss_pred CCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396 90 SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169 (456)
Q Consensus 90 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 169 (456)
+ +|++|++++|.++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++. .++.+++|+.|+
T Consensus 117 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 117 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred C-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 7 788888888888855555567888888888888888877777788888888888888888754 255677888888
Q ss_pred ccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249 (456)
Q Consensus 170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (456)
+++|.+.+. ...++|++|++++|.+. .+|.. ...+|+.++++++.+...
T Consensus 193 l~~n~l~~~-------~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~-------------------- 241 (390)
T 3o6n_A 193 VSYNLLSTL-------AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT-------------------- 241 (390)
T ss_dssp CCSSCCSEE-------ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--------------------
T ss_pred ccccccccc-------CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--------------------
Confidence 888887755 23457888888888877 44432 235677777777654211
Q ss_pred EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI 329 (456)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 329 (456)
.....++.|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|++|++++|+++ .+
T Consensus 242 ---------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~ 310 (390)
T 3o6n_A 242 ---------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 310 (390)
T ss_dssp ---------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred ---------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ec
Confidence 112235679999999999999888899999999999999999984 5666788999999999999998 67
Q ss_pred chhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396 330 PQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 330 ~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 377 (456)
|..+..+++|+.|++++|+++.. | ...++.++.+++.+|++.|.+.
T Consensus 311 ~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHH
T ss_pred CccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchhH
Confidence 77788899999999999999855 3 3567788899999999988653
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=298.06 Aligned_cols=111 Identities=25% Similarity=0.348 Sum_probs=77.9
Q ss_pred cccccEEEccCCCCCc-cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396 264 PDILTGIILSSNRFDR-VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 342 (456)
+++|++|++++|.+++ .++..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 4456666666666655 2223355566666666666666555554443 67888888888887 677777789999999
Q ss_pred eccCCcCcccCCC--CCCCCCCCCcccCCCCCCCCCCC
Q 038396 343 DVSDNYLTGAIPL--GKQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 343 ~ls~N~l~~~~p~--~~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
++++|+++. +|. ...++.++.+++.+|++.|+|+.
T Consensus 450 ~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 450 NVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999984 554 34577788888999999998764
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.3e-35 Score=300.95 Aligned_cols=332 Identities=20% Similarity=0.181 Sum_probs=259.6
Q ss_pred ccCCChhhhhhcCCCCCEEEccCCCCCCCC--cC----------------cc-----CCC-------CCCCCCcEEEccC
Q 038396 2 HGKIPKWLLDPSMQYLNALNLSHNLLTSSN--NL----------------QG-----PLP-------VPPPETILYLVSN 51 (456)
Q Consensus 2 ~g~ip~~~~~~~l~~L~~L~Ls~N~l~~~~--~l----------------~~-----~~~-------~~~~~L~~L~ls~ 51 (456)
++..|..|.. +++|++|++++|+++... .+ .+ .+| ..+++|+.|++++
T Consensus 261 ~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 261 NVVGNDSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CEECTTTTTT--CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CccCcccccC--cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 3445677878 888999999988876110 00 00 122 2367888888888
Q ss_pred CccccccchhhhcCCCCCeeecccCcCcc-ccC-hhhhhCC-CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCc
Q 038396 52 NSLTGEIPSWICNLNTVKNLVLSHNNLSG-VLP-QCLGNFS-DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ 128 (456)
Q Consensus 52 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~~~l~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 128 (456)
|.+++..+..|.++++|++|++++|.+.. .++ ..+..+. +.|++|++++|++++..|..|..+++|++|++++|+++
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 88888778888888888888888887532 222 2233221 26899999999999888889999999999999999998
Q ss_pred ccCC-ccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396 129 GRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS 207 (456)
Q Consensus 129 ~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 207 (456)
+.+| ..|.++++|++|++++|.+++..+..|..+++|++|++++|.+......+..+..+++|++|++++|.++ .++.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~ 497 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NIND 497 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCCh
Confidence 7555 6888999999999999999888888899999999999999988743222333378899999999999998 6777
Q ss_pred hhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhc
Q 038396 208 KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIAN 287 (456)
Q Consensus 208 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 287 (456)
..+..+++|+.+++++|.+.......+.. ........++.|++|++++|.++.+++..|.+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHNNLARLWKHANPG-------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCGGGGSTTSTT-------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhccccccCEEeCCCCCccccchhhccC-------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 77899999999999998763322111110 00011223577999999999999877778999
Q ss_pred cCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhh-cCCCCCEEeccCCcCcccCCC
Q 038396 288 LKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLV-EFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 288 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~ls~N~l~~~~p~ 355 (456)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+. .+++|+.|++++|++.|.++.
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999977777889999999999999999988877777 789999999999999999985
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=304.87 Aligned_cols=192 Identities=19% Similarity=0.205 Sum_probs=137.3
Q ss_pred cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccccccc-CCCCCcc
Q 038396 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVI-SPYGQVS 238 (456)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~ 238 (456)
..+++|++|++++|.+++....+..+..+++|++|++++|.+. .++.. +..+++|+.++++++.+..... ..+...
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l- 420 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 420 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC-
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcC-
Confidence 3467788888888887755311112256778888888888877 44444 7777788888887766533211 011110
Q ss_pred ccccccccceeEeeccCc---ccccccccccccEEEccCCCCC-ccCchhhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396 239 TDLISTYDYSLIMNSKGR---MMTYNKIPDILTGIILSSNRFD-RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314 (456)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 314 (456)
.... .+....... .......+++|++|++++|.+. +..|..+..+++|+.|++++|++++..|..|..+++
T Consensus 421 ---~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 421 ---RNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp ---TTCC--EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ---CCCC--EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 0000 111111111 1112233678999999999997 467888999999999999999999888999999999
Q ss_pred CCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCC
Q 038396 315 LESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQF 359 (456)
Q Consensus 315 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 359 (456)
|++|++++|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999888888999999999999999999999975433
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7e-35 Score=281.50 Aligned_cols=318 Identities=21% Similarity=0.206 Sum_probs=259.9
Q ss_pred CCChh-hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 4 KIPKW-LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 4 ~ip~~-~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
.+|+. |.. +++|++|+|++|.++. +.......+++|++|++++|.+++..|..|.++++|++|++++|.++ .+
T Consensus 59 ~l~~~~~~~--l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l 132 (390)
T 3o6n_A 59 KLPAALLDS--FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132 (390)
T ss_dssp EECTHHHHH--CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred hCChhHhcc--cccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cC
Confidence 46665 567 9999999999999872 22122234889999999999999888899999999999999999999 55
Q ss_pred Chh-hhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccC
Q 038396 83 PQC-LGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 161 (456)
Q Consensus 83 ~~~-~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 161 (456)
|.. +..++ +|++|++++|.+++..+..|..+++|++|++++|++++. .+..+++|++|++++|.+++ +..
T Consensus 133 ~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~ 203 (390)
T 3o6n_A 133 PRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAI 203 (390)
T ss_dssp CTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EEC
T ss_pred CHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCC
Confidence 554 57787 899999999999988888899999999999999999854 36678999999999999874 344
Q ss_pred CCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccc
Q 038396 162 IPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDL 241 (456)
Q Consensus 162 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~ 241 (456)
.++|++|++++|.+...... ..++|+.|++++|.+++ . ..+..+++|+.++++++.+.......+
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~------- 268 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEKIMYHPF------- 268 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC-----CCSSCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCEEESGGG-------
T ss_pred CCcceEEECCCCeeeecccc-----ccccccEEECCCCCCcc-c--HHHcCCCCccEEECCCCcCCCcChhHc-------
Confidence 56899999999999877432 34799999999999984 3 458889999999999987633211111
Q ss_pred cccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCC
Q 038396 242 ISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 321 (456)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 321 (456)
..+++|++|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 269 --------------------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 269 --------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326 (390)
T ss_dssp --------------------TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred --------------------cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence 125679999999999998 4556788999999999999999 677778999999999999
Q ss_pred CCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396 322 NNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 322 ~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 377 (456)
+|+++.. + +..+++|+.|++++|++++.... ..+..+....+.+++..|.++
T Consensus 327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 9999854 3 67889999999999999986543 344556666677888778754
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-35 Score=301.84 Aligned_cols=308 Identities=17% Similarity=0.208 Sum_probs=193.4
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCC----CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVP----PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNF 89 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~----~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 89 (456)
+++++.|++++|.++ .+|.. +++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|..|+.+
T Consensus 50 l~~l~~l~l~~~~l~-------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCCCC-------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 456666666666654 33321 5666666666666666555666666666666666666665555555666
Q ss_pred CCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396 90 SDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169 (456)
Q Consensus 90 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 169 (456)
+ +|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.. ++.+++|+.|+
T Consensus 123 ~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 123 P-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp T-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred C-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 5 6666666666666554455566666666666666666666666666666666666666666432 34455666666
Q ss_pred ccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249 (456)
Q Consensus 170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (456)
+++|.+.+. ...++|+.|++++|.+. .++... ..+|+.|++++|.+..
T Consensus 199 l~~n~l~~l-------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--------------------- 246 (597)
T 3oja_B 199 VSYNLLSTL-------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--------------------- 246 (597)
T ss_dssp CCSSCCSEE-------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC---------------------
T ss_pred cccCccccc-------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC---------------------
Confidence 666665543 22345566666666554 222211 1345555555544311
Q ss_pred EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI 329 (456)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 329 (456)
......++.|+.|+|++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+
T Consensus 247 --------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i 316 (597)
T 3oja_B 247 --------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HV 316 (597)
T ss_dssp --------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CC
T ss_pred --------ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-cc
Confidence 0111224568888888888877777777778888888888888874 4555667778888888888877 56
Q ss_pred chhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCC
Q 038396 330 PQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGR 376 (456)
Q Consensus 330 ~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 376 (456)
|..+..+++|+.|++++|.+++.. ...++.+..+++.+|++.|.+
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 666777788888888888877542 234566777777777776654
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=291.97 Aligned_cols=329 Identities=20% Similarity=0.193 Sum_probs=207.2
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP 83 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 83 (456)
.||+.+ .++|++|+|++|.++.. .......+++|++|++++|++++..|.+|.++++|++|++++|+++ .+|
T Consensus 14 ~ip~~~----~~~L~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 14 HVPKDL----SQKTTILNISQNYISEL---WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp SCCCSC----CTTCSEEECCSSCCCCC---CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred cccccc----cccccEEECCCCccccc---ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence 356544 24677777777777621 0000122667777777777777666777777777777777777777 555
Q ss_pred hhhhhCCCCCcEEEccCCccce-eCCccccCCCCccEEeccCCcCcccCCccccCCCCC--cEEeCcCCcC--CcCCCcc
Q 038396 84 QCLGNFSDELSVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL--EFLDLGNNQI--SDTFPSW 158 (456)
Q Consensus 84 ~~~~~l~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~~L~Ls~n~i--~~~~~~~ 158 (456)
.. .+. +|++|++++|.+++ ..|..|+.+++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..
T Consensus 86 ~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 86 CH--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CC--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred cc--ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence 54 555 67777777777775 356677777777777777777653 223334444 4444444444 2233322
Q ss_pred ccCCC---------------------------------------------------------------------------
Q 038396 159 LGTIP--------------------------------------------------------------------------- 163 (456)
Q Consensus 159 ~~~l~--------------------------------------------------------------------------- 163 (456)
+..+.
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 22211
Q ss_pred --------CCCEEEccCCcccccCCCCC--------------------------------------------------C-
Q 038396 164 --------NLNVLILRSNKFYGIIKEPR--------------------------------------------------T- 184 (456)
Q Consensus 164 --------~L~~L~L~~n~l~~~~~~~~--------------------------------------------------~- 184 (456)
+|++|++++|++.+..+..+ .
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc
Confidence 33444444444332222111 0
Q ss_pred ccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccc--cccCCCCCccccccccccceeEeeccC--ccccc
Q 038396 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQ--DVISPYGQVSTDLISTYDYSLIMNSKG--RMMTY 260 (456)
Q Consensus 185 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 260 (456)
...+++|++|++++|.+++.+| ..+..+++|+.+++++|.+.. .....+.. ........+...... .....
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~----l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQ----MKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----CTTCCEEECCSSCCBCCGGGCS
T ss_pred hhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhh----CCCCCEEECCCCcCCcccccch
Confidence 1466788888888888885555 346778888888888876632 10000110 001111111111000 11111
Q ss_pred ccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh-hhcCCCC
Q 038396 261 NKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ-LVEFTFL 339 (456)
Q Consensus 261 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L 339 (456)
...++.|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 23367899999999999887666554 79999999999999 88888889999999999999999 56654 8899999
Q ss_pred CEEeccCCcCcccCCC
Q 038396 340 EFFDVSDNYLTGAIPL 355 (456)
Q Consensus 340 ~~L~ls~N~l~~~~p~ 355 (456)
++|++++|+++|.++.
T Consensus 471 ~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 471 QKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CEEECCSSCBCCCHHH
T ss_pred cEEECcCCCCcccCCc
Confidence 9999999999998874
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.6e-34 Score=269.22 Aligned_cols=306 Identities=20% Similarity=0.283 Sum_probs=253.5
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN 88 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 88 (456)
+.. +++|++|++++|.++....+ ..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 40 ~~~--l~~L~~L~l~~~~i~~~~~~-----~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~ 108 (347)
T 4fmz_A 40 QEE--LESITKLVVAGEKVASIQGI-----EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQN 108 (347)
T ss_dssp HHH--HTTCSEEECCSSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTT
T ss_pred chh--cccccEEEEeCCccccchhh-----hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcC
Confidence 446 88999999999999733222 228899999999999995443 9999999999999999984 44 5888
Q ss_pred CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396 89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168 (456)
Q Consensus 89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 168 (456)
++ +|++|++++|.+++..+ +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 109 l~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 109 LT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp CT-TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CC-cCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 88 89999999999985533 889999999999999766444 448999999999999999985543 8899999999
Q ss_pred EccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccce
Q 038396 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248 (456)
Q Consensus 169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (456)
++++|.+.+..+ + ..+++|+.|++++|.++ .++. +..+++|+.++++++.+.....
T Consensus 183 ~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~----------------- 238 (347)
T 4fmz_A 183 SLNYNQIEDISP--L--ASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP----------------- 238 (347)
T ss_dssp ECTTSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG-----------------
T ss_pred EccCCccccccc--c--cCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc-----------------
Confidence 999999987644 3 77899999999999998 4443 7888999999999876522110
Q ss_pred eEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccccc
Q 038396 249 LIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ 328 (456)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 328 (456)
...+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 239 ------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 239 ------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp ------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred ------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence 12256799999999999884 4688999999999999999854 4688999999999999999988
Q ss_pred CchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCC
Q 038396 329 IPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSG 372 (456)
Q Consensus 329 ~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~ 372 (456)
.|..+..+++|++|++++|++++..| ...++.++.+++.+|+.
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred ChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 88999999999999999999998777 55678888888888863
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=290.09 Aligned_cols=318 Identities=23% Similarity=0.223 Sum_probs=221.2
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+...+++++++|.+++ +|..+. ++|++|++++|.+++..|..|..++ +|++|++++|.+++..|..|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 4456899999999995 676554 8999999999999977778899998 89999999999999989999999999999
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCCCCCCccCCCCc--cEEecc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL--HIIDLS 197 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L--~~L~ls 197 (456)
++++|+++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|++.+. .+ ..+++| ++|+++
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~--~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL--LPVAHLHLSCILLD 177 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT--GGGTTSCEEEEEEE
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch--hhhhhceeeEEEee
Confidence 99999999 55655 899999999999999864 468999999999999999999763 33 555666 999999
Q ss_pred cccC--cCCCChh-------------------------hhhCcccccccc------------------------------
Q 038396 198 NNRF--TGKLPSK-------------------------SFLCLDAMKIVN------------------------------ 220 (456)
Q Consensus 198 ~n~l--~~~~~~~-------------------------~~~~l~~l~~l~------------------------------ 220 (456)
+|.+ ++..|.. .+..+.+|+.++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9988 5443322 111233333333
Q ss_pred -------------------------ccCccccccccCCC-----CCccc-----------ccc---------ccccceeE
Q 038396 221 -------------------------TSQLRYLQDVISPY-----GQVST-----------DLI---------STYDYSLI 250 (456)
Q Consensus 221 -------------------------l~~~~~~~~~~~~~-----~~~~~-----------~~~---------~~~~~~~~ 250 (456)
++++.+.......+ ..... ..+ ........
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 33333211111111 00000 000 00011122
Q ss_pred eeccCc-ccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc--CCccccCCCCCCeeeCCCCcccc
Q 038396 251 MNSKGR-MMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH--IPSCLGNLTNLESLDLSNNRFSG 327 (456)
Q Consensus 251 ~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~ 327 (456)
...... ...+...+++|++|++++|.+++..|..+..+++|+.|++++|++++. .|..+..+++|++|++++|++++
T Consensus 338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 222211 111124467788888888888887777888888888888888888753 34567788888888888888886
Q ss_pred cCch-hhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCC
Q 038396 328 QIPQ-QLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNS 371 (456)
Q Consensus 328 ~~~~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~ 371 (456)
.+|. .+..+++|++|++++|.+++.+|.... +.++.+++.+|.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~ 461 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNR 461 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCc
Confidence 4554 466777888888888887776664322 456666666664
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-34 Score=291.64 Aligned_cols=319 Identities=21% Similarity=0.189 Sum_probs=262.7
Q ss_pred CCChh-hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCcccc
Q 038396 4 KIPKW-LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVL 82 (456)
Q Consensus 4 ~ip~~-~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 82 (456)
.+|+. |.. +++|++|+|++|.|+. +.......+++|+.|++++|.+++..|..|.++++|++|+|++|.+++..
T Consensus 65 ~lp~~~~~~--l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 65 KLPAALLDS--FRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp EECTHHHHH--CCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCHHHHcc--CCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 45654 566 9999999999999872 21112234889999999999999988889999999999999999999544
Q ss_pred ChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCC
Q 038396 83 PQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTI 162 (456)
Q Consensus 83 ~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l 162 (456)
+..|..++ +|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+++ +...
T Consensus 140 ~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~ 210 (597)
T 3oja_B 140 RGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIP 210 (597)
T ss_dssp TTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECC
T ss_pred HHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCC
Confidence 44567887 8999999999999988989999999999999999999642 5678899999999999874 3456
Q ss_pred CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396 163 PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI 242 (456)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 242 (456)
++|+.|++++|.+..+.... .++|+.|++++|.+++. ..+..+++|+.|++++|.+.......+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-------- 274 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-------- 274 (597)
T ss_dssp TTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG--------
T ss_pred chhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh--------
Confidence 78999999999998775432 36899999999999852 458889999999999987633222111
Q ss_pred ccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCC
Q 038396 243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 322 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 322 (456)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++
T Consensus 275 -------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 275 -------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp -------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred -------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCC
Confidence 125779999999999998 4667788999999999999999 7788889999999999999
Q ss_pred CcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396 323 NRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 323 N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 377 (456)
|.+++. + +..+++|+.|++++|+++|.+.. ..+..+....+.+++..|+.+
T Consensus 334 N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 334 NSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 999854 3 67789999999999999987643 245566667788999899864
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7e-34 Score=268.31 Aligned_cols=285 Identities=20% Similarity=0.270 Sum_probs=202.6
Q ss_pred CCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396 16 YLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS 94 (456)
Q Consensus 16 ~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~ 94 (456)
+++.++++++.++ .+|.. .++++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..++ +|+
T Consensus 34 ~l~~l~~~~~~l~-------~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-------AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-------SCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCC
T ss_pred cCCEEECCCCCcc-------ccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCC
Confidence 6899999999886 44443 56889999999999877778899999999999999999877788888888 899
Q ss_pred EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc--CCCccccCCCCCCEEEccC
Q 038396 95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFPSWLGTIPNLNVLILRS 172 (456)
Q Consensus 95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~ 172 (456)
+|++++|.++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++. ..+..+..+ +|++|++++
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 9999999988 4554443 789999999999987766778889999999999998863 667777777 899999999
Q ss_pred CcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEee
Q 038396 173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252 (456)
Q Consensus 173 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (456)
|++++++.. . .++|++|++++|.++ .++...+..+++
T Consensus 182 n~l~~l~~~-~----~~~L~~L~l~~n~i~-~~~~~~l~~l~~------------------------------------- 218 (332)
T 2ft3_A 182 AKLTGIPKD-L----PETLNELHLDHNKIQ-AIELEDLLRYSK------------------------------------- 218 (332)
T ss_dssp SBCSSCCSS-S----CSSCSCCBCCSSCCC-CCCTTSSTTCTT-------------------------------------
T ss_pred CCCCccCcc-c----cCCCCEEECCCCcCC-ccCHHHhcCCCC-------------------------------------
Confidence 998875432 2 368889999999888 444333444443
Q ss_pred ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396 253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ 332 (456)
Q Consensus 253 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 332 (456)
|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 219 --------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 219 --------------LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp --------------CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred --------------CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 556666666666655556666666777777777666 55666666666777777777666544444
Q ss_pred hhc------CCCCCEEeccCCcCc--ccCCCC-CCCCCCCCcccCCC
Q 038396 333 LVE------FTFLEFFDVSDNYLT--GAIPLG-KQFATFDNTSFDGN 370 (456)
Q Consensus 333 l~~------l~~L~~L~ls~N~l~--~~~p~~-~~~~~l~~~~~~~n 370 (456)
+.. .+.|+.|++++|++. +..|.. ..++.++.+.+.+|
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 433 245666677776665 222221 23444444445444
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.2e-35 Score=271.62 Aligned_cols=249 Identities=27% Similarity=0.376 Sum_probs=201.8
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCC---CCCCcEEEccC-CccccccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVP---PPETILYLVSN-NSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS 90 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~---~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 90 (456)
.++++|+|++|.++... .+|.. +++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~----~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY----PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCE----ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCc----ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 57999999999986200 34432 78999999995 999999999999999999999999999999999999998
Q ss_pred CCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCC-CCcEEeCcCCcCCcCCCccccCCCCCCEEE
Q 038396 91 DELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS-KLEFLDLGNNQISDTFPSWLGTIPNLNVLI 169 (456)
Q Consensus 91 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 169 (456)
+|++|++++|.+++.+|..|..+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..++ |++|+
T Consensus 126 -~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 -TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp -TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred -CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 899999999999999999999999999999999999999999999998 999999999999999999999887 99999
Q ss_pred ccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396 170 LRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249 (456)
Q Consensus 170 L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (456)
+++|++++..+..+ ..+++|+.|++++|.+++.++
T Consensus 204 Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~------------------------------------------- 238 (313)
T 1ogq_A 204 LSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLG------------------------------------------- 238 (313)
T ss_dssp CCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGG-------------------------------------------
T ss_pred CcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecC-------------------------------------------
Confidence 99999988766555 677888888888887763222
Q ss_pred EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI 329 (456)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 329 (456)
.+..+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+
T Consensus 239 ----------------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 239 ----------------------------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp ----------------------------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred ----------------------------------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 1334455666666666666666666666666666666666666665
Q ss_pred chhhhcCCCCCEEeccCCcC
Q 038396 330 PQQLVEFTFLEFFDVSDNYL 349 (456)
Q Consensus 330 ~~~l~~l~~L~~L~ls~N~l 349 (456)
|.. ..+++|+.+++++|+.
T Consensus 285 p~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSE
T ss_pred CCC-ccccccChHHhcCCCC
Confidence 554 5566666666666663
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.9e-33 Score=263.00 Aligned_cols=286 Identities=21% Similarity=0.232 Sum_probs=221.4
Q ss_pred CCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396 16 YLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELS 94 (456)
Q Consensus 16 ~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~ 94 (456)
+++.++++++.++ .+|.. .+.++.|++++|.+++..+..|.++++|++|++++|.+++..|..+..++ +|+
T Consensus 32 ~l~~l~~~~~~l~-------~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLE-------KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLE 103 (330)
T ss_dssp ETTEEECTTSCCC-------SCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCC
T ss_pred CCeEEEecCCCcc-------ccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCC
Confidence 7999999999987 44543 57899999999999988777899999999999999999977788999998 899
Q ss_pred EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc--CCCccccCCCCCCEEEccC
Q 038396 95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFPSWLGTIPNLNVLILRS 172 (456)
Q Consensus 95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~ 172 (456)
+|++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++. ..+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 9999999998 4555543 799999999999998878889999999999999999964 6678889999999999999
Q ss_pred CcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEee
Q 038396 173 NKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMN 252 (456)
Q Consensus 173 n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (456)
|.++.++.. ..++|++|++++|.+++ ++...+..+
T Consensus 181 n~l~~l~~~-----~~~~L~~L~l~~n~l~~-~~~~~~~~l--------------------------------------- 215 (330)
T 1xku_A 181 TNITTIPQG-----LPPSLTELHLDGNKITK-VDAASLKGL--------------------------------------- 215 (330)
T ss_dssp SCCCSCCSS-----CCTTCSEEECTTSCCCE-ECTGGGTTC---------------------------------------
T ss_pred CccccCCcc-----ccccCCEEECCCCcCCc-cCHHHhcCC---------------------------------------
Confidence 999876432 23789999999999884 332333333
Q ss_pred ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchh
Q 038396 253 SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQ 332 (456)
Q Consensus 253 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 332 (456)
++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 216 ------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 216 ------------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp ------------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred ------------CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 34777778888887777767778888888888888887 67777778888888888888887655555
Q ss_pred hhc------CCCCCEEeccCCcCccc-C-CCC-CCCCCCCCcccCCC
Q 038396 333 LVE------FTFLEFFDVSDNYLTGA-I-PLG-KQFATFDNTSFDGN 370 (456)
Q Consensus 333 l~~------l~~L~~L~ls~N~l~~~-~-p~~-~~~~~l~~~~~~~n 370 (456)
|.. .+.|+.+++++|++... + |.. ..+..++.+++.+|
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 543 36777888888887632 2 211 22344445555554
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.7e-33 Score=263.88 Aligned_cols=288 Identities=23% Similarity=0.320 Sum_probs=240.8
Q ss_pred CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396 5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ 84 (456)
Q Consensus 5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 84 (456)
+| .+.. +++|++|++++|++++... ...+++|++|++++|.+++ + +.+..+++|++|++++|.++ .++.
T Consensus 59 ~~-~~~~--~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~ 127 (347)
T 4fmz_A 59 IQ-GIEY--LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP 127 (347)
T ss_dssp CT-TGGG--CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG
T ss_pred ch-hhhh--cCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh
Confidence 44 4778 9999999999999983322 2348899999999999995 3 36999999999999999998 4444
Q ss_pred hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396 85 CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN 164 (456)
Q Consensus 85 ~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 164 (456)
+..++ +|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 128 -~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 200 (347)
T 4fmz_A 128 -LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTS 200 (347)
T ss_dssp -GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTT
T ss_pred -hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCc
Confidence 77887 89999999997664444 48999999999999999985443 8899999999999999985433 889999
Q ss_pred CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccc
Q 038396 165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244 (456)
Q Consensus 165 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (456)
|+.|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|+.++++++.+...
T Consensus 201 L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--------------- 258 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP----VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--------------- 258 (347)
T ss_dssp CCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC---------------
T ss_pred cceeecccCCCCCCch----hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC---------------
Confidence 9999999999987654 378899999999999998 5554 88899999999998765221
Q ss_pred ccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCc
Q 038396 245 YDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 324 (456)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 324 (456)
.....+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus 259 --------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 --------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp --------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred --------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 0112257799999999999985 468899999999999999998889999999999999999999
Q ss_pred ccccCchhhhcCCCCCEEeccCCcCc
Q 038396 325 FSGQIPQQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 325 l~~~~~~~l~~l~~L~~L~ls~N~l~ 350 (456)
+++..| +..+++|+.|++++|+++
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccccC--hhhhhccceeehhhhccc
Confidence 996655 889999999999999986
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-33 Score=284.83 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=170.3
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE 92 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~ 92 (456)
|+...+.|.++|.++ .+|.. .+.+++|++++|.+++..|..|.++++|++|++++|.+++..|.+|..+. +
T Consensus 4 C~~~~~c~~~~~~l~-------~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~ 75 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-------SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-S 75 (549)
T ss_dssp ECTTSEEECTTSCCS-------SCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred CCCCceEECCCCccc-------cccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-c
Confidence 566677899999987 55554 57899999999999988889999999999999999999988888899998 8
Q ss_pred CcEEEccCCccceeCCccccCCCCccEEeccCCcCccc-CCccccCCCCCcEEeCcCCc-CCcCCCccccCCCCCCEEEc
Q 038396 93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR-IPRSLVNCSKLEFLDLGNNQ-ISDTFPSWLGTIPNLNVLIL 170 (456)
Q Consensus 93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L 170 (456)
|++|++++|.+++..+..|.++++|++|++++|++++. .|..+..+++|++|++++|. +....+..++.+++|++|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 99999999999988888899999999999999999863 56789999999999999998 44444468999999999999
Q ss_pred cCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.+++..+..+ ..+++|++|++++|.+. .+|...+..+++|+.++++++.+
T Consensus 156 ~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 156 KALSLRNYQSQSL--KSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EETTCCEECTTTT--TTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC
T ss_pred cCCcccccChhhh--hccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc
Confidence 9999998877666 66777777777777765 55555555667777777766654
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.1e-33 Score=274.09 Aligned_cols=326 Identities=22% Similarity=0.313 Sum_probs=213.9
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN 88 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 88 (456)
+.. +++|++|||++|.++.... ...+++|++|++++|.+++..+ +.++++|++|++++|.+++. +. +..
T Consensus 64 ~~~--l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~ 132 (466)
T 1o6v_A 64 VEY--LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKN 132 (466)
T ss_dssp GGG--CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred hhh--hcCCCEEECCCCccCCchh-----hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcC
Confidence 555 6677777777776652211 1225667777777777664433 66677777777777776633 32 556
Q ss_pred CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396 89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168 (456)
Q Consensus 89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 168 (456)
++ +|++|++++|.+++. + .+..+++|++|+++ |.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|
T Consensus 133 l~-~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 204 (466)
T 1o6v_A 133 LT-NLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 204 (466)
T ss_dssp CT-TCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred CC-CCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEE
Confidence 65 677777777766642 2 35555555555554 233322 1267777888888888887643 346777888888
Q ss_pred EccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccce
Q 038396 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYS 248 (456)
Q Consensus 169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (456)
++++|.+.+..+ + ..+++|++|++++|.++ .++ .+..+++|+.++++++.+..... +.. ........
T Consensus 205 ~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~ 271 (466)
T 1o6v_A 205 IATNNQISDITP--L--GILTNLDELSLNGNQLK-DIG--TLASLTNLTDLDLANNQISNLAP--LSG----LTKLTELK 271 (466)
T ss_dssp ECCSSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GTT----CTTCSEEE
T ss_pred EecCCccccccc--c--cccCCCCEEECCCCCcc-cch--hhhcCCCCCEEECCCCccccchh--hhc----CCCCCEEE
Confidence 888887776643 2 55777888888888776 333 36677777777777765532211 100 00111111
Q ss_pred eEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccccc
Q 038396 249 LIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQ 328 (456)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 328 (456)
+.......... ...++.|++|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++.
T Consensus 272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 272 LGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 11110011111 2336779999999999988544 7889999999999999986655 78899999999999999864
Q ss_pred CchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCC
Q 038396 329 IPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLC 374 (456)
Q Consensus 329 ~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc 374 (456)
..+..+++|+.|++++|++++..| ...++.++.+.+.+|++..
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred --hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 468899999999999999998887 5667788888888887654
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-32 Score=280.15 Aligned_cols=342 Identities=19% Similarity=0.171 Sum_probs=249.2
Q ss_pred CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396 5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ 84 (456)
Q Consensus 5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 84 (456)
.|..|.+ +++|++|||++|+|+ .+.......+++|++|+|++|++++..+.+|.++++|++|++++|++++..+.
T Consensus 68 ~~~~f~~--l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 68 GSYSFFS--FPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp CTTTTTT--CTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CHHHHhC--CCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 3457888 999999999999997 22222334488999999999999988888899999999999999999966666
Q ss_pred hhhhCCCCCcEEEccCCcccee-CCccccCCCCccEEeccCCcCcccCCccccCC-------------------------
Q 038396 85 CLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC------------------------- 138 (456)
Q Consensus 85 ~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l------------------------- 138 (456)
.|++++ +|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+
T Consensus 143 ~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 143 PIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp CCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred hhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc
Confidence 788888 899999999999764 57888899999999999998875544332211
Q ss_pred --------------------------------------------------------------------------------
Q 038396 139 -------------------------------------------------------------------------------- 138 (456)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (456)
T Consensus 222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence
Q ss_pred --------------------------CCCcEEeCcCCcCCcCCC-------------------ccccCCCCCCEEEccCC
Q 038396 139 --------------------------SKLEFLDLGNNQISDTFP-------------------SWLGTIPNLNVLILRSN 173 (456)
Q Consensus 139 --------------------------~~L~~L~Ls~n~i~~~~~-------------------~~~~~l~~L~~L~L~~n 173 (456)
..|+.|++.+|.+....+ .....+++|+.|++++|
T Consensus 302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n 381 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 381 (635)
T ss_dssp TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence 122333333333221111 01124567788888887
Q ss_pred cccccCCC-----------------------CCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccc
Q 038396 174 KFYGIIKE-----------------------PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDV 230 (456)
Q Consensus 174 ~l~~~~~~-----------------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~ 230 (456)
.+...... ...+..+++|+.++++.+......+...+..+..++.++++.+......
T Consensus 382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 382 GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred ccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 76432110 1113567888999998888776667677888888888888877653322
Q ss_pred cCCCCCccccccccccceeEee--ccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCcc
Q 038396 231 ISPYGQVSTDLISTYDYSLIMN--SKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSC 308 (456)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 308 (456)
...+.... ......+... ...........+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..
T Consensus 462 ~~~~~~~~----~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 462 NGIFNGLS----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp TTTTTTCT----TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred ccccccch----hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 22211111 0000000000 00111222334678999999999999999999999999999999999999888999
Q ss_pred ccCCCCCCeeeCCCCcccccCchhhhcC-CCCCEEeccCCcCcccCCCC
Q 038396 309 LGNLTNLESLDLSNNRFSGQIPQQLVEF-TFLEFFDVSDNYLTGAIPLG 356 (456)
Q Consensus 309 l~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~p~~ 356 (456)
|..+++|++|+|++|+|++..|..+..+ ++|++|++++|+++|.|...
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9999999999999999999999999888 68999999999999988753
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=266.32 Aligned_cols=278 Identities=16% Similarity=0.147 Sum_probs=218.9
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDE 92 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~ 92 (456)
|+.....|+++|.++ .+|.. .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..++ +
T Consensus 30 C~~~~~c~~~~~~l~-------~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~ 101 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-------SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-S 101 (353)
T ss_dssp ECTTSEEECCSTTCS-------SCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred CCCCeEeeCCCCCcc-------cccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-C
Confidence 677777888888887 55554 56899999999999877666888999999999999999877777788887 8
Q ss_pred CcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCC-ccccCCCCCcEEeCcCC-cCCcCCCccccCCCCCCEEEc
Q 038396 93 LSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNN-QISDTFPSWLGTIPNLNVLIL 170 (456)
Q Consensus 93 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L 170 (456)
|++|++++|.+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .++...+..++.+++|++|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 9999999999986655568888999999999999885444 47888899999999988 477666778888899999999
Q ss_pred cCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeE
Q 038396 171 RSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLI 250 (456)
Q Consensus 171 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (456)
++|.+.+..+..+ ..+++|++|++++|.++ .+|...+..
T Consensus 182 ~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~~~~-------------------------------------- 220 (353)
T 2z80_A 182 DASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIFVDV-------------------------------------- 220 (353)
T ss_dssp EETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHHHHH--------------------------------------
T ss_pred CCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhhhhh--------------------------------------
Confidence 9999888766666 77888999999998886 555433322
Q ss_pred eeccCcccccccccccccEEEccCCCCCccCchhh---hccCCCCeEeCCCccccc----cCCccccCCCCCCeeeCCCC
Q 038396 251 MNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSI---ANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNN 323 (456)
Q Consensus 251 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~N 323 (456)
+++|++|++++|.+++..+..+ .....++.++++++.+++ .+|..+..+++|++|++++|
T Consensus 221 -------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 221 -------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp -------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred -------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 2447777777777776544433 235667788888887764 46778889999999999999
Q ss_pred cccccCchh-hhcCCCCCEEeccCCcCcccCC
Q 038396 324 RFSGQIPQQ-LVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 324 ~l~~~~~~~-l~~l~~L~~L~ls~N~l~~~~p 354 (456)
+++ .+|.. +..+++|++|++++|+++|.+|
T Consensus 288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999 55555 5889999999999999998887
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.1e-32 Score=255.54 Aligned_cols=267 Identities=21% Similarity=0.250 Sum_probs=219.9
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
.+++.++++++.++ .+|..+ .++|++|++++|.+++..|..+..++ +|++|++++|.+++..|..|..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 36889999999888 556555 36889999999999866677888888 899999999999988888899999999999
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccc--cCCCCCCccCCCCccEEecccc
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYG--IIKEPRTDCRFSKLHIIDLSNN 199 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~ls~n 199 (456)
+++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+ ..+ +|++|++++|
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEA 182 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCC
Confidence 9999988 5555544 789999999999987766778889999999999998864 433333 555 8889999998
Q ss_pred cCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCc
Q 038396 200 RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDR 279 (456)
Q Consensus 200 ~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 279 (456)
.++ .+|... ++.|++|++++|.+++
T Consensus 183 ~l~-~l~~~~------------------------------------------------------~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 183 KLT-GIPKDL------------------------------------------------------PETLNELHLDHNKIQA 207 (332)
T ss_dssp BCS-SCCSSS------------------------------------------------------CSSCSCCBCCSSCCCC
T ss_pred CCC-ccCccc------------------------------------------------------cCCCCEEECCCCcCCc
Confidence 887 455321 2358899999999999
Q ss_pred cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC--
Q 038396 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK-- 357 (456)
Q Consensus 280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~-- 357 (456)
..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+...
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 88889999999999999999999888889999999999999999999 788889999999999999999996654321
Q ss_pred -----CCCCCCCcccCCCCCCC
Q 038396 358 -----QFATFDNTSFDGNSGLC 374 (456)
Q Consensus 358 -----~~~~l~~~~~~~n~~lc 374 (456)
.+..+..+++.+||..+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCG
T ss_pred cccccccccccceEeecCcccc
Confidence 14556778899999764
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7.8e-32 Score=254.13 Aligned_cols=270 Identities=21% Similarity=0.272 Sum_probs=225.8
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
.+++.++++++.++ .+|..+. +.|++|++++|.+++..+..+..++ +|++|++++|.+++..|..|..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47899999999988 5565443 6899999999999966666788888 899999999999988889999999999999
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
+++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.........+..+++|++|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 9999998 5565554 789999999999998777788999999999999999865222222337889999999999988
Q ss_pred cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281 (456)
Q Consensus 202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 281 (456)
+ .+|... +++|++|++++|.+++..
T Consensus 184 ~-~l~~~~------------------------------------------------------~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 184 T-TIPQGL------------------------------------------------------PPSLTELHLDGNKITKVD 208 (330)
T ss_dssp C-SCCSSC------------------------------------------------------CTTCSEEECTTSCCCEEC
T ss_pred c-cCCccc------------------------------------------------------cccCCEEECCCCcCCccC
Confidence 7 455320 245999999999999988
Q ss_pred chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCC----
Q 038396 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGK---- 357 (456)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~---- 357 (456)
+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+...
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 999999999999999999999888889999999999999999999 788889999999999999999996554321
Q ss_pred ---CCCCCCCcccCCCCCCC
Q 038396 358 ---QFATFDNTSFDGNSGLC 374 (456)
Q Consensus 358 ---~~~~l~~~~~~~n~~lc 374 (456)
....+..+++.+||..+
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCG
T ss_pred cccccccccceEeecCcccc
Confidence 23556777889998765
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-31 Score=264.49 Aligned_cols=322 Identities=23% Similarity=0.268 Sum_probs=246.7
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
+++|++|++++|.+++...+ ..+++|++|++++|.+++..+ +.++++|++|++++|.+++. +. +..++ +|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~-----~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~-~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLT-NL 114 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCT-TC
T ss_pred hccccEEecCCCCCccCcch-----hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCC-CC
Confidence 67899999999998732211 228899999999999996554 99999999999999999854 44 88888 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
++|++++|.+++..+ +..+++|++|++++|++++ ++ .+..+++|++|+++ |.+.+.. .++.+++|++|++++|
T Consensus 115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 999999999996543 8999999999999999985 44 58999999999997 4555332 4889999999999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
.+.+.. . +..+++|++|++++|.+++..+ +..+++|+.++++++.+.... .+. .........+....
T Consensus 188 ~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~l~----~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 188 KVSDIS--V--LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLA----SLTNLTDLDLANNQ 254 (466)
T ss_dssp CCCCCG--G--GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGG----GCTTCSEEECCSSC
T ss_pred cCCCCh--h--hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch--hhh----cCCCCCEEECCCCc
Confidence 988763 2 3788999999999999985444 677899999999988763210 010 01111111111111
Q ss_pred cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333 (456)
Q Consensus 254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l 333 (456)
...... ...+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +
T Consensus 255 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 255 ISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred cccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence 111111 2346779999999999988544 7888999999999999986544 7889999999999999986655 7
Q ss_pred hcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCC
Q 038396 334 VEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGL 373 (456)
Q Consensus 334 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~l 373 (456)
..+++|+.|++++|++++. +....++.++.+++.+|...
T Consensus 328 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred ccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccC
Confidence 7899999999999999875 44456777888888888653
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-31 Score=260.25 Aligned_cols=302 Identities=13% Similarity=0.065 Sum_probs=180.3
Q ss_pred CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396 5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ 84 (456)
Q Consensus 5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 84 (456)
.+..+.+ +++|++|++++|.+++...+ ..+++|++|++++|.+++. | +..+++|++|++++|.+++ ++
T Consensus 34 ~~~~~~~--l~~L~~L~Ls~n~l~~~~~l-----~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~- 101 (457)
T 3bz5_A 34 DTISEEQ--LATLTSLDCHNSSITDMTGI-----EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD- 101 (457)
T ss_dssp SEEEHHH--HTTCCEEECCSSCCCCCTTG-----GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC-
T ss_pred cccChhH--cCCCCEEEccCCCcccChhh-----cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee-
Confidence 3445666 77788888888777622111 1266777777777777753 3 6677777777777777774 33
Q ss_pred hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396 85 CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN 164 (456)
Q Consensus 85 ~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 164 (456)
+..++ +|++|++++|.+++. + +..+++|++|++++|++++. + +..+++|++|++++|...+.+ .++.+++
T Consensus 102 -~~~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 -VTPLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp -CTTCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred -cCCCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 56666 677777777777753 3 66777777777777777753 2 566666677777666433333 3556666
Q ss_pred CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccc
Q 038396 165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244 (456)
Q Consensus 165 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (456)
|++|++++|++++++ + ..+++|+.|++++|.+++ ++ +..+++|+.+++++|.+.... +... ...
T Consensus 172 L~~L~ls~n~l~~l~---l--~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l----~~L 235 (457)
T 3bz5_A 172 LTTLDCSFNKITELD---V--SQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEID---VTPL----TQL 235 (457)
T ss_dssp CCEEECCSSCCCCCC---C--TTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC---CTTC----TTC
T ss_pred CCEEECCCCccceec---c--ccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccccC---cccc----CCC
Confidence 666666666666542 2 455666666666666653 22 455566666666655442210 1000 000
Q ss_pred ccceeEeeccCcccccccccc----------cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCc-------
Q 038396 245 YDYSLIMNSKGRMMTYNKIPD----------ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS------- 307 (456)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~----------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~------- 307 (456)
.. +....+.........++ .|+.|++++|.+.+..| +..+++|+.|++++|...+.+|.
T Consensus 236 ~~--L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 236 TY--FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp SE--EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred CE--EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 00 00000000000001112 34555555555554444 45678888888888876555443
Q ss_pred -cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396 308 -CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 308 -~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 351 (456)
.+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 255667888888888888863 3 7788889999999998886
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=2.3e-31 Score=248.22 Aligned_cols=251 Identities=24% Similarity=0.305 Sum_probs=177.9
Q ss_pred CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccc--cChhhhhCCCCC
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV--LPQCLGNFSDEL 93 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~~L 93 (456)
-+.++++++.++ .+|.. .+++++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+. +|
T Consensus 9 ~~~l~c~~~~l~-------~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L 80 (306)
T 2z66_A 9 GTEIRCNSKGLT-------SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SL 80 (306)
T ss_dssp TTEEECCSSCCS-------SCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CC
T ss_pred CCEEEcCCCCcc-------cCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-cc
Confidence 467888888887 45544 56889999999999866556688899999999999988732 356677777 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCC-ccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS 172 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 172 (456)
++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 99999999888 456668888888888888888885544 5678888888888888888777777777778888888888
Q ss_pred Ccccc-cCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396 173 NKFYG-IIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM 251 (456)
Q Consensus 173 n~l~~-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (456)
|.+.+ ..+..+ ..+++|++|++++|.++
T Consensus 160 n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~------------------------------------------------- 188 (306)
T 2z66_A 160 NSFQENFLPDIF--TELRNLTFLDLSQCQLE------------------------------------------------- 188 (306)
T ss_dssp CEEGGGEECSCC--TTCTTCCEEECTTSCCC-------------------------------------------------
T ss_pred CccccccchhHH--hhCcCCCEEECCCCCcC-------------------------------------------------
Confidence 87765 333333 44555555555555554
Q ss_pred eccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCch
Q 038396 252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331 (456)
Q Consensus 252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 331 (456)
+..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 189 ---------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 189 ---------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp ---------------------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred ---------------------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 44445555666666666666666655555566666666666666666666666
Q ss_pred hhhcCC-CCCEEeccCCcCcccCC
Q 038396 332 QLVEFT-FLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 332 ~l~~l~-~L~~L~ls~N~l~~~~p 354 (456)
.+..++ +|++|++++|+++|.++
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECSGG
T ss_pred HHHhhhccCCEEEccCCCeecccC
Confidence 666653 66677777776666554
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=8.1e-31 Score=257.89 Aligned_cols=253 Identities=21% Similarity=0.213 Sum_probs=202.5
Q ss_pred CCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396 43 ETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122 (456)
Q Consensus 43 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 122 (456)
....++.++..++ .+|..+. +++++|+|++|.+++..+..|..++ +|++|++++|.+++..+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3467777777777 4555443 5788888888888877777777777 7888888888888777788888888888888
Q ss_pred cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC-CcccccCCCCCCccCCCCccEEecccccC
Q 038396 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS-NKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++ |.+..+.+..+ ..+++|++|++++|.+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCTTCCEEECTTSCC
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--cCCCCCCEEECCCCcc
Confidence 88888866666788888888888888888866666788888888888887 45555544444 6788888888888888
Q ss_pred cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281 (456)
Q Consensus 202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 281 (456)
+ .+|. +. .+++|++|+|++|.+++..
T Consensus 209 ~-~~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 209 K-DMPN--LT---------------------------------------------------PLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp S-SCCC--CT---------------------------------------------------TCTTCCEEECTTSCCSEEC
T ss_pred c-cccc--cc---------------------------------------------------ccccccEEECcCCcCcccC
Confidence 7 3431 10 0345889999999999988
Q ss_pred chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999988899999999999999999999977777888999999999999999887764
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=1.3e-30 Score=255.45 Aligned_cols=190 Identities=26% Similarity=0.363 Sum_probs=142.9
Q ss_pred ccCCChhhhhhcCCC-------------CCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCC
Q 038396 2 HGKIPKWLLDPSMQY-------------LNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTV 68 (456)
Q Consensus 2 ~g~ip~~~~~~~l~~-------------L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 68 (456)
+|.+|+.+.+ +.+ +++|++++|+++ .+|..+++|+.|++++|.+++ +|.. +++|
T Consensus 47 ~~~~p~~~~~--l~~L~~l~l~~c~~~~l~~L~l~~~~l~-------~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L 113 (454)
T 1jl5_A 47 ERNAPPGNGE--QREMAVSRLRDCLDRQAHELELNNLGLS-------SLPELPPHLESLVASCNSLTE-LPEL---PQSL 113 (454)
T ss_dssp HHTSCTTSCC--CHHHHHHHHHHHHHHTCSEEECTTSCCS-------CCCSCCTTCSEEECCSSCCSS-CCCC---CTTC
T ss_pred cccCCccccc--chhcchhhhhhhhccCCCEEEecCCccc-------cCCCCcCCCCEEEccCCcCCc-cccc---cCCC
Confidence 4566766665 554 477888877776 455556789999999999886 5543 4788
Q ss_pred CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396 69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 148 (456)
Q Consensus 69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 148 (456)
++|++++|.+++ +|. .+++|++|++++|.+++ +| .|..+++|++|++++|++++ +|..+ .+|++|++++
T Consensus 114 ~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 114 KSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGN 182 (454)
T ss_dssp CEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCS
T ss_pred cEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcC
Confidence 889999988873 443 22378999999999885 66 58888999999999998884 55433 5889999999
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 149 NQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
|.+++ +| .++.+++|++|++++|++++++.. .++|++|++++|.++ .+|. +..+++|+.++++++.+
T Consensus 183 n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 183 NQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCC
T ss_pred CcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcC
Confidence 98885 45 588888999999999888875321 257888888888887 7773 77888888888887765
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.98 E-value=7.7e-31 Score=257.15 Aligned_cols=252 Identities=21% Similarity=0.219 Sum_probs=178.7
Q ss_pred CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396 44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123 (456)
Q Consensus 44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 123 (456)
...++.+++.++ .+|..+. ++++.|+|++|.+++..+..|..+. +|++|+|++|.++++.+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445666666665 4444333 4566666666666655555666665 66666666666666655666666666666666
Q ss_pred CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC-CcccccCCCCCCccCCCCccEEecccccCc
Q 038396 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS-NKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 202 (456)
+|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++ +.+..+.+..+ ..+++|++|++++|.++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCSSCCEEECTTSCCS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--hcccccCeecCCCCcCc
Confidence 6666655555566666666666666666655555666666666666666 33333333333 55666777777766665
Q ss_pred CCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCc
Q 038396 203 GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIP 282 (456)
Q Consensus 203 ~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 282 (456)
.+|. + ..+++|++|+|++|.+++..+
T Consensus 199 -~~~~--~---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 199 -EIPN--L---------------------------------------------------TPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp -SCCC--C---------------------------------------------------TTCSSCCEEECTTSCCCEECT
T ss_pred -cccc--c---------------------------------------------------CCCcccCEEECCCCccCccCh
Confidence 3331 0 014558999999999999888
Q ss_pred hhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396 283 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 283 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999999999988899999999999999999999977778888999999999999999987764
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2e-30 Score=254.33 Aligned_cols=313 Identities=16% Similarity=0.143 Sum_probs=228.1
Q ss_pred CChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh
Q 038396 5 IPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ 84 (456)
Q Consensus 5 ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 84 (456)
+| .+.. +++|++|+|++|+++.. . ...+++|++|++++|.+++. + +.++++|++|++++|.+++ +|
T Consensus 57 ~~-~l~~--l~~L~~L~Ls~n~l~~~-----~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~- 122 (457)
T 3bz5_A 57 MT-GIEK--LTGLTKLICTSNNITTL-----D-LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD- 122 (457)
T ss_dssp CT-TGGG--CTTCSEEECCSSCCSCC-----C-CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC-
T ss_pred Ch-hhcc--cCCCCEEEccCCcCCeE-----c-cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec-
Confidence 45 6888 99999999999999832 1 23388999999999999964 3 8899999999999999985 44
Q ss_pred hhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCC
Q 038396 85 CLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPN 164 (456)
Q Consensus 85 ~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 164 (456)
+..++ +|++|++++|.+++. + +..+++|++|++++|+..+.+ .+..+++|++|++++|.+++ +| ++.+++
T Consensus 123 -~~~l~-~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 -VSQNP-LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp -CTTCT-TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred -CCCCC-cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 77787 899999999999964 3 788899999999999655454 47888999999999999986 34 788899
Q ss_pred CCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCcccccccc
Q 038396 165 LNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIST 244 (456)
Q Consensus 165 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (456)
|+.|++++|++++. .+ ..+++|++|++++|++++ +| +..+++|+.+++++|.+.......+..........
T Consensus 193 L~~L~l~~N~l~~~---~l--~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DL--NQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCEEECCSSCCSCC---CC--TTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred CCEEECcCCcCCee---cc--ccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 99999999998876 23 678899999999999984 66 67788888888888776433222121111000000
Q ss_pred -ccceeEeeccCccccc-ccccccccEEEccCCCCCccCch--------hhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396 245 -YDYSLIMNSKGRMMTY-NKIPDILTGIILSSNRFDRVIPT--------SIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314 (456)
Q Consensus 245 -~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 314 (456)
....+..........+ ...++.|+.|++++|...+.+|. .+..+++|+.|++++|++++. + +..+++
T Consensus 264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~ 340 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTK 340 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCc
Confidence 0000001111000001 12357899999999987665443 256678999999999999974 3 899999
Q ss_pred CCeeeCCCCcccccCchhhhc-------------CCCCCEEeccCCcCcccCCC
Q 038396 315 LESLDLSNNRFSGQIPQQLVE-------------FTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 315 L~~L~Ls~N~l~~~~~~~l~~-------------l~~L~~L~ls~N~l~~~~p~ 355 (456)
|+.|++++|++++ ++ .+.. +..|..+++++|+++|.+|.
T Consensus 341 L~~L~l~~N~l~~-l~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 341 LKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CSEEECCSSCCCB-CT-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCT
T ss_pred CcEEECCCCCCCC-cc-ccccccccCCcEEecceeeecCccccccCcEEEEcCh
Confidence 9999999999986 22 1221 23466677777777777773
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.4e-30 Score=252.47 Aligned_cols=265 Identities=22% Similarity=0.301 Sum_probs=114.6
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
++|++|++++|++++ +| .|.++++|++|++++|+++ .+|..+ . +|++|++++|.+++ +| .+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---P-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---T-TCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---c-cccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 445555555555553 33 3555555555555555554 233221 1 45555555555553 33 345555555555
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
+++|++++ +|... ++|++|++++|.++ .+| .++.+++|++|++++|++++++. .+++|++|++++|.+
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYL 269 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCC
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcc
Confidence 55555553 22211 34555555555554 334 25555555555555555554321 124555555555555
Q ss_pred cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccC
Q 038396 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVI 281 (456)
Q Consensus 202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 281 (456)
+ .+|.. .++|+.+++++|.+.... ..+. ... ...... .....+...+++|++|++++|++++ +
T Consensus 270 ~-~l~~~----~~~L~~L~ls~N~l~~l~-----~~~~---~L~--~L~l~~-N~l~~i~~~~~~L~~L~Ls~N~l~~-l 332 (454)
T 1jl5_A 270 T-DLPEL----PQSLTFLDVSENIFSGLS-----ELPP---NLY--YLNASS-NEIRSLCDLPPSLEELNVSNNKLIE-L 332 (454)
T ss_dssp S-CCCCC----CTTCCEEECCSSCCSEES-----CCCT---TCC--EEECCS-SCCSEECCCCTTCCEEECCSSCCSC-C
T ss_pred c-ccCcc----cCcCCEEECcCCccCccc-----CcCC---cCC--EEECcC-CcCCcccCCcCcCCEEECCCCcccc-c
Confidence 5 23321 244555555554432100 0000 000 000000 0011112223456666666666655 2
Q ss_pred chhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccc--cCchhhhcC-------------CCCCEEeccC
Q 038396 282 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG--QIPQQLVEF-------------TFLEFFDVSD 346 (456)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~l~~l-------------~~L~~L~ls~ 346 (456)
|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++
T Consensus 333 p~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 333 PAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred ccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 322 355666666666665 3443 34566666666666665 455555544 5566666666
Q ss_pred CcCcc
Q 038396 347 NYLTG 351 (456)
Q Consensus 347 N~l~~ 351 (456)
|++++
T Consensus 406 N~l~~ 410 (454)
T 1jl5_A 406 NPLRE 410 (454)
T ss_dssp -----
T ss_pred CcCCc
Confidence 66655
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=9.5e-31 Score=257.40 Aligned_cols=253 Identities=20% Similarity=0.188 Sum_probs=220.2
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4578999999998 7787553 38999999999999988999999999999999999999888899999999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.++...+..|..+++|++|++++|++..+.+..+ ..+++|++|++++|...+.++...|..
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------- 194 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG-------------- 194 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------------
Confidence 9999998777789999999999999999998876666 789999999999855443555433332
Q ss_pred cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (456)
+++|++|++++|.+++. | .+..+++|+.|+|++|++++..|
T Consensus 195 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 195 -------------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECG
T ss_pred -------------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCc
Confidence 34588899999999875 3 58889999999999999999999
Q ss_pred ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..++.++.+++.+||+.|+|.+
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999888999999999999999999999665543 4577888999999999999964
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=256.21 Aligned_cols=253 Identities=18% Similarity=0.200 Sum_probs=220.6
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
..+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4678999999998 7887654 38999999999999888899999999999999999999888889999999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.++...+..|..+++|++|++++|++..+.+..+ ..+++|++|++++|...+.++...|..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------- 183 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG-------------- 183 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc--------------
Confidence 9999997777789999999999999999998876666 789999999999865443555433333
Q ss_pred cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (456)
+++|++|++++|.++.. | .+..+++|+.|+|++|++++..|
T Consensus 184 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 184 -------------------------------------LSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp -------------------------------------CSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECT
T ss_pred -------------------------------------ccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccCh
Confidence 34588899999999874 4 48889999999999999999989
Q ss_pred ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC-CCCCCCCCcccCCCCCCCCCCC
Q 038396 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG-KQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+.. ..++.++.+++.+||+.|+|.+
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999999999888999999999999999999999766543 4578889999999999999854
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.8e-31 Score=246.20 Aligned_cols=249 Identities=20% Similarity=0.223 Sum_probs=153.8
Q ss_pred CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396 69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 148 (456)
Q Consensus 69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 148 (456)
++++++++.++ .+|..+ +++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555555 444432 12566666666666655555556666666666666666655555566666666666666
Q ss_pred Cc-CCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCcccc
Q 038396 149 NQ-ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYL 227 (456)
Q Consensus 149 n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~ 227 (456)
|. ++...+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++ .++...+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~--------------- 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD--------------- 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT---------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHhcc---------------
Confidence 65 554445556666666666666666655544444 55566666666666665 333222221
Q ss_pred ccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCc
Q 038396 228 QDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPS 307 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 307 (456)
+++|++|++++|.+++..+..+..+++|+.|++++|++++..|.
T Consensus 152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 23366666666666666666677788888888888888877788
Q ss_pred cccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCCCCCcccCCCCCCCC
Q 038396 308 CLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFATFDNTSFDGNSGLCG 375 (456)
Q Consensus 308 ~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~ 375 (456)
.|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.++..+.+.+++......+...|.
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence 88888888888888888886666667888888888888888887766543333333333344444443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1e-30 Score=241.17 Aligned_cols=252 Identities=21% Similarity=0.258 Sum_probs=143.0
Q ss_pred CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE
Q 038396 18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL 96 (456)
Q Consensus 18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 96 (456)
++++.+++.++ .+|.. .++++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..++ +|++|
T Consensus 14 ~~~~c~~~~l~-------~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQ-------AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQL 85 (285)
T ss_dssp CEEECCSSCCS-------SCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEE
T ss_pred eEEEcCcCCcc-------cCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEE
Confidence 45566665554 33332 34555666666655554445555555555555555555544455555554 55555
Q ss_pred EccCCc-cceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 97 DLQGNN-FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 97 ~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
++++|. ++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 555554 4444445555555555555555555544444555555555555555555544444444455555555555544
Q ss_pred cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (456)
+++.+..+ ..+++
T Consensus 166 ~~~~~~~~--~~l~~----------------------------------------------------------------- 178 (285)
T 1ozn_A 166 SSVPERAF--RGLHS----------------------------------------------------------------- 178 (285)
T ss_dssp CEECTTTT--TTCTT-----------------------------------------------------------------
T ss_pred cccCHHHh--cCccc-----------------------------------------------------------------
Confidence 44332222 23333
Q ss_pred cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhc
Q 038396 256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVE 335 (456)
Q Consensus 256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~ 335 (456)
|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+....+.. .-
T Consensus 179 -----------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~ 246 (285)
T 1ozn_A 179 -----------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246 (285)
T ss_dssp -----------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred -----------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence 555555666666656667777788888888888888666666788888888888888876433311 11
Q ss_pred CCCCCEEeccCCcCcccCCCC
Q 038396 336 FTFLEFFDVSDNYLTGAIPLG 356 (456)
Q Consensus 336 l~~L~~L~ls~N~l~~~~p~~ 356 (456)
...++.+..+.+.+.|..|..
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGG
T ss_pred HHHHHhcccccCccccCCchH
Confidence 122444557778888887753
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=249.90 Aligned_cols=278 Identities=21% Similarity=0.238 Sum_probs=215.9
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 455566888888888 5565444 4788888888888865555788887 88888888888888778888888888888
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCC-cccccCCCCCCccCCCCccEEeccc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSN-KFYGIIKEPRTDCRFSKLHIIDLSN 198 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~ 198 (456)
++++|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++| .+....+..+ ..+++|++|++++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCC
Confidence 888888886555558888888888888888885443 46788888888888888 4666655555 6788888888888
Q ss_pred ccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC
Q 038396 199 NRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD 278 (456)
Q Consensus 199 n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 278 (456)
|.+++..|. .+.. +++|++|++++|.++
T Consensus 184 n~l~~~~~~-~l~~---------------------------------------------------l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 184 SDLQSYEPK-SLKS---------------------------------------------------IQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCEECTT-TTTT---------------------------------------------------CSEEEEEEEECSCST
T ss_pred CCcCccCHH-HHhc---------------------------------------------------cccCCeecCCCCccc
Confidence 888743332 1222 345889999999998
Q ss_pred ccCchhhhccCCCCeEeCCCccccccCCcccc---CCCCCCeeeCCCCcccc----cCchhhhcCCCCCEEeccCCcCcc
Q 038396 279 RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG---NLTNLESLDLSNNRFSG----QIPQQLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 279 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~ls~N~l~~ 351 (456)
......+..+++|+.|++++|++++..+..+. ..+.++.++++++.+++ .+|..+..+++|+.|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 76555667799999999999999976655443 45678889999988875 46788899999999999999999
Q ss_pred cCCCC--CCCCCCCCcccCCCCCCCCCC
Q 038396 352 AIPLG--KQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 352 ~~p~~--~~~~~l~~~~~~~n~~lc~~~ 377 (456)
.+|.. ..++.++.+++.+|++.|+++
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 45543 568889999999999999875
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.9e-30 Score=237.80 Aligned_cols=265 Identities=21% Similarity=0.216 Sum_probs=203.6
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccc--cchhhhcCCCCCeeecccCcCccc
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGE--IPSWICNLNTVKNLVLSHNNLSGV 81 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~ 81 (456)
.+|..+ .++|++|+|++|+++ .+.......+++|+.|++++|.++.. .+..+..+++|++|++++|.++ .
T Consensus 21 ~ip~~~----~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~ 92 (306)
T 2z66_A 21 SVPTGI----PSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 92 (306)
T ss_dssp SCCSCC----CTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-E
T ss_pred cCCCCC----CCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-c
Confidence 456544 458999999999997 23333334488999999999999843 3678888999999999999998 6
Q ss_pred cChhhhhCCCCCcEEEccCCccceeCC-ccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc-CCCccc
Q 038396 82 LPQCLGNFSDELSVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD-TFPSWL 159 (456)
Q Consensus 82 ~~~~~~~l~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~ 159 (456)
+|..+..++ +|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++ ..|..+
T Consensus 93 l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 93 MSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 777788888 89999999999996655 678999999999999999998888999999999999999999986 578899
Q ss_pred cCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccc
Q 038396 160 GTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVST 239 (456)
Q Consensus 160 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~ 239 (456)
..+++|++|++++|++++..+..+ ..+++|++|++++|.++ .+
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~---------------------------------- 214 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFF-SL---------------------------------- 214 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTSCCS-BC----------------------------------
T ss_pred hhCcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCCCccC-cc----------------------------------
Confidence 999999999999999998866665 66777788877777776 22
Q ss_pred cccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCC-CCCee
Q 038396 240 DLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT-NLESL 318 (456)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L 318 (456)
.+..+..+++|+.|++++|++++..|..+..++ +|++|
T Consensus 215 -----------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 215 -----------------------------------------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp -----------------------------------------CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred -----------------------------------------ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 223445566677777777777666666666663 67777
Q ss_pred eCCCCcccccCc--hhhhcCCCCCEEeccCCcCcccCCC
Q 038396 319 DLSNNRFSGQIP--QQLVEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 319 ~Ls~N~l~~~~~--~~l~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
+|++|.++...+ .....+...+.+.+..+.+.|..|.
T Consensus 254 ~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp ECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred EccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 777777664321 1122233444555666677766664
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-29 Score=237.53 Aligned_cols=226 Identities=19% Similarity=0.208 Sum_probs=165.0
Q ss_pred CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEE
Q 038396 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 144 (456)
Q Consensus 65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 144 (456)
.+.+++|++++|.++ .+|..++.+. +|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356677777777776 6666666666 6777777777776 56666677777777777777776 556667777777777
Q ss_pred eCcCCcCCcCCCcccc---------CCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccc
Q 038396 145 DLGNNQISDTFPSWLG---------TIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDA 215 (456)
Q Consensus 145 ~Ls~n~i~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 215 (456)
++++|.+.+.+|..+. .+++|++|++++|+++.+ +..+ ..+++|++|++++|.++ .+|.. +..
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l--~~l~~L~~L~L~~N~l~-~l~~~-l~~--- 227 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASI--ANLQNLKSLKIRNSPLS-ALGPA-IHH--- 227 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGG--GGCTTCCEEEEESSCCC-CCCGG-GGG---
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhh--cCCCCCCEEEccCCCCC-cCchh-hcc---
Confidence 7777666666665544 377777777777777633 2223 66777777777777776 34432 211
Q ss_pred cccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEe
Q 038396 216 MKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLN 295 (456)
Q Consensus 216 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 295 (456)
+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 228 ------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 228 ------------------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ------------------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred ------------------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 34478888888888887888888889999999
Q ss_pred CCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396 296 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 296 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~ 350 (456)
|++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9998888888888888999999999998888889999999999999988877664
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=2.7e-31 Score=248.16 Aligned_cols=248 Identities=21% Similarity=0.230 Sum_probs=180.2
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCc-cccChhhh-------hCCCCCcEEEccCCccceeCCccc-
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS-GVLPQCLG-------NFSDELSVLDLQGNNFFGTIPDTF- 111 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~~L~~L~Ls~n~i~~~~~~~~- 111 (456)
.++|+.+++++|.+ .+|..+... |++|++++|.++ ..+|..+. .+. +|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHH
Confidence 34567777777777 556655544 778888888874 34555554 566 78888888888887777765
Q ss_pred -cCCCCccEEeccCCcCcccCCccccCC-----CCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccC--CCCC
Q 038396 112 -IKESRLGVIDLSHNLFQGRIPRSLVNC-----SKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGII--KEPR 183 (456)
Q Consensus 112 -~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~ 183 (456)
..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..+..++.+++|++|++++|++.+.. +...
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7788888888888888765 6666665 78888888888888777777888888888888888765431 1112
Q ss_pred CccCCCCccEEecccccCcCCCCh---hhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccc
Q 038396 184 TDCRFSKLHIIDLSNNRFTGKLPS---KSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTY 260 (456)
Q Consensus 184 ~~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (456)
.+..+++|++|++++|.++ .++. ..+..
T Consensus 196 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~------------------------------------------------ 226 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGME-TPSGVCSALAAA------------------------------------------------ 226 (312)
T ss_dssp CTTSCTTCCEEECTTSCCC-CHHHHHHHHHHT------------------------------------------------
T ss_pred HhccCCCCCEEECCCCcCc-chHHHHHHHHhc------------------------------------------------
Confidence 2256778888888888776 2221 11111
Q ss_pred ccccccccEEEccCCCCCccCc-hhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCC
Q 038396 261 NKIPDILTGIILSSNRFDRVIP-TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFL 339 (456)
Q Consensus 261 ~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 339 (456)
+++|++|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|
T Consensus 227 ---l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 227 ---RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp ---TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred ---CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 3458888899998888664 45666789999999999998 7777666 7899999999999855 65 8888999
Q ss_pred CEEeccCCcCcc
Q 038396 340 EFFDVSDNYLTG 351 (456)
Q Consensus 340 ~~L~ls~N~l~~ 351 (456)
++|++++|++++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 999999998875
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.9e-29 Score=235.73 Aligned_cols=226 Identities=19% Similarity=0.268 Sum_probs=185.4
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 367788888888887 66777777888888888888888 7787788887 7888888888888 667778888888888
Q ss_pred eccCCcCcccCCccccC---------CCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCc
Q 038396 121 DLSHNLFQGRIPRSLVN---------CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKL 191 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~---------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 191 (456)
++++|++.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|+++++++ . +..+++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~-~--l~~l~~L 231 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-A--IHHLPKL 231 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG-G--GGGCTTC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch-h--hccCCCC
Confidence 88887777777776654 889999999999988 778888889999999999999887643 2 3778899
Q ss_pred cEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEE
Q 038396 192 HIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII 271 (456)
Q Consensus 192 ~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 271 (456)
++|++++|.+.+.+|.. +.. +++|++|+
T Consensus 232 ~~L~Ls~n~~~~~~p~~-~~~---------------------------------------------------l~~L~~L~ 259 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPI-FGG---------------------------------------------------RAPLKRLI 259 (328)
T ss_dssp CEEECTTCTTCCBCCCC-TTC---------------------------------------------------CCCCCEEE
T ss_pred CEEECcCCcchhhhHHH-hcC---------------------------------------------------CCCCCEEE
Confidence 99999998888666632 211 34588889
Q ss_pred ccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccc
Q 038396 272 LSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326 (456)
Q Consensus 272 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 326 (456)
+++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9998888889989999999999999999999999999999999999999988765
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-30 Score=244.34 Aligned_cols=262 Identities=25% Similarity=0.233 Sum_probs=128.3
Q ss_pred EEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCc
Q 038396 47 YLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 126 (456)
Q Consensus 47 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 126 (456)
.+++.+.+.......+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++..+ |..+++|++|++++|+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34444444433333344444555555555555544344444444 45555555555543332 4445555555555555
Q ss_pred CcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396 127 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 127 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 206 (456)
+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccH
Confidence 54221 124555555555555433222 23445555555555554433333 444555555555555542222
Q ss_pred hhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhh
Q 038396 207 SKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIA 286 (456)
Q Consensus 207 ~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 286 (456)
...+..+++|+.+++++|.+.... ....+++|++|++++|.+++.++ .+.
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~-----------------------------~~~~l~~L~~L~Ls~N~l~~l~~-~~~ 211 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVK-----------------------------GQVVFAKLKTLDLSSNKLAFMGP-EFQ 211 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE-----------------------------CCCCCTTCCEEECCSSCCCEECG-GGG
T ss_pred HHHhhccCcCCEEECCCCcCcccc-----------------------------cccccccCCEEECCCCcCCcchh-hhc
Confidence 111122222222222222210000 00013446777777777766433 366
Q ss_pred ccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccc-ccCchhhhcCCCCCEEeccC-CcCccc
Q 038396 287 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS-GQIPQQLVEFTFLEFFDVSD-NYLTGA 352 (456)
Q Consensus 287 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~ls~-N~l~~~ 352 (456)
.+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++ +.+++.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 6677777777777776 45556666677777777777766 55666666666677666663 334443
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.8e-28 Score=245.10 Aligned_cols=262 Identities=23% Similarity=0.293 Sum_probs=215.0
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
.++++|++++|.|+ .+|.. .++|+.|++++|.++ .+|. .+++|++|+|++|.++ .+|. .++ +|
T Consensus 40 ~~l~~L~ls~n~L~-------~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~-~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLT-------TLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPP-GL 103 (622)
T ss_dssp HCCCEEECCSSCCS-------CCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCT-TC
T ss_pred CCCcEEEecCCCcC-------ccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCC-CC
Confidence 46999999999997 44443 479999999999999 4555 5789999999999998 6676 455 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
++|++++|.+++. |. .+++|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|
T Consensus 104 ~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N 171 (622)
T 3g06_A 104 LELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNN 171 (622)
T ss_dssp CEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCC
Confidence 9999999999954 44 56899999999999994 5543 4899999999999985 443 3578999999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeec
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNS 253 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (456)
.+++++ ..+++|+.|++++|.++ .+|. ...+|+.+++++|.+..
T Consensus 172 ~l~~l~------~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~------------------------- 215 (622)
T 3g06_A 172 QLTSLP------MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS------------------------- 215 (622)
T ss_dssp CCSCCC------CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-------------------------
T ss_pred CCCCCc------ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-------------------------
Confidence 998864 34689999999999998 5664 24677888888765521
Q ss_pred cCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhh
Q 038396 254 KGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQL 333 (456)
Q Consensus 254 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l 333 (456)
+...+++|+.|++++|.++++ | ..+++|+.|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|..+
T Consensus 216 ------l~~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l 280 (622)
T 3g06_A 216 ------LPALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESL 280 (622)
T ss_dssp ------CCCCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGG
T ss_pred ------cCCCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHH
Confidence 111246799999999999984 4 45689999999999999 5565 6789999999999999 789999
Q ss_pred hcCCCCCEEeccCCcCcccCCC
Q 038396 334 VEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 334 ~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
..+++|+.|++++|++++.+|.
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHHH
T ss_pred hhccccCEEEecCCCCCCcCHH
Confidence 9999999999999999987764
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.7e-31 Score=263.77 Aligned_cols=322 Identities=21% Similarity=0.144 Sum_probs=184.5
Q ss_pred ChhhhhhcCCCCCEEEccCCCCCC--CCcCccCCCCCCCCCcEEEccCCcccc----ccchhhhcCCCCCeeecccCcCc
Q 038396 6 PKWLLDPSMQYLNALNLSHNLLTS--SNNLQGPLPVPPPETILYLVSNNSLTG----EIPSWICNLNTVKNLVLSHNNLS 79 (456)
Q Consensus 6 p~~~~~~~l~~L~~L~Ls~N~l~~--~~~l~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~ 79 (456)
|+.+.. +++|++|||++|.+++ ...+...++...++|++|++++|.++. .++..+..+++|++|++++|.++
T Consensus 49 ~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 49 SSALRV--NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHHHHT--CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHh--CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 334444 5566666666665541 001111122112256666666666663 34556666666666666666665
Q ss_pred cccChhhhhC----CCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCcccCCcccc-----CCCCCcEEeC
Q 038396 80 GVLPQCLGNF----SDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQGRIPRSLV-----NCSKLEFLDL 146 (456)
Q Consensus 80 ~~~~~~~~~l----~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L~~L~L 146 (456)
+..+..+... .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 4433333321 11466666666666642 234445556667777776666543333332 2456677777
Q ss_pred cCCcCCcC----CCccccCCCCCCEEEccCCcccccCCCCC---CccCCCCccEEecccccCcCC----CChhhhhCccc
Q 038396 147 GNNQISDT----FPSWLGTIPNLNVLILRSNKFYGIIKEPR---TDCRFSKLHIIDLSNNRFTGK----LPSKSFLCLDA 215 (456)
Q Consensus 147 s~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~~L~ls~n~l~~~----~~~~~~~~l~~ 215 (456)
++|.+++. ++..+..+++|++|++++|.+.+.....+ ....+++|++|++++|.+++. ++ ..+..+++
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~ 285 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC-RVLRAKES 285 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCTT
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH-HHHhhCCC
Confidence 77766642 34455566677777777776654211000 002356677777777766521 22 22444666
Q ss_pred cccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCcc----CchhhhccCCC
Q 038396 216 MKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV----IPTSIANLKGL 291 (456)
Q Consensus 216 l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L 291 (456)
|+.+++++|.+.......+. .......+.|++|++++|.+++. .+..+..+++|
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~----------------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLC----------------------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHH----------------------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cceEECCCCCCchHHHHHHH----------------------HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 66666666544111000000 00011124688888888888765 34556677888
Q ss_pred CeEeCCCccccccCCccccC-----CCCCCeeeCCCCcccc----cCchhhhcCCCCCEEeccCCcCccc
Q 038396 292 QVLNLDNNNLQGHIPSCLGN-----LTNLESLDLSNNRFSG----QIPQQLVEFTFLEFFDVSDNYLTGA 352 (456)
Q Consensus 292 ~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~ls~N~l~~~ 352 (456)
++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 88888888887665554442 6788888888888885 6777788888888888888888753
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=1.6e-27 Score=218.67 Aligned_cols=227 Identities=21% Similarity=0.164 Sum_probs=160.3
Q ss_pred eecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCc
Q 038396 71 LVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 150 (456)
Q Consensus 71 L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 150 (456)
++..+..++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 445555555 4554432 257777777777776666667777777777777777776666667777777777777777
Q ss_pred CCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCC-CChhhhhCccccccccccCcccccc
Q 038396 151 ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK-LPSKSFLCLDAMKIVNTSQLRYLQD 229 (456)
Q Consensus 151 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~l~l~~~~~~~~ 229 (456)
+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +|. .+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~-~~~~----------------- 147 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPE-YFSN----------------- 147 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCG-GGGG-----------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCch-hhcc-----------------
Confidence 776666667777777777777777766654444 6677777777777777631 231 1211
Q ss_pred ccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCC----eEeCCCccccccC
Q 038396 230 VISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ----VLNLDNNNLQGHI 305 (456)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~ 305 (456)
+++|++|++++|.+++..+..+..+++|+ .|++++|++++..
T Consensus 148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence 24477788888888777777777777776 8999999999666
Q ss_pred CccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC
Q 038396 306 PSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356 (456)
Q Consensus 306 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 356 (456)
+..+. ..+|++|++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus 194 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 194 PGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 65554 458999999999999766667889999999999999999988753
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.6e-29 Score=247.60 Aligned_cols=149 Identities=19% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..++ +|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 355555555555555555555555555555555555554333 44454 55555555555553321 14555555
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+..+. ..+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc
Confidence 555555543332 234555555555555555455555555555555555555544333220 1345555555555554
Q ss_pred c
Q 038396 202 T 202 (456)
Q Consensus 202 ~ 202 (456)
+
T Consensus 182 ~ 182 (487)
T 3oja_A 182 Y 182 (487)
T ss_dssp C
T ss_pred c
Confidence 4
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.7e-29 Score=235.94 Aligned_cols=253 Identities=23% Similarity=0.247 Sum_probs=206.4
Q ss_pred hhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccc-eeCCcccc-------CCCCccEEeccCCcCcccCC
Q 038396 61 WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFF-GTIPDTFI-------KESRLGVIDLSHNLFQGRIP 132 (456)
Q Consensus 61 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~ 132 (456)
.+...++|++|++++|.+ .+|..+.. .|++|++++|.++ ..+|..+. ++++|++|++++|++++..|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 456678899999999999 67887765 3899999999995 44666554 78999999999999998888
Q ss_pred ccc--cCCCCCcEEeCcCCcCCcCCCccccCC-----CCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCC
Q 038396 133 RSL--VNCSKLEFLDLGNNQISDTFPSWLGTI-----PNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKL 205 (456)
Q Consensus 133 ~~l--~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 205 (456)
..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..+..+ ..+++|++|++++|++.+.+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcch
Confidence 876 8999999999999999977 8777776 899999999999998877766 78999999999999976432
Q ss_pred ChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCcc---Cc
Q 038396 206 PSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV---IP 282 (456)
Q Consensus 206 ~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~ 282 (456)
+.. ... ....+++|++|++++|.+++. ..
T Consensus 190 ~~~--~~~----------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 190 GLI--SAL----------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHH--HHS----------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHH--HHH----------------------------------------------HhccCCCCCEEECCCCcCcchHHHHH
Confidence 110 000 001145699999999999842 22
Q ss_pred hhhhccCCCCeEeCCCccccccCC-ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCCCCCCC
Q 038396 283 TSIANLKGLQVLNLDNNNLQGHIP-SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLGKQFAT 361 (456)
Q Consensus 283 ~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 361 (456)
..+..+++|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |....++.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~ 297 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQ 297 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCE
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCC
Confidence 445678999999999999997775 55677899999999999999 7787765 8999999999999977 66667888
Q ss_pred CCCcccCCCCCC
Q 038396 362 FDNTSFDGNSGL 373 (456)
Q Consensus 362 l~~~~~~~n~~l 373 (456)
++.+++.+|+..
T Consensus 298 L~~L~L~~N~l~ 309 (312)
T 1wwl_A 298 VGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECTTCTTT
T ss_pred CCEEeccCCCCC
Confidence 888899999753
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.2e-29 Score=246.40 Aligned_cols=219 Identities=25% Similarity=0.216 Sum_probs=175.0
Q ss_pred CCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEE
Q 038396 65 LNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 144 (456)
Q Consensus 65 l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 144 (456)
+++|++|+|++|.+++..|..|..++ +|++|+|++|.+++..| |..+++|++|++++|.+++.. ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 44899999999999977778899988 89999999999997765 889999999999999998543 23899999
Q ss_pred eCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCc
Q 038396 145 DLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQL 224 (456)
Q Consensus 145 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~ 224 (456)
++++|.+++..+. .+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..|......
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------------ 167 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------------ 167 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh------------
Confidence 9999999866543 46889999999999998876666 778999999999999985444322112
Q ss_pred cccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCcccccc
Q 038396 225 RYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGH 304 (456)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 304 (456)
++.|+.|+|++|.+++..+ ...+++|+.|+|++|++++.
T Consensus 168 ---------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 168 ---------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp ---------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence 3447888888888877522 33578888888888888854
Q ss_pred CCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396 305 IPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 305 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 351 (456)
. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.+
T Consensus 207 ~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 207 G-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp C-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred C-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 4 447788888888888888884 67777788888888888888873
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1e-30 Score=258.15 Aligned_cols=353 Identities=16% Similarity=0.129 Sum_probs=177.2
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCcccc----ccchhhhcCCCCCeeecccCcCccccChhhhhCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTG----EIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFS 90 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 90 (456)
++|++|||++|+++... + ..+...+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+....
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-W-AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHH-H-HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchh-H-HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34666666666654110 0 0001114566666666666653 2344555566666666666666544343333322
Q ss_pred C----CCcEEEccCCccce----eCCccccCCCCccEEeccCCcCcccCCcccc-----CCCCCcEEeCcCCcCCcCC--
Q 038396 91 D----ELSVLDLQGNNFFG----TIPDTFIKESRLGVIDLSHNLFQGRIPRSLV-----NCSKLEFLDLGNNQISDTF-- 155 (456)
Q Consensus 91 ~----~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L~~L~Ls~n~i~~~~-- 155 (456)
. +|++|++++|.++. .++..+..+++|++|++++|++++..+..+. ..++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 1 36666666666653 3355566666666666666666543222221 2345666666666665432
Q ss_pred --CccccCCCCCCEEEccCCcccccCCCCCC---ccCCCCccEEecccccCcCCC---ChhhhhCccccccccccCcccc
Q 038396 156 --PSWLGTIPNLNVLILRSNKFYGIIKEPRT---DCRFSKLHIIDLSNNRFTGKL---PSKSFLCLDAMKIVNTSQLRYL 227 (456)
Q Consensus 156 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~---~~~~~~~l~~l~~l~l~~~~~~ 227 (456)
+..+..+++|++|++++|.+.......+. ....++|++|++++|.+++.- -...+..+++|+.++++++.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33444556666666666665432111110 001345666666666665210 0123444556666666665432
Q ss_pred ccccCCCCC-ccccccccccceeEeeccCc-------ccccccccccccEEEccCCCCCccCchhhhcc-----CCCCeE
Q 038396 228 QDVISPYGQ-VSTDLISTYDYSLIMNSKGR-------MMTYNKIPDILTGIILSSNRFDRVIPTSIANL-----KGLQVL 294 (456)
Q Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L 294 (456)
......+.. ......... .+....... .......++.|++|++++|.+++..+..+... ++|++|
T Consensus 241 ~~~~~~l~~~~~~~~~~L~--~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLR--TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCC--EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred hHHHHHHHHHHhcCCCCce--EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 211000000 000000000 000000000 00001114567777777777765444333332 577777
Q ss_pred eCCCcccccc----CCccccCCCCCCeeeCCCCcccccCchhhhc-----CCCCCEEeccCCcCcc----cCCCC-CCCC
Q 038396 295 NLDNNNLQGH----IPSCLGNLTNLESLDLSNNRFSGQIPQQLVE-----FTFLEFFDVSDNYLTG----AIPLG-KQFA 360 (456)
Q Consensus 295 ~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~-----l~~L~~L~ls~N~l~~----~~p~~-~~~~ 360 (456)
++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|+.|++++|.+++ .+|.. ...+
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 7777777654 3455666777888888888776554444432 5677888888887774 33322 2345
Q ss_pred CCCCcccCCCC
Q 038396 361 TFDNTSFDGNS 371 (456)
Q Consensus 361 ~l~~~~~~~n~ 371 (456)
.++.+++.+|+
T Consensus 399 ~L~~L~l~~N~ 409 (461)
T 1z7x_W 399 SLRELDLSNNC 409 (461)
T ss_dssp CCCEEECCSSS
T ss_pred CccEEECCCCC
Confidence 66666777665
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.6e-26 Score=231.75 Aligned_cols=255 Identities=29% Similarity=0.341 Sum_probs=209.5
Q ss_pred CCChhhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC
Q 038396 4 KIPKWLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP 83 (456)
Q Consensus 4 ~ip~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 83 (456)
.+|..+ .++|++|+|++|.|+ .+|..+++|++|++++|++++ +|. .+++|++|++++|.++ .+|
T Consensus 54 ~lp~~l----~~~L~~L~L~~N~l~-------~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~ 117 (622)
T 3g06_A 54 TLPDCL----PAHITTLVIPDNNLT-------SLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLP 117 (622)
T ss_dssp CCCSCC----CTTCSEEEECSCCCS-------CCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCC
T ss_pred ccChhh----CCCCcEEEecCCCCC-------CCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCC
Confidence 566655 368999999999997 566678999999999999994 554 7899999999999998 556
Q ss_pred hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCC
Q 038396 84 QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP 163 (456)
Q Consensus 84 ~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 163 (456)
. .+. +|++|++++|.++. +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+++ +| ..++
T Consensus 118 ~---~l~-~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~ 181 (622)
T 3g06_A 118 A---LPS-GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPS 181 (622)
T ss_dssp C---CCT-TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred C---CCC-CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCC
Confidence 5 344 89999999999995 5543 4899999999999994 444 35789999999999985 55 5578
Q ss_pred CCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccc
Q 038396 164 NLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLIS 243 (456)
Q Consensus 164 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~ 243 (456)
+|+.|++++|.+++++. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+..
T Consensus 182 ~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~--------------- 235 (622)
T 3g06_A 182 GLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS--------------- 235 (622)
T ss_dssp TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC---------------
T ss_pred CCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc---------------
Confidence 99999999999987643 2478999999999998 6664 34778889988876521
Q ss_pred cccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCC
Q 038396 244 TYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 323 (456)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 323 (456)
+...+++|++|++++|.++.+ |. .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus 236 ----------------lp~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 236 ----------------LPVLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp ----------------CCCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred ----------------CCCCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 112256799999999999974 43 6789999999999999 77899999999999999999
Q ss_pred cccccCchhhhcCC
Q 038396 324 RFSGQIPQQLVEFT 337 (456)
Q Consensus 324 ~l~~~~~~~l~~l~ 337 (456)
.+++..|..+..++
T Consensus 295 ~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 295 PLSERTLQALREIT 308 (622)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhcc
Confidence 99998888776654
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=7.5e-28 Score=225.32 Aligned_cols=241 Identities=21% Similarity=0.209 Sum_probs=189.8
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
.++..+++.+.+.......+..++ +|++|++++|.+++..|..|..+++|++|++++|++++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGG-GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCC-CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 355667888888744444444444 89999999999998888899999999999999999996654 899999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.++ .++...+..+++|+.+++++|.+
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCC
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCC
Confidence 999998432 348999999999999987543 3578999999999998 56656678888888888888766
Q ss_pred cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (456)
...... .+...++.|++|++++|.+++. + ....+++|++|+|++|++++ +|
T Consensus 157 ~~~~~~--------------------------~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 157 DTVNFA--------------------------ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp CEEEGG--------------------------GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred CcccHH--------------------------HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence 321111 1111246689999999998875 2 23357889999999999984 44
Q ss_pred ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 351 (456)
..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 55888889999999999988 567778888899999999999883
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.3e-26 Score=208.35 Aligned_cols=207 Identities=21% Similarity=0.232 Sum_probs=134.7
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
..+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3556666666666 4554332 25666666666666555555666666666666666666444444555666666666
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.+++..+..+..+++|++|++++|++++..+..+ ..+++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~------------------------------------ 134 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTK------------------------------------ 134 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTT------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcC------------------------------------
Confidence 6666654444445555555555555555554433322 33334
Q ss_pred cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (456)
|++|++++|.+++..+..+..+++|+.|+|++|++++..+
T Consensus 135 ----------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 135 ----------------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp ----------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----------------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 5555555555555555567778888888888888887777
Q ss_pred ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCC
Q 038396 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPL 355 (456)
Q Consensus 307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 355 (456)
..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 7788888999999999998866666788889999999999999887763
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2e-26 Score=211.35 Aligned_cols=211 Identities=23% Similarity=0.219 Sum_probs=120.6
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3466666666666655555566666666666666666544444555555 566666666666555555555555555555
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccccc
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNR 200 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 200 (456)
+++|++++..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|++++.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---------------------- 164 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---------------------- 164 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE----------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC----------------------
Confidence 555555544444455555555555555555432 344455555555555555544433
Q ss_pred CcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccccccc-EEEccCCCCCc
Q 038396 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILT-GIILSSNRFDR 279 (456)
Q Consensus 201 l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~ 279 (456)
+...+..+..++. +. +|++++|.+++
T Consensus 165 -----~~~~~~~l~~L~~------------------------------------------------l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 165 -----YCTDLRVLHQMPL------------------------------------------------LNLSLDLSLNPMNF 191 (276)
T ss_dssp -----CGGGGHHHHTCTT------------------------------------------------CCEEEECCSSCCCE
T ss_pred -----CHHHhhhhhhccc------------------------------------------------cceeeecCCCcccc
Confidence 2222222222111 22 56667777766
Q ss_pred cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI 329 (456)
Q Consensus 280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 329 (456)
..+..+.. .+|+.|++++|++++..+..|..+++|++|++++|+++...
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 55544433 47888888888888666666778888888888888887543
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=5.7e-26 Score=209.35 Aligned_cols=206 Identities=23% Similarity=0.280 Sum_probs=138.5
Q ss_pred hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396 62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 141 (456)
Q Consensus 62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 141 (456)
+.++++++++++++|.++ .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 456777888888888887 5665543 268888888888877777777788888888888888775433 2667777
Q ss_pred cEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccc
Q 038396 142 EFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221 (456)
Q Consensus 142 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l 221 (456)
++|++++|.++ .+|..+..+++|++|++++|+++++.+..+ ..+++|++|++++|.++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~------------------- 137 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK------------------- 137 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCC-------------------
Confidence 88888887776 556666677777777777777766654444 45555566655555554
Q ss_pred cCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccc
Q 038396 222 SQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNL 301 (456)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (456)
+.++..|..+++|+.|+|++|++
T Consensus 138 ---------------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 138 ---------------------------------------------------------TLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ---------------------------------------------------------CCCTTTTTTCTTCCEEECTTSCC
T ss_pred ---------------------------------------------------------ccChhhcccccCCCEEECCCCcC
Confidence 33344455566666666666666
Q ss_pred cccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccC
Q 038396 302 QGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAI 353 (456)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 353 (456)
++..+..|..+++|++|+|++|+++ .+|..+...++|+.+++++|++.|.+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 6555555566667777777777766 55666666667777777777776654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3e-25 Score=202.73 Aligned_cols=201 Identities=20% Similarity=0.308 Sum_probs=178.5
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
.+.+.+++++++++ .+|.. .++++.|++++|++++..+..|.++++|++|++++|.+++..+..+..++ +|
T Consensus 16 ~~~~~l~~~~~~l~-------~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~L 87 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-------AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NL 87 (270)
T ss_dssp TTTTEEECTTSCCS-------SCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT-TC
T ss_pred CCCCEEEccCCCCC-------ccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC-CC
Confidence 35889999999998 45543 56899999999999987778999999999999999999954444567777 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 99999999999877788899999999999999999888888999999999999999999777777899999999999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
+++++.+..+ ..+++|++|++++|.++ .+|...+..+++|+.+++++|++
T Consensus 168 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 168 QLKRVPEGAF--DKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSCCCTTTT--TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCcEeChhHh--ccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 9998876656 78899999999999998 77877888999999999999876
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=2e-25 Score=205.68 Aligned_cols=207 Identities=22% Similarity=0.175 Sum_probs=154.8
Q ss_pred ccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCC
Q 038396 111 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSK 190 (456)
Q Consensus 111 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 190 (456)
+..+++++++++++|.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.++++... ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence 345566666666666666 3444443 4666677777776666566666677777777777776665432 45677
Q ss_pred ccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEE
Q 038396 191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI 270 (456)
Q Consensus 191 L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 270 (456)
|++|++++|.++ .+|.. +.. +++|++|
T Consensus 79 L~~L~Ls~N~l~-~l~~~-~~~---------------------------------------------------l~~L~~L 105 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLL-GQT---------------------------------------------------LPALTVL 105 (290)
T ss_dssp CCEEECCSSCCS-SCCCC-TTT---------------------------------------------------CTTCCEE
T ss_pred CCEEECCCCcCC-cCchh-hcc---------------------------------------------------CCCCCEE
Confidence 777777777776 44421 111 3447888
Q ss_pred EccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396 271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 271 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~ 350 (456)
++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 88888888877788999999999999999999888888899999999999999999666667889999999999999999
Q ss_pred ccCCCCCCCCCCCCcccCCCCCCCCCC
Q 038396 351 GAIPLGKQFATFDNTSFDGNSGLCGRP 377 (456)
Q Consensus 351 ~~~p~~~~~~~l~~~~~~~n~~lc~~~ 377 (456)
...+.......++.+.+.+||+.|+|.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ccChhhcccccCCeEEeCCCCccCcCc
Confidence 544444556678889999999999875
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.6e-25 Score=204.65 Aligned_cols=228 Identities=21% Similarity=0.233 Sum_probs=169.6
Q ss_pred CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 16 YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 16 ~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
++..+++.++.+++.... ..+++++.|++++|.++. + ..+..+++|++|++++|.+++ + ..+..++ +|++
T Consensus 20 ~l~~l~l~~~~~~~~~~~-----~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~ 89 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQ-----NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELT-NLTY 89 (272)
T ss_dssp HHHHHHHTCSCTTSEECH-----HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCT-TCCE
T ss_pred HHHHHHhcCccccccccc-----ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCC-CCCE
Confidence 355566666665421111 116778888888888873 3 347788888888888888874 3 3677777 7888
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..++.+++|++|++++|++
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 88888888877777788888888888888888877777788888888888888888877777778888888888888888
Q ss_pred cccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccC
Q 038396 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKG 255 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (456)
++..+..+ ..+++|++|++++|.+++ ++...+..
T Consensus 170 ~~~~~~~~--~~l~~L~~L~L~~N~l~~-~~~~~~~~------------------------------------------- 203 (272)
T 3rfs_A 170 QSLPEGVF--DKLTQLKDLRLYQNQLKS-VPDGVFDR------------------------------------------- 203 (272)
T ss_dssp CCCCTTTT--TTCTTCCEEECCSSCCSC-CCTTTTTT-------------------------------------------
T ss_pred CccCHHHh--cCCccCCEEECCCCcCCc-cCHHHHhC-------------------------------------------
Confidence 87766555 678888888888888883 44332332
Q ss_pred cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCC
Q 038396 256 RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 314 (456)
Q Consensus 256 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 314 (456)
+++|++|++++|.+.+. +++|+.|++..|+++|.+|..++.++.
T Consensus 204 --------l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 204 --------LTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --------CTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --------CcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 23477777777776543 456888888888888888888776654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.8e-25 Score=204.45 Aligned_cols=222 Identities=18% Similarity=0.231 Sum_probs=160.2
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
.+..+++..+.+.+.. ....+. +|+.|++++|.++. . ..+..+++|++|++++|++++ + ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~-~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELN-SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHT-TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCccccccc--cccccc-ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 4445566666665332 234555 67777777777663 2 246667777777777777764 2 35677777777777
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.+++..+..++.+++|++|++++|++++..+..+ ..+++|++|++++|.++ .++...+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~-------------- 155 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQ-SLPKGVFDK-------------- 155 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccC-ccCHHHhcc--------------
Confidence 7777776666667777777777777777776655544 66777777777777776 444322222
Q ss_pred cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCC
Q 038396 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIP 306 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (456)
+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 156 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 156 -------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 2347778888888887777778889999999999999998888
Q ss_pred ccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCCCC
Q 038396 307 SCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIPLG 356 (456)
Q Consensus 307 ~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 356 (456)
..+..+++|++|++++|.+.+. ++.|+.+++..|.++|.+|..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 8889999999999999988754 457889999999999999853
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=208.65 Aligned_cols=231 Identities=19% Similarity=0.193 Sum_probs=174.5
Q ss_pred CCCCeeecccCcCccccCh---hhhhCCCCCcEEEccCCccceeCCccc--cCCCCccEEeccCCcCcccCC----cccc
Q 038396 66 NTVKNLVLSHNNLSGVLPQ---CLGNFSDELSVLDLQGNNFFGTIPDTF--IKESRLGVIDLSHNLFQGRIP----RSLV 136 (456)
Q Consensus 66 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~ 136 (456)
..++.+.+.++.++...-. .+..+. +|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3567788887776532111 122344 69999999999998888887 889999999999999986544 3455
Q ss_pred CCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCccccc--CCCCCCccCCCCccEEecccccCcCCCChhhhhCcc
Q 038396 137 NCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGI--IKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLD 214 (456)
Q Consensus 137 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~ 214 (456)
.+++|++|++++|.+++..+..++.+++|++|++++|++.+. .+.......+++|++|++++|.++ .++.....-
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-- 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL-- 219 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH--
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH--
Confidence 789999999999999888888899999999999999997652 111222257889999999999886 333210000
Q ss_pred ccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhcc---CCC
Q 038396 215 AMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL---KGL 291 (456)
Q Consensus 215 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l---~~L 291 (456)
...+++|++|+|++|.+++..|..+..+ ++|
T Consensus 220 ----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L 253 (310)
T 4glp_A 220 ----------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL 253 (310)
T ss_dssp ----------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred ----------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence 0013458889999999988767666666 699
Q ss_pred CeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcc
Q 038396 292 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTG 351 (456)
Q Consensus 292 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 351 (456)
++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999999999 6677664 7999999999999853 43 6788999999999999874
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=7.1e-25 Score=196.56 Aligned_cols=196 Identities=18% Similarity=0.237 Sum_probs=107.6
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCc-CcccCCccccCCCCCcEEeCcC-CcCCcCCCccccCCCCCCEEE
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL-FQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTIPNLNVLI 169 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ 169 (456)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 46666666666665555555566666666666664 5544444556666666666665 566554445555666666666
Q ss_pred ccCCcccccCCCCCCccCCCCcc---EEecccc-cCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccc
Q 038396 170 LRSNKFYGIIKEPRTDCRFSKLH---IIDLSNN-RFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTY 245 (456)
Q Consensus 170 L~~n~l~~~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (456)
+++|++++++. + ..+++|+ +|++++| .++ .++...|..
T Consensus 112 l~~n~l~~lp~--~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~--------------------------------- 153 (239)
T 2xwt_C 112 IFNTGLKMFPD--L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQG--------------------------------- 153 (239)
T ss_dssp EEEECCCSCCC--C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------------------------------
T ss_pred CCCCCCccccc--c--ccccccccccEEECCCCcchh-hcCcccccc---------------------------------
Confidence 66666555322 2 3444444 5666655 554 333222222
Q ss_pred cceeEeeccCccccccccccccc-EEEccCCCCCccCchhhhccCCCCeEeCCCcc-ccccCCccccCC-CCCCeeeCCC
Q 038396 246 DYSLIMNSKGRMMTYNKIPDILT-GIILSSNRFDRVIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNL-TNLESLDLSN 322 (456)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~ 322 (456)
++.|+ +|++++|.++.+.+..+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++
T Consensus 154 ------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 154 ------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 12244 5555555555433333443 566666666663 665555566666 6666666666
Q ss_pred CcccccCchhhhcCCCCCEEeccCC
Q 038396 323 NRFSGQIPQQLVEFTFLEFFDVSDN 347 (456)
Q Consensus 323 N~l~~~~~~~l~~l~~L~~L~ls~N 347 (456)
|++++ +|.. .+++|+.|+++++
T Consensus 215 N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCCC-CCCT--TCTTCSEEECTTC
T ss_pred Ccccc-CChh--HhccCceeeccCc
Confidence 66663 3332 4556666666655
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=2.4e-26 Score=219.16 Aligned_cols=109 Identities=23% Similarity=0.211 Sum_probs=48.6
Q ss_pred CCcEEEccCCccccccc----hhhhcCC-CCCeeecccCcCccccChhhhhC-----CCCCcEEEccCCccceeCCccc-
Q 038396 43 ETILYLVSNNSLTGEIP----SWICNLN-TVKNLVLSHNNLSGVLPQCLGNF-----SDELSVLDLQGNNFFGTIPDTF- 111 (456)
Q Consensus 43 ~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~~L~~L~Ls~n~i~~~~~~~~- 111 (456)
+|++|++++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ . +|++|++++|.+++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHHHHH
Confidence 35555555555554433 4444444 45555555555544434444332 3 45555555555543333322
Q ss_pred ---cCC-CCccEEeccCCcCcccCCcccc----C-CCCCcEEeCcCCcCC
Q 038396 112 ---IKE-SRLGVIDLSHNLFQGRIPRSLV----N-CSKLEFLDLGNNQIS 152 (456)
Q Consensus 112 ---~~l-~~L~~L~Ls~N~l~~~~~~~l~----~-l~~L~~L~Ls~n~i~ 152 (456)
..+ ++|++|++++|++++..+..+. . .++|++|++++|.++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 222 4455555555554433332221 1 134555555555444
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.4e-24 Score=193.05 Aligned_cols=197 Identities=19% Similarity=0.279 Sum_probs=129.9
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCc-cceeCCccccCCCCccEEeccC-CcCcccCCccccCCCCCcEE
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN-FFGTIPDTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEFL 144 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L 144 (456)
+|++|++++|++++..+..+..++ +|++|++++|. ++.+.+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666666644444555555 66666666665 6655555666666666677666 66665555666666677777
Q ss_pred eCcCCcCCcCCCccccCCCCCC---EEEccCC-cccccCCCCCCccCCCCcc-EEecccccCcCCCChhhhhCccccccc
Q 038396 145 DLGNNQISDTFPSWLGTIPNLN---VLILRSN-KFYGIIKEPRTDCRFSKLH-IIDLSNNRFTGKLPSKSFLCLDAMKIV 219 (456)
Q Consensus 145 ~Ls~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~~~l~~l~~l 219 (456)
++++|.+++ +|. +..+++|+ +|++++| .++++.+..+ ..+++|+ +|++++|.++ .+|...+..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~~~~~------- 178 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGYAFNG------- 178 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTTTTTT-------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHhhcCC-------
Confidence 777776664 444 66666666 7777777 6666655444 5667777 7777777776 555332211
Q ss_pred cccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCC-CCccCchhhhcc-CCCCeEeCC
Q 038396 220 NTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNR-FDRVIPTSIANL-KGLQVLNLD 297 (456)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~L~ 297 (456)
.+|++|++++|. +++..+..|..+ ++|+.|+++
T Consensus 179 ---------------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 179 ---------------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp ---------------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred ---------------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 237777788884 777777778888 889999999
Q ss_pred CccccccCCccccCCCCCCeeeCCCCc
Q 038396 298 NNNLQGHIPSCLGNLTNLESLDLSNNR 324 (456)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 324 (456)
+|++++ +|.. .+++|+.|+++++.
T Consensus 214 ~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 214 QTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCcccc-CChh--HhccCceeeccCcc
Confidence 999884 4443 56788888888763
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=7.3e-24 Score=191.32 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=162.7
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
...++++++++.++ .+|.. .+.++.|++++|.+++..+..|.++++|++|++++|.+++..+..+..+. +|
T Consensus 14 ~~~~~l~~~~~~l~-------~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-------SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-EL 85 (251)
T ss_dssp GGGTEEECTTCCCS-------SCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TC
T ss_pred CCCeEEecCCCCcc-------ccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cC
Confidence 45789999999987 45543 57899999999999988888999999999999999999977777788888 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 99999999999888888999999999999999999777777899999999999999999877778999999999999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCC
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGK 204 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 204 (456)
++++..+..+ ..+++|++|++++|++.+.
T Consensus 166 ~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPHGAF--DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCTTTT--TTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHH--hCCCCCCEEEeeCCceeCC
Confidence 9998877666 7889999999999999854
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.9e-24 Score=193.10 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=121.2
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR 171 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 171 (456)
..++++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566677776666 4444443 466666666666666555566666666666666666665555556666666666666
Q ss_pred CCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396 172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM 251 (456)
Q Consensus 172 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (456)
+|++++..+..+ ..+++|
T Consensus 92 ~n~l~~~~~~~~--~~l~~L------------------------------------------------------------ 109 (251)
T 3m19_A 92 NNQLASLPLGVF--DHLTQL------------------------------------------------------------ 109 (251)
T ss_dssp TSCCCCCCTTTT--TTCTTC------------------------------------------------------------
T ss_pred CCcccccChhHh--cccCCC------------------------------------------------------------
Confidence 666655443333 344444
Q ss_pred eccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCch
Q 038396 252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQ 331 (456)
Q Consensus 252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 331 (456)
++|+|++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+.
T Consensus 110 ----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 110 ----------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp ----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 4455555555554555567778888888888888866666788888888888888888866666
Q ss_pred hhhcCCCCCEEeccCCcCcccCC
Q 038396 332 QLVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 332 ~l~~l~~L~~L~ls~N~l~~~~p 354 (456)
.+..+++|+.|++++|++++..+
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTTST
T ss_pred HHhCCCCCCEEEeeCCceeCCcc
Confidence 78888888888888888887633
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.1e-26 Score=221.73 Aligned_cols=249 Identities=18% Similarity=0.230 Sum_probs=143.4
Q ss_pred cchhhhcCCCCCeeecccCcCccccChh----hhhCCCCCcEEEccCCcc---ceeCCccc-------cCCCCccEEecc
Q 038396 58 IPSWICNLNTVKNLVLSHNNLSGVLPQC----LGNFSDELSVLDLQGNNF---FGTIPDTF-------IKESRLGVIDLS 123 (456)
Q Consensus 58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~~L~~L~Ls~n~i---~~~~~~~~-------~~l~~L~~L~Ls 123 (456)
++..+..+++|++|+|++|.+++..+.. +..++ +|++|++++|.+ ++.+|..+ ..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4445555666666666666665433222 33444 566666666432 22233322 455666666666
Q ss_pred CCcCcc----cCCccccCCCCCcEEeCcCCcCCcCCCcccc----CC---------CCCCEEEccCCcccccCCCC--CC
Q 038396 124 HNLFQG----RIPRSLVNCSKLEFLDLGNNQISDTFPSWLG----TI---------PNLNVLILRSNKFYGIIKEP--RT 184 (456)
Q Consensus 124 ~N~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~l~~~~~~~--~~ 184 (456)
+|++++ .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++...... ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666664 2455566666666666666666533222222 22 56666666666664211000 01
Q ss_pred ccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCccccccccc
Q 038396 185 DCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIP 264 (456)
Q Consensus 185 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (456)
+..+++|++|++++|.++..-...... .....+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~-----------------------------------------------~~l~~~ 215 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLL-----------------------------------------------EGLAYC 215 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHH-----------------------------------------------TTGGGC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHH-----------------------------------------------HHhhcC
Confidence 134556666666666654100000000 000013
Q ss_pred ccccEEEccCCCCC----ccCchhhhccCCCCeEeCCCcccccc----CCccccC--CCCCCeeeCCCCcccc----cCc
Q 038396 265 DILTGIILSSNRFD----RVIPTSIANLKGLQVLNLDNNNLQGH----IPSCLGN--LTNLESLDLSNNRFSG----QIP 330 (456)
Q Consensus 265 ~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~--l~~L~~L~Ls~N~l~~----~~~ 330 (456)
++|+.|+|++|.++ ..+|..+..+++|+.|+|++|++++. ++..+.. +++|++|+|++|.+++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 44777777777775 44566777888888888888888755 4555533 7888888888888886 367
Q ss_pred hhh-hcCCCCCEEeccCCcCcccCC
Q 038396 331 QQL-VEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 331 ~~l-~~l~~L~~L~ls~N~l~~~~p 354 (456)
..+ .++++|++|++++|++++..|
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhcCCCceEEEccCCcCCcchh
Confidence 666 567888888888888886654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=7.4e-26 Score=215.83 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=172.2
Q ss_pred EEEccCCccccccchhhhcCCCCCeeecccCcCccccC----hhhhhCCCCCcEEEccCCccceeCCccccCC-----CC
Q 038396 46 LYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP----QCLGNFSDELSVLDLQGNNFFGTIPDTFIKE-----SR 116 (456)
Q Consensus 46 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l-----~~ 116 (456)
.+.+++|.+++.+|..+...++|++|++++|.+++..+ ..+..++++|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888888888777777779999999998885555 5566665468899999998887666666664 88
Q ss_pred ccEEeccCCcCcccCCcc----ccCC-CCCcEEeCcCCcCCcCCCcccc----C-CCCCCEEEccCCcccccCCCCC--C
Q 038396 117 LGVIDLSHNLFQGRIPRS----LVNC-SKLEFLDLGNNQISDTFPSWLG----T-IPNLNVLILRSNKFYGIIKEPR--T 184 (456)
Q Consensus 117 L~~L~Ls~N~l~~~~~~~----l~~l-~~L~~L~Ls~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~--~ 184 (456)
|++|++++|++++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.+.....+ .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 899999999888665554 3344 7899999999988866554433 3 3588999999988874322111 0
Q ss_pred ccCCC-CccEEecccccCcCCCChhhhhCc-cccccccccCccccccccCCCCCccccccccccceeEeeccCccccccc
Q 038396 185 DCRFS-KLHIIDLSNNRFTGKLPSKSFLCL-DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNK 262 (456)
Q Consensus 185 ~~~l~-~L~~L~ls~n~l~~~~~~~~~~~l-~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (456)
+..++ +|++|++++|.+++..+ ..+... ..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~----------------------------------------------- 193 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNC-AELAKFLAS----------------------------------------------- 193 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHT-----------------------------------------------
T ss_pred HhcCCccccEeeecCCCCchhhH-HHHHHHHHh-----------------------------------------------
Confidence 12333 88899999988874333 222111 00
Q ss_pred ccccccEEEccCCCCCccC----chhhhc-cCCCCeEeCCCccccccCC----ccccCCCCCCeeeCCCCccccc-----
Q 038396 263 IPDILTGIILSSNRFDRVI----PTSIAN-LKGLQVLNLDNNNLQGHIP----SCLGNLTNLESLDLSNNRFSGQ----- 328 (456)
Q Consensus 263 ~~~~L~~L~Ls~n~l~~~~----~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~~----- 328 (456)
.+.+|++|+|++|.+++.. +..+.. .++|++|+|++|++++..+ ..+..+++|++|+|++|.+.+.
T Consensus 194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 0134777777777776632 333444 3478888888887775443 2345667788888888774422
Q ss_pred --CchhhhcCCCCCEEeccCCcCccc
Q 038396 329 --IPQQLVEFTFLEFFDVSDNYLTGA 352 (456)
Q Consensus 329 --~~~~l~~l~~L~~L~ls~N~l~~~ 352 (456)
++..+..+++|+.||+++|++...
T Consensus 274 ~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHhccCCceEEEecCCCcCCCc
Confidence 223455667777888888877655
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.8e-23 Score=194.58 Aligned_cols=79 Identities=27% Similarity=0.405 Sum_probs=47.2
Q ss_pred ccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccC
Q 038396 267 LTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSD 346 (456)
Q Consensus 267 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~ 346 (456)
|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++
T Consensus 153 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (308)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred ccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccC
Confidence 5555555555555322 5566666666666666663322 566666666666666666433 256666666666666
Q ss_pred CcCcc
Q 038396 347 NYLTG 351 (456)
Q Consensus 347 N~l~~ 351 (456)
|++++
T Consensus 227 N~i~~ 231 (308)
T 1h6u_A 227 QTITN 231 (308)
T ss_dssp EEEEC
T ss_pred Ceeec
Confidence 66654
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=1.3e-23 Score=199.30 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=129.4
Q ss_pred CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccCh-hhhhCCCCCc-
Q 038396 18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQ-CLGNFSDELS- 94 (456)
Q Consensus 18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~~L~- 94 (456)
++++.++++++ .+|.. +++++.|+|++|+|+.+.+++|.++++|++|+|++|++.+.+|. +|.+++ +++
T Consensus 12 ~~v~C~~~~Lt-------~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVT-------EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHE 83 (350)
T ss_dssp TEEEEESTTCC-------SCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCE
T ss_pred CEEEecCCCCC-------ccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhh
Confidence 67888888887 55654 46788888888888866666788888888888888887655554 456666 454
Q ss_pred EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC-CcCCcCCCccccCCC-CCCEEEccC
Q 038396 95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTIP-NLNVLILRS 172 (456)
Q Consensus 95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~-~L~~L~L~~ 172 (456)
.+.+++|+++.+.|..|..+++|++|++++|++++..+..+....++..|++.+ +.+....+..|..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 466677888877778888888888888888888866666666667777787754 566655555666554 577788888
Q ss_pred CcccccCCCCCCccCCCCccEEeccc-ccCcCCCChhhhhCcc
Q 038396 173 NKFYGIIKEPRTDCRFSKLHIIDLSN-NRFTGKLPSKSFLCLD 214 (456)
Q Consensus 173 n~l~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~l~ 214 (456)
|+++.+.+..+ ...+|+++++++ |.++ .+|...|..++
T Consensus 164 N~i~~i~~~~f---~~~~L~~l~l~~~n~l~-~i~~~~f~~l~ 202 (350)
T 4ay9_X 164 NGIQEIHNSAF---NGTQLDELNLSDNNNLE-ELPNDVFHGAS 202 (350)
T ss_dssp SCCCEECTTSS---TTEEEEEEECTTCTTCC-CCCTTTTTTEE
T ss_pred ccccCCChhhc---cccchhHHhhccCCccc-CCCHHHhccCc
Confidence 88777655444 335677777764 4444 66655454443
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=4.2e-25 Score=208.60 Aligned_cols=251 Identities=17% Similarity=0.123 Sum_probs=166.7
Q ss_pred CCcEEEccCCccccccchhhhcC--CCCCeeecccCcCccccChhhhhCCCCCcEEEccCCcccee-CCccccCCCCccE
Q 038396 43 ETILYLVSNNSLTGEIPSWICNL--NTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGT-IPDTFIKESRLGV 119 (456)
Q Consensus 43 ~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 119 (456)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..++ +|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4667777777665 3455555 7777777777777755444 44555 777788877777654 5666777777777
Q ss_pred EeccCCcCcccCCccccCCCCCcEEeCcCC-cCCcC-CCccccCCCCCCEEEccCC-ccccc-CCCCCCccCCC-CccEE
Q 038396 120 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNN-QISDT-FPSWLGTIPNLNVLILRSN-KFYGI-IKEPRTDCRFS-KLHII 194 (456)
Q Consensus 120 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~L 194 (456)
|++++|++++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+ ..++ +|++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~~L~~L 200 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHVSETITQL 200 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--HhcccCCCEE
Confidence 888777777666677777777788887777 56542 4555667777777777777 66542 11112 4566 77777
Q ss_pred eccccc--Cc-CCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEE
Q 038396 195 DLSNNR--FT-GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGII 271 (456)
Q Consensus 195 ~ls~n~--l~-~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 271 (456)
++++|. ++ +.++. .+. .+++|++|+
T Consensus 201 ~l~~~~~~~~~~~l~~-~~~---------------------------------------------------~~~~L~~L~ 228 (336)
T 2ast_B 201 NLSGYRKNLQKSDLST-LVR---------------------------------------------------RCPNLVHLD 228 (336)
T ss_dssp ECCSCGGGSCHHHHHH-HHH---------------------------------------------------HCTTCSEEE
T ss_pred EeCCCcccCCHHHHHH-HHh---------------------------------------------------hCCCCCEEe
Confidence 777773 32 01110 000 134588888
Q ss_pred ccCCC-CCccCchhhhccCCCCeEeCCCcc-ccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcC
Q 038396 272 LSSNR-FDRVIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYL 349 (456)
Q Consensus 272 Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l 349 (456)
+++|. +++..+..+..+++|+.|++++|. ++......+..+++|++|++++| ++...-..+. ..+..|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 88888 666667788888999999999984 33333336778899999999988 5432222222 2366667899999
Q ss_pred cccCCC
Q 038396 350 TGAIPL 355 (456)
Q Consensus 350 ~~~~p~ 355 (456)
++..|.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 887774
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.1e-25 Score=212.76 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=152.7
Q ss_pred CCCCcEEEccCCccccccch----hhhcCCCCCeeecccC---cCccccChhh-------hhCCCCCcEEEccCCccce-
Q 038396 41 PPETILYLVSNNSLTGEIPS----WICNLNTVKNLVLSHN---NLSGVLPQCL-------GNFSDELSVLDLQGNNFFG- 105 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~~L~~L~Ls~n~i~~- 105 (456)
+++|+.|++++|.+++..+. .+..+++|++|+|++| .+++.+|..+ ..++ +|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHH
Confidence 45666666666666654332 3556677777777764 3333444444 4555 67777777777765
Q ss_pred ---eCCccccCCCCccEEeccCCcCcccCCcccc----CC---------CCCcEEeCcCCcCC-cCCC---ccccCCCCC
Q 038396 106 ---TIPDTFIKESRLGVIDLSHNLFQGRIPRSLV----NC---------SKLEFLDLGNNQIS-DTFP---SWLGTIPNL 165 (456)
Q Consensus 106 ---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~l---------~~L~~L~Ls~n~i~-~~~~---~~~~~l~~L 165 (456)
.++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ ...+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3555666677777777777777643333332 23 77788888887776 2233 345567778
Q ss_pred CEEEccCCcccc-----cCCCCCCccCCCCccEEecccccCcC----CCChhhhhCccccccccccCccccccccCCCCC
Q 038396 166 NVLILRSNKFYG-----IIKEPRTDCRFSKLHIIDLSNNRFTG----KLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQ 236 (456)
Q Consensus 166 ~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~ 236 (456)
++|++++|++.. ..+..+ ..+++|++|++++|.++. .+|. .+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l--~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~------------------------- 241 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALAI-ALK------------------------- 241 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHHH-HGG-------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHh--hcCCCccEEECcCCCCCcHHHHHHHH-HHc-------------------------
Confidence 888888887762 112123 567788888888887751 1111 011
Q ss_pred ccccccccccceeEeeccCcccccccccccccEEEccCCCCCcc----Cchhhhc--cCCCCeEeCCCccccc----cCC
Q 038396 237 VSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRV----IPTSIAN--LKGLQVLNLDNNNLQG----HIP 306 (456)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~ 306 (456)
.+++|++|+|++|.+++. ++..+.. +++|+.|+|++|.+++ .+|
T Consensus 242 --------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 242 --------------------------SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp --------------------------GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred --------------------------cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 134588888888888765 4555533 8999999999999997 477
Q ss_pred ccc-cCCCCCCeeeCCCCcccccCc
Q 038396 307 SCL-GNLTNLESLDLSNNRFSGQIP 330 (456)
Q Consensus 307 ~~l-~~l~~L~~L~Ls~N~l~~~~~ 330 (456)
..+ .++++|++|++++|++++..+
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhcCCCceEEEccCCcCCcchh
Confidence 777 668999999999999987663
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=195.84 Aligned_cols=231 Identities=18% Similarity=0.195 Sum_probs=177.8
Q ss_pred CCCcEEEccCCccccccch---hhhcCCCCCeeecccCcCccccChhh--hhCCCCCcEEEccCCccceeCC----cccc
Q 038396 42 PETILYLVSNNSLTGEIPS---WICNLNTVKNLVLSHNNLSGVLPQCL--GNFSDELSVLDLQGNNFFGTIP----DTFI 112 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~~L~~L~Ls~n~i~~~~~----~~~~ 112 (456)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+. +|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhh
Confidence 4578888888877632111 12345779999999999998888887 7777 89999999999986544 3455
Q ss_pred CCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcC--C--CccccCCCCCCEEEccCCcccccCCCCC-CccC
Q 038396 113 KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT--F--PSWLGTIPNLNVLILRSNKFYGIIKEPR-TDCR 187 (456)
Q Consensus 113 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~ 187 (456)
.+++|++|++++|++++..+..|..+++|++|++++|++.+. . +..++.+++|++|++++|+++....... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999988888999999999999999997642 1 2334688999999999999975432211 1256
Q ss_pred CCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccc
Q 038396 188 FSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDIL 267 (456)
Q Consensus 188 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 267 (456)
+++|++|++++|.+++..|.. +..+ ..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~-~~~~------------------------------------------------~~~~~L 253 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPS-APRC------------------------------------------------MWSSAL 253 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSC-CSSC------------------------------------------------CCCTTC
T ss_pred CCCCCEEECCCCCCCccchhh-HHhc------------------------------------------------cCcCcC
Confidence 789999999999998655532 1111 013569
Q ss_pred cEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccc
Q 038396 268 TGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG 327 (456)
Q Consensus 268 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 327 (456)
++|++++|+++. +|..+. ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 254 ~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 999999999996 455553 7999999999999954 43 6888999999999999874
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=4e-23 Score=195.90 Aligned_cols=241 Identities=17% Similarity=0.187 Sum_probs=164.1
Q ss_pred cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeC-CccccCCCCccE-Eec
Q 038396 45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTI-PDTFIKESRLGV-IDL 122 (456)
Q Consensus 45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~-L~L 122 (456)
++++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.+++ +|++|+|++|++.+.+ +.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 556554 35778888888888743334577777 7888888888875444 356777777664 556
Q ss_pred cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC-CcccccCCCCCCccCC-CCccEEeccccc
Q 038396 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS-NKFYGIIKEPRTDCRF-SKLHIIDLSNNR 200 (456)
Q Consensus 123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l-~~L~~L~ls~n~ 200 (456)
++|++++..|..|..+++|++|++++|.++...+..+....++..|++.+ +++..+....+ ..+ ..++.|++++|.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNG 165 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhcccccc
Confidence 66788777777788888888888888888766555555666677777754 55665554444 333 357778888887
Q ss_pred CcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccC-CCCCc
Q 038396 201 FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSS-NRFDR 279 (456)
Q Consensus 201 l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~ 279 (456)
++ .++...|. ..+|++|++++ |.++.
T Consensus 166 i~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 166 IQ-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLEE 192 (350)
T ss_dssp CC-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCCC
T ss_pred cc-CCChhhcc----------------------------------------------------ccchhHHhhccCCcccC
Confidence 76 55543221 12377888874 67777
Q ss_pred cCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCc
Q 038396 280 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNY 348 (456)
Q Consensus 280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~ 348 (456)
+.+..|..+++|++|+|++|+|+...+..|. +|+.|.+.++.-...+|. +..+++|+.++++++.
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred CCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 6667788999999999999999855444444 555555554433336663 7888999999998654
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=4.2e-25 Score=224.94 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=47.1
Q ss_pred cccccEEEccCCC--CCccCchhhh-ccCCCCeEeCCCcccccc-CCccccCCCCCCeeeCCCCccccc-CchhhhcCCC
Q 038396 264 PDILTGIILSSNR--FDRVIPTSIA-NLKGLQVLNLDNNNLQGH-IPSCLGNLTNLESLDLSNNRFSGQ-IPQQLVEFTF 338 (456)
Q Consensus 264 ~~~L~~L~Ls~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~ 338 (456)
+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++.....+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 4556666665332 4433333332 256666666666666542 233345566666666666665533 2333345666
Q ss_pred CCEEeccCCcCcc
Q 038396 339 LEFFDVSDNYLTG 351 (456)
Q Consensus 339 L~~L~ls~N~l~~ 351 (456)
|++|++++|+++.
T Consensus 515 L~~L~ls~n~it~ 527 (592)
T 3ogk_B 515 LRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEEESCBCCT
T ss_pred cCeeECcCCcCCH
Confidence 6666666666553
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.8e-22 Score=185.52 Aligned_cols=193 Identities=23% Similarity=0.311 Sum_probs=163.4
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN 88 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 88 (456)
+.+ +++|++|++++|.++....+ ..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 37 ~~~--l~~L~~L~l~~~~i~~l~~~-----~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~ 105 (308)
T 1h6u_A 37 QAD--LDGITTLSAFGTGVTTIEGV-----QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAG 105 (308)
T ss_dssp HHH--HHTCCEEECTTSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTT
T ss_pred HHH--cCCcCEEEeeCCCccCchhh-----hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcC
Confidence 445 78999999999999832221 127899999999999996544 9999999999999999984 44 6888
Q ss_pred CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396 89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168 (456)
Q Consensus 89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 168 (456)
++ +|++|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 106 l~-~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 178 (308)
T 1h6u_A 106 LQ-SIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178 (308)
T ss_dssp CT-TCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CC-CCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEE
Confidence 88 899999999999864 3 38899999999999999995543 8899999999999999986433 8999999999
Q ss_pred EccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++++|++++..+ +..+++|++|++++|.++ .++. +..+++|+.+++++|.+
T Consensus 179 ~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 179 KADDNKISDISP----LASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ECCSSCCCCCGG----GGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEEEEEE
T ss_pred ECCCCccCcChh----hcCCCCCCEEEccCCccC-cccc--ccCCCCCCEEEccCCee
Confidence 999999987754 378999999999999998 4442 78899999999998876
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=5.3e-22 Score=173.79 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=153.1
Q ss_pred CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
-+.++.+++.++ .+|.. .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+. +|++
T Consensus 9 ~~~v~c~~~~l~-------~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~ 80 (208)
T 2o6s_A 9 GTTVECYSQGRT-------SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTY 80 (208)
T ss_dssp TTEEECCSSCCS-------SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred CCEEEecCCCcc-------CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCE
Confidence 467899999887 44543 67899999999999987777899999999999999999965555677887 8999
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 99999999977777789999999999999999977777789999999999999999977777789999999999999976
Q ss_pred cccCCCCCCccCCCCccEEecccccCcCCCChh
Q 038396 176 YGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK 208 (456)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 208 (456)
. +.+++|++|+++.|.++|.+|..
T Consensus 161 ~---------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 161 D---------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp C---------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred e---------cCCCCHHHHHHHHHhCCceeecc
Confidence 5 34678999999999999988853
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.4e-23 Score=196.49 Aligned_cols=255 Identities=18% Similarity=0.197 Sum_probs=191.5
Q ss_pred CCCCEEEccCCCCCCCCcCccCCCCCC--CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccc-cChhhhhCCC
Q 038396 15 QYLNALNLSHNLLTSSNNLQGPLPVPP--PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGV-LPQCLGNFSD 91 (456)
Q Consensus 15 ~~L~~L~Ls~N~l~~~~~l~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~ 91 (456)
..++.+|+++|.+.. .....+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..++
T Consensus 47 ~~~~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~- 118 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS- 118 (336)
T ss_dssp TTSSEEECTTCBCCH------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-
T ss_pred hhheeeccccccCCH------HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC-
Confidence 348899999998751 111112 7899999999999977665 56799999999999999865 777788887
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCC-cCccc-CCccccCCCCCcEEeCcCC-cCCcC-CCccccCCC-CCC
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN-LFQGR-IPRSLVNCSKLEFLDLGNN-QISDT-FPSWLGTIP-NLN 166 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~-~L~ 166 (456)
+|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 8999999999998888888999999999999999 67753 6667888999999999999 88854 566778899 999
Q ss_pred EEEccCCc--cc-ccCCCCCCccCCCCccEEeccccc-CcCCCChhhhhCccccccccccCccccccccCCCCCcccccc
Q 038396 167 VLILRSNK--FY-GIIKEPRTDCRFSKLHIIDLSNNR-FTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLI 242 (456)
Q Consensus 167 ~L~L~~n~--l~-~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 242 (456)
+|++++|. ++ +..+.. +..+++|++|++++|. +++..+. .+..
T Consensus 199 ~L~l~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~l~~------------------------------ 245 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSDSVMLKNDCFQ-EFFQ------------------------------ 245 (336)
T ss_dssp EEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTTCTTCCGGGGG-GGGG------------------------------
T ss_pred EEEeCCCcccCCHHHHHHH--HhhCCCCCEEeCCCCCcCCHHHHH-HHhC------------------------------
Confidence 99999994 43 111222 2568999999999998 5533221 1222
Q ss_pred ccccceeEeeccCcccccccccccccEEEccCCC-CCccCchhhhccCCCCeEeCCCccccccCCccccCC-CCCCeeeC
Q 038396 243 STYDYSLIMNSKGRMMTYNKIPDILTGIILSSNR-FDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TNLESLDL 320 (456)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L 320 (456)
+++|++|++++|. +.......+..+++|+.|++++| ++.. .+..+ ..+..|++
T Consensus 246 ---------------------l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l 300 (336)
T 2ast_B 246 ---------------------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQI 300 (336)
T ss_dssp ---------------------CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEE
T ss_pred ---------------------CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEE
Confidence 2458888888884 33222235778899999999998 4422 33333 24777788
Q ss_pred CCCcccccCchhhhc
Q 038396 321 SNNRFSGQIPQQLVE 335 (456)
Q Consensus 321 s~N~l~~~~~~~l~~ 335 (456)
++|++++..|..+..
T Consensus 301 ~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 301 NCSHFTTIARPTIGN 315 (336)
T ss_dssp SCCCSCCTTCSSCSS
T ss_pred ecccCccccCCcccc
Confidence 999999888776654
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-21 Score=171.87 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=65.5
Q ss_pred eeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCC
Q 038396 70 NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 149 (456)
Q Consensus 70 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n 149 (456)
.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3444444444 3333221 14555555555555444444555555555555555555444444555555555555555
Q ss_pred cCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396 150 QISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 150 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 202 (456)
.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccc
Confidence 5554444445555555555555555555443333 44555555666555555
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=2.5e-24 Score=219.21 Aligned_cols=108 Identities=12% Similarity=0.061 Sum_probs=74.6
Q ss_pred cccccEEEcc----CCCCCcc-----CchhhhccCCCCeEeCCCcc--ccccCCcccc-CCCCCCeeeCCCCcccc-cCc
Q 038396 264 PDILTGIILS----SNRFDRV-----IPTSIANLKGLQVLNLDNNN--LQGHIPSCLG-NLTNLESLDLSNNRFSG-QIP 330 (456)
Q Consensus 264 ~~~L~~L~Ls----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~Ls~N~l~~-~~~ 330 (456)
+++|+.|+++ .|.+++. .+..+..+++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5567777775 5666653 22335667888888886543 5555444444 47889999999999876 345
Q ss_pred hhhhcCCCCCEEeccCCcCcccC-CC-CCCCCCCCCcccCCCC
Q 038396 331 QQLVEFTFLEFFDVSDNYLTGAI-PL-GKQFATFDNTSFDGNS 371 (456)
Q Consensus 331 ~~l~~l~~L~~L~ls~N~l~~~~-p~-~~~~~~l~~~~~~~n~ 371 (456)
..+..+++|++|++++|++++.. +. ...++.++.+++.+|.
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 55678899999999999986542 21 1346678888888887
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=168.74 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=72.1
Q ss_pred CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccc-hhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIP-SWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
+.+++++|.++ .+|.. ...++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+. +|++
T Consensus 14 ~~l~~s~n~l~-------~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLN-------KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNE 85 (220)
T ss_dssp TEEECCSSCCS-------SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCE
T ss_pred CEeEeCCCCcc-------cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCE
Confidence 45566665554 23332 2344555555555554322 2344555555555555555433333444444 4555
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 55555555444444444445555555555554444444444444444444444444444444444444444444444444
Q ss_pred c
Q 038396 176 Y 176 (456)
Q Consensus 176 ~ 176 (456)
.
T Consensus 166 ~ 166 (220)
T 2v70_A 166 N 166 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=5.3e-21 Score=190.75 Aligned_cols=187 Identities=25% Similarity=0.412 Sum_probs=98.4
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
+|+.|++++|.+++ +|..+. + +|++|++++|.|+ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 56666666666653 444332 2 5666666666665 334 234556666666666654 443 433 5666666
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRY 226 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~ 226 (456)
++|.+++ +|. .+++|+.|++++|++++++. .+++|++|++++|.++ .+|. +
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~-~lp~--l---------------- 178 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLT-FLPE--L---------------- 178 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-CCCC--C----------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCC-Ccch--h----------------
Confidence 6666654 333 45556666666666554322 2345556666665555 2331 0
Q ss_pred cccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCC-------CeEeCCCc
Q 038396 227 LQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGL-------QVLNLDNN 299 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~L~~n 299 (456)
.++|+.|+|++|.++. +|. +.. +| +.|+|++|
T Consensus 179 -------------------------------------~~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 179 -------------------------------------PESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp -------------------------------------CTTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSS
T ss_pred -------------------------------------hCCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCC
Confidence 0225566666666654 232 332 44 66666666
Q ss_pred cccccCCccccCCCCCCeeeCCCCcccccCchhhhcC
Q 038396 300 NLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEF 336 (456)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l 336 (456)
+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 666 455555556666666666666665555555443
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=7.4e-21 Score=167.73 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=86.7
Q ss_pred CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEE
Q 038396 18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVL 96 (456)
Q Consensus 18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 96 (456)
+.++++++.++ .+|.. .+.++.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+. +|++|
T Consensus 14 ~~v~c~~~~l~-------~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLT-------EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSL 85 (220)
T ss_dssp TEEECTTSCCS-------SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEE
T ss_pred CEEEcCCCCcC-------cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEE
Confidence 45666666665 33332 34566666666666655555566666666666666666655555555555 56666
Q ss_pred EccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCccc
Q 038396 97 DLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 97 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 176 (456)
+|++|.++...+..|.++++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666665444444555566666666666665555555555555666666655555544445555555555555555543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.3e-21 Score=192.23 Aligned_cols=181 Identities=24% Similarity=0.414 Sum_probs=129.2
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEcc
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILR 171 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 171 (456)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 68888888888875 55544 267888888888887 555 346788888888888875 555 544 78888888
Q ss_pred CCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEe
Q 038396 172 SNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIM 251 (456)
Q Consensus 172 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (456)
+|++++++. .+++|+.|++++|.++ .+|.
T Consensus 129 ~N~l~~lp~------~l~~L~~L~Ls~N~l~-~lp~-------------------------------------------- 157 (571)
T 3cvr_A 129 NNQLTMLPE------LPALLEYINADNNQLT-MLPE-------------------------------------------- 157 (571)
T ss_dssp SSCCSCCCC------CCTTCCEEECCSSCCS-CCCC--------------------------------------------
T ss_pred CCcCCCCCC------cCccccEEeCCCCccC-cCCC--------------------------------------------
Confidence 888877533 3577888888888877 3442
Q ss_pred eccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCC-------CeeeCCCCc
Q 038396 252 NSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL-------ESLDLSNNR 324 (456)
Q Consensus 252 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~Ls~N~ 324 (456)
.+++|++|+|++|.+++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+
T Consensus 158 -----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 158 -----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp -----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred -----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 02447788888888877 444 44 78888888888887 5555 543 66 888888888
Q ss_pred ccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396 325 FSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 325 l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 354 (456)
|+ .+|..+..+++|+.|++++|++++.+|
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 87 577777778888888888888877665
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=2.8e-21 Score=183.88 Aligned_cols=176 Identities=26% Similarity=0.276 Sum_probs=134.2
Q ss_pred CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhh-cCCCCCeeecccCcCccccChhhhhCCCCCc
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWIC-NLNTVKNLVLSHNNLSGVLPQCLGNFSDELS 94 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~ 94 (456)
-+.+++++++++ .+|.. ...++.|++++|+|++..+..|. ++++|++|+|++|.+++..+..|..++ +|+
T Consensus 20 ~~~l~c~~~~l~-------~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLP-------NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLR 91 (361)
T ss_dssp TTEEECCSSCCS-------SCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCC
T ss_pred CCEEEeCCCCcC-------ccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCC
Confidence 467888888887 45544 45688888888888877777776 888888888888888866666788877 788
Q ss_pred EEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccc---cCCCCCCEEEcc
Q 038396 95 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL---GTIPNLNVLILR 171 (456)
Q Consensus 95 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~ 171 (456)
+|+|++|+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..| ..+++|+.|+|+
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 88888888887777778888888888888888887778888888888888888888885544444 467888888888
Q ss_pred CCcccccCCCCCCccCCCC--ccEEecccccCc
Q 038396 172 SNKFYGIIKEPRTDCRFSK--LHIIDLSNNRFT 202 (456)
Q Consensus 172 ~n~l~~~~~~~~~~~~l~~--L~~L~ls~n~l~ 202 (456)
+|+++++....+ ..++. ++.|++++|++.
T Consensus 172 ~N~l~~l~~~~~--~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDL--QKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHH--HHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHh--hhccHhhcceEEecCCCcc
Confidence 888876643333 44554 377888888776
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.3e-20 Score=173.70 Aligned_cols=176 Identities=22% Similarity=0.338 Sum_probs=144.9
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhh
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN 88 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 88 (456)
+.. +++|++|++++|.+++...+ ..+++|+.|++++|++++..+ +..+++|++|++++|.+++ ++ .+..
T Consensus 42 ~~~--l~~L~~L~l~~~~i~~~~~~-----~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 42 QNE--LNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HHH--HHTCCEEECTTSCCCCCTTG-----GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred hhh--cCcccEEEccCCCcccChhH-----hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence 445 78899999999998733221 227899999999999996544 8899999999999999984 44 4788
Q ss_pred CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEE
Q 038396 89 FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVL 168 (456)
Q Consensus 89 l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 168 (456)
++ +|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 111 l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 111 LK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 87 899999999999864 4688899999999999999854 578899999999999999986544 8899999999
Q ss_pred EccCCcccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396 169 ILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS 207 (456)
Q Consensus 169 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 207 (456)
++++|.++++. .+ ..+++|+.|++++|+++ ..|.
T Consensus 184 ~L~~N~i~~l~--~l--~~l~~L~~L~l~~n~i~-~~~~ 217 (291)
T 1h6t_A 184 YLSKNHISDLR--AL--AGLKNLDVLELFSQECL-NKPI 217 (291)
T ss_dssp ECCSSCCCBCG--GG--TTCTTCSEEEEEEEEEE-CCCE
T ss_pred ECCCCcCCCCh--hh--ccCCCCCEEECcCCccc-CCcc
Confidence 99999998763 23 77899999999999987 4553
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.4e-20 Score=179.11 Aligned_cols=154 Identities=26% Similarity=0.269 Sum_probs=73.5
Q ss_pred cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh-hCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396 45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG-NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123 (456)
Q Consensus 45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 123 (456)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+. +|++|+|++|.|+++.+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555 2333222 2345555555555533333333 444 45555555555554444455555555555555
Q ss_pred CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCc-cCCCCccEEecccccCc
Q 038396 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTD-CRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~ls~n~l~ 202 (456)
+|++++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|++++++...+.. ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 55555444444555555555555555555444445555555555555555554433222110 23444444444444444
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=2.7e-20 Score=164.17 Aligned_cols=154 Identities=23% Similarity=0.284 Sum_probs=135.1
Q ss_pred CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEecc
Q 038396 44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLS 123 (456)
Q Consensus 44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 123 (456)
-+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+. +|++|++++|.+++..|..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 367899999998 5565544 6899999999999966666788888 89999999999998889999999999999999
Q ss_pred CCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcC
Q 038396 124 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTG 203 (456)
Q Consensus 124 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 203 (456)
+|++++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..+ ..+++|++|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCC
Confidence 999997766778999999999999999998888899999999999999999998877666 778999999999999874
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=163.37 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=140.4
Q ss_pred CcEEEccCCccccccchhhhcCCCCCeeecccCcCccccC-hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEec
Q 038396 44 TILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLP-QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDL 122 (456)
Q Consensus 44 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 122 (456)
-+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..++ +|++|++++|.|++..+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 468999999998 4666553 467899999999996645 3477888 8999999999999888889999999999999
Q ss_pred cCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396 123 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 123 s~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 202 (456)
++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+ ..+++|++|++++|.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCc
Confidence 9999998888889999999999999999998889999999999999999999999877777 78999999999999998
Q ss_pred CCCChh
Q 038396 203 GKLPSK 208 (456)
Q Consensus 203 ~~~~~~ 208 (456)
+..+..
T Consensus 167 c~c~l~ 172 (220)
T 2v70_A 167 CNCYLA 172 (220)
T ss_dssp CSGGGH
T ss_pred CCCchH
Confidence 655533
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=5.5e-20 Score=163.27 Aligned_cols=151 Identities=20% Similarity=0.269 Sum_probs=76.6
Q ss_pred CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
.+.++.+++.++ .+|.. .++|+.|++++|.+++..|..|..+++|++|+|++|.++...+..|..++ +|++
T Consensus 21 ~~~v~c~~~~l~-------~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHA-------SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTV 92 (229)
T ss_dssp TTEEECTTSCCS-------SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred CCEeEccCCCcC-------ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCE
Confidence 345555555554 33332 34555555555555555555555555555555555555432223344444 5555
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 555555555444444455555555555555555 4444455555555555555555544334444455555555555544
Q ss_pred c
Q 038396 176 Y 176 (456)
Q Consensus 176 ~ 176 (456)
.
T Consensus 172 ~ 172 (229)
T 3e6j_A 172 D 172 (229)
T ss_dssp C
T ss_pred c
Confidence 3
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.5e-20 Score=173.29 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396 68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 147 (456)
Q Consensus 68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 147 (456)
+..+.+..+.+++..+ +..+. +|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~-~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHH-TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccccc--hhhcC-cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 4444555666553322 23455 677777777777643 3 36666777777777777764333 6667777777777
Q ss_pred CCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396 148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 202 (456)
+|.+++. ..+..+++|++|++++|++.+.. .+ ..+++|+.|++++|.++
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~~--~l--~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNNKIT 147 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCCG--GG--GGCTTCCEEECCSSCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCCh--hh--cCCCCCCEEEccCCcCC
Confidence 7776642 23566666666666666665431 11 44455555555555544
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=2.4e-22 Score=204.60 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=61.9
Q ss_pred cccccEEEccCCCCCccCchhhhc-cCCCCeEeCCCccccccCCccc-cCCCCCCeeeCCCCcccccCch-hhhcCCCCC
Q 038396 264 PDILTGIILSSNRFDRVIPTSIAN-LKGLQVLNLDNNNLQGHIPSCL-GNLTNLESLDLSNNRFSGQIPQ-QLVEFTFLE 340 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~ 340 (456)
+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 46788888877 666554555554 7888888888888876555555 5688888888888888644333 334578888
Q ss_pred EEeccCCcCc
Q 038396 341 FFDVSDNYLT 350 (456)
Q Consensus 341 ~L~ls~N~l~ 350 (456)
.|++++|+++
T Consensus 510 ~L~l~~~~~~ 519 (594)
T 2p1m_B 510 SLWMSSCSVS 519 (594)
T ss_dssp EEEEESSCCB
T ss_pred EEeeeCCCCC
Confidence 8888888874
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=6.9e-23 Score=208.60 Aligned_cols=349 Identities=13% Similarity=0.107 Sum_probs=214.5
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCC-ccccc-cchhhhcCCCCCeeecccCcCccccChhhh----
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNN-SLTGE-IPSWICNLNTVKNLVLSHNNLSGVLPQCLG---- 87 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---- 87 (456)
+++|++|+|++|.+++.. ...+...+++|+.|++++| .++.. ++..+.++++|++|++++|.+++..+..+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDC--LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHH--HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHH--HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 889999999999876210 0011112678999999988 55532 445556889999999999988765444443
Q ss_pred hCCCCCcEEEccCCc--ccee-CCccccCCCCccEEeccCC-cCcccCCccccCCCCCcEEeCcCCc-------------
Q 038396 88 NFSDELSVLDLQGNN--FFGT-IPDTFIKESRLGVIDLSHN-LFQGRIPRSLVNCSKLEFLDLGNNQ------------- 150 (456)
Q Consensus 88 ~l~~~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~n~------------- 150 (456)
.++ +|++|++++|. ++.. ++..+..+++|++|++++| .+. .++..+..+++|++|+++.+.
T Consensus 182 ~~~-~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYT-SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCC-CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCC-cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 344 79999999886 2211 1222344688999999988 333 356666677777777765442
Q ss_pred -------------CCc----CCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396 151 -------------ISD----TFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213 (456)
Q Consensus 151 -------------i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 213 (456)
+.. .++..+..+++|++|++++|.+++..... ....+++|++|++++| +...........+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-LLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH-HHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHH-HHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 111 12333335789999999999865431111 1246789999999988 4322112223356
Q ss_pred cccccccccCcc--------ccccccCCCCCccccccccccceeEeeccCcc---cccccccccccEEEcc--C----CC
Q 038396 214 DAMKIVNTSQLR--------YLQDVISPYGQVSTDLISTYDYSLIMNSKGRM---MTYNKIPDILTGIILS--S----NR 276 (456)
Q Consensus 214 ~~l~~l~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls--~----n~ 276 (456)
++|+.|++..+. .+.... ...+............ ....... ..+...+++|+.|+++ + +.
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~--l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQG--LVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHH--HHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred CCCCEEEEecCcccccccCCCCCHHH--HHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 778888773321 110000 0000000111111111 1111100 1111235789999999 4 56
Q ss_pred CCccC-----chhhhccCCCCeEeCCCccccccCCccccC-CCCCCeeeCCCCcccccCchhh-hcCCCCCEEeccCCcC
Q 038396 277 FDRVI-----PTSIANLKGLQVLNLDNNNLQGHIPSCLGN-LTNLESLDLSNNRFSGQIPQQL-VEFTFLEFFDVSDNYL 349 (456)
Q Consensus 277 l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~ls~N~l 349 (456)
+++.. +..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 66422 22367789999999987 677666666655 8999999999999976555555 6799999999999999
Q ss_pred cccCCC--CCCCCCCCCcccCCCCC
Q 038396 350 TGAIPL--GKQFATFDNTSFDGNSG 372 (456)
Q Consensus 350 ~~~~p~--~~~~~~l~~~~~~~n~~ 372 (456)
++.... ...++.++.+++.+|+.
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 643321 23466788888888764
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=9.1e-20 Score=183.82 Aligned_cols=172 Identities=23% Similarity=0.347 Sum_probs=129.1
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
+++|+.|++++|.|++...+ ..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.++ .+| .+..++ +|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l-----~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~-~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGI-----QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLK-KL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTG-----GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCT-TC
T ss_pred CCCCCEEECcCCCCCCChHH-----ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCC-CC
Confidence 77888888888887632211 127788888888888886544 778888888888888887 344 577777 78
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
++|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 8888888888753 3577788888888888888754 567888888888888888876655 778888888888888
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 206 (456)
++.++. .+ ..+++|+.|++++|.+. ..|
T Consensus 186 ~i~~l~--~l--~~l~~L~~L~L~~N~l~-~~p 213 (605)
T 1m9s_A 186 HISDLR--AL--AGLKNLDVLELFSQECL-NKP 213 (605)
T ss_dssp CCCBCG--GG--TTCTTCSEEECCSEEEE-CCC
T ss_pred CCCCCh--HH--ccCCCCCEEEccCCcCc-CCc
Confidence 887752 23 66788888888888887 444
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.9e-19 Score=159.71 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=138.0
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
..-+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..+..+. +|++|++++|.++...+..|..+++|++|+
T Consensus 19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 34678999999998 5665443 8999999999999987788888888 899999999999877777889999999999
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
+++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|+++++.+..+ ..+++|+.|++++|.+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCB
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCc
Confidence 9999999777778899999999999999998 778889999999999999999998876555 7889999999999998
Q ss_pred cCCC
Q 038396 202 TGKL 205 (456)
Q Consensus 202 ~~~~ 205 (456)
.+..
T Consensus 172 ~c~c 175 (229)
T 3e6j_A 172 DCEC 175 (229)
T ss_dssp CTTB
T ss_pred cCCc
Confidence 8543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=6.5e-20 Score=184.89 Aligned_cols=127 Identities=27% Similarity=0.419 Sum_probs=62.9
Q ss_pred hcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc
Q 038396 63 CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE 142 (456)
Q Consensus 63 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 142 (456)
..+++|+.|++++|.+. .++ .+..++ +|+.|+|++|.+++..+ +..+++|+.|+|++|++++ ++ .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 44555555555555554 232 344444 55555555555553332 4455555555555555542 22 355555555
Q ss_pred EEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCc
Q 038396 143 FLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 143 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 202 (456)
.|+|++|.+++. ..+..+++|+.|+|++|.+.++ ..+ ..+++|+.|+|++|.+.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG--GSCTTCSEEECCSSCCC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhh--cccCCCCEEECcCCcCC
Confidence 555555555432 2344555555555555555443 112 44455555555555554
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.9e-19 Score=155.92 Aligned_cols=151 Identities=18% Similarity=0.214 Sum_probs=115.0
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
+++++.|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..++ +|++|++++|.+++..+..|..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 567788888888887 445 5778888888888888775 33 3677777 78888888888887677778888888888
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCc-CCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccc
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ-ISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNN 199 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 199 (456)
++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|++++.. .+ ..+++|++|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l--~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GI--EDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TG--GGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--Hh--ccCCCCCEEEeeCc
Confidence 888888887677778888888888888887 65 344 5778888888888888887653 33 67788888888888
Q ss_pred cCc
Q 038396 200 RFT 202 (456)
Q Consensus 200 ~l~ 202 (456)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 875
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=2.1e-19 Score=155.67 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=73.1
Q ss_pred hcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc
Q 038396 63 CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE 142 (456)
Q Consensus 63 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 142 (456)
..+++|++|++++|.++ .+| .+..++ +|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34445555555555554 333 344444 45555555554431 12344555555555555555544444555555555
Q ss_pred EEeCcCCcCCcCCCccccCCCCCCEEEccCCc-ccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccc
Q 038396 143 FLDLGNNQISDTFPSWLGTIPNLNVLILRSNK-FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNT 221 (456)
Q Consensus 143 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l 221 (456)
+|++++|.+++..+..++.+++|++|++++|+ +..+. . +..+++|++|++++|.++ .++ .+..+++|+.+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~--l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~L~~L~l 188 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--P--LKTLPELKSLNIQFDGVH-DYR--GIEDFPKLNQLYA 188 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--G--GGGCSSCCEEECTTBCCC-CCT--TGGGCSSCCEEEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--h--hcCCCCCCEEECCCCCCc-ChH--HhccCCCCCEEEe
Confidence 55555555554444445555555555555554 33331 1 144455555555555554 232 2444555555555
Q ss_pred cCcc
Q 038396 222 SQLR 225 (456)
Q Consensus 222 ~~~~ 225 (456)
++|+
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 5443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.7e-19 Score=162.23 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=19.4
Q ss_pred hhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCccc
Q 038396 285 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFS 326 (456)
Q Consensus 285 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 326 (456)
+..+++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 44445555555555555433 33444445555555555444
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=2.5e-19 Score=162.46 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=137.4
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
+.++..+++++|.+++...+ ..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..++ +|
T Consensus 18 l~~l~~l~l~~~~i~~~~~~-----~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~-~L 87 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQ-----KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLT-KL 87 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECH-----HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCS-SC
T ss_pred HHHHHHHHhcCCCcccccch-----hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCC-CC
Confidence 55688888999988722111 127889999999999984 45 68889999999999999984 444 78887 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
++|++++|++++. |. +.. ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .++.+++|++|++++|
T Consensus 88 ~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 88 EELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred CEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence 9999999999854 33 233 899999999999985 33 588999999999999999865 3 6888999999999999
Q ss_pred cccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS 207 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 207 (456)
++++. ..+ ..+++|+.|++++|.++ ..|.
T Consensus 161 ~i~~~--~~l--~~l~~L~~L~l~~N~~~-~~~~ 189 (263)
T 1xeu_A 161 EITNT--GGL--TRLKKVNWIDLTGQKCV-NEPV 189 (263)
T ss_dssp CCCBC--TTS--TTCCCCCEEEEEEEEEE-CCCE
T ss_pred cCcch--HHh--ccCCCCCEEeCCCCccc-CCcc
Confidence 99887 334 77899999999999988 4453
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=4.4e-21 Score=192.28 Aligned_cols=204 Identities=22% Similarity=0.158 Sum_probs=134.6
Q ss_pred hcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCc-------------cceeCCccccCCCCccEEe-ccCCcCc
Q 038396 63 CNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNN-------------FFGTIPDTFIKESRLGVID-LSHNLFQ 128 (456)
Q Consensus 63 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~N~l~ 128 (456)
..+++|+.|+|++|.++ .+|..++.+. +|++|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45778888888888887 7888888888 78888887764 3344555666666666666 5555432
Q ss_pred ccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChh
Q 038396 129 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSK 208 (456)
Q Consensus 129 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 208 (456)
.|+.+.+++|.++...+ ..|+.|++++|.+++++. + ..+++|+.|++++|.++ .+|..
T Consensus 424 -----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~--~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--L--EQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--G--GGGTTCCEEECCSSCCC-CCCGG
T ss_pred -----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--c--cccccCcEeecCccccc-ccchh
Confidence 23334444555542211 247777777777776531 3 66777777777777776 55532
Q ss_pred hhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhcc
Q 038396 209 SFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANL 288 (456)
Q Consensus 209 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 288 (456)
+.. +++|+.|+|++|.+++ +| .+..+
T Consensus 482 -~~~---------------------------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 482 -LAA---------------------------------------------------LRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp -GGG---------------------------------------------------CTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred -hhc---------------------------------------------------CCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 222 2336677777777776 44 67777
Q ss_pred CCCCeEeCCCccccccC-CccccCCCCCCeeeCCCCcccccCch---hhhcCCCCCEEec
Q 038396 289 KGLQVLNLDNNNLQGHI-PSCLGNLTNLESLDLSNNRFSGQIPQ---QLVEFTFLEFFDV 344 (456)
Q Consensus 289 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~l 344 (456)
++|+.|+|++|++++.. |..+..+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888888887665 77788888888888888887755432 2344777777764
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=6.5e-20 Score=189.47 Aligned_cols=142 Identities=25% Similarity=0.275 Sum_probs=78.2
Q ss_pred cchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccC
Q 038396 58 IPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN 137 (456)
Q Consensus 58 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 137 (456)
.++.|..++.|+.|+|++|.+. .+|..++.+. +|++|+|++|.|+ .+|..|..+++|++|+|++|+++ .+|..|..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3555666666666666666665 5555555555 5666666666666 55555666666666666666666 45666666
Q ss_pred CCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCC-CCccEEecccccCcCCCC
Q 038396 138 CSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRF-SKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 138 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~ 206 (456)
+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.+++..+..+ ..+ ..+..+++++|.+++.+|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~--~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL--TEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH--HHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH--hhcchhhhHHhhccCcccCcCc
Confidence 666666666666665 445556666666666666666655443322 111 111234555666555444
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=5.7e-19 Score=152.15 Aligned_cols=113 Identities=20% Similarity=0.319 Sum_probs=85.0
Q ss_pred cccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEecc
Q 038396 266 ILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVS 345 (456)
Q Consensus 266 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls 345 (456)
.|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 36667777777777677788888888888888888888888788888888888888888888888888888888889999
Q ss_pred CCcCcccCCCCCCCCCCCCcccCCCCCCCCCCC
Q 038396 346 DNYLTGAIPLGKQFATFDNTSFDGNSGLCGRPL 378 (456)
Q Consensus 346 ~N~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~ 378 (456)
+|+++|.++..+....+....+.++...|+.|.
T Consensus 135 ~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 988888877543322233334455555666553
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=8.7e-18 Score=144.70 Aligned_cols=127 Identities=22% Similarity=0.309 Sum_probs=64.1
Q ss_pred CEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccch-hhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 18 NALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPS-WICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 18 ~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
+++++++|+++ .+|.. ...++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+. +|++
T Consensus 11 ~~l~~s~~~l~-------~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK-------EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQE 82 (192)
T ss_dssp TEEECTTSCCS-------SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCE
T ss_pred CEEEcCCCCcC-------cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCE
Confidence 55666666654 33332 23555555555555544332 245555555555555555544444455544 4555
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
|++++|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|.++
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555555555444444555555555555555555444444444444555554444444
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=4.5e-21 Score=192.18 Aligned_cols=192 Identities=21% Similarity=0.239 Sum_probs=152.0
Q ss_pred hhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCc-------------CcccCCccccCCCCCcEEe-CcCCcCC
Q 038396 87 GNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL-------------FQGRIPRSLVNCSKLEFLD-LGNNQIS 152 (456)
Q Consensus 87 ~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~i~ 152 (456)
...+ +|+.|+|++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~-~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDE-QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTT-TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCc-cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 3455 8999999999998 789999999999999998775 3445555666666666666 454433
Q ss_pred cCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccC
Q 038396 153 DTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVIS 232 (456)
Q Consensus 153 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~ 232 (456)
.+|+.+.+++|.+..+.+ ..|+.|++++|.++ .+|. +..
T Consensus 423 ----------~~L~~l~l~~n~i~~l~~--------~~L~~L~Ls~n~l~-~lp~--~~~-------------------- 461 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLKMEY--------ADVRVLHLAHKDLT-VLCH--LEQ-------------------- 461 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH--------TTCSEEECTTSCCS-SCCC--GGG--------------------
T ss_pred ----------chhhhhhhhcccccccCc--------cCceEEEecCCCCC-CCcC--ccc--------------------
Confidence 234455566666665422 25889999999998 4552 322
Q ss_pred CCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCC
Q 038396 233 PYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL 312 (456)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 312 (456)
+++|+.|+|++|.++. +|..+..+++|+.|+|++|++++ +| .++.+
T Consensus 462 -------------------------------l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 462 -------------------------------LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp -------------------------------GTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred -------------------------------cccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 3458999999999995 68899999999999999999995 66 89999
Q ss_pred CCCCeeeCCCCcccccC-chhhhcCCCCCEEeccCCcCcccCCCC
Q 038396 313 TNLESLDLSNNRFSGQI-PQQLVEFTFLEFFDVSDNYLTGAIPLG 356 (456)
Q Consensus 313 ~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~ls~N~l~~~~p~~ 356 (456)
++|+.|+|++|+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999999999999776 999999999999999999999887743
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=8e-19 Score=181.29 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=80.6
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCC-----eeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCC
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVK-----NLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKES 115 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~-----~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~ 115 (456)
.+.++.|++.+|.+.. .+..+-....|. .++++.|.+. ..+..+..+. .|++|+|++|.+. .+|..+..++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCC-CCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCC-CCcEEECCCCCCC-CCChhhcCCC
Confidence 3557777887777774 333222222222 2223333333 4455666666 6777777777777 5555555777
Q ss_pred CccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEe
Q 038396 116 RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIID 195 (456)
Q Consensus 116 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 195 (456)
+|++|+|++|.++ .+|..|..+++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++.++ ..+ ..+++|++|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp-~~~--~~l~~L~~L~ 322 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLP-WEF--GNLCNLQFLG 322 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCC-SST--TSCTTCCCEE
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccC-hhh--hcCCCccEEe
Confidence 7777777777777 66777777777777777777777 56777777777777777777776543 233 6677777777
Q ss_pred cccccCcCCCC
Q 038396 196 LSNNRFTGKLP 206 (456)
Q Consensus 196 ls~n~l~~~~~ 206 (456)
|++|.+++.+|
T Consensus 323 L~~N~l~~~~p 333 (727)
T 4b8c_D 323 VEGNPLEKQFL 333 (727)
T ss_dssp CTTSCCCSHHH
T ss_pred CCCCccCCCCh
Confidence 77777775444
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=6.6e-18 Score=158.56 Aligned_cols=271 Identities=13% Similarity=0.089 Sum_probs=176.5
Q ss_pred CCCCcEEEccCCccccccchhhhc-CCCCCeeecccCcCc--cccChhhhhCCCCCcEEEccCCccceeCCccccC----
Q 038396 41 PPETILYLVSNNSLTGEIPSWICN-LNTVKNLVLSHNNLS--GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIK---- 113 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~---- 113 (456)
..+++.|.++++ +.......+.. +++|++|||++|++. ...+. ..+ .+..+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHhcccccc
Confidence 456788887764 22222234444 678888888888887 22211 122 23445555553 34456777
Q ss_pred ----CCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcc----cccCCCCCCc
Q 038396 114 ----ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKF----YGIIKEPRTD 185 (456)
Q Consensus 114 ----l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~ 185 (456)
+++|+.|++.+ .++.+.+.+|.++++|+.+++++|.+....+.+|..+.++..+.+..+.. ..+. ...+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~--~~~f 172 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE--HFAF 172 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT--TSCE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc--cccc
Confidence 88888888888 78777777888888888888888888777777888877777776655322 1121 1222
Q ss_pred cCCCCcc-EEecccccCcCCCChhhhhC---ccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccc
Q 038396 186 CRFSKLH-IIDLSNNRFTGKLPSKSFLC---LDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYN 261 (456)
Q Consensus 186 ~~l~~L~-~L~ls~n~l~~~~~~~~~~~---l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (456)
..+..|+ .+.+... +.++...+.. ..++..+.+.+.-..... ..+.
T Consensus 173 ~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~---------------------------~~l~ 222 (329)
T 3sb4_A 173 IEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADF---------------------------KLIR 222 (329)
T ss_dssp EESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHH---------------------------HHHH
T ss_pred ccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHH---------------------------HHHH
Confidence 4455555 3433321 1223222222 233333333332110000 0001
Q ss_pred cccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCC-eeeCCCCcccccCchhhhcCCCCC
Q 038396 262 KIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE-SLDLSNNRFSGQIPQQLVEFTFLE 340 (456)
Q Consensus 262 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~ 340 (456)
..+++|+.++|++|.++.+.+..|.++++|+.|+|.+| ++.+.+.+|.++++|+ .+++.+ .++...+..|.++++|+
T Consensus 223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 12466999999999999988889999999999999998 8778888899999999 999998 77767778899999999
Q ss_pred EEeccCCcCcccCC
Q 038396 341 FFDVSDNYLTGAIP 354 (456)
Q Consensus 341 ~L~ls~N~l~~~~p 354 (456)
.+++++|.++..-+
T Consensus 301 ~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 301 YVLATGDKITTLGD 314 (329)
T ss_dssp EEEECSSCCCEECT
T ss_pred EEEeCCCccCccch
Confidence 99999999875443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=6.2e-18 Score=142.45 Aligned_cols=132 Identities=22% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCcEEEccCCccc-cccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 42 PETILYLVSNNSLT-GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 42 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44555555555554 34444444555555555555555422 3344444 45555555555544344444444555555
Q ss_pred eccCCcCcccC-CccccCCCCCcEEeCcCCcCCcCCC---ccccCCCCCCEEEccCCccc
Q 038396 121 DLSHNLFQGRI-PRSLVNCSKLEFLDLGNNQISDTFP---SWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 121 ~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~ 176 (456)
++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555544321 1344444555555555555443322 23444444444444444443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=140.05 Aligned_cols=107 Identities=25% Similarity=0.358 Sum_probs=47.2
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
+|++|++++|.++ .+|..+..+. +|++|++++|.|++..+..|.++++|++|++++|++++..+..|..+++|++|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 3444444444444 3344444444 4444444444444443444444444444444444444444444444444444444
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l 175 (456)
++|.++...+..|..+++|+.|++++|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 44444433333344444444444444443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=139.45 Aligned_cols=128 Identities=23% Similarity=0.250 Sum_probs=115.6
Q ss_pred CCEEEccCCCCCCCCcCccCCCCC-CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcE
Q 038396 17 LNALNLSHNLLTSSNNLQGPLPVP-PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSV 95 (456)
Q Consensus 17 L~~L~Ls~N~l~~~~~l~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 95 (456)
-+++++++|+++ .+|.. .++++.|++++|.++ .+|..|.++++|++|+|++|.+++..+..|..+. +|++
T Consensus 12 ~~~l~~~~~~l~-------~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~ 82 (193)
T 2wfh_A 12 DTVVRCSNKGLK-------VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLT 82 (193)
T ss_dssp TTEEECTTSCCS-------SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred CCEEEcCCCCCC-------cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCE
Confidence 478999999987 45543 578999999999999 6778999999999999999999977777899998 8999
Q ss_pred EEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc
Q 038396 96 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 153 (456)
Q Consensus 96 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 153 (456)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+..
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999998888899999999999999999997777789999999999999999863
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.2e-17 Score=156.83 Aligned_cols=264 Identities=14% Similarity=0.093 Sum_probs=162.0
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccc--cccchhhhcCCCCCeeecccCcCccccChhhhh---
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLT--GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGN--- 88 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 88 (456)
+.+|++|.++++- .. .++. .+...+++|+.|||++|++. ...+..+ +.++.+.+..|.|. +.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~-~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NA-EDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEE-CH-HHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEET
T ss_pred hCceeEEEEeccc-cH-HHHH-HHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhccccc
Confidence 4567777777642 10 0010 11111567778888877776 2222222 22344444444222 233444
Q ss_pred -----CCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcC----CcCCCccc
Q 038396 89 -----FSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI----SDTFPSWL 159 (456)
Q Consensus 89 -----l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i----~~~~~~~~ 159 (456)
+. +|+.|++.+ .++.+.+.+|.++++|+.|++++|.+..+.+.+|.++.++..+.+..+.. ......+|
T Consensus 95 ~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 55 677777766 66656666677777777777777766656666666666666666554221 11122233
Q ss_pred cCCCCC--------------------------CEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCc
Q 038396 160 GTIPNL--------------------------NVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCL 213 (456)
Q Consensus 160 ~~l~~L--------------------------~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 213 (456)
.++..| ..+.+.++-.. .....+ ...+++|+.+++++|.++ .++..+|.++
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l-~~~~~~L~~l~L~~n~i~-~I~~~aF~~~ 249 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLI-RDYMPNLVSLDISKTNAT-TIPDFTFAQK 249 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHH-HHHCTTCCEEECTTBCCC-EECTTTTTTC
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHH-HHhcCCCeEEECCCCCcc-eecHhhhhCC
Confidence 333333 34443332110 000000 013689999999999988 7887777665
Q ss_pred cccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCC-
Q 038396 214 DAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQ- 292 (456)
Q Consensus 214 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~- 292 (456)
.+ |++|++.+| ++.+.+.+|.++++|+
T Consensus 250 ~~---------------------------------------------------L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 250 KY---------------------------------------------------LLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp TT---------------------------------------------------CCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred CC---------------------------------------------------CCEEECCcc-cceehHHHhhCChhccE
Confidence 44 666667666 6677778899999999
Q ss_pred eEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEec
Q 038396 293 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDV 344 (456)
Q Consensus 293 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 344 (456)
.+++.+ .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999988 777677888999999999999999998777778999999998863
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=1.4e-17 Score=140.37 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=116.9
Q ss_pred cCCCCCeeecccCcCc-cccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCc
Q 038396 64 NLNTVKNLVLSHNNLS-GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE 142 (456)
Q Consensus 64 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 142 (456)
..++|++|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999997 67888888888 899999999999865 7788999999999999999977888888899999
Q ss_pred EEeCcCCcCCcCC-CccccCCCCCCEEEccCCcccccCC---CCCCccCCCCccEEecccccCcCCCC
Q 038396 143 FLDLGNNQISDTF-PSWLGTIPNLNVLILRSNKFYGIIK---EPRTDCRFSKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 143 ~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~ 206 (456)
+|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+ ..+++|++|++++|.+. ++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSC-BCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChh-hcc
Confidence 9999999998643 2688899999999999999987754 233 67899999999999887 555
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1.6e-16 Score=134.89 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeC
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 146 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 146 (456)
+|++|++++|.+++..+..+..+. +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 444555555555433333334444 4555555555555444444555555555555555555444444555555666666
Q ss_pred cCCcCCcCCCccccCCCCCCEEEccCCcccc
Q 038396 147 GNNQISDTFPSWLGTIPNLNVLILRSNKFYG 177 (456)
Q Consensus 147 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 177 (456)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666554444444555666666666665543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=1.3e-17 Score=137.50 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCcEEEccCCccc-cccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 43 ETILYLVSNNSLT-GEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 43 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++.+|..+..+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3444444444443 33333344444444444444444422 2333333 344444444444433333333344444444
Q ss_pred ccCCcCccc-CCccccCCCCCcEEeCcCCcCC
Q 038396 122 LSHNLFQGR-IPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 122 Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
+++|++++. .+..+..+++|++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 444444321 1133444444444444444444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=2.2e-16 Score=134.16 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=116.6
Q ss_pred CCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCc
Q 038396 68 VKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 147 (456)
Q Consensus 68 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 147 (456)
.+.+++++|.++ .+|..+. . +|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--C-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 578899999998 6675543 3 89999999999998777788999999999999999997777778999999999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCC
Q 038396 148 NNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLP 206 (456)
Q Consensus 148 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 206 (456)
+|.+++..+..+..+++|++|++++|+++++++..+ ..+++|++|++++|.+.+..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 999998777788999999999999999998876555 778999999999999986544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.5e-15 Score=145.64 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=129.7
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEe
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVID 121 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 121 (456)
..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++..-..+|.+. +|+.+.+.. .++.+.+.+|.++.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3444444432 3443444555553 5666666554 443434445442 466666664 45545556666666666666
Q ss_pred ccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccC
Q 038396 122 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 122 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 201 (456)
+++|+++.+...+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.+....| .. .+|+.+.+. +.+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLP-NGV 259 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEE-TTC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeC-CCc
Confidence 666666644444554 466666666533 44455556666666666666653 444444444 33 456666663 334
Q ss_pred cCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEEEccCCCCC---
Q 038396 202 TGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFD--- 278 (456)
Q Consensus 202 ~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--- 278 (456)
+ .++..+|.++.+|+.+ ++.+|.+.
T Consensus 260 ~-~I~~~aF~~c~~L~~l---------------------------------------------------~l~~~~~~~~~ 287 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEV---------------------------------------------------TTYGSTFNDDP 287 (401)
T ss_dssp C-EECTTTTTTCTTCCEE---------------------------------------------------EEESSCCCCCT
T ss_pred c-EEChhHhhCCCCCCEE---------------------------------------------------EeCCccccCCc
Confidence 4 4555555555554444 44443332
Q ss_pred --ccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCc
Q 038396 279 --RVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLT 350 (456)
Q Consensus 279 --~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~ 350 (456)
.+....|.++++|+.++|. +.++.....+|.++++|+.++|..| ++..-...|.++ +|+.+++++|.+.
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3344556666666666665 3355455555666666666666443 443444555555 6666666666543
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=3.1e-17 Score=135.21 Aligned_cols=128 Identities=24% Similarity=0.269 Sum_probs=82.4
Q ss_pred CCCCCeeecccCcCc-cccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcE
Q 038396 65 LNTVKNLVLSHNNLS-GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 143 (456)
Q Consensus 65 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 143 (456)
.++|++|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 356777777777776 55666666666 677777777777654 55666777777777777776556666666677777
Q ss_pred EeCcCCcCCcC-CCccccCCCCCCEEEccCCcccccCC---CCCCccCCCCccEEecc
Q 038396 144 LDLGNNQISDT-FPSWLGTIPNLNVLILRSNKFYGIIK---EPRTDCRFSKLHIIDLS 197 (456)
Q Consensus 144 L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~l~~L~~L~ls 197 (456)
|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+ ..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF--KLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHH--HHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHH--HHCCCcccccCC
Confidence 77777777643 23556666777777777776665533 122 556666666654
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=3.7e-15 Score=142.88 Aligned_cols=267 Identities=11% Similarity=0.109 Sum_probs=197.7
Q ss_pred CCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCC
Q 038396 14 MQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDEL 93 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 93 (456)
+..++.+.+..+ ++ .+....+.. .+|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++..-+.+|.++. +|
T Consensus 112 ~~~l~~i~ip~~-i~---~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK---SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NL 182 (401)
T ss_dssp CSSCSEEECCTT-CC---EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT-TC
T ss_pred cCCccEEEECCc-cC---EehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc-cC
Confidence 466777777654 33 122222222 36889998776 776777788884 699999986 66656667788888 89
Q ss_pred cEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCC
Q 038396 94 SVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSN 173 (456)
Q Consensus 94 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 173 (456)
+.+++++|.++.+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~ 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence 9999999999977777776 589999999855 77677888999999999999875 55566677777 78999999 45
Q ss_pred cccccCCCCCCccCCCCccEEecccccCc----CCCChhhhhCccccccccccCccccccccCCCCCcccccccccccee
Q 038396 174 KFYGIIKEPRTDCRFSKLHIIDLSNNRFT----GKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSL 249 (456)
Q Consensus 174 ~l~~~~~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (456)
.++.+....| ..+++|+.+++.+|.+. ..++..+|.++.+
T Consensus 258 ~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~---------------------------------- 301 (401)
T 4fdw_A 258 GVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK---------------------------------- 301 (401)
T ss_dssp TCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT----------------------------------
T ss_pred CccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhCCcc----------------------------------
Confidence 5776766666 78899999999887664 1244444544443
Q ss_pred EeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccC
Q 038396 250 IMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQI 329 (456)
Q Consensus 250 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 329 (456)
|+.+++. +.++.+...+|.++++|+.++|..+ ++.....+|.++ +|+.+++++|.+....
T Consensus 302 -----------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 302 -----------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp -----------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred -----------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 5566665 3466666778888999999999655 766777888888 9999999999887666
Q ss_pred chhhhcCC-CCCEEeccCCcCc
Q 038396 330 PQQLVEFT-FLEFFDVSDNYLT 350 (456)
Q Consensus 330 ~~~l~~l~-~L~~L~ls~N~l~ 350 (456)
+..|..++ .+..|.+..+.+.
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccCCCCCccEEEeCHHHHH
Confidence 67777774 7888888877654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=4.4e-16 Score=132.07 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred hhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCC
Q 038396 62 ICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 141 (456)
Q Consensus 62 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 141 (456)
+.++.+|++|++++|.++ .+|. +..+.++|++|++++|.+++. ..|..+++|++|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 556677788888888777 4444 444433688888888888765 567778888888888888886555555778888
Q ss_pred cEEeCcCCcCCcCCCc--cccCCCCCCEEEccCCcccccCCC-CCCccCCCCccEEecccccCc
Q 038396 142 EFLDLGNNQISDTFPS--WLGTIPNLNVLILRSNKFYGIIKE-PRTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 142 ~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~ls~n~l~ 202 (456)
++|++++|.++ .+|. .+..+++|++|++++|.+...+.. ...+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888886 4444 677788888888888887755321 001356788888888887664
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=6.7e-16 Score=130.93 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCc--cccCCCCCcEE
Q 038396 67 TVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFL 144 (456)
Q Consensus 67 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~~L 144 (456)
+|++|++++|.+++. ..+..++ +|++|++++|.+++..+..|..+++|++|++++|+++ .+|. .+..+++|++|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 555555555555432 3344444 4555555555555443333455555555555555554 2333 45555555555
Q ss_pred eCcCCcCCcCCCc----cccCCCCCCEEEccCCcc
Q 038396 145 DLGNNQISDTFPS----WLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 145 ~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l 175 (456)
++++|.++ ..|. .+..+++|+.|+++.|..
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555554 2233 255556666666655554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=1.7e-17 Score=143.81 Aligned_cols=136 Identities=24% Similarity=0.290 Sum_probs=93.2
Q ss_pred chhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCC
Q 038396 59 PSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 138 (456)
Q Consensus 59 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 138 (456)
|..+..+++|++|++++|.+++ +| .+..++ +|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 3477777888888888887774 56 677776 7888888888777 456666666778888888887774 34 56777
Q ss_pred CCCcEEeCcCCcCCcCCC-ccccCCCCCCEEEccCCcccccCCCC--------CCccCCCCccEEecccccCc
Q 038396 139 SKLEFLDLGNNQISDTFP-SWLGTIPNLNVLILRSNKFYGIIKEP--------RTDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 139 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~~~l~~L~~L~ls~n~l~ 202 (456)
++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.. ..+..+++|+.|| ++.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 778888888887764322 35677778888888888776654321 0125567777776 55554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.3e-14 Score=121.98 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=59.7
Q ss_pred CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396 69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 148 (456)
Q Consensus 69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 148 (456)
+++++++|.++ .+|..+. . +|++|++++|.|++..|..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45566666665 4454332 2 566666666666655555566666666666666666655454555666666666666
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCccc
Q 038396 149 NQISDTFPSWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 176 (456)
|.+++..+..|..+++|++|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665544445555556666666655554
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=2.7e-14 Score=120.49 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=62.2
Q ss_pred CeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcC
Q 038396 69 KNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 148 (456)
Q Consensus 69 ~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 148 (456)
+.+++++|.++ .+|..+. . +|++|++++|.|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666665 5555432 2 566666666666655566666666666666666666654444456666666666666
Q ss_pred CcCCcCCCccccCCCCCCEEEccCCccc
Q 038396 149 NQISDTFPSWLGTIPNLNVLILRSNKFY 176 (456)
Q Consensus 149 n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 176 (456)
|.|++..+..|..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666444444566666666666666554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=3.7e-14 Score=119.23 Aligned_cols=105 Identities=24% Similarity=0.253 Sum_probs=63.1
Q ss_pred cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC
Q 038396 45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124 (456)
Q Consensus 45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 124 (456)
+.+++++|.++ .+|..+ .++|++|+|++|.+++..|..|..+. +|++|++++|+|++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555555 233333 24566666666666655455555665 566666666666655555566666666666666
Q ss_pred CcCcccCCccccCCCCCcEEeCcCCcCCc
Q 038396 125 NLFQGRIPRSLVNCSKLEFLDLGNNQISD 153 (456)
Q Consensus 125 N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 153 (456)
|++++..+..|..+++|++|+|++|.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665555556666777777777776653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=4.9e-16 Score=134.47 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=123.6
Q ss_pred hhhhcCCCCCEEEccCCCCCCCCcCccCCCC------C---CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCc
Q 038396 9 LLDPSMQYLNALNLSHNLLTSSNNLQGPLPV------P---PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLS 79 (456)
Q Consensus 9 ~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~------~---~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 79 (456)
+.. ...++.++++.+.++ +.+|. . +++|+.|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 14 ~~~--~~~l~~l~l~~~~l~------~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEE--RKSVVATEAEKVELH------GMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHH--TTCCCCTTCSEEECC------BCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred HHh--cccccCcchheeEec------cccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 445 678888888888775 23332 2 7899999999999996 66 8899999999999999998
Q ss_pred cccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCC-ccccCCCCCcEEeCcCCcCCcCCCc-
Q 038396 80 GVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPS- 157 (456)
Q Consensus 80 ~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~- 157 (456)
.+|..+..++ +|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|.
T Consensus 84 -~l~~~~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 84 -KIENLDAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp -SCSSHHHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred -cccchhhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 7788777777 89999999999986 44 58888999999999999985333 4788999999999999999866554
Q ss_pred ---------cccCCCCCCEEEccCCcccc
Q 038396 158 ---------WLGTIPNLNVLILRSNKFYG 177 (456)
Q Consensus 158 ---------~~~~l~~L~~L~L~~n~l~~ 177 (456)
.+..+++|+.|+ +|.++.
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 277899999887 666543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=9.7e-14 Score=117.08 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=67.6
Q ss_pred cEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC
Q 038396 45 ILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124 (456)
Q Consensus 45 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 124 (456)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+. +|++|+|++|+|+++.+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45566666655 3444332 5666666666666655566666666 677777777777655555566777777777777
Q ss_pred CcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396 125 NLFQGRIPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 125 N~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
|++++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777555555777777777777777776
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=1.3e-12 Score=125.66 Aligned_cols=311 Identities=10% Similarity=0.043 Sum_probs=193.5
Q ss_pred hhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh
Q 038396 8 WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87 (456)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 87 (456)
.|.+ |.+|+.+.+..+ ++ .+....+..+.+|+.+++.++ ++.+...+|.++..|+.+.+..+ ++.....+|.
T Consensus 66 AF~~--c~~L~~i~lp~~-i~---~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 66 AFQG--CRKVTEIKIPST-VR---EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTTT--CTTEEEEECCTT-CC---EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HhhC--CCCceEEEeCCC-cc---CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 4677 889999999754 54 233344445788999998755 66566778888889988877654 3324445565
Q ss_pred hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCE
Q 038396 88 NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV 167 (456)
Q Consensus 88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 167 (456)
... +....... .+..+...+|.++.+|+.+.+..+... +....|.++.+|+.+++..+ ++.....+|.++..|+.
T Consensus 138 ~~~--~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCD--FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TCC--CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ccc--ccccccCc-cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 553 33333322 223355667888888888888766433 66778888888888888766 44455567778888888
Q ss_pred EEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccc
Q 038396 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY 247 (456)
Q Consensus 168 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (456)
+.+..+... +.... .....|+.+.+... ++ .+....|..+..++.+.+..... ......+..... ..
T Consensus 213 i~~~~~~~~-i~~~~---~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~------l~ 279 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFA---LSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSG------LK 279 (394)
T ss_dssp CCCCTTCCE-ECTTT---TTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTT------CC
T ss_pred eecCCCceE-eehhh---cccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcc-eeeccccccccc------cc
Confidence 777665432 11111 23456677666543 22 34445566666666655543221 000001100000 00
Q ss_pred eeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccc
Q 038396 248 SLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSG 327 (456)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 327 (456)
................+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.
T Consensus 280 ~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 280 KVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp EEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred eeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 0000000011111223567888888654 66667778899999999999754 76667788999999999999877 665
Q ss_pred cCchhhhcCCCCCEEeccCC
Q 038396 328 QIPQQLVEFTFLEFFDVSDN 347 (456)
Q Consensus 328 ~~~~~l~~l~~L~~L~ls~N 347 (456)
.-..+|.++.+|+.+++..+
T Consensus 357 I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGG
T ss_pred ehHHHhhCCCCCCEEEECCC
Confidence 66678999999999998654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=1.5e-15 Score=144.32 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=114.6
Q ss_pred CCCCCEEEccCCCCCCC--CcCccCCCCCCCCCcEEEccCCccccccchhh-hcCCCCCeeecccCcCccccChhhhh--
Q 038396 14 MQYLNALNLSHNLLTSS--NNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTVKNLVLSHNNLSGVLPQCLGN-- 88 (456)
Q Consensus 14 l~~L~~L~Ls~N~l~~~--~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 88 (456)
+++|++|+|++|.|+.. ..+...+....++|+.|++++|.+++.....+ ..+++|++|+|++|.+++.....+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46799999999998721 11222222234689999999998875443333 34678899999999987544444432
Q ss_pred --CCCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCccc----CCccccCCCCCcEEeCcCCcCCcCC---
Q 038396 89 --FSDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDTF--- 155 (456)
Q Consensus 89 --l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~--- 155 (456)
..++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.|++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 123799999999988743 344456788899999999988753 2456677788999999999887532
Q ss_pred -CccccCCCCCCEEEccCCccccc
Q 038396 156 -PSWLGTIPNLNVLILRSNKFYGI 178 (456)
Q Consensus 156 -~~~~~~l~~L~~L~L~~n~l~~~ 178 (456)
+..+...++|++|+|++|.++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 33444668899999999988643
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1.2e-14 Score=138.06 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=115.3
Q ss_pred CCCCcEEEccCCccccccchhhhcC-----CCCCeeecccCcCccccChhhhh-CCCCCcEEEccCCccceeCCccc---
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNL-----NTVKNLVLSHNNLSGVLPQCLGN-FSDELSVLDLQGNNFFGTIPDTF--- 111 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~-l~~~L~~L~Ls~n~i~~~~~~~~--- 111 (456)
.+.++.|++++|.++......+..+ ++|++|+|++|.+++.....+.. +. +|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHH
Confidence 4678899999999886555544433 68999999999987544444433 34 79999999999875433333
Q ss_pred --cCCCCccEEeccCCcCccc----CCccccCCCCCcEEeCcCCcCCcCC----CccccCCCCCCEEEccCCcccccCCC
Q 038396 112 --IKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDTF----PSWLGTIPNLNVLILRSNKFYGIIKE 181 (456)
Q Consensus 112 --~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~ 181 (456)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.|++.. +..+...++|++|+|++|.++.....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2467899999999998752 3445577888999999999987532 45566778899999999988753211
Q ss_pred CC--CccCCCCccEEecccccCc
Q 038396 182 PR--TDCRFSKLHIIDLSNNRFT 202 (456)
Q Consensus 182 ~~--~~~~l~~L~~L~ls~n~l~ 202 (456)
.+ .....++|++|++++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 11 1134578999999999886
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.6e-12 Score=121.34 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=53.0
Q ss_pred EEccCC-ccccccchhhhcCCCCCeeeccc-CcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccC
Q 038396 47 YLVSNN-SLTGEIPSWICNLNTVKNLVLSH-NNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 124 (456)
Q Consensus 47 L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 124 (456)
++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+. +|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 555 3444 55555555555553 555544444455554 555555555555555555555555555555555
Q ss_pred CcCcccCCccccCCCCCcEEeCcCCcCC
Q 038396 125 NLFQGRIPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 125 N~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
|++++..+..|..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555544333343333 555555555554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.8e-12 Score=122.46 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=65.2
Q ss_pred cccccEEEccC-CCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396 264 PDILTGIILSS-NRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342 (456)
Q Consensus 264 ~~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 342 (456)
..+|++|+|++ |.++++++..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34577777775 777777777777777777777777777777777777777777777777777755555555554 7777
Q ss_pred eccCCcCcccCC
Q 038396 343 DVSDNYLTGAIP 354 (456)
Q Consensus 343 ~ls~N~l~~~~p 354 (456)
+|++|++.+.+.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 777777776655
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=4.1e-11 Score=115.09 Aligned_cols=303 Identities=12% Similarity=0.070 Sum_probs=160.2
Q ss_pred hhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh
Q 038396 8 WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87 (456)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 87 (456)
.|.+ |++|+.+++..+ ++ .+.......+..|+.+.+..+ +......+|.++..++...... +......+|.
T Consensus 89 aF~~--c~~L~~i~lp~~-l~---~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~ 159 (394)
T 4fs7_A 89 AFEN--CSKLEIINIPDS-VK---MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFA 159 (394)
T ss_dssp TTTT--CTTCCEECCCTT-CC---EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTT
T ss_pred HhhC--CCCCcEEEeCCC-ce---EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhc
Confidence 5778 999999999865 44 122223333566666555433 3334445555554332222221 2213334555
Q ss_pred hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCE
Q 038396 88 NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNV 167 (456)
Q Consensus 88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 167 (456)
++. +|+.+.+.++. ..+...+|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... +.+......+|+.
T Consensus 160 ~c~-~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 160 TCE-SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKN 234 (394)
T ss_dssp TCT-TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCE
T ss_pred ccC-CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCce
Confidence 665 67777766543 3355566666667777666655 44355556666666666665554332 1122223345555
Q ss_pred EEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccc
Q 038396 168 LILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDY 247 (456)
Q Consensus 168 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (456)
+.+... ++.+....+ ..+..++.+.+..+.. .++...|..+..++.+......+.......... . .
T Consensus 235 i~ip~~-~~~i~~~~f--~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~-------L--~ 300 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVF--YGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSS-------L--T 300 (394)
T ss_dssp EEECTT-CCEECSSTT--TTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEECTTTTTTCTT-------C--C
T ss_pred EEECCC-ceecccccc--cccccceeEEcCCCcc--eeeccccccccccceeccCceeecccccccccc-------c--c
Confidence 555432 222222222 4445555555544422 233333444444433332221110000000000 0 0
Q ss_pred eeEeeccC--cccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcc
Q 038396 248 SLIMNSKG--RMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 325 (456)
Q Consensus 248 ~~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 325 (456)
.+...... ........+.+|+.+++..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ +
T Consensus 301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~ 377 (394)
T 4fs7_A 301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-L 377 (394)
T ss_dssp EEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-G
T ss_pred ccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-C
Confidence 00000000 00111122567999999754 77777889999999999999877 77677889999999999999765 3
Q ss_pred cccCchhhhcCCCCCEE
Q 038396 326 SGQIPQQLVEFTFLEFF 342 (456)
Q Consensus 326 ~~~~~~~l~~l~~L~~L 342 (456)
. .+...|.++++|+.+
T Consensus 378 ~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 378 E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-GGGGGBCTTCEEEEE
T ss_pred E-EhhheecCCCCCcEE
Confidence 3 334668888887764
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=2.6e-10 Score=109.41 Aligned_cols=198 Identities=8% Similarity=0.075 Sum_probs=118.8
Q ss_pred hhhhhcCC-CCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCc---cccccchhhhcCCCCCeeecccCcCccccC
Q 038396 8 WLLDPSMQ-YLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNS---LTGEIPSWICNLNTVKNLVLSHNNLSGVLP 83 (456)
Q Consensus 8 ~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 83 (456)
.|.+ ++ .|+.+.+..+ ++ .+...-+..+.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++....
T Consensus 58 aF~~--~~~~L~sI~iP~s-vt---~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 58 VFCN--YKYVLTSVQIPDT-VT---EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp TTTT--CCSCCCEEEECTT-CC---EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred hccC--CCCcCEEEEECCC-ee---EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 4656 64 5888888754 44 2333334447888888887663 66556678888888888877654 443445
Q ss_pred hhhhhCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCC
Q 038396 84 QCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP 163 (456)
Q Consensus 84 ~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 163 (456)
.+|..+. +|+.+.+..+ +..+...+|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+..+-.. ....+|..+.
T Consensus 131 ~aF~~c~-~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCE-ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhc-ccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcc
Confidence 5666776 7888888654 34466677778888888888765 44344455543 45777766544322 3334455555
Q ss_pred CCCEEEccCCc------------------------------------ccccCCCCCCccCCCCccEEecccccCcCCCCh
Q 038396 164 NLNVLILRSNK------------------------------------FYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPS 207 (456)
Q Consensus 164 ~L~~L~L~~n~------------------------------------l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 207 (456)
+++......+. +..+.... +..+..|+.+.+..+.. .+..
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~a--F~~c~~L~~i~lp~~~~--~I~~ 281 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHA--FDSCAYLASVKMPDSVV--SIGT 281 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTT--TTTCSSCCEEECCTTCC--EECT
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccce--eeecccccEEecccccc--eecC
Confidence 55544332221 11122222 36778888888865533 4555
Q ss_pred hhhhCccccccccc
Q 038396 208 KSFLCLDAMKIVNT 221 (456)
Q Consensus 208 ~~~~~l~~l~~l~l 221 (456)
..|.++..|+.+.+
T Consensus 282 ~aF~~c~~L~~i~l 295 (394)
T 4gt6_A 282 GAFMNCPALQDIEF 295 (394)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred cccccccccccccC
Confidence 56666666555544
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=2.7e-09 Score=102.29 Aligned_cols=288 Identities=11% Similarity=0.088 Sum_probs=176.7
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCeeecccCc---CccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCcc
Q 038396 42 PETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNN---LSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLG 118 (456)
Q Consensus 42 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 118 (456)
..|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++..-..+|..+. +|+.+.+..+ ++.+...+|..+.+|+
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeeccCCc-cceehhhhhhhhcccc
Confidence 35888988754 776778899999999999998874 6645556787887 8998888765 5557778899999999
Q ss_pred EEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEeccc
Q 038396 119 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSN 198 (456)
Q Consensus 119 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 198 (456)
.+.+..+- ..+....|..+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+- ..+....+ ..+..+.......
T Consensus 141 ~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af--~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 141 TVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAF--SECFALSTITSDS 214 (394)
T ss_dssp EEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTT--TTCTTCCEEEECC
T ss_pred ccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchh--hhccccceecccc
Confidence 99998664 4477788999999999999876 44354556654 679999887653 33333344 5666777666554
Q ss_pred ccCcCCCChhhhhCc-------------cccccccccCcccccccc-CCCCCccccccccccceeEeeccC--ccccccc
Q 038396 199 NRFTGKLPSKSFLCL-------------DAMKIVNTSQLRYLQDVI-SPYGQVSTDLISTYDYSLIMNSKG--RMMTYNK 262 (456)
Q Consensus 199 n~l~~~~~~~~~~~l-------------~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 262 (456)
+... .+....+... ..+..+.+... +.... ..+... . ....+...... .......
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c----~--~L~~i~lp~~~~~I~~~aF~ 285 (394)
T 4gt6_A 215 ESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSC----A--YLASVKMPDSVVSIGTGAFM 285 (394)
T ss_dssp SSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTC----S--SCCEEECCTTCCEECTTTTT
T ss_pred cccc-cccceeecccccccccccccccccccceEEcCCc--ceEcccceeeec----c--cccEEecccccceecCcccc
Confidence 4332 1111111100 00000000000 00000 000000 0 00000000000 0001112
Q ss_pred ccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEE
Q 038396 263 IPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFF 342 (456)
Q Consensus 263 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 342 (456)
.+..|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++..-..+|.++++|+.+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 24567777775 4566666677888888888888754 65566677888888888888654 554445678888888888
Q ss_pred eccCCcCc
Q 038396 343 DVSDNYLT 350 (456)
Q Consensus 343 ~ls~N~l~ 350 (456)
++.++...
T Consensus 363 ~~~~~~~~ 370 (394)
T 4gt6_A 363 EYSGSRSQ 370 (394)
T ss_dssp EESSCHHH
T ss_pred EECCceee
Confidence 88877543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=2.6e-10 Score=107.26 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=46.3
Q ss_pred cccccEEEccCCCCCccCchhhh---ccCCCCeEeCCCcccccc----CCccccCCCCCCeeeCCCCcccccCchhhhc-
Q 038396 264 PDILTGIILSSNRFDRVIPTSIA---NLKGLQVLNLDNNNLQGH----IPSCLGNLTNLESLDLSNNRFSGQIPQQLVE- 335 (456)
Q Consensus 264 ~~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~- 335 (456)
+++|+.|+|.+|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.|+......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34567777766666543222222 356777777777777643 2233345567777777777766443333332
Q ss_pred CCCCCEEeccCCc
Q 038396 336 FTFLEFFDVSDNY 348 (456)
Q Consensus 336 l~~L~~L~ls~N~ 348 (456)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3446666654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=4.1e-10 Score=105.89 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=90.4
Q ss_pred ccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCcccc--CCCCCCEEEccC--CcccccC-----CC
Q 038396 111 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG--TIPNLNVLILRS--NKFYGII-----KE 181 (456)
Q Consensus 111 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-----~~ 181 (456)
+..+++|+.|++++|.-. .++. +. +++|++|++..+.++......+. .+++|+.|+|+. |...+.. ..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344566666666665211 1222 22 56677777776666533222332 567777777642 1111110 00
Q ss_pred CCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccc
Q 038396 182 PRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYN 261 (456)
Q Consensus 182 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (456)
.+....+++|++|++.+|.+.+..+...+. .
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-------------------------------------------------a 275 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-------------------------------------------------S 275 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHH-------------------------------------------------C
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHh-------------------------------------------------C
Confidence 111134678888888887775221111000 0
Q ss_pred cccccccEEEccCCCCCccC----chhhhccCCCCeEeCCCccccccCCccccC-CCCCCeeeCCCCc
Q 038396 262 KIPDILTGIILSSNRFDRVI----PTSIANLKGLQVLNLDNNNLQGHIPSCLGN-LTNLESLDLSNNR 324 (456)
Q Consensus 262 ~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~N~ 324 (456)
..++.|++|+|+.|.+.+.. +..+..+++|+.|+|++|.+++.....+.. + ...++++.++
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 01456899999999887642 334466799999999999988655454543 2 4668898887
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=1.5e-07 Score=89.62 Aligned_cols=291 Identities=11% Similarity=0.065 Sum_probs=180.0
Q ss_pred hhhhhcCCCCCEEEccCCCCCCCCcCccCCCCCCCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhh
Q 038396 8 WLLDPSMQYLNALNLSHNLLTSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLG 87 (456)
Q Consensus 8 ~~~~~~l~~L~~L~Ls~N~l~~~~~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 87 (456)
++.. ..+|+.+.+... ++ .+...-+..+.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ ++..-..+|.
T Consensus 41 ~~~~--~~~i~~v~ip~~-vt---~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~ 111 (379)
T 4h09_A 41 WYKD--RDRISEVRVNSG-IT---SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ 111 (379)
T ss_dssp TGGG--GGGCSEEEECTT-EE---EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT
T ss_pred cccc--ccCCEEEEeCCC-cc---ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec
Confidence 4555 678999988753 44 233334445889999999754 776667788887 6888877644 5523334454
Q ss_pred hCCCCCcEEEccCCccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCCcCCc------------CC
Q 038396 88 NFSDELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD------------TF 155 (456)
Q Consensus 88 ~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~------------~~ 155 (456)
. . +|+.+.+..+ ++.+...+|.. .+++.+.+..+ ++......|..+.+++...+..+.... ..
T Consensus 112 ~-~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 112 G-T-DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp T-C-CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred c-C-CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccce
Confidence 3 4 7999999866 33355556655 36777766654 444666778888888888776544321 11
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCCCccCCCCccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCC
Q 038396 156 PSWLGTIPNLNVLILRSNKFYGIIKEPRTDCRFSKLHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYG 235 (456)
Q Consensus 156 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~ 235 (456)
...+.....+..+.+.... .......+ .....|+.+.+..+ +. .++...|..+..|+.+.+...- ..+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~-~~i~~~~f--~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~v--~~I~~--- 256 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTV-KTVTAYGF--SYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKNV--TSIGS--- 256 (379)
T ss_dssp EEECCTTCCCSEEECCTTC-CEECTTTT--TTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTTC--CEECT---
T ss_pred eccccccccccccccccce-eEEeeccc--ccccccceeeeccc-ee-EEccccccCCccceEEEcCCCc--cEeCc---
Confidence 1233344455555554332 22222223 55667777777544 33 4555667777777666654321 00000
Q ss_pred CccccccccccceeEeeccCcccccccccccccEEEccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCC
Q 038396 236 QVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL 315 (456)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 315 (456)
.....+..|+.+.+.. .+..+....|.++.+|+.+.+.++.++.+...+|.++.+|
T Consensus 257 -----------------------~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 257 -----------------------FLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp -----------------------TTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred -----------------------cccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 0011134567777754 3555566678888889999988888886777888888899
Q ss_pred CeeeCCCCcccccCchhhhcCCCCCEEeccCC
Q 038396 316 ESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347 (456)
Q Consensus 316 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 347 (456)
+.+.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99988755 55455567888888888877544
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.95 E-value=1.8e-07 Score=89.08 Aligned_cols=266 Identities=9% Similarity=-0.005 Sum_probs=173.2
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCeeecccCcCccccChhhhhCCCCCcEEEccCCccceeCCccccCCCCccEE
Q 038396 41 PPETILYLVSNNSLTGEIPSWICNLNTVKNLVLSHNNLSGVLPQCLGNFSDELSVLDLQGNNFFGTIPDTFIKESRLGVI 120 (456)
Q Consensus 41 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 120 (456)
..+++.+.+.. .++.+...+|.++.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++.+...+|.. .+|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT--KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC--CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC--CCceEECCce-eeEeccceecc-CCcccc
Confidence 45688888864 467677789999999999999754 664555666665 5888888754 55566667765 489999
Q ss_pred eccCCcCcccCCccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccCCcccccCCCCC----------CccCCCC
Q 038396 121 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRSNKFYGIIKEPR----------TDCRFSK 190 (456)
Q Consensus 121 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------~~~~l~~ 190 (456)
.+..+- ......+|.++ +|+.+.+..+ ++.....+|..+.+++...+..+.......... .+.....
T Consensus 119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 998763 43555666665 5776666544 344556677888888888876654322111100 0122334
Q ss_pred ccEEecccccCcCCCChhhhhCccccccccccCccccccccCCCCCccccccccccceeEeeccCcccccccccccccEE
Q 038396 191 LHIIDLSNNRFTGKLPSKSFLCLDAMKIVNTSQLRYLQDVISPYGQVSTDLISTYDYSLIMNSKGRMMTYNKIPDILTGI 270 (456)
Q Consensus 191 L~~L~ls~n~l~~~~~~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 270 (456)
+..+.+..... .+....+.....++.+.+...-. .... .....+..|+.+
T Consensus 196 ~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~~--~i~~--------------------------~~f~~~~~L~~i 245 (379)
T 4h09_A 196 GTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGVT--TLGD--------------------------GAFYGMKALDEI 245 (379)
T ss_dssp CSEEECCTTCC--EECTTTTTTCSSCSEEECCTTCC--EECT--------------------------TTTTTCSSCCEE
T ss_pred cccccccccee--EEeecccccccccceeeecccee--EEcc--------------------------ccccCCccceEE
Confidence 44444433221 22334455555555554433110 0000 001114568888
Q ss_pred EccCCCCCccCchhhhccCCCCeEeCCCccccccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCC
Q 038396 271 ILSSNRFDRVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDN 347 (456)
Q Consensus 271 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N 347 (456)
.+..+ ++.+....|.++.+|+.+.+..+ ++.....+|.++++|+.+.+.++.++..-...|.++.+|+.+++..+
T Consensus 246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred EcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 88765 66666778899999999999755 66566778999999999999999888666788999999999999755
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=2.4e-09 Score=90.94 Aligned_cols=117 Identities=11% Similarity=0.140 Sum_probs=63.6
Q ss_pred cchhhhcCCCCCeeecccC-cCccc----cChhhhhCCCCCcEEEccCCcccee----CCccccCCCCccEEeccCCcCc
Q 038396 58 IPSWICNLNTVKNLVLSHN-NLSGV----LPQCLGNFSDELSVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQ 128 (456)
Q Consensus 58 ~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 128 (456)
+...+...+.|++|+|++| .+.+. +...+.... +|++|+|++|.|... +...+...++|++|+|++|.++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445556677777777777 66532 223333344 677777777776532 2233344456666666666665
Q ss_pred cc----CCccccCCCCCcEEeC--cCCcCCcCC----CccccCCCCCCEEEccCCcc
Q 038396 129 GR----IPRSLVNCSKLEFLDL--GNNQISDTF----PSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 129 ~~----~~~~l~~l~~L~~L~L--s~n~i~~~~----~~~~~~l~~L~~L~L~~n~l 175 (456)
.. +...+...++|++|+| ++|.|+... ...+...++|++|++++|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 42 2344555566666666 556665321 12233344555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=6.7e-09 Score=88.13 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCCCcEEEccCC-ccccc----cchhhhcCCCCCeeecccCcCccc----cChhhhhCCCCCcEEEccCCcccee----C
Q 038396 41 PPETILYLVSNN-SLTGE----IPSWICNLNTVKNLVLSHNNLSGV----LPQCLGNFSDELSVLDLQGNNFFGT----I 107 (456)
Q Consensus 41 ~~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~----~ 107 (456)
.+.|++|+|++| .+... +...+...++|++|+|++|.+.+. +...+.... .|++|+|++|.|+.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHH
Confidence 566777777777 77642 334556678888888888888643 334444455 788888888888753 3
Q ss_pred CccccCCCCccEEec--cCCcCccc----CCccccCCCCCcEEeCcCCcCC
Q 038396 108 PDTFIKESRLGVIDL--SHNLFQGR----IPRSLVNCSKLEFLDLGNNQIS 152 (456)
Q Consensus 108 ~~~~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~Ls~n~i~ 152 (456)
...+...++|++|++ ++|.++.. +...+...++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 456667788999999 78888753 3345666788999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=1.3e-08 Score=90.73 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCccEEeccCCcCcc--cCCccccCCCCCcEEeCcCCcCCcCCCccccCCC--CCCEEEccCCcccc
Q 038396 114 ESRLGVIDLSHNLFQG--RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTIP--NLNVLILRSNKFYG 177 (456)
Q Consensus 114 l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~ 177 (456)
+++|+.|+|++|++++ .++..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4445555555555543 2223334455555555555555432 1222222 55555555555543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=4.2e-08 Score=87.48 Aligned_cols=104 Identities=26% Similarity=0.300 Sum_probs=67.9
Q ss_pred hhcCCCCCe--eecccCcCccccCh----hhhhCCCCCcEEEccCCcccee--CCccccCCCCccEEeccCCcCcccCCc
Q 038396 62 ICNLNTVKN--LVLSHNNLSGVLPQ----CLGNFSDELSVLDLQGNNFFGT--IPDTFIKESRLGVIDLSHNLFQGRIPR 133 (456)
Q Consensus 62 ~~~l~~L~~--L~Ls~n~l~~~~~~----~~~~l~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 133 (456)
|...+.|+. ++++.|... .++. ....++ +|+.|+|++|.|++. +|..+..+++|+.|+|++|++++. .
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~ 212 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R 212 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h
Confidence 444444544 666777443 2222 223455 788888888888863 345666788888888888888754 2
Q ss_pred cccCCC--CCcEEeCcCCcCCcCCCc-------cccCCCCCCEEE
Q 038396 134 SLVNCS--KLEFLDLGNNQISDTFPS-------WLGTIPNLNVLI 169 (456)
Q Consensus 134 ~l~~l~--~L~~L~Ls~n~i~~~~~~-------~~~~l~~L~~L~ 169 (456)
.+..+. +|++|+|++|.+.+..|+ .+..+++|+.|+
T Consensus 213 ~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 213 ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 333343 888888888888765552 356788888775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.5e-07 Score=76.53 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=70.3
Q ss_pred ccccEEEccCCCCCccCchhhhccCCCCeEeCCCcc-ccccCCccccCC----CCCCeeeCCCC-cccccCchhhhcCCC
Q 038396 265 DILTGIILSSNRFDRVIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNL----TNLESLDLSNN-RFSGQIPQQLVEFTF 338 (456)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~Ls~N-~l~~~~~~~l~~l~~ 338 (456)
..|++||++++.++..--..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++| +|+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999988766778899999999999995 886655666664 47999999998 488655566788999
Q ss_pred CCEEeccCCc
Q 038396 339 LEFFDVSDNY 348 (456)
Q Consensus 339 L~~L~ls~N~ 348 (456)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=3.3e-07 Score=75.76 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=37.2
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCc-CcccCCccccCC----CCCcEEeCcCCc-CCcCCCccccCCCCC
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL-FQGRIPRSLVNC----SKLEFLDLGNNQ-ISDTFPSWLGTIPNL 165 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~Ls~n~-i~~~~~~~~~~l~~L 165 (456)
.|++||+++|.|+..--..+.++++|++|+|++|. +++..-..+..+ ++|++|++++|. |++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555544333334455555555555553 443222223332 245555555543 443322333444555
Q ss_pred CEEEccCC
Q 038396 166 NVLILRSN 173 (456)
Q Consensus 166 ~~L~L~~n 173 (456)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=1.6e-05 Score=66.90 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=70.3
Q ss_pred hhhhcCCCCCeeecccC-cCccc----cChhhhhCCCCCcEEEccCCccceeC----CccccCCCCccEEeccCCcCccc
Q 038396 60 SWICNLNTVKNLVLSHN-NLSGV----LPQCLGNFSDELSVLDLQGNNFFGTI----PDTFIKESRLGVIDLSHNLFQGR 130 (456)
Q Consensus 60 ~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~ 130 (456)
..+.+-+.|++|+|++| .|.+. +..++..-. .|+.|+|++|.|.... ...+..-+.|++|+|+.|.|+..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 34445567788888774 66532 233444444 6888888888776432 23334557788888888887742
Q ss_pred ----CCccccCCCCCcEEeCcCC---cCCcC----CCccccCCCCCCEEEccCCcc
Q 038396 131 ----IPRSLVNCSKLEFLDLGNN---QISDT----FPSWLGTIPNLNVLILRSNKF 175 (456)
Q Consensus 131 ----~~~~l~~l~~L~~L~Ls~n---~i~~~----~~~~~~~l~~L~~L~L~~n~l 175 (456)
+.+++..-+.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345556677888888765 33321 223445567788888876654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.73 E-value=1e-05 Score=68.11 Aligned_cols=110 Identities=6% Similarity=0.030 Sum_probs=62.6
Q ss_pred CCcEEEccCC-cccee----CCccccCCCCccEEeccCCcCcccC----CccccCCCCCcEEeCcCCcCCcCC----Ccc
Q 038396 92 ELSVLDLQGN-NFFGT----IPDTFIKESRLGVIDLSHNLFQGRI----PRSLVNCSKLEFLDLGNNQISDTF----PSW 158 (456)
Q Consensus 92 ~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~n~i~~~~----~~~ 158 (456)
.|++|+|++| .|... +..++..-+.|+.|+|++|++.... ...+..-+.|++|+|++|.|.+.- .++
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 6777777774 66532 3344555677777888877776432 233445577777888877776432 234
Q ss_pred ccCCCCCCEEEccCCcc---cccCCC--CCCccCCCCccEEecccccC
Q 038396 159 LGTIPNLNVLILRSNKF---YGIIKE--PRTDCRFSKLHIIDLSNNRF 201 (456)
Q Consensus 159 ~~~l~~L~~L~L~~n~l---~~~~~~--~~~~~~l~~L~~L~ls~n~l 201 (456)
+..-+.|++|+|++|.. ...... .-....-+.|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 44556677777775432 211000 00113345677777776654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=0.00012 Score=57.58 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=40.3
Q ss_pred eEeCCCcccc-ccCCccccCCCCCCeeeCCCCcccccCchhhhcCCCCCEEeccCCcCcccCC
Q 038396 293 VLNLDNNNLQ-GHIPSCLGNLTNLESLDLSNNRFSGQIPQQLVEFTFLEFFDVSDNYLTGAIP 354 (456)
Q Consensus 293 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~p 354 (456)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.+.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5666666665 23444332 357778888888776556667777888888888888876654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.00056 Score=53.67 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=17.1
Q ss_pred CCcEEEccCCccceeCCccccCCCCccEEeccCCcC
Q 038396 92 ELSVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 127 (456)
Q Consensus 92 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 127 (456)
+|++|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555444444444444444444444443
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=90.30 E-value=0.13 Score=30.87 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=3.9
Q ss_pred hhhhhHHHHH
Q 038396 416 AGGLVTGLVL 425 (456)
Q Consensus 416 ~~~~~~~~~~ 425 (456)
+++++.++++
T Consensus 14 A~gVVgGv~~ 23 (44)
T 2ks1_B 14 ATGMVGALLL 23 (44)
T ss_dssp THHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3444333333
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=90.05 E-value=0.14 Score=30.67 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=6.3
Q ss_pred hhhhhhHHHHHHHHH
Q 038396 415 YAGGLVTGLVLGFNF 429 (456)
Q Consensus 415 ~~~~~~~~~~~~~~~ 429 (456)
++++++.++++++++
T Consensus 12 IA~gVVgGv~~v~ii 26 (44)
T 2l2t_A 12 IAAGVIGGLFILVIV 26 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHH
Confidence 344444444443333
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.59 E-value=0.82 Score=27.44 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=12.8
Q ss_pred eeeehhhhhhhHHHHHHHHH
Q 038396 410 IILIGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (456)
.++.++++|+++.+++++.+
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~ 31 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGI 31 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHHHHHH
Confidence 36677777776666655544
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=74.71 E-value=2.7 Score=24.27 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=7.1
Q ss_pred hhhhhhhHHHHHHHHH
Q 038396 414 GYAGGLVTGLVLGFNF 429 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~ 429 (456)
+...|++++.++++.+
T Consensus 11 GaIAGiVvG~v~gv~l 26 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAAL 26 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHH
Confidence 3344444444444443
No 169
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.14 E-value=2.1 Score=25.64 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=12.3
Q ss_pred eeeehhhhhhhHHHHHHHHH
Q 038396 410 IILIGYAGGLVTGLVLGFNF 429 (456)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (456)
.++.++++|+++.+++++.+
T Consensus 11 aIA~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTF 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHH
Confidence 36677777666655555554
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.13 E-value=6.3 Score=28.58 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=16.9
Q ss_pred CccccCCCCCcEEeCcCCcCCcCCCccccCCCCCCEEEccC
Q 038396 132 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTIPNLNVLILRS 172 (456)
Q Consensus 132 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 172 (456)
..+|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 334444444444444432 2223333444444444444443
No 171
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=72.95 E-value=2.1 Score=25.57 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.4
Q ss_pred hhhhHHHH
Q 038396 417 GGLVTGLV 424 (456)
Q Consensus 417 ~~~~~~~~ 424 (456)
++.++|++
T Consensus 15 a~~vVGvl 22 (44)
T 2jwa_A 15 ISAVVGIL 22 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 172
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=65.90 E-value=1.2 Score=28.94 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=6.5
Q ss_pred hhhhhhhHHHHHHHHHh
Q 038396 414 GYAGGLVTGLVLGFNFS 430 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (456)
++++++.+.+..+++++
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 33333333334444443
No 173
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=62.72 E-value=6.3 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.612 Sum_probs=6.2
Q ss_pred eeeehhhhhhhH
Q 038396 410 IILIGYAGGLVT 421 (456)
Q Consensus 410 ~~~~~~~~~~~~ 421 (456)
.++.|+++|+++
T Consensus 12 ~Iv~gvi~gill 23 (79)
T 2knc_B 12 VVLLSVMGAILL 23 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 344566665543
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.95 E-value=10 Score=27.44 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=31.1
Q ss_pred ccceeCCccccCCCCccEEeccCCcCcccCCccccCCCCCcEEeCcCC
Q 038396 102 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 149 (456)
Q Consensus 102 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~n 149 (456)
.++.+-..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445455567777777777777765 44455667777777777776553
No 175
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=52.27 E-value=14 Score=19.08 Aligned_cols=12 Identities=17% Similarity=0.276 Sum_probs=7.2
Q ss_pred hhhhHhHhhhhh
Q 038396 432 IIVGWFLDKLGM 443 (456)
Q Consensus 432 ~~~~~~~~~~~~ 443 (456)
....|.+++.+|
T Consensus 20 afgfwlfkylqk 31 (32)
T 2lx0_A 20 AFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 345677766654
No 176
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=50.48 E-value=16 Score=20.09 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=9.4
Q ss_pred hhhhhhhHHHHHHHHHh
Q 038396 414 GYAGGLVTGLVLGFNFS 430 (456)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (456)
+++..+++|+++++.++
T Consensus 7 ~malt~i~gl~vif~~l 23 (40)
T 2l9u_A 7 TMALTVIAGLVVIFMML 23 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555566666555553
No 177
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=46.40 E-value=14 Score=24.17 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=4.4
Q ss_pred Ccccceeeeeh
Q 038396 404 GAFDWKIILIG 414 (456)
Q Consensus 404 ~~~~~~~~~~~ 414 (456)
..+.|..+-++
T Consensus 10 F~YDY~tLRig 20 (67)
T 2jp3_A 10 FYYDWESLQLG 20 (67)
T ss_dssp GGGGGHHHHHH
T ss_pred cccchHHheec
Confidence 34444443333
No 178
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=45.83 E-value=12 Score=24.99 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.0
Q ss_pred cCcccceeeeeh
Q 038396 403 SGAFDWKIILIG 414 (456)
Q Consensus 403 ~~~~~~~~~~~~ 414 (456)
...+.|..+-+|
T Consensus 11 pF~YDY~tLRig 22 (74)
T 2zxe_G 11 RFTYDYYRLRVV 22 (74)
T ss_dssp GGCCCHHHHHHH
T ss_pred CcccchHHheec
Confidence 344444443333
No 179
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=45.44 E-value=29 Score=20.56 Aligned_cols=6 Identities=0% Similarity=-0.064 Sum_probs=2.3
Q ss_pred hhhhHH
Q 038396 417 GGLVTG 422 (456)
Q Consensus 417 ~~~~~~ 422 (456)
+|++++
T Consensus 14 ~gvi~~ 19 (43)
T 2k9j_B 14 LSVMGA 19 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 180
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=38.37 E-value=11 Score=24.55 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=5.5
Q ss_pred hhHHHHHHHHH
Q 038396 419 LVTGLVLGFNF 429 (456)
Q Consensus 419 ~~~~~~~~~~~ 429 (456)
+++|.++++++
T Consensus 12 ivlGg~~~lll 22 (70)
T 2klu_A 12 IVLGGVAGLLL 22 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHHHHH
Confidence 34555555544
No 181
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=37.26 E-value=28 Score=22.90 Aligned_cols=8 Identities=25% Similarity=0.048 Sum_probs=3.2
Q ss_pred hHhhhhhH
Q 038396 437 FLDKLGMQ 444 (456)
Q Consensus 437 ~~~~~~~~ 444 (456)
+.+++.++
T Consensus 40 ckCk~~qk 47 (72)
T 2jo1_A 40 CRCKFNQQ 47 (72)
T ss_dssp HHHHHCTT
T ss_pred cccCCCCC
Confidence 33444433
No 182
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=37.12 E-value=11 Score=21.95 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=2.5
Q ss_pred hhhHHHH
Q 038396 418 GLVTGLV 424 (456)
Q Consensus 418 ~~~~~~~ 424 (456)
+++++++
T Consensus 18 ~vv~Gv~ 24 (41)
T 2k9y_A 18 GVAVGVV 24 (41)
T ss_dssp HHHHHHH
T ss_pred ehhHHHH
Confidence 3333333
No 183
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=31.37 E-value=51 Score=18.83 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=4.8
Q ss_pred hhhhhHHHHHHH
Q 038396 416 AGGLVTGLVLGF 427 (456)
Q Consensus 416 ~~~~~~~~~~~~ 427 (456)
..++++|++..+
T Consensus 16 I~~vmaGiIG~I 27 (40)
T 1afo_A 16 IFGVMAGVIGTI 27 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 184
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=30.27 E-value=64 Score=18.12 Aligned_cols=8 Identities=0% Similarity=0.264 Sum_probs=3.4
Q ss_pred hhhhHhHh
Q 038396 432 IIVGWFLD 439 (456)
Q Consensus 432 ~~~~~~~~ 439 (456)
+...|.-+
T Consensus 22 fv~Ay~Qy 29 (37)
T 1q90_G 22 FVTAYLQY 29 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 185
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=29.05 E-value=26 Score=30.01 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhhHhHhhhhhHHHh
Q 038396 424 VLGFNFSSIIVGWFLDKLGMQQIA 447 (456)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~ 447 (456)
++..++.++.++.+++.++.+++.
T Consensus 217 ~il~~l~y~~kr~~W~~vk~~k~~ 240 (248)
T 3cx5_D 217 SSLYLLSIWVKKFKWAGIKTRKFV 240 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHhhhhcccCcee
Confidence 333333344444444554444433
No 186
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=26.03 E-value=42 Score=22.09 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=6.1
Q ss_pred hhhhHhHhhhhh
Q 038396 432 IIVGWFLDKLGM 443 (456)
Q Consensus 432 ~~~~~~~~~~~~ 443 (456)
+..+|+.-+.++
T Consensus 31 i~gcwcylrlqr 42 (90)
T 1zza_A 31 ILGCWCYLRLQR 42 (90)
T ss_dssp HHHHHTTTSSCS
T ss_pred HHHHHHHHHHHH
Confidence 455665544443
No 187
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=23.02 E-value=60 Score=18.25 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=5.7
Q ss_pred ehhhhhhhHHHHHHH
Q 038396 413 IGYAGGLVTGLVLGF 427 (456)
Q Consensus 413 ~~~~~~~~~~~~~~~ 427 (456)
.|++.|++...++++
T Consensus 7 ~GIVlGlipvtl~GL 21 (37)
T 1vf5_G 7 DGLVLGLVFATLGGL 21 (37)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHH
Confidence 344444444444443
No 188
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=23.01 E-value=72 Score=17.60 Aligned_cols=8 Identities=38% Similarity=0.613 Sum_probs=3.0
Q ss_pred hhhhhHHH
Q 038396 416 AGGLVTGL 423 (456)
Q Consensus 416 ~~~~~~~~ 423 (456)
..|++++-
T Consensus 9 IaGIVvgd 16 (33)
T 2l34_A 9 LAGIVVGD 16 (33)
T ss_dssp HHHHHHHH
T ss_pred EEeEeHHH
Confidence 33333333
No 189
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=21.59 E-value=95 Score=18.65 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHhhhhhhHhHh
Q 038396 419 LVTGLVLGFNFSSIIVGWFLD 439 (456)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~ 439 (456)
.+.+.++++++..+.+.|.+|
T Consensus 24 ~IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 24 AIGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555554455555544
Done!