BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038398
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSN 549
IQ NVR ++L NK+ ++S +L L L+ N L+ + F + +L+ +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 550 NHLLWKLPSGI-STLVSLEHLDLSSTAITHLPIEL-QKLVNLKCLNLEYMNNLNQFPRLV 607
N L LP G+ L +L +L+L+ + LP + KL NL L+L Y N L P V
Sbjct: 119 NQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGV 176
Query: 608 ISAFSKLQVLRMF 620
++L+ LR++
Sbjct: 177 FDKLTQLKDLRLY 189
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 518 LLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGI-STLVSLEHLDLSSTAI 576
L L+L N L+ + F + SL N+S N L LP+G+ L L+ L L++ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL 112
Query: 577 THLPIEL-QKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621
LP + KL LK L L Y N L P V + LQ + + D
Sbjct: 113 QSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYIWLHD 157
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSN 549
IQ NVR ++L NK+ ++S +L L L+ N L+ + F + +L+ +
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 550 NHLLWKLPSGI-STLVSLEHLDLSSTAITHLPIEL-QKLVNLKCLNLEYMNNLNQFPRLV 607
N L LP G+ L +L +L L + LP + KL NL L+L+ N L P V
Sbjct: 119 NQ-LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGV 176
Query: 608 ISAFSKLQVLRMFD 621
++L+ L + D
Sbjct: 177 FDKLTQLKQLSLND 190
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 453 KMHDVIRDMVLWIACKIEKEKENFLVHAGLGLTEAPE--IQNWRNVRRMSLMKNKIENLS 510
K+HD I+ E +L+ G L P N++ + L++N++++L
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 511 ET--PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGI-STLVSLE 567
+ +L L+L N L+ F + +L ++ NN L LP G+ L L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQLK 184
Query: 568 HLDLSSTAITHLP 580
L L+ + +P
Sbjct: 185 QLSLNDNQLKSVP 197
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 495 NVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552
+ +++ L NK+ +L L L+L+DN L+ F+ + +L +++N
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK- 96
Query: 553 LWKLPSGI-STLVSLEHLDLSSTAITHLPIEL-QKLVNLKCLNLEYMNNLNQFPRLVISA 610
L LP G+ LV+L L L + LP + L L L+L Y N L P+ V
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDK 155
Query: 611 FSKLQVLRMFD 621
+ L+ LR+++
Sbjct: 156 LTSLKELRLYN 166
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 64/240 (26%)
Query: 493 WRNVRRMSLMKNKIENLSETP-----TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNM 547
++NV ++++ + +LS P P L +L +S+N+L+ DD FQ+ SL+ +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 548 SNNHLL----------------WKLPSGISTLVSLEHLDLSSTAITHL--PIELQKLVNL 589
S+N L + L S ++ +++E LD S +I + P+ V L
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN----VEL 234
Query: 590 KCLNLEYMN------------------NLNQFPRLVISAFSKLQVL-RMF---------D 621
L L++ N + N+ +++ F K+Q L R++ +
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 622 CGGSKIERLKINVLFGGHQFLVE---------ELMGMKHLMVLTITLKSWQALKELLISQ 672
G I LK+ L H VE E + + H ++T+ L + LK L +S
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 485 TEAPEIQNWRNVRRMSLMKNKIE--NLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSL 542
E N N+R + L N+++ L +L L +S+N + + D FQ + +L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 543 RVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLN 601
+ + +N L++ S L SLE L L +T +P E L L L L L ++ N+N
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NIN 189
Query: 602 QFPRLVISAFSKLQVLRM 619
+L+VL +
Sbjct: 190 AIRDYSFKRLYRLKVLEI 207
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 521 LFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHL- 579
L+L DN+L+ DD F+ + +L + N + L SL+ L L + H+
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 580 PIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621
P + L L L L + NNL+ P ++ LQ LR+ D
Sbjct: 193 PHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRLND 233
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 521 LFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHL- 579
L+L DN+L+ DD F+ + +L + N + L SL+ L L + H+
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 580 PIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621
P + L L L L + NNL+ P ++ LQ LR+ D
Sbjct: 194 PHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRLND 234
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 64/240 (26%)
Query: 493 WRNVRRMSLMKNKIENLSETP-----TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNM 547
++NV ++++ + +LS P P L +L +S+N+L+ DD FQ+ SL+ +
Sbjct: 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172
Query: 548 SNNHLL----------------WKLPSGISTLVSLEHLDLSSTAITHL--PIELQKLVNL 589
S+N L + L S ++ +++E LD S +I + P+ V L
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN----VEL 228
Query: 590 KCLNLEYMN------------------NLNQFPRLVISAFSKLQVL-RMF---------D 621
L L++ N + N+ +++ F K+Q L R++ +
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 622 CGGSKIERLKINVLFGGHQFLVE---------ELMGMKHLMVLTITLKSWQALKELLISQ 672
G I LK+ L H VE E + + H ++T+ L + LK L +S
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 507 ENLSETPT-CPHLLS-LFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLV 564
+ L+E PT P ++ + L N++K+ F LR ++SNN + P L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 565 SLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGG 624
SL L L IT LP + L + N N+ L + AF L L +
Sbjct: 81 SLNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYD 137
Query: 625 SKIERL 630
+K++ +
Sbjct: 138 NKLQTI 143
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 79/202 (39%), Gaps = 43/202 (21%)
Query: 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575
P L L +N + D F+++ +L + NN + P + LV LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 576 ITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL 635
+ LP ++ K LQ LR+ + ++I +++ +V
Sbjct: 112 LKELPEKMPK---------------------------TLQELRVHE---NEITKVRKSVF 141
Query: 636 FGGHQFLVEELMGMKHLMVLTITLKSWQALKEL-----------LISQELQRSTQSLFLR 684
G +Q +V EL G L I ++Q +K+L I Q L S L L
Sbjct: 142 NGLNQMIVVEL-GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 685 CFNDSKSLDIFCLAGLRNLNKL 706
N +D L GL NL KL
Sbjct: 201 G-NKITKVDAASLKGLNNLAKL 221
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 79/202 (39%), Gaps = 43/202 (21%)
Query: 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575
P L L +N + D F+++ +L + NN + P + LV LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 576 ITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL 635
+ LP ++ K LQ LR+ + ++I +++ +V
Sbjct: 112 LKELPEKMPK---------------------------TLQELRVHE---NEITKVRKSVF 141
Query: 636 FGGHQFLVEELMGMKHLMVLTITLKSWQALKEL-----------LISQELQRSTQSLFLR 684
G +Q +V EL G L I ++Q +K+L I Q L S L L
Sbjct: 142 NGLNQMIVVEL-GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 685 CFNDSKSLDIFCLAGLRNLNKL 706
N +D L GL NL KL
Sbjct: 201 G-NKITKVDAASLKGLNNLAKL 221
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 525 DNSLKMSTDDFFQSMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSSTAITHLPIEL 583
++ L++ D F ++P L + N+LL+ P L +L++L +S+T I HLP ++
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DV 122
Query: 584 QKLVNLKCLNLEYMNNLN 601
K+ +L+ + L+ +N+N
Sbjct: 123 HKIHSLQKVLLDIQDNIN 140
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 525 DNSLKMSTDDFFQSMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSSTAITHLPIEL 583
++ L++ D F ++P L + N+LL+ P L +L++L +S+T I HLP ++
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DV 122
Query: 584 QKLVNLKCLNLEYMNNLN 601
K+ +L+ + L+ +N+N
Sbjct: 123 HKIHSLQKVLLDIQDNIN 140
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 507 ENLSETPT-CPHLLS-LFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLV 564
+ L+E PT P ++ + L N++K+ F LR ++SNN + P L
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 565 SLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGG 624
SL L L IT LP + L + N N+ L + AF L L +
Sbjct: 81 SLNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137
Query: 625 SKIERL 630
+K++ +
Sbjct: 138 NKLQTI 143
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 306 PDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLR 350
D+PE A S+ +EC G PL + IG + + P W Y ++ L+
Sbjct: 310 ADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 352
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 307 DIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLR 350
D+PE A S+ +EC G PL + IG + + P W Y ++ L+
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQ 346
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSL 542
G+T IQ N+ + L N+I +L+ + L LS N LK + + S+
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQSI 115
Query: 543 RVFNMSNNHLLWKLP-SGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLN 601
+ ++++ + P +G+S L L +LDL+ IT++ L L NL+ L++ N +N
Sbjct: 116 KTLDLTSTQITDVTPLAGLSNLQVL-YLDLNQ--ITNIS-PLAGLTNLQYLSIGN-NQVN 170
Query: 602 QFPRLVISAFSKLQVLRMFDCGGSKIERLK-----INVLFGGHQFL-VEELMGMKHLMVL 655
L + SKL LR D S I L I V +Q V L + +L ++
Sbjct: 171 DLTPL--ANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNLFIV 228
Query: 656 TIT 658
T+T
Sbjct: 229 TLT 231
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 539 MPSLRVFNMS--------------NNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQ 584
+ +L++FN+S N + L +LP+ I L +L LDLS +T LP EL
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Query: 585 KLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL 635
C L+Y + + F L L+ G+ +E+ + +L
Sbjct: 291 -----SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 521 LFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHL- 579
L+L DN+L+ D+ F+ + +L + N + L SL+ L L + +
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 580 PIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621
P + L L L L + NNL+ P V+ LQ LR+ D
Sbjct: 193 PHAFRDLGRLMTLYL-FANNLSMLPAEVLVPLRSLQYLRLND 233
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575
P+L L LS N L + F + +L V + NNH++ + + L+ L LS
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 576 ITHLPIEL----QKLVNLKCLNLEYMNNLNQFP 604
I+ P+EL KL L L+L N L + P
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLS-SNKLKKLP 179
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 72/188 (38%), Gaps = 47/188 (25%)
Query: 457 VIRDMVLWIACKIEKEKENF--------------LVHAGLGLTEAPEIQNWRNVRRMSLM 502
+ D L A KI K N L G G+T +Q N+ + L
Sbjct: 12 IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71
Query: 503 KNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGIST 562
N+I +L+ + L LS N LK N+ S I+
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLK----------------NV----------SAIAG 105
Query: 563 LVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDC 622
L S++ LDL+ST IT + L L NL+ L L+ LNQ IS + L L+
Sbjct: 106 LQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLD----LNQITN--ISPLAGLTNLQYLSI 158
Query: 623 GGSKIERL 630
G +++ L
Sbjct: 159 GNAQVSDL 166
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 489 EIQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFN 546
E+ N++++ + L N+I LS LL+L LS N L+ F + SLR+ +
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 547 MSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576
+ N + + L +L HL + + +
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 521 LFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGI-STLVSLEHLDLSSTAITHL 579
L+L DN + F S+ +L+ + +N L LP G+ +L L LDL + +T L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 580 PIEL-QKLVNLKCLNLEYMNNLNQFPR 605
P + +LV+LK L + N L + PR
Sbjct: 104 PSAVFDRLVHLKELFM-CCNKLTELPR 129
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 511 ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570
E + P+L L L N + S D + L + ++S+N L ++P +S L L +D
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 571 LSSTAIT 577
LS+ ++
Sbjct: 708 LSNNNLS 714
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 511 ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570
E + P+L L L N + S D + L + ++S+N L ++P +S L L +D
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 571 LSSTAIT 577
LS+ ++
Sbjct: 711 LSNNNLS 717
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 307 DIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLR 350
D+P A S+ +EC G PL + IG + + P W Y ++ L+
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 307 DIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLR 350
D+P A S+ +EC G PL + IG + + P W Y ++ L+
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQ 353
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 520 SLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHL 579
SL LS+N + ++ Q +L+ +++N + S+L SLEHLDLS +++L
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 580 PIE-LQKLVNLKCLNLEYMNNLNQFPRL----VISAFSKLQVLRMFDCGG-SKIERLKIN 633
+ L +L LNL N + L + S +KLQ+LR+ + +KI+R
Sbjct: 90 SSSWFKPLSSLTFLNLLG----NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-- 143
Query: 634 VLFGGHQFLVE 644
F G FL E
Sbjct: 144 --FAGLTFLEE 152
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 48/170 (28%)
Query: 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMSTDDFFQSMP 540
GLTEA V+ + L N+I +S + C +L +L L+ N + +D F
Sbjct: 49 GLTEA--------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF---- 96
Query: 541 SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNN 599
S+L SLEHLDLS +++L + L +L LNL
Sbjct: 97 --------------------SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG--- 133
Query: 600 LNQFPRL----VISAFSKLQVLRMFDCGG-SKIERLKINVLFGGHQFLVE 644
N + L + S +KLQ+LR+ + +KI+R F G FL E
Sbjct: 134 -NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----FAGLTFLEE 178
>pdb|4H0W|A Chain A, Bismuth Bound Human Serum Transferrin
Length = 679
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 365 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 419
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++AI V+++SAS+
Sbjct: 420 DTPEAGYFAIAVVKKSASDL 439
>pdb|3SKP|A Chain A, The Structure Of Apo-Human Transferrin C-Lobe With Bound
Sulfate Ions
Length = 342
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 28 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 82
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++A+ V+++SAS+
Sbjct: 83 DTPEAGYFAVAVVKKSASDL 102
>pdb|3V89|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 343
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 29 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 83
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++A+ V+++SAS+
Sbjct: 84 DTPEAGYFAVAVVKKSASDL 103
>pdb|3V83|A Chain A, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|B Chain B, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|C Chain C, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|D Chain D, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|E Chain E, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V83|F Chain F, The 2.1 Angstrom Crystal Structure Of Diferric Human
Transferrin
pdb|3V8X|B Chain B, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 698
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 384 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 438
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++A+ V+++SAS+
Sbjct: 439 DTPEAGYFAVAVVKKSASDL 458
>pdb|2HAV|A Chain A, Apo-Human Serum Transferrin (Glycosylated)
pdb|2HAV|B Chain B, Apo-Human Serum Transferrin (Glycosylated)
Length = 676
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 362 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 416
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++A+ V+++SAS+
Sbjct: 417 DTPEAGYFAVAVVKKSASDL 436
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 44/188 (23%)
Query: 484 LTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLR 543
LT+ PE+ +++ + + +N LSE P P+L L S N ++ D PSL
Sbjct: 269 LTDLPELP--QSLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRSLCD----LPPSLE 320
Query: 544 VFNMSNNHL--LWKLPSGISTLV-SLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNL 600
N+SNN L L LP + L+ S HL + LP NLK L++EY N L
Sbjct: 321 ELNVSNNKLIELPALPPRLERLIASFNHL----AEVPELP------QNLKQLHVEY-NPL 369
Query: 601 NQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEEL-MGMKHLMVLTITL 659
+FP + S +E L++N H V EL +K L V T L
Sbjct: 370 REFPDIPES-----------------VEDLRMN----SHLAEVPELPQNLKQLHVETNPL 408
Query: 660 KSWQALKE 667
+ + + E
Sbjct: 409 REFPDIPE 416
>pdb|3QYT|A Chain A, Diferric Bound Human Serum Transferrin
Length = 679
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 365 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCE 419
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++A+ V+++SAS+
Sbjct: 420 DTPEAGYFAVAVVKKSASDL 439
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 13/99 (13%)
Query: 501 LMKNKIENLS--ETPT-CPHLLSLFLSDNSLKMSTD-----DFFQSMPSLRVFNMSNNHL 552
L +N+ + S +TP+ P L LFL +N L+++ + D F+ + L+V +++N+L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492
Query: 553 LWKLPSGISTLVSLEHLDLSS---TAITH--LPIELQKL 586
P S L +L L L+S T ++H LP L+ L
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL 531
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLDLSST 574
P L +L L DN L F+ + LR + NN + +PS + + SL LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGEL 141
Query: 575 AITHLPIE--LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKI 632
E + LVNL+ LNL M NL P L +A +L+ L + G++++ ++
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLG-MCNLKDIPNL--TALVRLEELEL---SGNRLDLIRP 195
Query: 633 NVLFGGHQFLVE-ELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLF 682
G Q L + + H V TI ++ LK L +EL S +L
Sbjct: 196 ----GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL---EELNLSHNNLM 239
>pdb|3VE1|B Chain B, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
pdb|3VE1|D Chain D, The 2.9 Angstrom Crystal Structure Of Transferrin Binding
Protein B (Tbpb) From Serogroup B M982 Neisseria
Meningitidis In Complex With Human Transferrin
Length = 679
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 365 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYDKSDNCE 419
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ ++A+ V+++SAS+
Sbjct: 420 DTPEAGYFAVAVVKKSASDL 439
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 539 MPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+ +L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 539 MPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+ +L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPS-GISTLVSLEHLDLSST 574
P L +L L DN L F+ + LR + NN + +PS + + SL LDL
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGEL 141
Query: 575 AITHLPIE--LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKI 632
E + LVNL+ LNL M NL P L +A +L+ L + G++++ ++
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLG-MCNLKDIPNL--TALVRLEELEL---SGNRLDLIRP 195
Query: 633 NVLFGGHQFLVE-ELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLF 682
G Q L + + H V TI ++ LK L +EL S +L
Sbjct: 196 ----GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSL---EELNLSHNNLM 239
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 539 MPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+ +L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2HAU|A Chain A, Apo-Human Serum Transferrin (Non-Glycosylated)
pdb|2HAU|B Chain B, Apo-Human Serum Transferrin (Non-Glycosylated)
Length = 676
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 315 VAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRRSASEF 356
+A +C +P+ ++ C+ TP+ ++A+ V+++SAS+
Sbjct: 395 IAGKCGLVPVLAENYDKSDNCEDTPEAGYFAVAVVKKSASDL 436
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 570 DLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIER 629
D S +TH+P +L N+ LNL + NQ RL + F++ L + D G + I +
Sbjct: 10 DCSHLKLTHIPDDLPS--NITVLNLTH----NQLRRLPPTNFTRYSQLAILDAGFNSISK 63
Query: 630 LK 631
L+
Sbjct: 64 LE 65
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 541 SLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 541 SLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 541 SLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 541 SLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 541 SLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAI 576
+L+ N+++N + +KLP S L +LEHLDLSS I
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 515 CPHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHL 552
P LLSL LS+N L D Q P+L++ N+S N L
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 516 PHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHL 552
P LLSL LS+N L D Q P+L++ N+S N L
Sbjct: 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 514 TCPHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHL 552
P LLSL LS+N L D Q P+L++ N+S N L
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208
>pdb|3HTK|C Chain C, Crystal Structure Of Mms21 And Smc5 Complex
Length = 267
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 17/65 (26%)
Query: 413 YDRSGAYN--EGYYIIGILLHACLLXXXXXXXXXXXXXXHVVKMHDVIRDMVLWIACKIE 470
+DR G N +GY AC VV M D +RD ++ + CKI
Sbjct: 204 FDRDGIQNYLQGYTTRDCPQAAC---------------SQVVSMRDFVRDPIMELRCKIA 248
Query: 471 KEKEN 475
K KE+
Sbjct: 249 KMKES 253
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 516 PHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHL 552
P LLSL LS+N L D Q P+L++ N+S N L
Sbjct: 164 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 202
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 516 PHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHL 552
P LLSL LS+N L D Q P+L++ N+S N L
Sbjct: 164 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 202
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 490 IQNWRNVRRMSLMKNKIENLSETP--TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNM 547
++ ++ +++L +N+I + + HLL L LS N L F+++ L V ++
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 548 SNNHLLWKLPSGISTLVSLEHLDLSSTAITHLP 580
S NH+ L +L+ L L + + +P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
>pdb|3S9L|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|C Chain C, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|D Chain D, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 693
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS---VAQECAGLPLALITIGRAMACK 336
K+EC+ E E+ +++ D L +A +C +P+ ++ C+
Sbjct: 379 KIECVSAETT-----EDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYDKSDNCE 433
Query: 337 KTPQEWHYAIQVLRRSASEF 356
TP+ +A+ V+++SAS+
Sbjct: 434 DTPEAGFFAVAVVKKSASDL 453
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 533 DDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLP-IELQKLVNLKC 591
+D FQS L ++ N L++ + ++ L+HL L+ T I++L I + L NL+
Sbjct: 73 EDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLES 132
Query: 592 LNL--EYMNNLN---QFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL---------FG 637
L+L +++++N FP L+VL + I R N L F
Sbjct: 133 LHLGSNHISSINLPENFPT------QNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFN 186
Query: 638 GHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRST-QSLFLRCFNDS 689
G+ ++ + + + +LK +L +I + LQ ST QSL+L F D+
Sbjct: 187 GND--IKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDT 237
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 496 VRRMSLMKNKIENLSETPT----CPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNH 551
++R+ L + ++N+ +P+ +L L LS+N++ DD + + L + ++ +N+
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515
Query: 552 L--LWKL--PSG-ISTLVSLEH---LDLSSTAITHLPIELQK-LVNLKCLNLEYMNNLNQ 602
L LWK P G I L L H L+L S +P+E+ K L LK ++L +NNLN
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNT 574
Query: 603 FPRLVISAFSKLQVLRM 619
P V + L+ L +
Sbjct: 575 LPASVFNNQVSLKSLNL 591
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 496 VRRMSLMKNKIENLSETPT----CPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNH 551
++R+ L + ++N+ +P+ +L L LS+N++ DD + + L + ++ +N+
Sbjct: 466 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 525
Query: 552 L--LWKL--PSG-ISTLVSLEH---LDLSSTAITHLPIELQK-LVNLKCLNLEYMNNLNQ 602
L LWK P G I L L H L+L S +P+E+ K L LK ++L +NNLN
Sbjct: 526 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNT 584
Query: 603 FPRLVISAFSKLQVLRM 619
P V + L+ L +
Sbjct: 585 LPASVFNNQVSLKSLNL 601
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 518 LLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAIT 577
L L L N ++M + +P+LR ++ NN L ++P+G+ L L+ + L + IT
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 14/137 (10%)
Query: 496 VRRMSLMKNKIENLSETPT----CPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNH 551
++R+ L + ++N+ +P+ +L L LS+N++ DD + + L + ++ +N+
Sbjct: 461 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 520
Query: 552 L--LWKL--PSG-ISTLVSLEH---LDLSSTAITHLPIELQK-LVNLKCLNLEYMNNLNQ 602
L LWK P G I L L H L+L S +P+E+ K L LK ++L +NNLN
Sbjct: 521 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNT 579
Query: 603 FPRLVISAFSKLQVLRM 619
P V + L+ L +
Sbjct: 580 LPASVFNNQVSLKSLNL 596
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,562,965
Number of Sequences: 62578
Number of extensions: 747024
Number of successful extensions: 1797
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 218
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)