BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038397
         (1102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3 Bound To A Histone Peptide
           Containing Acetylation At Lysine 14
 pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
           Type
 pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing Acetylation At Lysine 16
 pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing N-Terminal Acetylation
           At Serine 1
          Length = 114

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKTEE 713
           C +C + E   +LL C  C +  H  CL PP+ +     WSCH C E  +E
Sbjct: 61  CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111


>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
          Length = 92

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSC 707
           IC++C+  +E  KLL C  C    H  CL+PP+ ++    W C  C
Sbjct: 18  ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63


>pdb|1F62|A Chain A, Wstf-Phd
          Length = 51

 Score = 42.4 bits (98), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKT 711
           C++C  + E  KL+ C  C +  H  CL P + +V   +W C +C+  T
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPAT 51


>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
           MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
           Homolog
          Length = 111

 Score = 41.2 bits (95), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCK 708
           ++C+ C    E  K+L C  C +  H+ CL P +  V  + W C +C+
Sbjct: 55  KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCR 102



 Score = 36.6 bits (83), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCK 708
           C +C+S  +      C+ CGQ  H  CL   +T +  + W C  CK
Sbjct: 10  CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55


>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 226

 Score = 38.9 bits (89), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD-WSCHSCK 708
           C +C   ++  K L C  C    H  CL PP++ V   D W C  C+
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223


>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
          Length = 241

 Score = 38.9 bits (89), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD-WSCHSCK 708
           C +C   ++  K L C  C    H  CL PP++ V   D W C  C+
Sbjct: 193 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239


>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
           Peptide
 pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
           Histone H3 Peptide
 pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
          Length = 69

 Score = 38.5 bits (88), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD-WSCHSCK 708
           C +C   ++  K L C  C    H  CL PP++ V   D W C  C+
Sbjct: 21  CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67


>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
           1-9 Peptide
 pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
           1-9 Peptide
 pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
           H3k4me3 1-9 Peptide
 pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
           H3k4me3 1-9 Peptide
 pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
 pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
 pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 70

 Score = 38.5 bits (88), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD-WSCHSCK 708
           C +C   ++  K L C  C    H  CL PP++ V   D W C  C+
Sbjct: 21  CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67


>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
           Protein 107
          Length = 77

 Score = 37.4 bits (85), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD--WSCHSCK 708
           C +C  + E    L C  C    H  CL PP+ D +P +  W C SCK
Sbjct: 29  CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPL-DKVPEEEYWYCPSCK 75


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
          Length = 184

 Score = 35.8 bits (81), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709
           C +C +  E   LL C  C ++ H  C VP +T+    +W C  C++
Sbjct: 7   CAVCQNGGE---LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50


>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
           Element-Binding Transcription Factor 2
          Length = 66

 Score = 35.8 bits (81), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 662 ICEICNSE--EERKKLLQCSCCGQLVHSGCLVPPI-TDVIPSD--WSCHSC 707
           +C IC  E  E   +++ C  CGQ  H  C  P I + VI SD  W C  C
Sbjct: 8   VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58


>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
 pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
          Length = 61

 Score = 35.0 bits (79), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSC 707
           + C +C    E   LL C  C    H  CL PP+ ++   +W C  C
Sbjct: 10  EFCRVCKDGGE---LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53


>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
           Corepressor
          Length = 88

 Score = 34.7 bits (78), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSC 707
           IC +C   ++   L+ C+ C    H  C +P + DV   +WSC  C
Sbjct: 27  ICRVC---QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69


>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
           Regulator Protein (Aire1): Insights Into Apeced
 pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
           Recognition By The First Phd Finger Of Autoimmune
           Regulator
          Length = 66

 Score = 33.9 bits (76), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 674 KLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKTEEYLQSR 718
           +L+ C  C +  H  CL PP+ ++    W C SC + T + +Q R
Sbjct: 19  ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPR 63


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 33.9 bits (76), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 662 ICEICNSEEERKKLLQCSCCGQL--VHSGCLVPPITDVIPSDWSCHSC 707
           +C ICN E   ++   C C G+L  VH  CL   +T  I  + +C  C
Sbjct: 8   VCWICNEELGNERFRACGCTGELENVHRSCLSTWLT--ISRNTACQIC 53


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
          Length = 61

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEK 710
           CE+C   ++  +++ C  C +  H  CL P +       WSC  C+++
Sbjct: 14  CEVC---QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58


>pdb|3PG6|A Chain A, The Carboxyl Terminal Domain Of Human Deltex 3-Like
 pdb|3PG6|B Chain B, The Carboxyl Terminal Domain Of Human Deltex 3-Like
 pdb|3PG6|C Chain C, The Carboxyl Terminal Domain Of Human Deltex 3-Like
 pdb|3PG6|D Chain D, The Carboxyl Terminal Domain Of Human Deltex 3-Like
          Length = 159

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 866 QASAPEYRIIFT----NLGGERRFASIVAKRLESLGALTQ-----GDRRAGLSLSAYNYD 916
           + + PE  ++FT    +L G   F +IV       G  T+     G R  G+  +AY  D
Sbjct: 26  KGNQPEGSMVFTVSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPD 85

Query: 917 SAFGKKALMMMYRGIMEQDVLPV 939
           +  G+K L ++YR   ++ +  V
Sbjct: 86  NKEGRKVLKLLYRAFDQKLIFTV 108


>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
           Protein
          Length = 72

 Score = 32.3 bits (72), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709
           C+    +++ +++L C  CG   H+ C+     D +PS + C  C E
Sbjct: 19  CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65


>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
           Thioredoxin Family Protein From Chlorobium Tepidum Tls
          Length = 165

 Score = 31.2 bits (69), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%)

Query: 942 PGCSSEKPETIQDFMTKAKAALVSVGIVRDTVLGNGKDYGKLSGRI 987
           P C SE P+ +Q   T A      VGI  +  L N K+Y K  G I
Sbjct: 47  PPCRSEIPDXVQVQKTWASRGFTFVGIAVNEQLPNVKNYXKTQGII 92


>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
           Finger-Bromodomain
          Length = 189

 Score = 31.2 bits (69), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSC 707
           IC +C   ++   L+ C+ C    H  C +P + DV   +WSC  C
Sbjct: 4   ICRVC---QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46


>pdb|1OFW|A Chain A, Three Dimensional Structure Of The Oxidized Form Of Nine
           Heme Cytochrome C At Ph 7.5
 pdb|1OFW|B Chain B, Three Dimensional Structure Of The Oxidized Form Of Nine
           Heme Cytochrome C At Ph 7.5
 pdb|1OFY|A Chain A, Three Dimensional Structure Of The Reduced Form Of
           Nine-Heme Cytochrome C At Ph 7.5
 pdb|1OFY|B Chain B, Three Dimensional Structure Of The Reduced Form Of
           Nine-Heme Cytochrome C At Ph 7.5
          Length = 296

 Score = 30.4 bits (67), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 20  CAGCHIILTVGPGLTEFICGTCN--LPQMLPPEL 51
           CAGCH I+T  P   E  C TC+   P M P ++
Sbjct: 111 CAGCHAIVT--PKRDEAWCATCHNITPSMTPEQM 142


>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
          Length = 57

 Score = 30.0 bits (66), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD-WSCHSCK 708
           C +C   ++  K L C  C    H  CL PP++ V   D W C  C+
Sbjct: 8   CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 54


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
           21a
          Length = 56

 Score = 30.0 bits (66), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 664 EICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEK 710
           + C+   +  +LL C  C ++ H  CL PP+  +    W C  C+++
Sbjct: 10  DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 30.0 bits (66), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 664 EICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEK 710
           + C+   +  +LL C  C ++ H  CL PP+  +    W C  C+++
Sbjct: 6   DFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52


>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
           Human Autoimmune Regulator (Aire) In Complex With
           Histone H3(1-20cys) Peptide
          Length = 56

 Score = 29.6 bits (65), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 674 KLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKT 711
           +L+ C  C +  H  CL PP+ ++    W C SC + T
Sbjct: 16  ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 53


>pdb|4BBQ|A Chain A, Crystal Structure Of The Cxxc And Phd Domain Of Human
           Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
 pdb|4BBQ|B Chain B, Crystal Structure Of The Cxxc And Phd Domain Of Human
           Lysine-Specific Demethylase 2a (Kdm2a)(Fbxl11)
          Length = 117

 Score = 29.6 bits (65), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 673 KKLLQCSCCGQLVHSGCLVPP----ITDVIPSDWSCHSC 707
           KKL++C  C ++VH GCL       + + +P+ W C  C
Sbjct: 73  KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKC 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,143,128
Number of Sequences: 62578
Number of extensions: 1134376
Number of successful extensions: 2601
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2566
Number of HSP's gapped (non-prelim): 40
length of query: 1102
length of database: 14,973,337
effective HSP length: 109
effective length of query: 993
effective length of database: 8,152,335
effective search space: 8095268655
effective search space used: 8095268655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)