Query 038397
Match_columns 1102
No_of_seqs 220 out of 350
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z63_A Helicase of the SNF2/RA 99.7 2.1E-15 7.1E-20 174.7 26.8 228 215-486 36-279 (500)
2 1wp9_A ATP-dependent RNA helic 99.5 1.1E-12 3.9E-17 146.8 26.0 220 216-492 9-230 (494)
3 3mwy_W Chromo domain-containin 99.5 6.2E-12 2.1E-16 155.4 31.0 236 213-485 233-491 (800)
4 1z3i_X Similar to RAD54-like; 99.5 2.1E-11 7.1E-16 147.4 34.1 238 215-485 54-331 (644)
5 3dmq_A RNA polymerase-associat 99.3 7.7E-11 2.6E-15 148.7 26.1 191 216-432 153-345 (968)
6 2oca_A DAR protein, ATP-depend 99.1 1.1E-09 3.8E-14 127.2 20.4 149 216-402 113-263 (510)
7 4a2p_A RIG-I, retinoic acid in 99.0 3E-08 1E-12 114.9 25.0 162 216-402 7-177 (556)
8 2fwr_A DNA repair protein RAD2 99.0 3.1E-09 1E-13 122.3 16.5 139 215-403 92-230 (472)
9 3tbk_A RIG-I helicase domain; 99.0 5.7E-08 2E-12 112.2 26.1 162 217-403 5-176 (555)
10 4a2q_A RIG-I, retinoic acid in 99.0 3.7E-08 1.3E-12 121.6 25.2 170 207-402 239-418 (797)
11 3h1t_A Type I site-specific re 99.0 3.3E-08 1.1E-12 117.4 23.8 156 216-402 178-342 (590)
12 1xti_A Probable ATP-dependent 99.0 3.5E-08 1.2E-12 109.2 22.0 155 216-401 30-194 (391)
13 3pey_A ATP-dependent RNA helic 98.9 1E-07 3.5E-12 105.0 24.3 157 216-401 27-187 (395)
14 4gl2_A Interferon-induced heli 98.9 1.4E-07 4.8E-12 113.6 26.3 169 216-403 7-193 (699)
15 1hv8_A Putative ATP-dependent 98.9 9.6E-08 3.3E-12 104.2 21.7 157 216-401 28-188 (367)
16 4a2w_A RIG-I, retinoic acid in 98.9 1.3E-07 4.4E-12 119.1 24.7 163 214-402 246-418 (936)
17 1s2m_A Putative ATP-dependent 98.8 1.2E-07 4E-12 105.7 20.7 156 216-400 43-203 (400)
18 1rif_A DAR protein, DNA helica 98.6 4.1E-07 1.4E-11 98.1 14.1 156 216-409 113-270 (282)
19 3oiy_A Reverse gyrase helicase 98.4 3.4E-05 1.2E-09 87.0 24.0 77 805-894 290-376 (414)
20 3b6e_A Interferon-induced heli 98.3 6.8E-07 2.3E-11 90.9 7.0 137 216-365 33-175 (216)
21 2eyq_A TRCF, transcription-rep 98.2 5.3E-05 1.8E-09 97.6 22.4 155 216-402 603-762 (1151)
22 2gxq_A Heat resistant RNA depe 98.2 1.2E-06 3.9E-11 89.1 5.6 162 216-407 23-191 (207)
23 1qde_A EIF4A, translation init 98.2 4.1E-06 1.4E-10 86.4 9.7 162 216-407 36-202 (224)
24 1vec_A ATP-dependent RNA helic 98.2 2.5E-06 8.5E-11 86.7 7.4 163 216-407 25-193 (206)
25 3iuy_A Probable ATP-dependent 98.1 1.8E-06 6E-11 89.7 6.0 166 216-409 42-216 (228)
26 1q0u_A Bstdead; DEAD protein, 98.1 2.4E-06 8.1E-11 88.4 6.5 162 216-406 26-196 (219)
27 1t6n_A Probable ATP-dependent 98.1 4.4E-06 1.5E-10 86.1 8.1 162 217-409 37-208 (220)
28 2ykg_A Probable ATP-dependent 98.0 1.1E-05 3.7E-10 97.2 10.3 161 216-402 13-184 (696)
29 2fz4_A DNA repair protein RAD2 98.0 1.4E-05 4.7E-10 84.9 9.4 138 215-402 92-229 (237)
30 1wrb_A DJVLGB; RNA helicase, D 98.0 1.3E-05 4.3E-10 84.7 8.9 160 216-404 45-222 (253)
31 2oxc_A Probable ATP-dependent 98.0 8.9E-06 3E-10 85.0 7.3 160 216-404 46-211 (230)
32 2pl3_A Probable ATP-dependent 97.9 1.4E-05 4.7E-10 83.5 8.0 161 216-407 47-218 (236)
33 3fho_A ATP-dependent RNA helic 97.9 2.2E-05 7.7E-10 92.0 10.5 157 216-401 141-301 (508)
34 3ber_A Probable ATP-dependent 97.9 9.1E-06 3.1E-10 86.5 6.4 160 216-408 65-234 (249)
35 3fht_A ATP-dependent RNA helic 97.9 3.7E-05 1.3E-09 85.4 11.2 158 216-401 47-210 (412)
36 3bor_A Human initiation factor 97.9 1.5E-05 5.2E-10 83.7 7.6 165 216-409 52-222 (237)
37 2j0s_A ATP-dependent RNA helic 97.9 1.5E-05 5.3E-10 89.1 7.9 157 216-401 59-220 (410)
38 3eiq_A Eukaryotic initiation f 97.8 2.4E-05 8E-10 87.3 7.7 157 216-401 62-224 (414)
39 2z0m_A 337AA long hypothetical 97.8 2.5E-05 8.5E-10 84.2 7.5 152 216-401 16-170 (337)
40 1fuu_A Yeast initiation factor 97.7 2.7E-05 9.3E-10 86.0 6.7 156 216-401 43-203 (394)
41 2va8_A SSO2462, SKI2-type heli 97.7 5.8E-05 2E-09 91.8 9.5 156 216-401 30-185 (715)
42 2p6r_A Afuhel308 helicase; pro 97.7 0.00013 4.3E-09 88.8 11.9 158 216-401 25-182 (702)
43 3fmp_B ATP-dependent RNA helic 97.7 8.3E-05 2.8E-09 85.7 9.4 158 216-401 114-277 (479)
44 2e6r_A Jumonji/ARID domain-con 97.7 1.7E-05 5.8E-10 73.7 2.8 51 659-709 15-65 (92)
45 3dkp_A Probable ATP-dependent 97.6 8E-05 2.7E-09 78.1 7.2 168 216-407 51-226 (245)
46 3fmo_B ATP-dependent RNA helic 97.6 0.00011 3.7E-09 80.7 8.1 166 216-409 114-285 (300)
47 2xgj_A ATP-dependent RNA helic 97.5 0.0002 7E-09 91.1 10.5 145 217-400 87-232 (1010)
48 2zj8_A DNA helicase, putative 97.5 0.00021 7.3E-09 87.1 9.8 154 216-400 23-178 (720)
49 3fe2_A Probable ATP-dependent 97.5 5.4E-05 1.8E-09 79.6 3.8 162 216-409 51-225 (242)
50 3ly5_A ATP-dependent RNA helic 97.4 0.00015 5.1E-09 77.7 6.8 162 216-409 76-250 (262)
51 2db3_A ATP-dependent RNA helic 97.4 0.00015 5.1E-09 83.2 7.2 157 216-401 78-246 (434)
52 2p6n_A ATP-dependent RNA helic 97.4 0.00012 4E-09 75.4 5.5 81 806-897 98-178 (191)
53 3l9o_A ATP-dependent RNA helic 97.4 0.0005 1.7E-08 88.3 12.4 146 216-400 184-330 (1108)
54 1z5z_A Helicase of the SNF2/RA 97.4 5.5E-05 1.9E-09 82.3 3.0 88 806-902 157-247 (271)
55 2hjv_A ATP-dependent RNA helic 97.4 0.00026 8.9E-09 70.4 7.4 76 806-893 79-154 (163)
56 1t5i_A C_terminal domain of A 97.4 0.00017 5.9E-09 72.6 5.8 77 806-893 75-151 (172)
57 1mm2_A MI2-beta; PHD, zinc fin 97.3 0.00012 4.1E-09 63.0 3.5 47 660-709 9-55 (61)
58 4a4z_A Antiviral helicase SKI2 97.3 0.00054 1.9E-08 87.1 10.7 147 217-400 40-187 (997)
59 2yql_A PHD finger protein 21A; 97.3 9.6E-05 3.3E-09 62.4 2.4 46 660-708 9-54 (56)
60 2i4i_A ATP-dependent RNA helic 97.3 0.00029 1E-08 78.6 6.8 78 806-895 320-397 (417)
61 2w00_A HSDR, R.ECOR124I; ATP-b 97.3 0.00059 2E-08 87.1 10.3 162 216-404 271-441 (1038)
62 2jgn_A DBX, DDX3, ATP-dependen 97.2 0.00041 1.4E-08 70.9 7.3 79 805-895 89-167 (185)
63 1fp0_A KAP-1 corepressor; PHD 97.2 0.00015 5E-09 67.0 3.2 46 661-709 26-71 (88)
64 1f62_A Transcription factor WS 97.2 2.8E-05 9.5E-10 64.2 -1.7 47 663-709 3-49 (51)
65 3i5x_A ATP-dependent RNA helic 97.2 0.00059 2E-08 80.2 8.4 161 216-403 94-276 (563)
66 3llm_A ATP-dependent RNA helic 97.2 0.00092 3.1E-08 70.2 9.0 134 244-404 79-221 (235)
67 3sqw_A ATP-dependent RNA helic 97.1 0.00062 2.1E-08 80.9 8.4 164 216-403 43-225 (579)
68 2lri_C Autoimmune regulator; Z 97.1 9.7E-05 3.3E-09 64.7 1.0 46 661-709 13-58 (66)
69 4ddu_A Reverse gyrase; topoiso 97.1 0.00066 2.2E-08 87.2 8.3 127 217-365 79-209 (1104)
70 1fuk_A Eukaryotic initiation f 97.1 0.00034 1.2E-08 69.5 4.5 73 806-890 74-146 (165)
71 3shb_A E3 ubiquitin-protein li 97.1 0.00014 4.8E-09 65.6 1.3 47 662-708 28-75 (77)
72 1wev_A Riken cDNA 1110020M19; 97.0 7.7E-05 2.6E-09 68.7 -0.7 50 660-709 16-71 (88)
73 3asl_A E3 ubiquitin-protein li 97.0 0.00016 5.6E-09 63.9 0.9 48 662-709 20-68 (70)
74 3eaq_A Heat resistant RNA depe 96.9 0.001 3.5E-08 69.3 6.6 76 806-893 75-150 (212)
75 1xwh_A Autoimmune regulator; P 96.9 0.00028 9.5E-09 61.5 1.9 46 661-709 9-54 (66)
76 2puy_A PHD finger protein 21A; 96.9 0.00025 8.6E-09 60.6 1.6 46 661-709 6-51 (60)
77 3ask_A E3 ubiquitin-protein li 96.9 0.00019 6.3E-09 76.7 0.9 48 662-709 176-224 (226)
78 2e6s_A E3 ubiquitin-protein li 96.9 0.0002 6.7E-09 64.6 0.7 47 662-708 28-75 (77)
79 2yjt_D ATP-dependent RNA helic 95.9 0.00017 5.7E-09 72.3 0.0 54 806-867 74-127 (170)
80 3u5n_A E3 ubiquitin-protein li 96.8 0.0003 1E-08 74.0 1.2 45 662-709 9-53 (207)
81 2kwj_A Zinc finger protein DPF 96.8 0.00028 9.7E-09 67.7 0.9 50 662-711 60-109 (114)
82 2yt5_A Metal-response element- 96.8 0.00019 6.6E-09 62.2 -0.3 49 661-709 7-60 (66)
83 2l5u_A Chromodomain-helicase-D 96.7 0.00044 1.5E-08 59.5 1.6 46 661-709 12-57 (61)
84 2z0m_A 337AA long hypothetical 96.7 0.00084 2.9E-08 72.3 4.2 75 806-893 260-334 (337)
85 2rb4_A ATP-dependent RNA helic 96.7 0.0021 7.3E-08 64.4 6.9 76 806-893 78-159 (175)
86 1oyw_A RECQ helicase, ATP-depe 96.6 0.0021 7.3E-08 75.9 6.9 155 216-402 25-185 (523)
87 1gm5_A RECG; helicase, replica 96.5 0.0022 7.4E-08 79.7 6.6 150 216-401 368-526 (780)
88 2l43_A N-teminal domain from h 96.4 0.00053 1.8E-08 63.2 -0.1 47 661-709 26-74 (88)
89 2jlq_A Serine protease subunit 96.3 0.019 6.5E-07 66.3 12.7 62 805-867 227-300 (451)
90 2db3_A ATP-dependent RNA helic 96.3 0.0054 1.9E-07 70.2 7.9 79 806-895 344-422 (434)
91 2z83_A Helicase/nucleoside tri 96.3 0.012 4.1E-07 68.3 10.3 72 806-878 230-313 (459)
92 2whx_A Serine protease/ntpase/ 96.2 0.023 7.8E-07 68.7 12.7 87 806-893 395-493 (618)
93 3v43_A Histone acetyltransfera 96.2 0.00094 3.2E-08 63.9 0.4 48 662-709 63-111 (112)
94 3o36_A Transcription intermedi 96.2 0.0013 4.6E-08 67.7 1.5 45 662-709 6-50 (184)
95 2v1x_A ATP-dependent DNA helic 96.2 0.016 5.4E-07 69.7 11.0 160 216-401 44-210 (591)
96 2i4i_A ATP-dependent RNA helic 96.1 0.0054 1.8E-07 68.4 6.1 157 216-401 37-220 (417)
97 3i32_A Heat resistant RNA depe 96.1 0.0056 1.9E-07 67.7 5.9 76 806-893 72-147 (300)
98 2ku3_A Bromodomain-containing 96.0 0.00064 2.2E-08 60.3 -1.5 47 661-709 17-65 (71)
99 3eiq_A Eukaryotic initiation f 96.0 0.0058 2E-07 67.9 5.6 75 806-892 324-398 (414)
100 2ro1_A Transcription intermedi 95.9 0.0025 8.6E-08 66.3 2.4 44 662-708 4-47 (189)
101 2ysm_A Myeloid/lymphoid or mix 95.9 0.0011 3.9E-08 62.9 -0.4 48 662-709 56-103 (111)
102 2z83_A Helicase/nucleoside tri 95.9 0.01 3.5E-07 68.8 7.4 133 243-405 23-157 (459)
103 2j0s_A ATP-dependent RNA helic 95.9 0.0035 1.2E-07 70.0 3.3 54 806-867 320-373 (410)
104 2v6i_A RNA helicase; membrane, 95.9 0.042 1.4E-06 63.2 12.3 91 805-896 210-311 (431)
105 2lv9_A Histone-lysine N-methyl 95.8 0.0028 9.5E-08 59.4 1.9 50 658-709 26-75 (98)
106 2xau_A PRE-mRNA-splicing facto 95.8 0.029 9.8E-07 69.6 11.1 59 806-864 358-431 (773)
107 2k16_A Transcription initiatio 95.7 0.0013 4.6E-08 58.3 -0.6 52 659-710 17-68 (75)
108 2wv9_A Flavivirin protease NS2 95.6 0.044 1.5E-06 67.0 11.5 87 806-893 450-548 (673)
109 3fht_A ATP-dependent RNA helic 95.3 0.024 8.3E-07 62.8 7.2 77 806-893 310-392 (412)
110 1fuu_A Yeast initiation factor 95.2 0.0035 1.2E-07 69.1 0.0 61 806-875 303-363 (394)
111 1yks_A Genome polyprotein [con 95.0 0.033 1.1E-06 64.3 7.7 84 806-893 217-314 (440)
112 3sqw_A ATP-dependent RNA helic 94.9 0.036 1.2E-06 65.7 7.8 76 806-893 335-410 (579)
113 1yks_A Genome polyprotein [con 94.8 0.043 1.5E-06 63.3 7.8 133 244-409 12-148 (440)
114 2wv9_A Flavivirin protease NS2 94.7 0.11 3.9E-06 63.4 11.6 132 244-409 244-381 (673)
115 2v6i_A RNA helicase; membrane, 94.7 0.072 2.4E-06 61.2 9.3 128 245-403 6-136 (431)
116 3i5x_A ATP-dependent RNA helic 94.7 0.047 1.6E-06 64.0 7.8 75 806-892 386-460 (563)
117 4f92_B U5 small nuclear ribonu 94.4 0.24 8.1E-06 66.6 14.4 160 216-401 79-254 (1724)
118 2whx_A Serine protease/ntpase/ 94.1 0.057 2E-06 65.3 7.0 133 244-406 189-323 (618)
119 3o8b_A HCV NS3 protease/helica 94.1 0.13 4.6E-06 62.8 10.1 124 242-402 234-361 (666)
120 2jlq_A Serine protease subunit 94.0 0.096 3.3E-06 60.5 8.4 129 245-403 23-153 (451)
121 1oyw_A RECQ helicase, ATP-depe 93.7 0.061 2.1E-06 63.5 6.0 53 806-866 280-332 (523)
122 4f92_B U5 small nuclear ribonu 93.2 0.2 6.8E-06 67.3 10.4 144 241-401 942-1093(1724)
123 1gku_B Reverse gyrase, TOP-RG; 93.2 0.23 8E-06 63.6 10.7 149 219-408 59-231 (1054)
124 2ysm_A Myeloid/lymphoid or mix 93.1 0.029 9.9E-07 53.2 1.6 48 661-708 8-55 (111)
125 2v1x_A ATP-dependent DNA helic 92.2 0.14 4.8E-06 61.5 6.3 61 806-877 311-371 (591)
126 1pft_A TFIIB, PFTFIIBN; N-term 92.1 0.086 2.9E-06 43.2 3.0 28 16-43 4-32 (50)
127 3h0g_L DNA-directed RNA polyme 92.1 0.061 2.1E-06 46.8 2.2 38 10-48 14-51 (63)
128 2p6r_A Afuhel308 helicase; pro 92.0 0.1 3.5E-06 63.4 4.9 61 806-867 316-376 (702)
129 3rc3_A ATP-dependent RNA helic 92.0 0.17 5.7E-06 62.0 6.7 72 806-878 364-443 (677)
130 2vl7_A XPD; helicase, unknown 91.9 0.29 9.9E-06 58.0 8.5 50 243-296 28-77 (540)
131 2va8_A SSO2462, SKI2-type heli 91.6 0.15 5.2E-06 61.9 5.7 62 806-867 332-396 (715)
132 2xgj_A ATP-dependent RNA helic 91.2 0.091 3.1E-06 67.1 3.3 68 806-878 426-497 (1010)
133 3fho_A ATP-dependent RNA helic 91.1 0.12 4E-06 60.6 3.9 75 806-891 401-481 (508)
134 2ykg_A Probable ATP-dependent 90.3 0.068 2.3E-06 64.3 0.9 60 806-877 454-514 (696)
135 2zj8_A DNA helicase, putative 89.9 0.23 7.8E-06 60.6 5.1 60 806-866 314-374 (720)
136 2xau_A PRE-mRNA-splicing facto 89.5 0.36 1.2E-05 59.9 6.5 152 218-401 95-250 (773)
137 1wen_A Inhibitor of growth fam 88.8 0.16 5.6E-06 44.8 2.0 46 660-709 16-64 (71)
138 3fmp_B ATP-dependent RNA helic 88.1 0.094 3.2E-06 60.3 0.0 53 806-866 377-435 (479)
139 3h0g_I DNA-directed RNA polyme 88.0 0.74 2.5E-05 44.1 6.1 29 20-48 7-39 (113)
140 1weu_A Inhibitor of growth fam 86.2 0.74 2.5E-05 42.7 4.8 47 659-709 35-84 (91)
141 1vq8_Z 50S ribosomal protein L 86.1 0.27 9.1E-06 45.0 1.7 29 17-45 27-55 (83)
142 3crv_A XPD/RAD3 related DNA he 85.6 2.2 7.4E-05 50.5 9.8 48 244-295 25-72 (551)
143 3rc3_A ATP-dependent RNA helic 85.2 2.1 7.1E-05 52.5 9.5 120 241-400 155-280 (677)
144 1gm5_A RECG; helicase, replica 83.5 0.69 2.4E-05 57.5 4.3 63 805-878 632-695 (780)
145 3l9o_A ATP-dependent RNA helic 83.3 0.51 1.7E-05 60.9 3.2 74 806-880 524-597 (1108)
146 2lbm_A Transcriptional regulat 82.7 0.24 8.1E-06 49.5 -0.2 46 662-710 65-117 (142)
147 3o8b_A HCV NS3 protease/helica 82.4 1.3 4.5E-05 54.2 6.1 65 808-877 435-513 (666)
148 1twf_I B12.6, DNA-directed RNA 82.1 0.8 2.7E-05 44.4 3.3 30 19-48 6-39 (122)
149 2vnf_A ING 4, P29ING4, inhibit 81.2 0.2 6.9E-06 42.8 -1.1 45 661-709 11-58 (60)
150 3qt1_I DNA-directed RNA polyme 81.2 0.5 1.7E-05 46.7 1.5 35 15-49 21-60 (133)
151 1c4o_A DNA nucleotide excision 80.9 1.9 6.5E-05 52.5 6.8 52 806-865 483-539 (664)
152 4gne_A Histone-lysine N-methyl 80.5 0.48 1.6E-05 45.2 1.1 42 662-708 17-60 (107)
153 4a4z_A Antiviral helicase SKI2 79.5 1.3 4.5E-05 56.5 4.9 70 806-877 419-489 (997)
154 2jmi_A Protein YNG1, ING1 homo 79.2 0.44 1.5E-05 44.2 0.4 47 659-709 25-75 (90)
155 3j20_W 30S ribosomal protein S 78.8 1.3 4.5E-05 38.5 3.1 37 11-47 9-46 (63)
156 2d7d_A Uvrabc system protein B 78.8 2.2 7.5E-05 51.9 6.4 51 806-864 489-544 (661)
157 1gku_B Reverse gyrase, TOP-RG; 78.4 2.2 7.6E-05 54.7 6.6 87 806-895 313-468 (1054)
158 2yrc_A Protein transport prote 78.1 0.75 2.6E-05 39.4 1.4 36 17-52 9-50 (59)
159 4ayb_P DNA-directed RNA polyme 77.2 0.69 2.4E-05 37.9 0.9 29 19-47 5-35 (48)
160 1twf_L ABC10-alpha, DNA-direct 75.4 1.7 5.8E-05 38.5 3.0 33 14-47 25-57 (70)
161 2kdx_A HYPA, hydrogenase/ureas 74.7 1.2 4E-05 42.8 2.0 29 15-45 71-100 (119)
162 3syl_A Protein CBBX; photosynt 73.9 12 0.00042 39.8 10.0 24 340-366 121-144 (309)
163 3k1f_M Transcription initiatio 73.8 1.3 4.4E-05 45.7 2.1 45 1-45 1-52 (197)
164 3a43_A HYPD, hydrogenase nicke 73.6 1.3 4.3E-05 43.9 1.9 31 15-45 68-117 (139)
165 2js4_A UPF0434 protein BB2007; 73.1 1.5 5E-05 38.9 2.0 28 18-45 9-36 (70)
166 3iz6_X 40S ribosomal protein S 72.8 2.6 9E-05 38.6 3.6 37 11-47 30-67 (86)
167 2xzm_6 RPS27E; ribosome, trans 72.8 1.9 6.4E-05 39.2 2.6 38 10-47 25-63 (81)
168 1wee_A PHD finger family prote 72.8 0.89 3E-05 39.9 0.5 51 658-709 14-65 (72)
169 2pk7_A Uncharacterized protein 72.6 1.4 4.8E-05 38.9 1.8 29 18-46 9-37 (69)
170 3u5c_b RP61, YS20, 40S ribosom 72.4 2.3 7.7E-05 38.7 3.1 37 11-47 28-65 (82)
171 2hf1_A Tetraacyldisaccharide-1 71.9 1.4 4.7E-05 38.8 1.6 30 18-47 9-38 (68)
172 1gh9_A 8.3 kDa protein (gene M 71.6 1.1 3.7E-05 39.8 0.8 29 17-47 4-32 (71)
173 2jr6_A UPF0434 protein NMA0874 71.4 1.5 5.1E-05 38.6 1.6 29 18-46 9-37 (68)
174 3j20_Y 30S ribosomal protein S 70.7 1.2 4.1E-05 36.9 0.9 25 20-44 22-46 (50)
175 1qxf_A GR2, 30S ribosomal prot 70.1 2.2 7.4E-05 37.4 2.3 34 14-47 4-38 (66)
176 3c6w_A P28ING5, inhibitor of g 69.5 0.61 2.1E-05 39.7 -1.2 45 661-709 10-57 (59)
177 3eh1_A Protein transport prote 69.4 2 6.8E-05 53.3 2.8 34 17-51 85-122 (751)
178 1fnn_A CDC6P, cell division co 68.9 28 0.00095 37.9 11.6 46 243-289 47-93 (389)
179 1pcx_A Protein transport prote 67.9 2.1 7.2E-05 53.5 2.5 35 17-51 112-150 (810)
180 4b3f_X DNA-binding protein smu 67.3 7.8 0.00027 46.7 7.3 71 215-296 188-259 (646)
181 2qby_B CDC6 homolog 3, cell di 67.3 12 0.00042 40.9 8.3 25 341-366 123-147 (384)
182 2jny_A Uncharacterized BCR; st 66.5 2.1 7.2E-05 37.6 1.6 30 18-47 11-40 (67)
183 3eh2_A Protein transport prote 65.6 2.7 9.2E-05 52.3 2.8 35 17-51 94-132 (766)
184 2g6q_A Inhibitor of growth pro 65.3 0.87 3E-05 39.2 -1.1 45 661-709 12-59 (62)
185 3h0g_L DNA-directed RNA polyme 64.1 4.1 0.00014 35.4 2.9 32 94-126 19-50 (63)
186 3efo_B SEC24 related gene fami 63.7 2.7 9.4E-05 52.2 2.4 35 17-51 98-136 (770)
187 4bbr_M Transcription initiatio 63.4 2.3 7.7E-05 48.0 1.5 44 1-44 1-51 (345)
188 1m2v_B SEC24, protein transpor 63.3 2.9 0.0001 53.0 2.6 35 17-51 228-266 (926)
189 1dl6_A Transcription factor II 63.1 3.2 0.00011 35.3 2.0 28 18-45 12-40 (58)
190 4ayb_P DNA-directed RNA polyme 62.1 3.9 0.00013 33.6 2.2 30 97-126 4-35 (48)
191 3o70_A PHD finger protein 13; 62.1 1.8 6E-05 37.9 0.2 47 661-709 20-66 (68)
192 3vfd_A Spastin; ATPase, microt 61.9 13 0.00043 41.8 7.2 91 340-431 195-289 (389)
193 3upu_A ATP-dependent DNA helic 61.0 9.6 0.00033 43.9 6.2 61 216-281 25-85 (459)
194 2kwj_A Zinc finger protein DPF 60.9 0.91 3.1E-05 43.3 -2.0 36 673-708 21-59 (114)
195 1jbk_A CLPB protein; beta barr 60.5 23 0.00078 33.8 7.9 29 339-367 101-130 (195)
196 2kdx_A HYPA, hydrogenase/ureas 59.6 4.7 0.00016 38.5 2.8 29 94-124 71-100 (119)
197 1vq8_Z 50S ribosomal protein L 58.8 2.8 9.4E-05 38.3 0.9 30 96-125 27-56 (83)
198 2o0j_A Terminase, DNA packagin 58.5 26 0.00088 40.1 9.0 39 244-282 181-220 (385)
199 3jux_A Protein translocase sub 58.4 23 0.00079 44.1 9.0 89 806-897 518-607 (822)
200 2v1u_A Cell division control p 58.3 89 0.0031 33.7 13.1 59 219-280 25-88 (387)
201 3h4m_A Proteasome-activating n 58.0 41 0.0014 35.3 10.0 28 340-367 98-125 (285)
202 1pft_A TFIIB, PFTFIIBN; N-term 57.6 5.2 0.00018 32.5 2.3 28 96-123 5-33 (50)
203 3a43_A HYPD, hydrogenase nicke 57.2 4.3 0.00015 40.1 2.1 30 94-123 68-116 (139)
204 3eie_A Vacuolar protein sortin 56.7 70 0.0024 34.7 11.9 30 339-368 97-126 (322)
205 2nut_A Protein transport prote 56.3 7.9 0.00027 48.1 4.7 32 217-248 143-174 (769)
206 3hgt_A HDA1 complex subunit 3; 56.0 11 0.00039 42.3 5.4 64 811-883 169-242 (328)
207 1yuz_A Nigerythrin; rubrythrin 55.9 5.1 0.00017 42.0 2.4 26 95-123 170-195 (202)
208 1we9_A PHD finger family prote 55.8 1.8 6.3E-05 36.8 -0.8 50 660-709 6-57 (64)
209 2qz4_A Paraplegin; AAA+, SPG7, 55.5 54 0.0018 33.7 10.2 28 340-367 86-113 (262)
210 2k4x_A 30S ribosomal protein S 54.9 2.8 9.6E-05 35.4 0.3 27 19-45 20-46 (55)
211 4a15_A XPD helicase, ATP-depen 54.6 5.9 0.0002 47.8 3.1 52 243-294 24-75 (620)
212 3cpe_A Terminase, DNA packagin 54.6 43 0.0015 39.9 10.5 52 241-293 179-231 (592)
213 1twf_L ABC10-alpha, DNA-direct 53.6 8.6 0.00029 34.0 3.2 34 92-126 24-57 (70)
214 1wii_A Hypothetical UPF0222 pr 53.6 3.9 0.00013 37.5 1.0 30 97-126 24-59 (85)
215 1m2o_A SEC23, protein transpor 53.1 9.3 0.00032 47.4 4.6 31 218-248 133-163 (768)
216 1gh9_A 8.3 kDa protein (gene M 52.9 4.6 0.00016 35.9 1.3 36 96-135 4-39 (71)
217 2k2d_A Ring finger and CHY zin 52.9 6.8 0.00023 35.4 2.4 33 14-46 34-66 (79)
218 4fcw_A Chaperone protein CLPB; 52.4 68 0.0023 33.9 10.7 22 344-365 111-132 (311)
219 2fiy_A Protein FDHE homolog; F 52.1 5.4 0.00019 44.5 2.0 26 94-123 206-231 (309)
220 3t15_A Ribulose bisphosphate c 51.7 44 0.0015 36.0 9.1 24 241-264 36-59 (293)
221 1s24_A Rubredoxin 2; electron 51.5 8.1 0.00028 35.6 2.7 30 16-45 34-78 (87)
222 1wew_A DNA-binding family prot 51.1 2.3 7.9E-05 37.9 -0.9 50 659-709 15-71 (78)
223 1wem_A Death associated transc 50.6 1.2 3.9E-05 39.5 -3.0 49 660-709 16-69 (76)
224 2ct7_A Ring finger protein 31; 50.3 7.3 0.00025 35.2 2.2 27 17-43 24-51 (86)
225 3pwf_A Rubrerythrin; non heme 50.0 7.1 0.00024 39.8 2.3 26 95-123 137-162 (170)
226 2gk6_A Regulator of nonsense t 49.3 34 0.0012 41.1 8.5 71 216-296 180-250 (624)
227 2akl_A PHNA-like protein PA012 49.0 4 0.00014 40.2 0.3 27 19-46 29-55 (138)
228 3j20_W 30S ribosomal protein S 48.5 8.8 0.0003 33.4 2.3 34 95-128 14-48 (63)
229 2lcq_A Putative toxin VAPC6; P 48.3 7.6 0.00026 38.8 2.3 28 95-124 131-158 (165)
230 2kn9_A Rubredoxin; metalloprot 48.2 8.7 0.0003 35.0 2.4 30 16-45 26-70 (81)
231 1xwi_A SKD1 protein; VPS4B, AA 48.1 1.2E+02 0.004 33.1 12.0 88 340-430 93-185 (322)
232 2ri7_A Nucleosome-remodeling f 47.9 2.7 9.4E-05 42.4 -1.1 51 660-711 8-60 (174)
233 2co8_A NEDD9 interacting prote 47.7 11 0.00039 33.2 3.0 39 6-44 4-51 (82)
234 3v43_A Histone acetyltransfera 47.5 0.98 3.3E-05 42.9 -4.2 36 673-708 24-62 (112)
235 1lko_A Rubrerythrin all-iron(I 47.5 6.9 0.00024 40.4 1.9 26 96-123 155-180 (191)
236 2rsd_A E3 SUMO-protein ligase 47.2 4.2 0.00014 35.3 0.1 47 661-708 11-63 (68)
237 2jrp_A Putative cytoplasmic pr 46.7 9 0.00031 34.9 2.2 42 35-126 2-43 (81)
238 1m2o_A SEC23, protein transpor 46.2 11 0.00038 46.8 3.7 36 17-52 53-94 (768)
239 2xzl_A ATP-dependent helicase 45.7 32 0.0011 42.9 7.7 88 199-296 341-430 (802)
240 2dr3_A UPF0273 protein PH0284; 45.4 2.5E+02 0.0085 28.2 14.2 50 244-296 27-76 (247)
241 6rxn_A Rubredoxin; electron tr 45.4 9.5 0.00032 31.2 1.9 27 97-123 5-39 (46)
242 3j20_Y 30S ribosomal protein S 44.2 7.5 0.00026 32.2 1.2 32 92-123 15-46 (50)
243 2w00_A HSDR, R.ECOR124I; ATP-b 43.7 18 0.00062 46.5 5.1 52 806-866 643-694 (1038)
244 3b9p_A CG5977-PA, isoform A; A 42.8 65 0.0022 34.0 8.7 62 341-402 102-168 (297)
245 2dlq_A GLI-kruppel family memb 42.8 4.8 0.00016 36.6 -0.2 31 96-126 66-106 (124)
246 2p65_A Hypothetical protein PF 41.8 57 0.0019 31.1 7.3 28 340-367 102-130 (187)
247 1wfp_A Zinc finger (AN1-like) 41.8 11 0.00038 33.7 2.0 28 11-43 19-46 (74)
248 2nut_A Protein transport prote 41.3 14 0.00046 46.1 3.4 36 17-52 62-103 (769)
249 2eo2_A Adult MALE hypothalamus 40.9 3.2 0.00011 36.7 -1.6 38 862-899 6-43 (71)
250 1g5t_A COB(I)alamin adenosyltr 40.8 1E+02 0.0036 32.0 9.5 126 246-399 33-161 (196)
251 3ql9_A Transcriptional regulat 40.1 2.9 9.8E-05 41.1 -2.2 45 663-710 60-111 (129)
252 2kpi_A Uncharacterized protein 39.8 12 0.00041 31.6 1.8 27 18-46 11-39 (56)
253 3na7_A HP0958; flagellar bioge 39.7 5.2 0.00018 43.0 -0.6 32 19-50 200-237 (256)
254 1qyp_A RNA polymerase II; tran 39.6 14 0.00048 30.8 2.2 29 16-44 14-52 (57)
255 1dx8_A Rubredoxin; electron tr 39.0 12 0.00042 33.0 1.8 30 17-46 7-51 (70)
256 2k4x_A 30S ribosomal protein S 38.5 10 0.00034 32.0 1.1 32 93-124 15-46 (55)
257 1wg2_A Zinc finger (AN1-like) 38.2 19 0.00065 31.4 2.8 26 13-43 11-36 (64)
258 1z6t_A APAF-1, apoptotic prote 38.1 35 0.0012 39.9 6.1 40 241-281 148-190 (591)
259 2wjy_A Regulator of nonsense t 37.4 64 0.0022 40.2 8.5 71 216-296 356-426 (800)
260 2qp9_X Vacuolar protein sortin 37.2 98 0.0033 34.3 9.3 28 340-367 131-158 (355)
261 2gmg_A Hypothetical protein PF 37.1 16 0.00054 34.8 2.3 29 97-126 68-96 (105)
262 3pxi_A Negative regulator of g 36.2 1.1E+02 0.0039 37.3 10.4 44 219-262 497-542 (758)
263 2avu_E Flagellar transcription 35.7 16 0.00056 38.1 2.4 29 93-121 131-161 (192)
264 1vd4_A Transcription initiatio 35.7 11 0.00039 30.8 1.1 35 17-51 14-55 (62)
265 2apo_B Ribosome biogenesis pro 34.6 18 0.00063 31.1 2.1 25 96-126 6-30 (60)
266 2yrc_A Protein transport prote 34.6 15 0.0005 31.5 1.5 32 97-128 10-47 (59)
267 1hqc_A RUVB; extended AAA-ATPa 34.2 2.1E+02 0.007 30.3 10.9 13 353-365 91-103 (324)
268 1z5z_A Helicase of the SNF2/RA 34.2 1.9E+02 0.0063 30.9 10.6 85 463-560 27-125 (271)
269 3v2d_5 50S ribosomal protein L 33.6 19 0.00066 30.9 2.1 22 96-122 30-51 (60)
270 1tf5_A Preprotein translocase 33.6 70 0.0024 40.3 7.9 88 806-897 476-565 (844)
271 1x4w_A Hypothetical protein FL 32.7 17 0.0006 31.9 1.7 26 13-43 11-39 (67)
272 3cio_A ETK, tyrosine-protein k 32.6 74 0.0025 34.5 7.2 37 241-278 105-141 (299)
273 3irb_A Uncharacterized protein 32.1 15 0.00053 36.3 1.5 26 95-124 46-71 (145)
274 4ddu_A Reverse gyrase; topoiso 31.9 19 0.00064 46.6 2.6 26 805-830 347-376 (1104)
275 1qxf_A GR2, 30S ribosomal prot 30.2 29 0.00099 30.5 2.6 34 95-128 6-40 (66)
276 2qby_A CDC6 homolog 1, cell di 30.1 2.3E+02 0.0077 30.4 10.5 57 219-279 26-85 (386)
277 2zjr_Z 50S ribosomal protein L 29.9 36 0.0012 29.2 3.2 22 96-122 30-51 (60)
278 2avu_E Flagellar transcription 29.6 21 0.00073 37.2 2.1 25 18-42 135-161 (192)
279 3m7n_A Putative uncharacterize 29.5 18 0.00062 36.9 1.6 29 93-123 137-165 (179)
280 1e8j_A Rubredoxin; iron-sulfur 29.4 28 0.00095 29.0 2.3 27 97-123 4-45 (52)
281 3o7a_A PHD finger protein 13 v 29.4 10 0.00034 31.1 -0.3 35 674-709 17-51 (52)
282 2gnr_A Conserved hypothetical 29.2 18 0.00063 35.9 1.5 26 94-123 45-70 (145)
283 2v3b_B Rubredoxin 2, rubredoxi 29.1 27 0.00093 29.4 2.3 28 96-123 3-45 (55)
284 2k2d_A Ring finger and CHY zin 27.8 29 0.00099 31.2 2.4 30 94-123 35-64 (79)
285 1wil_A KIAA1045 protein; ring 27.8 8.7 0.0003 35.3 -1.1 46 662-708 17-74 (89)
286 1yk4_A Rubredoxin, RD; electro 27.4 34 0.0012 28.5 2.5 28 96-123 2-44 (52)
287 1qvr_A CLPB protein; coiled co 27.3 53 0.0018 40.9 5.4 30 338-367 248-278 (854)
288 2yt9_A Zinc finger-containing 27.0 11 0.00037 32.7 -0.6 29 97-125 36-76 (95)
289 3d8b_A Fidgetin-like protein 1 27.0 1.3E+02 0.0044 33.2 8.0 75 341-415 165-243 (357)
290 3lfu_A DNA helicase II; SF1 he 26.9 53 0.0018 38.9 5.2 83 216-331 9-94 (647)
291 1vk6_A NADH pyrophosphatase; 1 26.6 25 0.00087 38.0 2.1 24 20-43 110-133 (269)
292 2kn9_A Rubredoxin; metalloprot 26.6 46 0.0016 30.3 3.4 29 95-123 26-69 (81)
293 3e1s_A Exodeoxyribonuclease V, 26.6 57 0.0019 39.0 5.3 54 216-280 189-242 (574)
294 1vd4_A Transcription initiatio 26.5 18 0.0006 29.6 0.7 32 96-127 14-52 (62)
295 1x4i_A Inhibitor of growth pro 26.4 15 0.00051 32.2 0.2 35 674-710 18-55 (70)
296 3k7a_M Transcription initiatio 26.3 24 0.00081 39.5 1.9 32 14-45 18-52 (345)
297 3irb_A Uncharacterized protein 25.9 27 0.00093 34.6 2.0 24 16-43 46-69 (145)
298 3of5_A Dethiobiotin synthetase 25.5 49 0.0017 34.6 4.0 33 244-276 8-40 (228)
299 1wep_A PHF8; structural genomi 24.8 6.9 0.00023 34.8 -2.3 38 673-710 25-63 (79)
300 1vf5_D Rieske iron-sulfur prot 24.7 46 0.0016 33.8 3.5 35 17-51 105-139 (179)
301 1dx8_A Rubredoxin; electron tr 24.1 36 0.0012 30.0 2.2 28 96-123 7-49 (70)
302 4bbq_A Lysine-specific demethy 24.1 15 0.0005 34.6 -0.3 37 673-709 73-113 (117)
303 3la6_A Tyrosine-protein kinase 24.1 1.3E+02 0.0046 32.4 7.3 37 241-278 93-129 (286)
304 1wff_A Riken cDNA 2810002D23 p 23.8 43 0.0015 30.8 2.7 35 5-43 13-47 (85)
305 3p8b_A DNA-directed RNA polyme 23.5 30 0.001 31.5 1.6 21 97-123 24-44 (81)
306 1ofh_A ATP-dependent HSL prote 23.4 3.4E+02 0.012 28.2 10.1 99 353-452 117-230 (310)
307 2fsf_A Preprotein translocase 23.3 36 0.0012 42.8 2.8 99 249-364 95-206 (853)
308 3p2a_A Thioredoxin 2, putative 23.1 43 0.0015 31.6 2.8 32 94-125 3-36 (148)
309 1vk6_A NADH pyrophosphatase; 1 23.0 30 0.001 37.5 1.9 27 97-123 108-134 (269)
310 2f9y_B Acetyl-coenzyme A carbo 23.0 22 0.00074 39.5 0.7 34 13-47 20-55 (304)
311 1twf_I B12.6, DNA-directed RNA 22.9 28 0.00095 33.6 1.4 32 96-127 4-39 (122)
312 2pzi_A Probable serine/threoni 22.8 41 0.0014 40.5 3.1 31 17-47 34-68 (681)
313 1d2n_A N-ethylmaleimide-sensit 22.8 84 0.0029 32.8 5.2 62 340-401 112-175 (272)
314 2xzm_6 RPS27E; ribosome, trans 22.7 45 0.0015 30.3 2.6 35 94-128 30-65 (81)
315 2zts_A Putative uncharacterize 22.7 1.3E+02 0.0043 30.4 6.4 52 244-296 33-84 (251)
316 3h0g_I DNA-directed RNA polyme 22.7 37 0.0013 32.3 2.1 33 96-128 4-40 (113)
317 3flo_B DNA polymerase alpha ca 22.6 46 0.0016 35.0 3.1 29 14-43 19-57 (206)
318 3iz6_X 40S ribosomal protein S 22.6 52 0.0018 30.2 3.0 35 94-128 34-69 (86)
319 1sxj_B Activator 1 37 kDa subu 22.4 1.7E+02 0.0057 30.8 7.5 13 353-365 108-120 (323)
320 2c9o_A RUVB-like 1; hexameric 22.3 1.1E+02 0.0038 35.0 6.6 68 354-435 297-377 (456)
321 2vpb_A Hpygo1, pygopus homolog 22.1 4.5 0.00015 35.1 -3.9 49 660-708 8-64 (65)
322 2cvh_A DNA repair and recombin 22.1 2.4E+02 0.008 27.8 8.2 32 244-280 24-55 (220)
323 2k5r_A Uncharacterized protein 21.5 33 0.0011 32.2 1.5 27 18-44 9-62 (97)
324 1s24_A Rubredoxin 2; electron 21.4 47 0.0016 30.6 2.5 29 95-123 34-77 (87)
325 3qxc_A Dethiobiotin synthetase 21.3 66 0.0023 34.2 4.0 36 241-276 22-57 (242)
326 2aus_D NOP10, ribosome biogene 21.3 42 0.0014 29.0 1.9 25 96-126 5-29 (60)
327 3eh1_A Protein transport prote 20.9 36 0.0012 42.2 2.1 33 97-130 86-122 (751)
328 2gnr_A Conserved hypothetical 20.7 40 0.0014 33.5 2.0 26 15-44 45-70 (145)
329 4rxn_A Rubredoxin; electron tr 20.7 48 0.0016 27.9 2.2 27 97-123 4-45 (54)
330 1qvr_A CLPB protein; coiled co 20.3 1.6E+02 0.0056 36.6 7.9 57 219-276 564-622 (854)
331 1uaa_A REP helicase, protein ( 20.1 50 0.0017 39.7 3.1 66 216-293 2-70 (673)
No 1
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.69 E-value=2.1e-15 Score=174.74 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=143.6
Q ss_pred CCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC-ceEEEEEcCCchhhhHHhhhhhh
Q 038397 215 KSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR-RKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 215 g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr-~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
..|-+-|.++|.+....+. .+.|.+++|.||.||+.++.++|.+....|. ++++++.- ..|..-..+.+...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~------~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNK------LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHH------TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhh------CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 3577999999987754432 2468899999999999999888888777665 44666654 67888888888877
Q ss_pred CCCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCC
Q 038397 294 GATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGS 373 (1102)
Q Consensus 294 G~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~ 373 (1102)
... +.+.-+..-. .........|+++||.+|.... ++.. ..| .+||+||||+++|..
T Consensus 109 ~~~-~~v~~~~g~~-----~~~~~~~~~ivi~t~~~l~~~~-----~l~~------~~~-~~vIvDEaH~~kn~~----- 165 (500)
T 1z63_A 109 APH-LRFAVFHEDR-----SKIKLEDYDIILTTYAVLLRDT-----RLKE------VEW-KYIVIDEAQNIKNPQ----- 165 (500)
T ss_dssp CTT-SCEEECSSST-----TSCCGGGSSEEEEEHHHHTTCH-----HHHT------CCE-EEEEEETGGGGSCTT-----
T ss_pred CCC-ceEEEEecCc-----hhccccCCcEEEeeHHHHhccc-----hhcC------CCc-CEEEEeCccccCCHh-----
Confidence 532 2222111100 0111234579999999997532 1211 123 489999999999863
Q ss_pred CchhHHHHHHHHhhhCCCccEEEEecCCCCC-CCcc---chhhhccccCCCCCCCCHHHHHH----HHhccChhHHHHHH
Q 038397 374 QPTRTGEAVLELQARLPEARVVYCSATGASE-PRNM---GYMVRLGLWGAGTCFKDFQIFLG----ALDKGGVGALELVA 445 (1102)
Q Consensus 374 ~~s~~g~avl~LQ~~lP~ARvvY~SATgase-p~Nl---~ym~RLGLWg~gt~f~~~~~f~~----a~~~gGv~amE~va 445 (1102)
++...++.. ++..+++..|||-..+ +..| ..+.+-++ |.++.+|.+ .++.+.....+-+.
T Consensus 166 --~~~~~~l~~----l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~------~~~~~~f~~~~~~~~~~~~~~~~~~l~ 233 (500)
T 1z63_A 166 --TKIFKAVKE----LKSKYRIALTGTPIENKVDDLWSIMTFLNPGL------LGSYSEFKSKFATPIKKGDNMAKEELK 233 (500)
T ss_dssp --SHHHHHHHT----SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTT------TCCHHHHHTTTHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHh----hccCcEEEEecCCCCCCHHHHHHHHHHhCCCc------CCCHHHHHHHhccccccccHHHHHHHH
Confidence 566666654 4566889999998642 2222 22333344 445666543 34555544444444
Q ss_pred HHHHhccceeeecc-------CCCCceeEEEeccCcHHHHHHHHHHHH
Q 038397 446 MDMKARGMYVCRTL-------SYKGAEFEVIEAPLEAEMTDMYKKAAE 486 (1102)
Q Consensus 446 ~dlK~~G~yiaR~L-------Sf~gvef~i~e~~l~~~~~~~Yd~~a~ 486 (1102)
.-+ ...+++|.. .+......++.+++++++.++|+...+
T Consensus 234 ~~l--~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~ 279 (500)
T 1z63_A 234 AII--SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVE 279 (500)
T ss_dssp HHH--TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHH--hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHH
Confidence 333 234455533 344556667778999999999987543
No 2
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.53 E-value=1.1e-12 Score=146.82 Aligned_cols=220 Identities=16% Similarity=0.081 Sum_probs=133.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhC-
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVG- 294 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG- 294 (1102)
.|-+-|.+++..+.+. +.++.+.||.||+.+...+|.+.+.....+++++.-+..|..+..+.++...
T Consensus 9 ~l~~~Q~~~i~~~~~~-----------~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-----------NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-----------CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-----------CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 4668899997666532 7789999999999999888888776555679999988899999999998874
Q ss_pred CCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 295 ATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 295 ~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
.....+.-+..-.... ..........|+++||..|...-..+. +.-.+| .+|||||||+.++..
T Consensus 78 ~~~~~v~~~~g~~~~~-~~~~~~~~~~ivv~T~~~l~~~~~~~~--------~~~~~~-~~vIiDEaH~~~~~~------ 141 (494)
T 1wp9_A 78 LPPEKIVALTGEKSPE-ERSKAWARAKVIVATPQTIENDLLAGR--------ISLEDV-SLIVFDEAHRAVGNY------ 141 (494)
T ss_dssp SCGGGEEEECSCSCHH-HHHHHHHHCSEEEECHHHHHHHHHTTS--------CCTTSC-SEEEEETGGGCSTTC------
T ss_pred cchhheEEeeCCcchh-hhhhhccCCCEEEecHHHHHHHHhcCC--------cchhhc-eEEEEECCcccCCCC------
Confidence 3333332222100000 000001245799999999975422111 111233 489999999998541
Q ss_pred chhHHHHHHHHhhhCCCccEEEEecCCCCCCCccch-hhhccccCCCCCCCCHHHHHHHHhccChhHHHHHHHHHHhccc
Q 038397 375 PTRTGEAVLELQARLPEARVVYCSATGASEPRNMGY-MVRLGLWGAGTCFKDFQIFLGALDKGGVGALELVAMDMKARGM 453 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~lP~ARvvY~SATgasep~Nl~y-m~RLGLWg~gt~f~~~~~f~~a~~~gGv~amE~va~dlK~~G~ 453 (1102)
........+....+..+++..|||-..++.++.- +..|++-.... +.....+
T Consensus 142 --~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~-~~~~~~~------------------------ 194 (494)
T 1wp9_A 142 --AYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEY-RSENSPD------------------------ 194 (494)
T ss_dssp --HHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEE-CCTTSTT------------------------
T ss_pred --cHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeec-cCCCcHH------------------------
Confidence 2223334455667889999999998744333332 22222110000 0000000
Q ss_pred eeeeccCCCCceeEEEeccCcHHHHHHHHHHHHHHHHHH
Q 038397 454 YVCRTLSYKGAEFEVIEAPLEAEMTDMYKKAAEFWAELR 492 (1102)
Q Consensus 454 yiaR~LSf~gvef~i~e~~l~~~~~~~Yd~~a~~w~~~~ 492 (1102)
..-.|....+......++++...+|+...+.+....
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 195 ---VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp ---TGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 011234556667777888998888887776665443
No 3
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.2e-12 Score=155.42 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=135.6
Q ss_pred ccCCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc-CceEEEEEcCCchhhhHHhhhh
Q 038397 213 SSKSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG-RRKALWISVGSDLKFDARRDLD 291 (1102)
Q Consensus 213 ~~g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G-r~~~~w~s~s~~L~~Da~RDl~ 291 (1102)
..+.|-+-|+++|.+....+. .+.|-+++|.+|.||+.|+.++|.+.+..+ ..+.+.|=+...|..-..+.+.
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~------~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~ 306 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWS------KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFE 306 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHT------TTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhh------cCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHH
Confidence 356788999999988775543 245778999999999999988887775432 2334444455778888888887
Q ss_pred hhCCC-cccccccCCCC---------CCcC-CCCccccccceEEeehhhhhhccccccchHHHHHHHhcc-CCCceEEee
Q 038397 292 DVGAT-CIEVHALNKLP---------YSKL-DSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGS-GYDGLVIFD 359 (1102)
Q Consensus 292 diG~~-~i~v~~l~~~~---------~~~~-~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~-dfdgvivfD 359 (1102)
..... .+.++.-+.-. +... .......+..|+++||.++.... .+++. .| .+||+|
T Consensus 307 ~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-----------~~l~~~~w-~~vIvD 374 (800)
T 3mwy_W 307 KWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-----------AELGSIKW-QFMAVD 374 (800)
T ss_dssp HHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH-----------HHHHTSEE-EEEEET
T ss_pred HHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH-----------HHHhcCCc-ceeehh
Confidence 76421 22111111100 0000 00011245679999999997531 12222 23 489999
Q ss_pred cchhccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCCCCC-CCccc---hhhhccccCCCCCCCCHHHHHHHHhc
Q 038397 360 ECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGASE-PRNMG---YMVRLGLWGAGTCFKDFQIFLGALDK 435 (1102)
Q Consensus 360 EcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATgase-p~Nl~---ym~RLGLWg~gt~f~~~~~f~~a~~~ 435 (1102)
|||+.||.. |++.+++.. ++..+.+..|||...+ +..|. -+.+-|.|+ ....|- ++.
T Consensus 375 EaH~lkn~~-------s~~~~~l~~----l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~------~~~~~~--~~~ 435 (800)
T 3mwy_W 375 EAHRLKNAE-------SSLYESLNS----FKVANRMLITGTPLQNNIKELAALVNFLMPGRFT------IDQEID--FEN 435 (800)
T ss_dssp TGGGGCCSS-------SHHHHHHTT----SEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-----------------C
T ss_pred hhhhhcCch-------hHHHHHHHH----hhhccEEEeeCCcCCCCHHHHHHHHHHhCccccC------chhhhc--ccc
Confidence 999999863 666666654 4455678899997642 22221 122223332 222221 122
Q ss_pred cChhHHHHHHHHHHhcccee-eecc-----CCCCceeEEEeccCcHHHHHHHHHHH
Q 038397 436 GGVGALELVAMDMKARGMYV-CRTL-----SYKGAEFEVIEAPLEAEMTDMYKKAA 485 (1102)
Q Consensus 436 gGv~amE~va~dlK~~G~yi-aR~L-----Sf~gvef~i~e~~l~~~~~~~Yd~~a 485 (1102)
......+.+..-.+..+-|+ +|.- ++-.....++.+.|++.+.++|+...
T Consensus 436 ~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~ 491 (800)
T 3mwy_W 436 QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNIL 491 (800)
T ss_dssp CTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 22222233333333344444 4433 35666778888999999999998764
No 4
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.48 E-value=2.1e-11 Score=147.38 Aligned_cols=238 Identities=20% Similarity=0.188 Sum_probs=141.0
Q ss_pred CCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc------CceEEEEEcCCchhhhHHh
Q 038397 215 KSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG------RRKALWISVGSDLKFDARR 288 (1102)
Q Consensus 215 g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G------r~~~~w~s~s~~L~~Da~R 288 (1102)
+.|=+-|.|+|.+.......... ....|.+++|.+|.||+.|+.++|+....++ .+++++|.-. .|..-..+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~-~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRI-ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSS-TTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccc-cCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 45668999999876544321100 1246889999999999999999999887665 2457777654 67777777
Q ss_pred hhhhhCCCcccccccCCCCCCc--------CCCCccccccceEEeehhhhhhccccccchHHHHHHHhc-cCCCceEEee
Q 038397 289 DLDDVGATCIEVHALNKLPYSK--------LDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCG-SGYDGLVIFD 359 (1102)
Q Consensus 289 Dl~diG~~~i~v~~l~~~~~~~--------~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g-~dfdgvivfD 359 (1102)
.+.......+.++.+..-.... +..........|+++||.+|.... +++. .+| ++||+|
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-----------~~l~~~~~-~~vI~D 199 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA-----------EVLHKGKV-GLVICD 199 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-----------TTTTTSCC-CEEEET
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH-----------HHhhcCCc-cEEEEE
Confidence 7665422222222221100000 000111234579999999997532 1222 234 489999
Q ss_pred cchhccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCCCCC----CCccchhhhccccCCCCCCCCHHHHHHHHh-
Q 038397 360 ECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGASE----PRNMGYMVRLGLWGAGTCFKDFQIFLGALD- 434 (1102)
Q Consensus 360 EcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATgase----p~Nl~ym~RLGLWg~gt~f~~~~~f~~a~~- 434 (1102)
|||+.||.. +++.+++..| +..+.+-.|||-..+ --+|..+.+-|++| +..+|...+.
T Consensus 200 EaH~ikn~~-------~~~~~al~~l----~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~------~~~~F~~~f~~ 262 (644)
T 1z3i_X 200 EGHRLKNSD-------NQTYLALNSM----NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILG------TAQEFKKRFEI 262 (644)
T ss_dssp TGGGCCTTC-------HHHHHHHHHH----CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHC------CHHHHHHHTHH
T ss_pred CceecCChh-------hHHHHHHHhc----ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCC------CHHHHHHhhcc
Confidence 999999874 7788887755 456889999998643 22333344556665 4555554332
Q ss_pred ---ccC------------hhHHHHHHHHHHhccceeeeccC-----CCCceeEEEeccCcHHHHHHHHHHH
Q 038397 435 ---KGG------------VGALELVAMDMKARGMYVCRTLS-----YKGAEFEVIEAPLEAEMTDMYKKAA 485 (1102)
Q Consensus 435 ---~gG------------v~amE~va~dlK~~G~yiaR~LS-----f~gvef~i~e~~l~~~~~~~Yd~~a 485 (1102)
++. ...++-+..-+ ....++|.-+ +-.-...++.+.|+++++++|+...
T Consensus 263 pi~~~~~~~~~~~~~~~~~~~~~~L~~~l--~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~ 331 (644)
T 1z3i_X 263 PILKGRDADASDKDRAAGEQKLQELISIV--NRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFL 331 (644)
T ss_dssp HHHHHHSTTCCSHHHHHHHHHHHHHHHHH--HHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHH
T ss_pred hhhhcCCcCCCHHHHHHHHHHHHHHHHHH--HHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 211 11112122222 2344555432 3333456667899999999998764
No 5
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.34 E-value=7.7e-11 Score=148.67 Aligned_cols=191 Identities=20% Similarity=0.211 Sum_probs=117.4
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCc-eEEEEEcCCchhhhHHhhhhhhC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRR-KALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~-~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
.|-+-|+++|..+.+++ ..|++++|.||.||+.+...+|.+.+.+|+. +++++.-. .|.....+.+...-
T Consensus 153 ~LrpyQ~eav~~~l~~~--------~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRH--------APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSS--------SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhc--------CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 35688999988888754 4678999999999999999999999999983 45555555 99988888884432
Q ss_pred CCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 295 ATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 295 ~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
...+.++.-+............-....|+++||.+|.... .++.++. ..+| ++||+||||+.+|.. .+
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~----~~~~~l~---~~~~-dlVIvDEAH~~kn~~----~~ 291 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSK----QRLEHLC---EAEW-DLLVVDEAHHLVWSE----DA 291 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTST----TTTHHHH---TSCC-CEEEECCSSCCCCBT----TB
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCH----HHHHHhh---hcCC-CEEEehhhHhhcCCC----Cc
Confidence 2222222111100000000011124579999999997431 2223222 2244 489999999999863 23
Q ss_pred chhHHHHHHHHhhhCCCccEEEEecCCCC-CCCccchhhhccccCCCCCCCCHHHHHHH
Q 038397 375 PTRTGEAVLELQARLPEARVVYCSATGAS-EPRNMGYMVRLGLWGAGTCFKDFQIFLGA 432 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~lP~ARvvY~SATgas-ep~Nl~ym~RLGLWg~gt~f~~~~~f~~a 432 (1102)
.++...++..|... ..+++..|||-.. .+..+. ..+.+-.++ .|.+...|...
T Consensus 292 ~s~~~~~l~~L~~~--~~~~L~LTATPi~n~~~el~--sll~~L~p~-~~~~~~~f~~~ 345 (968)
T 3dmq_A 292 PSREYQAIEQLAEH--VPGVLLLTATPEQLGMESHF--ARLRLLDPN-RFHDFAQFVEE 345 (968)
T ss_dssp CCHHHHHHHHHHTT--CSSEEESCSSCSSSCSSCTH--HHHHHHCTT-TCSSTHHHHHH
T ss_pred chHHHHHHHHHhhc--CCcEEEEEcCCccCCHHHHH--HHHHhcCcc-ccCCHHHHHHH
Confidence 34556666666543 3469999999864 333332 333333332 35666666654
No 6
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.14 E-value=1.1e-09 Score=127.16 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=102.4
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|.+-|.++|..+.+ + ...++.+.||.||+-+...+++..+..|+.+++++.-...|..+..+.+...+.
T Consensus 113 ~l~~~Q~~ai~~~~~-~---------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV-N---------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp CCCHHHHHHHHHHHH-H---------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHh-c---------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 688999999776554 2 234677779999999998888888888887899999999999999999988865
Q ss_pred C-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 296 T-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 296 ~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
. .+.+.-+...... .........|+++||.+|..... . ++ .+| ++||+||||...+
T Consensus 183 ~~~~~v~~~~~~~~~---~~~~~~~~~I~i~T~~~l~~~~~---~-------~~-~~~-~liIiDE~H~~~~-------- 239 (510)
T 2oca_A 183 FSHAMIKKIGGGASK---DDKYKNDAPVVVGTWQTVVKQPK---E-------WF-SQF-GMMMNDECHLATG-------- 239 (510)
T ss_dssp SCGGGEEECGGGCCT---TGGGCTTCSEEEEEHHHHTTSCG---G-------GG-GGE-EEEEEETGGGCCH--------
T ss_pred CCccceEEEecCCcc---ccccccCCcEEEEeHHHHhhchh---h-------hh-hcC-CEEEEECCcCCCc--------
Confidence 3 2344333221100 00011345699999999875311 1 11 122 7999999999875
Q ss_pred chhHHHHHHHHhhhC-CCccEEEEecCCC
Q 038397 375 PTRTGEAVLELQARL-PEARVVYCSATGA 402 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~l-P~ARvvY~SATga 402 (1102)
+ ....+-..+ +..+++..|||-.
T Consensus 240 --~---~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 240 --K---SISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp --H---HHHHHGGGCTTCCEEEEEESCGG
T ss_pred --c---cHHHHHHhcccCcEEEEEEeCCC
Confidence 1 123344555 4558888999983
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.01 E-value=3e-08 Score=114.92 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=96.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc----CceEEEEEcCCchhhhHHhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG----RRKALWISVGSDLKFDARRDLD 291 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G----r~~~~w~s~s~~L~~Da~RDl~ 291 (1102)
.|.+-|.++|..+.+. ...++.+.||.||+-+..-.|++.+.++ ..+++++.-...|..+..+.|+
T Consensus 7 ~~~~~Q~~~i~~~~~~----------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 7 KARSYQIELAQPAING----------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp -CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC----------CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4668899997666432 2367889999999988877788888774 4569999888899999999998
Q ss_pred hhCCC-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 292 DVGAT-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 292 diG~~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
.+... .+.+..+..-...........-+..||++||..|...-..+.- .|+ .++ .+||+||||++.+..
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~------~~~-~~~-~~vViDEah~~~~~~-- 146 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL------TSL-SIF-TLMIFDECHNTTGNH-- 146 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSC------CCS-TTC-SEEEEETGGGCSTTS--
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcc------ccc-ccC-CEEEEECCcccCCcc--
Confidence 87431 2333222211000000000112346999999998753211110 011 112 489999999997542
Q ss_pred CCCCchhHHHHHHHHhh----hCCCccEEEEecCCC
Q 038397 371 AGSQPTRTGEAVLELQA----RLPEARVVYCSATGA 402 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~----~lP~ARvvY~SATga 402 (1102)
........-+.. ..|+.+++..|||-.
T Consensus 147 -----~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 147 -----PYNVLMTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp -----HHHHHHHHHHHHHHCC---CCEEEEEESCCC
T ss_pred -----hHHHHHHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 111111111112 246789999999964
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.01 E-value=3.1e-09 Score=122.26 Aligned_cols=139 Identities=19% Similarity=0.089 Sum_probs=95.2
Q ss_pred CCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhC
Q 038397 215 KSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 215 g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
..|.+-|.++|....+ + ..+++.+-||.||+-+...+|... | ++++++.-...|.....+.+..+|
T Consensus 92 ~~l~~~Q~~ai~~i~~-~---------~~~ll~~~TGsGKT~~~l~~i~~~---~-~~~Lvl~P~~~L~~Q~~~~~~~~~ 157 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV-D---------KRGCIVLPTGSGKTHVAMAAINEL---S-TPTLIVVPTLALAEQWKERLGIFG 157 (472)
T ss_dssp CCBCHHHHHHHHHHTT-T---------TEEEEECCTTSCHHHHHHHHHHHH---C-SCEEEEESSHHHHHHHHHHGGGGC
T ss_pred CCcCHHHHHHHHHHHh-c---------CCEEEEeCCCCCHHHHHHHHHHHc---C-CCEEEEECCHHHHHHHHHHHHhCC
Confidence 3577999999764433 2 126777789999999877777764 4 469999888899999999998875
Q ss_pred CCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 295 ATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 295 ~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
...+. -+. | + ......|+++||..|... + +.+..+| ++||+||||++.+..
T Consensus 158 ~~~v~--~~~----g----~-~~~~~~Ivv~T~~~l~~~-------~----~~~~~~~-~liIvDEaH~~~~~~------ 208 (472)
T 2fwr_A 158 EEYVG--EFS----G----R-IKELKPLTVSTYDSAYVN-------A----EKLGNRF-MLLIFDEVHHLPAES------ 208 (472)
T ss_dssp GGGEE--EBS----S----S-CBCCCSEEEEEHHHHHHT-------H----HHHTTTC-SEEEEETGGGTTSTT------
T ss_pred CcceE--EEC----C----C-cCCcCCEEEEEcHHHHHH-------H----HHhcCCC-CEEEEECCcCCCChH------
Confidence 33121 121 1 1 112357999999988642 1 2233334 699999999987542
Q ss_pred chhHHHHHHHHhhhCCCccEEEEecCCCC
Q 038397 375 PTRTGEAVLELQARLPEARVVYCSATGAS 403 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~lP~ARvvY~SATgas 403 (1102)
. .. +.+.++..+++..|||-..
T Consensus 209 -~---~~---~~~~~~~~~~l~lSATp~~ 230 (472)
T 2fwr_A 209 -Y---VQ---IAQMSIAPFRLGLTATFER 230 (472)
T ss_dssp -T---HH---HHHTCCCSEEEEEESCCCC
T ss_pred -H---HH---HHHhcCCCeEEEEecCccC
Confidence 1 11 3456788899999999763
No 9
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.99 E-value=5.7e-08 Score=112.21 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=98.7
Q ss_pred cccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc----CceEEEEEcCCchhhhHHhhhhh
Q 038397 217 LSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG----RRKALWISVGSDLKFDARRDLDD 292 (1102)
Q Consensus 217 LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G----r~~~~w~s~s~~L~~Da~RDl~d 292 (1102)
|.+-|.++|..+.+ + ...++.+.||.||+-+..-.|++.+.++ ..+++++.-...|..+..+.|+.
T Consensus 5 ~~~~Q~~~i~~~~~-~---------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 5 PRNYQLELALPAKK-G---------KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCHHHHHHHHHHHT-T---------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC-C---------CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 56789999765542 2 3468889999999988877888888774 45699999998999999999988
Q ss_pred hCCC-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCC
Q 038397 293 VGAT-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEA 371 (1102)
Q Consensus 293 iG~~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~ 371 (1102)
+... .+.+..+..-...........-+..|+++||-.|...-..+.- .|+. ++ .+|||||||++.+..
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~------~~~~-~~-~~vViDEah~~~~~~--- 143 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI------PSLS-VF-TLMIFDECHNTSKNH--- 143 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS------CCGG-GC-SEEEETTGGGCSTTC---
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc------cccc-cC-CEEEEECccccCCcc---
Confidence 7421 2333222111000000000112356999999998753221110 0111 12 589999999997642
Q ss_pred CCCchhHHHHHHHHhhhC-----CCccEEEEecCCCC
Q 038397 372 GSQPTRTGEAVLELQARL-----PEARVVYCSATGAS 403 (1102)
Q Consensus 372 ~~~~s~~g~avl~LQ~~l-----P~ARvvY~SATgas 403 (1102)
+........+...+ |+.+++..|||-..
T Consensus 144 ----~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 144 ----PYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp ----HHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred ----hHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 22222112222222 66799999999643
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.98 E-value=3.7e-08 Score=121.59 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=99.3
Q ss_pred ccccccccCCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc----CceEEEEEcCCch
Q 038397 207 IKYDLESSKSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG----RRKALWISVGSDL 282 (1102)
Q Consensus 207 lp~~~~~~g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G----r~~~~w~s~s~~L 282 (1102)
.|..+.....|.+-|.++|..+.+ + ...++.+.||.||+-+..-.|++.+.++ ..++|++.-...|
T Consensus 239 ~~~~~~g~~~l~~~Q~~~i~~~l~-~---------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L 308 (797)
T 4a2q_A 239 KPPPVYETKKARSYQIELAQPAIN-G---------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308 (797)
T ss_dssp ---------CCCHHHHHHHHHHHT-T---------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH
T ss_pred CchhhcCCCCCCHHHHHHHHHHHh-C---------CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHH
Confidence 344333344678999999765532 2 3468889999999998888888888774 4569999988999
Q ss_pred hhhHHhhhhhhCCC-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecc
Q 038397 283 KFDARRDLDDVGAT-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDEC 361 (1102)
Q Consensus 283 ~~Da~RDl~diG~~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEc 361 (1102)
..+..+.|+.+... .+.|..+..-...........-+..||++||..|...-..+.- .|+. ++ .+||+|||
T Consensus 309 ~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~------~~~~-~~-~~iViDEa 380 (797)
T 4a2q_A 309 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL------TSLS-IF-TLMIFDEC 380 (797)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSC------CCGG-GC-SEEEETTG
T ss_pred HHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccc------cccc-cC-CEEEEECc
Confidence 99999888887431 2333222211000000000112346999999998753211110 0111 12 59999999
Q ss_pred hhccccCCCCCCCchhHHHHHHHHh-----hhCCCccEEEEecCCC
Q 038397 362 HKAKNLVPEAGSQPTRTGEAVLELQ-----ARLPEARVVYCSATGA 402 (1102)
Q Consensus 362 H~akn~~~~~~~~~s~~g~avl~LQ-----~~lP~ARvvY~SATga 402 (1102)
|++.+.. + ....+..+- ...|..+++..|||-.
T Consensus 381 H~~~~~~-------~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 381 HNTTGNH-------P-YNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp GGCSTTS-------H-HHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred cccCCCc-------c-HHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 9988631 1 111111221 2256789999999964
No 11
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.97 E-value=3.3e-08 Score=117.37 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=86.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc--------CceEEEEEcCCchhhhHH
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG--------RRKALWISVGSDLKFDAR 287 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G--------r~~~~w~s~s~~L~~Da~ 287 (1102)
.|.+-|.++|..+.+... .|. ..+++.+.||.||+.++..+|..-+..| .++++++.-...|.....
T Consensus 178 ~lr~~Q~~ai~~~~~~~~----~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVL----QGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp -CCHHHHHHHHHHHHHHH----TTC-SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred CchHHHHHHHHHHHHHHh----cCC-CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 577999999887766542 232 3456667799999999877777776654 477999999999998888
Q ss_pred -hhhhhhCCCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccc
Q 038397 288 -RDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 288 -RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
+.++..|..... +. +....-...|+++||..|...... .. +...+..+.-++||+||||++.+
T Consensus 253 ~~~~~~~~~~~~~---~~--------~~~~~~~~~I~v~T~~~l~~~~~~-~~----~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 253 DKTFTPFGDARHK---IE--------GGKVVKSREIYFAIYQSIASDERR-PG----LYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp --CCTTTCSSEEE---CC--------C--CCSSCSEEEEEGGGC-------CC----GGGGSCTTSCSEEEESCCC----
T ss_pred HHHHHhcchhhhh---hh--------ccCCCCCCcEEEEEhhhhcccccc-cc----ccccCCCCccCEEEEECCccccc
Confidence 677666542111 11 111223457999999999753210 01 11122223345899999999875
Q ss_pred cCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCCC
Q 038397 367 LVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGA 402 (1102)
Q Consensus 367 ~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATga 402 (1102)
.. +.....+.+.+++++++..|||-.
T Consensus 317 ~~----------~~~~~~il~~~~~~~~l~lTATP~ 342 (590)
T 3h1t_A 317 RD----------NSNWREILEYFEPAFQIGMTATPL 342 (590)
T ss_dssp ---------------CHHHHHHSTTSEEEEEESSCS
T ss_pred cc----------hHHHHHHHHhCCcceEEEeccccc
Confidence 32 112233446788999999999965
No 12
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.96 E-value=3.5e-08 Score=109.25 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=97.8
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.|.+-|.+++....+. ..+++...||.||+......+++.+.. +..+++|+.-+..|..+..+.++.+
T Consensus 30 ~~~~~Q~~~i~~~~~~----------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 30 HPSEVQHECIPQAILG----------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp SCCHHHHHHHHHHTTT----------CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC----------CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 3778999997654431 347788889999997766667776554 3457999999999999998888887
Q ss_pred CCC--cccccccCCCCCCcCCCCc--ccc---ccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccc
Q 038397 294 GAT--CIEVHALNKLPYSKLDSRS--VGI---REGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 294 G~~--~i~v~~l~~~~~~~~~~~~--~~~---~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
... .+.+.-+. |....+. ..+ ...|+++||..|...-..+.-. + .+ =.+||+||||.+.+
T Consensus 100 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-------~-~~-~~~vViDEaH~~~~ 166 (391)
T 1xti_A 100 SKYMPNVKVAVFF----GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN-------L-KH-IKHFILDECDKMLE 166 (391)
T ss_dssp TTTCTTCCEEEEC----TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC-------C-TT-CSEEEECSHHHHTS
T ss_pred HhhCCCeEEEEEe----CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc-------c-cc-cCEEEEeCHHHHhh
Confidence 543 23332221 1000000 001 2369999999886432111100 0 12 25899999999864
Q ss_pred cCCCCCCCchhHHHHHHHHhhhCC-CccEEEEecCC
Q 038397 367 LVPEAGSQPTRTGEAVLELQARLP-EARVVYCSATG 401 (1102)
Q Consensus 367 ~~~~~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATg 401 (1102)
. ......+..+-..+| +.+++++|||-
T Consensus 167 ~--------~~~~~~~~~~~~~~~~~~~~i~~SAT~ 194 (391)
T 1xti_A 167 Q--------LDMRRDVQEIFRMTPHEKQVMMFSATL 194 (391)
T ss_dssp S--------HHHHHHHHHHHHTSCSSSEEEEEESSC
T ss_pred c--------cchHHHHHHHHhhCCCCceEEEEEeeC
Confidence 3 223344555555554 77899999993
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.94 E-value=1e-07 Score=105.05 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=102.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+++-|.+++....+. ....+++-..||.||+-+..-.|++.+.. ...+++++.-+..|..+..+.++.+
T Consensus 27 ~~~~~Q~~~i~~~~~~--------~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--------PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp SCCHHHHHHHHHHHCS--------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC--------CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 5778899997655432 23457788889999998877777777654 3456999999999999999999998
Q ss_pred CCC-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCC
Q 038397 294 GAT-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAG 372 (1102)
Q Consensus 294 G~~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 372 (1102)
+.. .+.+..+..-. ..........|+++||..|...-..+...+ .++ .+|||||||.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~----~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~--------~~~-~~iIiDEah~~~~~~---- 161 (395)
T 3pey_A 99 GKFTKITSQLIVPDS----FEKNKQINAQVIVGTPGTVLDLMRRKLMQL--------QKI-KIFVLDEADNMLDQQ---- 161 (395)
T ss_dssp TTTSCCCEEEESTTS----SCTTSCBCCSEEEECHHHHHHHHHTTCBCC--------TTC-CEEEEETHHHHHHST----
T ss_pred hcccCeeEEEEecCc----hhhhccCCCCEEEEcHHHHHHHHHcCCccc--------ccC-CEEEEEChhhhcCcc----
Confidence 742 33322221110 001112345699999999864321111001 122 589999999987531
Q ss_pred CCchhHHHHHHHHhhhCC-CccEEEEecCC
Q 038397 373 SQPTRTGEAVLELQARLP-EARVVYCSATG 401 (1102)
Q Consensus 373 ~~~s~~g~avl~LQ~~lP-~ARvvY~SATg 401 (1102)
........+.+.+| +.+++++|||-
T Consensus 162 ----~~~~~~~~~~~~~~~~~~~i~~SAT~ 187 (395)
T 3pey_A 162 ----GLGDQCIRVKRFLPKDTQLVLFSATF 187 (395)
T ss_dssp ----THHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred ----ccHHHHHHHHHhCCCCcEEEEEEecC
Confidence 23445555556664 57999999994
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.91 E-value=1.4e-07 Score=113.60 Aligned_cols=169 Identities=18% Similarity=0.133 Sum_probs=102.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC-----ceEEEEEcCCchhhhH-Hhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR-----RKALWISVGSDLKFDA-RRD 289 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr-----~~~~w~s~s~~L~~Da-~RD 289 (1102)
.|.+-|.++|..+.+ +..+++.+-||.||+.+..-+|++...+++ .++|.++-...|..+. .+-
T Consensus 7 ~l~~~Q~~~i~~il~----------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~ 76 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE 76 (699)
T ss_dssp CCCHHHHHHHHHHHS----------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHh----------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHH
Confidence 366889999776654 134788899999999988888888877764 5799999999999999 899
Q ss_pred hhhhCCCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccc-hHHHHHHHhccCCCceEEeecchhccccC
Q 038397 290 LDDVGATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRS-RLQQLVQWCGSGYDGLVIFDECHKAKNLV 368 (1102)
Q Consensus 290 l~diG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~s-Rl~Ql~~W~g~dfdgvivfDEcH~akn~~ 368 (1102)
++..+...+.+..+..-......-....-...||++||..|...-..... +... + ++ .++ .+||+||||++.+-.
T Consensus 77 l~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~-~-~~-~~~-~lvViDEaH~~~~~~ 152 (699)
T 4gl2_A 77 FQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAG-V-QL-SDF-SLIIIDECHHTNKEA 152 (699)
T ss_dssp HHHHHTTTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------C-C-CG-GGC-SEEEEESGGGCBTTB
T ss_pred HHHHcCcCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccc-e-ec-ccC-cEEEEECccccCccc
Confidence 99888754554444321100000000112456999999999854211000 0000 0 11 123 589999999884321
Q ss_pred CCCCCCchhHHHHHH--HHhhhC---------CCccEEEEecCCCC
Q 038397 369 PEAGSQPTRTGEAVL--ELQARL---------PEARVVYCSATGAS 403 (1102)
Q Consensus 369 ~~~~~~~s~~g~avl--~LQ~~l---------P~ARvvY~SATgas 403 (1102)
. -.......+ .+...- |..++|..|||-..
T Consensus 153 ---~--~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 153 ---V--YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp ---S--SCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred ---h--HHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 0 011111111 111221 77899999999765
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.89 E-value=9.6e-08 Score=104.20 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=100.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc-cCceEEEEEcCCchhhhHHhhhhhhC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH-GRRKALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~-Gr~~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
.+++.|.+++..+.+. +..+++...||.||+.+..-.+++...+ ...+++|+.-+..|..+..+.++.+.
T Consensus 28 ~~~~~Q~~~i~~~~~~---------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLND---------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp SCCHHHHHHHHHHHHT---------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC---------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 5789999998776543 2456777889999999877777776654 34569999999999999999999875
Q ss_pred CC-cccccccCCCCCCcCCCC-ccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCC
Q 038397 295 AT-CIEVHALNKLPYSKLDSR-SVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAG 372 (1102)
Q Consensus 295 ~~-~i~v~~l~~~~~~~~~~~-~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 372 (1102)
.. .+.+..+..-.. .... .......|+++||..|...-..+...+ .++ .+||+||||.+.+..
T Consensus 99 ~~~~~~v~~~~~~~~--~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~--------~~~-~~iIiDEah~~~~~~---- 163 (367)
T 1hv8_A 99 GNKNLKIAKIYGGKA--IYPQIKALKNANIVVGTPGRILDHINRGTLNL--------KNV-KYFILDEADEMLNMG---- 163 (367)
T ss_dssp CSSCCCEEEECTTSC--HHHHHHHHHTCSEEEECHHHHHHHHHTTCSCT--------TSC-CEEEEETHHHHHTTT----
T ss_pred CCCCceEEEEECCcc--hHHHHhhcCCCCEEEecHHHHHHHHHcCCccc--------ccC-CEEEEeCchHhhhhc----
Confidence 43 344333221100 0000 001245799999999864321111101 122 589999999986531
Q ss_pred CCchhHHHHHHHHhhhC-CCccEEEEecCC
Q 038397 373 SQPTRTGEAVLELQARL-PEARVVYCSATG 401 (1102)
Q Consensus 373 ~~~s~~g~avl~LQ~~l-P~ARvvY~SATg 401 (1102)
....+..+...+ ++.+++++|||-
T Consensus 164 -----~~~~~~~~~~~~~~~~~~i~~SAT~ 188 (367)
T 1hv8_A 164 -----FIKDVEKILNACNKDKRILLFSATM 188 (367)
T ss_dssp -----THHHHHHHHHTSCSSCEEEEECSSC
T ss_pred -----hHHHHHHHHHhCCCCceEEEEeecc
Confidence 223344444444 678999999994
No 16
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.87 E-value=1.3e-07 Score=119.14 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=99.1
Q ss_pred cCCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc----CceEEEEEcCCchhhhHHhh
Q 038397 214 SKSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG----RRKALWISVGSDLKFDARRD 289 (1102)
Q Consensus 214 ~g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G----r~~~~w~s~s~~L~~Da~RD 289 (1102)
.-.|.+-|.++|..+.+ + ...++.+.||.||+-+..-.|++.+.++ ..++++++-...|..+..+.
T Consensus 246 ~~~~r~~Q~~ai~~il~-g---------~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-G---------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp --CCCHHHHHHHHHHHT-T---------CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-C---------CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHH
Confidence 34678999999776643 1 3467888899999988777787777764 45699999889999999988
Q ss_pred hhhhCC-CcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccC
Q 038397 290 LDDVGA-TCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLV 368 (1102)
Q Consensus 290 l~diG~-~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~ 368 (1102)
|+.... ..+.|..+..-...........-...||++||..|...-..+.- .|+ .+| .+||+||||++++..
T Consensus 316 ~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~------~~l-~~~-~liViDEaH~~~~~~ 387 (936)
T 4a2w_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL------TSL-SIF-TLMIFDECHNTTGNH 387 (936)
T ss_dssp HHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSC------CCG-GGC-SEEEEETGGGCSTTC
T ss_pred HHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCcc------ccc-cCC-CEEEEECccccCCCc
Confidence 887632 12333322211000000000112346999999998753211110 011 112 589999999988642
Q ss_pred CCCCCCchhHHHHHHHHhhh-----CCCccEEEEecCCC
Q 038397 369 PEAGSQPTRTGEAVLELQAR-----LPEARVVYCSATGA 402 (1102)
Q Consensus 369 ~~~~~~~s~~g~avl~LQ~~-----lP~ARvvY~SATga 402 (1102)
+ ....+..+... .|..+++..|||-.
T Consensus 388 -------~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 388 -------P-YNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp -------H-HHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred -------c-HHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 1 22222222222 56789999999964
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.84 E-value=1.2e-07 Score=105.72 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=97.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.|...|.+++....+. ..+++...||.||+....-.+++.+.. ...+++|+.-+..|..+..+.++.+
T Consensus 43 ~~~~~Q~~~i~~i~~~----------~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITG----------RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp SCCHHHHHHHHHHHHT----------CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC----------CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 4789999997665542 236777889999997766667766654 3457999999999999999999888
Q ss_pred CCC-cccccccCC-CCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCC
Q 038397 294 GAT-CIEVHALNK-LPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEA 371 (1102)
Q Consensus 294 G~~-~i~v~~l~~-~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~ 371 (1102)
+.. .+.+.-+.. ..... .-....-...|+++||..|...-..+ |..-..=.+|||||||.+.+.
T Consensus 113 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~T~~~l~~~~~~~---------~~~~~~~~~vIiDEaH~~~~~---- 178 (400)
T 1s2m_A 113 GKHCGISCMVTTGGTNLRD-DILRLNETVHILVGTPGRVLDLASRK---------VADLSDCSLFIMDEADKMLSR---- 178 (400)
T ss_dssp TTTTTCCEEEECSSSCHHH-HHHHTTSCCSEEEECHHHHHHHHHTT---------CSCCTTCCEEEEESHHHHSSH----
T ss_pred hcccCceEEEEeCCcchHH-HHHHhcCCCCEEEEchHHHHHHHHhC---------CcccccCCEEEEeCchHhhhh----
Confidence 643 333222110 00000 00001123469999999885431111 111111259999999987532
Q ss_pred CCCchhHHHHHHHHhhhCC-CccEEEEecC
Q 038397 372 GSQPTRTGEAVLELQARLP-EARVVYCSAT 400 (1102)
Q Consensus 372 ~~~~s~~g~avl~LQ~~lP-~ARvvY~SAT 400 (1102)
..+..+..+...+| +.++++.|||
T Consensus 179 -----~~~~~~~~i~~~~~~~~~~i~lSAT 203 (400)
T 1s2m_A 179 -----DFKTIIEQILSFLPPTHQSLLFSAT 203 (400)
T ss_dssp -----HHHHHHHHHHTTSCSSCEEEEEESC
T ss_pred -----chHHHHHHHHHhCCcCceEEEEEec
Confidence 23445555666665 5689999999
No 18
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.57 E-value=4.1e-07 Score=98.13 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=106.5
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|.+-|.++|..+.+.+ .+ ++.+.||.||+.+.+.++.....+|+.+++++.-...|.....+.++..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~---------~~-ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR---------RR-ILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHS---------EE-EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcC---------Ce-EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 57788999977666532 23 568889999999998888888888887899999888999999999999875
Q ss_pred C-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 296 T-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 296 ~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
. .+.+..+..-... .........|+++||.+|..... .|+. +| ++||+||||.+.+-
T Consensus 183 ~~~~~~~~~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~----------~~~~-~~-~~vIiDEaH~~~~~------- 240 (282)
T 1rif_A 183 FSHAMIKKIGGGASK---DDKYKNDAPVVVGTWQTVVKQPK----------EWFS-QF-GMMMNDECHLATGK------- 240 (282)
T ss_dssp CCGGGEEECSTTCSS---TTCCCTTCSEEEECHHHHTTSCG----------GGGG-GE-EEEEEETGGGCCHH-------
T ss_pred cccceEEEEeCCCcc---hhhhccCCcEEEEchHHHHhhHH----------HHHh-hC-CEEEEECCccCCcc-------
Confidence 3 2333333211100 00111345699999998864311 1221 23 69999999998731
Q ss_pred chhHHHHHHHHhhhC-CCccEEEEecCCCCCCCccc
Q 038397 375 PTRTGEAVLELQARL-PEARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~l-P~ARvvY~SATgasep~Nl~ 409 (1102)
....+-..+ +..+++..|||-...-.++.
T Consensus 241 ------~~~~il~~~~~~~~~l~lSATp~~~~~~~~ 270 (282)
T 1rif_A 241 ------SISSIISGLNNCMFKFGLSGSLRDGKANIM 270 (282)
T ss_dssp ------HHHHHTTTCTTCCEEEEECSSCCTTSTTHH
T ss_pred ------cHHHHHHHhhcCCeEEEEeCCCCCcchHHH
Confidence 223333555 57889999999865554443
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.38 E-value=3.4e-05 Score=87.00 Aligned_cols=77 Identities=21% Similarity=0.098 Sum_probs=60.6
Q ss_pred HhhhcCCcceEEEE----eccccccccccc-ccccccccceeEEEecCC--CcHhHHHHhhcccccCCCC---CCCeEEE
Q 038397 805 KQLFMDGKKLVAII----SEAGSAGVSLQA-DRRAANQKRRVHITLELP--WSADRAIQQFGRTHRSNQA---SAPEYRI 874 (1102)
Q Consensus 805 k~~Fm~G~K~VAII----SeAaSTGISLhA-Drr~~NQRRRvHitLElp--WsADkAIQqfGRTHRSNQv---saP~Y~~ 874 (1102)
-+.|.+|+..|+|- +++++.||.+.. =. +=|...+| ||.+.-+|+.||++|.++- .+=.|.+
T Consensus 290 ~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~--------~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~ 361 (414)
T 3oiy_A 290 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK--------YVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIF 361 (414)
T ss_dssp HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCC--------EEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEE
T ss_pred HHHHhCCCCeEEEEecCcCchhhccCccccccC--------EEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEE
Confidence 47999999999999 999999999875 22 23668899 9999999999999999873 3333333
Q ss_pred eecCccchhhhHHHHHHHHh
Q 038397 875 IFTNLGGERRFASIVAKRLE 894 (1102)
Q Consensus 875 l~T~l~GErRFaS~VAkRLe 894 (1102)
+ .|.++...+.+.|.
T Consensus 362 ~-----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 362 E-----EDEEIFESLKTRLL 376 (414)
T ss_dssp C-----CCHHHHHHHHHHHH
T ss_pred E-----ccHHHHHHHHHHhc
Confidence 3 57777777777766
No 20
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.31 E-value=6.8e-07 Score=90.90 Aligned_cols=137 Identities=19% Similarity=0.120 Sum_probs=78.5
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc-----CceEEEEEcCCchhhh-HHhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG-----RRKALWISVGSDLKFD-ARRD 289 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G-----r~~~~w~s~s~~L~~D-a~RD 289 (1102)
.|.+-|.+++..+.+. ..+++...||.||+.....++++.+.++ ..+++|+.-+..|..+ ..+.
T Consensus 33 ~l~~~Q~~~i~~~~~~----------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEG----------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCCHHHHHHHHHHHTT----------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhcC----------CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHH
Confidence 4678999997766532 3467888899999998888888776653 2569999888889888 6667
Q ss_pred hhhhCCCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhcc
Q 038397 290 LDDVGATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAK 365 (1102)
Q Consensus 290 l~diG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~ak 365 (1102)
+..++...+.|..+..-......-........|+++||..|...-......-... -++ .++ .+|||||||++.
T Consensus 103 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~-~~~-~~~-~~iIiDEah~~~ 175 (216)
T 3b6e_A 103 FQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAG-VQL-SDF-SLIIIDECHHTN 175 (216)
T ss_dssp HHHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------C-CCG-GGC-SEEEETTC----
T ss_pred HHHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccc-cch-hcc-cEEEEECchhhc
Confidence 7777655444433321100000000011235699999999875321111000000 011 122 489999999985
No 21
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.20 E-value=5.3e-05 Score=97.59 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=92.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.+.+.|.++|.-..+.. .+|.....++-.-||.||+-+..-.++.....|+ +++++.-...|-....+.++..-.
T Consensus 603 ~~t~~Q~~ai~~il~~~----~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~-~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK-QVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CCCHHHHHHHHHHHHHH----HSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHH----hcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC-eEEEEechHHHHHHHHHHHHHHhh
Confidence 35788999976555431 1122234455556999999776555666666776 699999888899888888876533
Q ss_pred -CcccccccCCCCCCcCCCCcc-cc---ccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 296 -TCIEVHALNKLPYSKLDSRSV-GI---REGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 296 -~~i~v~~l~~~~~~~~~~~~~-~~---~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
..+.|.-++.+..++-....+ .+ +-.||++|+..|... -.+ .++ ++||+||||+..
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-----~~~--------~~l-~lvIiDEaH~~g----- 738 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-----VKF--------KDL-GLLIVDEEHRFG----- 738 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC-----CCC--------SSE-EEEEEESGGGSC-----
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC-----ccc--------ccc-ceEEEechHhcC-----
Confidence 244444444332110000000 12 235999999877421 111 122 699999999942
Q ss_pred CCCCchhHHHHHHHHhhhCCCccEEEEecCCC
Q 038397 371 AGSQPTRTGEAVLELQARLPEARVVYCSATGA 402 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~lP~ARvvY~SATga 402 (1102)
.++-.. |....++.+++..|||-.
T Consensus 739 -----~~~~~~---l~~l~~~~~vl~lSATp~ 762 (1151)
T 2eyq_A 739 -----VRHKER---IKAMRANVDILTLTATPI 762 (1151)
T ss_dssp -----HHHHHH---HHHHHTTSEEEEEESSCC
T ss_pred -----hHHHHH---HHHhcCCCCEEEEcCCCC
Confidence 222222 334445689999999963
No 22
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.19 E-value=1.2e-06 Score=89.13 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=100.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc-----cCceEEEEEcCCchhhhHHhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH-----GRRKALWISVGSDLKFDARRDL 290 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~-----Gr~~~~w~s~s~~L~~Da~RDl 290 (1102)
.+++-|.+++..+.+. ..+++-..||.||+....-.|++.... ...+++|+.-+..|..+..+.+
T Consensus 23 ~~~~~Q~~~i~~~~~~----------~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 92 (207)
T 2gxq_A 23 TPTPIQAAALPLALEG----------KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASEL 92 (207)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC----------CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHH
Confidence 5778899997665532 246777889999998766667776642 3457999999999999999999
Q ss_pred hhhCCCcccccccCC-CCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCC
Q 038397 291 DDVGATCIEVHALNK-LPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVP 369 (1102)
Q Consensus 291 ~diG~~~i~v~~l~~-~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~ 369 (1102)
+.++.. +.+..+.. ...... ...+.-...|+++|+..|...-..+.-. -..-.+||+||||++.+..
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~---------~~~~~~iViDEah~~~~~~- 160 (207)
T 2gxq_A 93 TAVAPH-LKVVAVYGGTGYGKQ-KEALLRGADAVVATPGRALDYLRQGVLD---------LSRVEVAVLDEADEMLSMG- 160 (207)
T ss_dssp HHHCTT-SCEEEECSSSCSHHH-HHHHHHCCSEEEECHHHHHHHHHHTSSC---------CTTCSEEEEESHHHHHHTT-
T ss_pred HHHhhc-ceEEEEECCCChHHH-HHHhhCCCCEEEECHHHHHHHHHcCCcc---------hhhceEEEEEChhHhhccc-
Confidence 988754 33322211 000000 0001123469999998876431111100 0112589999999986431
Q ss_pred CCCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCCc
Q 038397 370 EAGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPRN 407 (1102)
Q Consensus 370 ~~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~N 407 (1102)
.+..+..+-+.+| +.+++..|||-..+.++
T Consensus 161 --------~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 191 (207)
T 2gxq_A 161 --------FEEEVEALLSATPPSRQTLLFSATLPSWAKR 191 (207)
T ss_dssp --------CHHHHHHHHHTSCTTSEEEEECSSCCHHHHH
T ss_pred --------hHHHHHHHHHhCCccCeEEEEEEecCHHHHH
Confidence 2233444445555 67899999997544443
No 23
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.18 E-value=4.1e-06 Score=86.43 Aligned_cols=162 Identities=18% Similarity=0.186 Sum_probs=99.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc--CceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG--RRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G--r~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+.+-|.+++....+. .-+++-..||.||+-..+-.+++.+... ..+++++.-+..|..+..+.++.+
T Consensus 36 ~~~~~Q~~~i~~~~~~----------~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 36 EPSAIQQRAIMPIIEG----------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcC----------CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 4789999997655432 2367778899999987655566665432 347999999999999999999888
Q ss_pred CCC-cccccccCCC-CCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCC
Q 038397 294 GAT-CIEVHALNKL-PYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEA 371 (1102)
Q Consensus 294 G~~-~i~v~~l~~~-~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~ 371 (1102)
+.. .+.+..+..- .... ..+.+ ....|+++|+..|...-..+... + +.=.+|||||||.+.+..
T Consensus 106 ~~~~~~~~~~~~g~~~~~~-~~~~~-~~~~iiv~Tp~~l~~~~~~~~~~-------~--~~~~~iViDEah~~~~~~--- 171 (224)
T 1qde_A 106 AFHMDIKVHACIGGTSFVE-DAEGL-RDAQIVVGTPGRVFDNIQRRRFR-------T--DKIKMFILDEADEMLSSG--- 171 (224)
T ss_dssp TTTSCCCEEEECC-----------C-TTCSEEEECHHHHHHHHHTTSSC-------C--TTCCEEEEETHHHHHHTT---
T ss_pred hcccCceEEEEeCCcchHH-HHhcC-CCCCEEEECHHHHHHHHHhCCcc-------h--hhCcEEEEcChhHHhhhh---
Confidence 653 3333322110 0000 00001 12579999999886431111110 0 112589999999976431
Q ss_pred CCCchhHHHHHHHHhhhC-CCccEEEEecCCCCCCCc
Q 038397 372 GSQPTRTGEAVLELQARL-PEARVVYCSATGASEPRN 407 (1102)
Q Consensus 372 ~~~~s~~g~avl~LQ~~l-P~ARvvY~SATgasep~N 407 (1102)
.+..+..+.+.+ ++.+++..|||-..+..+
T Consensus 172 ------~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~ 202 (224)
T 1qde_A 172 ------FKEQIYQIFTLLPPTTQVVLLSATMPNDVLE 202 (224)
T ss_dssp ------CHHHHHHHHHHSCTTCEEEEEESSCCHHHHH
T ss_pred ------hHHHHHHHHHhCCccCeEEEEEeecCHHHHH
Confidence 223344455555 467899999996544333
No 24
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.16 E-value=2.5e-06 Score=86.75 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=100.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+++-|.+++....+. ..+++-..||.||+-...-.+++.+.. ...+++++.-+..|..+..+.++.+
T Consensus 25 ~~~~~Q~~~i~~~~~~----------~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 25 KPSPIQEESIPIALSG----------RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccC----------CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 4778999997655432 346777889999996655456666543 2346999999999999999999888
Q ss_pred CCC--cccccccCCC-CCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT--CIEVHALNKL-PYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~--~i~v~~l~~~-~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.+..+..- ...+ ....+.-...|+++|+..|...-.++... + .+ =.+|||||||.+...
T Consensus 95 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-------~-~~-~~~lViDEah~~~~~--- 161 (206)
T 1vec_A 95 SKHMGGAKVMATTGGTNLRD-DIMRLDDTVHVVIATPGRILDLIKKGVAK-------V-DH-VQMIVLDEADKLLSQ--- 161 (206)
T ss_dssp TTTSSSCCEEEECSSSCHHH-HHHHTTSCCSEEEECHHHHHHHHHTTCSC-------C-TT-CCEEEEETHHHHTST---
T ss_pred HhhcCCceEEEEeCCccHHH-HHHhcCCCCCEEEeCHHHHHHHHHcCCcC-------c-cc-CCEEEEEChHHhHhh---
Confidence 643 2333222110 0000 00001113359999999886432111110 0 11 248999999997642
Q ss_pred CCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCCc
Q 038397 371 AGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPRN 407 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~N 407 (1102)
.-+..+..+.+.+| +.+++..|||-..+..+
T Consensus 162 ------~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~ 193 (206)
T 1vec_A 162 ------DFVQIMEDIILTLPKNRQILLYSATFPLSVQK 193 (206)
T ss_dssp ------TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHH
T ss_pred ------CcHHHHHHHHHhCCccceEEEEEeeCCHHHHH
Confidence 13445566667777 78999999997544433
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.14 E-value=1.8e-06 Score=89.74 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=98.4
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--------cCceEEEEEcCCchhhhHH
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--------GRRKALWISVGSDLKFDAR 287 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--------Gr~~~~w~s~s~~L~~Da~ 287 (1102)
.++.-|.+++..+.+. .-.++--.||-||+-...-.++..... ...+++++.-...|-.+..
T Consensus 42 ~~~~~Q~~~i~~~~~~----------~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQG----------IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHH
Confidence 5788999997655432 234666779999986544445554432 4456999999999999999
Q ss_pred hhhhhhCCCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhcccc
Q 038397 288 RDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNL 367 (1102)
Q Consensus 288 RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~ 367 (1102)
+.++.++...+.+..+..-....-....+.-.-.|+++|+..|...-..+...+ .++ .+||+||||++.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~--------~~~-~~lViDEah~~~~~ 182 (228)
T 3iuy_A 112 AECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL--------RSI-TYLVIDEADKMLDM 182 (228)
T ss_dssp HHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC--------TTC-CEEEECCHHHHHHT
T ss_pred HHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc--------ccc-eEEEEECHHHHhcc
Confidence 999988755554433321100000000011223699999988764211111000 112 58999999998754
Q ss_pred CCCCCCCchhHHHHHHHHhhhC-CCccEEEEecCCCCCCCccc
Q 038397 368 VPEAGSQPTRTGEAVLELQARL-PEARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 368 ~~~~~~~~s~~g~avl~LQ~~l-P~ARvvY~SATgasep~Nl~ 409 (1102)
. .+..+..+-..+ ++.+++..|||--.+.++++
T Consensus 183 ~---------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 216 (228)
T 3iuy_A 183 E---------FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLA 216 (228)
T ss_dssp T---------CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred c---------hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHH
Confidence 1 233344444444 47899999999655544443
No 26
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.13 E-value=2.4e-06 Score=88.37 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=98.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc--CceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG--RRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G--r~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+++-|.+++....+. .-+++-..||.||+-...-.|++.+... ..+++++.-...|..+..+.++.+
T Consensus 26 ~~~~~Q~~~i~~~~~~----------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 26 KPTEIQERIIPGALRG----------ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp SCCHHHHHHHHHHHHT----------CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 4678899997655542 2356777899999876655566665542 357999999999999998888887
Q ss_pred CCC-----cccccccCCC-CCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhcccc
Q 038397 294 GAT-----CIEVHALNKL-PYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNL 367 (1102)
Q Consensus 294 G~~-----~i~v~~l~~~-~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~ 367 (1102)
+.. .+.+..+..- ...+ ..+.+.-...|+++|+..|...-..+...+ .+ =.+||+||||.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~--------~~-~~~lViDEah~~~~~ 165 (219)
T 1q0u_A 96 TKFCPKDRMIVARCLIGGTDKQK-ALEKLNVQPHIVIGTPGRINDFIREQALDV--------HT-AHILVVDEADLMLDM 165 (219)
T ss_dssp HTTSCGGGCCCEEEECCCSHHHH-TTCCCSSCCSEEEECHHHHHHHHHTTCCCG--------GG-CCEEEECSHHHHHHT
T ss_pred hhhcccccceEEEEEeCCCCHHH-HHHHcCCCCCEEEeCHHHHHHHHHcCCCCc--------Cc-ceEEEEcCchHHhhh
Confidence 643 1222111110 0000 001111234599999988864321111111 11 258999999998643
Q ss_pred CCCCCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCC
Q 038397 368 VPEAGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPR 406 (1102)
Q Consensus 368 ~~~~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~ 406 (1102)
. -+..+..+-+.+| +.+++..|||--.+.+
T Consensus 166 ~---------~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 166 G---------FITDVDQIAARMPKDLQMLVFSATIPEKLK 196 (219)
T ss_dssp T---------CHHHHHHHHHTSCTTCEEEEEESCCCGGGH
T ss_pred C---------hHHHHHHHHHhCCcccEEEEEecCCCHHHH
Confidence 1 2344555666775 6789999999744433
No 27
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.11 E-value=4.4e-06 Score=86.13 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=101.8
Q ss_pred cccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc--CceEEEEEcCCchhhhHHhhhhhhC
Q 038397 217 LSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG--RRKALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 217 LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G--r~~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
+++-|.+++....+. .-.++-..||.||+-...-.+++.+..+ ..+++++.-+..|..+..+.++.++
T Consensus 37 ~~~~Q~~~i~~~~~~----------~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 37 PSEVQHECIPQAILG----------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 778899997655542 1267777899999977666677776553 3479999999999999999988886
Q ss_pred CC--cccccccCCCCCCcCCCCc-c-cc---ccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhcccc
Q 038397 295 AT--CIEVHALNKLPYSKLDSRS-V-GI---REGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNL 367 (1102)
Q Consensus 295 ~~--~i~v~~l~~~~~~~~~~~~-~-~~---~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~ 367 (1102)
.. .+.+.-+. |..+... . .+ ...|+++|+..|...-..+.-.+ .++ .+|||||||++.+.
T Consensus 107 ~~~~~~~v~~~~----g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~--------~~~-~~lViDEah~~~~~ 173 (220)
T 1t6n_A 107 KYMPNVKVAVFF----GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL--------KHI-KHFILDECDKMLEQ 173 (220)
T ss_dssp TTSTTCCEEEES----CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC--------TTC-CEEEEESHHHHHSS
T ss_pred hhCCCceEEEEe----CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCc--------ccC-CEEEEcCHHHHhcc
Confidence 43 23332221 1100000 0 11 22699999998864321111000 122 58999999998632
Q ss_pred CCCCCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCCccc
Q 038397 368 VPEAGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 368 ~~~~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~Nl~ 409 (1102)
......+..+-+.+| +.+++..|||-..+..+++
T Consensus 174 --------~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 208 (220)
T 1t6n_A 174 --------LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC 208 (220)
T ss_dssp --------HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHH
T ss_pred --------cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHH
Confidence 122334445555665 6799999999876665543
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.02 E-value=1.1e-05 Score=97.22 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=100.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC----ceEEEEEcCCchhhhHHhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR----RKALWISVGSDLKFDARRDLD 291 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr----~~~~w~s~s~~L~~Da~RDl~ 291 (1102)
.|.+-|.++|..+.+. ...++.+.||.||+.+..-+|++...++. .++|++.-...|..+..+.++
T Consensus 13 ~lr~~Q~~~i~~~l~g----------~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 13 KPRNYQLELALPAMKG----------KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp CCCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHcC----------CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4678999997766431 35678888999999987777877776654 679999988899999999998
Q ss_pred hhCCC-cccccccCCC-CCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCC
Q 038397 292 DVGAT-CIEVHALNKL-PYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVP 369 (1102)
Q Consensus 292 diG~~-~i~v~~l~~~-~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~ 369 (1102)
.+... .+.|..+..- .... ....+.-...||++||-.|...-..+.- .++ .++ .+|||||||++++..
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~-~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~------~~l-~~~-~~vViDEaH~~~~~~- 152 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENV-PVEQIVENNDIIILTPQILVNNLKKGTI------PSL-SIF-TLMIFDECHNTSKQH- 152 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSS-CHHHHHHTCSEEEECHHHHHHHHHTTSS------CCG-GGC-SEEEEETGGGCSTTC-
T ss_pred HHhccCCceEEEEeCCccccc-cHHHhccCCCEEEECHHHHHHHHhcCcc------ccc-ccc-cEEEEeCCCcccCcc-
Confidence 88642 3444333211 0000 0000112356999999998643211110 001 112 599999999998542
Q ss_pred CCCCCchhHHHHHHHHhhh-----CCCccEEEEecCCC
Q 038397 370 EAGSQPTRTGEAVLELQAR-----LPEARVVYCSATGA 402 (1102)
Q Consensus 370 ~~~~~~s~~g~avl~LQ~~-----lP~ARvvY~SATga 402 (1102)
+.......-|... -+..+++..|||-.
T Consensus 153 ------~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 153 ------PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp ------HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred ------cHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 2222221122222 26789999999965
No 29
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.99 E-value=1.4e-05 Score=84.91 Aligned_cols=138 Identities=20% Similarity=0.116 Sum_probs=90.5
Q ss_pred CCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhC
Q 038397 215 KSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 215 g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
..|.+-|.+++....+. +.++ +-+.||.||+-+...++... ..+++++.-...|.....+.+..+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~---------~~~l-l~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVD---------KRGC-IVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFG 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTT---------SEEE-EEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCcCHHHHHHHHHHHhC---------CCEE-EEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 35778999996644322 2244 44579999998877776653 3468999888899999988888864
Q ss_pred CCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 295 ATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 295 ~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
...+ .-+... ......|+++||..|... ++ .+...| ++||+||||...+.
T Consensus 158 ~~~v--~~~~g~---------~~~~~~i~v~T~~~l~~~-------~~----~~~~~~-~llIiDEaH~l~~~------- 207 (237)
T 2fz4_A 158 EEYV--GEFSGR---------IKELKPLTVSTYDSAYVN-------AE----KLGNRF-MLLIFDEVHHLPAE------- 207 (237)
T ss_dssp GGGE--EEESSS---------CBCCCSEEEEEHHHHHHT-------HH----HHTTTC-SEEEEECSSCCCTT-------
T ss_pred CCeE--EEEeCC---------CCCcCCEEEEeHHHHHhh-------HH----HhcccC-CEEEEECCccCCCh-------
Confidence 3212 122110 112457999999988642 22 122233 59999999998642
Q ss_pred chhHHHHHHHHhhhCCCccEEEEecCCC
Q 038397 375 PTRTGEAVLELQARLPEARVVYCSATGA 402 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~lP~ARvvY~SATga 402 (1102)
+- ..+.+.++..+++..|||--
T Consensus 208 ---~~---~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 208 ---SY---VQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp ---TH---HHHHHTCCCSEEEEEEESCC
T ss_pred ---HH---HHHHHhccCCEEEEEecCCC
Confidence 11 12445677888999999954
No 30
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.99 E-value=1.3e-05 Score=84.75 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=96.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC-----------ceEEEEEcCCchhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR-----------RKALWISVGSDLKF 284 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr-----------~~~~w~s~s~~L~~ 284 (1102)
.+++-|.+++....+ + ..+++-..||.||+-...-.|++.+..++ .+++++.-...|..
T Consensus 45 ~~~~~Q~~~i~~i~~-~---------~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 114 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE-H---------RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 114 (253)
T ss_dssp SCCHHHHHHHHHHHT-T---------CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC-C---------CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHH
Confidence 478999999765443 2 23667778999999776666777776433 47999999999999
Q ss_pred hHHhhhhhhCCC-cccccccCCC-CCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecch
Q 038397 285 DARRDLDDVGAT-CIEVHALNKL-PYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECH 362 (1102)
Q Consensus 285 Da~RDl~diG~~-~i~v~~l~~~-~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH 362 (1102)
+..+.++.++.. .+.+..+..- .... ....+.....|+++|+..|...-..+... + ..=.+|||||||
T Consensus 115 q~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~-------~--~~~~~lViDEah 184 (253)
T 1wrb_A 115 QILSESQKFSLNTPLRSCVVYGGADTHS-QIREVQMGCHLLVATPGRLVDFIEKNKIS-------L--EFCKYIVLDEAD 184 (253)
T ss_dssp HHHHHHHHHHTTSSCCEEEECSSSCSHH-HHHHHSSCCSEEEECHHHHHHHHHTTSBC-------C--TTCCEEEEETHH
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHH-HHHHhCCCCCEEEECHHHHHHHHHcCCCC-------h--hhCCEEEEeCHH
Confidence 999988887643 3333222110 0000 00001123369999999886432111100 0 112489999999
Q ss_pred hccccCCCCCCCchhHHHHHHHHhh--hCC---CccEEEEecCCCCC
Q 038397 363 KAKNLVPEAGSQPTRTGEAVLELQA--RLP---EARVVYCSATGASE 404 (1102)
Q Consensus 363 ~akn~~~~~~~~~s~~g~avl~LQ~--~lP---~ARvvY~SATgase 404 (1102)
++.+.. -+..+..+-. .+| +.+++..|||--.+
T Consensus 185 ~~~~~~---------~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 185 RMLDMG---------FEPQIRKIIEESNMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp HHHHTT---------CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHH
T ss_pred HHHhCc---------hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHH
Confidence 986431 1222333333 345 57899999996433
No 31
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.97 E-value=8.9e-06 Score=84.97 Aligned_cols=160 Identities=15% Similarity=0.139 Sum_probs=99.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+++-|.+++....+ + ..+++-..||.||+-..+-.|++.+.. ...+++++.-...|..+..+.++.+
T Consensus 46 ~~~~~Q~~~i~~~~~-~---------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC-G---------LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp SCCHHHHHHHHHHHT-T---------CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-C---------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 377889999765443 2 236777889999998766667777643 2357999999999999999999998
Q ss_pred CCC--cccccccCC-CCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT--CIEVHALNK-LPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~--~i~v~~l~~-~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.+..+.. ..... . ...--+..|+++|+..|...-..+.-. + .++ .+||+||||++.+..
T Consensus 116 ~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~Iiv~Tp~~l~~~~~~~~~~-------~-~~~-~~lViDEah~~~~~~-- 182 (230)
T 2oxc_A 116 GIKMEGLECHVFIGGTPLSQ-D-KTRLKKCHIAVGSPGRIKQLIELDYLN-------P-GSI-RLFILDEADKLLEEG-- 182 (230)
T ss_dssp TTTSTTCCEEEECTTSCHHH-H-HHHTTSCSEEEECHHHHHHHHHTTSSC-------G-GGC-CEEEESSHHHHHSTT--
T ss_pred hcccCCceEEEEeCCCCHHH-H-HHhccCCCEEEECHHHHHHHHhcCCcc-------c-ccC-CEEEeCCchHhhcCc--
Confidence 753 333322211 00000 0 000013469999999886432211111 1 122 389999999986431
Q ss_pred CCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCC
Q 038397 371 AGSQPTRTGEAVLELQARLP-EARVVYCSATGASE 404 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgase 404 (1102)
.-+..+..+.+.+| +.+++..|||--.+
T Consensus 183 ------~~~~~~~~i~~~~~~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 183 ------SFQEQINWIYSSLPASKQMLAVSATYPEF 211 (230)
T ss_dssp ------SSHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred ------chHHHHHHHHHhCCCCCeEEEEEeccCHH
Confidence 12334455666777 67899999995433
No 32
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.94 E-value=1.4e-05 Score=83.46 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=100.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc------cCceEEEEEcCCchhhhHHhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH------GRRKALWISVGSDLKFDARRD 289 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~------Gr~~~~w~s~s~~L~~Da~RD 289 (1102)
.+++-|.+++..+.+. ..+++-..||.||+-...-.|++...+ ...+++++.-+..|..+..+.
T Consensus 47 ~~~~~Q~~~i~~~~~~----------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQG----------KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp BCCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 4678899997655432 236777889999998766556666543 345699999999999999999
Q ss_pred hhhhCCC-cccccccCCCCCCcCCC-Ccc--ccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhcc
Q 038397 290 LDDVGAT-CIEVHALNKLPYSKLDS-RSV--GIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAK 365 (1102)
Q Consensus 290 l~diG~~-~i~v~~l~~~~~~~~~~-~~~--~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~ak 365 (1102)
++.++.. .+.+..+. |..+. ... --...|+++||..|...-.... .+.-.++ .+||+||||++.
T Consensus 117 ~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~-------~~~~~~~-~~lViDEah~~~ 184 (236)
T 2pl3_A 117 LRKVGKNHDFSAGLII----GGKDLKHEAERINNINILVCTPGRLLQHMDETV-------SFHATDL-QMLVLDEADRIL 184 (236)
T ss_dssp HHHHTTTSSCCEEEEC----CC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS-------SCCCTTC-CEEEETTHHHHH
T ss_pred HHHHhCCCCeeEEEEE----CCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC-------Ccccccc-cEEEEeChHHHh
Confidence 9998753 23332221 10000 000 0134699999998853211000 0000122 489999999987
Q ss_pred ccCCCCCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCCc
Q 038397 366 NLVPEAGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPRN 407 (1102)
Q Consensus 366 n~~~~~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~N 407 (1102)
+.. -+..+..+-+.+| +.+++..|||-..+.++
T Consensus 185 ~~~---------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 218 (236)
T 2pl3_A 185 DMG---------FADTMNAVIENLPKKRQTLLFSATQTKSVKD 218 (236)
T ss_dssp HTT---------THHHHHHHHHTSCTTSEEEEEESSCCHHHHH
T ss_pred cCC---------cHHHHHHHHHhCCCCCeEEEEEeeCCHHHHH
Confidence 541 1234445556676 55699999997555444
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.93 E-value=2.2e-05 Score=91.97 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=99.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC--ceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR--RKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr--~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+...|.++|.-.. ++ ...-+++...||.||+-+..-.|++...+++ .+++++.-...|..+..+.++.+
T Consensus 141 ~p~~~Q~~ai~~i~-~~-------~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 141 XXXKIQEKALPLLL-SN-------PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp ECCCTTSSSHHHHH-CS-------SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH-cC-------CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 37788999964443 32 1245677778999999887777888776664 47999999999999999999998
Q ss_pred CCC-cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCC
Q 038397 294 GAT-CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAG 372 (1102)
Q Consensus 294 G~~-~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 372 (1102)
+.. .+.+.... +............|+++|+..|...-..+ +..-+.=++||+||||.....
T Consensus 213 ~~~~~~~~~~~~----~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~---------~~~~~~~~lIIiDEaH~~~~~----- 274 (508)
T 3fho_A 213 GKYTEVKTAFGI----KDSVPKGAKIDAQIVIGTPGTVMDLMKRR---------QLDARDIKVFVLDEADNMLDQ----- 274 (508)
T ss_dssp STTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT---------CSCCTTCCEEEECCHHHHTTC-----
T ss_pred CCccCeeEEEEe----CCcccccccCCCCEEEECHHHHHHHHHcC---------CccccCCCEEEEechhhhccc-----
Confidence 753 22222111 10000111234579999999986432111 111122369999999998642
Q ss_pred CCchhHHHHHHHHhhhCC-CccEEEEecCC
Q 038397 373 SQPTRTGEAVLELQARLP-EARVVYCSATG 401 (1102)
Q Consensus 373 ~~~s~~g~avl~LQ~~lP-~ARvvY~SATg 401 (1102)
...+.....+.+.++ +.++|..|||-
T Consensus 275 ---~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 275 ---QGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp -----CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ---CCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 123344455556565 67899999993
No 34
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.92 E-value=9.1e-06 Score=86.50 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=100.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC--ceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR--RKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr--~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+++-|.+++....+. ..+++-..||.||+-...-.|++.+..+. .+++++.-...|..+..+.++.+
T Consensus 65 ~~~~~Q~~~i~~i~~~----------~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 65 KPTKIQIEAIPLALQG----------RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4678899996655432 34667778999999877667777776653 46999999999999999888887
Q ss_pred CCC-cccccccCCCCCCcCCC----CccccccceEEeehhhhhhccccccchHHHHHHHhccCC--CceEEeecchhccc
Q 038397 294 GAT-CIEVHALNKLPYSKLDS----RSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGY--DGLVIFDECHKAKN 366 (1102)
Q Consensus 294 G~~-~i~v~~l~~~~~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~df--dgvivfDEcH~akn 366 (1102)
+.. .+.+..+. |..+. ..+.-+..|+++|+..|...-. .+-.-++ =.+|||||||++.+
T Consensus 135 ~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~----------~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 135 GSSIGVQSAVIV----GGIDSMSQSLALAKKPHIIIATPGRLIDHLE----------NTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HGGGTCCEEEEC----TTSCHHHHHHHHHTCCSEEEECHHHHHHHHH----------HSTTCCCTTCCEEEECSHHHHHH
T ss_pred hccCCeeEEEEE----CCCChHHHHHHhcCCCCEEEECHHHHHHHHH----------cCCCcCccccCEEEEcChhhhhc
Confidence 542 23222221 10000 0011234699999998864211 1100012 24899999999875
Q ss_pred cCCCCCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCCcc
Q 038397 367 LVPEAGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPRNM 408 (1102)
Q Consensus 367 ~~~~~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~Nl 408 (1102)
.. -+..+..+-+.+| +.+++..|||--.+.+++
T Consensus 201 ~~---------~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~ 234 (249)
T 3ber_A 201 MD---------FETEVDKILKVIPRDRKTFLFSATMTKKVQKL 234 (249)
T ss_dssp TT---------CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHH
T ss_pred cC---------hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHH
Confidence 41 2333455556665 678999999976554443
No 35
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.90 E-value=3.7e-05 Score=85.45 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=98.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCc--eEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRR--KALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~--~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.++.-|.+++....+. ...-+++-..||.||+-...-.|++.+..+.+ +++++.-...|..+..+.++.+
T Consensus 47 ~~~~~Q~~~i~~~~~~--------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 47 RPSKIQENALPLMLAE--------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp SCCHHHHHHHHHHHSS--------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC--------CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 5778899996555442 12456777789999998766667777765543 7999999999999998888888
Q ss_pred CCC--cccccccCCCCCCcCCCCccccccceEEeehhhhhhcccc-ccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT--CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEK-GRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~--~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~-~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.+...... .... ........|+++|+..|...-.+ +...+ .++ .+|||||||.+....
T Consensus 119 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~--------~~~-~~iViDEah~~~~~~-- 184 (412)
T 3fht_A 119 GKFYPELKLAYAVRG--NKLE-RGQKISEQIVIGTPGTVLDWCSKLKFIDP--------KKI-KVFVLDEADVMIATQ-- 184 (412)
T ss_dssp TTTSTTCCEEEECTT--CCCC-TTCCCCCSEEEECHHHHHHHHTTSCSSCG--------GGC-CEEEEETHHHHHSTT--
T ss_pred HhhcccceEEEeecC--cchh-hhhcCCCCEEEECchHHHHHHHhcCCcCh--------hhC-cEEEEeCHHHHhhcC--
Confidence 753 2322211110 0000 11123457999999988643111 11111 122 599999999986421
Q ss_pred CCCCchhHHHHHHHHhhhCC-CccEEEEecCC
Q 038397 371 AGSQPTRTGEAVLELQARLP-EARVVYCSATG 401 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATg 401 (1102)
........+.+.++ +.+++.+|||-
T Consensus 185 ------~~~~~~~~~~~~~~~~~~~i~~SAT~ 210 (412)
T 3fht_A 185 ------GHQDQSIRIQRMLPRNCQMLLFSATF 210 (412)
T ss_dssp ------TTHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred ------CcHHHHHHHHhhCCCCceEEEEEeec
Confidence 11223334445554 56899999994
No 36
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.90 E-value=1.5e-05 Score=83.67 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=98.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+++-|.+++....+. .-+++-..||.||+-..+-.|++.+.. ...+++++.-...|..+..+.++.+
T Consensus 52 ~~~~~Q~~ai~~i~~~----------~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKG----------YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 4789999997765532 225677789999997766667776653 3457999999999999999999988
Q ss_pred CCC-cccccccCC-CCCCcCCCCcccc-ccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT-CIEVHALNK-LPYSKLDSRSVGI-REGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~-~i~v~~l~~-~~~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.+..+.. ..... .-..+.. .-.|+++|+..|...-..+ +..-+.=.+|||||||++.+..
T Consensus 122 ~~~~~~~~~~~~g~~~~~~-~~~~l~~~~~~Ilv~Tp~~l~~~l~~~---------~~~~~~~~~lViDEah~~~~~~-- 189 (237)
T 3bor_A 122 GDYMGATCHACIGGTNVRN-EMQKLQAEAPHIVVGTPGRVFDMLNRR---------YLSPKWIKMFVLDEADEMLSRG-- 189 (237)
T ss_dssp TTTTTCCEEEECC--------------CCCSEEEECHHHHHHHHHTT---------SSCSTTCCEEEEESHHHHHHTT--
T ss_pred hhhcCceEEEEECCCchHH-HHHHHhcCCCCEEEECHHHHHHHHHhC---------CcCcccCcEEEECCchHhhccC--
Confidence 753 333322211 00000 0001111 1459999998875431111 1111122599999999986431
Q ss_pred CCCCchhHHHHHHHHhhhC-CCccEEEEecCCCCCCCccc
Q 038397 371 AGSQPTRTGEAVLELQARL-PEARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~l-P~ARvvY~SATgasep~Nl~ 409 (1102)
-+..+..+-+.+ ++.+++..|||--.+..+++
T Consensus 190 -------~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 190 -------FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 222 (237)
T ss_dssp -------CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHH
T ss_pred -------cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHH
Confidence 122233344445 46799999999765544443
No 37
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.89 E-value=1.5e-05 Score=89.12 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=99.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHh--ccCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWH--HGRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l--~Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.++.-|.+++....+. ..+++...||.||+-...-.|++... ....+++++.-...|..+..+.++.+
T Consensus 59 ~~~~~Q~~ai~~i~~~----------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKG----------RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 4788999997765532 23678888999999887777777664 23457999999999999999999988
Q ss_pred CCC-cccccccCC-CCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCC
Q 038397 294 GAT-CIEVHALNK-LPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEA 371 (1102)
Q Consensus 294 G~~-~i~v~~l~~-~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~ 371 (1102)
+.. .+.+..+.. ..... ....+.....|+++||..|...-..+.-.+ .++ .+||+||||.+.+..
T Consensus 129 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~--------~~~-~~vViDEah~~~~~~--- 195 (410)
T 2j0s_A 129 GDYMNVQCHACIGGTNVGE-DIRKLDYGQHVVAGTPGRVFDMIRRRSLRT--------RAI-KMLVLDEADEMLNKG--- 195 (410)
T ss_dssp TTTTTCCEEEECTTSCHHH-HHHHHHHCCSEEEECHHHHHHHHHTTSSCC--------TTC-CEEEEETHHHHTSTT---
T ss_pred hccCCeEEEEEECCCCHHH-HHHHhhcCCCEEEcCHHHHHHHHHhCCccH--------hhe-eEEEEccHHHHHhhh---
Confidence 743 333322211 00000 000011234699999988864321111111 122 589999999987531
Q ss_pred CCCchhHHHHHHHHhhhC-CCccEEEEecCC
Q 038397 372 GSQPTRTGEAVLELQARL-PEARVVYCSATG 401 (1102)
Q Consensus 372 ~~~~s~~g~avl~LQ~~l-P~ARvvY~SATg 401 (1102)
....+..+.+.+ ++.++++.|||-
T Consensus 196 ------~~~~~~~i~~~~~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 196 ------FKEQIYDVYRYLPPATQVVLISATL 220 (410)
T ss_dssp ------THHHHHHHHTTSCTTCEEEEEESCC
T ss_pred ------hHHHHHHHHHhCccCceEEEEEcCC
Confidence 223444455566 467899999994
No 38
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.81 E-value=2.4e-05 Score=87.26 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=97.5
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.+..-|.+++....+. ..+++...||.||+-+..-.|++.+.. ...+++++.-...|.....+.++.+
T Consensus 62 ~~~~~Q~~~i~~~~~~----------~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 62 KPSAIQQRAILPCIKG----------YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhHHHhCC----------CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 4678899997655532 226778889999998877778877764 3456999999999999999999888
Q ss_pred CCC-cccccccCCC-CCCcCCCCccc-cccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT-CIEVHALNKL-PYSKLDSRSVG-IREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~-~i~v~~l~~~-~~~~~~~~~~~-~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.++.+..- .... .-.... -...|+++||..|...-.. .|+....=++|||||||.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~l~~---------~~~~~~~~~~vViDEah~~~~~~-- 199 (414)
T 3eiq_A 132 GDYMGASCHACIGGTNVRA-EVQKLQMEAPHIIVGTPGRVFDMLNR---------RYLSPKYIKMFVLDEADEMLSRG-- 199 (414)
T ss_dssp GGGSCCCEEECCCCTTHHH-HHHHHTTTCCSEEEECHHHHHHHHHH---------TSSCSTTCCEEEECSHHHHHHTT--
T ss_pred hcccCceEEEEECCcchHH-HHHHHhcCCCCEEEECHHHHHHHHHc---------CCcccccCcEEEEECHHHhhccC--
Confidence 642 2222221110 0000 000000 2346999999888643111 12211222599999999976431
Q ss_pred CCCCchhHHHHHHHHhhhC-CCccEEEEecCC
Q 038397 371 AGSQPTRTGEAVLELQARL-PEARVVYCSATG 401 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~l-P~ARvvY~SATg 401 (1102)
.+..+..+-.++ ++.++|.+|||-
T Consensus 200 -------~~~~~~~~~~~~~~~~~~i~~SAT~ 224 (414)
T 3eiq_A 200 -------FKDQIYDIFQKLNSNTQVVLLSATM 224 (414)
T ss_dssp -------THHHHHHHHTTSCTTCEEEEECSCC
T ss_pred -------cHHHHHHHHHhCCCCCeEEEEEEec
Confidence 223333444444 688999999995
No 39
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.80 E-value=2.5e-05 Score=84.24 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=93.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|.+-|.+++....+. ..+++...||.||+-.....+++. | .+++++.-...|..+..+.++.++.
T Consensus 16 ~l~~~Q~~~i~~i~~~----------~~~lv~~~TGsGKT~~~~~~~~~~---~-~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQG----------KNVVVRAKTGSGKTAAYAIPILEL---G-MKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHH---T-CCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcC----------CCEEEEcCCCCcHHHHHHHHHHhh---c-CCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4778999997654432 346778889999998777667664 4 4599999999999999999998874
Q ss_pred C-cccccccCC-CCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCC
Q 038397 296 T-CIEVHALNK-LPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGS 373 (1102)
Q Consensus 296 ~-~i~v~~l~~-~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~ 373 (1102)
. .+.+..+.. ..... . ...-....|+++||-.|...-..+...+ .+| ++||+||||.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~v~T~~~l~~~~~~~~~~~--------~~~-~~iViDEah~~~~~~----- 145 (337)
T 2z0m_A 82 YMDTKVAEVYGGMPYKA-Q-INRVRNADIVVATPGRLLDLWSKGVIDL--------SSF-EIVIIDEADLMFEMG----- 145 (337)
T ss_dssp TSCCCEEEECTTSCHHH-H-HHHHTTCSEEEECHHHHHHHHHTTSCCG--------GGC-SEEEEESHHHHHHTT-----
T ss_pred hcCCcEEEEECCcchHH-H-HhhcCCCCEEEECHHHHHHHHHcCCcch--------hhC-cEEEEEChHHhhccc-----
Confidence 2 333322211 00000 0 0000135699999999875321111111 122 589999999987541
Q ss_pred CchhHHHHHHHHhhhCC-CccEEEEecCC
Q 038397 374 QPTRTGEAVLELQARLP-EARVVYCSATG 401 (1102)
Q Consensus 374 ~~s~~g~avl~LQ~~lP-~ARvvY~SATg 401 (1102)
....+..+-..++ ..++++.|||-
T Consensus 146 ----~~~~~~~~~~~~~~~~~~~~~SAT~ 170 (337)
T 2z0m_A 146 ----FIDDIKIILAQTSNRKITGLFSATI 170 (337)
T ss_dssp ----CHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred ----cHHHHHHHHhhCCcccEEEEEeCcC
Confidence 1222333444555 45677889995
No 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.75 E-value=2.7e-05 Score=86.01 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=96.5
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--cCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--GRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.|.+-|.+++....+. ..+++...||.||+....-.|++.+.. ...+++++.-+..|.....+.+..+
T Consensus 43 ~~~~~Q~~~i~~i~~~----------~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIEG----------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp SCCHHHHHHHHHHHHT----------CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 5788999997765542 236777889999998766666666553 2347999999999999999999887
Q ss_pred CCC-cccccccCCC-CCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCC
Q 038397 294 GAT-CIEVHALNKL-PYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEA 371 (1102)
Q Consensus 294 G~~-~i~v~~l~~~-~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~ 371 (1102)
+.. .+.+..+..- .... ....-....|+++||..|...-..+.-.+ .++ .+||+||||.+.+..
T Consensus 113 ~~~~~~~~~~~~g~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~--------~~~-~~vIiDEah~~~~~~--- 178 (394)
T 1fuu_A 113 AFHMDIKVHACIGGTSFVE--DAEGLRDAQIVVGTPGRVFDNIQRRRFRT--------DKI-KMFILDEADEMLSSG--- 178 (394)
T ss_dssp TTTSCCCEEEECSSCCHHH--HHHHHHHCSEEEECHHHHHHHHHTTSSCC--------TTC-CEEEEETHHHHHHTT---
T ss_pred hccCCeeEEEEeCCCchHH--HHhhcCCCCEEEECHHHHHHHHHhCCcch--------hhC-cEEEEEChHHhhCCC---
Confidence 643 3433322110 0000 00000145699999998864321111000 122 599999999975431
Q ss_pred CCCchhHHHHHHHHhhhC-CCccEEEEecCC
Q 038397 372 GSQPTRTGEAVLELQARL-PEARVVYCSATG 401 (1102)
Q Consensus 372 ~~~~s~~g~avl~LQ~~l-P~ARvvY~SATg 401 (1102)
....+..+-..+ ++.+++.+|||-
T Consensus 179 ------~~~~~~~~~~~~~~~~~~i~~SAT~ 203 (394)
T 1fuu_A 179 ------FKEQIYQIFTLLPPTTQVVLLSATM 203 (394)
T ss_dssp ------CHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred ------cHHHHHHHHHhCCCCceEEEEEEec
Confidence 222333444444 567899999993
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.71 E-value=5.8e-05 Score=91.82 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=99.3
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|..-|.+++.-+...+ .-.++.--||.||+-+..-.|++.+.+...+++++.-...|-.+..++|+.++.
T Consensus 30 ~l~~~Q~~~i~~~~~~~---------~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~ 100 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEG---------NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL 100 (715)
T ss_dssp BCCHHHHHHHHTTTTTT---------CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGG
T ss_pred CCCHHHHHHHHHHhcCC---------CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 47788999865433332 235666679999999988888888883335799999888899999988865543
Q ss_pred CcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCc
Q 038397 296 TCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQP 375 (1102)
Q Consensus 296 ~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~ 375 (1102)
..+.|.-+... .......+ -...|+++|+-.|.....++. .|+.. =++||+||+|...+.
T Consensus 101 ~g~~v~~~~G~--~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~-------~~l~~--~~~vIiDE~H~l~~~-------- 160 (715)
T 2va8_A 101 IGFKVAMTSGD--YDTDDAWL-KNYDIIITTYEKLDSLWRHRP-------EWLNE--VNYFVLDELHYLNDP-------- 160 (715)
T ss_dssp GTCCEEECCSC--SSSCCGGG-GGCSEEEECHHHHHHHHHHCC-------GGGGG--EEEEEECSGGGGGCT--------
T ss_pred CCCEEEEEeCC--CCCchhhc-CCCCEEEEcHHHHHHHHhCCh-------hHhhc--cCEEEEechhhcCCc--------
Confidence 22333222110 00000111 145699999987764322211 13321 169999999996532
Q ss_pred hhHHHHHHHHhhhCCCccEEEEecCC
Q 038397 376 TRTGEAVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 376 s~~g~avl~LQ~~lP~ARvvY~SATg 401 (1102)
.-|.....+..++++.|+|.+|||-
T Consensus 161 -~~~~~l~~i~~~~~~~~ii~lSATl 185 (715)
T 2va8_A 161 -ERGPVVESVTIRAKRRNLLALSATI 185 (715)
T ss_dssp -TTHHHHHHHHHHHHTSEEEEEESCC
T ss_pred -ccchHHHHHHHhcccCcEEEEcCCC
Confidence 2344455555677799999999994
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.69 E-value=0.00013 Score=88.80 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=101.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|..-|.+++.- ...+ .-.++.--||.||+-+..-.|++.+.+|. +++++.-...|-.+..++|+.++.
T Consensus 25 ~l~~~Q~~~i~~-i~~~---------~~~lv~apTGsGKT~~~~l~il~~~~~~~-~~l~i~P~r~La~q~~~~~~~~~~ 93 (702)
T 2p6r_A 25 ELFPPQAEAVEK-VFSG---------KNLLLAMPTAAGKTLLAEMAMVREAIKGG-KSLYVVPLRALAGEKYESFKKWEK 93 (702)
T ss_dssp CCCCCCHHHHHH-HTTC---------SCEEEECSSHHHHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHH-HhCC---------CcEEEEcCCccHHHHHHHHHHHHHHHhCC-cEEEEeCcHHHHHHHHHHHHHHHh
Confidence 467889888654 3222 34566777999999988778888888775 599999999999999999976544
Q ss_pred CcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCc
Q 038397 296 TCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQP 375 (1102)
Q Consensus 296 ~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~ 375 (1102)
..+.|.-+... .....+.. -...|+++|+-.|.....++.. |+.. =++||+||+|...+.. ..
T Consensus 94 ~g~~v~~~~G~--~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~-------~l~~--~~~vIiDE~H~l~~~~-----r~ 156 (702)
T 2p6r_A 94 IGLRIGISTGD--YESRDEHL-GDCDIIVTTSEKADSLIRNRAS-------WIKA--VSCLVVDEIHLLDSEK-----RG 156 (702)
T ss_dssp TTCCEEEECSS--CBCCSSCS-TTCSEEEEEHHHHHHHHHTTCS-------GGGG--CCEEEETTGGGGGCTT-----TH
T ss_pred cCCEEEEEeCC--CCcchhhc-cCCCEEEECHHHHHHHHHcChh-------HHhh--cCEEEEeeeeecCCCC-----cc
Confidence 33333222110 00000111 1457999999887654222211 2221 2699999999986421 12
Q ss_pred hhHHHHHHHHhhhCCCccEEEEecCC
Q 038397 376 TRTGEAVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 376 s~~g~avl~LQ~~lP~ARvvY~SATg 401 (1102)
...-..+..|...-|+.++|.+|||-
T Consensus 157 ~~~~~ll~~l~~~~~~~~ii~lSATl 182 (702)
T 2p6r_A 157 ATLEILVTKMRRMNKALRVIGLSATA 182 (702)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred cHHHHHHHHHHhcCcCceEEEECCCc
Confidence 33444444555556789999999993
No 43
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.66 E-value=8.3e-05 Score=85.73 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=95.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCc--eEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRR--KALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~--~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.++.-|.+++-...+. ...-+++-..||-||+-...-.|++.+..++. ++|++.-...|-.+..+.++.+
T Consensus 114 ~p~~~Q~~ai~~il~~--------~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 185 (479)
T 3fmp_B 114 RPSKIQENALPLMLAE--------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (479)
T ss_dssp SCCHHHHHHHHHHTSB--------SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC--------CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHH
Confidence 3555688886444321 23457777889999997766667777766654 7999999999999988888887
Q ss_pred CCC--cccccccCCCCCCcCCCCccccccceEEeehhhhhhcccc-ccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT--CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEK-GRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~--~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~-~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.+.....- ..+. ........||++|+..|...-.+ +.-.+ .+ =++|||||||.+....
T Consensus 186 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~--------~~-~~~iViDEah~~~~~~-- 251 (479)
T 3fmp_B 186 GKFYPELKLAYAVRG--NKLE-RGQKISEQIVIGTPGTVLDWCSKLKFIDP--------KK-IKVFVLDEADVMIATQ-- 251 (479)
T ss_dssp HTTSTTCCEEEESTT--CCCC-TTCCCCCSEEEECHHHHHHHHTTSCCCCG--------GG-CCEEEECCHHHHHTST--
T ss_pred HhhCCCceEEEEeCC--cccc-ccccCCCCEEEECchHHHHHHHhcCCcCc--------cc-CCEEEEECHHHHhhcC--
Confidence 643 2222111100 0000 11123457999999988542111 10001 11 2599999999986421
Q ss_pred CCCCchhHHHHHHHHhhhCC-CccEEEEecCC
Q 038397 371 AGSQPTRTGEAVLELQARLP-EARVVYCSATG 401 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATg 401 (1102)
.-......+.+.+| +.++|..|||-
T Consensus 252 ------~~~~~~~~i~~~~~~~~~~i~~SAT~ 277 (479)
T 3fmp_B 252 ------GHQDQSIRIQRMLPRNCQMLLFSATF 277 (479)
T ss_dssp ------THHHHHHHHHTTSCTTSEEEEEESCC
T ss_pred ------CcHHHHHHHHhhCCccceEEEEeCCC
Confidence 12233444555555 57899999994
No 44
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=1.7e-05 Score=73.72 Aligned_cols=51 Identities=33% Similarity=0.835 Sum_probs=46.0
Q ss_pred ccccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 659 EFQICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 659 Ef~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
+...|.+|+...+...|+.|+.|++.+|..|+.||+..+|.++|+|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345699999887778899999999999999999999999999999999974
No 45
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.59 E-value=8e-05 Score=78.06 Aligned_cols=168 Identities=16% Similarity=0.119 Sum_probs=97.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc---cCceEEEEEcCCchhhhHHhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH---GRRKALWISVGSDLKFDARRDLDD 292 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~---Gr~~~~w~s~s~~L~~Da~RDl~d 292 (1102)
.+++-|.+++....+ + ..+++--.||.||+-...-.|++.+.+ ...+++++.-...|..+..+.++.
T Consensus 51 ~~~~~Q~~~i~~~~~-~---------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH-G---------RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp SCCHHHHHHHHHHHT-T---------CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-C---------CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 478899999655443 2 235677779999987765566776654 334699999999999999999998
Q ss_pred hCCC-cccccccCCCC--CCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCC
Q 038397 293 VGAT-CIEVHALNKLP--YSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVP 369 (1102)
Q Consensus 293 iG~~-~i~v~~l~~~~--~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~ 369 (1102)
++.. .+.+..+.... .... .....-+-.||++|+-.|...-..+...+ .-.-=.+|||||||.+.....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~-------~~~~~~~lViDEah~~~~~~~ 192 (245)
T 3dkp_A 121 ISEGTGFRIHMIHKAAVAAKKF-GPKSSKKFDILVTTPNRLIYLLKQDPPGI-------DLASVEWLVVDESDKLFEDGK 192 (245)
T ss_dssp HTTTSCCCEECCCHHHHHHTTT-STTSCCCCCEEEECHHHHHHHHHSSSCSC-------CCTTCCEEEESSHHHHHHHC-
T ss_pred HhcccCceEEEEecCccHHHHh-hhhhcCCCCEEEECHHHHHHHHHhCCCCc-------ccccCcEEEEeChHHhccccc
Confidence 8653 33332221100 0000 00111233599999988864311110000 001124899999999864310
Q ss_pred CCCCCchhHHHHHHHHhhhC--CCccEEEEecCCCCCCCc
Q 038397 370 EAGSQPTRTGEAVLELQARL--PEARVVYCSATGASEPRN 407 (1102)
Q Consensus 370 ~~~~~~s~~g~avl~LQ~~l--P~ARvvY~SATgasep~N 407 (1102)
...-..+..+-..+ ++.+++..|||-..+..+
T Consensus 193 ------~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 193 ------TGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQ 226 (245)
T ss_dssp -------CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHH
T ss_pred ------ccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHH
Confidence 01122333333332 578999999997544433
No 46
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.57 E-value=0.00011 Score=80.70 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=100.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCc--eEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRR--KALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~--~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.++.-|.+++-.... |...-+++--.||-||+-...--|++.+...++ ++|+++-...|-.+..+.++.+
T Consensus 114 ~pt~iQ~~ai~~il~--------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 114 RPSKIQENALPLMLA--------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp SCCHHHHHHHHHHTS--------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 466678777543332 112346677779999987654456677665443 6999999999999999999988
Q ss_pred CCC--cccccccCCCCCCcCCCCccccccceEEeehhhhhhcccc-ccchHHHHHHHhccCCCceEEeecchhccccCCC
Q 038397 294 GAT--CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEK-GRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPE 370 (1102)
Q Consensus 294 G~~--~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~-~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~ 370 (1102)
+.. .+.+..+..- .... ........||++|...|...-.+ +.-.+. . =.+|||||||++.+..
T Consensus 186 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~--------~-l~~lVlDEad~l~~~~-- 251 (300)
T 3fmo_B 186 GKFYPELKLAYAVRG--NKLE-RGQKISEQIVIGTPGTVLDWCSKLKFIDPK--------K-IKVFVLDEADVMIATQ-- 251 (300)
T ss_dssp TTTSTTCCEEEESTT--CCCC-TTCCCCCSEEEECHHHHHHHHTTTCCCCGG--------G-CSEEEETTHHHHHHST--
T ss_pred HhhCCCcEEEEEeCC--ccHh-hhhcCCCCEEEECHHHHHHHHHhcCCCChh--------h-ceEEEEeCHHHHhhcc--
Confidence 753 2333222110 0000 11123446999999887532111 111111 1 1589999999987421
Q ss_pred CCCCchhHHHHHHHHhhhCC-CccEEEEecCCCCCCCccc
Q 038397 371 AGSQPTRTGEAVLELQARLP-EARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 371 ~~~~~s~~g~avl~LQ~~lP-~ARvvY~SATgasep~Nl~ 409 (1102)
.-+..+..+.+.+| +.+++..|||-..++.+++
T Consensus 252 ------~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 252 ------GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp ------THHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHH
T ss_pred ------CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHH
Confidence 13344555666665 4789999999877666655
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0002 Score=91.07 Aligned_cols=145 Identities=20% Similarity=0.216 Sum_probs=93.3
Q ss_pred cccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC
Q 038397 217 LSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 217 LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~ 296 (1102)
|..-|.++|.. ..++ ..+++...||.||+-...-.|+..+.+| .++++++-...|-.+..++++....
T Consensus 87 L~~~Q~eai~~-l~~g---------~~vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 87 LDPFQDTAISC-IDRG---------ESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCHHHHHHHHH-HHHT---------CEEEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCHHHHHHHHH-HHcC---------CCEEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHHHHHHHHHHhC-
Confidence 66899999654 4433 2467788899999986544566555555 5699999999999999999998765
Q ss_pred cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCch
Q 038397 297 CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPT 376 (1102)
Q Consensus 297 ~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s 376 (1102)
.+-+ + .|.. .+.-...||++|+-.|...-..+.. ++. ++ ++|||||||.+.+..
T Consensus 155 ~vgl--l----tGd~---~~~~~~~IvV~Tpe~L~~~L~~~~~-------~l~-~l-~lVViDEaH~l~d~~-------- 208 (1010)
T 2xgj_A 155 DVGL--M----TGDI---TINPDAGCLVMTTEILRSMLYRGSE-------VMR-EV-AWVIFDEVHYMRDKE-------- 208 (1010)
T ss_dssp CEEE--E----CSSC---EECTTCSEEEEEHHHHHHHHHHTCT-------TGG-GE-EEEEEETGGGGGCTT--------
T ss_pred CEEE--E----eCCC---ccCCCCCEEEEcHHHHHHHHHcCcc-------hhh-cC-CEEEEechhhhcccc--------
Confidence 2211 1 1211 1122346999999887642111111 111 11 589999999987541
Q ss_pred hHHHHHHHHhhhCC-CccEEEEecC
Q 038397 377 RTGEAVLELQARLP-EARVVYCSAT 400 (1102)
Q Consensus 377 ~~g~avl~LQ~~lP-~ARvvY~SAT 400 (1102)
.|.....+-..+| +.++|..|||
T Consensus 209 -rg~~~e~il~~l~~~~~il~LSAT 232 (1010)
T 2xgj_A 209 -RGVVWEETIILLPDKVRYVFLSAT 232 (1010)
T ss_dssp -THHHHHHHHHHSCTTCEEEEEECC
T ss_pred -hhHHHHHHHHhcCCCCeEEEEcCC
Confidence 2333333334554 6899999999
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.47 E-value=0.00021 Score=87.07 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=94.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|..-|.+++..+...+ .-+++.-.||-||+-+..-.|++.+++...+++++.-...|-.+..++|+.++.
T Consensus 23 ~l~~~Q~~~i~~~~~~~---------~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~ 93 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEG---------KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEK 93 (720)
T ss_dssp BCCHHHHHHHTTTGGGT---------CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGG
T ss_pred CCCHHHHHHHHHHhcCC---------CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 46778888854323332 235677779999998776667777773335699999999999999999976543
Q ss_pred CcccccccCCCCCCcCCCCc-cccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCC
Q 038397 296 TCIEVHALNKLPYSKLDSRS-VGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQ 374 (1102)
Q Consensus 296 ~~i~v~~l~~~~~~~~~~~~-~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~ 374 (1102)
..+.|.-+. |...... ..-+..|+++|+-.|.....++. .|+.. =++||+||+|.....
T Consensus 94 ~g~~v~~~~----G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~-------~~l~~--~~~vIiDE~H~l~~~------- 153 (720)
T 2zj8_A 94 IGLRVAMAT----GDYDSKDEWLGKYDIIIATAEKFDSLLRHGS-------SWIKD--VKILVADEIHLIGSR------- 153 (720)
T ss_dssp GTCCEEEEC----SCSSCCCGGGGGCSEEEECHHHHHHHHHHTC-------TTGGG--EEEEEEETGGGGGCT-------
T ss_pred cCCEEEEec----CCCCccccccCCCCEEEECHHHHHHHHHcCh-------hhhhc--CCEEEEECCcccCCC-------
Confidence 233332221 1111111 11245699999988864322111 12211 169999999998642
Q ss_pred chhHHHHHHHHhhhCC-CccEEEEecC
Q 038397 375 PTRTGEAVLELQARLP-EARVVYCSAT 400 (1102)
Q Consensus 375 ~s~~g~avl~LQ~~lP-~ARvvY~SAT 400 (1102)
..|.....+-.+++ +.++|.+|||
T Consensus 154 --~r~~~~~~ll~~l~~~~~ii~lSAT 178 (720)
T 2zj8_A 154 --DRGATLEVILAHMLGKAQIIGLSAT 178 (720)
T ss_dssp --TTHHHHHHHHHHHBTTBEEEEEECC
T ss_pred --cccHHHHHHHHHhhcCCeEEEEcCC
Confidence 12222222223332 7899999999
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.46 E-value=5.4e-05 Score=79.63 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=97.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc-------cCceEEEEEcCCchhhhHHh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH-------GRRKALWISVGSDLKFDARR 288 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~-------Gr~~~~w~s~s~~L~~Da~R 288 (1102)
.++.-|.+++-.+.+ + .-+++--.||-||+-...-.+++...+ ...+++++.-...|-.+..+
T Consensus 51 ~~~~~Q~~~i~~~~~-g---------~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS-G---------LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp SCCHHHHHHHHHHHH-T---------CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-C---------CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHH
Confidence 478899999755443 2 234555579999987655556666553 34569999999999999988
Q ss_pred hhhhhCCC-cccccccCCCCCCcCCCC----ccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchh
Q 038397 289 DLDDVGAT-CIEVHALNKLPYSKLDSR----SVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHK 363 (1102)
Q Consensus 289 Dl~diG~~-~i~v~~l~~~~~~~~~~~----~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~ 363 (1102)
.++.++.. .+.+..+. |..... .+.-.-.||++|+..|...-..+... + ..=.+|||||||+
T Consensus 121 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~-------~--~~~~~lViDEah~ 187 (242)
T 3fe2_A 121 VAAEYCRACRLKSTCIY----GGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTN-------L--RRTTYLVLDEADR 187 (242)
T ss_dssp HHHHHHHHTTCCEEEEC----TTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCC-------C--TTCCEEEETTHHH
T ss_pred HHHHHHhhcCceEEEEE----CCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCC-------c--ccccEEEEeCHHH
Confidence 88887432 22222221 100000 01112369999998875421111100 0 1124899999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHhhhC-CCccEEEEecCCCCCCCccc
Q 038397 364 AKNLVPEAGSQPTRTGEAVLELQARL-PEARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 364 akn~~~~~~~~~s~~g~avl~LQ~~l-P~ARvvY~SATgasep~Nl~ 409 (1102)
+.+.. -+..+..+-+.+ ++.+++..|||-..+.++++
T Consensus 188 l~~~~---------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~ 225 (242)
T 3fe2_A 188 MLDMG---------FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLA 225 (242)
T ss_dssp HHHTT---------CHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHH
T ss_pred HhhhC---------cHHHHHHHHHhCCccceEEEEEeecCHHHHHHH
Confidence 87531 344455555666 56789999999655544443
No 50
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.43 E-value=0.00015 Score=77.73 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=99.8
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc------cCceEEEEEcCCchhhhHHhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH------GRRKALWISVGSDLKFDARRD 289 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~------Gr~~~~w~s~s~~L~~Da~RD 289 (1102)
.++.-|.+++.-+.+. | -+++--.||-||+-...-.|++...+ +..+++++.-...|-.+..+.
T Consensus 76 ~~~~~Q~~~i~~~~~~---------~-~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~ 145 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG---------R-DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGV 145 (262)
T ss_dssp BCCHHHHHHHHHHHHT---------C-CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCC---------C-cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHH
Confidence 3778899986555432 2 24555669999987665556666553 455699999999999999999
Q ss_pred hhhhCCCc-ccccccCCCCCCcCCCC----ccccccceEEeehhhhhhcccccc-chHHHHHHHhccCCCceEEeecchh
Q 038397 290 LDDVGATC-IEVHALNKLPYSKLDSR----SVGIREGVVFLTYSSLIASSEKGR-SRLQQLVQWCGSGYDGLVIFDECHK 363 (1102)
Q Consensus 290 l~diG~~~-i~v~~l~~~~~~~~~~~----~~~~~~GvlF~TYs~L~~~~~~~~-sRl~Ql~~W~g~dfdgvivfDEcH~ 363 (1102)
++.++... +.+.-+. |..... .+.-+-.||++|+-.|...-.+.. -.+ .++ .+||+||||.
T Consensus 146 ~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~--------~~l-~~lViDEah~ 212 (262)
T 3ly5_A 146 LKELMTHHVHTYGLIM----GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMY--------KNL-QCLVIDEADR 212 (262)
T ss_dssp HHHHTTTCCSCEEEEC----SSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCC--------TTC-CEEEECSHHH
T ss_pred HHHHHhhcCceEEEEE----CCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCccc--------ccC-CEEEEcChHH
Confidence 99987642 2221111 100000 001123599999877753211100 000 112 5899999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHhhhCCC-ccEEEEecCCCCCCCccc
Q 038397 364 AKNLVPEAGSQPTRTGEAVLELQARLPE-ARVVYCSATGASEPRNMG 409 (1102)
Q Consensus 364 akn~~~~~~~~~s~~g~avl~LQ~~lP~-ARvvY~SATgasep~Nl~ 409 (1102)
+.... -+..+..+.+.+|. .++|..|||--.+..+++
T Consensus 213 l~~~~---------~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 213 ILDVG---------FEEELKQIIKLLPTRRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp HHHTT---------CHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred Hhhhh---------HHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 87531 33445566667764 679999999766655554
No 51
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.43 E-value=0.00015 Score=83.19 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=96.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhcc-------CceEEEEEcCCchhhhHHh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHG-------RRKALWISVGSDLKFDARR 288 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G-------r~~~~w~s~s~~L~~Da~R 288 (1102)
.++.-|.+++-...+. .-+++-..||-||+-...--|++.+++. ..++++++-...|-....+
T Consensus 78 ~pt~iQ~~ai~~i~~g----------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 147 (434)
T 2db3_A 78 IPTPIQKCSIPVISSG----------RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN 147 (434)
T ss_dssp SCCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC----------CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHH
Confidence 5788899987665432 3466777899999976655577777643 3479999999999999999
Q ss_pred hhhhhCCC-cccccccCCCCCCcCCC----CccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchh
Q 038397 289 DLDDVGAT-CIEVHALNKLPYSKLDS----RSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHK 363 (1102)
Q Consensus 289 Dl~diG~~-~i~v~~l~~~~~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~ 363 (1102)
.++.++.. .+.+..+ +|.... ..+.-.-.||++|+-.|...-..+...+ ..=.+|||||||+
T Consensus 148 ~~~~~~~~~~~~~~~~----~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l---------~~~~~lVlDEah~ 214 (434)
T 2db3_A 148 EARKFAFESYLKIGIV----YGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITF---------EDTRFVVLDEADR 214 (434)
T ss_dssp HHHHHTTTSSCCCCEE----CTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCC---------TTCCEEEEETHHH
T ss_pred HHHHHhccCCcEEEEE----ECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCccc---------ccCCeEEEccHhh
Confidence 99988753 2333222 111000 0011234699999988864311111101 1125899999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCC
Q 038397 364 AKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 364 akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATg 401 (1102)
+.+.. -..+-..++..-..-++.+++..|||-
T Consensus 215 ~~~~g------f~~~~~~i~~~~~~~~~~q~l~~SAT~ 246 (434)
T 2db3_A 215 MLDMG------FSEDMRRIMTHVTMRPEHQTLMFSATF 246 (434)
T ss_dssp HTSTT------THHHHHHHHHCTTSCSSCEEEEEESCC
T ss_pred hhccC------cHHHHHHHHHhcCCCCCceEEEEeccC
Confidence 87541 112222333222234778999999994
No 52
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.00012 Score=75.44 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=58.3
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.||.+..-..+ |...+|||.+.-+|+.||++|.+|. +--|.++ + -..|..+
T Consensus 98 ~~F~~g~~~vLvaT~~~~~Gldi~~v~~V--------I~~d~p~~~~~~~qr~GR~gR~g~~-g~~i~l~-~-~~~~~~~ 166 (191)
T 2p6n_A 98 EAFREGKKDVLVATDVASKGLDFPAIQHV--------INYDMPEEIENYVHRIGRTGCSGNT-GIATTFI-N-KACDESV 166 (191)
T ss_dssp HHHHHTSCSEEEECHHHHTTCCCCCCSEE--------EESSCCSSHHHHHHHHTTSCC---C-CEEEEEE-C-TTSCHHH
T ss_pred HHHhcCCCEEEEEcCchhcCCCcccCCEE--------EEeCCCCCHHHHHHHhCccccCCCC-cEEEEEE-c-CchhHHH
Confidence 68999999999999999999998754433 5578999999999999999999983 3333333 2 2345566
Q ss_pred HHHHHHHHhhcC
Q 038397 886 ASIVAKRLESLG 897 (1102)
Q Consensus 886 aS~VAkRLeSLG 897 (1102)
...+.+.|+.-+
T Consensus 167 ~~~l~~~l~~~~ 178 (191)
T 2p6n_A 167 LMDLKALLLEAK 178 (191)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcc
Confidence 666666665543
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0005 Score=88.33 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=96.3
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|..-|.++|.. ..++ ..+++.--||-||+-+..-.|+..+.+|. ++++++-...|-....++++....
T Consensus 184 ~ltp~Q~~AI~~-i~~g---------~dvLV~ApTGSGKTlva~l~i~~~l~~g~-rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 184 TLDPFQDTAISC-IDRG---------ESVLVSAHTSAGKTVVAEYAIAQSLKNKQ-RVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp CCCHHHHHHHHH-HTTT---------CCEEEECCSSSHHHHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHH-HHcC---------CCEEEECCCCCChHHHHHHHHHHHHhcCC-eEEEEcCcHHHHHHHHHHHHHHhC
Confidence 467889999554 4333 23466666999999876666777776665 599999999999999999999876
Q ss_pred CcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCc
Q 038397 296 TCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQP 375 (1102)
Q Consensus 296 ~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~ 375 (1102)
. +.+ + .|. ..+.-...||++|+-.|...-..+..-|.. =++|||||||.+...
T Consensus 253 ~-Vgl--l----tGd---~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~---------l~lVVIDEaH~l~d~-------- 305 (1108)
T 3l9o_A 253 D-VGL--M----TGD---ITINPDAGCLVMTTEILRSMLYRGSEVMRE---------VAWVIFDEVHYMRDK-------- 305 (1108)
T ss_dssp S-EEE--E----CSS---CBCCCSCSEEEEEHHHHHHHHHHCSSHHHH---------EEEEEEETGGGTTSH--------
T ss_pred C-ccE--E----eCc---cccCCCCCEEEeChHHHHHHHHcCcccccc---------CCEEEEhhhhhcccc--------
Confidence 2 211 1 111 112223569999998887542222222222 169999999988633
Q ss_pred hhHHHHHHHHhhhCC-CccEEEEecC
Q 038397 376 TRTGEAVLELQARLP-EARVVYCSAT 400 (1102)
Q Consensus 376 s~~g~avl~LQ~~lP-~ARvvY~SAT 400 (1102)
.-|....++-..+| +.++|..|||
T Consensus 306 -~rg~~~e~ii~~l~~~~qvl~lSAT 330 (1108)
T 3l9o_A 306 -ERGVVWEETIILLPDKVRYVFLSAT 330 (1108)
T ss_dssp -HHHHHHHHHHHHSCTTSEEEEEECS
T ss_pred -chHHHHHHHHHhcCCCceEEEEcCC
Confidence 23444444445554 6799999999
No 54
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.40 E-value=5.5e-05 Score=82.33 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=52.9
Q ss_pred hhhcCC-cceE-EEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCC-eEEEeecCccch
Q 038397 806 QLFMDG-KKLV-AIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAP-EYRIIFTNLGGE 882 (1102)
Q Consensus 806 ~~Fm~G-~K~V-AIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP-~Y~~l~T~l~GE 882 (1102)
++|++| +..| +|-++||+.||.|++-. .=|.+++|||...-+|..||+||-+|...- .|++++.+- -|
T Consensus 157 ~~F~~~~~~~v~L~st~~~g~Glnl~~a~--------~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T-iE 227 (271)
T 1z5z_A 157 SKFQNNPSVKFIVLSVKAGGFGINLTSAN--------RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT-LE 227 (271)
T ss_dssp HHHHHCTTCCEEEEECCTTCCCCCCTTCS--------EEEECSCCSCTTTC--------------CCEEEEEEETTS-HH
T ss_pred HHhcCCCCCCEEEEehhhhcCCcCcccCC--------EEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC-HH
Confidence 689999 5564 55559999999998532 337899999999999999999999998654 466666654 46
Q ss_pred hhhHHHHHHHHhhcCCcccc
Q 038397 883 RRFASIVAKRLESLGALTQG 902 (1102)
Q Consensus 883 rRFaS~VAkRLeSLGALT~G 902 (1102)
.+......++..-..++..+
T Consensus 228 e~i~~~~~~K~~l~~~~~~~ 247 (271)
T 1z5z_A 228 EKIDQLLAFKRSLFKDIISS 247 (271)
T ss_dssp HHHHHHHHHCHHHHTTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 66777777776665555544
No 55
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.38 E-value=0.00026 Score=70.39 Aligned_cols=76 Identities=17% Similarity=0.346 Sum_probs=59.9
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.|+.+..-. +-|.+.+|||...-+|+.||++|.+|. ..-|.++. ..|.++
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~--------~Vi~~~~p~~~~~~~qr~GR~~R~g~~-g~~~~~~~---~~~~~~ 146 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENIS--------LVINYDLPLEKESYVHRTGRTGRAGNK-GKAISFVT---AFEKRF 146 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCS--------EEEESSCCSSHHHHHHHTTTSSCTTCC-EEEEEEEC---GGGHHH
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCC--------EEEEeCCCCCHHHHHHhccccCcCCCC-ceEEEEec---HHHHHH
Confidence 689999999999999999999987533 335678999999999999999999974 33444443 457777
Q ss_pred HHHHHHHH
Q 038397 886 ASIVAKRL 893 (1102)
Q Consensus 886 aS~VAkRL 893 (1102)
...+.+.|
T Consensus 147 ~~~i~~~~ 154 (163)
T 2hjv_A 147 LADIEEYI 154 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666544
No 56
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.36 E-value=0.00017 Score=72.64 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=58.0
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.|+.+..-.. =|...+|||...-+|+.||++|.+|. +--|.++.. ..|..+
T Consensus 75 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~--------Vi~~d~p~~~~~~~qr~GR~~R~g~~-g~~~~~~~~--~~~~~~ 143 (172)
T 1t5i_A 75 QQFKDFQRRILVATNLFGRGMDIERVNI--------AFNYDMPEDSDTYLHRVARAGRFGTK-GLAITFVSD--ENDAKI 143 (172)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSE--------EEESSCCSSHHHHHHHHHHHTGGGCC-CEEEEEECS--HHHHHH
T ss_pred HHHHCCCCcEEEECCchhcCcchhhCCE--------EEEECCCCCHHHHHHHhcccccCCCC-cEEEEEEcC--hhHHHH
Confidence 6899999999999999999999975443 35688999999999999999999983 333433322 235555
Q ss_pred HHHHHHHH
Q 038397 886 ASIVAKRL 893 (1102)
Q Consensus 886 aS~VAkRL 893 (1102)
...+.+.+
T Consensus 144 ~~~l~~~~ 151 (172)
T 1t5i_A 144 LNDVQDRF 151 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 57
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.31 E-value=0.00012 Score=62.97 Aligned_cols=47 Identities=30% Similarity=0.892 Sum_probs=40.8
Q ss_pred cccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 660 FQICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 660 f~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
...|.+|+.. ..|+.|+.|.+.+|..|+.||+..++.++|+|+.|..
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 9 MEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp CSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 3458888754 3689999999999999999999999999999999974
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.29 E-value=0.00054 Score=87.09 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=90.7
Q ss_pred cccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC
Q 038397 217 LSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 217 LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~ 296 (1102)
|.+-|.++| .+..++ .-+++---||-||+-...-.|...+..| .++++++-...|-.+..++++....
T Consensus 40 l~~~Q~~aI-~~il~g---------~~vlv~apTGsGKTlv~~~~i~~~~~~g-~~vlvl~PtraLa~Q~~~~l~~~~~- 107 (997)
T 4a4z_A 40 LDTFQKEAV-YHLEQG---------DSVFVAAHTSAGKTVVAEYAIAMAHRNM-TKTIYTSPIKALSNQKFRDFKETFD- 107 (997)
T ss_dssp CCHHHHHHH-HHHHTT---------CEEEEECCTTSCSHHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred CCHHHHHHH-HHHHcC---------CCEEEEECCCCcHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHcC-
Confidence 558899984 455444 2355666699999975444455544455 4699999999999999999998753
Q ss_pred cccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCch
Q 038397 297 CIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPT 376 (1102)
Q Consensus 297 ~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s 376 (1102)
.+.|..+. |. ....-...|+++|.-.|.+.-..+.. ++. --++|||||||.+.+..
T Consensus 108 ~~~v~~l~----G~---~~~~~~~~IlV~Tpe~L~~~l~~~~~-------~l~--~l~lvViDEaH~l~d~~-------- 163 (997)
T 4a4z_A 108 DVNIGLIT----GD---VQINPDANCLIMTTEILRSMLYRGAD-------LIR--DVEFVIFDEVHYVNDQD-------- 163 (997)
T ss_dssp -CCEEEEC----SS---CEECTTSSEEEEEHHHHHHHHHHTCS-------GGG--GEEEEEECCTTCCCTTC--------
T ss_pred CCeEEEEe----CC---CccCCCCCEEEECHHHHHHHHHhCch-------hhc--CCCEEEEECcccccccc--------
Confidence 22232221 11 11122346999999988653221111 111 12699999999776542
Q ss_pred hHHHHHHHHhhhCC-CccEEEEecC
Q 038397 377 RTGEAVLELQARLP-EARVVYCSAT 400 (1102)
Q Consensus 377 ~~g~avl~LQ~~lP-~ARvvY~SAT 400 (1102)
-|....++-..+| +.++|..|||
T Consensus 164 -~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 164 -RGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp -TTCCHHHHHHHSCTTCEEEEEECC
T ss_pred -hHHHHHHHHHhcccCCCEEEEcCC
Confidence 1112233334454 6899999999
No 59
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.27 E-value=9.6e-05 Score=62.37 Aligned_cols=46 Identities=30% Similarity=0.909 Sum_probs=40.4
Q ss_pred cccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccch
Q 038397 660 FQICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCK 708 (1102)
Q Consensus 660 f~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCk 708 (1102)
...|.+|+.. ..|+.|+.|.+.+|..|+.||+..++.++|+|+.|.
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3458888764 368999999999999999999999999999999986
No 60
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.25 E-value=0.00029 Score=78.63 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=58.5
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.||.+..-. +=|...+|||.+..+|+.||++|.+|- -+.+++-+ ..|..+
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~--------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~-~~~~~~ 387 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVK--------HVINFDLPSDIEEYVHRIGRTGRVGNL---GLATSFFN-ERNINI 387 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEE--------EEEESSCCSSHHHHHHHHTTBCC--CC---EEEEEEEC-GGGGGG
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCC--------EEEEEcCCCCHHHHHHhcCccccCCCC---ceEEEEEc-cccHHH
Confidence 689999999999999999999987533 345578999999999999999999873 33333333 466677
Q ss_pred HHHHHHHHhh
Q 038397 886 ASIVAKRLES 895 (1102)
Q Consensus 886 aS~VAkRLeS 895 (1102)
+..+.+.|..
T Consensus 388 ~~~l~~~~~~ 397 (417)
T 2i4i_A 388 TKDLLDLLVE 397 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 61
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.25 E-value=0.00059 Score=87.06 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=100.1
Q ss_pred CcccchhhHHHHHHhhccc-----cCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc--c-CceEEEEEcCCchhhhHH
Q 038397 216 SLSCLQIETLVYASQRHLQ-----HLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH--G-RRKALWISVGSDLKFDAR 287 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~-----~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~--G-r~~~~w~s~s~~L~~Da~ 287 (1102)
.+..-|.+||.-+.++... .+. +.+.+.++-.-||.||+.++..++ . ++. + ..++|+++-..+|-.-+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~-~~~~~gli~~~TGSGKT~t~~~l~-~-ll~~~~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWS-KPESGGYIWHTTGSGKTLTSFKAA-R-LATELDFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCS-SGGGSEEEEECTTSSHHHHHHHHH-H-HHTTCTTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccc-cCCCCEEEEecCCCCHHHHHHHHH-H-HHHhcCCCceEEEEeCcHHHHHHHH
Confidence 3678899998876653211 111 123455666679999999986665 2 332 2 358999999999999888
Q ss_pred hhhhhhCCCcccccccCCCCCCcCCCCcc-ccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccc
Q 038397 288 RDLDDVGATCIEVHALNKLPYSKLDSRSV-GIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 288 RDl~diG~~~i~v~~l~~~~~~~~~~~~~-~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
+.+...+...+ ..... ...+. +.+ .-...|+|+||-+|...-..+.. + ..+. -..+||+||||++.
T Consensus 348 ~~f~~f~~~~v--~~~~s--~~~l~-~~L~~~~~~IiVtTiqkl~~~l~~~~~-~----~~~~--~~~lvIiDEAHrs~- 414 (1038)
T 2w00_A 348 KEYQRFSPDSV--NGSEN--TAGLK-RNLDKDDNKIIVTTIQKLNNLMKAESD-L----PVYN--QQVVFIFDECHRSQ- 414 (1038)
T ss_dssp HHHHTTSTTCS--SSSCC--CHHHH-HHHHCSSCCEEEEEHHHHHHHHHHCCC-C----GGGG--SCEEEEEESCCTTH-
T ss_pred HHHHHhccccc--ccccC--HHHHH-HHhcCCCCCEEEEEHHHHHHHHhcccc-h----hccc--cccEEEEEccchhc-
Confidence 88877764311 10000 00000 001 12457999999999753111100 0 0122 23699999999954
Q ss_pred cCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCCCCC
Q 038397 367 LVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGASE 404 (1102)
Q Consensus 367 ~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATgase 404 (1102)
.|.....|.+.+|++.++..|||....
T Consensus 415 -----------~~~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 415 -----------FGEAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp -----------HHHHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred -----------chHHHHHHHHhCCcccEEEEeCCcccc
Confidence 233445677899999999999998654
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.25 E-value=0.00041 Score=70.88 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=53.6
Q ss_pred HhhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhh
Q 038397 805 KQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERR 884 (1102)
Q Consensus 805 k~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErR 884 (1102)
-+.|.+|+..|+|-+++++.|+.+..-. +=|.+.+|||.+.-+|+.||++|.+|. +-.|.++. ..+..
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~--------~VI~~d~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~~---~~~~~ 156 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVK--------HVINFDLPSDIEEYVHRIGRTGRVGNL-GLATSFFN---ERNIN 156 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBS--------EEEESSCCSSHHHHHHHHTTBCCTTSC-EEEEEEEC---GGGGG
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCC--------EEEEeCCCCCHHHHHHHccccCCCCCC-cEEEEEEc---hhhHH
Confidence 3689999999999999999999986543 345589999999999999999999973 33333332 45666
Q ss_pred hHHHHHHHHhh
Q 038397 885 FASIVAKRLES 895 (1102)
Q Consensus 885 FaS~VAkRLeS 895 (1102)
+...+.+.|++
T Consensus 157 ~~~~l~~~l~~ 167 (185)
T 2jgn_A 157 ITKDLLDLLVE 167 (185)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66555555543
No 63
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.22 E-value=0.00015 Score=67.01 Aligned_cols=46 Identities=33% Similarity=0.874 Sum_probs=41.0
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|..|+... .|+.|+.|.+.+|..|+.||+..+|.++|+|+.|..
T Consensus 26 ~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 26 TICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 4688888653 689999999999999999999999999999999973
No 64
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.20 E-value=2.8e-05 Score=64.24 Aligned_cols=47 Identities=32% Similarity=0.899 Sum_probs=39.5
Q ss_pred ccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 663 ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
|.+|+..++...|+.|+.|.+.+|..|+.||+..++.++|+|+.|..
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 55555544445689999999999999999999999999999999974
No 65
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.16 E-value=0.00059 Score=80.16 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC------ceEEEEEcCCchhhhHHhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR------RKALWISVGSDLKFDARRD 289 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr------~~~~w~s~s~~L~~Da~RD 289 (1102)
.|+.-|.++|.-+.. +....+++.-.||.||+-...-.|++...+++ .++|+++-.-.|-.+..+.
T Consensus 94 ~~~~~Q~~~i~~~l~--------~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp SCCHHHHHHHHHHHS--------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--------CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH
Confidence 477889998655442 22456778888999999776666888887765 3699999999998888888
Q ss_pred hhhhCC-----CcccccccCCCCCCcCCC-Cc---c-ccccceEEeehhhhhhccccccchHHHH-HHHhccCCCceEEe
Q 038397 290 LDDVGA-----TCIEVHALNKLPYSKLDS-RS---V-GIREGVVFLTYSSLIASSEKGRSRLQQL-VQWCGSGYDGLVIF 358 (1102)
Q Consensus 290 l~diG~-----~~i~v~~l~~~~~~~~~~-~~---~-~~~~GvlF~TYs~L~~~~~~~~sRl~Ql-~~W~g~dfdgvivf 358 (1102)
++.+.. ..+.+..+. |..+. .. + ...-.||++|+..|...- ... ..++ +.=.+|||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l-------~~~~~~~~--~~~~~lVi 232 (563)
T 3i5x_A 166 VKKIHDMNYGLKKYACVSLV----GGTDFRAAMNKMNKLRPNIVIATPGRLIDVL-------EKYSNKFF--RFVDYKVL 232 (563)
T ss_dssp HHHHHHHCGGGTTSCEEEEC----TTSCHHHHHHHHHHHCCSEEEECHHHHHHHH-------HHHHHHHC--TTCCEEEE
T ss_pred HHHHHhhccccCceeEEEEE----CCcCHHHHHHHHhcCCCCEEEECcHHHHHHH-------Hhcccccc--ccceEEEE
Confidence 887632 222222221 10000 00 0 113469999999886421 111 0111 11258999
Q ss_pred ecchhccccCCCCCCCchhHHHHHHH-Hh----hhCCCccEEEEecCCCC
Q 038397 359 DECHKAKNLVPEAGSQPTRTGEAVLE-LQ----ARLPEARVVYCSATGAS 403 (1102)
Q Consensus 359 DEcH~akn~~~~~~~~~s~~g~avl~-LQ----~~lP~ARvvY~SATgas 403 (1102)
||||.+.... -...-..++. |. ...++.++|..|||-..
T Consensus 233 DEah~l~~~~------f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 233 DEADRLLEIG------FRDDLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp ETHHHHTSTT------THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred eCHHHHhccc------hHHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 9999987441 0111111211 21 22347789999999543
No 66
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00092 Score=70.22 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=73.5
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCc----eEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccc--
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRR----KALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVG-- 317 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~----~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~-- 317 (1102)
+++--.||.||+-++.-++++......+ +++.+.-.-.|-....+.+...-...+. ....++ +......
T Consensus 79 ~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~----~~~g~~-~~~~~~~~~ 153 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG----KSCGYS-VRFESILPR 153 (235)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT----SSEEEE-ETTEEECCC
T ss_pred EEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC----ceEEEe-echhhccCC
Confidence 3444459999999998888887765433 5676665555555554444332111110 000000 0000011
Q ss_pred cccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHH---HHHHHHhhhCCCccE
Q 038397 318 IREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTG---EAVLELQARLPEARV 394 (1102)
Q Consensus 318 ~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g---~avl~LQ~~lP~ARv 394 (1102)
...-|+++|.-.|... +++ -+ .++ .+||+||||++. -..+ ....++....|+.++
T Consensus 154 ~~~~Ivv~Tpg~l~~~-------l~~---~l-~~~-~~lVlDEah~~~----------~~~~~~~~~l~~i~~~~~~~~~ 211 (235)
T 3llm_A 154 PHASIMFCTVGVLLRK-------LEA---GI-RGI-SHVIVDEIHERD----------INTDFLLVVLRDVVQAYPEVRI 211 (235)
T ss_dssp SSSEEEEEEHHHHHHH-------HHH---CC-TTC-CEEEECCTTSCC----------HHHHHHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEECHHHHHHH-------HHh---hh-cCC-cEEEEECCccCC----------cchHHHHHHHHHHHhhCCCCeE
Confidence 1233999998666431 111 01 112 499999999731 1222 234455667799999
Q ss_pred EEEecCCCCC
Q 038397 395 VYCSATGASE 404 (1102)
Q Consensus 395 vY~SATgase 404 (1102)
+..|||-..+
T Consensus 212 il~SAT~~~~ 221 (235)
T 3llm_A 212 VLMSATIDTS 221 (235)
T ss_dssp EEEECSSCCH
T ss_pred EEEecCCCHH
Confidence 9999996543
No 67
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.14 E-value=0.00062 Score=80.86 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC------ceEEEEEcCCchhhhHHhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR------RKALWISVGSDLKFDARRD 289 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr------~~~~w~s~s~~L~~Da~RD 289 (1102)
.++.-|.++|.-+.. +....+++-..||.||+-...-.|++...+++ .++|+++-.-.|-.+..+.
T Consensus 43 ~~~~~Q~~~i~~il~--------~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp SCCHHHHHHHHHHHC--------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHH
Confidence 367889898655542 12356777788999999876666888887764 4799999999998888888
Q ss_pred hhhhCC-----CcccccccCCC-CCCcCCCCcc-ccccceEEeehhhhhhccccccchHHHH-HHHhccCCCceEEeecc
Q 038397 290 LDDVGA-----TCIEVHALNKL-PYSKLDSRSV-GIREGVVFLTYSSLIASSEKGRSRLQQL-VQWCGSGYDGLVIFDEC 361 (1102)
Q Consensus 290 l~diG~-----~~i~v~~l~~~-~~~~~~~~~~-~~~~GvlF~TYs~L~~~~~~~~sRl~Ql-~~W~g~dfdgvivfDEc 361 (1102)
++.++. ..+.+..+..- .+... -..+ .....||++|+-.|... |... ..++ +.=.+||||||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~-~~~l~~~~~~IlV~Tp~~l~~~-------l~~~~~~~~--~~~~~lViDEa 184 (579)
T 3sqw_A 115 VKKIHDMNYGLKKYACVSLVGGTDFRAA-MNKMNKLRPNIVIATPGRLIDV-------LEKYSNKFF--RFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHH-HHHHHHHCCSEEEECHHHHHHH-------HHHHHHHHC--TTCCEEEEETH
T ss_pred HHHHHhhcccccceEEEEEECCccHHHH-HHHHhcCCCCEEEECHHHHHHH-------HHhcccccc--ccCCEEEEECh
Confidence 887742 22222222110 00000 0000 11345999999888642 1111 1122 12358999999
Q ss_pred hhccccCCCCCCCchhHHHHHHHHhh-----hCCCccEEEEecCCCC
Q 038397 362 HKAKNLVPEAGSQPTRTGEAVLELQA-----RLPEARVVYCSATGAS 403 (1102)
Q Consensus 362 H~akn~~~~~~~~~s~~g~avl~LQ~-----~lP~ARvvY~SATgas 403 (1102)
|.+.... -...-..++.+-. ..++.+++..|||-..
T Consensus 185 h~l~~~g------f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 185 DRLLEIG------FRDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp HHHTSTT------THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHhhcCC------CHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 9987541 1112222222211 1236789999999543
No 68
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.13 E-value=9.7e-05 Score=64.70 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=40.5
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|.+|+.. .+|+.|+.|.+.+|..|+.||+..++.++|+|+.|+.
T Consensus 13 ~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 358888754 3589999999999999999999999999999999974
No 69
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.08 E-value=0.00066 Score=87.21 Aligned_cols=127 Identities=10% Similarity=0.067 Sum_probs=75.8
Q ss_pred cccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC
Q 038397 217 LSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 217 LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~ 296 (1102)
++..|.+++--+.+ + + -+++-=.||.||+- ++-++....+....+++.++-.-.|-.+..+.++.++..
T Consensus 79 pt~iQ~~ai~~il~-g--------~-dvlv~ApTGSGKTl-~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 79 LTGYQRLWAKRIVQ-G--------K-SFTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp CCHHHHHHHHHHTT-T--------C-CEEECCSTTCCHHH-HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred CCHHHHHHHHHHHc-C--------C-CEEEEeCCCCcHHH-HHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 45778888554443 2 1 24555569999998 333343444455556999999999999999999998844
Q ss_pred cccccccCCC-CCCcCCCCccccc---cceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhcc
Q 038397 297 CIEVHALNKL-PYSKLDSRSVGIR---EGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAK 365 (1102)
Q Consensus 297 ~i~v~~l~~~-~~~~~~~~~~~~~---~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~ak 365 (1102)
.+.|..+... ...........+. -.||++|...|... ++. + .+ .++ ++|||||||...
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~-------l~~-l-~~-~~l-~~lViDEaH~l~ 209 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN-------REK-L-SQ-KRF-DFVFVDDVDAVL 209 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS-------HHH-H-HT-SCC-SEEEESCHHHHT
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH-------HHh-h-cc-cCc-CEEEEeCCCccc
Confidence 4554433211 0000000000122 34999999888532 111 1 11 233 599999999865
No 70
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.07 E-value=0.00034 Score=69.52 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=52.2
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.|+.++.-.. =|...+|||.+..+|+.||++|.+|- +..|.++. ..|..+
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~--------Vi~~~~p~~~~~~~qr~GR~gR~g~~-g~~~~~~~---~~~~~~ 141 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSL--------VINYDLPANKENYIHRIGRGGRFGRK-GVAINFVT---NEDVGA 141 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSE--------EEESSCCSSGGGGGGSSCSCC------CEEEEEEE---TTTHHH
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCE--------EEEeCCCCCHHHHHHHhcccccCCCC-ceEEEEEc---chHHHH
Confidence 6899999999999999999999874333 35688999999999999999999863 44555544 335544
Q ss_pred HHHHH
Q 038397 886 ASIVA 890 (1102)
Q Consensus 886 aS~VA 890 (1102)
...+.
T Consensus 142 ~~~~~ 146 (165)
T 1fuk_A 142 MRELE 146 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 71
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.05 E-value=0.00014 Score=65.55 Aligned_cols=47 Identities=34% Similarity=0.919 Sum_probs=42.7
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCC-Cccccch
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSD-WSCHSCK 708 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~d-W~c~sCk 708 (1102)
.|++|+..++...++.|+.|++.+|..|+.||+..++.++ |+|+.|+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 4677887777788999999999999999999999999998 9999997
No 72
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.03 E-value=7.7e-05 Score=68.70 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=42.3
Q ss_pred cccccccCcHHH--HhhhhhccccCCccccCCCCCCccc----CCCCCCccccchh
Q 038397 660 FQICEICNSEEE--RKKLLQCSCCGQLVHSGCLVPPITD----VIPSDWSCHSCKE 709 (1102)
Q Consensus 660 f~~ce~cgsed~--k~kLL~cs~cgk~~H~~cL~PP~~d----i~~~dW~c~sCke 709 (1102)
...|.+|+..+. ...|+.|+.|+..+|..|+.||+.. ++.++|+|+.|..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 457888887643 3568999999999999999999974 8999999999973
No 73
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=96.96 E-value=0.00016 Score=63.88 Aligned_cols=48 Identities=31% Similarity=0.893 Sum_probs=41.6
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCC-CCccccchh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPS-DWSCHSCKE 709 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~-dW~c~sCke 709 (1102)
.|.+|+..++...|+.|+.|.+.+|..|+.||+..++.+ +|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 355677665667899999999999999999999999998 999999974
No 74
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.92 E-value=0.001 Score=69.25 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=57.3
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
++|.+|+..|.|-+++++.||.+..-. +=|-..+|||....+|+.||++|.+|. +-.|.++. ..|.++
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~--------~Vi~~~~p~~~~~~~qr~GR~gR~g~~-g~~~~l~~---~~~~~~ 142 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVD--------LVVHYRLPDRAEAYQHRSGRTGRAGRG-GRVVLLYG---PRERRD 142 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBS--------EEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEEC---GGGHHH
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCc--------EEEECCCCcCHHHHHHHhcccCCCCCC-CeEEEEEc---hhHHHH
Confidence 689999999999999999999996433 445688999999999999999999875 33444443 246666
Q ss_pred HHHHHHHH
Q 038397 886 ASIVAKRL 893 (1102)
Q Consensus 886 aS~VAkRL 893 (1102)
...+.+.+
T Consensus 143 ~~~i~~~~ 150 (212)
T 3eaq_A 143 VEALERAV 150 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555543
No 75
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.92 E-value=0.00028 Score=61.53 Aligned_cols=46 Identities=30% Similarity=0.930 Sum_probs=40.4
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|.+|+.. ..|+.|+.|.+.+|..|+.||+..++.++|+|+.|..
T Consensus 9 ~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 9 DECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 358888764 3689999999999999999999999999999999974
No 76
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.91 E-value=0.00025 Score=60.57 Aligned_cols=46 Identities=30% Similarity=0.956 Sum_probs=40.3
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|.+|+.. ..|+.|+.|.+.+|..|+.||+..++.++|+|+.|..
T Consensus 6 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 357777764 4689999999999999999999999999999999984
No 77
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.91 E-value=0.00019 Score=76.66 Aligned_cols=48 Identities=31% Similarity=0.893 Sum_probs=39.7
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCC-CCccccchh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPS-DWSCHSCKE 709 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~-dW~c~sCke 709 (1102)
.|..|+..++...|+.|+.|++.+|..|+.||+..+|.+ +|+|+.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588899876677899999999999999999999999998 999999973
No 78
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.89 E-value=0.0002 Score=64.56 Aligned_cols=47 Identities=36% Similarity=0.825 Sum_probs=41.9
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCC-CCccccch
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPS-DWSCHSCK 708 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~-dW~c~sCk 708 (1102)
.|.+|+..++...|+.|+.|.+.+|..|+.||+..+|.+ +|+|+.|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 577788765667899999999999999999999999998 99999996
No 79
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=95.90 E-value=0.00017 Score=72.30 Aligned_cols=54 Identities=19% Similarity=0.462 Sum_probs=47.5
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQA 867 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQv 867 (1102)
+.|.+|+..|+|-+++++.||.+..-..+ |.+.+|||...-+|+.||++|.+|.
T Consensus 74 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~V--------i~~~~p~~~~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVAARGIDIPDVSHV--------FNFDMPRSGDTYLHRIGRTARAGRK 127 (170)
Confidence 58999999999999999999999754433 4578999999999999999999883
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=96.78 E-value=0.0003 Score=73.97 Aligned_cols=45 Identities=31% Similarity=0.880 Sum_probs=40.3
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.|..|+... .++.|+.|.+.+|..|+.||+..++.++|+|+.|..
T Consensus 9 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 9 WCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 488888653 489999999999999999999999999999999984
No 81
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.77 E-value=0.00028 Score=67.72 Aligned_cols=50 Identities=36% Similarity=0.819 Sum_probs=43.6
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchhhh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEKT 711 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCkek~ 711 (1102)
.|.+|+..++...|+.|+.|++.+|..|+.||+..+|.++|+|+.|....
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 46777776666789999999999999999999999999999999998533
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.76 E-value=0.00019 Score=62.16 Aligned_cols=49 Identities=33% Similarity=0.812 Sum_probs=40.0
Q ss_pred ccccccCcH--HHHhhhhhccccCCccccCCCCCCccc--C-CCCCCccccchh
Q 038397 661 QICEICNSE--EERKKLLQCSCCGQLVHSGCLVPPITD--V-IPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgse--d~k~kLL~cs~cgk~~H~~cL~PP~~d--i-~~~dW~c~sCke 709 (1102)
..|.+|+.. ++...|+.|+.|++.+|..|+.||+.. + +.++|+|+.|..
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 457777755 334679999999999999999999865 3 789999999974
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.73 E-value=0.00044 Score=59.47 Aligned_cols=46 Identities=28% Similarity=0.846 Sum_probs=40.4
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|.+|+.. ..|+.|+.|.+.+|..|+.||+..++.++|+|+.|..
T Consensus 12 ~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 12 DYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 458888764 4789999999999999999999999999999999974
No 84
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.72 E-value=0.00084 Score=72.26 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=57.5
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|.|-+++++.||.+..-. +-|.+.+|||....+|+.||++|.+|- +.-|.++. .|..+
T Consensus 260 ~~f~~~~~~vlv~T~~~~~Gid~~~~~--------~Vi~~~~~~s~~~~~Q~~GR~gR~g~~-g~~~~~~~----~~~~~ 326 (337)
T 2z0m_A 260 DAFREGEYDMLITTDVASRGLDIPLVE--------KVINFDAPQDLRTYIHRIGRTGRMGRK-GEAITFIL----NEYWL 326 (337)
T ss_dssp HHHHTTSCSEEEECHHHHTTCCCCCBS--------EEEESSCCSSHHHHHHHHTTBCGGGCC-EEEEEEES----SCHHH
T ss_pred HHHHcCCCcEEEEcCccccCCCccCCC--------EEEEecCCCCHHHhhHhcCccccCCCC-ceEEEEEe----CcHHH
Confidence 689999999999999999999997543 445678999999999999999999973 33444443 56666
Q ss_pred HHHHHHHH
Q 038397 886 ASIVAKRL 893 (1102)
Q Consensus 886 aS~VAkRL 893 (1102)
...+.++|
T Consensus 327 ~~~i~~~~ 334 (337)
T 2z0m_A 327 EKEVKKVS 334 (337)
T ss_dssp HHHHC---
T ss_pred HHHHHHHh
Confidence 66555554
No 85
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.0021 Score=64.37 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=52.2
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCC------CcHhHHHHhhcccccCCCCCCCeEEEeecCc
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELP------WSADRAIQQFGRTHRSNQASAPEYRIIFTNL 879 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElp------WsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l 879 (1102)
+.|.+|+..|+|-+++++.||.+..-.- =|.+.+| |++..-+|+.||++|.++. -+.+++..
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~--------Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~---g~~~~~~~- 145 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTI--------VVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK---GLAFNMIE- 145 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEE--------EEESSCCC--CCSCCHHHHHHHHCBC----CC---EEEEEEEC-
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCE--------EEEeCCCCCccccCCHHHHHHHhcccccCCCC---ceEEEEEc-
Confidence 6899999999999999999999975433 3558899 8999999999999998853 23332222
Q ss_pred cchhhhHHHHHHHH
Q 038397 880 GGERRFASIVAKRL 893 (1102)
Q Consensus 880 ~GErRFaS~VAkRL 893 (1102)
..|..+...+.+.|
T Consensus 146 ~~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 146 VDELPSLMKIQDHF 159 (175)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHh
Confidence 34455555555444
No 86
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.60 E-value=0.0021 Score=75.88 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=91.4
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcch--hhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGR--TIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR--~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
.|..-|.++|....+ + +- .++--.||-||+- ++..+ +++ .++||++-.-.|..|..+.|+.+
T Consensus 25 ~~r~~Q~~~i~~il~-g--------~d-~lv~apTGsGKTl~~~lp~l-----~~~-g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS-G--------RD-CLVVMPTGGGKSLCYQIPAL-----LLN-GLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp SCCTTHHHHHHHHHT-T--------CC-EEEECSCHHHHHHHHHHHHH-----HSS-SEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc-C--------CC-EEEECCCCcHHHHHHHHHHH-----HhC-CCEEEECChHHHHHHHHHHHHHc
Confidence 466889999665443 2 23 4455579999985 33322 223 35999999999999999999988
Q ss_pred CCCcccccccCCCCCC-cCCC--Ccc-ccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCC
Q 038397 294 GATCIEVHALNKLPYS-KLDS--RSV-GIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVP 369 (1102)
Q Consensus 294 G~~~i~v~~l~~~~~~-~~~~--~~~-~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~ 369 (1102)
|.... .++..... .... ..+ .-.-.||++|+-.|... ++ .+.+...-=.+||+||||......
T Consensus 89 gi~~~---~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~------~~---~~~l~~~~~~~vViDEaH~i~~~g- 155 (523)
T 1oyw_A 89 GVAAA---CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD------NF---LEHLAHWNPVLLAVDEAHCISQWG- 155 (523)
T ss_dssp TCCEE---EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST------TH---HHHHTTSCEEEEEESSGGGGCTTS-
T ss_pred CCcEE---EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh------HH---HHHHhhCCCCEEEEeCccccCcCC-
Confidence 75432 22211000 0000 000 11246999999998632 12 122322223489999999985321
Q ss_pred CCCCCchhHHHHHHHHhhhCCCccEEEEecCCC
Q 038397 370 EAGSQPTRTGEAVLELQARLPEARVVYCSATGA 402 (1102)
Q Consensus 370 ~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATga 402 (1102)
..-.+. =.....|.+.+|+.+++..|||..
T Consensus 156 -~~fr~~--~~~l~~l~~~~~~~~~i~lSAT~~ 185 (523)
T 1oyw_A 156 -HDFRPE--YAALGQLRQRFPTLPFMALTATAD 185 (523)
T ss_dssp -SCCCHH--HHGGGGHHHHCTTSCEEEEESCCC
T ss_pred -CccHHH--HHHHHHHHHhCCCCCEEEEeCCCC
Confidence 011111 112334667889999999999953
No 87
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.53 E-value=0.0022 Score=79.65 Aligned_cols=150 Identities=19% Similarity=0.142 Sum_probs=91.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|++.|.++|.-..+... .+.....++-.-||.||+-...-.|+..+..|. +++++.-...|-.+..+.++.+..
T Consensus 368 ~lt~~Q~~ai~~I~~~l~----~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~-qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMI----SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF-QTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp CCCHHHHHHHHHHHHHHH----SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS-CEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhcc----ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHHHHHHhh
Confidence 367888888665443221 122223445445999999888777888888886 499999999999999888887753
Q ss_pred C-cccccccCCCCCCcCCCCc----c-cc---ccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccc
Q 038397 296 T-CIEVHALNKLPYSKLDSRS----V-GI---REGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 296 ~-~i~v~~l~~~~~~~~~~~~----~-~~---~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
. .+.|.-+.. ....+. . .+ .-.||++|+..|...-. + .++ ++||+||+|+...
T Consensus 443 ~~gi~v~~l~G----~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~-----~--------~~l-~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 443 KFNIHVALLIG----ATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH-----F--------KNL-GLVIIDEQHRFGV 504 (780)
T ss_dssp CSSCCEEECCS----SSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC-----C--------SCC-CEEEEESCCCC--
T ss_pred hcCceEEEEeC----CCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhh-----c--------cCC-ceEEecccchhhH
Confidence 2 344333321 110000 0 11 23599999987643100 0 112 6999999999632
Q ss_pred cCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCC
Q 038397 367 LVPEAGSQPTRTGEAVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 367 ~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATg 401 (1102)
.. ...|....++.+++.+|||-
T Consensus 505 ~q-------------r~~l~~~~~~~~vL~mSATp 526 (780)
T 1gm5_A 505 KQ-------------REALMNKGKMVDTLVMSATP 526 (780)
T ss_dssp ----------------CCCCSSSSCCCEEEEESSC
T ss_pred HH-------------HHHHHHhCCCCCEEEEeCCC
Confidence 11 01234455678999999995
No 88
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=96.38 E-value=0.00053 Score=63.21 Aligned_cols=47 Identities=30% Similarity=0.808 Sum_probs=39.4
Q ss_pred ccccccCcHH--HHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEE--ERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed--~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|.+|+..+ +...|+.|+.|...+|..|+.||. +|.++|+|+.|..
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~ 74 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence 4688887653 456799999999999999999885 7889999999984
No 89
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.35 E-value=0.019 Score=66.33 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=50.7
Q ss_pred HhhhcCCcceEEEEeccccccccccccccccccc------------ceeEEEecCCCcHhHHHHhhcccccCCCC
Q 038397 805 KQLFMDGKKLVAIISEAGSAGVSLQADRRAANQK------------RRVHITLELPWSADRAIQQFGRTHRSNQA 867 (1102)
Q Consensus 805 k~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQR------------RRvHitLElpWsADkAIQqfGRTHRSNQv 867 (1102)
-+.|.+|+..|+|-++.++.||.+.. ..|-|-. .++-+.-..|.|.+..+|+.||++|.+.-
T Consensus 227 ~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 227 YPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp GGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred HHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 46899999999999999999999987 6666532 22333345999999999999999999963
No 90
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.33 E-value=0.0054 Score=70.24 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=60.7
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.||.+..-.- =|...+|||.+.-+|+.|||+|.++. .--|.|+. -..+...
T Consensus 344 ~~F~~g~~~vLvaT~v~~rGlDi~~v~~--------VI~~d~p~~~~~y~qriGR~gR~g~~-G~a~~~~~--~~~~~~~ 412 (434)
T 2db3_A 344 RDFKNGSMKVLIATSVASRGLDIKNIKH--------VINYDMPSKIDDYVHRIGRTGRVGNN-GRATSFFD--PEKDRAI 412 (434)
T ss_dssp HHHHTSSCSEEEECGGGTSSCCCTTCCE--------EEESSCCSSHHHHHHHHTTSSCTTCC-EEEEEEEC--TTTCGGG
T ss_pred HHHHcCCCcEEEEchhhhCCCCcccCCE--------EEEECCCCCHHHHHHHhcccccCCCC-CEEEEEEe--ccccHHH
Confidence 6899999999999999999999875433 35578999999999999999999873 33444443 2345666
Q ss_pred HHHHHHHHhh
Q 038397 886 ASIVAKRLES 895 (1102)
Q Consensus 886 aS~VAkRLeS 895 (1102)
+..+.+-|+.
T Consensus 413 ~~~l~~~l~~ 422 (434)
T 2db3_A 413 AADLVKILEG 422 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 91
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.26 E-value=0.012 Score=68.28 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=55.9
Q ss_pred hhhcCCcceEEEEeccccccccccccccccc------------ccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEE
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAAN------------QKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYR 873 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~N------------QRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~ 873 (1102)
+.|.+|+..|+|-+++++.||.+.. ..|-| ...++-+..+.|.|.+..+|+.||++|.+.-..=.|.
T Consensus 230 ~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~ 308 (459)
T 2z83_A 230 PKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYH 308 (459)
T ss_dssp GGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred hhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEE
Confidence 5899999999999999999999997 66766 2234444478999999999999999999865555677
Q ss_pred EeecC
Q 038397 874 IIFTN 878 (1102)
Q Consensus 874 ~l~T~ 878 (1102)
++..+
T Consensus 309 ~~~~~ 313 (459)
T 2z83_A 309 YGGAT 313 (459)
T ss_dssp ECSCC
T ss_pred EEccc
Confidence 77665
No 92
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.20 E-value=0.023 Score=68.75 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=65.3
Q ss_pred hhhcCCcceEEEEeccccccccccccccccc------------ccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEE
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAAN------------QKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYR 873 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~N------------QRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~ 873 (1102)
+.|.+|+..|+|-+++++.||.+.. ..|-+ ...|+-|...+|-|.+..||+.|||+|.+.-..=.|.
T Consensus 395 ~~F~~g~~~VLVaTdv~~rGiDi~v-~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~ 473 (618)
T 2whx_A 395 PKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 473 (618)
T ss_dssp THHHHSCCSEEEECGGGGTTCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred HhhcCCCcEEEEECcHHHcCcccCc-eEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEE
Confidence 5899999999999999999999952 23322 2236778999999999999999999999654433455
Q ss_pred EeecCccchhhhHHHHHHHH
Q 038397 874 IIFTNLGGERRFASIVAKRL 893 (1102)
Q Consensus 874 ~l~T~l~GErRFaS~VAkRL 893 (1102)
++...-.-|..++..+.+.+
T Consensus 474 l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 474 FSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp ECSCCCCCCTTCHHHHHHHH
T ss_pred EccCCchhhHHHHHHHHhHh
Confidence 55433466777776666654
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.18 E-value=0.00094 Score=63.87 Aligned_cols=48 Identities=27% Similarity=0.799 Sum_probs=40.4
Q ss_pred cccccCcH-HHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 662 ICEICNSE-EERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 662 ~ce~cgse-d~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.|.+|+.. ++...++.|+.|++.+|..|+.||+..++.++|+|+.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 35666643 3445689999999999999999999999999999999974
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=96.17 E-value=0.0013 Score=67.66 Aligned_cols=45 Identities=31% Similarity=0.919 Sum_probs=40.1
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.|..|+.. ..++.|+.|.+.+|..|+.||+..++.++|+|+.|+.
T Consensus 6 ~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 6 WCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp SCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred ccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 48888855 3489999999999999999999999999999999984
No 95
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.16 E-value=0.016 Score=69.70 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=91.7
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|..-|.++|....+. +- .++---||-||+-...-.++ +++ .++|+++-.-.|..|..+.|+.+|.
T Consensus 44 ~~rp~Q~~~i~~il~g---------~d-~lv~~pTGsGKTl~~~lpal---~~~-g~~lVisP~~~L~~q~~~~l~~~gi 109 (591)
T 2v1x_A 44 KFRPLQLETINVTMAG---------KE-VFLVMPTGGGKSLCYQLPAL---CSD-GFTLVICPLISLMEDQLMVLKQLGI 109 (591)
T ss_dssp SCCTTHHHHHHHHHTT---------CC-EEEECCTTSCTTHHHHHHHH---TSS-SEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHcC---------CC-EEEEECCCChHHHHHHHHHH---HcC-CcEEEEeCHHHHHHHHHHHHHhcCC
Confidence 4668899997655442 22 45555699999863211121 223 3699999999999999999999875
Q ss_pred CcccccccCCC-CCCcCCC--Cc---cccccceEEeehhhhhhccccccchHHHHHH-HhccCCCceEEeecchhccccC
Q 038397 296 TCIEVHALNKL-PYSKLDS--RS---VGIREGVVFLTYSSLIASSEKGRSRLQQLVQ-WCGSGYDGLVIFDECHKAKNLV 368 (1102)
Q Consensus 296 ~~i~v~~l~~~-~~~~~~~--~~---~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~-W~g~dfdgvivfDEcH~akn~~ 368 (1102)
.. .-++.- ....... .. ..-.-.||++|+-.|... .++-..++ ...-..=.+||+||||.+....
T Consensus 110 ~~---~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~-----~~~~~~l~~~~~~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 110 SA---TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKS-----KMFMSRLEKAYEARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp CE---EECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSC-----HHHHHHHHHHHHTTCEEEEEEETGGGGSTTC
T ss_pred cE---EEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhcc-----HHHHHHHHhhhhccCCcEEEEECcccccccc
Confidence 42 222211 0000000 00 011345999999888631 12222111 1111122589999999986431
Q ss_pred CCCCCCchhHHHHHHHHhhhCCCccEEEEecCC
Q 038397 369 PEAGSQPTRTGEAVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 369 ~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATg 401 (1102)
. .-.+.-. ....|.+.+|+.++|..|||.
T Consensus 182 ~--dfr~~~~--~l~~l~~~~~~~~ii~lSAT~ 210 (591)
T 2v1x_A 182 H--DFRPDYK--ALGILKRQFPNASLIGLTATA 210 (591)
T ss_dssp T--TCCGGGG--GGGHHHHHCTTSEEEEEESSC
T ss_pred c--ccHHHHH--HHHHHHHhCCCCcEEEEecCC
Confidence 0 0112211 122456788999999999996
No 96
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.09 E-value=0.0054 Score=68.39 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=92.6
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC--------------------ceEEE
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR--------------------RKALW 275 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr--------------------~~~~w 275 (1102)
.++.-|.+++-...+ + .-.++-..||.||+-...-.|++..++.. .++++
T Consensus 37 ~~~~~Q~~~i~~i~~-~---------~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKE-K---------RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp SCCHHHHHHHHHHHT-T---------CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred CCCHHHHHHHHHHcc-C---------CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 578889999764432 2 23567778999999765544555554321 46999
Q ss_pred EEcCCchhhhHHhhhhhhCCC-cccccccCC-CCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCC
Q 038397 276 ISVGSDLKFDARRDLDDVGAT-CIEVHALNK-LPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYD 353 (1102)
Q Consensus 276 ~s~s~~L~~Da~RDl~diG~~-~i~v~~l~~-~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfd 353 (1102)
+.-...|-.+..+.++.++.. .+.+..+.. ...... ...+.-...|+++|+..|...-..+.-.+ .++
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~--------~~~- 176 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ-IRDLERGCHLLVATPGRLVDMMERGKIGL--------DFC- 176 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH-HHHHTTCCSEEEECHHHHHHHHHTTSBCC--------TTC-
T ss_pred ECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH-HHHhhCCCCEEEEChHHHHHHHHcCCcCh--------hhC-
Confidence 999999999999999887642 333322211 000000 00011134699999998864321111000 112
Q ss_pred ceEEeecchhccccCCCCCCCchhHHHHHHHHhh--hCC---CccEEEEecCC
Q 038397 354 GLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQA--RLP---EARVVYCSATG 401 (1102)
Q Consensus 354 gvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~--~lP---~ARvvY~SATg 401 (1102)
.+||+||||.+.... -...+..+.. .+| ..+++.+|||-
T Consensus 177 ~~iViDEah~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~i~~SAT~ 220 (417)
T 2i4i_A 177 KYLVLDEADRMLDMG---------FEPQIRRIVEQDTMPPKGVRHTMMFSATF 220 (417)
T ss_dssp CEEEESSHHHHHHTT---------CHHHHHHHHTSSSCCCBTTBEEEEEESCC
T ss_pred cEEEEEChhHhhccC---------cHHHHHHHHHhccCCCcCCcEEEEEEEeC
Confidence 589999999976431 1223333333 233 57899999994
No 97
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.06 E-value=0.0056 Score=67.72 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=56.1
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|.|-++.+++||-+..-. +=|-..+|||.+..+|+.|||+|.++- +--|.++. ..|.++
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~--------~VI~~d~p~s~~~y~Qr~GRagR~g~~-G~~i~l~~---~~e~~~ 139 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVD--------LVVHYRMPDRAEAYQHRSGRTGRAGRG-GRVVLLYG---PRERRD 139 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCS--------EEEESSCCSSTTHHHHHHTCCC------CEEEEEEC---SSTHHH
T ss_pred HHhhcCCceEEEEechhhcCcccccee--------EEEEcCCCCCHHHHHHHccCcCcCCCC-ceEEEEeC---hHHHHH
Confidence 689999999999999999999997443 446688999999999999999999875 44444443 357777
Q ss_pred HHHHHHHH
Q 038397 886 ASIVAKRL 893 (1102)
Q Consensus 886 aS~VAkRL 893 (1102)
...+-+.+
T Consensus 140 ~~~ie~~~ 147 (300)
T 3i32_A 140 VEALERAV 147 (300)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 98
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.01 E-value=0.00064 Score=60.34 Aligned_cols=47 Identities=30% Similarity=0.808 Sum_probs=38.2
Q ss_pred ccccccCcHH--HHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEE--ERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed--~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..|.+|+..+ +...|+.|+.|+..+|..|+.||. +|.++|+|+.|..
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 3577776543 445689999999999999999884 7889999999984
No 99
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.97 E-value=0.0058 Score=67.92 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=46.7
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.||.+..-. +-|.+.+|||.+..+|+.||++|.+|- +=-|.++.. .|..+
T Consensus 324 ~~f~~g~~~vlv~T~~~~~Gidip~v~--------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~~---~~~~~ 391 (414)
T 3eiq_A 324 REFRSGSSRVLITTDLLARGIDVQQVS--------LVINYDLPTNRENYIHRIGRGGRFGRK-GVAINMVTE---EDKRT 391 (414)
T ss_dssp HHHSCC---CEEECSSCC--CCGGGCS--------CEEESSCCSSTHHHHHHSCCC--------CEEEEECS---THHHH
T ss_pred HHHHcCCCcEEEECCccccCCCccCCC--------EEEEeCCCCCHHHhhhhcCcccCCCCC-ceEEEEEcH---HHHHH
Confidence 689999999999999999999986433 346688999999999999999999874 334444432 35555
Q ss_pred HHHHHHH
Q 038397 886 ASIVAKR 892 (1102)
Q Consensus 886 aS~VAkR 892 (1102)
...+.+.
T Consensus 392 ~~~~~~~ 398 (414)
T 3eiq_A 392 LRDIETF 398 (414)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 100
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=95.95 E-value=0.0025 Score=66.26 Aligned_cols=44 Identities=34% Similarity=0.928 Sum_probs=39.4
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccch
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCK 708 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCk 708 (1102)
.|..|+... .++.|++|.+.+|..|+.||+..++.++|.|+.|.
T Consensus 4 ~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~ 47 (189)
T 2ro1_A 4 ICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCH 47 (189)
T ss_dssp CBTTTCCCS---SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTS
T ss_pred cCccCCCCC---ceeECCCCCchhccccCCCCcccCCCCCCCCcCcc
Confidence 477787553 58899999999999999999999999999999998
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=95.92 E-value=0.0011 Score=62.94 Aligned_cols=48 Identities=31% Similarity=0.849 Sum_probs=41.7
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.|.+|+...+..+++.|+.|++.+|..|+.||+..++.++|+|+.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 466777666566799999999999999999999999999999999863
No 102
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.89 E-value=0.01 Score=68.83 Aligned_cols=133 Identities=16% Similarity=0.136 Sum_probs=76.8
Q ss_pred eeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccccce
Q 038397 243 GFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGV 322 (1102)
Q Consensus 243 Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~Gv 322 (1102)
-.++--.||.||+.+..--|++.++....++|+++-.-.|-.+..+.++.+. +.. -...+..+ .....-+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~---v~~-~~~~~~~~------~t~~~~i 92 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLP---VRY-QTSAVQRE------HQGNEIV 92 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTSC---EEE-CC--------------CCCSE
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCce---EeE-EecccccC------CCCCcEE
Confidence 3455666999999986666666676555679999999999999998887221 110 00001000 0112336
Q ss_pred EEeehhhhhhccccccchHHHHHHHhccCC--CceEEeecchhccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEecC
Q 038397 323 VFLTYSSLIASSEKGRSRLQQLVQWCGSGY--DGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSAT 400 (1102)
Q Consensus 323 lF~TYs~L~~~~~~~~sRl~Ql~~W~g~df--dgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SAT 400 (1102)
.++|...|... + + +- ..+ =++||+||||..... +-.....+.-....++.++|.+|||
T Consensus 93 ~~~~~~~l~~~-------l---~-~~-~~l~~~~~iViDEaH~~~~~--------~~~~~~~~~~~~~~~~~~~il~SAT 152 (459)
T 2z83_A 93 DVMCHATLTHR-------L---M-SP-NRVPNYNLFVMDEAHFTDPA--------SIAARGYIATKVELGEAAAIFMTAT 152 (459)
T ss_dssp EEEEHHHHHHH-------H---H-SC-C-CCCCSEEEESSTTCCSHH--------HHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred EEEchHHHHHH-------h---h-cc-ccccCCcEEEEECCccCCch--------hhHHHHHHHHHhccCCccEEEEEcC
Confidence 78888776431 1 1 10 111 259999999974100 1111122222233478999999999
Q ss_pred CCCCC
Q 038397 401 GASEP 405 (1102)
Q Consensus 401 gasep 405 (1102)
-..+.
T Consensus 153 ~~~~~ 157 (459)
T 2z83_A 153 PPGTT 157 (459)
T ss_dssp CTTCC
T ss_pred CCcch
Confidence 85543
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.88 E-value=0.0035 Score=70.01 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=47.8
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQA 867 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQv 867 (1102)
+.|.+|+..|+|-+++++.||.+..- ++-|...+|||.+..+|+.||++|.+|-
T Consensus 320 ~~f~~g~~~vlv~T~~~~~Gidi~~v--------~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 320 KEFRSGASRVLISTDVWARGLDVPQV--------SLIINYDLPNNRELYIHRIGRSGRYGRK 373 (410)
T ss_dssp HHHHHTSSCEEEECGGGSSSCCCTTE--------EEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred HHHHCCCCCEEEECChhhCcCCcccC--------CEEEEECCCCCHHHHHHhcccccCCCCc
Confidence 68999999999999999999998744 3345688999999999999999999874
No 104
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.86 E-value=0.042 Score=63.17 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=62.8
Q ss_pred HhhhcCCcceEEEEecccccccccccccccccc---------cceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEe
Q 038397 805 KQLFMDGKKLVAIISEAGSAGVSLQADRRAANQ---------KRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRII 875 (1102)
Q Consensus 805 k~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQ---------RRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l 875 (1102)
-+.|.+|+.+|+|-+++++.||.+- ...+-+- ..+..|....|.+.+..+|+.||++|.++-+.=.|.+.
T Consensus 210 ~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 210 YPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp TTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 3689999999999999999999996 4333211 34678899999999999999999999985433233333
Q ss_pred ecCccchhhhHHHH--HHHHhhc
Q 038397 876 FTNLGGERRFASIV--AKRLESL 896 (1102)
Q Consensus 876 ~T~l~GErRFaS~V--AkRLeSL 896 (1102)
...-.-|..++..+ .+||+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~ 311 (431)
T 2v6i_A 289 GNVSSDNEGHVSWTEARMLLDNV 311 (431)
T ss_dssp SCCCCCCTTBHHHHHHHHHHTTC
T ss_pred CCCCCccchhHHHHHHHHHHhhc
Confidence 22222233333222 3577766
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=95.84 E-value=0.0028 Score=59.42 Aligned_cols=50 Identities=18% Similarity=0.549 Sum_probs=41.0
Q ss_pred cccccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 658 DEFQICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 658 DEf~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
+|.+.| +|+..++...|+.|+.|..-+|..|+.|+...++ +.|+|+.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcC
Confidence 345677 7877666667999999999999999998876665 5899999974
No 106
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.77 E-value=0.029 Score=69.60 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=48.4
Q ss_pred hhhc-----CCcceEEEEeccccccccccccccccc----------ccceeEEEecCCCcHhHHHHhhcccccC
Q 038397 806 QLFM-----DGKKLVAIISEAGSAGVSLQADRRAAN----------QKRRVHITLELPWSADRAIQQFGRTHRS 864 (1102)
Q Consensus 806 ~~Fm-----~G~K~VAIISeAaSTGISLhADrr~~N----------QRRRvHitLElpWsADkAIQqfGRTHRS 864 (1102)
+.|. +|+..|.|-++.+.+||-+..-+-|.| -+.++..+..-|.|.+.++|+.||++|.
T Consensus 358 ~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 358 EPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp SCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred hhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 4687 899999999999999999986665554 3445555566699999999999999998
No 107
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.75 E-value=0.0013 Score=58.30 Aligned_cols=52 Identities=23% Similarity=0.579 Sum_probs=42.7
Q ss_pred ccccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchhh
Q 038397 659 EFQICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKEK 710 (1102)
Q Consensus 659 Ef~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCkek 710 (1102)
+...|.+|+..++...|+.|+.|+..+|..|+.++....+.++|+|+.|..+
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 4456888887655556899999999999999988877677789999999853
No 108
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.56 E-value=0.044 Score=67.00 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=65.9
Q ss_pred hhhcCCcceEEEEeccccccccccccccccccc------------ceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEE
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQK------------RRVHITLELPWSADRAIQQFGRTHRSNQASAPEYR 873 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQR------------RRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~ 873 (1102)
+.|.+|+.+|+|-+++++.||.+. -..|-|-+ .|+.+...+|.|.+..+|+.||++|...-.+=-|.
T Consensus 450 ~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~ 528 (673)
T 2wv9_A 450 PKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYH 528 (673)
T ss_dssp GGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEE
T ss_pred HHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEE
Confidence 689999999999999999999998 45565522 47778889999999999999999999433333455
Q ss_pred EeecCccchhhhHHHHHHHH
Q 038397 874 IIFTNLGGERRFASIVAKRL 893 (1102)
Q Consensus 874 ~l~T~l~GErRFaS~VAkRL 893 (1102)
++...-..|..++..+.+++
T Consensus 529 l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 529 YGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECSCCCCCCTTBHHHHHHHH
T ss_pred EEecCChhHHHHHHHHHHHH
Confidence 55434456766666665543
No 109
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.26 E-value=0.024 Score=62.75 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=58.2
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCc------HhHHHHhhcccccCCCCCCCeEEEeecCc
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWS------ADRAIQQFGRTHRSNQASAPEYRIIFTNL 879 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWs------ADkAIQqfGRTHRSNQvsaP~Y~~l~T~l 879 (1102)
+.|.+|+..|+|-+++++.||.+..- ++-|.+.+||+ ....+|+.||++|.++ +-+.+++-+-
T Consensus 310 ~~f~~g~~~vlv~T~~~~~Gidip~~--------~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~---~g~~~~~~~~ 378 (412)
T 3fht_A 310 ERFREGKEKVLVTTNVCARGIDVEQV--------SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK---RGLAVNMVDS 378 (412)
T ss_dssp HHHHTTSCSEEEECGGGTSSCCCTTE--------EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC---CEEEEEEECS
T ss_pred HHHHCCCCcEEEEcCccccCCCccCC--------CEEEEECCCCCCCCCcchheeecccCcccCCCC---CceEEEEEcC
Confidence 68999999999999999999988643 23466889974 5799999999999885 3445544454
Q ss_pred cchhhhHHHHHHHH
Q 038397 880 GGERRFASIVAKRL 893 (1102)
Q Consensus 880 ~GErRFaS~VAkRL 893 (1102)
..|..+...+.+.+
T Consensus 379 ~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 379 KHSMNILNRIQEHF 392 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 55566666665554
No 110
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.15 E-value=0.0035 Score=69.09 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=0.0
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEe
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRII 875 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l 875 (1102)
+.|.+|+..|+|-+++++.|+.+..-.-+ |.+.+|||.+..+|+.||+||.+|- +--|.++
T Consensus 303 ~~f~~~~~~vlv~T~~~~~Gldi~~~~~V--------i~~~~p~s~~~~~Qr~GR~~R~g~~-g~~~~~~ 363 (394)
T 1fuu_A 303 KEFRSGSSRILISTDLLARGIDVQQVSLV--------INYDLPANKENYIHRIGRGGRFGRK-GVAINFV 363 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHCCCCcEEEECChhhcCCCcccCCEE--------EEeCCCCCHHHHHHHcCcccCCCCC-ceEEEEE
Confidence 58999999999999999999999765443 5577899999999999999999874 3334443
No 111
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.04 E-value=0.033 Score=64.30 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=60.3
Q ss_pred hhhcCCcceEEEEecccccccccccccccc-----------cccceeEEEecCCCcHhHHHHhhcccccC-CCCCCCeEE
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAA-----------NQKRRVHITLELPWSADRAIQQFGRTHRS-NQASAPEYR 873 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~-----------NQRRRvHitLElpWsADkAIQqfGRTHRS-NQvsaP~Y~ 873 (1102)
+.|.+|+..|+|-+++++.||-+.+| .|- +-.+++.|....|.+....+|+.||++|. ++ +-+.
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDipv~-~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~---~g~~ 292 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLCVE-RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR---DGDS 292 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCCCS-EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC---CCEE
T ss_pred hhhcCCCceEEEECChhheeeccCce-EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCC---CceE
Confidence 57999999999999999999999844 343 45558889999999999999999999997 44 3344
Q ss_pred Eeec--CccchhhhHHHHHHHH
Q 038397 874 IIFT--NLGGERRFASIVAKRL 893 (1102)
Q Consensus 874 ~l~T--~l~GErRFaS~VAkRL 893 (1102)
+++. .-..|..++..+.+.+
T Consensus 293 ~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 293 YYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp EEECSCCCCCCTTBHHHHHHHH
T ss_pred EEEeccCChhhhhhhhhhhHHh
Confidence 4443 2455666666666654
No 112
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.93 E-value=0.036 Score=65.71 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=59.8
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.||-+.. -++=|.+.+|||.+..+|+.||++|.++. +--+.+ ++ ..|.+|
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~-g~~i~~-~~--~~e~~~ 402 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPN--------VHEVLQIGVPSELANYIHRIGRTARSGKE-GSSVLF-IC--KDELPF 402 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTT--------CCEEEEESCCSSTTHHHHHHTTSSCTTCC-EEEEEE-EE--GGGHHH
T ss_pred HHhhcCCCeEEEEcchhhcCCCccc--------CCEEEEcCCCCCHHHhhhhccccccCCCC-ceEEEE-Ec--ccHHHH
Confidence 6899999999999999999998763 23557788999999999999999999873 222333 33 468888
Q ss_pred HHHHHHHH
Q 038397 886 ASIVAKRL 893 (1102)
Q Consensus 886 aS~VAkRL 893 (1102)
...+.+..
T Consensus 403 ~~~l~~~~ 410 (579)
T 3sqw_A 403 VRELEDAK 410 (579)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87776653
No 113
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.82 E-value=0.043 Score=63.34 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=75.7
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccc-cce
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIR-EGV 322 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~-~Gv 322 (1102)
++.++ ||-||+-..+--|++.+..+..++++++-...|-.+..+.++.++.. . -...+ ..+... .=+
T Consensus 12 lv~a~-TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~---~-~~~~~-------~~v~Tp~~l~ 79 (440)
T 1yks_A 12 VLDFH-PGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK---F-HTQAF-------SAHGSGREVI 79 (440)
T ss_dssp EECCC-TTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE---E-ESSCC-------CCCCCSSCCE
T ss_pred EEEcC-CCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE---E-ecccc-------eeccCCccce
Confidence 34444 99999998766677777767778999999999999999888755421 0 00100 001111 112
Q ss_pred EEeehhhhhhccccccchHHHHHHHhcc-CCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhh--CCCccEEEEec
Q 038397 323 VFLTYSSLIASSEKGRSRLQQLVQWCGS-GYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQAR--LPEARVVYCSA 399 (1102)
Q Consensus 323 lF~TYs~L~~~~~~~~sRl~Ql~~W~g~-dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~--lP~ARvvY~SA 399 (1102)
-+.+...+.. .+.|... .-=++||+||||.+ +. .......-++.. .++.+++.+||
T Consensus 80 ~~l~~~~l~~-----------~~~~~~~~~~l~~vViDEah~~-~~---------~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 80 DAMCHATLTY-----------RMLEPTRVVNWEVIIMDEAHFL-DP---------ASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp EEEEHHHHHH-----------HHTSSSCCCCCSEEEETTTTCC-SH---------HHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred eeecccchhH-----------hhhCcccccCccEEEEECcccc-Cc---------chHHHHHHHHHHhccCCceEEEEeC
Confidence 2333333321 1111100 11269999999997 11 111122222222 25789999999
Q ss_pred CCCCCCCccc
Q 038397 400 TGASEPRNMG 409 (1102)
Q Consensus 400 Tgasep~Nl~ 409 (1102)
|-.....+++
T Consensus 139 T~~~~~~~~~ 148 (440)
T 1yks_A 139 TPPGTSDEFP 148 (440)
T ss_dssp SCTTCCCSSC
T ss_pred CCCchhhhhh
Confidence 9877665554
No 114
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.73 E-value=0.11 Score=63.39 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=76.2
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccc-cccce
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVG-IREGV 322 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~-~~~Gv 322 (1102)
.++--.||-||+-...--|+..+.....+++.++-...|-.+..+.++.++.. . -...+. .+. ...=+
T Consensus 244 vlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~i~-~---~~~~l~-------~v~tp~~ll 312 (673)
T 2wv9_A 244 TVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPVR-Y---LTPAVQ-------REHSGNEIV 312 (673)
T ss_dssp EEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCCE-E---CCC----------CCCCSCCCE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCCee-e---eccccc-------ccCCHHHHH
Confidence 34444499999998655566666666677999999999999998888765422 0 001110 011 11223
Q ss_pred EEeehhhhhhccccccchHHHHHHHhcc-CCC--ceEEeecchhccccCCCCCCCchhHHHHHHHHhhhC--CCccEEEE
Q 038397 323 VFLTYSSLIASSEKGRSRLQQLVQWCGS-GYD--GLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARL--PEARVVYC 397 (1102)
Q Consensus 323 lF~TYs~L~~~~~~~~sRl~Ql~~W~g~-dfd--gvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~l--P~ARvvY~ 397 (1102)
-+.+...+.. + |+.. .|. ++||+||||++. .........|...+ ++.+++..
T Consensus 313 ~~l~~~~l~~-------~------l~~~~~l~~l~lvViDEaH~~~----------~~~~~~~~~l~~~~~~~~~~vl~~ 369 (673)
T 2wv9_A 313 DVMCHATLTH-------R------LMSPLRVPNYNLFVMDEAHFTD----------PASIAARGYIATRVEAGEAAAIFM 369 (673)
T ss_dssp EEEEHHHHHH-------H------HHSSSCCCCCSEEEEESTTCCC----------HHHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHhhhhHH-------H------HhcccccccceEEEEeCCcccC----------ccHHHHHHHHHHhccccCCcEEEE
Confidence 4455544421 1 1111 222 599999999971 11111122222333 57899999
Q ss_pred ecCCCCCCCccc
Q 038397 398 SATGASEPRNMG 409 (1102)
Q Consensus 398 SATgasep~Nl~ 409 (1102)
|||-..+..++.
T Consensus 370 SAT~~~~i~~~~ 381 (673)
T 2wv9_A 370 TATPPGTSDPFP 381 (673)
T ss_dssp CSSCTTCCCSSC
T ss_pred cCCCChhhhhhc
Confidence 999987765543
No 115
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.71 E-value=0.072 Score=61.25 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=70.6
Q ss_pred EeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccccceEE
Q 038397 245 FIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGVVF 324 (1102)
Q Consensus 245 ~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF 324 (1102)
++--.||-||+-...--+++.++....+++++.-...|-....+.+..+ .+.+ +. +.+. .....+.-+.+
T Consensus 6 lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~~---~v~~--~~----~~~~-~~~~~~~~~~~ 75 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGE---PIRY--MT----PAVQ-SERTGNEIVDF 75 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS---CEEE--C--------------CCCSEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCCC---eEEE--Ee----cCcc-ccCCCCceEEE
Confidence 3444499999998644455445455557999999988988877777522 1111 11 1000 00112233667
Q ss_pred eehhhhhhccccccchHHHHHHHhccCCC--ceEEeecchhccccCCCCCCCchhHHH-HHHHHhhhCCCccEEEEecCC
Q 038397 325 LTYSSLIASSEKGRSRLQQLVQWCGSGYD--GLVIFDECHKAKNLVPEAGSQPTRTGE-AVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 325 ~TYs~L~~~~~~~~sRl~Ql~~W~g~dfd--gvivfDEcH~akn~~~~~~~~~s~~g~-avl~LQ~~lP~ARvvY~SATg 401 (1102)
+|+..+.. ++++ ...|. ++||+||||... .. +..-+ ...++. .-++.++|.+|||-
T Consensus 76 ~~~~~l~~----------~l~~--~~~~~~l~~vViDEaH~~~-~~-------~~~~~~~l~~~~-~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 76 MCHSTFTM----------KLLQ--GVRVPNYNLYIMDEAHFLD-PA-------SVAARGYIETRV-SMGDAGAIFMTATP 134 (431)
T ss_dssp EEHHHHHH----------HHHH--TCCCCCCSEEEEESTTCCS-HH-------HHHHHHHHHHHH-HTTSCEEEEEESSC
T ss_pred EchHHHHH----------HHhc--CccccCCCEEEEeCCccCC-cc-------HHHHHHHHHHHh-hCCCCcEEEEeCCC
Confidence 77776632 1222 11122 699999999952 10 11111 122222 24689999999996
Q ss_pred CC
Q 038397 402 AS 403 (1102)
Q Consensus 402 as 403 (1102)
..
T Consensus 135 ~~ 136 (431)
T 2v6i_A 135 PG 136 (431)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 116
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.67 E-value=0.047 Score=64.00 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=58.5
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
+.|.+|+..|+|-+++++.||-+.. -++=|...+|||.+.-||+.||++|.++. -+.+++.. ..|.+|
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~---g~~i~~~~-~~e~~~ 453 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPN--------VHEVLQIGVPSELANYIHRIGRTARSGKE---GSSVLFIC-KDELPF 453 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTT--------CCEEEEESCCSSTTHHHHHHTTSSCTTCC---EEEEEEEE-GGGHHH
T ss_pred HHHhcCCCCEEEEcchhhcCCCccc--------CCEEEEECCCCchhhhhhhcCccccCCCC---ceEEEEEc-hhHHHH
Confidence 6899999999999999999998864 23446778999999999999999999863 33333322 468877
Q ss_pred HHHHHHH
Q 038397 886 ASIVAKR 892 (1102)
Q Consensus 886 aS~VAkR 892 (1102)
...+.+.
T Consensus 454 ~~~l~~~ 460 (563)
T 3i5x_A 454 VRELEDA 460 (563)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 117
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.43 E-value=0.24 Score=66.62 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=91.9
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc----------cCceEEEEEcCCchhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH----------GRRKALWISVGSDLKFD 285 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~----------Gr~~~~w~s~s~~L~~D 285 (1102)
.|-.-|-+++--|-+.+ .-+++.=-||-||+-..-=.|+...++ ...|+|+++-.-.|-.+
T Consensus 79 ~ln~iQs~~~~~al~~~---------~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETD---------ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp BCCHHHHHTHHHHHTCC---------CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC---------CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHH
Confidence 46677777654444433 335677779999986543346666654 34579999999999999
Q ss_pred HHhhhhhh-CCCcccccccCCCCCCcCCC-CccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchh
Q 038397 286 ARRDLDDV-GATCIEVHALNKLPYSKLDS-RSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHK 363 (1102)
Q Consensus 286 a~RDl~di-G~~~i~v~~l~~~~~~~~~~-~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~ 363 (1102)
-.++|+.. +.-.+.|--+ .|.... +...-+-.||.+|+=.|..--.++..+ .|+.. =++||+||+|.
T Consensus 150 ~~~~l~~~~~~~gi~V~~~----tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~-----~~l~~--v~~vIiDEvH~ 218 (1724)
T 4f92_B 150 MVGSFGKRLATYGITVAEL----TGDHQLCKEEISATQIIVCTPEKWDIITRKGGER-----TYTQL--VRLIILDEIHL 218 (1724)
T ss_dssp HHHHHHHHHTTTTCCEEEC----CSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTH-----HHHTT--EEEEEETTGGG
T ss_pred HHHHHHHHHhhCCCEEEEE----ECCCCCCccccCCCCEEEECHHHHHHHHcCCccc-----hhhcC--cCEEEEecchh
Confidence 99999764 3334444322 122111 111124569999986553322222111 23321 26899999996
Q ss_pred ccccCCCCCCCchhHHHHHHHH----hhhCCCccEEEEecCC
Q 038397 364 AKNLVPEAGSQPTRTGEAVLEL----QARLPEARVVYCSATG 401 (1102)
Q Consensus 364 akn~~~~~~~~~s~~g~avl~L----Q~~lP~ARvvY~SATg 401 (1102)
..+ .....-...+.+| ...-++.|+|-.|||=
T Consensus 219 l~d------~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl 254 (1724)
T 4f92_B 219 LHD------DRGPVLEALVARAIRNIEMTQEDVRLIGLSATL 254 (1724)
T ss_dssp GGS------TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC
T ss_pred cCC------ccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 642 1111111222222 1234678999999994
No 118
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.09 E-value=0.057 Score=65.30 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=79.0
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccccceE
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGVV 323 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~Gvl 323 (1102)
.++--.||-||+.+.+--|++.++....++++++-...|-.+..+.++.+. +. +.... +. .......-+.
T Consensus 189 vlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~~---v~-~~~~~-----l~-~~~tp~~~i~ 258 (618)
T 2whx_A 189 TIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLP---IR-YQTPA-----VK-SDHTGREIVD 258 (618)
T ss_dssp EEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC---EE-ECCTT-----SS-CCCCSSSCEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCCc---ee-Eeccc-----ce-eccCCCceEE
Confidence 445556999999987665666666666679999999999888888776321 11 11110 00 0112233477
Q ss_pred EeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhC--CCccEEEEecCC
Q 038397 324 FLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARL--PEARVVYCSATG 401 (1102)
Q Consensus 324 F~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~l--P~ARvvY~SATg 401 (1102)
++|+..|... ++.-..-+.=.+||+||||.+ +. ........+.+.+ ++.+++..|||-
T Consensus 259 ~~t~~~l~~~----------l~~~~~l~~~~~iViDEah~~-~~---------~~~~~~~~i~~~l~~~~~q~il~SAT~ 318 (618)
T 2whx_A 259 LMCHATFTTR----------LLSSTRVPNYNLIVMDEAHFT-DP---------CSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp EEEHHHHHHH----------HHHCSSCCCCSEEEEESTTCC-SH---------HHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred EEChHHHHHH----------HhccccccCCeEEEEECCCCC-Cc---------cHHHHHHHHHHHhcccCccEEEEECCC
Confidence 8888777531 111100011259999999997 11 2222333333444 688999999997
Q ss_pred CCCCC
Q 038397 402 ASEPR 406 (1102)
Q Consensus 402 asep~ 406 (1102)
..+..
T Consensus 319 ~~~~~ 323 (618)
T 2whx_A 319 PGSTD 323 (618)
T ss_dssp TTCCC
T ss_pred chhhh
Confidence 55433
No 119
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=94.07 E-value=0.13 Score=62.78 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=71.6
Q ss_pred ceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhh-CCCcccccccCCCCCCcCCCCcccccc
Q 038397 242 AGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDV-GATCIEVHALNKLPYSKLDSRSVGIRE 320 (1102)
Q Consensus 242 ~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~di-G~~~i~v~~l~~~~~~~~~~~~~~~~~ 320 (1102)
-..+.+. ||-||+-++.-.|++ +|. ++++++-.-.|-....+.+... |.. +.+ ..| .....-+.
T Consensus 234 ~vlv~Ap-TGSGKT~a~~l~ll~---~g~-~vLVl~PTReLA~Qia~~l~~~~g~~-vg~------~vG---~~~~~~~~ 298 (666)
T 3o8b_A 234 VAHLHAP-TGSGKSTKVPAAYAA---QGY-KVLVLNPSVAATLGFGAYMSKAHGID-PNI------RTG---VRTITTGA 298 (666)
T ss_dssp EEEEECC-TTSCTTTHHHHHHHH---TTC-CEEEEESCHHHHHHHHHHHHHHHSCC-CEE------ECS---SCEECCCC
T ss_pred eEEEEeC-CchhHHHHHHHHHHH---CCC-eEEEEcchHHHHHHHHHHHHHHhCCC-eeE------EEC---cEeccCCC
Confidence 3344454 999999777666665 354 5999999888887777665433 221 111 011 01112234
Q ss_pred ceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhCCCcc---EEEE
Q 038397 321 GVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEAR---VVYC 397 (1102)
Q Consensus 321 GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~AR---vvY~ 397 (1102)
-|+++|+-.|.....-. + .+ =.+||+||+|... .........|.+.+|.-+ ++.+
T Consensus 299 ~IlV~TPGrLl~~~~l~---l--------~~-l~~lVlDEAH~l~----------~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 299 PVTYSTYGKFLADGGCS---G--------GA-YDIIICDECHSTD----------STTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp SEEEEEHHHHHHTTSCC---T--------TS-CSEEEETTTTCCS----------HHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred CEEEECcHHHHhCCCcc---c--------Cc-ccEEEEccchhcC----------ccHHHHHHHHHHhhhhcCCceEEEE
Confidence 59999999885321100 0 11 2489999998642 223333444556666443 6788
Q ss_pred ecCCC
Q 038397 398 SATGA 402 (1102)
Q Consensus 398 SATga 402 (1102)
|||-.
T Consensus 357 SAT~~ 361 (666)
T 3o8b_A 357 TATPP 361 (666)
T ss_dssp ESSCT
T ss_pred CCCCC
Confidence 99943
No 120
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.02 E-value=0.096 Score=60.49 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=73.7
Q ss_pred EeecCCCCCcchhhH-HHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccccceE
Q 038397 245 FIGDGAGVGKGRTIA-GLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGVV 323 (1102)
Q Consensus 245 ~~gDg~GvGKGR~~A-giI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~Gvl 323 (1102)
++--.||-||+-+.. .++.+.+.+| .++++++-.-.|-.+..+.+..+. +. +-.... . .......-+.
T Consensus 23 lv~a~TGsGKT~~~~~~~l~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~g~~---v~-~~~~~~-----~-~~~~~~~~i~ 91 (451)
T 2jlq_A 23 IMDLHPGAGKTKRILPSIVREALLRR-LRTLILAPTRVVAAEMEEALRGLP---IR-YQTPAV-----K-SDHTGREIVD 91 (451)
T ss_dssp EECCCTTSSCCTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTTTSC---EE-ECCTTC-----S-CCCCSSCCEE
T ss_pred EEECCCCCCHhhHHHHHHHHHHHhcC-CcEEEECCCHHHHHHHHHHhcCce---ee-eeeccc-----c-ccCCCCceEE
Confidence 344459999999744 4444444444 569999988889888888775221 11 000100 0 0112234488
Q ss_pred EeehhhhhhccccccchHHHHHHHhcc-CCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEecCCC
Q 038397 324 FLTYSSLIASSEKGRSRLQQLVQWCGS-GYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSATGA 402 (1102)
Q Consensus 324 F~TYs~L~~~~~~~~sRl~Ql~~W~g~-dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SATga 402 (1102)
|+|...|... + . +.-. .-=++||+||||.+ +. .+..-+..+......|+.++|.+|||-.
T Consensus 92 ~~t~~~l~~~-------l---~-~~~~l~~~~~iViDEah~~-~~-------~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 152 (451)
T 2jlq_A 92 LMCHATFTTR-------L---L-SSTRVPNYNLIVMDEAHFT-DP-------CSVAARGYISTRVEMGEAAAIFMTATPP 152 (451)
T ss_dssp EEEHHHHHHH-------H---H-HCSCCCCCSEEEEETTTCC-SH-------HHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred EEChHHHHHH-------h---h-CcccccCCCEEEEeCCccC-Cc-------chHHHHHHHHHhhcCCCceEEEEccCCC
Confidence 8998776421 1 1 2111 11159999999987 11 1122222233334567899999999974
Q ss_pred C
Q 038397 403 S 403 (1102)
Q Consensus 403 s 403 (1102)
.
T Consensus 153 ~ 153 (451)
T 2jlq_A 153 G 153 (451)
T ss_dssp T
T ss_pred c
Confidence 4
No 121
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.65 E-value=0.061 Score=63.47 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=46.5
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQ 866 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQ 866 (1102)
+.|.+|+..|.|-+.|++.||.+..- |+=|...+|||.+..+|+.||++|.++
T Consensus 280 ~~f~~g~~~vlVaT~a~~~GiD~p~v--------~~VI~~~~p~s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 280 EKFQRDDLQIVVATVAFGMGINKPNV--------RFVVHFDIPRNIESYYQETGRAGRDGL 332 (523)
T ss_dssp HHHHTTSCSEEEECTTSCTTTCCTTC--------CEEEESSCCSSHHHHHHHHTTSCTTSS
T ss_pred HHHHcCCCeEEEEechhhCCCCccCc--------cEEEEECCCCCHHHHHHHhccccCCCC
Confidence 68999999999999999999987643 234557899999999999999999987
No 122
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.24 E-value=0.2 Score=67.30 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=84.9
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHhcc-CceEEEEEcCCchhhhHHhhhhhh-CC-CcccccccCCCCCCcCCCCc-c
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWHHG-RRKALWISVGSDLKFDARRDLDDV-GA-TCIEVHALNKLPYSKLDSRS-V 316 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l~G-r~~~~w~s~s~~L~~Da~RDl~di-G~-~~i~v~~l~~~~~~~~~~~~-~ 316 (1102)
+.-++++=-||-||+-..-=.|+..++++ ..|+|+++-.-.|-.+-.+||+.. |. ..+.|.-+. |..+.+. .
T Consensus 942 ~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~lt----Gd~~~~~~~ 1017 (1724)
T 4f92_B 942 DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLT----GETSTDLKL 1017 (1724)
T ss_dssp CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECC----SCHHHHHHH
T ss_pred CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEE----CCCCcchhh
Confidence 34578888899999874444578888764 457999999999999999999763 42 123332221 1110000 0
Q ss_pred ccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHh---hhC-CCc
Q 038397 317 GIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQ---ARL-PEA 392 (1102)
Q Consensus 317 ~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ---~~l-P~A 392 (1102)
.-+..||.+|+-.|..-......| .|+.. =++||+||+|....- .| ...-..+.+|. .++ ++.
T Consensus 1018 ~~~~~IiV~TPEkld~llr~~~~~-----~~l~~--v~lvViDE~H~l~d~---rg---~~le~il~rl~~i~~~~~~~~ 1084 (1724)
T 4f92_B 1018 LGKGNIIISTPEKWDILSRRWKQR-----KNVQN--INLFVVDEVHLIGGE---NG---PVLEVICSRMRYISSQIERPI 1084 (1724)
T ss_dssp HHHCSEEEECHHHHHHHHTTTTTC-----HHHHS--CSEEEECCGGGGGST---TH---HHHHHHHHHHHHHHHTTSSCC
T ss_pred cCCCCEEEECHHHHHHHHhCcccc-----cccce--eeEEEeechhhcCCC---CC---ccHHHHHHHHHHHHhhcCCCc
Confidence 123459999987764432222222 12221 269999999987531 11 11122222232 222 568
Q ss_pred cEEEEecCC
Q 038397 393 RVVYCSATG 401 (1102)
Q Consensus 393 RvvY~SATg 401 (1102)
|+|..|||-
T Consensus 1085 riI~lSATl 1093 (1724)
T 4f92_B 1085 RIVALSSSL 1093 (1724)
T ss_dssp EEEEEESCB
T ss_pred eEEEEeCCC
Confidence 999999993
No 123
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=93.20 E-value=0.23 Score=63.56 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=91.1
Q ss_pred cchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC-c
Q 038397 219 CLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT-C 297 (1102)
Q Consensus 219 ~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~-~ 297 (1102)
.-|.+++--..+ + .-+++--.||.||+- .+-.++...+....++++++-.-.|-.+..+.++.++.. .
T Consensus 59 ~iQ~~ai~~il~-g---------~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 59 AIQKMWAKRILR-K---------ESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp HHHHHHHHHHHT-T---------CCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHh-C---------CCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 557777554442 2 234555569999996 555566666655567999999999999999999988753 2
Q ss_pred c----cccccCCCCCCcCCCCc-------cccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccc
Q 038397 298 I----EVHALNKLPYSKLDSRS-------VGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 298 i----~v~~l~~~~~~~~~~~~-------~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
+ .+..+. |..+... +. .-.||++|...|...-. + +. ++ .+||+||||.+.+
T Consensus 128 i~~~~~v~~~~----Gg~~~~~~~~~~~~l~-~~~IlV~TP~~L~~~l~----~-------L~-~l-~~lViDEah~~l~ 189 (1054)
T 1gku_B 128 VGTENLIGYYH----GRIPKREKENFMQNLR-NFKIVITTTQFLSKHYR----E-------LG-HF-DFIFVDDVDAILK 189 (1054)
T ss_dssp CSGGGSEEECC----SSCCSHHHHHHHHSGG-GCSEEEEEHHHHHHCST----T-------SC-CC-SEEEESCHHHHHT
T ss_pred CCccceEEEEe----CCCChhhHHHHHhhcc-CCCEEEEcHHHHHHHHH----H-------hc-cC-CEEEEeChhhhhh
Confidence 2 222221 1111000 11 14799999988874321 1 21 22 4999999999876
Q ss_pred cCCCCCCCchhHHHHHHHHhhhC------------CCccEEEEecCCCCCCCcc
Q 038397 367 LVPEAGSQPTRTGEAVLELQARL------------PEARVVYCSATGASEPRNM 408 (1102)
Q Consensus 367 ~~~~~~~~~s~~g~avl~LQ~~l------------P~ARvvY~SATgasep~Nl 408 (1102)
. |..+..+.+.+ ++.+++..|||.... +.+
T Consensus 190 ~-----------~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~ 231 (1054)
T 1gku_B 190 A-----------SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGK 231 (1054)
T ss_dssp S-----------THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCT
T ss_pred c-----------cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhH
Confidence 2 12222222222 356789999997766 443
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.06 E-value=0.029 Score=53.20 Aligned_cols=48 Identities=31% Similarity=0.771 Sum_probs=39.3
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccch
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCK 708 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCk 708 (1102)
..|.+|+...+..+|+.|+.|++.+|..|+.++...++.+.|.|+.|+
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 357777766555668899999999999999998876778899999874
No 125
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.21 E-value=0.14 Score=61.53 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=50.6
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeec
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFT 877 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T 877 (1102)
+.|++|+..|.|-++|++.||-+..- |+=|.+.+|+|.+.-+|+.||++|.++ |-..+++-
T Consensus 311 ~~F~~g~~~VlVAT~a~~~GID~p~V--------~~VI~~~~p~s~~~y~Qr~GRaGR~G~---~g~~i~l~ 371 (591)
T 2v1x_A 311 RKWSANEIQVVVATVAFGMGIDKPDV--------RFVIHHSMSKSMENYYQESGRAGRDDM---KADCILYY 371 (591)
T ss_dssp HHHHTTSSSEEEECTTSCTTCCCSCE--------EEEEESSCCSSHHHHHHHHTTSCTTSS---CEEEEEEE
T ss_pred HHHHcCCCeEEEEechhhcCCCcccc--------cEEEEeCCCCCHHHHHHHhccCCcCCC---CceEEEEE
Confidence 68999999999999999999987532 345667899999999999999999887 44555443
No 126
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=92.13 E-value=0.086 Score=43.21 Aligned_cols=28 Identities=29% Similarity=0.650 Sum_probs=25.7
Q ss_pred ceeecCCcce-EEEeCCCcceecCCCCCC
Q 038397 16 VQVRCAGCHI-ILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 16 ~~~~C~~C~a-~l~~~pg~~~~~Cp~C~~ 43 (1102)
..+.|+.||. .|.+.+...++.|++||.
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 3567999999 999999999999999997
No 127
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.13 E-value=0.061 Score=46.78 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.2
Q ss_pred CCCCccceeecCCcceEEEeCCCcceecCCCCCCCCCCC
Q 038397 10 PPPNVGVQVRCAGCHIILTVGPGLTEFICGTCNLPQMLP 48 (1102)
Q Consensus 10 ~~~~~~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~l~ 48 (1102)
++.|..|.-.|+.||+.+.+.++ ....||+||......
T Consensus 14 ~~~~~~v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 14 PPRPATMIYLCADCGARNTIQAK-EVIRCRECGHRVMYK 51 (63)
T ss_dssp -----CCCCBCSSSCCBCCCCSS-SCCCCSSSCCCCCBC
T ss_pred CCCCCCeEEECCCCCCeeecCCC-CceECCCCCcEEEEE
Confidence 34456789999999999999975 679999999987763
No 128
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.05 E-value=0.1 Score=63.43 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=49.2
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQA 867 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQv 867 (1102)
+.|.+|+..|.|-+.++++||.+.+.+-+-+--.|.- -...|+|....+|+.||++|.++-
T Consensus 316 ~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd-~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 316 DAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD-GYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp HHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES-SSEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeC-CCCCcCCHHHHHHHhhhcCCCCCC
Confidence 5799999999999999999999988766555322221 116799999999999999998864
No 129
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=92.01 E-value=0.17 Score=62.02 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=52.3
Q ss_pred hhhcC--CcceEEEEecccccccccccccccccccc-eeEE-----EecCCCcHhHHHHhhcccccCCCCCCCeEEEeec
Q 038397 806 QLFMD--GKKLVAIISEAGSAGVSLQADRRAANQKR-RVHI-----TLELPWSADRAIQQFGRTHRSNQASAPEYRIIFT 877 (1102)
Q Consensus 806 ~~Fm~--G~K~VAIISeAaSTGISLhADrr~~NQRR-RvHi-----tLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T 877 (1102)
+.|.+ |+.+|.|-++++++||.+. -+.|-|--- |..+ .=.-|+|...++|+.||++|.++-..+-++++++
T Consensus 364 ~~F~~~~g~~~VLVATdi~e~GlDi~-v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 364 KKFNDPNDPCKILVATDAIGMGLNLS-IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp HHHHCTTSSCCEEEECGGGGSSCCCC-BSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred HHHHccCCCeEEEEeCcHHHCCcCcC-ccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 68999 8899999999999999993 333433111 1000 0023999999999999999999876677777765
Q ss_pred C
Q 038397 878 N 878 (1102)
Q Consensus 878 ~ 878 (1102)
.
T Consensus 443 ~ 443 (677)
T 3rc3_A 443 H 443 (677)
T ss_dssp T
T ss_pred c
Confidence 3
No 130
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=91.92 E-value=0.29 Score=57.96 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=34.6
Q ss_pred eeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC
Q 038397 243 GFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 243 Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~ 296 (1102)
-.++-=+||.||+- |.++- .... ..++++++-+..|.....+++..++..
T Consensus 28 ~~~~~a~TGtGKT~--~~l~~-~~~~-~~~~~~~~~t~~l~~q~~~~~~~l~~~ 77 (540)
T 2vl7_A 28 TLLLNAKPGLGKTV--FVEVL-GMQL-KKKVLIFTRTHSQLDSIYKNAKLLGLK 77 (540)
T ss_dssp EEEEECCTTSCHHH--HHHHH-HHHH-TCEEEEEESCHHHHHHHHHHHGGGTCC
T ss_pred CEEEEcCCCCcHHH--HHHHH-HHhC-CCcEEEEcCCHHHHHHHHHHHHhcCCc
Confidence 34555679999983 33322 1222 356888989999999999999987643
No 131
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.58 E-value=0.15 Score=61.91 Aligned_cols=62 Identities=21% Similarity=0.095 Sum_probs=45.1
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeE---EEecCCCcHhHHHHhhcccccCCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVH---ITLELPWSADRAIQQFGRTHRSNQA 867 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvH---itLElpWsADkAIQqfGRTHRSNQv 867 (1102)
+.|.+|+..|.|-+.++++||.+.+.+-+-+--.|.. -....|+|...++|+.||++|.++-
T Consensus 332 ~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 332 EGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp HHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred HHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 5799999999999999999999988776665322222 0115899999999999999998763
No 132
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.091 Score=67.07 Aligned_cols=68 Identities=24% Similarity=0.218 Sum_probs=52.1
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecC----CCcHhHHHHhhcccccCCCCCCCeEEEeecC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLEL----PWSADRAIQQFGRTHRSNQASAPEYRIIFTN 878 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLEl----pWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~ 878 (1102)
+.|.+|+..|+|-+++++.||.+.+..-+-|.-++ ..+ |||....+|+.||++|.+|-. +-+++++.+
T Consensus 426 ~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~k----fd~~~~rp~s~~~y~Qr~GRAGR~G~d~-~G~vi~l~~ 497 (1010)
T 2xgj_A 426 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK----WDGQQFRWVSGGEYIQMSGRAGRRGLDD-RGIVIMMID 497 (1010)
T ss_dssp HHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEE----ECSSCEEECCHHHHHHHHTTBCCTTTCS-SEEEEEEEC
T ss_pred HHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcc----cCCcCCccCCHHHHhHhhhhcccCCCCC-ceEEEEEEC
Confidence 58999999999999999999999875544443222 334 999999999999999999843 344444443
No 133
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.07 E-value=0.12 Score=60.55 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=41.3
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCC------CcHhHHHHhhcccccCCCCCCCeEEEeecCc
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELP------WSADRAIQQFGRTHRSNQASAPEYRIIFTNL 879 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElp------WsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l 879 (1102)
+.|.+|+..|+|-++++++||.+..- ++-|.+.+| +|+..-+|+.||++|.++. +-.|.++ +-
T Consensus 401 ~~f~~g~~~VLVaT~~l~~GiDip~v--------~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~-g~~i~l~--~~ 469 (508)
T 3fho_A 401 DSFRVGTSKVLVTTNVIARGIDVSQV--------NLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV-GVSINFV--HD 469 (508)
T ss_dssp HHHHSSSCCCCEECC-----CCCTTC--------CEEEC----CC-----CTHHHHHTTSCCC------CEEEEEE--CT
T ss_pred HHHHCCCCeEEEeCChhhcCCCccCC--------CEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCC-cEEEEEE--eC
Confidence 68999999999999999999998643 234557789 7899999999999998852 3333333 32
Q ss_pred cchhhhHHHHHH
Q 038397 880 GGERRFASIVAK 891 (1102)
Q Consensus 880 ~GErRFaS~VAk 891 (1102)
..+......+.+
T Consensus 470 ~~~~~~~~~i~~ 481 (508)
T 3fho_A 470 KKSWEEMNAIQE 481 (508)
T ss_dssp TTSSSSHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 334444444433
No 134
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=90.28 E-value=0.068 Score=64.28 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=29.8
Q ss_pred hhhcC-CcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeec
Q 038397 806 QLFMD-GKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFT 877 (1102)
Q Consensus 806 ~~Fm~-G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T 877 (1102)
++|.+ |+..|+|-++++++||-+..=. +=|-..+|||.+..+|+.|| +|.+.. .+.+|++
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~--------~VI~~d~p~s~~~~~Qr~GR-GR~~~g---~~~~l~~ 514 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCN--------LVILYEYVGNVIKMIQTRGR-GRARGS---KCFLLTS 514 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCS--------EEEEESCC--CCCC----------CCC---EEEEEES
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCC--------EEEEeCCCCCHHHHHHhhcc-CcCCCc---eEEEEec
Confidence 58998 9999999999999999987543 34557899999999999999 997432 3445555
No 135
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.93 E-value=0.23 Score=60.57 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=46.8
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEe-cCCCcHhHHHHhhcccccCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITL-ELPWSADRAIQQFGRTHRSNQ 866 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitL-ElpWsADkAIQqfGRTHRSNQ 866 (1102)
+.|.+|+..|.|-+.++++||.+.+.+-+-+.=.|.- -. -.|+|....+|+.||++|.++
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SSSCEECCHHHHHHHHTTBCCTTT
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeec-CCCCccCCHHHHHHHHhhcCCCCC
Confidence 6899999999999999999999987665444111111 00 169999999999999999876
No 136
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.47 E-value=0.36 Score=59.88 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=84.1
Q ss_pred ccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHh-cc-CceEEEEEcCCchhhhHHhhhhh-hC
Q 038397 218 SCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWH-HG-RRKALWISVGSDLKFDARRDLDD-VG 294 (1102)
Q Consensus 218 S~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l-~G-r~~~~w~s~s~~L~~Da~RDl~d-iG 294 (1102)
...|.++|..+...++. +++--.||.||+-++.-++++... +| ..+++.+.-...|..+..+.+.. +|
T Consensus 95 ~~~q~~~i~~~l~~~~~---------vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQI---------MVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp GGGGHHHHHHHHHHCSE---------EEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCe---------EEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence 35788888888776632 233334999999999888877654 33 34477766666666555544432 22
Q ss_pred CCcccccccCCCCCCcCCCCccccccceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchh-ccccCCCCCC
Q 038397 295 ATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHK-AKNLVPEAGS 373 (1102)
Q Consensus 295 ~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~-akn~~~~~~~ 373 (1102)
......+... .... .......-|+++|.-.|...-... .++ .-=.+|||||+|. +.+.
T Consensus 166 ~~v~~~vG~~-i~~~----~~~~~~~~I~v~T~G~l~r~l~~~--------~~l--~~~~~lIlDEah~R~ld~------ 224 (773)
T 2xau_A 166 VKLGEEVGYS-IRFE----NKTSNKTILKYMTDGMLLREAMED--------HDL--SRYSCIILDEAHERTLAT------ 224 (773)
T ss_dssp CCBTTTEEEE-ETTE----EECCTTCSEEEEEHHHHHHHHHHS--------TTC--TTEEEEEECSGGGCCHHH------
T ss_pred Cchhheecce-eccc----cccCCCCCEEEECHHHHHHHHhhC--------ccc--cCCCEEEecCccccccch------
Confidence 2111111100 0000 001123458999987765321100 011 1125999999995 3321
Q ss_pred CchhHHHHHHHHhhhCCCccEEEEecCC
Q 038397 374 QPTRTGEAVLELQARLPEARVVYCSATG 401 (1102)
Q Consensus 374 ~~s~~g~avl~LQ~~lP~ARvvY~SATg 401 (1102)
...-.....+....|+.++|.+|||-
T Consensus 225 --d~~~~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 225 --DILMGLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp --HHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred --HHHHHHHHHHHHhCCCceEEEEeccc
Confidence 11112344566677899999999996
No 137
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=88.79 E-value=0.16 Score=44.85 Aligned_cols=46 Identities=22% Similarity=0.694 Sum_probs=33.0
Q ss_pred cccccccCcHHHHhhhhhccc--cC-CccccCCCCCCcccCCCCCCccccchh
Q 038397 660 FQICEICNSEEERKKLLQCSC--CG-QLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 660 f~~ce~cgsed~k~kLL~cs~--cg-k~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
...| +|+..+. ..|+.|+. |. .-+|..|+- +...+.+.|+|+.|..
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCc
Confidence 3445 5665332 45899999 66 689999985 3445668999999974
No 138
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.14 E-value=0.094 Score=60.28 Aligned_cols=53 Identities=23% Similarity=0.454 Sum_probs=0.0
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCc------HhHHHHhhcccccCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWS------ADRAIQQFGRTHRSNQ 866 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWs------ADkAIQqfGRTHRSNQ 866 (1102)
+.|.+|+..|+|-+++++.||.+..=.-+ |...+||+ ....+|+.||++|.++
T Consensus 377 ~~f~~g~~~iLv~T~~~~~GlDip~v~~V--------I~~d~p~~~~~~~s~~~~~Qr~GRagR~g~ 435 (479)
T 3fmp_B 377 ERFREGKEKVLVTTNVCARGIDVEQVSVV--------INFDLPVDKDGNPDNETYLHRIGRTGRFGK 435 (479)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHcCCCcEEEEccccccCCccccCCEE--------EEecCCCCCccCCCHHHHHHHhcccccCCC
Confidence 58999999999999999999998644333 55778985 4689999999999875
No 139
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.97 E-value=0.74 Score=44.07 Aligned_cols=29 Identities=17% Similarity=0.595 Sum_probs=24.6
Q ss_pred cCCcceEEEeCCC----cceecCCCCCCCCCCC
Q 038397 20 CAGCHIILTVGPG----LTEFICGTCNLPQMLP 48 (1102)
Q Consensus 20 C~~C~a~l~~~pg----~~~~~Cp~C~~~~~l~ 48 (1102)
|+.||-.|.+..+ ...|.|+.|++...+.
T Consensus 7 Cp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 7 CIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred CcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 9999999988754 5589999999977664
No 140
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.18 E-value=0.74 Score=42.70 Aligned_cols=47 Identities=23% Similarity=0.705 Sum_probs=33.6
Q ss_pred ccccccccCcHHHHhhhhhccc--cC-CccccCCCCCCcccCCCCCCccccchh
Q 038397 659 EFQICEICNSEEERKKLLQCSC--CG-QLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 659 Ef~~ce~cgsed~k~kLL~cs~--cg-k~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
+...| +|+..+. ..|+.|+. |. .-+|..|+- +...+.+.|+|+.|..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccC
Confidence 44556 6665332 46999999 65 679999985 3345568999999974
No 141
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=86.08 E-value=0.27 Score=44.97 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=26.1
Q ss_pred eeecCCcceEEEeCCCcceecCCCCCCCC
Q 038397 17 QVRCAGCHIILTVGPGLTEFICGTCNLPQ 45 (1102)
Q Consensus 17 ~~~C~~C~a~l~~~pg~~~~~Cp~C~~~~ 45 (1102)
+..|+.||+.+.+.|++..+.|++|+...
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 45699999999999999999999999743
No 142
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=85.61 E-value=2.2 Score=50.53 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=32.7
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.++-=+||.||+-...-.++. ...+++.++-...|..=..+++..++.
T Consensus 25 ~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 25 VALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp EEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred EEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 455567999994432222333 345688888888998888899988853
No 143
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=85.20 E-value=2.1 Score=52.48 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=69.8
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccc-
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIR- 319 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~- 319 (1102)
|.-+++.=-||-||+- .++..+.... +.++++-.-.|-.+..+.+++.|..... + .|.. ..+-..
T Consensus 155 rk~vlv~apTGSGKT~----~al~~l~~~~-~gl~l~PtR~LA~Qi~~~l~~~g~~v~l---l----tG~~--~~iv~Tp 220 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTY----HAIQKYFSAK-SGVYCGPLKLLAHEIFEKSNAAGVPCDL---V----TGEE--RVTVQPN 220 (677)
T ss_dssp CEEEEEECCTTSSHHH----HHHHHHHHSS-SEEEEESSHHHHHHHHHHHHHTTCCEEE---E----CSSC--EECCSTT
T ss_pred CCEEEEEcCCCCCHHH----HHHHHHHhcC-CeEEEeCHHHHHHHHHHHHHhcCCcEEE---E----ECCe--eEEecCC
Confidence 3445555559999997 4455555554 3688888889999999999998653211 1 1110 001111
Q ss_pred ---cceEEeehhhhhhccccccchHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhC--CCccE
Q 038397 320 ---EGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARL--PEARV 394 (1102)
Q Consensus 320 ---~GvlF~TYs~L~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~l--P~ARv 394 (1102)
..++++|.-.+.- ...+ ++||+||||.+.+. .-|.+...+-..+ ++.++
T Consensus 221 Gr~~~il~~T~e~~~l----------------~~~v-~lvVIDEaH~l~d~---------~~g~~~~~~l~~l~~~~i~i 274 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSV----------------TTPY-EVAVIDEIQMIRDP---------ARGWAWTRALLGLCAEEVHL 274 (677)
T ss_dssp CCCCSEEEEEGGGCCS----------------SSCE-EEEEECSGGGGGCT---------TTHHHHHHHHHHCCEEEEEE
T ss_pred CcccceeEecHhHhhh----------------cccC-CEEEEecceecCCc---------cchHHHHHHHHccCccceEE
Confidence 3377777633320 1122 79999999998533 1233333333333 35678
Q ss_pred EEEecC
Q 038397 395 VYCSAT 400 (1102)
Q Consensus 395 vY~SAT 400 (1102)
+-.|||
T Consensus 275 l~~SAT 280 (677)
T 3rc3_A 275 CGEPAA 280 (677)
T ss_dssp EECGGG
T ss_pred Eeccch
Confidence 888888
No 144
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=83.46 E-value=0.69 Score=57.55 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=51.6
Q ss_pred HhhhcCCcceEEEEecccccccccccccccccccceeEEEecCC-CcHhHHHHhhcccccCCCCCCCeEEEeecC
Q 038397 805 KQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELP-WSADRAIQQFGRTHRSNQASAPEYRIIFTN 878 (1102)
Q Consensus 805 k~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElp-WsADkAIQqfGRTHRSNQvsaP~Y~~l~T~ 878 (1102)
-++|.+|+.+|+|-++.++.||.+.. -++.|....| |+....+|+.||++|.++ +-|.+++++
T Consensus 632 ~~~F~~G~~~ILVaT~vie~GIDiP~--------v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~---~g~~ill~~ 695 (780)
T 1gm5_A 632 MLEFAEGRYDILVSTTVIEVGIDVPR--------ANVMVIENPERFGLAQLHQLRGRVGRGGQ---EAYCFLVVG 695 (780)
T ss_dssp HHHHTTTSSSBCCCSSCCCSCSCCTT--------CCEEEBCSCSSSCTTHHHHHHHTSCCSST---TCEEECCCC
T ss_pred HHHHHCCCCeEEEECCCCCccccCCC--------CCEEEEeCCCCCCHHHHHHHhcccCcCCC---CCEEEEEEC
Confidence 36899999999999999999998842 2355666777 478899999999999875 467888776
No 145
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=83.30 E-value=0.51 Score=60.89 Aligned_cols=74 Identities=22% Similarity=0.130 Sum_probs=49.5
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCcc
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLG 880 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~ 880 (1102)
+.|.+|+..|+|-+++++.||-+.+-.-|-|--.+....---|-|....||+.||++|.++ ..+-+.+++.+=.
T Consensus 524 ~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~-d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 524 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL-DDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSS-CSSEEEEEEECCC
T ss_pred HHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCC-CCceEEEEEecCC
Confidence 6899999999999999999999986655543211100000003367779999999999997 4456666665433
No 146
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.66 E-value=0.24 Score=49.52 Aligned_cols=46 Identities=20% Similarity=0.621 Sum_probs=37.3
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCCcc-----c--CCCCCCccccchhh
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPPIT-----D--VIPSDWSCHSCKEK 710 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~-----d--i~~~dW~c~sCkek 710 (1102)
.|..|+... +|+-|+.|.+-+|..|+.||+. . .+.++|.|+.|..+
T Consensus 65 ~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 65 QCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred eecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 477777653 4888999999999999998874 2 47899999999843
No 147
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=82.43 E-value=1.3 Score=54.19 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=45.8
Q ss_pred hcCCcceEEEEecccccccccccccccc----------c----ccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEE
Q 038397 808 FMDGKKLVAIISEAGSAGVSLQADRRAA----------N----QKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYR 873 (1102)
Q Consensus 808 Fm~G~K~VAIISeAaSTGISLhADrr~~----------N----QRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~ 873 (1102)
|.+|.++|+|-+++++.||.+-.|. |- | -++++ .++.+|-|.+..||+.|||+| +.--. |.
T Consensus 435 r~~~~~~VLVATdVaerGIDIdV~~-VI~~Gl~~~~ViNyDydP~~gl-~~~~~P~s~~syiQRiGRtGR-g~~G~--i~ 509 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGDFDS-VIDCNTCVTQTVDFSLDPTFTI-ETTTVPQDAVSRSQRRGRTGR-GRRGI--YR 509 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCCBSE-EEECCEEEEEEEECCCSSSCEE-EEEEEECBHHHHHHHHTTBCS-SSCEE--EE
T ss_pred HHhCCCcEEEECChHHccCCCCCcE-EEecCccccccccccccccccc-ccccCcCCHHHHHHHhccCCC-CCCCE--EE
Confidence 5567779999999999999874321 22 1 12222 346789999999999999999 54433 65
Q ss_pred Eeec
Q 038397 874 IIFT 877 (1102)
Q Consensus 874 ~l~T 877 (1102)
|+..
T Consensus 510 lvt~ 513 (666)
T 3o8b_A 510 FVTP 513 (666)
T ss_dssp ESCC
T ss_pred EEec
Confidence 5543
No 148
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=82.07 E-value=0.8 Score=44.41 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.8
Q ss_pred ecCCcceEEEeC----CCcceecCCCCCCCCCCC
Q 038397 19 RCAGCHIILTVG----PGLTEFICGTCNLPQMLP 48 (1102)
Q Consensus 19 ~C~~C~a~l~~~----pg~~~~~Cp~C~~~~~l~ 48 (1102)
-|+.||-.|.+. ++...|.|+.|++...+.
T Consensus 6 FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 6 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp BCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred cccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 399999999888 567899999999977654
No 149
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=81.21 E-value=0.2 Score=42.79 Aligned_cols=45 Identities=22% Similarity=0.738 Sum_probs=32.1
Q ss_pred ccccccCcHHHHhhhhhccc--cC-CccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSC--CG-QLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~--cg-k~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.-| +|+..+. ..|+.|++ |. .-+|..|+. +...+.+.|+|+.|..
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345 5654332 45889999 55 679999986 4455678999999973
No 150
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=81.17 E-value=0.5 Score=46.66 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=26.9
Q ss_pred cceee-cCCcceEEEeCCC----cceecCCCCCCCCCCCC
Q 038397 15 GVQVR-CAGCHIILTVGPG----LTEFICGTCNLPQMLPP 49 (1102)
Q Consensus 15 ~~~~~-C~~C~a~l~~~pg----~~~~~Cp~C~~~~~l~p 49 (1102)
.+.++ |+.||-.|....+ ...|.|+.|++...+..
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS 60 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC
Confidence 34445 9999999988754 56899999999876643
No 151
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=80.86 E-value=1.9 Score=52.53 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=44.0
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecC-----CCcHhHHHHhhcccccCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLEL-----PWSADRAIQQFGRTHRSN 865 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLEl-----pWsADkAIQqfGRTHRSN 865 (1102)
+.|.+|+..|+|-+++++.|+-+..- ++-|..+. |||...-||+.||++|.+
T Consensus 483 ~~f~~g~~~VLvaT~~l~~GlDip~v--------~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 483 RDLRLGHYDCLVGINLLREGLDIPEV--------SLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp HHHHTTSCSEEEESCCCCTTCCCTTE--------EEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred HHhhcCCceEEEccChhhcCccCCCC--------CEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 57999999999999999999998732 34455565 999999999999999974
No 152
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=80.54 E-value=0.48 Score=45.19 Aligned_cols=42 Identities=26% Similarity=0.584 Sum_probs=33.5
Q ss_pred cccccCcHHHHhhhhhcc--ccCCccccCCCCCCcccCCCCCCccccch
Q 038397 662 ICEICNSEEERKKLLQCS--CCGQLVHSGCLVPPITDVIPSDWSCHSCK 708 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs--~cgk~~H~~cL~PP~~di~~~dW~c~sCk 708 (1102)
.|..|+.. ..|+.|+ .|.+.+|..|+. +..++.++|+|+.|.
T Consensus 17 ~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 17 YCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 36666632 4588999 799999999997 667888999999764
No 153
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=79.52 E-value=1.3 Score=56.48 Aligned_cols=70 Identities=21% Similarity=0.174 Sum_probs=49.8
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEE-EecCCCcHhHHHHhhcccccCCCCCCCeEEEeec
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHI-TLELPWSADRAIQQFGRTHRSNQASAPEYRIIFT 877 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHi-tLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T 877 (1102)
+.|.+|+.+|+|-+++++.||.+.+ +.+.-..-.-|- ..-.|.|....+|+.||++|.++- .+-++++.+
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~ 489 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD-STGTVIVMA 489 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC-SSEEEEEEC
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC-cceEEEEec
Confidence 5799999999999999999999987 444221100000 011255999999999999999873 455566555
No 154
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=79.20 E-value=0.44 Score=44.15 Aligned_cols=47 Identities=26% Similarity=0.667 Sum_probs=32.7
Q ss_pred ccccccccCcHHHHhhhhhccccC---CccccCCCCCCcccCCCCCCcccc-chh
Q 038397 659 EFQICEICNSEEERKKLLQCSCCG---QLVHSGCLVPPITDVIPSDWSCHS-CKE 709 (1102)
Q Consensus 659 Ef~~ce~cgsed~k~kLL~cs~cg---k~~H~~cL~PP~~di~~~dW~c~s-Cke 709 (1102)
+...| +|+..+. ..|+.||.|+ .-+|..|+- +...+.+.|+|+. |..
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34456 5664322 2588999977 789999985 3334568999999 973
No 155
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.83 E-value=1.3 Score=38.47 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCCccceeecCCcceEE-EeCCCcceecCCCCCCCCCC
Q 038397 11 PPNVGVQVRCAGCHIIL-TVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 11 ~~~~~~~~~C~~C~a~l-~~~pg~~~~~Cp~C~~~~~l 47 (1102)
|-.-++.|+|++|+.+- .|.+..+...|..||..+.-
T Consensus 9 PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 9 PRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp CSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 44588999999999765 89999999999999975443
No 156
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=78.77 E-value=2.2 Score=51.94 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=43.2
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecC-----CCcHhHHHHhhcccccC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLEL-----PWSADRAIQQFGRTHRS 864 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLEl-----pWsADkAIQqfGRTHRS 864 (1102)
+.|.+|+..|+|-++.++.|+-+..- ++-|..+. |+|.+.-||+.||++|.
T Consensus 489 ~~f~~g~~~VLVaT~~l~~GlDip~v--------~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 489 RDLRLGKYDVLVGINLLREGLDIPEV--------SLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp HHHHHTSCSEEEESCCCSTTCCCTTE--------EEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred HHHhcCCeEEEEecchhhCCcccCCC--------CEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 57999999999999999999988632 34455565 99999999999999996
No 157
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=78.43 E-value=2.2 Score=54.69 Aligned_cols=87 Identities=21% Similarity=0.096 Sum_probs=56.8
Q ss_pred hhhcCCcceEEEE----eccccccccccc-ccccccc---cceeEEEecC------------------------------
Q 038397 806 QLFMDGKKLVAII----SEAGSAGVSLQA-DRRAANQ---KRRVHITLEL------------------------------ 847 (1102)
Q Consensus 806 ~~Fm~G~K~VAII----SeAaSTGISLhA-Drr~~NQ---RRRvHitLEl------------------------------ 847 (1102)
+.|.+|+.+|+|- ++.++.||.+.. -+-|-|- |.++.+.+|+
T Consensus 313 ~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (1054)
T 1gku_B 313 EKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERH 392 (1054)
T ss_dssp HHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSC
T ss_pred HHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5799999999999 899999999887 3444431 2222221100
Q ss_pred ------------------------------CCcHhHHHHhhcccccCCCCC-CCeEEEeecCccchhhhHHHHHHHHhh
Q 038397 848 ------------------------------PWSADRAIQQFGRTHRSNQAS-APEYRIIFTNLGGERRFASIVAKRLES 895 (1102)
Q Consensus 848 ------------------------------pWsADkAIQqfGRTHRSNQvs-aP~Y~~l~T~l~GErRFaS~VAkRLeS 895 (1102)
..|++.-||+.|||+|.+.-. ..-+.++..+ |.++...+.++|..
T Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~---d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 393 IDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED---DSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS---CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec---CHHHHHHHHHHHhh
Confidence 159999999999999975442 3456676655 77788888888876
No 158
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=78.05 E-value=0.75 Score=39.43 Aligned_cols=36 Identities=25% Similarity=0.584 Sum_probs=31.6
Q ss_pred eeecCC--cceEE----EeCCCcceecCCCCCCCCCCCCCCC
Q 038397 17 QVRCAG--CHIIL----TVGPGLTEFICGTCNLPQMLPPELM 52 (1102)
Q Consensus 17 ~~~C~~--C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~~ 52 (1102)
-+||.. |+|.| .|..+-..+.|+.|+..+.+|++-+
T Consensus 9 pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 9 PVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp CCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCS
T ss_pred CcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHh
Confidence 379988 99999 7888888999999999999988873
No 159
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=77.19 E-value=0.69 Score=37.90 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=20.6
Q ss_pred ecCCcceEEEeCC--CcceecCCCCCCCCCC
Q 038397 19 RCAGCHIILTVGP--GLTEFICGTCNLPQML 47 (1102)
Q Consensus 19 ~C~~C~a~l~~~p--g~~~~~Cp~C~~~~~l 47 (1102)
+|..||.++...- =+-+..|||||+..-.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 6999998874332 2345689999997655
No 160
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=75.43 E-value=1.7 Score=38.48 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=26.3
Q ss_pred ccceeecCCcceEEEeCCCcceecCCCCCCCCCC
Q 038397 14 VGVQVRCAGCHIILTVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 14 ~~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~l 47 (1102)
..++-.|+.||..++..++ ....||.||.....
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~-d~irCp~CG~RILy 57 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRT-DAVRCKDCGHRILL 57 (70)
T ss_dssp CCCCEECSSSCCEECCCTT-STTCCSSSCCCCCB
T ss_pred ceEEEECCCCCCcceeCCC-CCccCCCCCceEeE
Confidence 5678889999999888755 44589999986655
No 161
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=74.74 E-value=1.2 Score=42.77 Aligned_cols=29 Identities=17% Similarity=0.709 Sum_probs=22.5
Q ss_pred cceeecCCcceEEEeCCCccee-cCCCCCCCC
Q 038397 15 GVQVRCAGCHIILTVGPGLTEF-ICGTCNLPQ 45 (1102)
Q Consensus 15 ~~~~~C~~C~a~l~~~pg~~~~-~Cp~C~~~~ 45 (1102)
.+..+|.+||.++.... ..+ .||.||.++
T Consensus 71 p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNA--LDYGVCEKCHSKN 100 (119)
T ss_dssp CCEEECSSSSCEECSCC--STTCCCSSSSSCC
T ss_pred cceEEcCCCCCEEeCCC--CCCCcCccccCCC
Confidence 45788999999998742 346 899999753
No 162
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.92 E-value=12 Score=39.75 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=16.4
Q ss_pred hHHHHHHHhccCCCceEEeecchhccc
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
++..+++.. -.++|++||+|....
T Consensus 121 ~~~~~~~~~---~~~vl~iDEid~l~~ 144 (309)
T 3syl_A 121 KTKEVLKRA---MGGVLFIDEAYYLYR 144 (309)
T ss_dssp HHHHHHHHH---TTSEEEEETGGGSCC
T ss_pred HHHHHHHhc---CCCEEEEEChhhhcc
Confidence 344455544 247999999998763
No 163
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=73.76 E-value=1.3 Score=45.68 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCC----ccceeecCCcce---EEEeCCCcceecCCCCCCCC
Q 038397 1 MTQPPVPPPPPPN----VGVQVRCAGCHI---ILTVGPGLTEFICGTCNLPQ 45 (1102)
Q Consensus 1 ~~~~~~~~~~~~~----~~~~~~C~~C~a---~l~~~pg~~~~~Cp~C~~~~ 45 (1102)
|+..++.++.|.. -.+.+.|+.||. .+..-+..-+..|..||.-.
T Consensus 1 ~~~~~~~~~~~~~~~~~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp ------------CCSSCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred CCCCCCCCCCccccccccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 5555555543332 456678999998 58888899999999999743
No 164
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=73.56 E-value=1.3 Score=43.94 Aligned_cols=31 Identities=13% Similarity=0.444 Sum_probs=23.3
Q ss_pred cceeecCCcceEEEeCC-----------Cc--------ceecCCCCCCCC
Q 038397 15 GVQVRCAGCHIILTVGP-----------GL--------TEFICGTCNLPQ 45 (1102)
Q Consensus 15 ~~~~~C~~C~a~l~~~p-----------g~--------~~~~Cp~C~~~~ 45 (1102)
....+|.+||.+..+.. -. ..+.||.||-++
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 45788999999998744 21 168899999754
No 165
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=73.13 E-value=1.5 Score=38.88 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=25.1
Q ss_pred eecCCcceEEEeCCCcceecCCCCCCCC
Q 038397 18 VRCAGCHIILTVGPGLTEFICGTCNLPQ 45 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg~~~~~Cp~C~~~~ 45 (1102)
+.|+.|+..|.+...-.++.|+.||..-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 5799999999999999999999998643
No 166
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.85 E-value=2.6 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.506 Sum_probs=29.4
Q ss_pred CCCccceeecCCcceEE-EeCCCcceecCCCCCCCCCC
Q 038397 11 PPNVGVQVRCAGCHIIL-TVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 11 ~~~~~~~~~C~~C~a~l-~~~pg~~~~~Cp~C~~~~~l 47 (1102)
|-.-++.|+|++|+.+- .|.+..|...|..||..+.-
T Consensus 30 PnS~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 30 PNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp ---CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred CCCcEeEEECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 33477899999999765 89999999999999975443
No 167
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=72.82 E-value=1.9 Score=39.21 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=31.0
Q ss_pred CCCCccceeecCCcceEE-EeCCCcceecCCCCCCCCCC
Q 038397 10 PPPNVGVQVRCAGCHIIL-TVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 10 ~~~~~~~~~~C~~C~a~l-~~~pg~~~~~Cp~C~~~~~l 47 (1102)
.|-.-++.|+|++|+.+- .|.+..|...|..||..+.-
T Consensus 25 ~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 25 APNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp CCSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred CCCCcEEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 344578999999998765 89999999999999975443
No 168
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.76 E-value=0.89 Score=39.91 Aligned_cols=51 Identities=27% Similarity=0.707 Sum_probs=35.6
Q ss_pred cccccccccCcHHHH-hhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 658 DEFQICEICNSEEER-KKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 658 DEf~~ce~cgsed~k-~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
++...| +|+...+. ..|+.|+.|..=+|..|+--.......+.|.|+.|..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 344566 57765332 3588999999999999985443333457899999974
No 169
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=72.56 E-value=1.4 Score=38.88 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.5
Q ss_pred eecCCcceEEEeCCCcceecCCCCCCCCC
Q 038397 18 VRCAGCHIILTVGPGLTEFICGTCNLPQM 46 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~ 46 (1102)
+.|+-|+..|.+..+-.+|.|+.||..--
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 57999999999999999999999986433
No 170
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=72.44 E-value=2.3 Score=38.74 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=30.8
Q ss_pred CCCccceeecCCcceEE-EeCCCcceecCCCCCCCCCC
Q 038397 11 PPNVGVQVRCAGCHIIL-TVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 11 ~~~~~~~~~C~~C~a~l-~~~pg~~~~~Cp~C~~~~~l 47 (1102)
|-.-++.|+|++|+.+- .|.+..+...|..||..+.-
T Consensus 28 PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 28 PRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp CCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 44578999999999765 89999999999999975443
No 171
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=71.94 E-value=1.4 Score=38.81 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.9
Q ss_pred eecCCcceEEEeCCCcceecCCCCCCCCCC
Q 038397 18 VRCAGCHIILTVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~l 47 (1102)
+.|+-|+..|.+..+-.+|.|+.||..--|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 579999999999999999999999864333
No 172
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=71.56 E-value=1.1 Score=39.83 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.1
Q ss_pred eeecCCcceEEEeCCCcceecCCCCCCCCCC
Q 038397 17 QVRCAGCHIILTVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 17 ~~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~l 47 (1102)
-++|+ ||..+.+..|..--.|| ||....+
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 47999 99999999999999999 9986655
No 173
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=71.38 E-value=1.5 Score=38.61 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=25.5
Q ss_pred eecCCcceEEEeCCCcceecCCCCCCCCC
Q 038397 18 VRCAGCHIILTVGPGLTEFICGTCNLPQM 46 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~ 46 (1102)
+.|+-|+..|.+...-.+|.|+.||..--
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 57999999999999999999999986433
No 174
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.72 E-value=1.2 Score=36.90 Aligned_cols=25 Identities=20% Similarity=0.566 Sum_probs=21.6
Q ss_pred cCCcceEEEeCCCcceecCCCCCCC
Q 038397 20 CAGCHIILTVGPGLTEFICGTCNLP 44 (1102)
Q Consensus 20 C~~C~a~l~~~pg~~~~~Cp~C~~~ 44 (1102)
|+.||+.+-..+.-..+.|+.||..
T Consensus 22 CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 22 CPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CSSSCSSCEEEECSSEEECSSSCCE
T ss_pred CCCCCCceEEecCCCeEECCCCCCE
Confidence 9999997766677799999999974
No 175
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=70.11 E-value=2.2 Score=37.42 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=28.7
Q ss_pred ccceeecCCcceEE-EeCCCcceecCCCCCCCCCC
Q 038397 14 VGVQVRCAGCHIIL-TVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 14 ~~~~~~C~~C~a~l-~~~pg~~~~~Cp~C~~~~~l 47 (1102)
-++.|+|++|+.+- .|.+..+...|..||..+.-
T Consensus 4 ~Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 4 RFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp CEEEEECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred eeEEEECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 36789999999765 89999999999999975443
No 176
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=69.46 E-value=0.61 Score=39.73 Aligned_cols=45 Identities=22% Similarity=0.715 Sum_probs=31.4
Q ss_pred ccccccCcHHHHhhhhhccc--cC-CccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSC--CG-QLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~--cg-k~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.-| +|+..+. ..|+.|+. |. .-+|..|+. +...+.+.|+|+.|..
T Consensus 10 ~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 334 4554322 35889999 66 689999985 3445668999999974
No 177
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=69.40 E-value=2 Score=53.29 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=28.5
Q ss_pred eeecCCcceEE----EeCCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIIL----TVGPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
-+||..|+|.+ .|-.| ..+.|+.|+..+.+|++-
T Consensus 85 p~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~~y 122 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEEF 122 (751)
T ss_dssp CCBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCGGG
T ss_pred CCcccCccCEeCCceEEecC-CEEEcccccCCCCCCHHH
Confidence 38999999998 56566 799999999988887665
No 178
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.88 E-value=28 Score=37.94 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=26.4
Q ss_pred eeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCch-hhhHHhh
Q 038397 243 GFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDL-KFDARRD 289 (1102)
Q Consensus 243 Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L-~~Da~RD 289 (1102)
-+++|. .|+||+..+-.+..+....+....+|++.+... ..+..+.
T Consensus 47 ~li~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 47 ATLLGR-PGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp EEEECC-TTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred EEEECC-CCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 445565 999999988665544322213457888755432 2344444
No 179
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=67.88 E-value=2.1 Score=53.52 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=31.1
Q ss_pred eeecCCcceEE----EeCCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIIL----TVGPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
-+||..|+|.+ .+-.|-..+.|+.|+..+.+|++-
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~~y 150 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQM 150 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCGGG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCchhh
Confidence 48999999999 788888999999999988887765
No 180
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=67.30 E-value=7.8 Score=46.74 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCcccchhhHHHHHHhhccccCCCCCcceeEeecC-CCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhh
Q 038397 215 KSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDG-AGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 215 g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg-~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
..|.+.|.+||..|..+. ++.+=-| .|.||+++++.+|+.-..+|.+ .+-.+-|+.=.-....=|.+.
T Consensus 188 ~~LN~~Q~~AV~~al~~~----------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~-ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQK----------ELAIIHGPPGTGKTTTVVEIILQAVKQGLK-VLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCS----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC----------CceEEECCCCCCHHHHHHHHHHHHHhCCCe-EEEEcCchHHHHHHHHHHHhc
Confidence 358899999999887543 2334344 9999999999999999998864 666666654333333334444
Q ss_pred CCC
Q 038397 294 GAT 296 (1102)
Q Consensus 294 G~~ 296 (1102)
|..
T Consensus 257 ~~~ 259 (646)
T 4b3f_X 257 KQR 259 (646)
T ss_dssp TCC
T ss_pred CCc
Confidence 443
No 181
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.29 E-value=12 Score=40.89 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=17.9
Q ss_pred HHHHHHHhccCCCceEEeecchhccc
Q 038397 341 LQQLVQWCGSGYDGLVIFDECHKAKN 366 (1102)
Q Consensus 341 l~Ql~~W~g~dfdgvivfDEcH~akn 366 (1102)
++++.+++... ..+||+||+|.+..
T Consensus 123 ~~~l~~~l~~~-~~vlilDEi~~l~~ 147 (384)
T 2qby_B 123 IDKIKNGTRNI-RAIIYLDEVDTLVK 147 (384)
T ss_dssp HHHHHHHHSSS-CEEEEEETTHHHHH
T ss_pred HHHHHHHhccC-CCEEEEECHHHhcc
Confidence 55666777542 33999999999863
No 182
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=66.51 E-value=2.1 Score=37.57 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=25.8
Q ss_pred eecCCcceEEEeCCCcceecCCCCCCCCCC
Q 038397 18 VRCAGCHIILTVGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~l 47 (1102)
+.|+-|+..|.+...-.++.|+.|+..--|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccC
Confidence 579999999999998899999999864333
No 183
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=65.58 E-value=2.7 Score=52.26 Aligned_cols=35 Identities=26% Similarity=0.615 Sum_probs=30.2
Q ss_pred eeecCCcceEE----EeCCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIIL----TVGPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
-+||..|+|.+ .|-.|-..+.|+.|+..+.+|++-
T Consensus 94 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y 132 (766)
T 3eh2_A 94 PLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY 132 (766)
T ss_dssp CCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTT
T ss_pred CCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHH
Confidence 48999999998 566777899999999998887775
No 184
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=65.34 E-value=0.87 Score=39.17 Aligned_cols=45 Identities=22% Similarity=0.609 Sum_probs=31.0
Q ss_pred ccccccCcHHHHhhhhhccccC---CccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCG---QLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cg---k~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.-| +|+..+. ..|+.|+.|+ .-+|..|+.- ...+.+.|+|+.|..
T Consensus 12 ~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVSL--TYKPKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGTC--SSCCSSCCCCHHHHT
T ss_pred cEE-ECCCCCC-CCeeeeeCCCCCcccEecccCCc--CcCCCCCEECcCccc
Confidence 344 5554322 3588999954 8899999853 334568999999974
No 185
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=64.05 E-value=4.1 Score=35.42 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=26.3
Q ss_pred cceecCCCccceeeccCCCccccCCCCCccccc
Q 038397 94 KIQLPCANCKAILNVPHGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~v 126 (1102)
.+.-.|+.||+...+..+ ....||.||--+..
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK-EVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS-SCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecCCC-CceECCCCCcEEEE
Confidence 345899999999998853 56899999998765
No 186
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=63.66 E-value=2.7 Score=52.20 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=30.7
Q ss_pred eeecCCcceEE----EeCCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIIL----TVGPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
-+||..|+|.+ .|-.|-..+.|+.|+..+.+|++-
T Consensus 98 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y 136 (770)
T 3efo_B 98 PVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFY 136 (770)
T ss_dssp SCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGG
T ss_pred CCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHh
Confidence 47999999998 677778899999999999887775
No 187
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=63.39 E-value=2.3 Score=48.00 Aligned_cols=44 Identities=14% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCC----ccceeecCCcce---EEEeCCCcceecCCCCCCC
Q 038397 1 MTQPPVPPPPPPN----VGVQVRCAGCHI---ILTVGPGLTEFICGTCNLP 44 (1102)
Q Consensus 1 ~~~~~~~~~~~~~----~~~~~~C~~C~a---~l~~~pg~~~~~Cp~C~~~ 44 (1102)
|+-+++.++.|++ -.+.+.|+.||. .|.+.+...+..|..||.-
T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp ---------------------CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CCCcccCCCCccccCcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 4444444443322 355678999995 7888889999999999963
No 188
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=63.27 E-value=2.9 Score=52.96 Aligned_cols=35 Identities=26% Similarity=0.544 Sum_probs=31.2
Q ss_pred eeecCCcceEE----EeCCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIIL----TVGPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
-+||..|++.+ .+-.+-..+.|+.|+..+.+|++-
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~~Y 266 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQM 266 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCchhh
Confidence 48999999999 788888999999999988887765
No 189
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=63.12 E-value=3.2 Score=35.29 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=24.4
Q ss_pred eecCCcce-EEEeCCCcceecCCCCCCCC
Q 038397 18 VRCAGCHI-ILTVGPGLTEFICGTCNLPQ 45 (1102)
Q Consensus 18 ~~C~~C~a-~l~~~pg~~~~~Cp~C~~~~ 45 (1102)
+.|+.||. .|.+.+...++.|..||...
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 37999987 78999999999999999754
No 190
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=62.08 E-value=3.9 Score=33.59 Aligned_cols=30 Identities=20% Similarity=0.528 Sum_probs=22.7
Q ss_pred ecCCCccceeeccCC--CccccCCCCCccccc
Q 038397 97 LPCANCKAILNVPHG--LVRFSCPQCAVELAV 126 (1102)
Q Consensus 97 ~~C~~C~A~~~vp~~--~~~f~Cp~C~~~L~v 126 (1102)
-.|.+||..++-.+= +..-.||+||.-++.
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 479999998876543 345699999998766
No 191
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.06 E-value=1.8 Score=37.91 Aligned_cols=47 Identities=21% Similarity=0.690 Sum_probs=33.5
Q ss_pred ccccccCcHHHHhhhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 661 QICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
..| +|+..++...|+.|+.|..-+|..|+......+ .+.|.|+.|..
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~ 66 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 66 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHT
T ss_pred eEe-ECCCcCCCCCEEECCCCCccccccccCcCcccC-CCcEECCCCCC
Confidence 445 566544444588999999999999985544333 47899999974
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=61.85 E-value=13 Score=41.78 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=40.0
Q ss_pred hHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHH--HHHHHHhhh--CCCccEEEEecCCCCCCCccchhhhcc
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTG--EAVLELQAR--LPEARVVYCSATGASEPRNMGYMVRLG 415 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g--~avl~LQ~~--lP~ARvvY~SATgasep~Nl~ym~RLG 415 (1102)
.+.++++.+...-.++|++||+|.+......+.......- .....|... .+..+|+...+|-..+--+-+...|+.
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~ 274 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFI 274 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcc
Confidence 3455555554433479999999998543221111111111 111111111 135678887777543333345667764
Q ss_pred ccCCCCCCCCHHHHHH
Q 038397 416 LWGAGTCFKDFQIFLG 431 (1102)
Q Consensus 416 LWg~gt~f~~~~~f~~ 431 (1102)
.. --.+.++.++...
T Consensus 275 ~~-i~i~~p~~~~r~~ 289 (389)
T 3vfd_A 275 KR-VYVSLPNEETRLL 289 (389)
T ss_dssp EE-EECCCCCHHHHHH
T ss_pred eE-EEcCCcCHHHHHH
Confidence 21 0123456655544
No 193
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=60.96 E-value=9.6 Score=43.90 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=44.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCc
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSD 281 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~ 281 (1102)
.|++.|.++|.+....-. ++.+ -+++--|+|.||++.+..+|..-...|.++.+.++-++.
T Consensus 25 ~Ln~~Q~~av~~~~~~i~----~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~ 85 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIK----EKKH-HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHA 85 (459)
T ss_dssp CCCHHHHHHHHHHHHHHH----SSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHH
T ss_pred cCCHHHHHHHHHHHHHHh----cCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHH
Confidence 588999999988765421 1222 466666799999999988887777777766777766654
No 194
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=60.95 E-value=0.91 Score=43.31 Aligned_cols=36 Identities=33% Similarity=0.826 Sum_probs=28.9
Q ss_pred hhhhhccccCCccccCCCCCCcc---cCCCCCCccccch
Q 038397 673 KKLLQCSCCGQLVHSGCLVPPIT---DVIPSDWSCHSCK 708 (1102)
Q Consensus 673 ~kLL~cs~cgk~~H~~cL~PP~~---di~~~dW~c~sCk 708 (1102)
++|+.|+.|++.+|..|+.++.. .++..+|.|+.|+
T Consensus 21 ~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 21 EELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 35889999999999999987632 3567799998874
No 195
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=60.54 E-value=23 Score=33.78 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=18.6
Q ss_pred chHHHHHHHhccCC-CceEEeecchhcccc
Q 038397 339 SRLQQLVQWCGSGY-DGLVIFDECHKAKNL 367 (1102)
Q Consensus 339 sRl~Ql~~W~g~df-dgvivfDEcH~akn~ 367 (1102)
..++++++.+...- ..+||+||+|.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (195)
T 1jbk_A 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGA 130 (195)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence 34566666554322 348999999998644
No 196
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=59.60 E-value=4.7 Score=38.54 Aligned_cols=29 Identities=21% Similarity=0.665 Sum_probs=23.4
Q ss_pred cceecCCCccceeeccCCCccc-cCCCCCccc
Q 038397 94 KIQLPCANCKAILNVPHGLVRF-SCPQCAVEL 124 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~~f-~Cp~C~~~L 124 (1102)
.....|.+||....+... .+ .||.||.+.
T Consensus 71 p~~~~C~~CG~~~e~~~~--~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNAL--DYGVCEKCHSKN 100 (119)
T ss_dssp CCEEECSSSSCEECSCCS--TTCCCSSSSSCC
T ss_pred cceEEcCCCCCEEeCCCC--CCCcCccccCCC
Confidence 346899999999988543 57 899999983
No 197
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=58.77 E-value=2.8 Score=38.30 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=26.6
Q ss_pred eecCCCccceeeccCCCccccCCCCCcccc
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAVELA 125 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~ 125 (1102)
..+|.+||+.+...++.+-..|+.|+...+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 478999999999999989999999998744
No 198
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=58.50 E-value=26 Score=40.07 Aligned_cols=39 Identities=8% Similarity=-0.022 Sum_probs=27.8
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhc-cCceEEEEEcCCch
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHH-GRRKALWISVGSDL 282 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~-Gr~~~~w~s~s~~L 282 (1102)
.++-=+.++||+..+|++++...+. +..+.++++-+.+-
T Consensus 181 ~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~q 220 (385)
T 2o0j_A 181 TVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSM 220 (385)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHH
T ss_pred EEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHH
Confidence 3455568899999999998875544 44567777776654
No 199
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=58.36 E-value=23 Score=44.14 Aligned_cols=89 Identities=19% Similarity=0.114 Sum_probs=58.9
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecCccchhhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTNLGGERRF 885 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~l~GErRF 885 (1102)
++|..| .|.|-++-|+=|+-..-...|..-===.=|-.|+|-|.+.-+|..|||+|-++- +--+-|+.-+=..-++|
T Consensus 518 ~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~-G~a~~fvsleD~l~r~f 594 (822)
T 3jux_A 518 KAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDP-GESIFFLSLEDDLLRIF 594 (822)
T ss_dssp HHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCC-CEEEEEEETTSHHHHHT
T ss_pred hCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCC-eeEEEEechhHHHHHhh
Confidence 567777 499999999999987644333211111235679999999999999999998863 22223444444456889
Q ss_pred HHH-HHHHHhhcC
Q 038397 886 ASI-VAKRLESLG 897 (1102)
Q Consensus 886 aS~-VAkRLeSLG 897 (1102)
.+- +.+-++.||
T Consensus 595 g~~~~~~~m~~~~ 607 (822)
T 3jux_A 595 GSEQIGKVMNILK 607 (822)
T ss_dssp THHHHHHHHHHSS
T ss_pred hHHHHHHHHHHcC
Confidence 873 344455666
No 200
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=58.27 E-value=89 Score=33.67 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=31.2
Q ss_pred cchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc----c-CceEEEEEcCC
Q 038397 219 CLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH----G-RRKALWISVGS 280 (1102)
Q Consensus 219 ~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~----G-r~~~~w~s~s~ 280 (1102)
+.+++.+.-+..+. +..+....+++---.|+||+..+-.+..+.-.. | ....+|++...
T Consensus 25 ~~~~~~l~~~l~~~---~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 25 EAELRRLAEVLAPA---LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp HHHHHHHHHTTGGG---TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred HHHHHHHHHHHHHH---HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 45566655444332 222233344444449999998776655433221 1 34577777543
No 201
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=57.98 E-value=41 Score=35.28 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=18.8
Q ss_pred hHHHHHHHhccCCCceEEeecchhcccc
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKNL 367 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn~ 367 (1102)
.+.+++..+...-.++|+|||+|.+...
T Consensus 98 ~~~~~~~~~~~~~~~vl~iDEid~l~~~ 125 (285)
T 3h4m_A 98 LVKDIFKLAKEKAPSIIFIDEIDAIAAK 125 (285)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTHHHHBC
T ss_pred HHHHHHHHHHHcCCeEEEEECHHHhccc
Confidence 4555555554433479999999998643
No 202
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=57.63 E-value=5.2 Score=32.52 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.2
Q ss_pred eecCCCccc-eeeccCCCccccCCCCCcc
Q 038397 96 QLPCANCKA-ILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 96 ~~~C~~C~A-~~~vp~~~~~f~Cp~C~~~ 123 (1102)
.+.|..||+ .|...+.-+-+-|+.||.-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 478999999 8888888788999999974
No 203
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=57.25 E-value=4.3 Score=40.11 Aligned_cols=30 Identities=20% Similarity=0.656 Sum_probs=23.1
Q ss_pred cceecCCCccceeeccC-----------CC--------ccccCCCCCcc
Q 038397 94 KIQLPCANCKAILNVPH-----------GL--------VRFSCPQCAVE 123 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~-----------~~--------~~f~Cp~C~~~ 123 (1102)
..+..|.+||....+.. -+ ..+.||.||.+
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 34699999999988754 21 15799999998
No 204
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=56.71 E-value=70 Score=34.69 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=20.4
Q ss_pred chHHHHHHHhccCCCceEEeecchhccccC
Q 038397 339 SRLQQLVQWCGSGYDGLVIFDECHKAKNLV 368 (1102)
Q Consensus 339 sRl~Ql~~W~g~dfdgvivfDEcH~akn~~ 368 (1102)
..+.++.+.....--++|+|||.|.+....
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 126 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTR 126 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC-
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccC
Confidence 345566666654445799999999986543
No 205
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=56.34 E-value=7.9 Score=48.10 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.9
Q ss_pred cccchhhHHHHHHhhccccCCCCCcceeEeec
Q 038397 217 LSCLQIETLVYASQRHLQHLPNSARAGFFIGD 248 (1102)
Q Consensus 217 LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gD 248 (1102)
.++.+++++.-+.+..-..||.+.+-||+.=|
T Consensus 143 ~~a~~l~~l~~si~~~L~~Lp~~~~VGlITf~ 174 (769)
T 2nut_A 143 MEDEDLQALKESMQMSLSLLPPTALVGLITFG 174 (769)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCTTCEEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 34667888888888888889999999999876
No 206
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=56.02 E-value=11 Score=42.26 Aligned_cols=64 Identities=20% Similarity=0.133 Sum_probs=47.6
Q ss_pred CcceEEEEeccccccccc------ccccccccccceeEEEecCCCcHhHH-HHhhcccccC--CC-CCCCeEEEeecCcc
Q 038397 811 GKKLVAIISEAGSAGVSL------QADRRAANQKRRVHITLELPWSADRA-IQQFGRTHRS--NQ-ASAPEYRIIFTNLG 880 (1102)
Q Consensus 811 G~K~VAIISeAaSTGISL------hADrr~~NQRRRvHitLElpWsADkA-IQqfGRTHRS--NQ-vsaP~Y~~l~T~l~ 880 (1102)
..-.|-+++.||+-||.+ -|| +=|.+-.-|++..- ||.+-|.||. +| -..|.||+++++--
T Consensus 169 ~~~~i~Lltsag~~gin~~~~nl~~aD---------~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 169 FSCTVHLFSSEGINFTKYPIKSKARFD---------MLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CSEEEEEEESSCCCTTTSCCCCCSCCS---------EEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CCceEEEEECCCCCCcCcccccCCCCC---------EEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 445677889999988863 333 56899999999997 9999999998 44 47899999999977
Q ss_pred chh
Q 038397 881 GER 883 (1102)
Q Consensus 881 GEr 883 (1102)
.|.
T Consensus 240 Eh~ 242 (328)
T 3hgt_A 240 DHC 242 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 207
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=55.86 E-value=5.1 Score=41.96 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.7
Q ss_pred ceecCCCccceeeccCCCccccCCCCCcc
Q 038397 95 IQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
..-.|..||-+.. |..+..||.||++
T Consensus 170 ~~~~C~~CG~i~~---g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHK---GEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEE---SSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEc---CcCCCCCCCCCCC
Confidence 4689999999976 4556899999987
No 208
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.75 E-value=1.8 Score=36.82 Aligned_cols=50 Identities=18% Similarity=0.457 Sum_probs=33.2
Q ss_pred cccccccCcHH-HHhhhhhccccCCccccCCCCCCcccC-CCCCCccccchh
Q 038397 660 FQICEICNSEE-ERKKLLQCSCCGQLVHSGCLVPPITDV-IPSDWSCHSCKE 709 (1102)
Q Consensus 660 f~~ce~cgsed-~k~kLL~cs~cgk~~H~~cL~PP~~di-~~~dW~c~sCke 709 (1102)
...|.+|+... +...|+.|+.|..=+|..|+--..... ..+.|.|+.|..
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 34565565432 124578999999999999974433222 236899999974
No 209
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=55.48 E-value=54 Score=33.68 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=15.5
Q ss_pred hHHHHHHHhccCCCceEEeecchhcccc
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKNL 367 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn~ 367 (1102)
.+.++++.......++|++||+|.+...
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~ 113 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKK 113 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC------
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhcc
Confidence 4555666665444679999999998543
No 210
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=54.92 E-value=2.8 Score=35.37 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=23.3
Q ss_pred ecCCcceEEEeCCCcceecCCCCCCCC
Q 038397 19 RCAGCHIILTVGPGLTEFICGTCNLPQ 45 (1102)
Q Consensus 19 ~C~~C~a~l~~~pg~~~~~Cp~C~~~~ 45 (1102)
-|+.||..+-+++-...+.|+.||+..
T Consensus 20 fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 20 FCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cCcCCCCceeEeccCCEEECCCCCCEE
Confidence 499999988777777899999999974
No 211
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=54.63 E-value=5.9 Score=47.84 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=35.1
Q ss_pred eeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhC
Q 038397 243 GFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVG 294 (1102)
Q Consensus 243 Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG 294 (1102)
-.++-=+||.||+--..-.++........|++++|-...|..-+.+|+..+.
T Consensus 24 ~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 24 GVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 3456677999996543223344333334568889988889888888888764
No 212
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=54.57 E-value=43 Score=39.94 Aligned_cols=52 Identities=8% Similarity=0.012 Sum_probs=36.3
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHhccC-ceEEEEEcCCchhhhHHhhhhhh
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWHHGR-RKALWISVGSDLKFDARRDLDDV 293 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr-~~~~w~s~s~~L~~Da~RDl~di 293 (1102)
|.-++.+ |-|.||+..+|++++...+... .+.++++.+.+.-.+..++++.+
T Consensus 179 r~~~i~~-~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 179 RMTVCNL-SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp SEEEEEE-CSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cEEEEEE-cCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3333443 7899999999998777666544 47888888877766666655543
No 213
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=53.62 E-value=8.6 Score=34.00 Aligned_cols=34 Identities=18% Similarity=0.554 Sum_probs=25.3
Q ss_pred CccceecCCCccceeeccCCCccccCCCCCccccc
Q 038397 92 PTKIQLPCANCKAILNVPHGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 92 ~t~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~v 126 (1102)
+.++.-.|..||..+.+..+ ..-.||.||.-+..
T Consensus 24 ~~~v~Y~C~~CG~~~e~~~~-d~irCp~CG~RILy 57 (70)
T 1twf_L 24 TATLKYICAECSSKLSLSRT-DAVRCKDCGHRILL 57 (70)
T ss_dssp -CCCCEECSSSCCEECCCTT-STTCCSSSCCCCCB
T ss_pred CceEEEECCCCCCcceeCCC-CCccCCCCCceEeE
Confidence 35667899999999777643 34589999996544
No 214
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=53.60 E-value=3.9 Score=37.53 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=15.0
Q ss_pred ecCCCccceeec------cCCCccccCCCCCccccc
Q 038397 97 LPCANCKAILNV------PHGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 97 ~~C~~C~A~~~v------p~~~~~f~Cp~C~~~L~v 126 (1102)
..|-.|+..-+| ..+++...|-.||..--.
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 555555555222 234445566666655433
No 215
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=53.07 E-value=9.3 Score=47.45 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=25.6
Q ss_pred ccchhhHHHHHHhhccccCCCCCcceeEeec
Q 038397 218 SCLQIETLVYASQRHLQHLPNSARAGFFIGD 248 (1102)
Q Consensus 218 S~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gD 248 (1102)
++.+|+++.-+.+..-..||.+.|-||+.=|
T Consensus 133 ~~~~l~~l~~sl~~~L~~Lp~~~~VGlITf~ 163 (768)
T 1m2o_A 133 ETENLDSLKESIITSLSLLPPNALIGLITYG 163 (768)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTCEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 3567888888888887789999999999866
No 216
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=52.90 E-value=4.6 Score=35.85 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=30.4
Q ss_pred eecCCCccceeeccCCCccccCCCCCcccccccccccccC
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAVELAVDMSKVKQFF 135 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~v~~~~~~~~~ 135 (1102)
.+-|. ||+.+-+..+-..-.|| ||.-+-+. +++-|.
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~--k~rif~ 39 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVK--DRRIFG 39 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECC--SSSCBS
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeec--eEEEEE
Confidence 57899 99999999999999999 99987773 555555
No 217
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=52.89 E-value=6.8 Score=35.37 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.9
Q ss_pred ccceeecCCcceEEEeCCCcceecCCCCCCCCC
Q 038397 14 VGVQVRCAGCHIILTVGPGLTEFICGTCNLPQM 46 (1102)
Q Consensus 14 ~~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~ 46 (1102)
..|.+.|..|++..++.--.-..+||.|+-.+.
T Consensus 34 ~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 34 MTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 567889999999999998666669999997654
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.38 E-value=68 Score=33.89 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=15.8
Q ss_pred HHHHhccCCCceEEeecchhcc
Q 038397 344 LVQWCGSGYDGLVIFDECHKAK 365 (1102)
Q Consensus 344 l~~W~g~dfdgvivfDEcH~ak 365 (1102)
+..++.....++|+|||.|++.
T Consensus 111 ~~~~~~~~~~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAIEKAH 132 (311)
T ss_dssp HHHHHHHCSSEEEEEETGGGSC
T ss_pred HHHHHHhCCCeEEEEeChhhcC
Confidence 3445544556899999999874
No 219
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=52.13 E-value=5.4 Score=44.46 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=22.5
Q ss_pred cceecCCCccceeeccCCCccccCCCCCcc
Q 038397 94 KIQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
.-.++|+-|+..=+++ |..||+||..
T Consensus 206 ~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred cEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 3479999999999875 6799999997
No 220
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=51.68 E-value=44 Score=36.02 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=17.1
Q ss_pred cceeEeecCCCCCcchhhHHHHHH
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWE 264 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~ 264 (1102)
..|+|+--..|+||+-.+-+|..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468888555999999877555433
No 221
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=51.52 E-value=8.1 Score=35.59 Aligned_cols=30 Identities=23% Similarity=0.655 Sum_probs=21.8
Q ss_pred ceeecCCcceEEE---------eCCCcc------eecCCCCCCCC
Q 038397 16 VQVRCAGCHIILT---------VGPGLT------EFICGTCNLPQ 45 (1102)
Q Consensus 16 ~~~~C~~C~a~l~---------~~pg~~------~~~Cp~C~~~~ 45 (1102)
..-+|..||-+.. ++||+. .+.||.||...
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 78 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATK 78 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCG
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCH
Confidence 3567999998875 456664 35799999743
No 222
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.09 E-value=2.3 Score=37.90 Aligned_cols=50 Identities=28% Similarity=0.733 Sum_probs=33.8
Q ss_pred ccccccccCcHHHHhhhhhcc--ccCCccccCCCCCCcc--c---CCCCCCccccchh
Q 038397 659 EFQICEICNSEEERKKLLQCS--CCGQLVHSGCLVPPIT--D---VIPSDWSCHSCKE 709 (1102)
Q Consensus 659 Ef~~ce~cgsed~k~kLL~cs--~cgk~~H~~cL~PP~~--d---i~~~dW~c~sCke 709 (1102)
+.+.| +|+..++...|..|+ .|..=+|..|+--+.. + ...+.|+|+.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 34556 577654445688999 8999999998632211 1 2346899999973
No 223
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.60 E-value=1.2 Score=39.49 Aligned_cols=49 Identities=20% Similarity=0.578 Sum_probs=33.0
Q ss_pred cccccccCcHHHHhhhhhccccCCccccCCCCCCccc---C--CCCCCccccchh
Q 038397 660 FQICEICNSEEERKKLLQCSCCGQLVHSGCLVPPITD---V--IPSDWSCHSCKE 709 (1102)
Q Consensus 660 f~~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~~d---i--~~~dW~c~sCke 709 (1102)
...| +|+.......|+.|+.|..=+|..|+--.... + ..+.|.|+.|..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3445 56654443468899999999999997433211 1 347899999973
No 224
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.28 E-value=7.3 Score=35.19 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.7
Q ss_pred eee-cCCcceEEEeCCCcceecCCCCCC
Q 038397 17 QVR-CAGCHIILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 17 ~~~-C~~C~a~l~~~pg~~~~~Cp~C~~ 43 (1102)
.++ |++|++.+...++...+.||.|+.
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~ 51 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQ 51 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCC
T ss_pred CEeECcCCCchheecCCCCceEeCCCCC
Confidence 454 999999999999988999999996
No 225
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=50.01 E-value=7.1 Score=39.85 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceecCCCccceeeccCCCccccCCCCCcc
Q 038397 95 IQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
..-.|.+||-+.. + -.+-.||.||++
T Consensus 137 ~~~~C~~CG~i~~-~--~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAV-D--EAPEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEE-S--CCCSBCTTTCCB
T ss_pred CeeEeCCCCCeeC-C--CCCCCCCCCCCC
Confidence 3567999999987 2 234499999987
No 226
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=49.31 E-value=34 Score=41.10 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=47.5
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|.+.|.++|..+..+ .-+++--++|.||+.+++.+|..-......+.+-++-++.-......-+.+.|.
T Consensus 180 ~ln~~Q~~av~~~l~~----------~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~ 249 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQR----------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL 249 (624)
T ss_dssp CCCHHHHHHHHHHHTC----------SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHhcC----------CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCC
Confidence 4889999998877631 123455569999999999998765543445566666676555555555555554
Q ss_pred C
Q 038397 296 T 296 (1102)
Q Consensus 296 ~ 296 (1102)
.
T Consensus 250 ~ 250 (624)
T 2gk6_A 250 K 250 (624)
T ss_dssp C
T ss_pred e
Confidence 3
No 227
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=49.01 E-value=4 Score=40.15 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=23.9
Q ss_pred ecCCcceEEEeCCCcceecCCCCCCCCC
Q 038397 19 RCAGCHIILTVGPGLTEFICGTCNLPQM 46 (1102)
Q Consensus 19 ~C~~C~a~l~~~pg~~~~~Cp~C~~~~~ 46 (1102)
.|+.|+.+.+|..|.. |.||.|+.+-.
T Consensus 29 ~CP~C~seytYeDg~l-~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYTYEDGAL-LVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCCEECSSS-EEETTTTEEEC
T ss_pred CCCCCCCcceEecCCe-EECCccccccC
Confidence 4999999999999875 99999998653
No 228
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.50 E-value=8.8 Score=33.37 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceecCCCccceeeccC-CCccccCCCCCccccccc
Q 038397 95 IQLPCANCKAILNVPH-GLVRFSCPQCAVELAVDM 128 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp~-~~~~f~Cp~C~~~L~v~~ 128 (1102)
+.+.|.+|+.++.|=. --..-.|..||.-|+-+-
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 4577777777766532 222336777777776653
No 229
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=48.33 E-value=7.6 Score=38.85 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=22.1
Q ss_pred ceecCCCccceeeccCCCccccCCCCCccc
Q 038397 95 IQLPCANCKAILNVPHGLVRFSCPQCAVEL 124 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L 124 (1102)
....|.+||...... ...-.||.||.++
T Consensus 131 ~~y~C~~Cg~~~~~~--~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRKFSTL--PPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCEESSC--CGGGBCTTTCCBE
T ss_pred EEEECCCCCCcccCC--CCCCcCCCCCCcc
Confidence 468999999999865 2234899999985
No 230
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=48.24 E-value=8.7 Score=34.97 Aligned_cols=30 Identities=20% Similarity=0.617 Sum_probs=22.3
Q ss_pred ceeecCCcceEEE---------eCCCcc------eecCCCCCCCC
Q 038397 16 VQVRCAGCHIILT---------VGPGLT------EFICGTCNLPQ 45 (1102)
Q Consensus 16 ~~~~C~~C~a~l~---------~~pg~~------~~~Cp~C~~~~ 45 (1102)
..-+|..||-+.. ++||+. .+.||.||...
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 70 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAK 70 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCG
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCH
Confidence 4677999998875 456763 56899999743
No 231
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=48.15 E-value=1.2e+02 Score=33.11 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=43.8
Q ss_pred hHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhC-----CCccEEEEecCCCCCCCccchhhhc
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARL-----PEARVVYCSATGASEPRNMGYMVRL 414 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~l-----P~ARvvY~SATgasep~Nl~ym~RL 414 (1102)
.+.++.+.....--++|+|||.|.............+. ..+.+|-..+ +..+|+...||-..+--+-+...|+
T Consensus 93 ~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~--~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf 170 (322)
T 1xwi_A 93 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR--RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 170 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH--HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTC
T ss_pred HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH--HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhc
Confidence 34555555544445799999999986543222211111 1122222211 4567888777744433333455665
Q ss_pred cccCCCCCCCCHHHHH
Q 038397 415 GLWGAGTCFKDFQIFL 430 (1102)
Q Consensus 415 GLWg~gt~f~~~~~f~ 430 (1102)
...= -.+.++.++..
T Consensus 171 ~~~i-~i~~P~~~~r~ 185 (322)
T 1xwi_A 171 EKRI-YIPLPEPHARA 185 (322)
T ss_dssp CEEE-ECCCCCHHHHH
T ss_pred CeEE-EeCCcCHHHHH
Confidence 3220 12445555443
No 232
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=47.93 E-value=2.7 Score=42.37 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=36.1
Q ss_pred cccccccCcHH-HHhhhhhccccCCccccCCCCCCccc-CCCCCCccccchhhh
Q 038397 660 FQICEICNSEE-ERKKLLQCSCCGQLVHSGCLVPPITD-VIPSDWSCHSCKEKT 711 (1102)
Q Consensus 660 f~~ce~cgsed-~k~kLL~cs~cgk~~H~~cL~PP~~d-i~~~dW~c~sCkek~ 711 (1102)
...| +|+... +...|+.|+.|..-+|..|+..+... ...+.|.|+.|+...
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 4567 777642 34558899999999999997543221 235789999998543
No 233
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.73 E-value=11 Score=33.18 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCCCCCCCccceeecCCcceEEEeC-----CCcc----eecCCCCCCC
Q 038397 6 VPPPPPPNVGVQVRCAGCHIILTVG-----PGLT----EFICGTCNLP 44 (1102)
Q Consensus 6 ~~~~~~~~~~~~~~C~~C~a~l~~~-----pg~~----~~~Cp~C~~~ 44 (1102)
.||++|+-..-.-+|++|+..+... -|.. =|.|-.|+..
T Consensus 4 ~~~~~~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 4 GSSGQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp CCCCCCCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCCCcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCC
Confidence 3444454444557899999877422 2222 2899999963
No 234
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=47.53 E-value=0.98 Score=42.92 Aligned_cols=36 Identities=36% Similarity=0.845 Sum_probs=28.2
Q ss_pred hhhhhccccCCccccCCCCC--Ccc-cCCCCCCccccch
Q 038397 673 KKLLQCSCCGQLVHSGCLVP--PIT-DVIPSDWSCHSCK 708 (1102)
Q Consensus 673 ~kLL~cs~cgk~~H~~cL~P--P~~-di~~~dW~c~sCk 708 (1102)
++|+.|+.|++.+|..|+.. +.. .++..+|.|+.|+
T Consensus 24 ~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 24 EELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45889999999999999853 222 3567899999885
No 235
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=47.47 E-value=6.9 Score=40.43 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=19.1
Q ss_pred eecCCCccceeeccCCCccccCCCCCcc
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
.-.|..||-+..-. -.+-.||.||++
T Consensus 155 ~~~C~~CG~~~~g~--~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGT--GAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEE--ECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCC--CCCCCCCCCcCC
Confidence 67899999997521 112299999997
No 236
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=47.19 E-value=4.2 Score=35.28 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=31.1
Q ss_pred ccccccCcHHHHhhhhhcc--ccCCccccCCCC---CC-cccCCCCCCccccch
Q 038397 661 QICEICNSEEERKKLLQCS--CCGQLVHSGCLV---PP-ITDVIPSDWSCHSCK 708 (1102)
Q Consensus 661 ~~ce~cgsed~k~kLL~cs--~cgk~~H~~cL~---PP-~~di~~~dW~c~sCk 708 (1102)
+.| +|+..++...|+.|+ .|..-+|..|+- .| ......+.|.|+.|+
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 445 465544444588898 499999999972 12 122334689999998
No 237
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=46.73 E-value=9 Score=34.87 Aligned_cols=42 Identities=24% Similarity=0.575 Sum_probs=0.0
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCccceecCCCccceeeccCCCcc
Q 038397 35 EFICGTCNLPQMLPPELMPASTGGSVPNNTTSSNTTNSTRPTHMKAASSHVPALGIDPTKIQLPCANCKAILNVPHGLVR 114 (1102)
Q Consensus 35 ~~~Cp~C~~~~~l~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~t~~~~~C~~C~A~~~vp~~~~~ 114 (1102)
+..||.|+.+..--... ..|..|++.+..-.
T Consensus 2 ~~~CP~C~~~l~~~~~~---------------------------------------------~~C~~C~~~~~~~a---- 32 (81)
T 2jrp_A 2 EITCPVCHHALERNGDT---------------------------------------------AHCETCAKDFSLQA---- 32 (81)
T ss_dssp CCCCSSSCSCCEECSSE---------------------------------------------EECTTTCCEEEEEE----
T ss_pred CCCCCCCCCccccCCCc---------------------------------------------eECccccccCCCcc----
Q ss_pred ccCCCCCccccc
Q 038397 115 FSCPQCAVELAV 126 (1102)
Q Consensus 115 f~Cp~C~~~L~v 126 (1102)
-||.||.+|.+
T Consensus 33 -fCPeCgq~Le~ 43 (81)
T 2jrp_A 33 -LCPDCRQPLQV 43 (81)
T ss_dssp -ECSSSCSCCCE
T ss_pred -cCcchhhHHHH
No 238
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=46.17 E-value=11 Score=46.80 Aligned_cols=36 Identities=36% Similarity=0.836 Sum_probs=31.7
Q ss_pred eeecCC--cceEE----EeCCCcceecCCCCCCCCCCCCCCC
Q 038397 17 QVRCAG--CHIIL----TVGPGLTEFICGTCNLPQMLPPELM 52 (1102)
Q Consensus 17 ~~~C~~--C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~~ 52 (1102)
-+||.. |+|.+ .+-.|-..+.|+.|+..+.+|++-+
T Consensus 53 pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~~y~ 94 (768)
T 1m2o_A 53 PVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYT 94 (768)
T ss_dssp CCBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCCBCCGGGC
T ss_pred CCccCCCCCCeEECCceEEeCCCCEEEcccCCCCCCCChHHc
Confidence 489998 99999 5778888999999999999988764
No 239
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=45.73 E-value=32 Score=42.89 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=55.5
Q ss_pred CCCCccCccccccc--ccCCcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEE
Q 038397 199 PEPTYDLLIKYDLE--SSKSLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWI 276 (1102)
Q Consensus 199 P~~~y~~~lp~~~~--~~g~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~ 276 (1102)
|+..+...+|.... ....|.+.|.+||..+.+ + + -++|--++|.||+++++.+|..-......+.+-+
T Consensus 341 ~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~-~--------~-~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~ 410 (802)
T 2xzl_A 341 VDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQ-R--------P-LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVC 410 (802)
T ss_dssp CCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTT-C--------S-EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccccccccCcccccccccccCCHHHHHHHHHHhc-C--------C-CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 44444444443221 123588999999887753 1 1 2355557999999999999876554334457777
Q ss_pred EcCCchhhhHHhhhhhhCCC
Q 038397 277 SVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 277 s~s~~L~~Da~RDl~diG~~ 296 (1102)
+-++.-......-|.+.|..
T Consensus 411 a~tn~A~d~l~~rL~~~g~~ 430 (802)
T 2xzl_A 411 APSNVAVDHLAAKLRDLGLK 430 (802)
T ss_dssp ESSHHHHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHHHhhCcc
Confidence 77776665555566666644
No 240
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=45.40 E-value=2.5e+02 Score=28.16 Aligned_cols=50 Identities=16% Similarity=0.473 Sum_probs=33.2
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~ 296 (1102)
.++|. +|+||+-.+--++.....+|. +++|++.... ..+..+.+..+|..
T Consensus 27 ~i~G~-~GsGKTtl~~~~~~~~~~~~~-~v~~~~~e~~-~~~~~~~~~~~g~~ 76 (247)
T 2dr3_A 27 LLSGG-PGTGKTIFSQQFLWNGLKMGE-PGIYVALEEH-PVQVRQNMAQFGWD 76 (247)
T ss_dssp EEEEC-TTSSHHHHHHHHHHHHHHTTC-CEEEEESSSC-HHHHHHHHHTTTCC
T ss_pred EEECC-CCCCHHHHHHHHHHHHHhcCC-eEEEEEccCC-HHHHHHHHHHcCCC
Confidence 44565 999999876666666555665 5999997654 34455555566654
No 241
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=45.40 E-value=9.5 Score=31.15 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=20.1
Q ss_pred ecCCCccceeeccCCC-------c-cccCCCCCcc
Q 038397 97 LPCANCKAILNVPHGL-------V-RFSCPQCAVE 123 (1102)
Q Consensus 97 ~~C~~C~A~~~vp~~~-------~-~f~Cp~C~~~ 123 (1102)
-.|..||-+-.-..|- . .+.||.||++
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 6799999988743332 2 4799999986
No 242
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.23 E-value=7.5 Score=32.16 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=22.5
Q ss_pred CccceecCCCccceeeccCCCccccCCCCCcc
Q 038397 92 PTKIQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 92 ~t~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
.+...--|..||+-+-..+...|+.|+-||-.
T Consensus 15 v~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred EEEecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 34445789999984333334589999999964
No 243
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=43.69 E-value=18 Score=46.47 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCC
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQ 866 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQ 866 (1102)
++|-+|+.+|+|..+-..||+-.-. - -+ |-+-.|-+....||.+|||+|...
T Consensus 643 ~~Fk~g~i~ILIvvd~lltGfDiP~------l--~t-lylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 643 QRVKNQDIDLLIVVGMFLTGFDAPT------L--NT-LFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HHHHTTSSSEEEESSTTSSSCCCTT------E--EE-EEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHcCCCeEEEEcchHHhCcCccc------c--cE-EEEccCCCccceeehhhccCcCCC
Confidence 6899999999999999999995431 1 12 456789999999999999999875
No 244
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=42.80 E-value=65 Score=33.98 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=30.1
Q ss_pred HHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHH-HHHHHhhhCCC----ccEEEEecCCC
Q 038397 341 LQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGE-AVLELQARLPE----ARVVYCSATGA 402 (1102)
Q Consensus 341 l~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~-avl~LQ~~lP~----ARvvY~SATga 402 (1102)
+++++..+...-.++|+|||.|.+...........++... ..+..-+.++. .+|+...+|..
T Consensus 102 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 102 VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 4444444443345799999999986554222211122222 23333344443 45766666643
No 245
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=42.78 E-value=4.8 Score=36.56 Aligned_cols=31 Identities=16% Similarity=0.612 Sum_probs=23.0
Q ss_pred eecCCCccceeecc----------CCCccccCCCCCccccc
Q 038397 96 QLPCANCKAILNVP----------HGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp----------~~~~~f~Cp~C~~~L~v 126 (1102)
...|.-|+..+.-. ++...|.|++|+....-
T Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 106 (124)
T 2dlq_A 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ 106 (124)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESS
T ss_pred CeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCC
Confidence 47899999886543 34557999999986543
No 246
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=41.79 E-value=57 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=18.5
Q ss_pred hHHHHHHHhccC-CCceEEeecchhcccc
Q 038397 340 RLQQLVQWCGSG-YDGLVIFDECHKAKNL 367 (1102)
Q Consensus 340 Rl~Ql~~W~g~d-fdgvivfDEcH~akn~ 367 (1102)
.+.++++.+... -..+||+||+|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~vl~iDe~~~l~~~ 130 (187)
T 2p65_A 102 RLKSILKEVQDAEGQVVMFIDEIHTVVGA 130 (187)
T ss_dssp HHHHHHHHHHHTTTSEEEEETTGGGGSSS
T ss_pred HHHHHHHHHHhcCCceEEEEeCHHHhccc
Confidence 455555555443 2349999999998643
No 247
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=41.76 E-value=11 Score=33.72 Aligned_cols=28 Identities=32% Similarity=0.789 Sum_probs=20.8
Q ss_pred CCCccceeecCCcceEEEeCCCcceecCCCCCC
Q 038397 11 PPNVGVQVRCAGCHIILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 11 ~~~~~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~ 43 (1102)
.++.....||..|+..+ |++.|.| .||.
T Consensus 19 ~~~k~~~~RC~~C~kkv----gL~~f~C-rCg~ 46 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKV----GVTGFKC-RCGS 46 (74)
T ss_dssp CCTTCCCCBCSSSCCBC----TTTCEEC-TTSC
T ss_pred ccCcccCccchhhcCcc----cccceEe-ccCC
Confidence 33455567999999876 4557999 7985
No 248
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=41.28 E-value=14 Score=46.05 Aligned_cols=36 Identities=25% Similarity=0.584 Sum_probs=31.9
Q ss_pred eeecCC--cceEE----EeCCCcceecCCCCCCCCCCCCCCC
Q 038397 17 QVRCAG--CHIIL----TVGPGLTEFICGTCNLPQMLPPELM 52 (1102)
Q Consensus 17 ~~~C~~--C~a~l----~~~pg~~~~~Cp~C~~~~~l~p~~~ 52 (1102)
-+||.. |+|.+ .+-.+-..+.|+.|+..+.+|++-.
T Consensus 62 pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~~Y~ 103 (769)
T 2nut_A 62 PVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 103 (769)
T ss_dssp CCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCEEECCGGGT
T ss_pred CCcCCCCCCCeEECCceEEeCCCCEEEccCCCCCCCCChHHc
Confidence 589998 99999 6778888999999999999988763
No 249
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=40.91 E-value=3.2 Score=36.70 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=35.0
Q ss_pred ccCCCCCCCeEEEeecCccchhhhHHHHHHHHhhcCCc
Q 038397 862 HRSNQASAPEYRIIFTNLGGERRFASIVAKRLESLGAL 899 (1102)
Q Consensus 862 HRSNQvsaP~Y~~l~T~l~GErRFaS~VAkRLeSLGAL 899 (1102)
|=+-|.-..+|.-|+--..|.|.|..+.-+||+.||-.
T Consensus 6 HE~TQsD~aLy~RLVP~~kG~R~Fs~iql~RL~kLGI~ 43 (71)
T 2eo2_A 6 SGSTQTDKALYNRLVPLVNGVREFSEIQLSRLKKLGIH 43 (71)
T ss_dssp CCSSCSHHHHHHHHSCCSSSSCCCCHHHHHHHHHHTCC
T ss_pred cccccchHHHHHhhCCCCCCeeecCHHHHHHHHHcCCC
Confidence 77889988999999999999999999999999999864
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=40.77 E-value=1e+02 Score=31.98 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=67.3
Q ss_pred eecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCc-hhhhHHhhhhhhCCCcccccccCCCCCCcCCCCccccccceEE
Q 038397 246 IGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSD-LKFDARRDLDDVGATCIEVHALNKLPYSKLDSRSVGIREGVVF 324 (1102)
Q Consensus 246 ~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~-L~~Da~RDl~diG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF 324 (1102)
+=-|.|.||+--..|+.+..+-+|.| ++.+..... ..+.-..=+..++ +.++... .|..+
T Consensus 33 v~tG~GkGKTTaA~GlalRA~g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~---v~~~~~g---------------~gf~~ 93 (196)
T 1g5t_A 33 VFTGNGKGKTTAAFGTAARAVGHGKN-VGVVQFIKGTWPNGERNLLEPHG---VEFQVMA---------------TGFTW 93 (196)
T ss_dssp EEESSSSCHHHHHHHHHHHHHHTTCC-EEEEESSCCSSCCHHHHHHGGGT---CEEEECC---------------TTCCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCccHHHHHHhCC---cEEEEcc---------------ccccc
Confidence 34455688998889999999999987 787765432 3322222233332 3333221 12222
Q ss_pred eehhhhhh-ccccccchHHHHHHHhcc-CCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEec
Q 038397 325 LTYSSLIA-SSEKGRSRLQQLVQWCGS-GYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSA 399 (1102)
Q Consensus 325 ~TYs~L~~-~~~~~~sRl~Ql~~W~g~-dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SA 399 (1102)
.| +-.. ....-...|+.+.+.+.. .+| +||+||.=-+-++.- - .....+--|.++.++.-||.++=
T Consensus 94 ~~--~~~~~~~~~a~~~l~~a~~~l~~~~yD-lvILDEi~~al~~g~----l--~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 94 ET--QNREADTAACMAVWQHGKRMLADPLLD-MVVLDELTYMVAYDY----L--PLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp CG--GGHHHHHHHHHHHHHHHHHHTTCTTCS-EEEEETHHHHHHTTS----S--CHHHHHHHHHTSCTTCEEEEECS
T ss_pred CC--CCcHHHHHHHHHHHHHHHHHHhcCCCC-EEEEeCCCccccCCC----C--CHHHHHHHHHhCcCCCEEEEECC
Confidence 11 0000 001113456677777743 344 999999976644421 1 12223334556767777887653
No 251
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=40.12 E-value=2.9 Score=41.15 Aligned_cols=45 Identities=20% Similarity=0.710 Sum_probs=35.5
Q ss_pred ccccCcHHHHhhhhhccccCCccccCCCCCCc-----ccC--CCCCCccccchhh
Q 038397 663 CEICNSEEERKKLLQCSCCGQLVHSGCLVPPI-----TDV--IPSDWSCHSCKEK 710 (1102)
Q Consensus 663 ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP~-----~di--~~~dW~c~sCkek 710 (1102)
|..|+.. .+++-|+.|.+-+|..|+.|++ ..+ +.+.|.|..|..+
T Consensus 60 C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 60 CRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 7777754 3477899999999999998874 233 6889999999754
No 252
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=39.85 E-value=12 Score=31.61 Aligned_cols=27 Identities=33% Similarity=0.748 Sum_probs=22.9
Q ss_pred eecCCcceEEEeCCCcceecCC--CCCCCCC
Q 038397 18 VRCAGCHIILTVGPGLTEFICG--TCNLPQM 46 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg~~~~~Cp--~C~~~~~ 46 (1102)
+.|+-|+..|.+.. .+|.|+ .||..--
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAYP 39 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEEe
Confidence 57999999999987 889999 9986433
No 253
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=39.68 E-value=5.2 Score=43.03 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=23.6
Q ss_pred ecCCcceEEE------eCCCcceecCCCCCCCCCCCCC
Q 038397 19 RCAGCHIILT------VGPGLTEFICGTCNLPQMLPPE 50 (1102)
Q Consensus 19 ~C~~C~a~l~------~~pg~~~~~Cp~C~~~~~l~p~ 50 (1102)
+|.||+..|. +..|-.-..||+||...-..++
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~~ 237 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEGA 237 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSCC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCcc
Confidence 4999999882 3345556999999987666544
No 254
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=39.62 E-value=14 Score=30.84 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=22.4
Q ss_pred ceeecCCcceEEEe----------CCCcceecCCCCCCC
Q 038397 16 VQVRCAGCHIILTV----------GPGLTEFICGTCNLP 44 (1102)
Q Consensus 16 ~~~~C~~C~a~l~~----------~pg~~~~~Cp~C~~~ 44 (1102)
+.++|+.||..-.+ .|-++.|.|+.||..
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 47889999974432 477888999999963
No 255
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=39.01 E-value=12 Score=33.01 Aligned_cols=30 Identities=30% Similarity=0.859 Sum_probs=21.9
Q ss_pred eeecCCcceEEE---------eCCCcc------eecCCCCCCCCC
Q 038397 17 QVRCAGCHIILT---------VGPGLT------EFICGTCNLPQM 46 (1102)
Q Consensus 17 ~~~C~~C~a~l~---------~~pg~~------~~~Cp~C~~~~~ 46 (1102)
.-+|..||-+.. ++|||. .+.||.||....
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~ 51 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKN 51 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGG
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHH
Confidence 567999998864 456663 468999998544
No 256
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=38.51 E-value=10 Score=32.00 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=25.4
Q ss_pred ccceecCCCccceeeccCCCccccCCCCCccc
Q 038397 93 TKIQLPCANCKAILNVPHGLVRFSCPQCAVEL 124 (1102)
Q Consensus 93 t~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L 124 (1102)
++.+.-|..||+.+-+...-.|+.|+-||-..
T Consensus 15 ~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 15 VRKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EEccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 44568899999977766656799999999764
No 257
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.16 E-value=19 Score=31.43 Aligned_cols=26 Identities=31% Similarity=0.719 Sum_probs=20.1
Q ss_pred CccceeecCCcceEEEeCCCcceecCCCCCC
Q 038397 13 NVGVQVRCAGCHIILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 13 ~~~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~ 43 (1102)
|.....||..|+..| |++.|.| .||.
T Consensus 11 ~~~~~~rC~~C~kkv----gl~~f~C-rCg~ 36 (64)
T 1wg2_A 11 PVRPNNRCFSCNKKV----GVMGFKC-KCGS 36 (64)
T ss_dssp CSCCSCSCTTTCCCC----TTSCEEC-TTSC
T ss_pred CCCcCCcChhhCCcc----cccCeEe-ecCC
Confidence 444567999999875 4568999 8995
No 258
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=38.14 E-value=35 Score=39.90 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=24.8
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHh-ccC--ceEEEEEcCCc
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWH-HGR--RKALWISVGSD 281 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l-~Gr--~~~~w~s~s~~ 281 (1102)
|.-.+.|- +|+||++.+.-+..+.-. +++ ...+|++++..
T Consensus 148 ~~v~I~G~-~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 148 GWVTIHGM-AGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred ceEEEEcC-CCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 44445565 799999988666433211 222 24899999765
No 259
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=37.38 E-value=64 Score=40.23 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=48.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA 295 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~ 295 (1102)
.|.+.|.+||..+... .-+++--++|.||+.+++.+|..-......+.+-.+-++.-......-+.+.|.
T Consensus 356 ~Ln~~Q~~Av~~~l~~----------~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~ 425 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQR----------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL 425 (800)
T ss_dssp CCCHHHHHHHHHHHTS----------SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHhccC----------CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCc
Confidence 5889999998887642 123555679999999999988765543445576666676555555555555554
Q ss_pred C
Q 038397 296 T 296 (1102)
Q Consensus 296 ~ 296 (1102)
.
T Consensus 426 ~ 426 (800)
T 2wjy_A 426 K 426 (800)
T ss_dssp C
T ss_pred c
Confidence 3
No 260
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=37.17 E-value=98 Score=34.26 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=18.4
Q ss_pred hHHHHHHHhccCCCceEEeecchhcccc
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKNL 367 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn~ 367 (1102)
.+.++++.....-.+||+|||+|.+...
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~ 158 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGT 158 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC-
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhccc
Confidence 3455555554434579999999987644
No 261
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.05 E-value=16 Score=34.77 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=21.4
Q ss_pred ecCCCccceeeccCCCccccCCCCCccccc
Q 038397 97 LPCANCKAILNVPHGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 97 ~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~v 126 (1102)
-.|..||-.+ ...--.+-.||.|+++=+.
T Consensus 68 ~~C~~CG~~F-~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVF-KAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBC-CCCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCee-cccCCCCCCCcCCCCCccC
Confidence 4799999998 3333345799999998544
No 262
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.20 E-value=1.1e+02 Score=37.30 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=24.8
Q ss_pred cchhhHHHHHHhhccccCCCCC--cceeEeecCCCCCcchhhHHHH
Q 038397 219 CLQIETLVYASQRHLQHLPNSA--RAGFFIGDGAGVGKGRTIAGLI 262 (1102)
Q Consensus 219 ~~Qle~v~ya~q~h~~~l~~g~--R~Gf~~gDg~GvGKGR~~AgiI 262 (1102)
+..++.|.-+..+...-+.+.. ...|++---+|+||+-.+-+|-
T Consensus 497 ~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 497 DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 3445566666666543333222 2246666669999987664443
No 263
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=35.75 E-value=16 Score=38.12 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=21.2
Q ss_pred ccceecCCCccceeeccCCC--ccccCCCCC
Q 038397 93 TKIQLPCANCKAILNVPHGL--VRFSCPQCA 121 (1102)
Q Consensus 93 t~~~~~C~~C~A~~~vp~~~--~~f~Cp~C~ 121 (1102)
.....+|.+||.-.-+..+- .+|.||+|.
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp SEEEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred ceeeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 34568999999876555444 489999999
No 264
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=35.70 E-value=11 Score=30.75 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=25.6
Q ss_pred eeecCCcceEEEe-------CCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIILTV-------GPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l~~-------~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
...|..||..+.. -.|-..|.|++||..-.....+
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTC
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccc
Confidence 3679999998743 3455779999999865555554
No 265
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=34.65 E-value=18 Score=31.11 Aligned_cols=25 Identities=20% Similarity=0.586 Sum_probs=20.0
Q ss_pred eecCCCccceeeccCCCccccCCCCCccccc
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~v 126 (1102)
...|.+||.-+- .-.||.||.+..+
T Consensus 6 mr~C~~CgvYTL------k~~CP~CG~~T~~ 30 (60)
T 2apo_B 6 MKKCPKCGLYTL------KEICPKCGEKTVI 30 (60)
T ss_dssp CEECTTTCCEES------SSBCSSSCSBCBC
T ss_pred ceeCCCCCCEec------cccCcCCCCcCCC
Confidence 468999987665 5579999999766
No 266
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=34.59 E-value=15 Score=31.47 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=24.6
Q ss_pred ecCCC--ccceeec----cCCCccccCCCCCccccccc
Q 038397 97 LPCAN--CKAILNV----PHGLVRFSCPQCAVELAVDM 128 (1102)
Q Consensus 97 ~~C~~--C~A~~~v----p~~~~~f~Cp~C~~~L~v~~ 128 (1102)
+.|.+ |+|.+|. ..+-.++.|++|+..=.++.
T Consensus 10 vRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 10 VLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred cccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 78998 9999984 34445799999998755543
No 267
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.24 E-value=2.1e+02 Score=30.32 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=11.1
Q ss_pred CceEEeecchhcc
Q 038397 353 DGLVIFDECHKAK 365 (1102)
Q Consensus 353 dgvivfDEcH~ak 365 (1102)
.++|++||.|.+.
T Consensus 91 ~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 91 GDILFIDEIHRLS 103 (324)
T ss_dssp TCEEEETTTTSCC
T ss_pred CCEEEEECCcccc
Confidence 5799999999875
No 268
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=34.22 E-value=1.9e+02 Score=30.95 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=50.6
Q ss_pred CceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhhhhhhHHHHHHH--------------
Q 038397 463 GAEFEVIEAPLEAEMTDMYKKAAEFWAELRVELLSASAFLANDKPNSSQLWRLYWSGHQRFFRHMC-------------- 528 (1102)
Q Consensus 463 gvef~i~e~~l~~~~~~~Yd~~a~~w~~~~~~~~~a~e~~~~~~~~~~~~~~~FwsahQrFFk~l~-------------- 528 (1102)
.-...++.++||++|+++|++..+-. ... +...... .-.....+...+ .+++|
T Consensus 27 ~k~e~~v~v~ls~~Q~~~Y~~~~~~~---~~~-------~~~~~~~--~~~~~~l~~l~~-Lrq~~~hP~l~~~~~~~~~ 93 (271)
T 1z5z_A 27 DKIETNVYCNLTPEQAAMYKAEVENL---FNN-------IDSVTGI--KRKGMILSTLLK-LKQIVDHPALLKGGEQSVR 93 (271)
T ss_dssp -CEEEEEEECCCHHHHHHHHHHHHHH---HHH-------TTTCCHH--HHHHHHHHHHHH-HHHHTTCTHHHHCSCCCST
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHH---HHH-------HHhcccc--chHHHHHHHHHH-HHHHcCCHHHhcCCccccc
Confidence 34456778899999999999764321 111 1110000 000111111111 12232
Q ss_pred HhcCchHHHHHHHHHHHCCCeEEEEEecchhH
Q 038397 529 MSAKVPATVRLAKKALAEGKCVVIGLQSTGEA 560 (1102)
Q Consensus 529 ~a~Kv~~~V~~a~eal~~Gk~vVIgLqSTGEA 560 (1102)
.+.|+..++++..+.++.|++|||=-|++..+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~ 125 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMG 125 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHH
Confidence 36789999999999999999999999988654
No 269
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=33.62 E-value=19 Score=30.88 Aligned_cols=22 Identities=45% Similarity=1.250 Sum_probs=18.6
Q ss_pred eecCCCccceeeccCCCccccCCCCCc
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAV 122 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~ 122 (1102)
.+.|.+||. +..||- -||.||.
T Consensus 30 l~~c~~cGe-~~~~H~----vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKA-MKPPHT----VCPECGY 51 (60)
T ss_dssp CEECTTTCC-EECTTS----CCTTTCE
T ss_pred eeECCCCCC-eecceE----EcCCCCc
Confidence 389999998 788886 5999994
No 270
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=33.55 E-value=70 Score=40.25 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=58.4
Q ss_pred hhhcCCcceEEEEecccccccccccccccccccceeEEEecCCCcHhHHHHhhcccccCCCCCCCeEEEeecC-ccchhh
Q 038397 806 QLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHITLELPWSADRAIQQFGRTHRSNQASAPEYRIIFTN-LGGERR 884 (1102)
Q Consensus 806 ~~Fm~G~K~VAIISeAaSTGISLhADrr~~NQRRRvHitLElpWsADkAIQqfGRTHRSNQvsaP~Y~~l~T~-l~GErR 884 (1102)
++|..| .|.|-++-|+=|+-..-...|..--=-.=|-.|+|-|...-+|..|||+|-+.- =..++++|. =.--++
T Consensus 476 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~--G~s~~~vs~eD~l~r~ 551 (844)
T 1tf5_A 476 EAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP--GITQFYLSMEDELMRR 551 (844)
T ss_dssp TTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC--EEEEEEEETTSSGGGS
T ss_pred HcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC--CeEEEEecHHHHHHHH
Confidence 456666 589999999999988754333322222345689999999999999999998763 234555552 122245
Q ss_pred hHHH-HHHHHhhcC
Q 038397 885 FASI-VAKRLESLG 897 (1102)
Q Consensus 885 FaS~-VAkRLeSLG 897 (1102)
|.+- +.+.++.||
T Consensus 552 f~~~~~~~~~~~~~ 565 (844)
T 1tf5_A 552 FGAERTMAMLDRFG 565 (844)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHhcC
Confidence 6654 556666665
No 271
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.66 E-value=17 Score=31.91 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=20.0
Q ss_pred CccceeecCCcceEEEeCCCcce---ecCCCCCC
Q 038397 13 NVGVQVRCAGCHIILTVGPGLTE---FICGTCNL 43 (1102)
Q Consensus 13 ~~~~~~~C~~C~a~l~~~pg~~~---~~Cp~C~~ 43 (1102)
+..-..||.-|+..+ |++. |.| .||.
T Consensus 11 ~~~~~~rC~~C~kk~----gL~~~egf~C-rCg~ 39 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKL----ELVQQELGSC-RCGY 39 (67)
T ss_dssp SCSCTTBCSSSCCBC----CHHHHHHHCC-SSSC
T ss_pred CCccCCcchhhCCee----cccccCceEe-cCCC
Confidence 444457899999976 5774 999 9996
No 272
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.60 E-value=74 Score=34.50 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=24.5
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEc
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISV 278 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~ 278 (1102)
+.=++.+-..|+||+-..+.+...--..|+| ++-|..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~r-VLLID~ 141 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQK-VLFIDA 141 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCc-EEEEEC
Confidence 4444556667999998877766555556765 766653
No 273
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=32.07 E-value=15 Score=36.35 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=21.6
Q ss_pred ceecCCCccceeeccCCCccccCCCCCccc
Q 038397 95 IQLPCANCKAILNVPHGLVRFSCPQCAVEL 124 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L 124 (1102)
.--.|..||+...-|.. .||.|+..-
T Consensus 46 ~~~rC~~CG~~~~PPr~----~Cp~C~s~~ 71 (145)
T 3irb_A 46 IGSKCSKCGRIFVPARS----YCEHCFVKI 71 (145)
T ss_dssp EEEECTTTCCEEESCCS----EETTTTEEC
T ss_pred EEEEeCCCCcEEcCchh----hCcCCCCCc
Confidence 44689999999988865 799999864
No 274
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=31.95 E-value=19 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=24.0
Q ss_pred HhhhcCCcceEEEE----eccccccccccc
Q 038397 805 KQLFMDGKKLVAII----SEAGSAGVSLQA 830 (1102)
Q Consensus 805 k~~Fm~G~K~VAII----SeAaSTGISLhA 830 (1102)
-+.|.+|+.+|+|- +++++.||-+..
T Consensus 347 l~~F~~G~~~VLVatas~TdvlarGIDip~ 376 (1104)
T 4ddu_A 347 FEDFKVGKINILIGVQAYYGKLTRGVDLPE 376 (1104)
T ss_dssp HHHHHHTSCSEEEEETTTHHHHCCSCCCTT
T ss_pred HHHHHCCCCCEEEEecCCCCeeEecCcCCC
Confidence 46899999999999 999999999886
No 275
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=30.19 E-value=29 Score=30.45 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.1
Q ss_pred ceecCCCccceeeccCCCc-cccCCCCCccccccc
Q 038397 95 IQLPCANCKAILNVPHGLV-RFSCPQCAVELAVDM 128 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp~~~~-~f~Cp~C~~~L~v~~ 128 (1102)
+.++|.+|+.++.|=.--. .-.|..||.-|+-+-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 5689999999988754433 459999999999865
No 276
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.06 E-value=2.3e+02 Score=30.37 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=30.0
Q ss_pred cchhhHHHHHHhhccccCCCCC-cceeEeecCCCCCcchhhHHHHHHHHhc-c-CceEEEEEcC
Q 038397 219 CLQIETLVYASQRHLQHLPNSA-RAGFFIGDGAGVGKGRTIAGLIWENWHH-G-RRKALWISVG 279 (1102)
Q Consensus 219 ~~Qle~v~ya~q~h~~~l~~g~-R~Gf~~gDg~GvGKGR~~AgiI~~n~l~-G-r~~~~w~s~s 279 (1102)
+.+++.+.-+..+. +..+. +.-+++|. .|+||+..+-.+.-+--.. | ....+|++.+
T Consensus 26 ~~e~~~l~~~l~~~---~~~~~~~~vli~G~-~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 26 EDQIRKIASILAPL---YREEKPNNIFIYGL-TGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp HHHHHHHHHSSGGG---GGTCCCCCEEEEEC-TTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred HHHHHHHHHHHHHH---HcCCCCCeEEEECC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 45566655444332 11122 33445565 8999998776554332221 1 3458888754
No 277
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=29.91 E-value=36 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.850 Sum_probs=18.7
Q ss_pred eecCCCccceeeccCCCccccCCCCCc
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAV 122 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~ 122 (1102)
.+.|.+||.. .+||- -||.||.
T Consensus 30 l~~c~~cG~~-~~pH~----vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGK-KLSHH----ICPNCGY 51 (60)
T ss_dssp CEECTTTCCE-ECTTB----CCTTTCB
T ss_pred ceECCCCCCE-eCCce----EcCCCCc
Confidence 3899999998 78876 8999994
No 278
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=29.64 E-value=21 Score=37.22 Aligned_cols=25 Identities=20% Similarity=0.529 Sum_probs=18.8
Q ss_pred eecCCcceEEEeCCC--cceecCCCCC
Q 038397 18 VRCAGCHIILTVGPG--LTEFICGTCN 42 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg--~~~~~Cp~C~ 42 (1102)
.+|..||..+.+... .+.|.||.|.
T Consensus 135 ~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 135 SSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp EECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred CcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 359999999844433 4799999999
No 279
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=29.53 E-value=18 Score=36.90 Aligned_cols=29 Identities=31% Similarity=0.747 Sum_probs=23.6
Q ss_pred ccceecCCCccceeeccCCCccccCCCCCcc
Q 038397 93 TKIQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 93 t~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
.++.-.|..||+.+ +|.+ .-+.||.||.-
T Consensus 137 Gvv~a~~~~~g~~m-~~~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 137 GVLRALCSNCKTEM-VREG-DILKCPECGRV 165 (179)
T ss_dssp EEEECBCTTTCCBC-EECS-SSEECSSSCCE
T ss_pred CEEEecccccCCce-EECC-CEEECCCCCCE
Confidence 45566899999998 6777 88999999964
No 280
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.41 E-value=28 Score=29.00 Aligned_cols=27 Identities=26% Similarity=0.703 Sum_probs=19.1
Q ss_pred ecCCCccceeeccC---------C-----C-ccccCCCCCcc
Q 038397 97 LPCANCKAILNVPH---------G-----L-VRFSCPQCAVE 123 (1102)
Q Consensus 97 ~~C~~C~A~~~vp~---------~-----~-~~f~Cp~C~~~ 123 (1102)
-.|..||-+-.-.. | + ..+.||.||++
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 67999998876322 2 1 24689999986
No 281
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=29.36 E-value=10 Score=31.14 Aligned_cols=35 Identities=23% Similarity=0.764 Sum_probs=26.7
Q ss_pred hhhhccccCCccccCCCCCCcccCCCCCCccccchh
Q 038397 674 KLLQCSCCGQLVHSGCLVPPITDVIPSDWSCHSCKE 709 (1102)
Q Consensus 674 kLL~cs~cgk~~H~~cL~PP~~di~~~dW~c~sCke 709 (1102)
.|+.|+.|..=+|..|+.-..... .+.|.|+.|++
T Consensus 17 ~MI~Cd~C~~W~H~~Cvgi~~~~~-~~~~~C~~C~~ 51 (52)
T 3o7a_A 17 PMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 51 (52)
T ss_dssp CEEECTTTCCEEETTTTTCCGGGC-CSSCCCHHHHT
T ss_pred CEEEcCCCCccccccccCCCcccC-CCcEECcCCCC
Confidence 478899999999999985443322 47899999873
No 282
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=29.20 E-value=18 Score=35.91 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=21.4
Q ss_pred cceecCCCccceeeccCCCccccCCCCCcc
Q 038397 94 KIQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
..--.|..||.+..-|.. .||.|+..
T Consensus 45 L~~~rC~~CG~~~fPPr~----~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPARS----YCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCS----EETTTTEE
T ss_pred EEEEEECCCCcEEeCCCC----CCCCCCCC
Confidence 445789999999877765 79999987
No 283
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=29.07 E-value=27 Score=29.37 Aligned_cols=28 Identities=29% Similarity=0.777 Sum_probs=20.0
Q ss_pred eecCCCccceeeccC---------C-----Cc-cccCCCCCcc
Q 038397 96 QLPCANCKAILNVPH---------G-----LV-RFSCPQCAVE 123 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~---------~-----~~-~f~Cp~C~~~ 123 (1102)
.-.|..||-+-.-.. | +. .+.||.||++
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 367999998876432 2 22 4689999986
No 284
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=27.83 E-value=29 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.563 Sum_probs=25.9
Q ss_pred cceecCCCccceeeccCCCccccCCCCCcc
Q 038397 94 KIQLPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
+..+.|-.|++..+++-..-...||.|+.-
T Consensus 35 ~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 35 TVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp EEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred EeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 446899999999999987777789999976
No 285
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.80 E-value=8.7 Score=35.27 Aligned_cols=46 Identities=30% Similarity=0.873 Sum_probs=31.5
Q ss_pred cccccCcHHHHhhhhhccccCCccccCCCCCC------------cccCCCCCCccccch
Q 038397 662 ICEICNSEEERKKLLQCSCCGQLVHSGCLVPP------------ITDVIPSDWSCHSCK 708 (1102)
Q Consensus 662 ~ce~cgsed~k~kLL~cs~cgk~~H~~cL~PP------------~~di~~~dW~c~sCk 708 (1102)
.|++|..-. ...++.|..|++-+|..||.++ ....+..-|+|+-|.
T Consensus 17 ~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 17 MCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred ccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 466655211 2347789999999999998764 122345679999996
No 286
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.38 E-value=34 Score=28.48 Aligned_cols=28 Identities=32% Similarity=0.793 Sum_probs=19.7
Q ss_pred eecCCCccceeeccC---------C-----Cc-cccCCCCCcc
Q 038397 96 QLPCANCKAILNVPH---------G-----LV-RFSCPQCAVE 123 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~---------~-----~~-~f~Cp~C~~~ 123 (1102)
...|..||-+-.-.. | +. .+.||.||++
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 357999998876432 2 22 4689999986
No 287
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.26 E-value=53 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=17.6
Q ss_pred cchHHHHHHHhccC-CCceEEeecchhcccc
Q 038397 338 RSRLQQLVQWCGSG-YDGLVIFDECHKAKNL 367 (1102)
Q Consensus 338 ~sRl~Ql~~W~g~d-fdgvivfDEcH~akn~ 367 (1102)
..|++++++.+... -..+|++||+|.+.+.
T Consensus 248 ~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~ 278 (854)
T 1qvr_A 248 EERLKAVIQEVVQSQGEVILFIDELHTVVGA 278 (854)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHhcc
Confidence 35788888877642 3468899999998654
No 288
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.04 E-value=11 Score=32.70 Aligned_cols=29 Identities=17% Similarity=0.537 Sum_probs=19.8
Q ss_pred ecCCCccceeecc----------CCC--ccccCCCCCcccc
Q 038397 97 LPCANCKAILNVP----------HGL--VRFSCPQCAVELA 125 (1102)
Q Consensus 97 ~~C~~C~A~~~vp----------~~~--~~f~Cp~C~~~L~ 125 (1102)
..|.-|+..+.-. ++. ..|.|++|+....
T Consensus 36 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~ 76 (95)
T 2yt9_A 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76 (95)
T ss_dssp EECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred CcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence 6788888766432 222 5799999997644
No 289
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=26.99 E-value=1.3e+02 Score=33.24 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHhccCCCceEEeecchhccccCCCCCCCchh-HHHHHH-HHhhh--CCCccEEEEecCCCCCCCccchhhhcc
Q 038397 341 LQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTR-TGEAVL-ELQAR--LPEARVVYCSATGASEPRNMGYMVRLG 415 (1102)
Q Consensus 341 l~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~-~g~avl-~LQ~~--lP~ARvvY~SATgasep~Nl~ym~RLG 415 (1102)
+..++......-.++|+|||.|.+......+....+. .-...+ .|... -+..+|+...||...+--+-+...|+.
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~ 243 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc
Confidence 4444554443445899999999986543221111111 111111 12211 135678777777443222224556654
No 290
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=26.87 E-value=53 Score=38.85 Aligned_cols=83 Identities=22% Similarity=0.240 Sum_probs=60.8
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccC---ceEEEEEcCCchhhhHHhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGR---RKALWISVGSDLKFDARRDLDD 292 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr---~~~~w~s~s~~L~~Da~RDl~d 292 (1102)
.|++.|.++|. | ++|. +++==|+|.||++++..-|.+-..++. .+.+.++.++..-..+++-+..
T Consensus 9 ~Ln~~Q~~av~-----~----~~~~---~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 9 SLNDKQREAVA-----A----PRSN---LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TCCHHHHHHHT-----C----CSSC---EEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh-----C----CCCC---EEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 58899999985 2 1222 455567999999999998887776643 5799999999998888888866
Q ss_pred hCCCcccccccCCCCCCcCCCCccccccceEEeehhhhh
Q 038397 293 VGATCIEVHALNKLPYSKLDSRSVGIREGVVFLTYSSLI 331 (1102)
Q Consensus 293 iG~~~i~v~~l~~~~~~~~~~~~~~~~~GvlF~TYs~L~ 331 (1102)
+-... ..++-+.|+.+|.
T Consensus 77 ~~~~~---------------------~~~~~v~Tfhs~~ 94 (647)
T 3lfu_A 77 LMGTS---------------------QGGMWVGTFHGLA 94 (647)
T ss_dssp HHCSC---------------------CTTCEEEEHHHHH
T ss_pred Hhccc---------------------cCCcEEEcHHHHH
Confidence 52110 1457788988885
No 291
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=26.61 E-value=25 Score=38.04 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=22.9
Q ss_pred cCCcceEEEeCCCcceecCCCCCC
Q 038397 20 CAGCHIILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 20 C~~C~a~l~~~pg~~~~~Cp~C~~ 43 (1102)
|+.||..+....+-....||.||.
T Consensus 110 C~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 110 CGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp CTTTCCBEEECSSSSCEEESSSSC
T ss_pred cccCCCcCccCCCceeeeCCCCCC
Confidence 999999999999999999999996
No 292
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=26.58 E-value=46 Score=30.26 Aligned_cols=29 Identities=24% Similarity=0.681 Sum_probs=21.6
Q ss_pred ceecCCCccceeecc---------CC-----Cc-cccCCCCCcc
Q 038397 95 IQLPCANCKAILNVP---------HG-----LV-RFSCPQCAVE 123 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp---------~~-----~~-~f~Cp~C~~~ 123 (1102)
....|..||-+-.-. +| +. .+.||.||++
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 368999999998742 22 22 4689999986
No 293
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.56 E-value=57 Score=39.00 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCC
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGS 280 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~ 280 (1102)
.|++.|.++|..+.+. .-+++--|+|.||+.++++|+..--..|.+ ++.+.-++
T Consensus 189 ~L~~~Q~~Av~~~~~~----------~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~-Vl~~ApT~ 242 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGH----------RLVVLTGGPGTGKSTTTKAVADLAESLGLE-VGLCAPTG 242 (574)
T ss_dssp TCCHHHHHHHHHHTTC----------SEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EEEEESSH
T ss_pred CCCHHHHHHHHHHHhC----------CEEEEEcCCCCCHHHHHHHHHHHHHhcCCe-EEEecCcH
Confidence 5889999999887632 234455679999999998887655556643 55554444
No 294
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.51 E-value=18 Score=29.60 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=23.2
Q ss_pred eecCCCccceeecc-------CCCccccCCCCCcccccc
Q 038397 96 QLPCANCKAILNVP-------HGLVRFSCPQCAVELAVD 127 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp-------~~~~~f~Cp~C~~~L~v~ 127 (1102)
...|..||..+.-. .+-..|.|++||......
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccC
Confidence 47899999864432 334679999999886553
No 295
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.38 E-value=15 Score=32.19 Aligned_cols=35 Identities=23% Similarity=0.660 Sum_probs=25.9
Q ss_pred hhhhccccC---CccccCCCCCCcccCCCCCCccccchhh
Q 038397 674 KLLQCSCCG---QLVHSGCLVPPITDVIPSDWSCHSCKEK 710 (1102)
Q Consensus 674 kLL~cs~cg---k~~H~~cL~PP~~di~~~dW~c~sCkek 710 (1102)
.|+.|+.|+ .-+|..|+-- ...+.+.|+|+.|..+
T Consensus 18 ~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 18 EMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHH
T ss_pred CEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCcc
Confidence 477888875 6789998752 2245689999999853
No 296
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.27 E-value=24 Score=39.54 Aligned_cols=32 Identities=16% Similarity=0.549 Sum_probs=26.0
Q ss_pred ccceeecCCcceE---EEeCCCcceecCCCCCCCC
Q 038397 14 VGVQVRCAGCHII---LTVGPGLTEFICGTCNLPQ 45 (1102)
Q Consensus 14 ~~~~~~C~~C~a~---l~~~pg~~~~~Cp~C~~~~ 45 (1102)
....+.|+.||.. +.+.+..-+..|..||.-.
T Consensus 18 ~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred ccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 4446679999994 8888888899999999743
No 297
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=25.88 E-value=27 Score=34.55 Aligned_cols=24 Identities=21% Similarity=0.610 Sum_probs=17.9
Q ss_pred ceeecCCcceEEEeCCCcceecCCCCCC
Q 038397 16 VQVRCAGCHIILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 16 ~~~~C~~C~a~l~~~pg~~~~~Cp~C~~ 43 (1102)
+-.||..||.....+. -.||.|+-
T Consensus 46 ~~~rC~~CG~~~~PPr----~~Cp~C~s 69 (145)
T 3irb_A 46 IGSKCSKCGRIFVPAR----SYCEHCFV 69 (145)
T ss_dssp EEEECTTTCCEEESCC----SEETTTTE
T ss_pred EEEEeCCCCcEEcCch----hhCcCCCC
Confidence 4567999998765543 35999995
No 298
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=25.49 E-value=49 Score=34.59 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=28.3
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEE
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWI 276 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~ 276 (1102)
|+.|-++|+||+-..+|++..--.+|.+-..|=
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 566999999999999999999889998866653
No 299
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.84 E-value=6.9 Score=34.82 Aligned_cols=38 Identities=18% Similarity=0.513 Sum_probs=27.0
Q ss_pred hhhhhccccCCccccCCCCCCccc-CCCCCCccccchhh
Q 038397 673 KKLLQCSCCGQLVHSGCLVPPITD-VIPSDWSCHSCKEK 710 (1102)
Q Consensus 673 ~kLL~cs~cgk~~H~~cL~PP~~d-i~~~dW~c~sCkek 710 (1102)
..|+.|+.|..=+|..|+--.... ...+.|.|+.|...
T Consensus 25 ~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 25 HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp SCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 457889999999999987432221 22468999999853
No 300
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=24.73 E-value=46 Score=33.81 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=28.9
Q ss_pred eeecCCcceEEEeCCCcceecCCCCCCCCCCCCCC
Q 038397 17 QVRCAGCHIILTVGPGLTEFICGTCNLPQMLPPEL 51 (1102)
Q Consensus 17 ~~~C~~C~a~l~~~pg~~~~~Cp~C~~~~~l~p~~ 51 (1102)
.-.|+|-|+.|...++-..|.||+-|-.-.+..+.
T Consensus 105 ~~~CtH~G~~l~~~~~~~~~~CP~Hgs~Fd~~G~~ 139 (179)
T 1vf5_D 105 NAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGRV 139 (179)
T ss_dssp BCBCTTTSCBCCBCSSSSSEECTTTCCEECSSSCC
T ss_pred eCccCCCCCCCcccCCCCEEECCCCCCEECCCCcE
Confidence 44699999999988888899999999877765444
No 301
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.08 E-value=36 Score=30.02 Aligned_cols=28 Identities=36% Similarity=0.872 Sum_probs=20.3
Q ss_pred eecCCCccceeec---------cCC-----Cc-cccCCCCCcc
Q 038397 96 QLPCANCKAILNV---------PHG-----LV-RFSCPQCAVE 123 (1102)
Q Consensus 96 ~~~C~~C~A~~~v---------p~~-----~~-~f~Cp~C~~~ 123 (1102)
...|..||-+-.- |+| +. .+.||.||++
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 4789999998763 222 22 4689999997
No 302
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=24.07 E-value=15 Score=34.65 Aligned_cols=37 Identities=38% Similarity=0.995 Sum_probs=27.9
Q ss_pred hhhhhccccCCccccCCCCCCcccC----CCCCCccccchh
Q 038397 673 KKLLQCSCCGQLVHSGCLVPPITDV----IPSDWSCHSCKE 709 (1102)
Q Consensus 673 ~kLL~cs~cgk~~H~~cL~PP~~di----~~~dW~c~sCke 709 (1102)
.+|+.|+.|+..+|..|+.++...+ ..+.|.|+.|..
T Consensus 73 ~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 73 KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp GSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3477899999999999987764332 334599999973
No 303
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.07 E-value=1.3e+02 Score=32.35 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=25.4
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHhccCceEEEEEc
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISV 278 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~ 278 (1102)
+.=.+.+-..|+||+-..+.+...--..|++ ++-|..
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~r-VLLID~ 129 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKR-VLLIDC 129 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCC-EEEEEC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCC-EEEEec
Confidence 4444556667999998887776655566765 776654
No 304
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.78 E-value=43 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCCCCCCCCccceeecCCcceEEEeCCCcceecCCCCCC
Q 038397 5 PVPPPPPPNVGVQVRCAGCHIILTVGPGLTEFICGTCNL 43 (1102)
Q Consensus 5 ~~~~~~~~~~~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~ 43 (1102)
|+.-+.+++....-||.-|+..+-+. +.|.|- ||.
T Consensus 13 ~~~~~~~~~k~~~~rC~~C~kkvgl~---~~f~Cr-Cg~ 47 (85)
T 1wff_A 13 PVKAPLQTKKKIMKHCFLCGKKTGLA---TSFECR-CGN 47 (85)
T ss_dssp CCCCCCCCCCCCCCBCSSSCCBCSSS---SCEECT-TCC
T ss_pred ceecccccCcccCccchhhCCeeccc---CCeEcC-CCC
Confidence 33333333445557899999987542 479995 985
No 305
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=23.46 E-value=30 Score=31.51 Aligned_cols=21 Identities=29% Similarity=0.793 Sum_probs=17.4
Q ss_pred ecCCCccceeeccCCCccccCCCCCcc
Q 038397 97 LPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 97 ~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
.-|.+|+.+++.. .||.|+..
T Consensus 24 rAC~~C~~v~~~d------~CPnCgs~ 44 (81)
T 3p8b_A 24 KACRHCHYITSED------RCPVCGSR 44 (81)
T ss_dssp EEETTTCBEESSS------SCTTTCCC
T ss_pred HHHhhCCCccCCC------CCCCCCCC
Confidence 4699999998643 69999986
No 306
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.39 E-value=3.4e+02 Score=28.21 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=49.1
Q ss_pred CceEEeecchhccccCCCCCCCchhHH--HHHHHHhhhC---------CCccEEEEec--CCCCCCCcc--chhhhcccc
Q 038397 353 DGLVIFDECHKAKNLVPEAGSQPTRTG--EAVLELQARL---------PEARVVYCSA--TGASEPRNM--GYMVRLGLW 417 (1102)
Q Consensus 353 dgvivfDEcH~akn~~~~~~~~~s~~g--~avl~LQ~~l---------P~ARvvY~SA--Tgasep~Nl--~ym~RLGLW 417 (1102)
.+||+|||+|++.......+...++.+ ...+.+-+.. +..+++...+ .....|.++ +..+|+.+.
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~ 196 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 196 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEE
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCce
Confidence 479999999998765432232222222 1222222211 2223333333 223345444 367887642
Q ss_pred CCCCCCCCHHHHHHHHhccChhHHHHHHHHHHhcc
Q 038397 418 GAGTCFKDFQIFLGALDKGGVGALELVAMDMKARG 452 (1102)
Q Consensus 418 g~gt~f~~~~~f~~a~~~gGv~amE~va~dlK~~G 452 (1102)
= ..+-++.++...-++.+--...+-+...++..|
T Consensus 197 i-~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 230 (310)
T 1ofh_A 197 V-ELTALSAADFERILTEPHASLTEQYKALMATEG 230 (310)
T ss_dssp E-ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTT
T ss_pred E-EcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 1 123347788888887654344444444444444
No 307
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=23.33 E-value=36 Score=42.85 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCC-CcccccccCCCCCCcCCCCccccccc--eEEe
Q 038397 249 GAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGA-TCIEVHALNKLPYSKLDSRSVGIREG--VVFL 325 (1102)
Q Consensus 249 g~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~-~~i~v~~l~~~~~~~~~~~~~~~~~G--vlF~ 325 (1102)
.||-||+-..+--++.|.+.|+. ++-++.+..|-.--...+..++. ..+.|..+ +|..+...-....| |+..
T Consensus 95 ~TGsGKTlaf~LP~l~~~l~g~~-vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i----~GG~~~~~r~~~~~~dIvvg 169 (853)
T 2fsf_A 95 RTGEGKTLTATLPAYLNALTGKG-VHVVTVNDYLAQRDAENNRPLFEFLGLTVGIN----LPGMPAPAKREAYAADITYG 169 (853)
T ss_dssp CTTSCHHHHHHHHHHHHHTTSSC-CEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC----CTTCCHHHHHHHHHSSEEEE
T ss_pred cCCchHHHHHHHHHHHHHHcCCc-EEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEE----eCCCCHHHHHHhcCCCEEEE
Q ss_pred ehhhh----------hhccccccchHHHHHHHhccCCCceEEeecchhc
Q 038397 326 TYSSL----------IASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKA 364 (1102)
Q Consensus 326 TYs~L----------~~~~~~~~sRl~Ql~~W~g~dfdgvivfDEcH~a 364 (1102)
|=..| .+.......++ .++|+||+|.+
T Consensus 170 Tpgrl~fDyLrd~~~~~~~~~~~~~l------------~~lVlDEaD~m 206 (853)
T 2fsf_A 170 TNNEYGFDYLRDNMAFSPEERVQRKL------------HYALVDEVDSI 206 (853)
T ss_dssp EHHHHHHHHHHHTTCSSGGGCCCCSC------------CEEEESCHHHH
T ss_pred CCchhhHHHHHhhhhccHhHhcccCC------------cEEEECchHHH
No 308
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=23.10 E-value=43 Score=31.56 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=26.2
Q ss_pred cceecCCCccceeeccCCCccc--cCCCCCcccc
Q 038397 94 KIQLPCANCKAILNVPHGLVRF--SCPQCAVELA 125 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~~f--~Cp~C~~~L~ 125 (1102)
.+++-|.+||+.-.+|...... .|.-|+.++.
T Consensus 3 ~~~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~ 36 (148)
T 3p2a_A 3 AMNTVCTACMATNRLPEERIDDGAKCGRCGHSLF 36 (148)
T ss_dssp EEEEECTTTCCEEEEESSCSCSCCBCTTTCCBTT
T ss_pred ccEEECcccccccCCCCcccccCCcchhcCCccc
Confidence 4578899999999899886654 7999999864
No 309
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.02 E-value=30 Score=37.45 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.8
Q ss_pred ecCCCccceeeccCCCccccCCCCCcc
Q 038397 97 LPCANCKAILNVPHGLVRFSCPQCAVE 123 (1102)
Q Consensus 97 ~~C~~C~A~~~vp~~~~~f~Cp~C~~~ 123 (1102)
--|..||+.+....+-.+..||-||..
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CccccCCCcCccCCCceeeeCCCCCCE
Confidence 579999999988888889999999864
No 310
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=22.96 E-value=22 Score=39.47 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=23.1
Q ss_pred CccceeecCCcceEEEeCCCc--ceecCCCCCCCCCC
Q 038397 13 NVGVQVRCAGCHIILTVGPGL--TEFICGTCNLPQML 47 (1102)
Q Consensus 13 ~~~~~~~C~~C~a~l~~~pg~--~~~~Cp~C~~~~~l 47 (1102)
|.....+|++|+..+.-+ -+ -...||.|++...+
T Consensus 20 ~~~l~~kc~~~~~~~~~~-~l~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 20 PEGVWTKCDSCGQVLYRA-ELERNLEVCPKCDHHMRM 55 (304)
T ss_dssp ---CEECCTTTCCCEETT-HHHHTTTBCTTTCCBCCC
T ss_pred CHHHHHhhhhccchhhHH-HHHHHhCCCCCCCCCCCC
Confidence 566788999999977644 32 34799999985443
No 311
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=22.92 E-value=28 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=26.2
Q ss_pred eecCCCccceeeccCC----CccccCCCCCcccccc
Q 038397 96 QLPCANCKAILNVPHG----LVRFSCPQCAVELAVD 127 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~----~~~f~Cp~C~~~L~v~ 127 (1102)
..-|..||.+|.++++ ...|.|+.|+..-.++
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 3679999999999854 4589999999876654
No 312
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=22.84 E-value=41 Score=40.49 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=20.8
Q ss_pred eeecCCcceEEE----eCCCcceecCCCCCCCCCC
Q 038397 17 QVRCAGCHIILT----VGPGLTEFICGTCNLPQML 47 (1102)
Q Consensus 17 ~~~C~~C~a~l~----~~pg~~~~~Cp~C~~~~~l 47 (1102)
...|.+|+..+. -.++.++-.||+||.....
T Consensus 34 ~~~c~~c~~~~~~~~~~~~~~~~~~c~~c~~~~~~ 68 (681)
T 2pzi_A 34 KRFCWNCGRPVGRSDSETKGASEGWCPYCGSPYSF 68 (681)
T ss_dssp GCBCTTTCCBCSCC-----CCSEEECTTTCCEEEC
T ss_pred cccCccCCCcCCCcccCCCcccCCcCCCCCCcccc
Confidence 456999998863 3455667789999975443
No 313
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=22.79 E-value=84 Score=32.85 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=31.4
Q ss_pred hHHHHHHHhccCCCceEEeecchhccccCCCCCCCchhHHHHHHHHhhhC--CCccEEEEecCC
Q 038397 340 RLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARL--PEARVVYCSATG 401 (1102)
Q Consensus 340 Rl~Ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~l--P~ARvvY~SATg 401 (1102)
.+.++++.....-.++||+||+|.+.+....+.......-.+..++-+.+ +..+|+...+|.
T Consensus 112 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn 175 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES
T ss_pred HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecC
Confidence 34455555443446799999999985443211111112222333333332 345666666664
No 314
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=22.73 E-value=45 Score=30.34 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=27.5
Q ss_pred cceecCCCccceeeccCCCc-cccCCCCCccccccc
Q 038397 94 KIQLPCANCKAILNVPHGLV-RFSCPQCAVELAVDM 128 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~-~f~Cp~C~~~L~v~~ 128 (1102)
-+.+.|.+|+.++.|=.--. --.|..||.-|+-+-
T Consensus 30 Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PT 65 (81)
T 2xzm_6 30 FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPT 65 (81)
T ss_dssp EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEEEC
T ss_pred EEEeECCCCCCeeEEEecCccEEEccCCCCEEeecC
Confidence 46789999999988754433 449999999998764
No 315
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=22.68 E-value=1.3e+02 Score=30.40 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=35.6
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCCchhhhHHhhhhhhCCC
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAT 296 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~~L~~Da~RDl~diG~~ 296 (1102)
.+++=.+|+||+-..--++++...++..+++++|.... ..+..+.+..+|..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~~~ 84 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFGWD 84 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTTCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcCCC
Confidence 34455599999977777777778887777999987644 33444555555543
No 316
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.66 E-value=37 Score=32.30 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=27.0
Q ss_pred eecCCCccceeeccCCC----ccccCCCCCccccccc
Q 038397 96 QLPCANCKAILNVPHGL----VRFSCPQCAVELAVDM 128 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~----~~f~Cp~C~~~L~v~~ 128 (1102)
..-|..||.+|.+..+. .+|.|+-|+..-.++.
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 46799999999988753 3899999999877754
No 317
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=22.62 E-value=46 Score=35.01 Aligned_cols=29 Identities=24% Similarity=0.757 Sum_probs=22.7
Q ss_pred ccceeecCCcceEEEeCCCc----------ceecCCCCCC
Q 038397 14 VGVQVRCAGCHIILTVGPGL----------TEFICGTCNL 43 (1102)
Q Consensus 14 ~~~~~~C~~C~a~l~~~pg~----------~~~~Cp~C~~ 43 (1102)
+...++|++|++...++ |+ +.+.||.|+.
T Consensus 19 ~~l~l~Cp~C~~~~~F~-gv~~~~~~~~~~sg~~C~~C~~ 57 (206)
T 3flo_B 19 VTLELSCPSCDKRFPFG-GIVSSNYYRVSYNGLQCKHCEQ 57 (206)
T ss_dssp CCEEEECTTTCCEEEEC-SSSCCSSEEEETTEEEETTTCC
T ss_pred ceeEEECCCCCCccCCC-CcccCCCcccccccccCCCCCC
Confidence 55678999999998877 44 2567999985
No 318
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.57 E-value=52 Score=30.23 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=27.3
Q ss_pred cceecCCCccceeeccCCCc-cccCCCCCccccccc
Q 038397 94 KIQLPCANCKAILNVPHGLV-RFSCPQCAVELAVDM 128 (1102)
Q Consensus 94 ~~~~~C~~C~A~~~vp~~~~-~f~Cp~C~~~L~v~~ 128 (1102)
-+.+.|.+|+.++.|=.--. --.|.-||.-|+-+-
T Consensus 34 Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PT 69 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPT 69 (86)
T ss_dssp EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCC
T ss_pred EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecCC
Confidence 35699999999988754433 459999999998764
No 319
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.35 E-value=1.7e+02 Score=30.78 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=11.0
Q ss_pred CceEEeecchhcc
Q 038397 353 DGLVIFDECHKAK 365 (1102)
Q Consensus 353 dgvivfDEcH~ak 365 (1102)
..|||+||+|.+.
T Consensus 108 ~~viiiDe~~~l~ 120 (323)
T 1sxj_B 108 HKIVILDEADSMT 120 (323)
T ss_dssp CEEEEEESGGGSC
T ss_pred ceEEEEECcccCC
Confidence 3599999999975
No 320
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=22.32 E-value=1.1e+02 Score=34.96 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=45.0
Q ss_pred ceEEeecchhccccCCCCCCCchhHHHHHHHHhhhCCCccEEEEecC-------CCCC----CCccc--hhhhccccCCC
Q 038397 354 GLVIFDECHKAKNLVPEAGSQPTRTGEAVLELQARLPEARVVYCSAT-------GASE----PRNMG--YMVRLGLWGAG 420 (1102)
Q Consensus 354 gvivfDEcH~akn~~~~~~~~~s~~g~avl~LQ~~lP~ARvvY~SAT-------gase----p~Nl~--ym~RLGLWg~g 420 (1102)
+|+|+||+|++- ...-.+.++.-+.-|.- + +.=+| |+++ |.+|- ..+|.++| .
T Consensus 297 ~VliIDEa~~l~----------~~a~~aLlk~lEe~~~~-~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~--~ 362 (456)
T 2c9o_A 297 GVLFVDEVHMLD----------IECFTYLHRALESSIAP-I-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII--R 362 (456)
T ss_dssp CEEEEESGGGCB----------HHHHHHHHHHTTSTTCC-E-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEE--E
T ss_pred eEEEEechhhcC----------HHHHHHHHHHhhccCCC-E-EEEecCCccccccccccccccccCChhHHhhccee--e
Confidence 799999999984 33455556665654444 4 33233 3465 66665 78999998 4
Q ss_pred CCCCCHHHHHHHHhc
Q 038397 421 TCFKDFQIFLGALDK 435 (1102)
Q Consensus 421 t~f~~~~~f~~a~~~ 435 (1102)
++..+.++..+.++.
T Consensus 363 ~~~~~~~e~~~iL~~ 377 (456)
T 2c9o_A 363 TMLYTPQEMKQIIKI 377 (456)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 556678887776654
No 321
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.15 E-value=4.5 Score=35.08 Aligned_cols=49 Identities=24% Similarity=0.646 Sum_probs=30.9
Q ss_pred cccccccCcH-HHHhhhhhcc-ccCCccccCCCCCCc------ccCCCCCCccccch
Q 038397 660 FQICEICNSE-EERKKLLQCS-CCGQLVHSGCLVPPI------TDVIPSDWSCHSCK 708 (1102)
Q Consensus 660 f~~ce~cgse-d~k~kLL~cs-~cgk~~H~~cL~PP~------~di~~~dW~c~sCk 708 (1102)
...|-+|... +....+..|+ .|.+-+|..|.-=.. ...+...|.|+.|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3456666654 2334577899 999999998852111 11245579898886
No 322
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=22.07 E-value=2.4e+02 Score=27.84 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=22.1
Q ss_pred eEeecCCCCCcchhhHHHHHHHHhccCceEEEEEcCC
Q 038397 244 FFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGS 280 (1102)
Q Consensus 244 f~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~s~s~ 280 (1102)
.++|. .|+||+-.+--++. ..|. +++|++...
T Consensus 24 ~i~G~-~GsGKTtl~~~l~~---~~~~-~v~~i~~~~ 55 (220)
T 2cvh_A 24 QVYGP-YASGKTTLALQTGL---LSGK-KVAYVDTEG 55 (220)
T ss_dssp EEECS-TTSSHHHHHHHHHH---HHCS-EEEEEESSC
T ss_pred EEECC-CCCCHHHHHHHHHH---HcCC-cEEEEECCC
Confidence 34455 99999976655554 4554 599999766
No 323
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=21.54 E-value=33 Score=32.21 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=22.4
Q ss_pred eecCCcceEEEeCCC---------------------------cceecCCCCCCC
Q 038397 18 VRCAGCHIILTVGPG---------------------------LTEFICGTCNLP 44 (1102)
Q Consensus 18 ~~C~~C~a~l~~~pg---------------------------~~~~~Cp~C~~~ 44 (1102)
+.|+-|+..|.+... -.+|.|+.|+..
T Consensus 9 LaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~ 62 (97)
T 2k5r_A 9 LCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQV 62 (97)
T ss_dssp CCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEE
T ss_pred eECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCC
Confidence 579999999988765 568999999864
No 324
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.43 E-value=47 Score=30.57 Aligned_cols=29 Identities=24% Similarity=0.785 Sum_probs=20.8
Q ss_pred ceecCCCccceeecc---------CC-----Cc-cccCCCCCcc
Q 038397 95 IQLPCANCKAILNVP---------HG-----LV-RFSCPQCAVE 123 (1102)
Q Consensus 95 ~~~~C~~C~A~~~vp---------~~-----~~-~f~Cp~C~~~ 123 (1102)
....|..||-+-.-. +| +. .+.||.||++
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 358999999887632 22 22 4689999986
No 325
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=21.31 E-value=66 Score=34.24 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=30.0
Q ss_pred cceeEeecCCCCCcchhhHHHHHHHHhccCceEEEE
Q 038397 241 RAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWI 276 (1102)
Q Consensus 241 R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~ 276 (1102)
+.=|+.|-++|+||+-..+|++.---.+|.+-..|=
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 344667999999999999999998889999866663
No 326
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=21.25 E-value=42 Score=28.95 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=19.6
Q ss_pred eecCCCccceeeccCCCccccCCCCCccccc
Q 038397 96 QLPCANCKAILNVPHGLVRFSCPQCAVELAV 126 (1102)
Q Consensus 96 ~~~C~~C~A~~~vp~~~~~f~Cp~C~~~L~v 126 (1102)
.-.|.+||.-+- .-.||.||.+..+
T Consensus 5 mr~C~~Cg~YTL------k~~CP~CG~~t~~ 29 (60)
T 2aus_D 5 IRKCPKCGRYTL------KETCPVCGEKTKV 29 (60)
T ss_dssp CEECTTTCCEES------SSBCTTTCSBCEE
T ss_pred ceECCCCCCEEc------cccCcCCCCccCC
Confidence 468999987654 4479999999776
No 327
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=20.91 E-value=36 Score=42.23 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=25.3
Q ss_pred ecCCCccceeec----cCCCccccCCCCCccccccccc
Q 038397 97 LPCANCKAILNV----PHGLVRFSCPQCAVELAVDMSK 130 (1102)
Q Consensus 97 ~~C~~C~A~~~v----p~~~~~f~Cp~C~~~L~v~~~~ 130 (1102)
+.|.+|+|.+|- ..+ .+|.|++|+..=.++..+
T Consensus 86 ~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~~y 122 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEEF 122 (751)
T ss_dssp CBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCGGG
T ss_pred CcccCccCEeCCceEEecC-CEEEcccccCCCCCCHHH
Confidence 899999999873 345 689999999775554433
No 328
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=20.69 E-value=40 Score=33.47 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=18.8
Q ss_pred cceeecCCcceEEEeCCCcceecCCCCCCC
Q 038397 15 GVQVRCAGCHIILTVGPGLTEFICGTCNLP 44 (1102)
Q Consensus 15 ~~~~~C~~C~a~l~~~pg~~~~~Cp~C~~~ 44 (1102)
.+-.||..||... ++|-. .||.|+-.
T Consensus 45 L~~~rC~~CG~~~-fPPr~---~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIF-VPARS---YCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEE-ESCCS---EETTTTEE
T ss_pred EEEEEECCCCcEE-eCCCC---CCCCCCCC
Confidence 3456799999875 55543 69999964
No 329
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.69 E-value=48 Score=27.90 Aligned_cols=27 Identities=30% Similarity=0.773 Sum_probs=19.4
Q ss_pred ecCCCccceeec---------cCC-----Cc-cccCCCCCcc
Q 038397 97 LPCANCKAILNV---------PHG-----LV-RFSCPQCAVE 123 (1102)
Q Consensus 97 ~~C~~C~A~~~v---------p~~-----~~-~f~Cp~C~~~ 123 (1102)
..|..||-+-.- ++| |. .+.||.||++
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 579999988763 222 22 4689999987
No 330
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.29 E-value=1.6e+02 Score=36.56 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=30.0
Q ss_pred cchhhHHHHHHhhccccCCC--CCcceeEeecCCCCCcchhhHHHHHHHHhccCceEEEE
Q 038397 219 CLQIETLVYASQRHLQHLPN--SARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWI 276 (1102)
Q Consensus 219 ~~Qle~v~ya~q~h~~~l~~--g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~Gr~~~~w~ 276 (1102)
+..++.|.++..+...-+.+ .....|++---+|+||+-.+ -.|.....+.....+.+
T Consensus 564 ~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA-~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 564 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA-KTLAATLFDTEEAMIRI 622 (854)
T ss_dssp HHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH-HHHHHHHHSSGGGEEEE
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH-HHHHHHhcCCCCcEEEE
Confidence 45667777777765432222 11234555444999998544 44444443323334444
No 331
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=20.06 E-value=50 Score=39.73 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=49.1
Q ss_pred CcccchhhHHHHHHhhccccCCCCCcceeEeecCCCCCcchhhHHHHHHHHhc-c--CceEEEEEcCCchhhhHHhhhhh
Q 038397 216 SLSCLQIETLVYASQRHLQHLPNSARAGFFIGDGAGVGKGRTIAGLIWENWHH-G--RRKALWISVGSDLKFDARRDLDD 292 (1102)
Q Consensus 216 ~LS~~Qle~v~ya~q~h~~~l~~g~R~Gf~~gDg~GvGKGR~~AgiI~~n~l~-G--r~~~~w~s~s~~L~~Da~RDl~d 292 (1102)
.|++.|.++|.+. +| -+++-=|+|.||++++..-|.+-..+ | ..+.+.+|-++..-..++.-+..
T Consensus 2 ~L~~~Q~~av~~~---------~~---~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEFV---------TG---PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHCC---------SS---EEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC---------CC---CEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3789999997642 11 24555689999999999877766654 2 36799999999888888877765
Q ss_pred h
Q 038397 293 V 293 (1102)
Q Consensus 293 i 293 (1102)
+
T Consensus 70 ~ 70 (673)
T 1uaa_A 70 T 70 (673)
T ss_dssp H
T ss_pred H
Confidence 4
Done!