Query 038398
Match_columns 720
No_of_seqs 485 out of 3860
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-91 4.2E-96 790.7 49.5 684 10-715 24-731 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-58 8.1E-63 549.4 46.4 543 126-717 184-841 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6E-46 1.3E-50 382.1 18.0 281 131-413 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.6 2.1E-15 4.5E-20 181.7 13.1 221 492-716 116-347 (968)
5 KOG0472 Leucine-rich repeat pr 99.6 3.9E-16 8.5E-21 153.9 2.5 223 486-713 198-540 (565)
6 PLN00113 leucine-rich repeat r 99.6 8.2E-15 1.8E-19 176.5 13.7 220 491-714 137-369 (968)
7 KOG4194 Membrane glycoprotein 99.6 8.8E-16 1.9E-20 158.1 4.2 221 488-713 167-428 (873)
8 KOG0444 Cytoskeletal regulator 99.6 3.3E-16 7.2E-21 162.1 -0.3 218 474-712 34-256 (1255)
9 KOG0444 Cytoskeletal regulator 99.5 1.1E-15 2.3E-20 158.4 1.3 217 492-718 148-379 (1255)
10 KOG4194 Membrane glycoprotein 99.5 1.2E-15 2.6E-20 157.1 1.4 101 496-596 127-230 (873)
11 PLN03210 Resistant to P. syrin 99.5 8E-14 1.7E-18 168.3 14.6 125 477-604 594-721 (1153)
12 KOG0617 Ras suppressor protein 99.5 6E-16 1.3E-20 135.1 -3.3 163 509-693 26-189 (264)
13 PRK04841 transcriptional regul 99.5 5.7E-12 1.2E-16 151.1 24.7 298 121-466 9-332 (903)
14 KOG0617 Ras suppressor protein 99.4 4.2E-15 9.2E-20 129.9 -4.5 163 484-665 23-188 (264)
15 PRK00411 cdc6 cell division co 99.4 4.4E-11 9.6E-16 128.7 25.4 294 126-438 30-358 (394)
16 PRK15387 E3 ubiquitin-protein 99.4 2.5E-12 5.4E-17 144.3 12.7 55 651-713 403-457 (788)
17 TIGR02928 orc1/cdc6 family rep 99.3 5.5E-10 1.2E-14 119.0 26.3 296 126-439 15-351 (365)
18 KOG0472 Leucine-rich repeat pr 99.3 3.4E-14 7.4E-19 140.4 -5.5 213 487-712 84-308 (565)
19 PF01637 Arch_ATPase: Archaeal 99.3 1.1E-11 2.4E-16 123.2 10.8 196 128-328 1-233 (234)
20 PRK15370 E3 ubiquitin-protein 99.3 1.7E-11 3.7E-16 138.6 13.3 137 477-630 183-319 (754)
21 TIGR03015 pepcterm_ATPase puta 99.3 7.6E-10 1.7E-14 112.5 23.6 181 145-333 41-242 (269)
22 KOG0618 Serine/threonine phosp 99.2 4.3E-12 9.4E-17 138.3 1.5 43 492-534 239-282 (1081)
23 PRK00080 ruvB Holliday junctio 99.2 3.5E-10 7.6E-15 117.9 14.7 274 126-439 25-311 (328)
24 COG2909 MalT ATP-dependent tra 99.2 1.7E-09 3.6E-14 118.2 19.8 306 116-467 9-339 (894)
25 KOG0618 Serine/threonine phosp 99.1 4.5E-12 9.7E-17 138.2 -1.3 198 492-711 285-510 (1081)
26 TIGR00635 ruvB Holliday juncti 99.1 3.2E-09 7E-14 109.9 19.3 266 126-439 4-290 (305)
27 KOG4237 Extracellular matrix p 99.1 1.4E-11 3.1E-16 122.0 1.4 233 475-712 49-333 (498)
28 PRK15370 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 131.3 9.5 212 477-713 204-427 (754)
29 COG3899 Predicted ATPase [Gene 99.1 1.4E-09 3E-14 125.6 17.1 316 127-466 1-386 (849)
30 cd00116 LRR_RI Leucine-rich re 99.1 2.9E-10 6.2E-15 118.9 8.1 57 540-596 137-202 (319)
31 PF05729 NACHT: NACHT domain 99.1 1.1E-09 2.4E-14 102.4 11.0 142 148-298 1-164 (166)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.9E-15 105.0 4.9 133 487-623 12-151 (175)
33 KOG4658 Apoptotic ATPase [Sign 99.0 5.5E-10 1.2E-14 128.5 8.4 235 477-717 528-786 (889)
34 COG2256 MGS1 ATPase related to 99.0 2E-08 4.4E-13 101.0 17.1 175 125-329 23-213 (436)
35 PRK15387 E3 ubiquitin-protein 99.0 2.1E-09 4.6E-14 121.0 11.1 132 459-605 188-319 (788)
36 KOG4237 Extracellular matrix p 99.0 5.5E-11 1.2E-15 117.9 -1.6 208 488-712 85-357 (498)
37 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-09 2.6E-14 100.7 6.9 120 477-596 24-149 (175)
38 PRK06893 DNA replication initi 98.9 9.9E-09 2.2E-13 100.8 13.2 170 125-327 15-201 (229)
39 KOG0532 Leucine-rich repeat (L 98.9 5.3E-11 1.1E-15 123.3 -3.6 193 494-711 75-270 (722)
40 cd00116 LRR_RI Leucine-rich re 98.9 7.1E-10 1.5E-14 116.0 4.1 211 490-713 47-290 (319)
41 PRK13342 recombination factor 98.9 2.5E-08 5.5E-13 107.1 15.1 177 124-330 10-197 (413)
42 PTZ00112 origin recognition co 98.9 2.7E-07 5.8E-12 102.1 22.1 207 126-334 755-987 (1164)
43 PRK04195 replication factor C 98.8 1.7E-07 3.7E-12 102.8 19.0 245 126-413 14-272 (482)
44 TIGR03420 DnaA_homol_Hda DnaA 98.8 6.2E-08 1.3E-12 95.7 13.3 173 126-331 15-203 (226)
45 KOG2028 ATPase related to the 98.8 8.1E-08 1.7E-12 94.7 12.3 173 126-323 138-330 (554)
46 PRK07003 DNA polymerase III su 98.7 2.7E-07 5.8E-12 101.6 17.1 197 126-333 16-225 (830)
47 PRK12323 DNA polymerase III su 98.7 1.1E-06 2.3E-11 95.8 19.5 201 126-333 16-230 (700)
48 PRK14960 DNA polymerase III su 98.7 8.3E-07 1.8E-11 96.9 17.5 196 126-333 15-224 (702)
49 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.4E-13 108.2 5.1 87 516-605 116-203 (394)
50 KOG3207 Beta-tubulin folding c 98.7 4E-09 8.6E-14 106.4 -0.4 57 494-550 121-182 (505)
51 PRK12402 replication factor C 98.7 3.9E-07 8.4E-12 96.0 14.7 194 126-326 15-223 (337)
52 KOG1259 Nischarin, modulator o 98.6 4.7E-09 1E-13 100.5 -0.1 134 489-630 279-414 (490)
53 PF05496 RuvB_N: Holliday junc 98.6 3.5E-07 7.7E-12 86.2 12.2 178 122-333 20-225 (233)
54 PRK14949 DNA polymerase III su 98.6 4.8E-07 1E-11 101.7 15.4 181 125-329 15-221 (944)
55 COG1474 CDC6 Cdc6-related prot 98.6 2E-06 4.3E-11 89.7 18.8 202 126-330 17-239 (366)
56 KOG0532 Leucine-rich repeat (L 98.6 2.6E-09 5.6E-14 111.0 -2.6 176 490-686 94-270 (722)
57 cd00009 AAA The AAA+ (ATPases 98.6 2.5E-07 5.4E-12 84.4 10.7 123 129-268 1-131 (151)
58 PLN03025 replication factor C 98.6 3.8E-07 8.3E-12 94.7 13.0 183 126-329 13-201 (319)
59 PRK00440 rfc replication facto 98.6 1.1E-06 2.3E-11 91.9 16.4 183 125-329 16-204 (319)
60 PF13173 AAA_14: AAA domain 98.6 8.4E-08 1.8E-12 85.0 6.7 120 147-289 2-127 (128)
61 PF13855 LRR_8: Leucine rich r 98.6 3.3E-08 7.2E-13 74.7 3.5 60 516-575 1-60 (61)
62 PRK05564 DNA polymerase III su 98.6 1.1E-06 2.5E-11 90.9 16.1 177 126-328 4-189 (313)
63 PRK14962 DNA polymerase III su 98.6 1.1E-06 2.3E-11 95.0 16.3 187 125-333 13-223 (472)
64 KOG1259 Nischarin, modulator o 98.6 2.2E-08 4.8E-13 96.0 2.5 36 491-526 211-247 (490)
65 TIGR02903 spore_lon_C ATP-depe 98.6 6.7E-06 1.4E-10 92.3 22.5 203 125-332 153-398 (615)
66 PRK14961 DNA polymerase III su 98.6 2.2E-06 4.7E-11 90.5 17.6 193 125-329 15-221 (363)
67 PRK08727 hypothetical protein; 98.6 1.4E-06 3E-11 85.8 15.0 167 125-324 18-199 (233)
68 PRK14963 DNA polymerase III su 98.6 1.3E-06 2.9E-11 95.1 15.9 199 126-334 14-223 (504)
69 PRK14957 DNA polymerase III su 98.5 2E-06 4.4E-11 93.8 16.1 185 126-333 16-225 (546)
70 PRK14956 DNA polymerase III su 98.5 7.7E-07 1.7E-11 94.4 12.3 195 125-331 17-225 (484)
71 PF13401 AAA_22: AAA domain; P 98.5 2.3E-07 4.9E-12 82.9 7.3 116 147-266 4-125 (131)
72 PRK08084 DNA replication initi 98.5 2.1E-06 4.6E-11 84.7 14.2 168 126-326 22-206 (235)
73 PRK14958 DNA polymerase III su 98.5 4.5E-06 9.8E-11 91.2 17.7 187 125-333 15-225 (509)
74 cd01128 rho_factor Transcripti 98.5 2E-07 4.4E-12 91.7 6.5 91 146-240 15-114 (249)
75 PF13191 AAA_16: AAA ATPase do 98.5 3.8E-07 8.1E-12 86.9 8.2 45 127-171 1-48 (185)
76 PRK06645 DNA polymerase III su 98.5 4.4E-06 9.6E-11 90.6 17.2 199 125-331 20-232 (507)
77 PLN03150 hypothetical protein; 98.5 4.2E-07 9.1E-12 102.8 9.7 103 517-620 419-523 (623)
78 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.7E-12 102.1 5.1 176 487-685 109-286 (394)
79 PRK13341 recombination factor 98.5 1.4E-06 3E-11 98.6 13.4 177 125-331 27-220 (725)
80 PRK07471 DNA polymerase III su 98.4 6.3E-06 1.4E-10 86.2 16.7 199 124-330 17-239 (365)
81 PRK14964 DNA polymerase III su 98.4 5.7E-06 1.2E-10 89.0 16.5 183 125-329 12-218 (491)
82 TIGR02397 dnaX_nterm DNA polym 98.4 8.9E-06 1.9E-10 86.3 17.9 182 125-329 13-218 (355)
83 PTZ00202 tuzin; Provisional 98.4 3.6E-06 7.7E-11 86.7 13.9 162 122-297 258-434 (550)
84 PLN03150 hypothetical protein; 98.4 7.2E-07 1.6E-11 100.9 9.7 110 495-604 419-532 (623)
85 PRK09087 hypothetical protein; 98.4 4.1E-06 8.9E-11 81.7 13.3 141 146-328 43-194 (226)
86 PRK14959 DNA polymerase III su 98.4 1.1E-05 2.4E-10 88.7 17.7 197 126-334 16-226 (624)
87 PRK07994 DNA polymerase III su 98.4 3.9E-06 8.5E-11 93.0 14.3 193 125-329 15-221 (647)
88 PRK08903 DnaA regulatory inact 98.4 4E-06 8.7E-11 82.7 13.1 171 126-333 18-203 (227)
89 PRK08691 DNA polymerase III su 98.4 3.6E-06 7.8E-11 92.9 13.7 197 126-333 16-225 (709)
90 PRK05896 DNA polymerase III su 98.4 6.4E-06 1.4E-10 90.0 15.4 196 125-332 15-224 (605)
91 PRK09112 DNA polymerase III su 98.4 4.9E-06 1.1E-10 86.5 13.9 200 122-330 19-241 (351)
92 COG2255 RuvB Holliday junction 98.4 2.2E-05 4.8E-10 75.7 16.9 174 124-331 24-225 (332)
93 PRK14951 DNA polymerase III su 98.4 7.2E-06 1.6E-10 90.8 15.8 197 125-329 15-226 (618)
94 PRK14955 DNA polymerase III su 98.4 5.6E-06 1.2E-10 88.5 14.4 202 125-331 15-231 (397)
95 TIGR01242 26Sp45 26S proteasom 98.4 2.2E-06 4.7E-11 90.8 11.0 170 126-323 122-328 (364)
96 KOG1859 Leucine-rich repeat pr 98.4 3E-08 6.4E-13 105.9 -3.1 186 480-687 95-290 (1096)
97 PRK07940 DNA polymerase III su 98.3 1.4E-05 3.1E-10 84.3 16.5 186 126-329 5-213 (394)
98 PF13855 LRR_8: Leucine rich r 98.3 4.7E-07 1E-11 68.4 3.9 58 540-597 1-59 (61)
99 PRK09376 rho transcription ter 98.3 1.5E-06 3.3E-11 89.0 8.5 100 137-240 158-267 (416)
100 PRK14970 DNA polymerase III su 98.3 1.5E-05 3.3E-10 84.7 16.5 185 126-332 17-213 (367)
101 PRK05642 DNA replication initi 98.3 1.2E-05 2.5E-10 79.3 13.8 147 148-327 46-206 (234)
102 TIGR00678 holB DNA polymerase 98.3 2.3E-05 5.1E-10 74.7 15.5 159 137-324 3-186 (188)
103 PRK14952 DNA polymerase III su 98.3 2.5E-05 5.4E-10 86.2 17.3 198 125-334 12-225 (584)
104 PRK14969 DNA polymerase III su 98.3 1.6E-05 3.4E-10 87.7 15.5 186 126-333 16-225 (527)
105 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-07 2.8E-12 91.0 -1.0 80 495-574 186-270 (419)
106 PRK09111 DNA polymerase III su 98.2 2E-05 4.4E-10 87.4 15.7 194 126-328 24-232 (598)
107 PRK07764 DNA polymerase III su 98.2 2E-05 4.4E-10 90.5 16.0 196 126-333 15-226 (824)
108 PRK14954 DNA polymerase III su 98.2 3.4E-05 7.4E-10 85.8 16.5 201 126-331 16-231 (620)
109 KOG0989 Replication factor C, 98.2 1.2E-05 2.6E-10 78.4 11.2 191 126-333 36-235 (346)
110 KOG3207 Beta-tubulin folding c 98.2 2.1E-07 4.5E-12 94.3 -0.8 185 490-684 142-334 (505)
111 KOG0531 Protein phosphatase 1, 98.2 2.5E-07 5.5E-12 99.9 -0.2 104 490-597 91-196 (414)
112 TIGR03345 VI_ClpV1 type VI sec 98.2 2.4E-05 5.3E-10 91.0 15.3 181 125-323 186-390 (852)
113 PHA02544 44 clamp loader, smal 98.2 3.9E-05 8.6E-10 79.9 15.3 145 126-295 21-171 (316)
114 TIGR02881 spore_V_K stage V sp 98.2 1.5E-05 3.3E-10 80.2 11.6 155 126-299 6-193 (261)
115 PRK14971 DNA polymerase III su 98.2 5E-05 1.1E-09 85.0 16.5 183 126-331 17-225 (614)
116 PRK08451 DNA polymerase III su 98.2 6.9E-05 1.5E-09 81.6 17.0 180 126-327 14-216 (535)
117 TIGR00767 rho transcription te 98.1 8.2E-06 1.8E-10 84.2 9.2 93 146-240 167-266 (415)
118 TIGR02880 cbbX_cfxQ probable R 98.1 3.8E-05 8.1E-10 78.0 14.0 154 127-299 23-210 (284)
119 PRK06305 DNA polymerase III su 98.1 7.9E-05 1.7E-09 80.6 17.2 184 125-331 16-225 (451)
120 PRK14950 DNA polymerase III su 98.1 6.2E-05 1.3E-09 84.5 16.7 191 126-327 16-219 (585)
121 PF05621 TniB: Bacterial TniB 98.1 0.00011 2.3E-09 73.1 16.2 193 135-329 46-261 (302)
122 PF00308 Bac_DnaA: Bacterial d 98.1 2.3E-05 4.9E-10 76.3 11.4 158 147-326 34-205 (219)
123 PRK11331 5-methylcytosine-spec 98.1 2.5E-05 5.4E-10 82.1 12.2 107 126-240 175-283 (459)
124 COG3903 Predicted ATPase [Gene 98.1 2.9E-06 6.4E-11 86.4 5.0 295 146-468 13-316 (414)
125 PRK07133 DNA polymerase III su 98.1 8.3E-05 1.8E-09 83.2 16.6 189 126-331 18-222 (725)
126 PRK03992 proteasome-activating 98.1 3.1E-05 6.6E-10 82.5 12.6 169 126-322 131-336 (389)
127 CHL00181 cbbX CbbX; Provisiona 98.1 5.6E-05 1.2E-09 76.6 13.8 155 127-300 24-212 (287)
128 PRK14953 DNA polymerase III su 98.1 0.00013 2.8E-09 79.5 17.5 174 126-326 16-217 (486)
129 KOG2227 Pre-initiation complex 98.1 0.00016 3.4E-09 74.8 16.8 206 124-332 148-375 (529)
130 PF14516 AAA_35: AAA-like doma 98.1 0.00027 5.8E-09 73.5 19.1 200 126-336 11-246 (331)
131 PRK06647 DNA polymerase III su 98.1 0.00011 2.3E-09 81.5 16.7 194 125-330 15-222 (563)
132 KOG0531 Protein phosphatase 1, 98.0 5.9E-07 1.3E-11 97.1 -1.4 124 493-621 71-195 (414)
133 KOG2543 Origin recognition com 98.0 6E-05 1.3E-09 75.7 12.6 164 126-296 6-192 (438)
134 PRK14087 dnaA chromosomal repl 98.0 4.2E-05 9E-10 82.7 12.6 165 148-330 142-320 (450)
135 PRK14965 DNA polymerase III su 98.0 8.3E-05 1.8E-09 83.1 15.2 197 125-333 15-225 (576)
136 TIGR02639 ClpA ATP-dependent C 98.0 3.6E-05 7.8E-10 89.0 12.7 156 125-298 181-359 (731)
137 PRK14948 DNA polymerase III su 98.0 0.00019 4E-09 80.5 17.5 193 125-327 15-220 (620)
138 COG1222 RPT1 ATP-dependent 26S 98.0 0.00019 4.1E-09 71.8 15.0 177 129-333 154-371 (406)
139 PTZ00361 26 proteosome regulat 98.0 4.7E-05 1E-09 81.1 11.6 169 127-323 184-389 (438)
140 PRK05563 DNA polymerase III su 98.0 0.00022 4.8E-09 79.3 17.2 195 125-331 15-223 (559)
141 PTZ00454 26S protease regulato 98.0 7.3E-05 1.6E-09 79.2 12.8 170 126-323 145-351 (398)
142 KOG4579 Leucine-rich repeat (L 98.0 9.1E-07 2E-11 75.4 -1.4 108 496-605 29-140 (177)
143 PRK06620 hypothetical protein; 97.9 4.8E-05 1.1E-09 73.6 9.9 130 148-323 45-183 (214)
144 TIGR03689 pup_AAA proteasome A 97.9 5.5E-05 1.2E-09 81.8 11.1 157 126-299 182-380 (512)
145 TIGR03346 chaperone_ClpB ATP-d 97.9 8.7E-05 1.9E-09 87.1 13.6 155 125-297 172-349 (852)
146 KOG2982 Uncharacterized conser 97.9 6.1E-06 1.3E-10 79.6 3.2 99 496-597 47-156 (418)
147 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 55.1 4.1 39 565-604 2-40 (44)
148 PRK15386 type III secretion pr 97.9 2.6E-05 5.6E-10 81.1 7.5 82 490-582 48-133 (426)
149 KOG2120 SCF ubiquitin ligase, 97.9 1E-06 2.2E-11 84.9 -2.6 185 516-712 185-374 (419)
150 PRK10865 protein disaggregatio 97.9 9.1E-05 2E-09 86.6 12.4 156 125-297 177-354 (857)
151 KOG1909 Ran GTPase-activating 97.9 1.7E-05 3.7E-10 78.6 5.1 189 491-687 27-252 (382)
152 TIGR00362 DnaA chromosomal rep 97.9 0.00016 3.4E-09 78.0 13.1 156 148-325 137-306 (405)
153 CHL00095 clpC Clp protease ATP 97.8 9.1E-05 2E-09 86.7 11.9 180 126-321 179-379 (821)
154 PRK14088 dnaA chromosomal repl 97.8 0.00016 3.4E-09 78.2 12.8 156 147-324 130-300 (440)
155 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 54.8 3.4 40 540-580 1-40 (44)
156 PRK15386 type III secretion pr 97.8 2.9E-05 6.3E-10 80.7 6.7 160 513-714 49-213 (426)
157 PRK00149 dnaA chromosomal repl 97.8 0.00017 3.8E-09 78.6 12.8 157 147-325 148-318 (450)
158 COG3267 ExeA Type II secretory 97.8 0.00077 1.7E-08 64.6 15.2 183 145-332 49-248 (269)
159 COG0466 Lon ATP-dependent Lon 97.8 0.0017 3.8E-08 70.9 19.6 157 127-298 324-509 (782)
160 KOG1859 Leucine-rich repeat pr 97.8 7.6E-07 1.7E-11 95.5 -5.9 125 491-620 161-287 (1096)
161 PRK07399 DNA polymerase III su 97.8 0.00093 2E-08 68.6 16.3 196 126-328 4-220 (314)
162 PF05673 DUF815: Protein of un 97.8 0.0007 1.5E-08 65.2 14.0 50 122-171 23-76 (249)
163 TIGR01241 FtsH_fam ATP-depende 97.8 0.00042 9.1E-09 76.6 14.5 177 126-329 55-267 (495)
164 COG1373 Predicted ATPase (AAA+ 97.7 0.00033 7.2E-09 74.5 13.1 165 130-328 21-191 (398)
165 PRK12422 chromosomal replicati 97.7 0.00041 8.9E-09 74.8 13.8 158 148-329 142-314 (445)
166 KOG1909 Ran GTPase-activating 97.7 2.6E-05 5.6E-10 77.3 3.7 191 512-712 26-252 (382)
167 smart00382 AAA ATPases associa 97.7 0.00011 2.4E-09 66.1 7.7 88 148-242 3-91 (148)
168 PRK05707 DNA polymerase III su 97.7 0.0008 1.7E-08 69.5 14.7 94 229-329 106-203 (328)
169 TIGR00602 rad24 checkpoint pro 97.7 0.00016 3.5E-09 80.4 10.0 199 125-330 83-325 (637)
170 PRK14086 dnaA chromosomal repl 97.7 0.00052 1.1E-08 75.4 13.4 154 148-323 315-482 (617)
171 PRK11034 clpA ATP-dependent Cl 97.7 0.0002 4.3E-09 81.9 10.6 156 126-297 186-362 (758)
172 CHL00176 ftsH cell division pr 97.7 0.00061 1.3E-08 76.5 14.1 170 126-322 183-387 (638)
173 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00044 9.5E-09 73.6 11.9 170 126-322 190-395 (802)
174 KOG1644 U2-associated snRNP A' 97.6 7.3E-05 1.6E-09 68.5 5.2 101 495-596 43-149 (233)
175 TIGR00763 lon ATP-dependent pr 97.6 0.0044 9.6E-08 72.3 21.3 45 127-171 321-371 (775)
176 KOG4579 Leucine-rich repeat (L 97.6 1.5E-05 3.2E-10 68.2 -0.1 112 516-633 27-141 (177)
177 KOG4341 F-box protein containi 97.6 8.1E-06 1.8E-10 82.6 -2.2 202 513-715 213-440 (483)
178 PRK08118 topology modulation p 97.6 4.8E-05 1E-09 70.6 3.0 36 148-183 2-37 (167)
179 PRK08116 hypothetical protein; 97.5 0.00017 3.6E-09 72.5 6.9 101 148-266 115-220 (268)
180 PRK10536 hypothetical protein; 97.5 0.00058 1.3E-08 66.6 10.3 55 126-183 55-109 (262)
181 PRK08058 DNA polymerase III su 97.5 0.0018 3.8E-08 67.4 14.4 160 127-295 6-180 (329)
182 KOG0730 AAA+-type ATPase [Post 97.5 0.0036 7.9E-08 67.8 16.2 162 127-312 435-630 (693)
183 COG1223 Predicted ATPase (AAA+ 97.5 0.00088 1.9E-08 63.9 10.3 170 126-323 121-319 (368)
184 PF00004 AAA: ATPase family as 97.5 0.00023 4.9E-09 63.3 6.0 22 150-171 1-22 (132)
185 PF04665 Pox_A32: Poxvirus A32 97.4 0.00029 6.4E-09 68.3 6.7 36 148-186 14-49 (241)
186 PF10443 RNA12: RNA12 protein; 97.4 0.0088 1.9E-07 62.4 17.5 203 131-341 1-290 (431)
187 KOG3665 ZYG-1-like serine/thre 97.4 6.8E-05 1.5E-09 84.8 2.4 158 516-684 122-283 (699)
188 PRK10787 DNA-binding ATP-depen 97.4 0.0034 7.5E-08 72.5 15.5 158 126-298 322-507 (784)
189 KOG3665 ZYG-1-like serine/thre 97.4 0.00017 3.7E-09 81.6 4.8 131 494-627 122-262 (699)
190 KOG2982 Uncharacterized conser 97.4 4.3E-05 9.3E-10 74.0 -0.0 201 493-708 70-286 (418)
191 COG0593 DnaA ATPase involved i 97.4 0.0029 6.4E-08 66.1 13.3 134 146-301 112-261 (408)
192 KOG0991 Replication factor C, 97.3 0.00039 8.4E-09 65.1 6.0 69 126-195 27-95 (333)
193 PF13177 DNA_pol3_delta2: DNA 97.3 0.0017 3.7E-08 59.9 10.4 137 130-285 1-162 (162)
194 PRK08769 DNA polymerase III su 97.3 0.0083 1.8E-07 61.5 16.0 173 133-330 11-209 (319)
195 PRK07261 topology modulation p 97.3 0.00079 1.7E-08 62.8 7.9 67 149-240 2-68 (171)
196 PRK12608 transcription termina 97.3 0.0016 3.4E-08 67.2 10.4 105 134-240 119-231 (380)
197 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0014 3.1E-08 71.1 10.7 172 126-323 228-429 (489)
198 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0028 6.1E-08 67.7 12.0 152 146-323 544-718 (802)
199 PRK06871 DNA polymerase III su 97.2 0.014 3E-07 60.0 16.6 177 133-326 9-200 (325)
200 KOG1644 U2-associated snRNP A' 97.2 0.00044 9.5E-09 63.6 4.8 124 497-623 22-151 (233)
201 PRK06835 DNA replication prote 97.2 0.0051 1.1E-07 63.5 13.2 36 148-186 184-219 (329)
202 COG2812 DnaX DNA polymerase II 97.2 0.0021 4.5E-08 69.3 10.5 186 125-322 15-213 (515)
203 KOG2739 Leucine-rich acidic nu 97.2 0.00021 4.5E-09 68.6 2.6 88 536-625 61-156 (260)
204 KOG2004 Mitochondrial ATP-depe 97.2 0.0026 5.6E-08 69.3 11.0 155 126-298 411-597 (906)
205 KOG0741 AAA+-type ATPase [Post 97.2 0.0064 1.4E-07 64.0 13.4 156 146-333 537-716 (744)
206 PF07693 KAP_NTPase: KAP famil 97.2 0.011 2.4E-07 61.8 15.8 40 132-171 2-44 (325)
207 PRK08181 transposase; Validate 97.2 0.00053 1.2E-08 68.4 5.5 78 140-240 101-178 (269)
208 KOG4341 F-box protein containi 97.2 4.2E-05 9.1E-10 77.6 -2.5 192 513-717 187-388 (483)
209 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0082 1.8E-07 60.3 13.8 56 132-195 8-63 (262)
210 COG0542 clpA ATP-binding subun 97.1 0.01 2.2E-07 66.9 15.6 104 126-240 491-604 (786)
211 PRK06090 DNA polymerase III su 97.1 0.018 3.9E-07 59.0 16.1 176 133-329 10-201 (319)
212 TIGR01243 CDC48 AAA family ATP 97.1 0.0072 1.6E-07 70.3 15.0 176 126-329 453-664 (733)
213 TIGR02639 ClpA ATP-dependent C 97.1 0.0028 6.1E-08 73.4 11.4 46 126-171 454-508 (731)
214 KOG1514 Origin recognition com 97.1 0.014 3E-07 63.9 15.5 198 127-331 397-623 (767)
215 KOG2228 Origin recognition com 97.1 0.0061 1.3E-07 60.7 11.7 170 126-298 24-220 (408)
216 PRK10865 protein disaggregatio 97.1 0.024 5.3E-07 66.6 18.9 46 126-171 568-622 (857)
217 PF00448 SRP54: SRP54-type pro 97.1 0.0018 3.9E-08 61.6 7.8 89 147-238 1-92 (196)
218 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00061 1.3E-08 69.9 4.8 45 127-171 52-102 (361)
219 KOG2739 Leucine-rich acidic nu 97.1 0.00031 6.6E-09 67.4 2.5 105 492-597 41-153 (260)
220 PRK06526 transposase; Provisio 97.1 0.00053 1.1E-08 68.1 4.2 26 146-171 97-122 (254)
221 PRK12377 putative replication 97.1 0.0033 7.2E-08 62.0 9.6 74 146-239 100-173 (248)
222 PF13207 AAA_17: AAA domain; P 97.1 0.00048 1E-08 60.2 3.4 23 149-171 1-23 (121)
223 TIGR01243 CDC48 AAA family ATP 97.0 0.0034 7.3E-08 73.0 11.0 172 126-324 178-382 (733)
224 KOG0734 AAA+-type ATPase conta 97.0 0.0037 8E-08 65.8 9.9 45 127-171 305-361 (752)
225 PRK09361 radB DNA repair and r 97.0 0.0027 6E-08 62.4 8.5 45 147-195 23-67 (225)
226 PRK04296 thymidine kinase; Pro 97.0 0.00073 1.6E-08 64.3 4.1 113 148-268 3-117 (190)
227 PRK06921 hypothetical protein; 97.0 0.0007 1.5E-08 67.9 4.2 39 146-186 116-154 (266)
228 PRK07993 DNA polymerase III su 97.0 0.031 6.6E-07 58.1 16.1 178 133-327 9-202 (334)
229 KOG0731 AAA+-type ATPase conta 96.9 0.0099 2.2E-07 66.5 13.1 174 126-326 311-521 (774)
230 PRK06964 DNA polymerase III su 96.9 0.042 9E-07 56.9 16.9 91 228-329 131-225 (342)
231 PRK09183 transposase/IS protei 96.9 0.0007 1.5E-08 67.7 3.6 25 147-171 102-126 (259)
232 PLN00020 ribulose bisphosphate 96.9 0.0013 2.8E-08 67.1 5.2 27 145-171 146-172 (413)
233 TIGR02237 recomb_radB DNA repa 96.9 0.0028 6.1E-08 61.5 7.5 47 147-197 12-58 (209)
234 KOG0652 26S proteasome regulat 96.9 0.035 7.6E-07 53.1 14.1 173 118-314 160-372 (424)
235 PF07728 AAA_5: AAA domain (dy 96.9 0.0011 2.3E-08 59.7 4.1 42 150-197 2-43 (139)
236 PRK12727 flagellar biosynthesi 96.9 0.03 6.4E-07 60.6 15.3 88 147-239 350-438 (559)
237 PRK04132 replication factor C 96.9 0.017 3.7E-07 66.5 14.4 156 153-330 570-733 (846)
238 COG5238 RNA1 Ran GTPase-activa 96.9 0.0017 3.8E-08 62.3 5.4 186 492-687 28-253 (388)
239 TIGR03345 VI_ClpV1 type VI sec 96.8 0.002 4.2E-08 75.4 7.0 46 126-171 566-620 (852)
240 KOG0736 Peroxisome assembly fa 96.8 0.036 7.8E-07 61.3 15.8 91 126-240 672-775 (953)
241 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0043 9.3E-08 73.1 9.7 60 126-188 565-633 (852)
242 cd01393 recA_like RecA is a b 96.8 0.011 2.3E-07 58.2 11.2 91 147-239 19-124 (226)
243 KOG0739 AAA+-type ATPase [Post 96.8 0.022 4.7E-07 55.7 12.3 170 126-323 133-335 (439)
244 PRK06696 uridine kinase; Valid 96.8 0.002 4.2E-08 63.2 5.5 42 130-171 2-46 (223)
245 PRK07952 DNA replication prote 96.8 0.0083 1.8E-07 59.0 9.7 88 134-240 84-173 (244)
246 KOG0728 26S proteasome regulat 96.7 0.017 3.7E-07 54.8 11.0 165 128-316 148-350 (404)
247 COG0542 clpA ATP-binding subun 96.7 0.012 2.7E-07 66.3 11.9 154 125-297 169-346 (786)
248 cd01131 PilT Pilus retraction 96.7 0.0019 4.2E-08 61.8 4.8 110 148-269 2-111 (198)
249 cd00983 recA RecA is a bacter 96.7 0.0039 8.4E-08 63.7 7.1 86 146-239 54-143 (325)
250 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0062 1.4E-07 60.3 8.6 49 147-196 19-71 (235)
251 TIGR02012 tigrfam_recA protein 96.7 0.0041 8.8E-08 63.5 7.2 87 146-240 54-144 (321)
252 COG0470 HolB ATPase involved i 96.7 0.0089 1.9E-07 62.5 10.2 122 127-266 2-148 (325)
253 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0048 1E-07 61.2 7.4 92 146-240 68-174 (274)
254 KOG2035 Replication factor C, 96.7 0.013 2.8E-07 56.8 9.9 210 126-352 13-261 (351)
255 COG1484 DnaC DNA replication p 96.7 0.0094 2E-07 59.3 9.5 89 130-240 87-178 (254)
256 PRK15455 PrkA family serine pr 96.7 0.0021 4.5E-08 69.5 5.0 46 126-171 76-127 (644)
257 COG2607 Predicted ATPase (AAA+ 96.6 0.0079 1.7E-07 57.1 8.0 49 123-171 57-109 (287)
258 cd01394 radB RadB. The archaea 96.6 0.015 3.2E-07 56.9 10.5 42 146-190 18-59 (218)
259 KOG2123 Uncharacterized conser 96.6 0.0002 4.2E-09 68.9 -2.7 55 494-550 19-73 (388)
260 PRK09354 recA recombinase A; P 96.6 0.0055 1.2E-07 63.1 7.5 87 146-240 59-149 (349)
261 CHL00095 clpC Clp protease ATP 96.6 0.0077 1.7E-07 70.8 9.6 46 126-171 509-563 (821)
262 KOG0727 26S proteasome regulat 96.6 0.26 5.6E-06 47.2 17.7 160 128-311 157-353 (408)
263 PRK05541 adenylylsulfate kinas 96.6 0.0045 9.6E-08 58.2 6.1 36 146-184 6-41 (176)
264 COG0464 SpoVK ATPases of the A 96.6 0.029 6.2E-07 62.3 13.4 151 128-301 244-427 (494)
265 PRK08699 DNA polymerase III su 96.6 0.055 1.2E-06 55.9 14.5 25 147-171 21-45 (325)
266 cd01120 RecA-like_NTPases RecA 96.6 0.013 2.9E-07 53.9 9.3 39 149-190 1-39 (165)
267 PRK08939 primosomal protein Dn 96.5 0.0091 2E-07 61.1 8.5 115 130-265 135-259 (306)
268 KOG0743 AAA+-type ATPase [Post 96.5 0.26 5.6E-06 51.7 18.8 149 148-335 236-416 (457)
269 KOG0735 AAA+-type ATPase [Post 96.5 0.0058 1.3E-07 66.6 7.2 160 147-330 431-617 (952)
270 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.0099 2.2E-07 53.9 7.7 117 148-268 3-139 (159)
271 PRK06547 hypothetical protein; 96.5 0.0037 7.9E-08 58.2 5.0 36 136-171 4-39 (172)
272 PRK10733 hflB ATP-dependent me 96.5 0.015 3.2E-07 66.3 10.9 168 128-322 154-356 (644)
273 cd03238 ABC_UvrA The excision 96.5 0.0091 2E-07 55.7 7.6 124 146-281 20-161 (176)
274 PF08423 Rad51: Rad51; InterP 96.5 0.012 2.7E-07 58.6 9.0 57 147-204 38-97 (256)
275 KOG1969 DNA replication checkp 96.5 0.0063 1.4E-07 66.6 7.2 72 147-241 326-399 (877)
276 PRK11034 clpA ATP-dependent Cl 96.5 0.0062 1.3E-07 69.9 7.5 45 127-171 459-512 (758)
277 COG2884 FtsE Predicted ATPase 96.5 0.016 3.5E-07 53.1 8.5 125 146-274 27-204 (223)
278 COG0572 Udk Uridine kinase [Nu 96.4 0.0086 1.9E-07 56.8 7.0 79 146-230 7-85 (218)
279 KOG0744 AAA+-type ATPase [Post 96.4 0.0067 1.5E-07 59.9 6.2 81 147-240 177-261 (423)
280 cd03247 ABCC_cytochrome_bd The 96.4 0.015 3.3E-07 54.7 8.6 127 146-281 27-169 (178)
281 KOG0737 AAA+-type ATPase [Post 96.4 0.038 8.1E-07 56.1 11.5 50 126-178 92-155 (386)
282 KOG0738 AAA+-type ATPase [Post 96.4 0.035 7.6E-07 56.5 11.2 44 128-171 214-269 (491)
283 TIGR02238 recomb_DMC1 meiotic 96.4 0.02 4.3E-07 58.8 9.8 59 147-206 96-157 (313)
284 PRK13531 regulatory ATPase Rav 96.4 0.011 2.3E-07 63.3 8.0 44 126-171 20-63 (498)
285 PHA00729 NTP-binding motif con 96.4 0.0047 1E-07 59.3 4.8 35 137-171 7-41 (226)
286 PF14532 Sigma54_activ_2: Sigm 96.3 0.0037 8.1E-08 56.0 3.9 43 129-171 1-45 (138)
287 PF01695 IstB_IS21: IstB-like 96.3 0.011 2.5E-07 55.3 7.3 74 146-240 46-119 (178)
288 COG1618 Predicted nucleotide k 96.3 0.0048 1E-07 54.8 4.1 24 148-171 6-29 (179)
289 cd01121 Sms Sms (bacterial rad 96.3 0.021 4.6E-07 60.0 9.7 83 147-239 82-168 (372)
290 PRK14722 flhF flagellar biosyn 96.3 0.017 3.7E-07 60.3 8.9 88 147-239 137-225 (374)
291 PRK00771 signal recognition pa 96.3 0.027 5.9E-07 60.3 10.6 89 146-238 94-184 (437)
292 COG4608 AppF ABC-type oligopep 96.3 0.019 4E-07 56.2 8.5 125 146-275 38-178 (268)
293 cd03115 SRP The signal recogni 96.3 0.017 3.6E-07 54.1 8.0 23 149-171 2-24 (173)
294 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.028 6E-07 55.7 9.9 48 146-198 20-67 (237)
295 PRK10463 hydrogenase nickel in 96.2 0.017 3.8E-07 57.8 8.2 33 139-171 96-128 (290)
296 PF00485 PRK: Phosphoribulokin 96.2 0.0038 8.3E-08 59.7 3.4 83 149-233 1-87 (194)
297 PF13238 AAA_18: AAA domain; P 96.2 0.0038 8.2E-08 55.1 3.1 22 150-171 1-22 (129)
298 COG1875 NYN ribonuclease and A 96.2 0.0099 2.1E-07 59.9 6.0 52 130-181 228-279 (436)
299 KOG1947 Leucine rich repeat pr 96.2 0.0041 9E-08 68.9 3.9 209 493-716 187-416 (482)
300 PF13306 LRR_5: Leucine rich r 96.1 0.017 3.6E-07 51.0 7.1 117 490-613 8-127 (129)
301 PRK06067 flagellar accessory p 96.1 0.036 7.9E-07 54.8 10.2 88 146-239 24-130 (234)
302 cd02019 NK Nucleoside/nucleoti 96.1 0.0044 9.6E-08 47.8 2.8 23 149-171 1-23 (69)
303 COG0465 HflB ATP-dependent Zn 96.1 0.043 9.3E-07 60.3 11.2 172 126-324 150-356 (596)
304 cd03214 ABC_Iron-Siderophores_ 96.1 0.018 3.9E-07 54.3 7.5 121 146-270 24-161 (180)
305 COG0194 Gmk Guanylate kinase [ 96.1 0.019 4.2E-07 52.6 7.2 24 148-171 5-28 (191)
306 TIGR03499 FlhF flagellar biosy 96.1 0.023 5.1E-07 57.6 8.8 88 146-238 193-281 (282)
307 TIGR02239 recomb_RAD51 DNA rep 96.1 0.032 6.9E-07 57.5 9.7 59 146-205 95-156 (316)
308 cd03223 ABCD_peroxisomal_ALDP 96.1 0.029 6.2E-07 52.1 8.6 125 146-281 26-160 (166)
309 PRK14723 flhF flagellar biosyn 96.1 0.3 6.6E-06 55.7 18.0 88 147-239 185-273 (767)
310 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.02 4.3E-07 51.7 7.3 104 146-271 25-131 (144)
311 PLN03187 meiotic recombination 96.1 0.027 5.8E-07 58.3 9.0 59 147-206 126-187 (344)
312 PRK07667 uridine kinase; Provi 96.1 0.0082 1.8E-07 57.3 4.9 37 135-171 3-41 (193)
313 PRK08233 hypothetical protein; 96.1 0.0053 1.1E-07 58.1 3.6 25 147-171 3-27 (182)
314 KOG2123 Uncharacterized conser 96.0 0.00093 2E-08 64.4 -1.6 93 478-570 25-123 (388)
315 TIGR01425 SRP54_euk signal rec 96.0 0.14 3.1E-06 54.5 14.3 26 146-171 99-124 (429)
316 PRK09270 nucleoside triphospha 96.0 0.0077 1.7E-07 59.3 4.7 27 145-171 31-57 (229)
317 PTZ00301 uridine kinase; Provi 96.0 0.0059 1.3E-07 58.7 3.6 25 147-171 3-27 (210)
318 PRK05480 uridine/cytidine kina 96.0 0.0066 1.4E-07 58.9 4.0 27 145-171 4-30 (209)
319 PF00560 LRR_1: Leucine Rich R 96.0 0.0025 5.5E-08 36.5 0.6 20 566-585 2-21 (22)
320 TIGR02858 spore_III_AA stage I 96.0 0.054 1.2E-06 54.2 10.5 124 136-270 99-232 (270)
321 PRK04301 radA DNA repair and r 96.0 0.033 7.1E-07 57.8 9.3 57 146-204 101-161 (317)
322 cd03228 ABCC_MRP_Like The MRP 96.0 0.022 4.7E-07 53.2 7.2 26 146-171 27-52 (171)
323 PF13671 AAA_33: AAA domain; P 96.0 0.0062 1.3E-07 54.9 3.4 23 149-171 1-23 (143)
324 KOG1947 Leucine rich repeat pr 95.9 0.0037 8.1E-08 69.3 2.2 189 513-714 185-389 (482)
325 TIGR00554 panK_bact pantothena 95.9 0.047 1E-06 55.2 9.8 27 145-171 60-86 (290)
326 COG1066 Sms Predicted ATP-depe 95.9 0.052 1.1E-06 56.0 10.0 96 135-240 79-179 (456)
327 cd03216 ABC_Carb_Monos_I This 95.9 0.011 2.3E-07 54.8 4.8 116 146-271 25-146 (163)
328 PF00154 RecA: recA bacterial 95.9 0.15 3.2E-06 52.1 13.3 96 137-240 40-142 (322)
329 PRK13765 ATP-dependent proteas 95.9 0.014 2.9E-07 65.6 6.4 76 124-204 29-104 (637)
330 PRK10867 signal recognition pa 95.9 0.034 7.3E-07 59.5 9.1 26 146-171 99-124 (433)
331 COG1136 SalX ABC-type antimicr 95.9 0.036 7.9E-07 53.2 8.4 57 216-273 147-209 (226)
332 cd03246 ABCC_Protease_Secretio 95.9 0.017 3.8E-07 54.0 6.2 25 147-171 28-52 (173)
333 PRK11889 flhF flagellar biosyn 95.9 0.04 8.6E-07 57.3 9.0 89 146-239 240-330 (436)
334 TIGR00390 hslU ATP-dependent p 95.9 0.019 4E-07 60.2 6.7 46 126-171 12-71 (441)
335 PF07726 AAA_3: ATPase family 95.8 0.0061 1.3E-07 52.5 2.6 28 150-180 2-29 (131)
336 PRK06762 hypothetical protein; 95.8 0.0076 1.7E-07 56.0 3.5 25 147-171 2-26 (166)
337 TIGR00959 ffh signal recogniti 95.8 0.038 8.2E-07 59.1 9.1 92 146-239 98-192 (428)
338 TIGR02030 BchI-ChlI magnesium 95.8 0.014 3E-07 60.5 5.6 48 124-171 2-49 (337)
339 TIGR00708 cobA cob(I)alamin ad 95.8 0.046 9.9E-07 50.3 8.4 118 147-267 5-140 (173)
340 KOG0729 26S proteasome regulat 95.8 0.015 3.3E-07 55.7 5.4 88 129-240 180-281 (435)
341 cd03222 ABC_RNaseL_inhibitor T 95.8 0.029 6.2E-07 52.5 7.2 26 146-171 24-49 (177)
342 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.051 1.1E-06 53.1 9.1 122 148-271 31-203 (254)
343 PF10236 DAP3: Mitochondrial r 95.8 0.2 4.3E-06 51.6 14.0 49 278-326 258-306 (309)
344 PF13481 AAA_25: AAA domain; P 95.8 0.038 8.2E-07 52.7 8.3 42 148-189 33-81 (193)
345 COG1102 Cmk Cytidylate kinase 95.8 0.014 3.1E-07 51.9 4.6 44 149-206 2-45 (179)
346 PRK03839 putative kinase; Prov 95.8 0.0077 1.7E-07 56.8 3.3 23 149-171 2-24 (180)
347 cd02025 PanK Pantothenate kina 95.8 0.043 9.3E-07 53.4 8.6 23 149-171 1-23 (220)
348 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0083 1.8E-07 57.0 3.5 26 146-171 2-27 (188)
349 KOG0735 AAA+-type ATPase [Post 95.7 0.17 3.8E-06 55.6 13.5 148 148-323 702-870 (952)
350 TIGR00235 udk uridine kinase. 95.7 0.0088 1.9E-07 57.9 3.7 26 146-171 5-30 (207)
351 PRK14527 adenylate kinase; Pro 95.7 0.015 3.2E-07 55.5 5.1 26 146-171 5-30 (191)
352 TIGR00064 ftsY signal recognit 95.7 0.057 1.2E-06 54.3 9.5 91 145-239 70-164 (272)
353 COG0468 RecA RecA/RadA recombi 95.7 0.041 8.8E-07 55.0 8.2 90 146-239 59-151 (279)
354 TIGR00150 HI0065_YjeE ATPase, 95.7 0.016 3.5E-07 50.8 4.8 38 134-171 7-46 (133)
355 PRK14974 cell division protein 95.7 0.088 1.9E-06 54.4 10.9 91 146-240 139-233 (336)
356 PRK04328 hypothetical protein; 95.7 0.034 7.3E-07 55.4 7.7 41 146-189 22-62 (249)
357 PRK13407 bchI magnesium chelat 95.7 0.012 2.7E-07 60.7 4.6 48 124-171 6-53 (334)
358 COG0396 sufC Cysteine desulfur 95.7 0.049 1.1E-06 51.7 8.0 64 216-279 149-216 (251)
359 CHL00081 chlI Mg-protoporyphyr 95.7 0.011 2.4E-07 61.1 4.2 48 124-171 15-62 (350)
360 PF00910 RNA_helicase: RNA hel 95.6 0.0079 1.7E-07 51.1 2.6 22 150-171 1-22 (107)
361 KOG0651 26S proteasome regulat 95.6 0.03 6.5E-07 55.2 6.7 26 146-171 165-190 (388)
362 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.055 1.2E-06 53.3 9.0 40 146-188 19-58 (229)
363 cd01129 PulE-GspE PulE/GspE Th 95.6 0.033 7.2E-07 55.8 7.4 104 129-245 62-165 (264)
364 PLN03186 DNA repair protein RA 95.6 0.084 1.8E-06 54.8 10.5 59 146-205 122-183 (342)
365 PRK08972 fliI flagellum-specif 95.6 0.027 5.8E-07 59.7 6.9 90 146-240 161-263 (444)
366 PF00006 ATP-synt_ab: ATP synt 95.6 0.062 1.3E-06 51.7 8.9 97 138-239 5-115 (215)
367 PF01583 APS_kinase: Adenylyls 95.6 0.013 2.9E-07 52.9 4.0 36 147-185 2-37 (156)
368 KOG3347 Predicted nucleotide k 95.6 0.017 3.7E-07 50.5 4.4 34 147-188 7-40 (176)
369 PRK05342 clpX ATP-dependent pr 95.6 0.035 7.7E-07 59.2 7.8 45 127-171 72-132 (412)
370 PTZ00088 adenylate kinase 1; P 95.6 0.01 2.2E-07 58.0 3.4 23 149-171 8-30 (229)
371 KOG0726 26S proteasome regulat 95.6 0.081 1.7E-06 51.7 9.2 44 128-171 187-243 (440)
372 COG1428 Deoxynucleoside kinase 95.6 0.023 5E-07 53.3 5.4 47 147-199 4-50 (216)
373 PRK04040 adenylate kinase; Pro 95.6 0.011 2.4E-07 55.9 3.5 25 147-171 2-26 (188)
374 PRK11823 DNA repair protein Ra 95.6 0.048 1E-06 59.1 8.8 94 136-239 67-166 (446)
375 PRK05201 hslU ATP-dependent pr 95.5 0.027 5.9E-07 59.1 6.5 46 126-171 15-74 (443)
376 TIGR02236 recomb_radA DNA repa 95.5 0.047 1E-06 56.5 8.4 56 147-204 95-154 (310)
377 PRK07132 DNA polymerase III su 95.5 0.52 1.1E-05 48.0 15.5 168 134-328 4-184 (299)
378 PRK06002 fliI flagellum-specif 95.5 0.041 8.8E-07 58.6 7.8 89 147-240 165-265 (450)
379 PRK00625 shikimate kinase; Pro 95.5 0.011 2.4E-07 55.0 3.1 23 149-171 2-24 (173)
380 PTZ00035 Rad51 protein; Provis 95.5 0.15 3.3E-06 53.0 11.9 58 146-205 117-178 (337)
381 cd02027 APSK Adenosine 5'-phos 95.5 0.05 1.1E-06 49.4 7.4 23 149-171 1-23 (149)
382 PRK12726 flagellar biosynthesi 95.5 0.079 1.7E-06 55.0 9.4 89 146-239 205-295 (407)
383 cd03230 ABC_DR_subfamily_A Thi 95.5 0.026 5.7E-07 52.8 5.7 118 147-271 26-159 (173)
384 TIGR00764 lon_rel lon-related 95.4 0.04 8.7E-07 62.1 7.9 76 124-204 16-91 (608)
385 KOG2170 ATPase of the AAA+ sup 95.4 0.027 5.8E-07 55.4 5.6 99 128-241 84-190 (344)
386 COG1419 FlhF Flagellar GTP-bin 95.4 0.12 2.5E-06 53.8 10.5 99 135-238 187-290 (407)
387 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.01 2.3E-07 56.1 2.8 23 149-171 1-23 (183)
388 PRK08533 flagellar accessory p 95.4 0.082 1.8E-06 51.9 9.1 48 147-199 24-71 (230)
389 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.053 1.1E-06 49.8 7.4 115 147-272 25-145 (157)
390 PRK12597 F0F1 ATP synthase sub 95.4 0.043 9.3E-07 58.9 7.6 92 146-239 142-247 (461)
391 PRK12678 transcription termina 95.4 0.027 5.9E-07 60.9 6.0 98 138-239 406-513 (672)
392 PRK06217 hypothetical protein; 95.4 0.013 2.9E-07 55.3 3.4 24 148-171 2-25 (183)
393 cd02023 UMPK Uridine monophosp 95.4 0.011 2.4E-07 56.8 2.8 23 149-171 1-23 (198)
394 PRK05986 cob(I)alamin adenolsy 95.4 0.058 1.3E-06 50.4 7.4 119 146-268 21-159 (191)
395 COG0541 Ffh Signal recognition 95.3 0.77 1.7E-05 48.1 16.1 59 146-207 99-158 (451)
396 cd02024 NRK1 Nicotinamide ribo 95.3 0.012 2.5E-07 55.4 2.8 23 149-171 1-23 (187)
397 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.07 1.5E-06 53.5 8.6 40 146-188 35-74 (259)
398 PRK12723 flagellar biosynthesi 95.3 0.067 1.4E-06 56.4 8.7 90 146-239 173-264 (388)
399 TIGR03498 FliI_clade3 flagella 95.3 0.042 9E-07 58.4 7.1 91 146-240 139-241 (418)
400 PRK00131 aroK shikimate kinase 95.3 0.015 3.3E-07 54.4 3.6 25 147-171 4-28 (175)
401 TIGR02902 spore_lonB ATP-depen 95.3 0.024 5.3E-07 62.9 5.6 46 126-171 65-110 (531)
402 PRK12724 flagellar biosynthesi 95.3 0.057 1.2E-06 56.9 7.9 25 147-171 223-247 (432)
403 PRK08149 ATP synthase SpaL; Va 95.3 0.062 1.3E-06 57.2 8.2 90 146-240 150-252 (428)
404 PF06309 Torsin: Torsin; Inte 95.3 0.029 6.3E-07 48.2 4.6 45 127-171 26-77 (127)
405 TIGR00416 sms DNA repair prote 95.2 0.089 1.9E-06 57.1 9.6 51 135-188 80-132 (454)
406 TIGR02322 phosphon_PhnN phosph 95.2 0.016 3.5E-07 54.6 3.3 24 148-171 2-25 (179)
407 PF06745 KaiC: KaiC; InterPro 95.2 0.021 4.5E-07 56.2 4.2 88 146-239 18-125 (226)
408 PF00625 Guanylate_kin: Guanyl 95.2 0.028 6E-07 53.2 4.9 36 147-185 2-37 (183)
409 PRK09519 recA DNA recombinatio 95.2 0.055 1.2E-06 61.7 8.0 86 146-239 59-148 (790)
410 TIGR00382 clpX endopeptidase C 95.2 0.08 1.7E-06 56.2 8.7 45 127-171 78-140 (413)
411 cd01135 V_A-ATPase_B V/A-type 95.2 0.074 1.6E-06 52.8 7.9 95 146-240 68-177 (276)
412 PRK05439 pantothenate kinase; 95.2 0.15 3.2E-06 52.0 10.3 27 145-171 84-110 (311)
413 PF03205 MobB: Molybdopterin g 95.2 0.027 5.8E-07 50.4 4.4 39 148-188 1-39 (140)
414 TIGR01420 pilT_fam pilus retra 95.2 0.028 6.1E-07 58.9 5.3 111 146-268 121-231 (343)
415 TIGR03575 selen_PSTK_euk L-ser 95.1 0.063 1.4E-06 55.4 7.6 22 150-171 2-23 (340)
416 cd02028 UMPK_like Uridine mono 95.1 0.019 4.1E-07 54.0 3.5 23 149-171 1-23 (179)
417 COG1124 DppF ABC-type dipeptid 95.1 0.026 5.5E-07 54.1 4.3 26 146-171 32-57 (252)
418 PRK10751 molybdopterin-guanine 95.1 0.021 4.5E-07 52.7 3.6 26 146-171 5-30 (173)
419 PRK05922 type III secretion sy 95.1 0.063 1.4E-06 57.1 7.7 90 146-240 156-258 (434)
420 COG0563 Adk Adenylate kinase a 95.1 0.017 3.6E-07 54.0 3.1 23 149-171 2-24 (178)
421 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.053 1.2E-06 52.1 6.7 25 146-170 25-49 (200)
422 PRK14721 flhF flagellar biosyn 95.1 0.12 2.6E-06 54.9 9.8 87 147-238 191-278 (420)
423 PRK05973 replicative DNA helic 95.1 0.13 2.8E-06 50.3 9.2 49 146-199 63-111 (237)
424 cd00544 CobU Adenosylcobinamid 95.1 0.11 2.4E-06 48.1 8.4 80 149-238 1-82 (169)
425 COG1703 ArgK Putative periplas 95.1 0.034 7.4E-07 54.9 5.2 59 136-195 38-98 (323)
426 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.029 6.2E-07 57.3 4.8 46 126-171 61-112 (358)
427 KOG1532 GTPase XAB1, interacts 95.1 0.023 5.1E-07 54.8 3.9 26 146-171 18-43 (366)
428 PF12775 AAA_7: P-loop contain 95.1 0.021 4.5E-07 57.5 3.8 88 136-239 23-110 (272)
429 cd03369 ABCC_NFT1 Domain 2 of 95.1 0.13 2.9E-06 49.6 9.4 26 146-171 33-58 (207)
430 PRK00279 adk adenylate kinase; 95.0 0.033 7.2E-07 54.2 5.1 23 149-171 2-24 (215)
431 cd00227 CPT Chloramphenicol (C 95.0 0.019 4.2E-07 53.8 3.3 24 148-171 3-26 (175)
432 cd02020 CMPK Cytidine monophos 95.0 0.017 3.7E-07 52.3 2.8 23 149-171 1-23 (147)
433 PF03308 ArgK: ArgK protein; 95.0 0.037 8.1E-07 53.8 5.2 57 134-191 14-72 (266)
434 PRK05800 cobU adenosylcobinami 95.0 0.091 2E-06 48.8 7.7 83 148-238 2-85 (170)
435 cd00071 GMPK Guanosine monopho 95.0 0.019 4.2E-07 51.2 3.1 23 149-171 1-23 (137)
436 cd01125 repA Hexameric Replica 95.0 0.15 3.2E-06 50.6 9.7 23 149-171 3-25 (239)
437 PF13086 AAA_11: AAA domain; P 95.0 0.046 9.9E-07 53.9 6.2 35 135-171 7-41 (236)
438 PRK15453 phosphoribulokinase; 95.0 0.13 2.8E-06 51.2 9.0 27 145-171 3-29 (290)
439 PRK14530 adenylate kinase; Pro 95.0 0.019 4.2E-07 55.9 3.3 24 148-171 4-27 (215)
440 PF01078 Mg_chelatase: Magnesi 95.0 0.04 8.7E-07 52.1 5.2 44 126-171 3-46 (206)
441 PRK13949 shikimate kinase; Pro 95.0 0.02 4.4E-07 53.2 3.3 24 148-171 2-25 (169)
442 cd02021 GntK Gluconate kinase 95.0 0.017 3.7E-07 52.6 2.8 23 149-171 1-23 (150)
443 PRK05703 flhF flagellar biosyn 95.0 0.074 1.6E-06 57.2 7.9 87 147-238 221-308 (424)
444 PRK13947 shikimate kinase; Pro 95.0 0.021 4.6E-07 53.3 3.4 23 149-171 3-25 (171)
445 COG0003 ArsA Predicted ATPase 94.9 0.038 8.2E-07 56.6 5.3 49 147-198 2-50 (322)
446 COG1936 Predicted nucleotide k 94.9 0.019 4.1E-07 51.9 2.8 20 149-168 2-21 (180)
447 PRK15429 formate hydrogenlyase 94.9 0.056 1.2E-06 62.5 7.4 46 126-171 376-423 (686)
448 PRK09280 F0F1 ATP synthase sub 94.9 0.13 2.8E-06 55.2 9.4 93 146-240 143-249 (463)
449 PF00158 Sigma54_activat: Sigm 94.9 0.039 8.3E-07 51.1 4.9 44 128-171 1-46 (168)
450 TIGR01351 adk adenylate kinase 94.9 0.033 7.2E-07 53.9 4.6 22 150-171 2-23 (210)
451 TIGR03263 guanyl_kin guanylate 94.9 0.021 4.5E-07 53.9 3.1 24 148-171 2-25 (180)
452 PF13245 AAA_19: Part of AAA d 94.8 0.033 7.2E-07 43.7 3.6 25 146-170 9-33 (76)
453 PF02562 PhoH: PhoH-like prote 94.8 0.028 6.1E-07 53.4 3.8 52 131-185 5-56 (205)
454 PRK00889 adenylylsulfate kinas 94.8 0.029 6.3E-07 52.6 3.9 25 147-171 4-28 (175)
455 PF08477 Miro: Miro-like prote 94.8 0.023 5.1E-07 49.2 3.0 22 150-171 2-23 (119)
456 PF03215 Rad17: Rad17 cell cyc 94.8 0.03 6.5E-07 61.4 4.5 54 127-185 20-78 (519)
457 PRK06995 flhF flagellar biosyn 94.8 0.12 2.5E-06 56.0 8.8 59 147-206 256-315 (484)
458 PRK08927 fliI flagellum-specif 94.8 0.077 1.7E-06 56.6 7.3 90 146-240 157-259 (442)
459 PRK10416 signal recognition pa 94.8 0.3 6.5E-06 50.3 11.4 26 146-171 113-138 (318)
460 PF03266 NTPase_1: NTPase; In 94.8 0.024 5.2E-07 52.5 3.1 22 150-171 2-23 (168)
461 TIGR00073 hypB hydrogenase acc 94.8 0.03 6.6E-07 54.1 4.0 30 142-171 17-46 (207)
462 PF08433 KTI12: Chromatin asso 94.8 0.036 7.9E-07 55.5 4.6 24 148-171 2-25 (270)
463 COG0714 MoxR-like ATPases [Gen 94.8 0.062 1.4E-06 56.1 6.6 62 127-196 25-86 (329)
464 cd00820 PEPCK_HprK Phosphoenol 94.7 0.028 6.1E-07 47.1 3.1 22 147-168 15-36 (107)
465 TIGR01039 atpD ATP synthase, F 94.7 0.092 2E-06 56.0 7.6 93 146-240 142-248 (461)
466 PF03029 ATP_bind_1: Conserved 94.7 0.038 8.2E-07 54.4 4.4 34 152-188 1-34 (238)
467 COG0467 RAD55 RecA-superfamily 94.7 0.036 7.8E-07 55.8 4.4 50 146-200 22-71 (260)
468 cd00464 SK Shikimate kinase (S 94.7 0.026 5.6E-07 51.6 3.1 22 150-171 2-23 (154)
469 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.2 4.4E-06 61.7 11.0 26 146-171 1629-1654(2281)
470 PRK06936 type III secretion sy 94.6 0.087 1.9E-06 56.1 7.3 90 146-240 161-263 (439)
471 PRK00300 gmk guanylate kinase; 94.6 0.027 5.8E-07 54.4 3.3 26 146-171 4-29 (205)
472 PRK12339 2-phosphoglycerate ki 94.6 0.031 6.7E-07 53.2 3.6 25 147-171 3-27 (197)
473 cd02029 PRK_like Phosphoribulo 94.6 0.087 1.9E-06 51.9 6.7 79 149-230 1-85 (277)
474 COG3640 CooC CO dehydrogenase 94.6 0.056 1.2E-06 51.4 5.1 42 149-192 2-43 (255)
475 TIGR01313 therm_gnt_kin carboh 94.6 0.023 5.1E-07 52.5 2.6 22 150-171 1-22 (163)
476 TIGR01040 V-ATPase_V1_B V-type 94.6 0.12 2.5E-06 55.1 7.9 93 146-239 140-257 (466)
477 PRK10078 ribose 1,5-bisphospho 94.6 0.028 6E-07 53.3 3.1 24 148-171 3-26 (186)
478 PRK05057 aroK shikimate kinase 94.5 0.032 6.9E-07 52.1 3.4 25 147-171 4-28 (172)
479 PTZ00185 ATPase alpha subunit; 94.5 0.16 3.4E-06 54.6 8.8 93 146-240 188-300 (574)
480 PRK14529 adenylate kinase; Pro 94.5 0.13 2.8E-06 49.9 7.6 22 150-171 3-24 (223)
481 PF03193 DUF258: Protein of un 94.5 0.051 1.1E-06 49.4 4.5 36 133-171 24-59 (161)
482 COG0488 Uup ATPase components 94.5 0.18 4E-06 55.5 9.6 129 149-283 350-511 (530)
483 KOG1051 Chaperone HSP104 and r 94.5 0.15 3.2E-06 58.8 9.1 102 126-241 562-672 (898)
484 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.084 1.8E-06 56.4 6.7 93 146-240 137-243 (449)
485 PRK13948 shikimate kinase; Pro 94.5 0.038 8.2E-07 51.8 3.7 26 146-171 9-34 (182)
486 TIGR01069 mutS2 MutS2 family p 94.5 0.042 9.1E-07 63.6 4.8 114 228-351 401-522 (771)
487 PRK14737 gmk guanylate kinase; 94.5 0.035 7.5E-07 52.5 3.5 26 146-171 3-28 (186)
488 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.029 6.4E-07 54.3 3.0 23 147-169 29-51 (213)
489 PF05970 PIF1: PIF1-like helic 94.4 0.078 1.7E-06 56.1 6.5 38 134-171 9-46 (364)
490 PLN02200 adenylate kinase fami 94.4 0.036 7.8E-07 54.5 3.6 26 146-171 42-67 (234)
491 cd01122 GP4d_helicase GP4d_hel 94.4 0.28 6.1E-06 49.6 10.3 52 147-202 30-81 (271)
492 PF02374 ArsA_ATPase: Anion-tr 94.4 0.043 9.3E-07 56.3 4.2 46 148-196 2-47 (305)
493 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.11 2.4E-06 51.6 6.7 89 147-240 69-172 (274)
494 PRK13975 thymidylate kinase; P 94.3 0.038 8.3E-07 52.9 3.5 24 148-171 3-26 (196)
495 COG1126 GlnQ ABC-type polar am 94.3 0.036 7.8E-07 52.1 3.0 35 147-185 28-62 (240)
496 PF13504 LRR_7: Leucine rich r 94.3 0.029 6.3E-07 29.7 1.4 16 565-580 2-17 (17)
497 COG1116 TauB ABC-type nitrate/ 94.3 0.037 7.9E-07 53.5 3.1 25 146-170 28-52 (248)
498 PRK03846 adenylylsulfate kinas 94.2 0.044 9.6E-07 52.5 3.8 27 145-171 22-48 (198)
499 PRK13946 shikimate kinase; Pro 94.2 0.042 9.1E-07 52.0 3.5 25 147-171 10-34 (184)
500 cd01124 KaiC KaiC is a circadi 94.2 0.048 1E-06 51.7 4.0 45 149-198 1-45 (187)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-91 Score=790.68 Aligned_cols=684 Identities=43% Similarity=0.729 Sum_probs=580.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhccccccc----------------ccc
Q 038398 10 TVLQAQLPKLIESKNDVMARVANAEQQQMRRLNTVQGWLSRVEAMETEVGELMKDGSQEVD----------------KLC 73 (720)
Q Consensus 10 ~~l~~~l~~l~~~l~~i~~~v~~ae~~~~~~~~~~~~wl~~~~~~~~~~~d~ld~~~~~~~----------------~~~ 73 (720)
...+..+.+|+..+..++..+++|+.++.. ...+..|.+.+++++|+++|+++.+..+.. +.|
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 333445555555555566666667666543 256789999999999999999988765431 224
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHHhhcCCcccccc-cCCCccccCCCCCCC--cCchHHHHHHHHHhcCCCceEE
Q 038398 74 PGGCCSKNCRSSFEFGKRVAKTLQLVNNLMGEGAFDAVAE-KVPRPAVDQRPCEPT--VGLESTFDKVWRCLGEEQVGII 150 (720)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--vGr~~~~~~l~~~L~~~~~~vi 150 (720)
..+.|++.....+.+++++.+.++.++.+..++.|..+.. ..+...+..+|.... ||.+..++++++.|.+++..++
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv 182 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIV 182 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEE
Confidence 4466666777778899999999999999988877766654 222223333333333 9999999999999999888999
Q ss_pred EEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCc
Q 038398 151 GLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKK 230 (720)
Q Consensus 151 ~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~ 230 (720)
+|+||||+||||||+.++|+...++++|+.++||.||+.++...++++|+..++.....+.....++.+..|.+.|+++|
T Consensus 183 ~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~kr 262 (889)
T KOG4658|consen 183 GIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKR 262 (889)
T ss_pred EEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCc
Confidence 99999999999999999999944899999999999999999999999999999987665566566889999999999999
Q ss_pred EEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChH
Q 038398 231 FLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIP 309 (720)
Q Consensus 231 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~ 309 (720)
|+|||||||+..+|+.++.++|...+||||++|||+..||.. |++...++++.|+++|||+||++.++......++.++
T Consensus 263 fllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~ 342 (889)
T KOG4658|consen 263 FLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIE 342 (889)
T ss_pred eEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHH
Confidence 999999999999999999999999899999999999999998 8888999999999999999999999988656667799
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhcc-cCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcC
Q 038398 310 ELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRRS-ASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGL 388 (720)
Q Consensus 310 ~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~ 388 (720)
++|++++++|+|+|||++++|+.|+.+.+.++|+++.+.+.+. ..+.+++.+.++.+|++||+.||. ++|.||+|||+
T Consensus 343 ~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycal 421 (889)
T KOG4658|consen 343 ELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCAL 421 (889)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999887 666677778999999999999996 99999999999
Q ss_pred CCCCcccChHHHHHHHHhhCCCCccc-chhhHHhHHHHHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHHh
Q 038398 389 FPEDYRIRKSELIDCWIGEGFLDQYD-RSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIAC 467 (720)
Q Consensus 389 fp~~~~i~~~~li~~Wiaeg~~~~~~-~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 467 (720)
||+|++|+++.|+.+||||||+.+.+ ...++++|+.|+.+|++++|++.... .++..+|+|||+|||+|.++|+
T Consensus 422 FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~-----~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 422 FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD-----EGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc-----ccceeEEEeeHHHHHHHHHHhc
Confidence 99999999999999999999999955 77889999999999999999998752 1457899999999999999999
Q ss_pred hhccccccEEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCC--CcCcchHHhccCCcccEE
Q 038398 468 KIEKEKENFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNS--LKMSTDDFFQSMPSLRVF 545 (720)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L 545 (720)
+.+.+++++++..+.+..+.|...++..+|++++.+|.+..++....+++|++|.+.+|. +..++..+|..|+.|++|
T Consensus 497 ~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVL 576 (889)
T KOG4658|consen 497 DFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVL 576 (889)
T ss_pred cccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEE
Confidence 988888888888877777788899999999999999999998888899999999999995 788889999999999999
Q ss_pred EccCCCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCC
Q 038398 546 NMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGS 625 (720)
Q Consensus 546 ~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~ 625 (720)
||++|...+.+|..|+.|.+||||+++++.++++|.++.+|.+|.+||+..+..+..+|. +...|++|++|.+..-...
T Consensus 577 DLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 577 DLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS 655 (889)
T ss_pred ECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc
Confidence 999998899999999999999999999999999999999999999999999877777755 4677999999999864411
Q ss_pred cccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcce
Q 038398 626 KIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNK 705 (720)
Q Consensus 626 ~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~ 705 (720)
.+.....++..+++|+.+........-+..+.......+..+.+.+.+|... +.. .++..+.+|+.
T Consensus 656 ------------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~-~~~~~l~~L~~ 721 (889)
T KOG4658|consen 656 ------------NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLI-SSLGSLGNLEE 721 (889)
T ss_pred ------------cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eee-cccccccCcce
Confidence 1455677788888899888876555333444444444455566665543332 332 47788999999
Q ss_pred eeecCCCCCc
Q 038398 706 LYVAGCKHLE 715 (720)
Q Consensus 706 L~l~~c~~l~ 715 (720)
|.+.+|...+
T Consensus 722 L~i~~~~~~e 731 (889)
T KOG4658|consen 722 LSILDCGISE 731 (889)
T ss_pred EEEEcCCCch
Confidence 9999998764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-58 Score=549.37 Aligned_cols=543 Identities=22% Similarity=0.269 Sum_probs=394.3
Q ss_pred CCCcCchHHHHHHHHHhc--CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEe---cCc-----------
Q 038398 126 EPTVGLESTFDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVV---SKD----------- 189 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---~~~----------- 189 (720)
+++|||++.++++..+|. .+++++|+||||||+||||||+++|++. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 679999999999999884 3578999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChh
Q 038398 190 LQ-LEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 190 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
.. ...++++++..+....+. ... ....+++.+.++|+||||||||+..+|+.+.....+.+.||+||||||+..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~-~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDI-KIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCc-ccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 123445555554322110 111 125677889999999999999999889888766666788999999999999
Q ss_pred HhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHH
Q 038398 269 ICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQV 348 (720)
Q Consensus 269 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~ 348 (720)
++..++..++|+++.|++++||+||+++||... .++.++.+++++|+++|+|+|||++++|+.|++ ++..+|+.++++
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 998877788999999999999999999999765 445568899999999999999999999999997 578999999999
Q ss_pred HhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHHHHH
Q 038398 349 LRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIGI 428 (720)
Q Consensus 349 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~ 428 (720)
++.... ..+..+|++||+.|+++..|.||+++|+||.+..++ .+..|++.+.... ...++.
T Consensus 414 L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~ 474 (1153)
T PLN03210 414 LRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKN 474 (1153)
T ss_pred HHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHH
Confidence 876432 489999999999998745899999999999887554 4777888765432 223888
Q ss_pred HHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHHhhhc--cccccEEEEcC---------CC-------------C
Q 038398 429 LLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIACKIE--KEKENFLVHAG---------LG-------------L 484 (720)
Q Consensus 429 L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~~~--~~~~~~~~~~~---------~~-------------~ 484 (720)
|+++||++.. ...+.|||++|+||+++++++. ..+..|+.... .+ .
T Consensus 475 L~~ksLi~~~----------~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~ 544 (1153)
T PLN03210 475 LVDKSLIHVR----------EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI 544 (1153)
T ss_pred HHhcCCEEEc----------CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc
Confidence 9999999765 3469999999999999997642 11222332110 00 0
Q ss_pred c----cCccccccc-------------------------------ceeEEEecccccccCCCCCCCCcccEEEccCCCCc
Q 038398 485 T----EAPEIQNWR-------------------------------NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLK 529 (720)
Q Consensus 485 ~----~~~~~~~~~-------------------------------~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 529 (720)
. ....+..++ +||.|.+.++.+..+|....+.+|+.|++.+|.+.
T Consensus 545 ~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 545 DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc
Confidence 0 000122233 45666666666666666556778999999998888
Q ss_pred CcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC-CCcccchhhhcCCCCCEEeccCCcCCCCCchhhh
Q 038398 530 MSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST-AITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVI 608 (720)
Q Consensus 530 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~ 608 (720)
.++.. +..+++|++|+|++|..+..+| .++.+++|++|+|++| .+..+|.+++++++|+.|++++|+.+..+|..
T Consensus 625 ~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-- 700 (1153)
T PLN03210 625 KLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-- 700 (1153)
T ss_pred ccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--
Confidence 77765 6789999999999987777888 4888999999999987 58899999999999999999999999999974
Q ss_pred hccccCceeeccccCCCc--------ccchhcccccCCccccHHH------------------------------hcCCC
Q 038398 609 SAFSKLQVLRMFDCGGSK--------IERLKINVLFGGHQFLVEE------------------------------LMGMK 650 (720)
Q Consensus 609 ~~l~~L~~L~~~~~~~~~--------l~~l~~~~~~~~~~~~~~~------------------------------l~~l~ 650 (720)
..+++|+.|.+.+|+... +..+...... -...+.. ....+
T Consensus 701 i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~--i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA--IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc--cccccccccccccccccccccchhhccccccccchhhhhccc
Confidence 378899999998875421 1111000000 0000000 00113
Q ss_pred CCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCccc
Q 038398 651 HLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDS 717 (720)
Q Consensus 651 ~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i 717 (720)
+|+.|.++.+. .+..++.+...+++|+.|++++|+++..+|.. .++++|+.|++++|..++.+
T Consensus 779 sL~~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 779 SLTRLFLSDIP--SLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cchheeCCCCC--CccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCccccc
Confidence 44444444332 12233444455567777777777777776622 25677777777777766544
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6e-46 Score=382.13 Aligned_cols=281 Identities=35% Similarity=0.621 Sum_probs=233.1
Q ss_pred chHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC
Q 038398 131 LESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE 208 (720)
Q Consensus 131 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 208 (720)
||+++++|.++|.+ ++.++|+|+||||+||||||+.++++. .++.+|+.++|+.++...+...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 689999999999999999999999995 358999999999999999999999999999988754
Q ss_pred cc-CCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhhhcc-CceeeccCCCh
Q 038398 209 SW-KNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGALKA-HEFLKVECLGP 286 (720)
Q Consensus 209 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~~-~~~~~l~~L~~ 286 (720)
.. ...+.++....+.+.+.++++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++|++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 45677889999999999999999999999999998888777777789999999999998877665 67899999999
Q ss_pred hhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhcccCCCCCCCccchhh
Q 038398 287 EDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRRSASEFPGMGKEVYPL 366 (720)
Q Consensus 287 ~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 366 (720)
+||++||++.++......++..++++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998865423445667889999999999999999999999766678999999998888765544455689999
Q ss_pred HHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcc
Q 038398 367 LKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQY 413 (720)
Q Consensus 367 l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~ 413 (720)
+.+||+.||+ ++|.||+|||+||+++.|+++.++++|++|||+...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.61 E-value=2.1e-15 Score=181.69 Aligned_cols=221 Identities=23% Similarity=0.266 Sum_probs=127.6
Q ss_pred cccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 492 NWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
.+++|++|++++|.+........+++|++|++++|.+....+..++++++|++|+|++|.+.+.+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 55666666666666654333345666777777776665444444666777777777777666666666777777777777
Q ss_pred cCCCCc-ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCccc--------chhcccc--cCCcc
Q 038398 572 SSTAIT-HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIE--------RLKINVL--FGGHQ 640 (720)
Q Consensus 572 ~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~--------~l~~~~~--~~~~~ 640 (720)
++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|++|++.++...... .+..-.. .....
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 776654 45666677777777777665433345553 566666666666554321100 0000000 00011
Q ss_pred ccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCcc
Q 038398 641 FLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLED 716 (720)
Q Consensus 641 ~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 716 (720)
..+..+..+++|+.|+++.|.... .++.....+++|+.|++++|.....++ ..+.++++|+.|++++|.....
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCchhHhhccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCc
Confidence 233455666777777776665432 122333345677788877754333443 5577788888888888765433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=3.9e-16 Score=153.90 Aligned_cols=223 Identities=29% Similarity=0.386 Sum_probs=162.7
Q ss_pred cCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 486 EAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 486 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
-+|.+..+.++..|++..|++..+|++++|..|..|.+..|.+..+|......+++|.+|||..| .+.+.|..++-|.+
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrs 276 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRS 276 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhh
Confidence 35677888889999999999999999999999999999999999999888889999999999999 66799999999999
Q ss_pred CCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhh--------------------------------------
Q 038398 566 LEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLV-------------------------------------- 607 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~-------------------------------------- 607 (720)
|.+||+++|.|+.+|.+++++ .|+.|-+.|| .+..+...+
T Consensus 277 L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 999999999999999999999 8999988874 222211110
Q ss_pred ---hhccccCcee-----------------------eccccCCCcccchhccc---------------------------
Q 038398 608 ---ISAFSKLQVL-----------------------RMFDCGGSKIERLKINV--------------------------- 634 (720)
Q Consensus 608 ---~~~l~~L~~L-----------------------~~~~~~~~~l~~l~~~~--------------------------- 634 (720)
...+.+.+.| ...+++.|++.++|-..
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 1111122222 22234455555544111
Q ss_pred --------ccCCccccHHHhcCCCCCceeEEEecchhhHHHHhh--------------------h-hhhhhhcccccccc
Q 038398 635 --------LFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLI--------------------S-QELQRSTQSLFLRC 685 (720)
Q Consensus 635 --------~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~--------------------~-~~~~~~L~~L~l~~ 685 (720)
.++.-...+.+++.+..|+.|++++|.+..++.+.- + ...+.+|..|++.+
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred hcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 001112346677777888999998887755544321 1 23566888889887
Q ss_pred ccCCCccccccccccCCcceeeecCCCC
Q 038398 686 FNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 686 ~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
|.+.++| ..+++|.+|++|+|.||+-
T Consensus 515 -Ndlq~IP-p~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 515 -NDLQQIP-PILGNMTNLRHLELDGNPF 540 (565)
T ss_pred -CchhhCC-hhhccccceeEEEecCCcc
Confidence 6677887 6789999999999999884
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=8.2e-15 Score=176.54 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=141.0
Q ss_pred ccccceeEEEeccccccc-CCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 491 QNWRNVRRMSLMKNKIEN-LSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
..+++|++|++++|.+.. +|. +..+++|++|++++|.+....+..+.++++|++|+|++|.+.+.+|..++++.+|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345667777777776643 232 356677777777777665554455677777777777777666667777777777777
Q ss_pred EeccCCCCc-ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCccc--------chhcccc--cC
Q 038398 569 LDLSSTAIT-HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIE--------RLKINVL--FG 637 (720)
Q Consensus 569 L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~--------~l~~~~~--~~ 637 (720)
|+|++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|+.|.+.++...... .+..-.. ..
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 777777665 56666777777777777765433345543 666666766666554321100 0000000 01
Q ss_pred CccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCC
Q 038398 638 GHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHL 714 (720)
Q Consensus 638 ~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 714 (720)
.....+..+..+++|+.|.+..|.+... ++.....+++|+.|++++|+....+| ..++.+++|+.|++++|..-
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeE
Confidence 1223455678899999999998876532 23334456799999999866544555 67889999999999998643
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=8.8e-16 Score=158.12 Aligned_cols=221 Identities=23% Similarity=0.262 Sum_probs=145.9
Q ss_pred cccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
+++..-.++.+|+|.+|.|..+. .+.++.+|.+|.|+.|.++.+|...|+++++|+.|+|..|++...-...|.+|++
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 34555568899999999988764 3467778999999999999999988999999999999999554332556778888
Q ss_pred CCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccc----------
Q 038398 566 LEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINV---------- 634 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~---------- 634 (720)
|+.|.|..|.|..+..+ |..|.++++|+|.. |++..+..+.+-+|++|+.|+++ +|.|.+++...
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS---~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLS---YNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccc---hhhhheeecchhhhcccceeE
Confidence 88888888888777554 66777778888777 45566655444445555444443 34444443211
Q ss_pred ---ccCCccccHHHhcCCCCCceeEEEecchhhHHH-------------------------Hhhhhhhhhhccccccccc
Q 038398 635 ---LFGGHQFLVEELMGMKHLMVLTITLKSWQALKE-------------------------LLISQELQRSTQSLFLRCF 686 (720)
Q Consensus 635 ---~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~-------------------------l~~~~~~~~~L~~L~l~~~ 686 (720)
++..+......+..+.+|+.|.++.|.+..+.+ -...++.+++|+.|.+.+
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g- 401 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG- 401 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-
Confidence 111122223333444444555555444433321 112234566777787777
Q ss_pred cCCCccccccccccCCcceeeecCCCC
Q 038398 687 NDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 687 ~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
|+++.++...|.++++|+.|+|.+|..
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcc
Confidence 778888888888899999999988873
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=3.3e-16 Score=162.05 Aligned_cols=218 Identities=25% Similarity=0.368 Sum_probs=158.1
Q ss_pred ccEEEEcCCCCccCc-ccccccceeEEEecccccccCC-CCCCCCcccEEEccCCCC--cCcchHHhccCCcccEEEccC
Q 038398 474 ENFLVHAGLGLTEAP-EIQNWRNVRRMSLMKNKIENLS-ETPTCPHLLSLFLSDNSL--KMSTDDFFQSMPSLRVFNMSN 549 (720)
Q Consensus 474 ~~~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~ 549 (720)
-.|+......+..+| .+..+.+|.+|++..|.+..+. .++.++.||++.+..|++ .++|++ +-.|.-|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 367777776666665 5678889999999999886653 458889999999998855 467777 45689999999999
Q ss_pred CCCCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCccc
Q 038398 550 NHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIE 628 (720)
Q Consensus 550 ~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~ 628 (720)
| .+.+.|..+..-.++-.|+||+|+|..+|.. +.+|+.|-+|||++ |.+..+|+. +..|..|++|.+++..-+.
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h-- 187 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLNH-- 187 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhhH--
Confidence 9 5568999999999999999999999999976 77899999999998 788889885 7888888888777533222
Q ss_pred chhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeee
Q 038398 629 RLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYV 708 (720)
Q Consensus 629 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l 708 (720)
..+..+.++++|++|.+++..- .+..++.+...+.+|..++++. |++..+| .++-++++|+.|+|
T Consensus 188 ------------fQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 188 ------------FQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNL 252 (1255)
T ss_pred ------------HHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheecc
Confidence 1233444555555555553322 2344455555556667777663 5566665 55666667777777
Q ss_pred cCCC
Q 038398 709 AGCK 712 (720)
Q Consensus 709 ~~c~ 712 (720)
++|.
T Consensus 253 S~N~ 256 (1255)
T KOG0444|consen 253 SGNK 256 (1255)
T ss_pred CcCc
Confidence 6665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.54 E-value=1.1e-15 Score=158.38 Aligned_cols=217 Identities=24% Similarity=0.214 Sum_probs=136.0
Q ss_pred cccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC-CccCCccccCCCCCCEE
Q 038398 492 NWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL-LWKLPSGISTLVSLEHL 569 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~lp~~i~~l~~L~~L 569 (720)
++..|-.|+|++|.+..+|+. ..+.+|++|.+++|.+....-.-+..|++|.+|.+++++- ...+|.++..|.+|+.+
T Consensus 148 nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 334444455555555444432 3444555555555544333222233445555555555432 23467777777788888
Q ss_pred eccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccccc-------------
Q 038398 570 DLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLF------------- 636 (720)
Q Consensus 570 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~------------- 636 (720)
++|.|.+..+|+.+-++++|+.|+|++ |.++.+... .+.+.+|++|+++ .|+++.+|...+.
T Consensus 228 DlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~-~~~W~~lEtLNlS---rNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 228 DLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMT-EGEWENLETLNLS---RNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred cccccCCCcchHHHhhhhhhheeccCc-Cceeeeecc-HHHHhhhhhhccc---cchhccchHHHhhhHHHHHHHhccCc
Confidence 888887777887777788888888877 556666554 5556666655544 4555555532110
Q ss_pred CCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCcc
Q 038398 637 GGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLED 716 (720)
Q Consensus 637 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 716 (720)
-....++.+++.+.+|+.+....|.+.-. +.....+..|+.|.|+. |.+.++| ..+.-++.|+.|++.+|++|--
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LElV---PEglcRC~kL~kL~L~~-NrLiTLP-eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLELV---PEGLCRCVKLQKLKLDH-NRLITLP-EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccccC---chhhhhhHHHHHhcccc-cceeech-hhhhhcCCcceeeccCCcCccC
Confidence 01233566777778887777776665433 44555667899999984 8888888 7888899999999999999875
Q ss_pred cc
Q 038398 717 SQ 718 (720)
Q Consensus 717 i~ 718 (720)
.|
T Consensus 378 PP 379 (1255)
T KOG0444|consen 378 PP 379 (1255)
T ss_pred CC
Confidence 54
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-15 Score=157.11 Aligned_cols=101 Identities=27% Similarity=0.360 Sum_probs=43.6
Q ss_pred eeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccC
Q 038398 496 VRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSS 573 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (720)
+..|+|..|.|..+.+ +..++.|++|+|+.|.+..++...|..=.++++|+|++|++...--..|.+|.+|-+|.|+.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 4444444444443322 13344444444444444444433333334444444444433332233344444444444444
Q ss_pred CCCcccchh-hhcCCCCCEEeccC
Q 038398 574 TAITHLPIE-LQKLVNLKCLNLEY 596 (720)
Q Consensus 574 ~~i~~lp~~-i~~l~~L~~L~l~~ 596 (720)
|+|+.+|.- |.+|++|+.|+|..
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccc
Confidence 444444432 33344444444444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.52 E-value=8e-14 Score=168.31 Aligned_cols=125 Identities=28% Similarity=0.351 Sum_probs=86.6
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC-CCCCCcccEEEccCCC-CcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNS-LKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+.+.+......|....+.+|+.|++.+|.+..++. ...+++|+.|++++|. +..+|. +..+++|+.|+|++|....
T Consensus 594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 594 LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred EEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc
Confidence 33444444555555566788888888888776654 3567788888887763 444443 6677888888888877777
Q ss_pred cCCccccCCCCCCEEeccCC-CCcccchhhhcCCCCCEEeccCCcCCCCCc
Q 038398 555 KLPSGISTLVSLEHLDLSST-AITHLPIELQKLVNLKCLNLEYMNNLNQFP 604 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp 604 (720)
.+|..++++++|++|++++| .++.+|..+ ++++|+.|++++|..+..+|
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 77888888888888888776 577777655 67777777777775554444
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=6e-16 Score=135.13 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=101.1
Q ss_pred CCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCC
Q 038398 509 LSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVN 588 (720)
Q Consensus 509 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 588 (720)
++.+.++.+...|.+++|.++.+||. +..+.+|++|++++| .+.++|.+++.++.|+.|++..|++..+|.+|+.++.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 44445556666677777777777666 667777777777777 4457777777777777777777777777777777777
Q ss_pred CCEEeccCCcCC-CCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHH
Q 038398 589 LKCLNLEYMNNL-NQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKE 667 (720)
Q Consensus 589 L~~L~l~~~~~l-~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~ 667 (720)
|+.||+.+++.- +.+|+ ++-.+++|....++.|.++ ..+.+++.+++|+.|.+..|+.-++
T Consensus 104 levldltynnl~e~~lpg----nff~m~tlralyl~dndfe------------~lp~dvg~lt~lqil~lrdndll~l-- 165 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE------------ILPPDVGKLTNLQILSLRDNDLLSL-- 165 (264)
T ss_pred hhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc------------cCChhhhhhcceeEEeeccCchhhC--
Confidence 777777774321 22443 2323333444444445422 3445567777777777766665433
Q ss_pred HhhhhhhhhhccccccccccCCCccc
Q 038398 668 LLISQELQRSTQSLFLRCFNDSKSLD 693 (720)
Q Consensus 668 l~~~~~~~~~L~~L~l~~~~~l~~l~ 693 (720)
+...+.++.|+.|++.+ +.++.+|
T Consensus 166 -pkeig~lt~lrelhiqg-nrl~vlp 189 (264)
T KOG0617|consen 166 -PKEIGDLTRLRELHIQG-NRLTVLP 189 (264)
T ss_pred -cHHHHHHHHHHHHhccc-ceeeecC
Confidence 34445556777777776 5566665
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=5.7e-12 Score=151.13 Aligned_cols=298 Identities=16% Similarity=0.201 Sum_probs=183.0
Q ss_pred cCCCCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHH
Q 038398 121 DQRPCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKI 199 (720)
Q Consensus 121 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i 199 (720)
+|+....+|-|..-.+.+-.. ...+++.|.|++|.||||++..+.+.. . .++|+++.. +.+...+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHH
Confidence 344446778888766666432 356899999999999999999988643 1 589999964 45666677777
Q ss_pred HHHhCCCCCc-----------cCCCChhHHHHHHHHHhc--cCcEEEEEecccccc--ccc-cccccCCCCCCCcEEEEE
Q 038398 200 GRRIGFFDES-----------WKNGSLEDKTSDILRILG--KKKFLLLLDDIWERV--DLT-KVGIPFPDPENKSKIVFT 263 (720)
Q Consensus 200 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~l~~~~~~~~~gs~iiiT 263 (720)
+..+...... ....+.......+...+. +.+++|||||+.... ... .+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777421111 001122233333444333 579999999996532 111 222122233456788899
Q ss_pred cCChhHhh--hh-ccCceeecc----CCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcC
Q 038398 264 THFLEICG--AL-KAHEFLKVE----CLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACK 336 (720)
Q Consensus 264 tR~~~v~~--~~-~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~ 336 (720)
||...-.. .. ......++. +|+.+|+.+||....+.. --.+...+|.+.|+|.|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 99743211 11 112244555 999999999998765432 124567899999999999999988777543
Q ss_pred CChhHHHHHHHHHhcccCCCCCC-CccchhhHHh-hcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCccc
Q 038398 337 KTPQEWHYAIQVLRRSASEFPGM-GKEVYPLLKF-SYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYD 414 (720)
Q Consensus 337 ~~~~~w~~~l~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~ 414 (720)
..... .....+ .+. ...+...+.- .++.||+ ..+.++...|+++ .++.. +.. .+..
T Consensus 233 ~~~~~--~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~--- 290 (903)
T PRK04841 233 NSSLH--DSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG--- 290 (903)
T ss_pred CCchh--hhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC---
Confidence 21100 111111 110 1234444433 4789999 8999999999996 33332 221 1111
Q ss_pred chhhHHhHHHHHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHH
Q 038398 415 RSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIA 466 (720)
Q Consensus 415 ~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 466 (720)
.+.+...+++|...+++.... ++....|+.|++++++.+...
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~------~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRM------DDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEee------cCCCCEEehhHHHHHHHHHHH
Confidence 123467799999999865321 111346888999999988765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=4.2e-15 Score=129.86 Aligned_cols=163 Identities=28% Similarity=0.418 Sum_probs=117.8
Q ss_pred CccCcccccccceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccC
Q 038398 484 LTEAPEIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGIST 562 (720)
Q Consensus 484 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~ 562 (720)
+.+++.+.++.++.+|.++.|++..+|. +..+.+|++|++++|.+..+|.. ++.+++|+.|+++.|+ ...+|..|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhh-hhcCccccCC
Confidence 3455666677778888888888876654 47778888888888888888776 7788888888888774 4477888888
Q ss_pred CCCCCEEeccCCCCc--ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCcc
Q 038398 563 LVSLEHLDLSSTAIT--HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQ 640 (720)
Q Consensus 563 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~ 640 (720)
++.|+.|+|.+|.+. .+|..|-.++.|+.|++++ +.++-+|+. ++++++|+.|.+.+ |.+.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrd---ndll------------ 163 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRD---NDLL------------ 163 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeecc---Cchh------------
Confidence 888888888888765 5777777778888888877 556777775 77777777776554 3332
Q ss_pred ccHHHhcCCCCCceeEEEecchhhH
Q 038398 641 FLVEELMGMKHLMVLTITLKSWQAL 665 (720)
Q Consensus 641 ~~~~~l~~l~~L~~L~~~~~~~~~l 665 (720)
..+.+++.+++|+.|.+.+|..+.+
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeec
Confidence 2345667777777777777665443
No 15
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.42 E-value=4.4e-11 Score=128.75 Aligned_cols=294 Identities=16% Similarity=0.086 Sum_probs=173.4
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGR 201 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 201 (720)
+.++||++++++|...+.+ .....+.|+|++|+|||++++.+++... .....-.++|+++....+...++..++.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 6789999999999888733 3456788999999999999999999872 2222235677777777778889999999
Q ss_pred HhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEecccccc------ccccccccCCCCCCCcE--EEEEcCChhHhh
Q 038398 202 RIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERV------DLTKVGIPFPDPENKSK--IVFTTHFLEICG 271 (720)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--iiiTtR~~~v~~ 271 (720)
++..........+.++....+.+.+. +++.+||||+++... .+..+...+. ...+++ +|.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 98652211123345667777777775 356899999997632 1222211111 112333 555655443322
Q ss_pred hh-------ccCceeeccCCChhhHHHHHHHHhccCc---cCCCCChHHHHHHHHHHhCCcchHHHHHHHHH--h--cC-
Q 038398 272 AL-------KAHEFLKVECLGPEDAWRLFRENLRRDV---LDNHPDIPELARSVAQECAGLPLALITIGRAM--A--CK- 336 (720)
Q Consensus 272 ~~-------~~~~~~~l~~L~~~e~~~Lf~~~~~~~~---~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~--~~- 336 (720)
.. .....+.+++++.++..+++..++.... .-.+..++.+++......|..+.|+.++-.+. + .+
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 11 1134678999999999999998874321 11111222333333333455778887765432 1 11
Q ss_pred --CChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCC--CcccChHHHHHH--HHhhCCC
Q 038398 337 --KTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPE--DYRIRKSELIDC--WIGEGFL 410 (720)
Q Consensus 337 --~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~--~~~i~~~~li~~--Wiaeg~~ 410 (720)
-+.+....+.+.+.. ....-.+..||. +.|..+..++..-+ ...+....+... .+++.+-
T Consensus 268 ~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 244455555544311 223446778988 56655554443211 134555555532 2332221
Q ss_pred CcccchhhHHhHHHHHHHHHHhcccccc
Q 038398 411 DQYDRSGAYNEGYYIIGILLHACLLEEE 438 (720)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~~sll~~~ 438 (720)
. ..........++++|...+++...
T Consensus 334 ~---~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 Y---EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C---CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 011234567789999999999865
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=2.5e-12 Score=144.34 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 651 HLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 651 ~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
+|+.|++++|.+..++. .+.+|+.|++++ |.++.+| ..+.++++|+.|+|++|+-
T Consensus 403 ~L~~LdLS~N~LssIP~------l~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 403 ELKELMVSGNRLTSLPM------LPSGLLSLSVYR-NQLTRLP-ESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCCEEEccCCcCCCCCc------chhhhhhhhhcc-CcccccC-hHHhhccCCCeEECCCCCC
Confidence 45556666655544332 234677888887 6677887 5688899999999999974
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=5.5e-10 Score=118.99 Aligned_cols=296 Identities=15% Similarity=0.102 Sum_probs=171.5
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc---CEEEEEEecCcCCHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF---DVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~~~~~~~~~~ 198 (720)
+.++||++++++|..++.+ .....+.|+|++|+|||++++.+++...+..... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999998853 3456799999999999999999998762111111 24677887777777889999
Q ss_pred HHHHhC---CCCCccCCCChhHHHHHHHHHhc--cCcEEEEEecccccc-c----cccccccC-CCCC--CCcEEEEEcC
Q 038398 199 IGRRIG---FFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERV-D----LTKVGIPF-PDPE--NKSKIVFTTH 265 (720)
Q Consensus 199 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~l~~~~-~~~~--~gs~iiiTtR 265 (720)
++.++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|+
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 22111 22234555566666663 467899999997641 1 11221110 1111 2234455554
Q ss_pred ChhHhhhh-------ccCceeeccCCChhhHHHHHHHHhccC--ccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH--
Q 038398 266 FLEICGAL-------KAHEFLKVECLGPEDAWRLFRENLRRD--VLDNHPDIPELARSVAQECAGLPL-ALITIGRAM-- 333 (720)
Q Consensus 266 ~~~v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l-- 333 (720)
.......+ .....+.+++++.++..+++..++... ....+++..+....++..+.|.|- |+.++-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33321111 112468899999999999999887421 111222333445556777778774 444432221
Q ss_pred --hcC---CChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCC--CCCcccChHHHHHHH--
Q 038398 334 --ACK---KTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLF--PEDYRIRKSELIDCW-- 404 (720)
Q Consensus 334 --~~~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~f--p~~~~i~~~~li~~W-- 404 (720)
..+ -+.+..+.+.+.+. .....-++..||. +.+..+..++.. .++..+...++...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 111 23333444333321 1223345667887 666555444321 134456666666633
Q ss_pred HhhCCCCcccchhhHHhHHHHHHHHHHhccccccC
Q 038398 405 IGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEG 439 (720)
Q Consensus 405 iaeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (720)
+++.+ .. ....+.....++..|...|++....
T Consensus 320 ~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-GV--DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 22211 10 1233467788899999999998764
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=3.4e-14 Score=140.38 Aligned_cols=213 Identities=25% Similarity=0.300 Sum_probs=160.4
Q ss_pred CcccccccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 487 APEIQNWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 487 ~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
++.+..+.++.+++++.|++..+|.. ..+..|+.|+++.|.+..++++ ++.+-.|..|+..+| .+..+|..++++..
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N-~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNN-QISSLPEDMVNLSK 161 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccc-ccccCchHHHHHHH
Confidence 45667777788888888888877654 6778888899999988888877 667778888888888 45588888888888
Q ss_pred CCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccc-c---------
Q 038398 566 LEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINV-L--------- 635 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~-~--------- 635 (720)
|..|++.+|+++.+|+..-+++.|++||... +.++.+|+. ++.+.+ |...++..|++..+|.-. +
T Consensus 162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~---L~~LyL~~Nki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLES---LELLYLRRNKIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred HHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhh---hHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence 8889999999998888877788999999877 577888875 555554 555555567766655210 0
Q ss_pred cCCccccHH-HhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 636 FGGHQFLVE-ELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 636 ~~~~~~~~~-~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
.+.-...+. .+.++++|-+|++..|.+... +.....+++|..|++++ |.++.+| .+++++ +|+.|-+.|||
T Consensus 237 ~N~i~~lpae~~~~L~~l~vLDLRdNklke~---Pde~clLrsL~rLDlSN-N~is~Lp-~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 237 ENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV---PDEICLLRSLERLDLSN-NDISSLP-YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccHHHhhHHHHhcccccceeeeccccccccC---chHHHHhhhhhhhcccC-CccccCC-cccccc-eeeehhhcCCc
Confidence 000112233 344788899999988876544 45566777999999998 7788998 788999 99999999998
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.30 E-value=1.1e-11 Score=123.25 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=104.5
Q ss_pred CcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH---------
Q 038398 128 TVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK--------- 198 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~--------- 198 (720)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. . ...+ .++|+..........+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999987667899999999999999999999986 1 1222 3445544443322211111
Q ss_pred ----HHHHhCCCCC-c---cCCCChhHHHHHHHHHhcc--CcEEEEEecccccc-ccc-------cccccCCC--CCCCc
Q 038398 199 ----IGRRIGFFDE-S---WKNGSLEDKTSDILRILGK--KKFLLLLDDIWERV-DLT-------KVGIPFPD--PENKS 258 (720)
Q Consensus 199 ----i~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~-~~~-------~l~~~~~~--~~~gs 258 (720)
+...+..... . ............+.+.+.. ++++||+||+.... ... .+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111111000 0 0111223334444444433 46999999997654 111 11111111 22334
Q ss_pred EEEEEcCChhHhhh--------hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 259 KIVFTTHFLEICGA--------LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 259 ~iiiTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
.+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555554544332 1223458999999999999999876543 122 22356679999999999998864
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.7e-11 Score=138.55 Aligned_cols=137 Identities=23% Similarity=0.322 Sum_probs=95.5
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL 556 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (720)
+...+.+...+|.. -.++++.|++++|.+..+|... +++|++|++++|.++.+|.... ++|+.|+|++|.+ ..+
T Consensus 183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L-~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRI-TEL 256 (754)
T ss_pred EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh---ccccEEECcCCcc-CcC
Confidence 34444455555542 1357899999999998877542 3689999999999888876532 4789999999954 477
Q ss_pred CccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccch
Q 038398 557 PSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERL 630 (720)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l 630 (720)
|..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.... ++|+.|++. .|.+..+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp---~sL~~L~Ls---~N~Lt~L 319 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP---SGITHLNVQ---SNSLTAL 319 (754)
T ss_pred ChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch---hhHHHHHhc---CCccccC
Confidence 87664 579999999999998887654 58999999884 6777775322 244555444 3444433
No 21
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=7.6e-10 Score=112.52 Aligned_cols=181 Identities=17% Similarity=0.182 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
.+.+++.|+|++|+||||+++.+++.. .. ... .++|+ +....+..+++..++..++.+.. ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 345689999999999999999999886 21 211 22333 23345677889999998876532 2222333334433
Q ss_pred Hh-----ccCcEEEEEecccccc--ccccccccC--C-CCCCCcEEEEEcCChhHhhhhc----------cCceeeccCC
Q 038398 225 IL-----GKKKFLLLLDDIWERV--DLTKVGIPF--P-DPENKSKIVFTTHFLEICGALK----------AHEFLKVECL 284 (720)
Q Consensus 225 ~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~--~-~~~~gs~iiiTtR~~~v~~~~~----------~~~~~~l~~L 284 (720)
.+ .+++.++|+||++... .++.+.... . .......|++|.... ....+. ....++++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 32 5688999999998642 333332111 1 112233455555432 211111 1345789999
Q ss_pred ChhhHHHHHHHHhccCccC-CCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 038398 285 GPEDAWRLFRENLRRDVLD-NHPDIPELARSVAQECAGLPLALITIGRAM 333 (720)
Q Consensus 285 ~~~e~~~Lf~~~~~~~~~~-~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 333 (720)
+.+|..+++...+...... ...-..+..+.|++.++|.|..|+.++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999998877543211 112346789999999999999999998765
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=4.3e-12 Score=138.33 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=30.6
Q ss_pred cccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchH
Q 038398 492 NWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDD 534 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 534 (720)
...++.+++++.|.+..+|+. ..|.+|..|...+|.+..++..
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r 282 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR 282 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH
Confidence 345788888888888877754 6677788877777766555543
No 23
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=3.5e-10 Score=117.89 Aligned_cols=274 Identities=15% Similarity=0.093 Sum_probs=146.8
Q ss_pred CCCcCchHHHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLG-----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
.+|+|+++.++.+..++. ......+.|+|++|+||||||+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 678999999999877774 2345678899999999999999999987 2 221 1222111 11111222333
Q ss_pred HHhCCCC----CccCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhhh--c
Q 038398 201 RRIGFFD----ESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGAL--K 274 (720)
Q Consensus 201 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~--~ 274 (720)
..+.... ++.... .....+.+...+.+.+..+|+|+..+...+.. .++ ..+-|..|++...+.... .
T Consensus 98 ~~l~~~~vl~IDEi~~l-~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRL-SPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhc-chHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHh
Confidence 3332110 000000 01122234444555555566665443322211 111 234455666654432221 1
Q ss_pred cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhcccC
Q 038398 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRRSAS 354 (720)
Q Consensus 275 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 354 (720)
....++++++++++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|.... .....
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCC
Confidence 13468999999999999999887754322 2356789999999999965555443321 111100 00000
Q ss_pred CCCCCCccchhhHHhhcCCCCCcchhHHHH-hhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHHHH-HHHHh
Q 038398 355 EFPGMGKEVYPLLKFSYDSLPDDTIRSYLL-YCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIG-ILLHA 432 (720)
Q Consensus 355 ~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl-~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~-~L~~~ 432 (720)
.. ..-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|++.
T Consensus 239 ~~-~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 239 TK-EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CH-HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHHHc
Confidence 00 0001233344556677777 4556654 56666654 45554443322 112234555566 89999
Q ss_pred ccccccC
Q 038398 433 CLLEEEG 439 (720)
Q Consensus 433 sll~~~~ 439 (720)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997654
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.17 E-value=1.7e-09 Score=118.19 Aligned_cols=306 Identities=18% Similarity=0.194 Sum_probs=193.4
Q ss_pred CCccccCCCCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHH
Q 038398 116 PRPAVDQRPCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEK 194 (720)
Q Consensus 116 ~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~ 194 (720)
++..+.|.++.+.|-|..-.+.+.+. .+.+.+.|..|+|.|||||+..+.... ..-..+.|.++.. +.++..
T Consensus 9 ~sk~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~r 81 (894)
T COG2909 9 PSKLVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPAR 81 (894)
T ss_pred ccccCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHH
Confidence 34445555566778887666665442 367999999999999999999998733 2334789999876 457888
Q ss_pred HHHHHHHHhCCCCCcc-----------CCCChhHHHHHHHHHhcc--CcEEEEEeccccc--cccc-cccccCCCCCCCc
Q 038398 195 IQEKIGRRIGFFDESW-----------KNGSLEDKTSDILRILGK--KKFLLLLDDIWER--VDLT-KVGIPFPDPENKS 258 (720)
Q Consensus 195 ~~~~i~~~l~~~~~~~-----------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~--~~~~-~l~~~~~~~~~gs 258 (720)
+...++..++...+.. ...+.......+..-+.. ++..+||||..-. ..+. .+.-.+.....+-
T Consensus 82 F~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l 161 (894)
T COG2909 82 FLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENL 161 (894)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCe
Confidence 8888888887433211 122333344444444433 6899999997532 1121 1211122334578
Q ss_pred EEEEEcCChhHhhh--h-ccCceeec----cCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 038398 259 KIVFTTHFLEICGA--L-KAHEFLKV----ECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGR 331 (720)
Q Consensus 259 ~iiiTtR~~~v~~~--~-~~~~~~~l----~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 331 (720)
.+|+|||+..-+.. + -.....++ -.++.+|+.++|....+.+- -+.-.+.+....+|-+-|+..++=
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHH
Confidence 89999998643221 1 11122333 36899999999988754322 245588899999999999999887
Q ss_pred HHhcCCChhHHHHHHHHHhcccCCCCCCCccch-hhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCC
Q 038398 332 AMACKKTPQEWHYAIQVLRRSASEFPGMGKEVY-PLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFL 410 (720)
Q Consensus 332 ~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~-~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~ 410 (720)
.++.+.+.+.--..+ .+..+-+. ....--++.||+ +++.+++-||+++.= -..|+..
T Consensus 236 a~~~~~~~~q~~~~L----------sG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~------- 293 (894)
T COG2909 236 ALRNNTSAEQSLRGL----------SGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNA------- 293 (894)
T ss_pred HccCCCcHHHHhhhc----------cchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHH-------
Confidence 777433332221111 11111222 222345789999 899999999998531 1223332
Q ss_pred CcccchhhHHhHHHHHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHHh
Q 038398 411 DQYDRSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIAC 467 (720)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 467 (720)
-+.++.|...+++|.+++|+-..- +....-|+.|.++.||-+.-..
T Consensus 294 -----Ltg~~ng~amLe~L~~~gLFl~~L------dd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 294 -----LTGEENGQAMLEELERRGLFLQRL------DDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred -----HhcCCcHHHHHHHHHhCCCceeee------cCCCceeehhHHHHHHHHhhhc
Confidence 223456778899999999865321 1226678999999999776543
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=4.5e-12 Score=138.22 Aligned_cols=198 Identities=23% Similarity=0.295 Sum_probs=128.0
Q ss_pred cccceeEEEecccccccCCCCC-CCCcccEEEccCCCCcCcchHHhc-------------------------cCCcccEE
Q 038398 492 NWRNVRRMSLMKNKIENLSETP-TCPHLLSLFLSDNSLKMSTDDFFQ-------------------------SMPSLRVF 545 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-------------------------~l~~L~~L 545 (720)
...+|+.|++..|.++.+|... ..+.|++|++..|.+..+|+.+|. .++.|+.|
T Consensus 285 ~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence 3344555555555555555442 355566666666555555544332 34456677
Q ss_pred EccCCCCCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCC
Q 038398 546 NMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGG 624 (720)
Q Consensus 546 ~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~ 624 (720)
.+.+|.+.......+-+..+|+.|+|++|.+..+|.+ +.++..|++|+|+| |.++.+|.. +..+..|++|... .
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~t-va~~~~L~tL~ah---s 439 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDT-VANLGRLHTLRAH---S 439 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHH-HHhhhhhHHHhhc---C
Confidence 7777766665555677888888888888888888866 77888888888888 677888864 6677766666543 4
Q ss_pred CcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhh-hhccccccccccCCCccccccccccCCc
Q 038398 625 SKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQ-RSTQSLFLRCFNDSKSLDIFCLAGLRNL 703 (720)
Q Consensus 625 ~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~l~~l~~~~l~~l~~L 703 (720)
|.+.. +.++..+++|+.++++.|++.... .....+ ++|+.|+++++.. ..++...|..++++
T Consensus 440 N~l~~-------------fPe~~~l~qL~~lDlS~N~L~~~~---l~~~~p~p~LkyLdlSGN~~-l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 440 NQLLS-------------FPELAQLPQLKVLDLSCNNLSEVT---LPEALPSPNLKYLDLSGNTR-LVFDHKTLKVLKSL 502 (1081)
T ss_pred Cceee-------------chhhhhcCcceEEecccchhhhhh---hhhhCCCcccceeeccCCcc-cccchhhhHHhhhh
Confidence 55432 236778889999999888776543 222223 6899999987443 45555566666666
Q ss_pred ceeeecCC
Q 038398 704 NKLYVAGC 711 (720)
Q Consensus 704 ~~L~l~~c 711 (720)
...++.=+
T Consensus 503 ~~~~i~~~ 510 (1081)
T KOG0618|consen 503 SQMDITLN 510 (1081)
T ss_pred hheecccC
Confidence 66655433
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.12 E-value=3.2e-09 Score=109.93 Aligned_cols=266 Identities=15% Similarity=0.085 Sum_probs=149.0
Q ss_pred CCCcCchHHHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLG-----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
.+|||+++.++++..++. ......+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 568999999999988885 2345678899999999999999999887 2222 12221111111222 2222
Q ss_pred HHhCCCC----CccCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhhh--c
Q 038398 201 RRIGFFD----ESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGAL--K 274 (720)
Q Consensus 201 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~--~ 274 (720)
..++... ++.... .....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.... .
T Consensus 77 ~~~~~~~vl~iDEi~~l-~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRL-SPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhh-CHHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 2222111 000000 11223445556666666677776555443321 111 244555666754432221 1
Q ss_pred cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhc------C--CChhHHHHHH
Q 038398 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMAC------K--KTPQEWHYAI 346 (720)
Q Consensus 275 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~------~--~~~~~w~~~l 346 (720)
....+++++++.++..+++.+.+..... .--.+....|++.|+|.|-.+..++..+.. . -+.+..+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~--- 223 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL--- 223 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH---
Confidence 1346789999999999999988764331 223567789999999999766555543210 0 0111111
Q ss_pred HHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHH-hhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHH
Q 038398 347 QVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLL-YCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYI 425 (720)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl-~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~ 425 (720)
.....+...|..++. +.+..+. ..+.++.+ .+....+.... | .....+...
T Consensus 224 ---------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~ 275 (305)
T TIGR00635 224 ---------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDV 275 (305)
T ss_pred ---------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHh
Confidence 122224556777877 5565555 44666433 44444333321 1 122355666
Q ss_pred HH-HHHHhccccccC
Q 038398 426 IG-ILLHACLLEEEG 439 (720)
Q Consensus 426 ~~-~L~~~sll~~~~ 439 (720)
++ .|++++|++...
T Consensus 276 ~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 276 YEPYLLQIGFLQRTP 290 (305)
T ss_pred hhHHHHHcCCcccCC
Confidence 77 699999997553
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-11 Score=121.96 Aligned_cols=233 Identities=21% Similarity=0.223 Sum_probs=155.2
Q ss_pred cEEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
..+...+.++.++|.-- ......+.|..|.|+.+|+ +..+++||.|+|++|.+..+.+..|.+++.|..|-+.+|+.
T Consensus 49 ~~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred ceEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 44555566666666422 2356678888899988876 47788999999999999888888899998888887777556
Q ss_pred CccCCc-cccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccC------C
Q 038398 553 LWKLPS-GISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCG------G 624 (720)
Q Consensus 553 ~~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~------~ 624 (720)
+..+|. .|++|..|+-|.+.-|++.-++. .+..|++|..|.+.. +.++.++.+.+..+.+++++.+-... -
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcccccccc
Confidence 667764 57788888888888888876654 478888888888877 56677776556666666666543211 1
Q ss_pred Cc---------------------------ccchhccc---------------ccCCccccHHHhcCCCCCceeEEEecch
Q 038398 625 SK---------------------------IERLKINV---------------LFGGHQFLVEELMGMKHLMVLTITLKSW 662 (720)
Q Consensus 625 ~~---------------------------l~~l~~~~---------------~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 662 (720)
-+ +..++... ..........-+..+++|+.|.++.|.+
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 00 00000000 0001122344577899999999999988
Q ss_pred hhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 663 QALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 663 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
+.+.. .++.....++.|+|.. |.+..+.-..|.++..|+.|+|.+|+
T Consensus 287 ~~i~~--~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 287 TRIED--GAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred chhhh--hhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCe
Confidence 76653 3444445677777766 55666654556667777777777665
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.12 E-value=1.4e-10 Score=131.31 Aligned_cols=212 Identities=18% Similarity=0.194 Sum_probs=132.3
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL 556 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (720)
+...+.....+|.. .+.+|+.|++++|.+..+|.. -.++|+.|++++|.+..+|.... .+|++|++++|++ ..+
T Consensus 204 L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L-~~L 277 (754)
T PRK15370 204 LILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPERLP---SALQSLDLFHNKI-SCL 277 (754)
T ss_pred EEecCCCCCcCChh-hccCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChhHh---CCCCEEECcCCcc-Ccc
Confidence 33444455555532 235899999999998887653 23578999999998888876532 4789999998854 467
Q ss_pred CccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccccc
Q 038398 557 PSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLF 636 (720)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~ 636 (720)
|..+. .+|++|++++|+++.+|..+. ++|+.|++++ +.+..+|... .++|+.|.+.+| .+..++.....
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~l---~~sL~~L~Ls~N---~Lt~LP~~l~~ 346 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPETL---PPGLKTLEAGEN---ALTSLPASLPP 346 (754)
T ss_pred ccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCccc---cccceeccccCC---ccccCChhhcC
Confidence 87664 589999999999888886543 4677777776 4556666432 245555554443 23322211100
Q ss_pred CC---------ccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccc---cccccCCcc
Q 038398 637 GG---------HQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIF---CLAGLRNLN 704 (720)
Q Consensus 637 ~~---------~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~---~l~~l~~L~ 704 (720)
.+ -..++..+ .+.|+.|+++.|.+..++. ..+.+|+.|++++ +++..+|.. .+..++++.
T Consensus 347 sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~-----~l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 347 ELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPE-----NLPAALQIMQASR-NNLVRLPESLPHFRGEGPQPT 418 (754)
T ss_pred cccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCH-----hHHHHHHHHhhcc-CCcccCchhHHHHhhcCCCcc
Confidence 00 00111122 2467788888777665432 1234788888887 556666622 234457888
Q ss_pred eeeecCCCC
Q 038398 705 KLYVAGCKH 713 (720)
Q Consensus 705 ~L~l~~c~~ 713 (720)
.|+|.+|+-
T Consensus 419 ~L~L~~Npl 427 (754)
T PRK15370 419 RIIVEYNPF 427 (754)
T ss_pred EEEeeCCCc
Confidence 999998874
No 29
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.11 E-value=1.4e-09 Score=125.63 Aligned_cols=316 Identities=14% Similarity=0.157 Sum_probs=178.7
Q ss_pred CCcCchHHHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH---HHHHHHH
Q 038398 127 PTVGLESTFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE---KIQEKIG 200 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~---~~~~~i~ 200 (720)
+++||+.+++.|...+.+ +...++.|.|..|||||+|++.|.....+.++.|-...+-....+.... +..+++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 368999999999998854 4567999999999999999999999874332333222222233333322 2333333
Q ss_pred HHh-------------------CCCCCc--------------------cCCCChhHH-----HHHHHHHh-ccCcEEEEE
Q 038398 201 RRI-------------------GFFDES--------------------WKNGSLEDK-----TSDILRIL-GKKKFLLLL 235 (720)
Q Consensus 201 ~~l-------------------~~~~~~--------------------~~~~~~~~~-----~~~l~~~l-~~k~~LlVl 235 (720)
.++ +..... ......+.. ...+..+. +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 111000 000011111 11222222 346999999
Q ss_pred ecc-ccccc-c---ccccccCCC-CCCCcEEEE--EcCCh--hHhhhhccCceeeccCCChhhHHHHHHHHhccCccCCC
Q 038398 236 DDI-WERVD-L---TKVGIPFPD-PENKSKIVF--TTHFL--EICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNH 305 (720)
Q Consensus 236 Ddv-~~~~~-~---~~l~~~~~~-~~~gs~iii--TtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 305 (720)
||+ |-+.. + ..+.....- .-....|.. |.+.. .+.........+.+.||+..+...+.........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 999 54322 1 111111110 000112222 22222 1122223446799999999999999999886532
Q ss_pred CChHHHHHHHHHHhCCcchHHHHHHHHHhcC------CChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcch
Q 038398 306 PDIPELARSVAQECAGLPLALITIGRAMACK------KTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTI 379 (720)
Q Consensus 306 ~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 379 (720)
....+....|+++..|+|+.+..+-..+... .+...|+.-...+.. ++..+.+...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HH
Confidence 3346779999999999999999998888763 344455543322221 11122455668888999999 89
Q ss_pred hHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHHHHHHHHhccccccCCCCCcccCCce---EEEehH
Q 038398 380 RSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEH---VVKMHD 456 (720)
Q Consensus 380 k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~---~~~mHd 456 (720)
+..+...|++... ++.+.|...|- ......+....+.|....++-..+. ........ +-..||
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~--yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSET--YRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccc--cccccccchhhHHhhHH
Confidence 9999999999654 44555554441 1233455555565555544432210 00111111 225688
Q ss_pred HHHHHHHHHH
Q 038398 457 VIRDMVLWIA 466 (720)
Q Consensus 457 lv~~~a~~~~ 466 (720)
.+++.|-..-
T Consensus 377 ~vqqaaY~~i 386 (849)
T COG3899 377 RVQQAAYNLI 386 (849)
T ss_pred HHHHHHhccC
Confidence 8887765443
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=2.9e-10 Score=118.95 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=24.1
Q ss_pred CcccEEEccCCCCCc----cCCccccCCCCCCEEeccCCCCc-----ccchhhhcCCCCCEEeccC
Q 038398 540 PSLRVFNMSNNHLLW----KLPSGISTLVSLEHLDLSSTAIT-----HLPIELQKLVNLKCLNLEY 596 (720)
Q Consensus 540 ~~L~~L~L~~~~~~~----~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~ 596 (720)
++|+.|++++|.+.+ .++..+..+.+|++|++++|.++ .++..+..+++|++|++++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 444555555543331 12223334444555555544443 1222333334455555544
No 31
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=1.1e-09 Score=102.39 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=89.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCC----cCEEEEEEecCcCCHH---HHHHHHHHHhCCCCCccCCCChhHHHH
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNV----FDVVIWVVVSKDLQLE---KIQEKIGRRIGFFDESWKNGSLEDKTS 220 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 220 (720)
+++.|.|.+|+||||+++.++.... .... +..++|+......... .+...+..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5789999999999999999998873 2222 4567777766544332 34444444432211 11111
Q ss_pred HHHH-HhccCcEEEEEeccccccc---------ccccc-ccCCC-CCCCcEEEEEcCChhH---hhhhccCceeeccCCC
Q 038398 221 DILR-ILGKKKFLLLLDDIWERVD---------LTKVG-IPFPD-PENKSKIVFTTHFLEI---CGALKAHEFLKVECLG 285 (720)
Q Consensus 221 ~l~~-~l~~k~~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~iiiTtR~~~v---~~~~~~~~~~~l~~L~ 285 (720)
.+.. .-..++++||||++++... +..+. ..+.. ...+++++||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 1222 2256899999999976432 11111 11221 2458999999998766 2333444679999999
Q ss_pred hhhHHHHHHHHhc
Q 038398 286 PEDAWRLFRENLR 298 (720)
Q Consensus 286 ~~e~~~Lf~~~~~ 298 (720)
+++..+++.+++.
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.7e-10 Score=104.96 Aligned_cols=133 Identities=27% Similarity=0.359 Sum_probs=50.4
Q ss_pred CcccccccceeEEEecccccccCCCCC-CCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccc-cCCC
Q 038398 487 APEIQNWRNVRRMSLMKNKIENLSETP-TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGI-STLV 564 (720)
Q Consensus 487 ~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~ 564 (720)
++.+.++.+++.|+|.+|.|..+.... .+.+|+.|++++|.++.+.. +..++.|++|++++|++. .++..+ ..++
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 444555567888999999888877665 57888899999998887764 777888889999888544 554444 3578
Q ss_pred CCCEEeccCCCCcccc--hhhhcCCCCCEEeccCCcCCCCCc---hhhhhccccCceeeccccC
Q 038398 565 SLEHLDLSSTAITHLP--IELQKLVNLKCLNLEYMNNLNQFP---RLVISAFSKLQVLRMFDCG 623 (720)
Q Consensus 565 ~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp---~~~~~~l~~L~~L~~~~~~ 623 (720)
+|+.|++++|+|..+- ..+..+++|+.|++.+| .+..-+ ..++..+++|+.|+-....
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEcc
Confidence 8888998888887553 33667888888888884 333333 2356778888888776554
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=5.5e-10 Score=128.48 Aligned_cols=235 Identities=21% Similarity=0.208 Sum_probs=156.8
Q ss_pred EEEcCCCCccCcccccccceeEEEecccc--cccCCC--CCCCCcccEEEccCC-CCcCcchHHhccCCcccEEEccCCC
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNK--IENLSE--TPTCPHLLSLFLSDN-SLKMSTDDFFQSMPSLRVFNMSNNH 551 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~ 551 (720)
++.........+.-..+++++.|-+..|. +..++. +..++.|++|++++| .+..+|.. +++|-+||||+|+++
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t- 605 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT- 605 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-
Confidence 33333334444444555689999999886 666655 678999999999998 56667665 899999999999999
Q ss_pred CCccCCccccCCCCCCEEeccCCC-CcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcc---
Q 038398 552 LLWKLPSGISTLVSLEHLDLSSTA-ITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKI--- 627 (720)
Q Consensus 552 ~~~~lp~~i~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l--- 627 (720)
.+..+|..+++|..|.+|++..+. +..+|..+..|++|++|.+.... ........+.+.+|++|..+.+.....
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~~~~ 683 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSVLLL 683 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchhHhH
Confidence 566999999999999999999984 55566666669999999998732 122222355556666665554433221
Q ss_pred cchh---------cccc--cCCccccHHHhcCCCCCceeEEEecchhhHHH-Hhhhh--h-hhhhccccccccccCCCcc
Q 038398 628 ERLK---------INVL--FGGHQFLVEELMGMKHLMVLTITLKSWQALKE-LLISQ--E-LQRSTQSLFLRCFNDSKSL 692 (720)
Q Consensus 628 ~~l~---------~~~~--~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~-l~~~~--~-~~~~L~~L~l~~~~~l~~l 692 (720)
.++. ...+ ..........+..+.+|+.|.+..+....... +..+. . .++++..+.+.+|..+..+
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 1110 0001 01122345566778889999998777643211 11111 1 1346777777777766666
Q ss_pred ccccccccCCcceeeecCCCCCccc
Q 038398 693 DIFCLAGLRNLNKLYVAGCKHLEDS 717 (720)
Q Consensus 693 ~~~~l~~l~~L~~L~l~~c~~l~~i 717 (720)
. +..-.|+|+.|++..|+.++++
T Consensus 764 ~--~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 764 T--WLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred c--hhhccCcccEEEEecccccccC
Confidence 5 4455689999999999988865
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=2e-08 Score=101.00 Aligned_cols=175 Identities=22% Similarity=0.241 Sum_probs=108.2
Q ss_pred CCCCcCchHHH---HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHH
Q 038398 125 CEPTVGLESTF---DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGR 201 (720)
Q Consensus 125 ~~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 201 (720)
.+++||.+..+ .-|-+.+..+.+.-...|||+|+||||||+.+.... ...| ..++...+-.+=
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkd------ 88 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKD------ 88 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHH------
Confidence 35667777655 235555666778888899999999999999999876 3343 333332221111
Q ss_pred HhCCCCCccCCCChhHHHHHH-HHHhccCcEEEEEecccc--ccccccccccCCCCCCCcEEEE--EcCChhH---hhhh
Q 038398 202 RIGFFDESWKNGSLEDKTSDI-LRILGKKKFLLLLDDIWE--RVDLTKVGIPFPDPENKSKIVF--TTHFLEI---CGAL 273 (720)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iii--TtR~~~v---~~~~ 273 (720)
..+..+.- .....+++.+|++|+|.. ..+-+.+ +|.-..|.-|+| ||.|+.. ....
T Consensus 89 -------------lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 89 -------------LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred -------------HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 12222222 123347899999999974 4444444 344456777776 6666543 2223
Q ss_pred ccCceeeccCCChhhHHHHHHHHhccCccC---CCCCh-HHHHHHHHHHhCCcc-hHHHHH
Q 038398 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLD---NHPDI-PELARSVAQECAGLP-LALITI 329 (720)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~---~~~~~-~~~~~~i~~~c~GlP-Lai~~~ 329 (720)
+-..++.+++|+.+|-.+++.+.+...... ....+ ++....++..++|-- .|++.+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 445789999999999999999854322211 11222 456777888888843 344433
No 35
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.98 E-value=2.1e-09 Score=121.04 Aligned_cols=132 Identities=23% Similarity=0.239 Sum_probs=100.6
Q ss_pred HHHHHHHHhhhccccccEEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhcc
Q 038398 459 RDMVLWIACKIEKEKENFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQS 538 (720)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 538 (720)
|..|....+++.......+......+..+|..- ..+++.|++.+|.+..+|.. +++|++|++++|.++.+|..
T Consensus 188 r~~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---- 260 (788)
T PRK15387 188 RAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---- 260 (788)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----
Confidence 345555555555555667777777777766522 35899999999999988764 58999999999999988742
Q ss_pred CCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCch
Q 038398 539 MPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPR 605 (720)
Q Consensus 539 l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 605 (720)
.++|+.|++++|. +..+|.. +..|+.|++++|+++.+|.. +++|+.|++++ |.+..+|.
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~ 319 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA 319 (788)
T ss_pred ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCC
Confidence 4689999999995 4567753 35788999999999999863 57899999998 46777765
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=5.5e-11 Score=117.92 Aligned_cols=208 Identities=21% Similarity=0.221 Sum_probs=150.8
Q ss_pred cccccccceeEEEecccccccCCC--CCCCCcccEEEccC-CCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSD-NSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLV 564 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 564 (720)
..|..+++||+|+|+.|.|+.+.+ +.+++.|.+|.+.+ |+++.++...|.+|..|+-|.+.-|+..-.....+..|+
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 468899999999999999987754 46777777776666 899999999999999999999888866555567788888
Q ss_pred CCCEEeccCCCCcccch-hhhcCCCCCEEeccCCc---------------------------------------------
Q 038398 565 SLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMN--------------------------------------------- 598 (720)
Q Consensus 565 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~--------------------------------------------- 598 (720)
+|..|.+..|.+..++. ++..+..++++.+..+.
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh
Confidence 88888888888888876 57777777777654321
Q ss_pred ----------------CCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecch
Q 038398 599 ----------------NLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSW 662 (720)
Q Consensus 599 ----------------~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 662 (720)
.....|...+.+|++ |...++++|++..+.... +.....++.|.+..|.+
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~---L~~lnlsnN~i~~i~~~a-----------Fe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPN---LRKLNLSNNKITRIEDGA-----------FEGAAELQELYLTRNKL 310 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhccc---ceEeccCCCccchhhhhh-----------hcchhhhhhhhcCcchH
Confidence 011112222344444 444455668877666544 44556677788877777
Q ss_pred hhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 663 QALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 663 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
..+.. ..+..+..|+.|+|.+ |.++.+....|..+.+|..|+|-.||
T Consensus 311 ~~v~~--~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 311 EFVSS--GMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred HHHHH--HhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 65543 2344556889999998 66777776788888999999987766
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=1.2e-09 Score=100.75 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=58.0
Q ss_pred EEEcCCCCccCcccc-cccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc
Q 038398 477 LVHAGLGLTEAPEIQ-NWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK 555 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (720)
+...+.....+..+. .+.+++.|++++|.+..++.+..+++|++|++++|.++.+.+.....+++|+.|+|++|++...
T Consensus 24 L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 24 LNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred ccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 444555555555555 4678999999999999999999999999999999999998765446799999999999965321
Q ss_pred -CCccccCCCCCCEEeccCCCCcccchh----hhcCCCCCEEeccC
Q 038398 556 -LPSGISTLVSLEHLDLSSTAITHLPIE----LQKLVNLKCLNLEY 596 (720)
Q Consensus 556 -lp~~i~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~l~~ 596 (720)
--..+..+++|++|+|.+|.++..+.- +..+++|+.||-..
T Consensus 104 ~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 104 NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 124567899999999999999876543 78899999999754
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.94 E-value=9.9e-09 Score=100.81 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=99.0
Q ss_pred CCCCcCchHHH--HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 125 CEPTVGLESTF--DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 125 ~~~~vGr~~~~--~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
.++|+|-+... ..+.+.......+.+.++|++|+|||+|++++++... .....+.|+.+.... ....
T Consensus 15 fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~----- 83 (229)
T PRK06893 15 LDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP----- 83 (229)
T ss_pred ccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----
Confidence 36677544321 1122222223346789999999999999999999862 223355677653210 0000
Q ss_pred hCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc---ccccc-ccccCCC-CCCCcEEE-EEcCC---------h
Q 038398 203 IGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER---VDLTK-VGIPFPD-PENKSKIV-FTTHF---------L 267 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~ii-iTtR~---------~ 267 (720)
.+.+.+. +.-+|||||+|.. ..|+. +...+.. ...|..+| +|++. +
T Consensus 84 ------------------~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~ 144 (229)
T PRK06893 84 ------------------AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLP 144 (229)
T ss_pred ------------------HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccch
Confidence 1111122 2348999999863 33432 2111211 12355554 45543 3
Q ss_pred hHhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHH
Q 038398 268 EICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALI 327 (720)
Q Consensus 268 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 327 (720)
.+...+.....+++++++.++.++++.+.+....... -++...-|++.+.|-.-.+.
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHH
Confidence 4455555567899999999999999999887543222 26778888888887554443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=5.3e-11 Score=123.29 Aligned_cols=193 Identities=24% Similarity=0.325 Sum_probs=126.7
Q ss_pred cceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEecc
Q 038398 494 RNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (720)
......+++.|.+..+|.- ..|-.|..|.+..|.+..++.. +.++..|.+|||+.| -+..+|..++.|+ |+.|.++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEe
Confidence 3344567777777776653 4456677788888877777665 778888888888888 4457787777664 7888888
Q ss_pred CCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCC
Q 038398 573 STAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHL 652 (720)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L 652 (720)
+|+++.+|+.++.+..|.+||.+. +.+..+|.. ++.+.+|+.|.+. .|++..+ +.++..|+ |
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vr---Rn~l~~l------------p~El~~Lp-L 213 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVR---RNHLEDL------------PEELCSLP-L 213 (722)
T ss_pred cCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHh---hhhhhhC------------CHHHhCCc-e
Confidence 888888888888888888888887 455667764 5666666655544 4554333 33454433 6
Q ss_pred ceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccc--cccCCcceeeecCC
Q 038398 653 MVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCL--AGLRNLNKLYVAGC 711 (720)
Q Consensus 653 ~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l--~~l~~L~~L~l~~c 711 (720)
..|+++.|++..+ +..+..++.|+.|-|.+ |-+.+-|..-. +..--.++|++.-|
T Consensus 214 i~lDfScNkis~i---Pv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKISYL---PVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCceeec---chhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 6777776666544 45566667777777776 43555553321 12223456666655
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=7.1e-10 Score=115.99 Aligned_cols=211 Identities=24% Similarity=0.235 Sum_probs=141.1
Q ss_pred cccccceeEEEecccccccCC--------CCCCCCcccEEEccCCCCcCcchHHhccCCc---ccEEEccCCCCCc----
Q 038398 490 IQNWRNVRRMSLMKNKIENLS--------ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPS---LRVFNMSNNHLLW---- 554 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~L~~~~~~~---- 554 (720)
+...++++++++.++.+...+ .+..+++|+.|++++|.+....+..+..+.. |++|++++|+...
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 445567899999888765311 1255789999999999887555555555555 9999999996652
Q ss_pred cCCccccCC-CCCCEEeccCCCCc-----ccchhhhcCCCCCEEeccCCcCCCC-----CchhhhhccccCceeeccccC
Q 038398 555 KLPSGISTL-VSLEHLDLSSTAIT-----HLPIELQKLVNLKCLNLEYMNNLNQ-----FPRLVISAFSKLQVLRMFDCG 623 (720)
Q Consensus 555 ~lp~~i~~l-~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~-----lp~~~~~~l~~L~~L~~~~~~ 623 (720)
.++..+..+ ++|+.|++++|.++ .++..+..+++|++|++++|. +.. ++.. +..+++|++|++.+|.
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCc
Confidence 234456677 89999999999887 445567788899999999863 331 1211 3444578888887654
Q ss_pred CCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhh---hhhhccccccccccCCCcccc----cc
Q 038398 624 GSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQE---LQRSTQSLFLRCFNDSKSLDI----FC 696 (720)
Q Consensus 624 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~----~~ 696 (720)
... .. .......+..+++|+.|+++++.+........... ..+.|++|++++|. ++.... ..
T Consensus 205 i~~---~~-------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~ 273 (319)
T cd00116 205 LTD---EG-------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEV 273 (319)
T ss_pred cCh---HH-------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHH
Confidence 332 11 11234456778999999999987764322221111 13689999999864 331111 24
Q ss_pred ccccCCcceeeecCCCC
Q 038398 697 LAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 697 l~~l~~L~~L~l~~c~~ 713 (720)
+..+++|+.|++++|.-
T Consensus 274 ~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 274 LAEKESLLELDLRGNKF 290 (319)
T ss_pred HhcCCCccEEECCCCCC
Confidence 56678999999999874
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.89 E-value=2.5e-08 Score=107.14 Aligned_cols=177 Identities=17% Similarity=0.144 Sum_probs=106.8
Q ss_pred CCCCCcCchHHHHH---HHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 124 PCEPTVGLESTFDK---VWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 124 ~~~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
..+++||++..+.. +..++..+....+.++|++|+||||+|+.+++.. ...| +.++....-..-.+.+.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH
Confidence 34678999988766 8888877777788899999999999999999876 2232 22222111111111121
Q ss_pred HHhCCCCCccCCCChhHHHHHHHH-HhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE--EcCChhH---hhh
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILR-ILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF--TTHFLEI---CGA 272 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii--TtR~~~v---~~~ 272 (720)
. .... ...+++.+|++|+++.. ...+.+...+. .|..++| ||.+... ...
T Consensus 82 ~-------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 82 E-------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred H-------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 1 1111 11457889999999853 23333332222 2444444 3444321 111
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
......+.+.+++.++.+.++.+.+.........-..+....|++.|+|.|..+..+.
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2223678999999999999999876432101012235677889999999887654443
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.87 E-value=2.7e-07 Score=102.10 Aligned_cols=207 Identities=16% Similarity=0.099 Sum_probs=121.3
Q ss_pred CCCcCchHHHHHHHHHhcC----C-CceEEEEEcCCCChHHHHHHHHHhhhcCC--CCCcC--EEEEEEecCcCCHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----E-QVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNVFD--VVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~v~~~~~~~~~~ 196 (720)
+.+.|||+++++|...|.. . ...++.|+|++|+|||++++.|.+...+. ..... .+++|++..-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4568999999999888743 2 23577899999999999999998776211 11112 46778877777888888
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHHHhcc---CcEEEEEecccccc--ccccccccCC-CCCCCcEEEE--EcCChh
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILRILGK---KKFLLLLDDIWERV--DLTKVGIPFP-DPENKSKIVF--TTHFLE 268 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~--~~~~l~~~~~-~~~~gs~iii--TtR~~~ 268 (720)
..|..++....+. ......+....+...+.. ...+||||+++... .-+.+...+. ....+++|++ +|....
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 9999888433221 222333445555554422 24599999997432 1111111111 1123455444 333211
Q ss_pred H--------hhhhccCceeeccCCChhhHHHHHHHHhccCccCCC-CChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 038398 269 I--------CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNH-PDIPELARSVAQECAGLPLALITIGRAMA 334 (720)
Q Consensus 269 v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPLai~~~~~~l~ 334 (720)
. ...+ ....+..+|++.++-.+++..++.......+ ..++-+|+.+++..|-.-.||.++-.+..
T Consensus 914 LperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 914 LPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 1111 1234677999999999999998864321112 22333344444444446777777655543
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=98.82 E-value=1.7e-07 Score=102.83 Aligned_cols=245 Identities=18% Similarity=0.220 Sum_probs=135.0
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGR 201 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 201 (720)
++++|.++.++++..|+.. ...+.+.|+|++|+||||+|+.+++.. . |+ ++-++.+...+...+ ..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHHHH-HHHHH
Confidence 5689999999999998853 226789999999999999999999987 1 22 333444443333322 22222
Q ss_pred HhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc------cccccccCCCCCCCcEEEEEcCChh-Hh--hh
Q 038398 202 RIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD------LTKVGIPFPDPENKSKIVFTTHFLE-IC--GA 272 (720)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iiiTtR~~~-v~--~~ 272 (720)
...... .....++-+||||+++.... +..+...+. ..+..||+|+.+.. .. ..
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 221110 01113677999999976321 222322222 22345666664322 11 11
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHHhcCCChhHHHHHHHHHhc
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAMACKKTPQEWHYAIQVLRR 351 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (720)
......+++.+++.++....+...+....... -.+....|++.++|-.- |+..+-. +..+...-.-.. .+.+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~-~a~~~~~it~~~-v~~~~~ 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQA-IAEGYGKLTLED-VKTLGR 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH-HhcCCCCCcHHH-HHHhhc
Confidence 12345789999999999999888775443222 25678899999998654 4444444 333211111111 111111
Q ss_pred ccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcc
Q 038398 352 SASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQY 413 (720)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~ 413 (720)
.+....++.++..-+..=..+.+...+..+ .++. ..+-.|+.|.++...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhcccccc
Confidence 112236666666555421111233222221 1222 357789999998764
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.80 E-value=6.2e-08 Score=95.67 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=105.0
Q ss_pred CCCc--CchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 126 EPTV--GLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 126 ~~~v--Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
++|+ +.+..++.+.+++.......|.|+|++|+|||+||+.+++... ......+|++++.-.+ ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH----
Confidence 4555 2445777787776555667899999999999999999998862 2233456665533211 00
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc---cc-ccccccCCC-CCCCcEEEEEcCChh---------H
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV---DL-TKVGIPFPD-PENKSKIVFTTHFLE---------I 269 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iiiTtR~~~---------v 269 (720)
..+.+.+.+ .-+|||||++... .| ..+...+.. ...+..+|+||+... +
T Consensus 82 ----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 82 ----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH
Confidence 011111222 2389999997532 22 222222211 123457888887532 1
Q ss_pred hhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 038398 270 CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGR 331 (720)
Q Consensus 270 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 331 (720)
...+.....+++++++.++...++...+.... -+--.+..+.+++.++|.|..+..+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 22222245789999999999999887654322 112256678888889998887766543
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.76 E-value=8.1e-08 Score=94.69 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=108.6
Q ss_pred CCCcCchHHHH---HHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTVGLESTFD---KVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
.+.||.+..+- -|.+++.++.+..+.+||++|+||||||+.+.... +.+- ..||..|....-..=.++|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHH
Confidence 44577666543 24455566788889999999999999999999876 2221 5677777654333333333333
Q ss_pred hCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccc--ccccccccccCCCCCCCcEEEE--EcCChhH---hhhhcc
Q 038398 203 IGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWE--RVDLTKVGIPFPDPENKSKIVF--TTHFLEI---CGALKA 275 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iii--TtR~~~v---~~~~~~ 275 (720)
-.. ...+.++|.+|.+|+|.. ..+-+.+ +|.-.+|.-++| ||.++.. ......
T Consensus 213 aq~-----------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 213 AQN-----------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HHH-----------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhc
Confidence 211 113567899999999963 4444444 455567776666 6776654 233344
Q ss_pred CceeeccCCChhhHHHHHHHHhc---cCcc---C-CCC---ChHHHHHHHHHHhCCcc
Q 038398 276 HEFLKVECLGPEDAWRLFRENLR---RDVL---D-NHP---DIPELARSVAQECAGLP 323 (720)
Q Consensus 276 ~~~~~l~~L~~~e~~~Lf~~~~~---~~~~---~-~~~---~~~~~~~~i~~~c~GlP 323 (720)
-.++.|+.|+.++...++.+... +... . +++ ....+.+-++..|.|-.
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 57899999999999999887432 2111 1 111 12446667777888754
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=2.7e-07 Score=101.64 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=111.5
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
+++||.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+.... ...++ +..+..-...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC-e~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-ETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-ccCCC-------CCCCcccHHHHHHhcCCC
Confidence 5689999999999999987654 46679999999999999998887621 11110 001111111111111000
Q ss_pred CC---CCccCCCChhHHHHHHHHH----hccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCChh-Hh-hhh
Q 038398 205 FF---DESWKNGSLEDKTSDILRI----LGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFLE-IC-GAL 273 (720)
Q Consensus 205 ~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~~-v~-~~~ 273 (720)
.. .+.......++..+.+... ..++.-++|||+++... .+..+...+.......++|++|++.. +. ...
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 00 0000011111111111111 12355589999998643 34444333333344677777776543 32 112
Q ss_pred ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHHHHH
Q 038398 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIGRAM 333 (720)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~~l 333 (720)
+-...+++++++.++..+.+.+.+...... --.+..+.|++.++|. .-|+..+-..+
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223678999999999999998887643311 2356778899999885 45666654433
No 47
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.1e-06 Score=95.81 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=109.6
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCC-cCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNV-FDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
+++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+........ -.... +..+......+.|...-
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 5689999999999999987765 456899999999999999998876210000 00000 00011011111111000
Q ss_pred CCCC---CccCCCChhHHHHHHHHH----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-EcCChhHhhh-
Q 038398 204 GFFD---ESWKNGSLEDKTSDILRI----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF-TTHFLEICGA- 272 (720)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii-TtR~~~v~~~- 272 (720)
.... +.......++..+.+... ..++.-++|||+++.. .....+...+.....++++|+ ||....+..-
T Consensus 92 hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTI 171 (700)
T PRK12323 92 FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171 (700)
T ss_pred CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHH
Confidence 0000 000011122222211111 1345669999999754 334444444433334555555 4444444321
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
.+-...+.++.++.++..+.+.+.+...... .-.+..+.|++.++|.|. |+..+-..+
T Consensus 172 rSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALsLLdQai 230 (700)
T PRK12323 172 LSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALSLTDQAI 230 (700)
T ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2223678999999999999998877543211 124556889999999886 444444333
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=8.3e-07 Score=96.85 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=110.1
Q ss_pred CCCcCchHHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
+++||.+..++.|.+++..++ ...+.++|+.|+||||+|+.+++.... ....+ ...++.....+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC-~~~~~-------~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC-ETGVT-------STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CcCCC-------CCCCccCHHHHHHhcCCC
Confidence 568999999999999998765 457789999999999999999887621 00000 000111111111111000
Q ss_pred CCC---CccCCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh-hHh-hh
Q 038398 205 FFD---ESWKNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL-EIC-GA 272 (720)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~-~v~-~~ 272 (720)
... +.......++.. .+... ..++.-++|+|+++.. .....+...+.....+.++|++|.+. .+. ..
T Consensus 87 pDviEIDAAs~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000 000011111111 11111 1356668999999753 23333433333333456677766543 222 11
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
......+++.+++.++....+.+.+..... .--.+....|++.++|.+- |+..+-.++
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdALnLLDQaI 224 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDALSLTDQAI 224 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233468899999999999999888765431 1225567889999999664 444443433
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=2e-08 Score=108.21 Aligned_cols=87 Identities=31% Similarity=0.444 Sum_probs=41.2
Q ss_pred CcccEEEccCCCCcCcchHHhccCC-cccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEec
Q 038398 516 PHLLSLFLSDNSLKMSTDDFFQSMP-SLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNL 594 (720)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 594 (720)
+.+..|.+.+|.++.+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4445555555544444443 22232 4555555555 2334444445555555555555555555544444555555555
Q ss_pred cCCcCCCCCch
Q 038398 595 EYMNNLNQFPR 605 (720)
Q Consensus 595 ~~~~~l~~lp~ 605 (720)
++ +.+..+|.
T Consensus 194 s~-N~i~~l~~ 203 (394)
T COG4886 194 SG-NKISDLPP 203 (394)
T ss_pred cC-CccccCch
Confidence 54 34444444
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4e-09 Score=106.43 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=23.7
Q ss_pred cceeEEEecccccccCC---CCCCCCcccEEEccCCCCcCc--chHHhccCCcccEEEccCC
Q 038398 494 RNVRRMSLMKNKIENLS---ETPTCPHLLSLFLSDNSLKMS--TDDFFQSMPSLRVFNMSNN 550 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~ 550 (720)
++|+.++|.++.+...+ ....|++++.|+++.|-+... ...+...||+|+.|+|+.|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 34444444444443332 123445555555554422211 1122344455555555544
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.65 E-value=3.9e-07 Score=96.04 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCH--HHHHH--HHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQL--EKIQE--KIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~--~~~~~--~i~ 200 (720)
++++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+... ...+. ..++++++...+. ..+.. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcchh
Confidence 67899999999999999877666788999999999999999998762 22222 3345554331100 00000 000
Q ss_pred HHhCCCCCccCCCChhHHHHHHH-HHh-----ccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCChh-Hhh
Q 038398 201 RRIGFFDESWKNGSLEDKTSDIL-RIL-----GKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFLE-ICG 271 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~-~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~~-v~~ 271 (720)
..++.. .. ...........+. ... .+.+-+||+||++... ....+...+......+++|+||.+.. +..
T Consensus 93 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 93 HFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000 00 0001111222221 111 1334589999996532 12222222222234567777775432 221
Q ss_pred hh-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 272 AL-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 272 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
.. .....+.+.+++.++...++...+...... --.+....+++.++|.+-.+
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 11 223568889999999999998876543312 22567888899998865443
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=4.7e-09 Score=100.53 Aligned_cols=134 Identities=25% Similarity=0.425 Sum_probs=101.8
Q ss_pred ccccccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
.+..|+.|..+++++|.|+.+... .-.|.++.|++++|.+..+.. +..+++|+.||||+| ...++-..=..|.|.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 345677899999999999888765 345899999999998877765 788999999999999 4445544445788899
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCch-hhhhccccCceeeccccCCCcccch
Q 038398 568 HLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERL 630 (720)
Q Consensus 568 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~~~~~l~~l 630 (720)
+|+|++|.|..+ +++.+|.+|..||+++ |+++.+.. ..|++++.|++|.+. +|++..+
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~---~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLT---GNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhc---CCCcccc
Confidence 999999999988 4689999999999999 56666543 125666666666555 4554433
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=3.5e-07 Score=86.16 Aligned_cols=178 Identities=20% Similarity=0.194 Sum_probs=92.5
Q ss_pred CCCCCCCcCchHHHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHH
Q 038398 122 QRPCEPTVGLESTFDKVWRCLG-----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 196 (720)
|...++|||.++.++.+.-++. .+....+.+|||+|+||||||..+++.. ...|. +.+ .. .+.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~s--g~-~i~--- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITS--GP-AIE--- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEE--CC-C-----
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---ecc--ch-hhh---
Confidence 3445789999998888654442 2456789999999999999999999998 33442 221 11 000
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cc-------ccccccc-CCCCCC----------
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VD-------LTKVGIP-FPDPEN---------- 256 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~l~~~-~~~~~~---------- 256 (720)
...++...+. .++ ++-+|.+|++... .+ .+..... +...+.
T Consensus 88 -----------------k~~dl~~il~-~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 -----------------KAGDLAAILT-NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -----------------SCHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred -----------------hHHHHHHHHH-hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 0111111111 122 3446777887642 11 1111000 001111
Q ss_pred -CcEEEEEcCChhHhhhhcc--CceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 038398 257 -KSKIVFTTHFLEICGALKA--HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAM 333 (720)
Q Consensus 257 -gs~iiiTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 333 (720)
-+-|=.|||...+...... .-..+++..+.+|-.++..+.+..-.. +--++.+.+|++.|.|-|--..-+-+-+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 1234467886555333322 134589999999999999887754331 1236789999999999997655544433
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=4.8e-07 Score=101.69 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=109.1
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceE-EEEEcCCCChHHHHHHHHHhhhcCCCCC-------------------cCEEEEE
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGI-IGLYGMGGVGKTTLLTKINNKLLGAPNV-------------------FDVVIWV 184 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv 184 (720)
..++||.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++..... .. |.-++++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce-~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE-QGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc-cCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 3578999999999999998776654 5899999999999999999886211 11 1111111
Q ss_pred EecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH-HhccCcEEEEEeccccc--cccccccccCCCCCCCcEEE
Q 038398 185 VVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR-ILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIV 261 (720)
Q Consensus 185 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 261 (720)
.-.....+..+ +.+.. .+.. -..+++-++|||+++.. .....+...+.......++|
T Consensus 94 dAas~~kVDdI-ReLie-------------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 94 DAASRTKVDDT-RELLD-------------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred ccccccCHHHH-HHHHH-------------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 11100111111 11111 1111 12356779999999753 33444433343333455666
Q ss_pred EEcCC-hhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 038398 262 FTTHF-LEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITI 329 (720)
Q Consensus 262 iTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 329 (720)
++|.+ ..+... ......|++.+|+.++..+++.+.+.... ...-.+....|++.++|.|- |+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 334311 22236799999999999999988765432 12235677889999999775 44444
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2e-06 Score=89.71 Aligned_cols=202 Identities=18% Similarity=0.183 Sum_probs=130.1
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGR 201 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 201 (720)
+.+.+||.+++++...|.. ..+.-+.|+|.+|+|||+.++.+++.........+ +++|++-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4588999999999888743 34445999999999999999999998832222222 899999999999999999999
Q ss_pred HhCCCCCccCCCChhHHHHHHHHHhcc--CcEEEEEecccccccc--ccccccCCCCC-CCcEEE--EEcCChhHhhhhc
Q 038398 202 RIGFFDESWKNGSLEDKTSDILRILGK--KKFLLLLDDIWERVDL--TKVGIPFPDPE-NKSKIV--FTTHFLEICGALK 274 (720)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~--~~l~~~~~~~~-~gs~ii--iTtR~~~v~~~~~ 274 (720)
+++.... ......+....+.+.+.. +.+++|||+++....- +-+...+.... ..++|+ ..+.+......+.
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 9963221 334556667777777654 7899999999754222 11111111111 134433 3344333322221
Q ss_pred -------cCceeeccCCChhhHHHHHHHHhccCc--cCCCCChHHHHHHHHHHhCC-cchHHHHHH
Q 038398 275 -------AHEFLKVECLGPEDAWRLFRENLRRDV--LDNHPDIPELARSVAQECAG-LPLALITIG 330 (720)
Q Consensus 275 -------~~~~~~l~~L~~~e~~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 330 (720)
....+..+|-+.+|-.+.+..++.... ...+...-+++..++..-+| --.||..+-
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 123477899999999999998875321 13334445555555555554 455665553
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=2.6e-09 Score=111.03 Aligned_cols=176 Identities=28% Similarity=0.373 Sum_probs=121.9
Q ss_pred cccccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 490 IQNWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
+..|..|..+.+..|.+..+|.. .++..|.+|+++.|.+..+|.. +..|+ |++|-+++| .++.+|..++.+++|..
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecC-ccccCCcccccchhHHH
Confidence 34445566667777777666543 6777888888888888777776 55555 888888888 55688888888888888
Q ss_pred EeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcC
Q 038398 569 LDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMG 648 (720)
Q Consensus 569 L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 648 (720)
|+.+.|.+..+|+.++.+.+|+.|+++. +.+..+|.+ ...|+ |.-++++.|++..+|. .+.+
T Consensus 171 ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~Lp----Li~lDfScNkis~iPv------------~fr~ 232 (722)
T KOG0532|consen 171 LDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSLP----LIRLDFSCNKISYLPV------------DFRK 232 (722)
T ss_pred hhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCCc----eeeeecccCceeecch------------hhhh
Confidence 8888888888888888888888888888 566778875 34443 3444556677665543 5677
Q ss_pred CCCCceeEEEecchhhHHHHhhhhhhhhhccccccccc
Q 038398 649 MKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCF 686 (720)
Q Consensus 649 l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 686 (720)
++.|++|.+..|.+.+-+.-.-..+...-.+.|+...|
T Consensus 233 m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 88888888888877553321111122223455666665
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.62 E-value=2.5e-07 Score=84.38 Aligned_cols=123 Identities=23% Similarity=0.168 Sum_probs=73.8
Q ss_pred cCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC
Q 038398 129 VGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE 208 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 208 (720)
+|++..++.+...+.....+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47889999999998776667899999999999999999999872 222356676655433322211111000
Q ss_pred ccCCCChhHHHHHHHHHhccCcEEEEEeccccc-----cccccccccCCC---CCCCcEEEEEcCChh
Q 038398 209 SWKNGSLEDKTSDILRILGKKKFLLLLDDIWER-----VDLTKVGIPFPD---PENKSKIVFTTHFLE 268 (720)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~iiiTtR~~~ 268 (720)
............++.++|+||++.. ..+......+.. ...+..+|+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999853 112222112211 135778888887543
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=98.61 E-value=3.8e-07 Score=94.66 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=107.3
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
++++|.++.++.+..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-++.+...+...+ +.+...+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHH
Confidence 56799999999998888777667788999999999999999998862 22232 2222233332222222 22221111
Q ss_pred CCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCCh-hHhh-hhccCceee
Q 038398 205 FFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFL-EICG-ALKAHEFLK 280 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~-~~~~~~~~~ 280 (720)
.... . .-.++.-++|||+++... ....+...+......+++++++... .+.. .......++
T Consensus 90 ~~~~--~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 90 QKKV--T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred hccc--c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 0000 0 001346699999997532 2222222222223456777766432 2211 111235789
Q ss_pred ccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHH
Q 038398 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITI 329 (720)
Q Consensus 281 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 329 (720)
++++++++....+...+....... -.+....|++.++|-. -++..+
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999988876543222 2566788899998854 444444
No 59
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=1.1e-06 Score=91.92 Aligned_cols=183 Identities=13% Similarity=0.140 Sum_probs=106.8
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
..+++|++..++.+..++.....+.+.++|++|+||||+|+.+++... ...+. ..+-+..+.......+...+. .+
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~~~~i~-~~ 92 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVIRNKIK-EF 92 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHHHHHHH-HH
Confidence 356899999999999999776666789999999999999999998862 12222 112222222222221111111 11
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCCh-hHhh-hhccCcee
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFL-EICG-ALKAHEFL 279 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~-~~~~~~~~ 279 (720)
....+ .....+-++++|+++... ....+...+......+++|+++... .+.. .......+
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 10000 001235689999986432 2223322232233456777766432 2211 11223468
Q ss_pred eccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchH-HHHH
Q 038398 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLA-LITI 329 (720)
Q Consensus 280 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~ 329 (720)
++.++++++....+...+...... --.+....+++.++|.+-- +..+
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998887644311 2256788899999997654 3444
No 60
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=8.4e-08 Score=85.04 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL 226 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (720)
-+++.|.|+.|+||||++++++++. . ....++|++..+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 3689999999999999999999887 1 3446677766543221100 000 223333333
Q ss_pred ccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhhh------ccCceeeccCCChhhH
Q 038398 227 GKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGAL------KAHEFLKVECLGPEDA 289 (720)
Q Consensus 227 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~------~~~~~~~l~~L~~~e~ 289 (720)
..++.+++||++....+|......+.+.....+|++|+.+......- +....+++.||+..|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34778999999988878777655555555678999999877665321 1224678999998763
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=3.3e-08 Score=74.73 Aligned_cols=60 Identities=40% Similarity=0.534 Sum_probs=35.3
Q ss_pred CcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
|+|++|++++|.++.+++..|.++++|++|++++|.+...-|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345666666666666665556666666666666664443344555666666666666654
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.1e-06 Score=90.90 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=113.3
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhc---CCCCCcCEEEEEEe-cCcCCHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLL---GAPNVFDVVIWVVV-SKDLQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-~~~~~~~~~~~~i~ 200 (720)
.+++|.+..++.+..++..+.. ..+.++|+.|+||||+|+.++.... ....++|...|... +....+.++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 5679999999999999977654 5678999999999999999988642 12346666555442 223333332 2233
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccc--cccccccccccCCCCCCCcEEEEEcCChhHh-h-hhccC
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIW--ERVDLTKVGIPFPDPENKSKIVFTTHFLEIC-G-ALKAH 276 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~-~-~~~~~ 276 (720)
..+... -..+++-++|+|+++ +...+..+...+.....++.+|++|.+.+.. . ..+..
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 332211 012345566777764 3445666655565556688888888655432 1 12234
Q ss_pred ceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 277 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
..+++.++++++....+...+... -.+.+..++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHH
Confidence 688999999999988887654211 134467889999998875543
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.1e-06 Score=95.03 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=108.3
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCC------------------cCEEEEEE
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNV------------------FDVVIWVV 185 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv~ 185 (720)
.+++||.+..++.+...+..+.. +.+.++|++|+||||+|+.+++........ +..++.+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 36789999998888888877665 467899999999999999998876211000 00112222
Q ss_pred ecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEE
Q 038398 186 VSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFT 263 (720)
Q Consensus 186 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiT 263 (720)
.+...+...+ +.+...... .-..+++-++|+|+++.. .....+...+........+|++
T Consensus 93 aa~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2111111111 111111110 012245669999999743 2333343333332233444444
Q ss_pred cCC-hhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC-cchHHHHHHHHH
Q 038398 264 THF-LEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG-LPLALITIGRAM 333 (720)
Q Consensus 264 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l 333 (720)
|.+ ..+... ......+++.+++.++....+.+.+..... .--.+....|++.++| ++.++..+..+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 333222 223467899999999999998887754321 1225667788887865 677888776644
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=2.2e-08 Score=96.01 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=19.6
Q ss_pred ccccceeEEEecccccccCCCC-CCCCcccEEEccCC
Q 038398 491 QNWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDN 526 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~ 526 (720)
.-+++|..+.++.+.-+++..+ ..-|.|.++.+...
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecc
Confidence 3445666666666655554433 22355666666554
No 65
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.58 E-value=6.7e-06 Score=92.32 Aligned_cols=203 Identities=16% Similarity=0.060 Sum_probs=117.8
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc---CEEEEEEecCc---CCHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF---DVVIWVVVSKD---LQLEKIQEK 198 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~v~~~---~~~~~~~~~ 198 (720)
.+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 35789999999999888866666789999999999999999998765 222222 12334444321 122222111
Q ss_pred H---------------HHHhCCCC----------------CccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccc
Q 038398 199 I---------------GRRIGFFD----------------ESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLT 245 (720)
Q Consensus 199 i---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~ 245 (720)
+ +...+... +. ...-....+..+...+.++++.++-|+.|.. ..|.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDE-i~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDE-IGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEec-cccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1 11111110 00 0111223567778888888888887766543 3455
Q ss_pred cccccCCCCCCCcEEEE--EcCChhH-hhhh-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC
Q 038398 246 KVGIPFPDPENKSKIVF--TTHFLEI-CGAL-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG 321 (720)
Q Consensus 246 ~l~~~~~~~~~gs~iii--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 321 (720)
.+...+....+...+++ ||++... .... .....+.+.+++.+|.+.++.+.+...... --.+....|.+.+..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~---ls~eal~~L~~ys~~ 387 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH---LAAGVEELIARYTIE 387 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHCCCc
Confidence 55544444444444554 5554332 1111 122467889999999999999887543211 124555666666655
Q ss_pred cchHHHHHHHH
Q 038398 322 LPLALITIGRA 332 (720)
Q Consensus 322 lPLai~~~~~~ 332 (720)
-+-|+..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 56677666544
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.2e-06 Score=90.47 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=108.0
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.++++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++.... ..... ...+........+....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c-~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC-QNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCCCHHHHHHhcCC
Confidence 36789999999999999877654 56789999999999999999887621 00000 00000000111111110
Q ss_pred CCCCC---ccCCCChhHHHHHHHHHh-----ccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCCh-hHhhh
Q 038398 204 GFFDE---SWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFL-EICGA 272 (720)
Q Consensus 204 ~~~~~---~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~~ 272 (720)
..... .......++ ...+.+.+ .+++-++|+|+++... .+..+...+.......++|++|.+. .+...
T Consensus 87 ~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 87 CLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 000011111 22222222 2345699999997543 3444433333334456677666543 33222
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITI 329 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 329 (720)
.+....+++.+++.++..+.+...+..... .--++.+..|++.++|.|- |+..+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122367899999999999998887654321 1224567889999999775 44443
No 67
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=1.4e-06 Score=85.84 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=96.9
Q ss_pred CCCCcCchH-HHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLES-TFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.++||+... .+..+...........+.|+|++|+|||.|++++++... .....+.|++..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~--- 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR--- 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH---
Confidence 356665443 344443333333345799999999999999999988862 2223566765422 111111
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc---ccc-cccccCCC-CCCCcEEEEEcCChh---------H
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV---DLT-KVGIPFPD-PENKSKIVFTTHFLE---------I 269 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~iiiTtR~~~---------v 269 (720)
...+.+ .+.-+||+||+.... .+. .+...+.. ...|..||+|++... +
T Consensus 86 -----------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 -----------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred -----------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 011112 133489999996432 222 12111111 124567999997522 2
Q ss_pred hhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch
Q 038398 270 CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL 324 (720)
Q Consensus 270 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 324 (720)
...+.....+++++++.++-.+++.+++...... --++....|++.++|-.-
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~---l~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA---LDEAAIDWLLTHGERELA 199 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHH
Confidence 2233334688999999999999999877543322 225677888888876443
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-06 Score=95.08 Aligned_cols=199 Identities=18% Similarity=0.123 Sum_probs=112.6
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
++++|.+..++.|..++..+.. ..+.++|++|+||||+|+.+++... -.+.+...+|.|.+... +..-....+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 5679999999999999877665 4568999999999999999988772 11222223333221100 0000000000000
Q ss_pred CCCCccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcC-ChhHhhhh-cc
Q 038398 205 FFDESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTH-FLEICGAL-KA 275 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR-~~~v~~~~-~~ 275 (720)
.. .....+. +..+.+.+ .+++-++|+|+++.. ..+..+...+........+|++|. ...+.... ..
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 0111111 12222222 245668999999753 234444433433334455555554 33332222 23
Q ss_pred CceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHHh
Q 038398 276 HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAMA 334 (720)
Q Consensus 276 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l~ 334 (720)
...+++.+++.++..+.+.+.+...... --.+....|++.++|.+- ++..+-.++.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~---i~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGRE---AEPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4579999999999999999887654312 125678889999999774 5555544443
No 69
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=2e-06 Score=93.81 Aligned_cols=185 Identities=18% Similarity=0.185 Sum_probs=109.4
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC------------------CCcCEEEEEEe
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP------------------NVFDVVIWVVV 186 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 186 (720)
.++||.+..++.+..++..+.. ..+.++|+.|+||||+|+.+++...... +.|..++++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5689999999999999977654 4578999999999999999988652100 01222222222
Q ss_pred cCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH-HhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-
Q 038398 187 SKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR-ILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF- 262 (720)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii- 262 (720)
.....+.++ .+..+.+.. -..+++-++|+|+++.. .....+...+......+.+|+
T Consensus 96 as~~gvd~i--------------------r~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVEET--------------------KEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHHHH--------------------HHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111111111 111111111 12356679999999753 234444433433334555554
Q ss_pred EcCChhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHHHH
Q 038398 263 TTHFLEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGRAM 333 (720)
Q Consensus 263 TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 333 (720)
||....+... ......+++.+++.++....+.+.+..... ..-++....|++.++|.+ .|+..+-.++
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5443334322 233468999999999998888876654321 122556678999999955 5666655444
No 70
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7.7e-07 Score=94.42 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=110.3
Q ss_pred CCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.+++||.+..+..|..++..+... .+.++|+.|+||||+|+.+++... ...... ...+..... ...+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTS----CLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcH----HHHHHccC
Confidence 356899999999999999877654 588999999999999999988762 111100 000111111 11111111
Q ss_pred CCCCCcc---CCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc-CChhHhhh
Q 038398 204 GFFDESW---KNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT-HFLEICGA 272 (720)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~~ 272 (720)
....-.. .....++ ...+.+. ..++.-++|+|+++.. ..+..+...+........+|++| ....+...
T Consensus 89 ~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 89 SSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 1100000 0011111 1222221 2356679999999753 34555543343333345555444 43444222
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGR 331 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 331 (720)
..-...|.+.+++.++..+.+.+.+..... .--.+....|++.++|.+- |+..+-.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdAL~lLeq 225 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDMLSFMEQ 225 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHHHHHHHH
Confidence 222357999999999999998887654331 1225677889999999774 5555433
No 71
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=2.3e-07 Score=82.87 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCC--CCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGA--PNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
.+.+.|+|++|+|||++++.+.+..... ...-..++|+.+....+...+...++.+++..... ..+..+..+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4689999999999999999999876200 00034677999988889999999999999876532 3466777788888
Q ss_pred HhccCcE-EEEEeccccc-c--ccccccccCCCCCCCcEEEEEcCC
Q 038398 225 ILGKKKF-LLLLDDIWER-V--DLTKVGIPFPDPENKSKIVFTTHF 266 (720)
Q Consensus 225 ~l~~k~~-LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~iiiTtR~ 266 (720)
.+...+. +||+|+++.. . .++.+.... ...+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~--~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLL--NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHT--CSCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHH--hCCCCeEEEEECh
Confidence 8877655 9999999764 2 222232221 2556777777654
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.50 E-value=2.1e-06 Score=84.65 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=98.3
Q ss_pred CCCc-CchH-HHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 126 EPTV-GLES-TFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 126 ~~~v-Gr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
++|+ |-.. .+..+.++......+.+.|+|++|+|||+|++.+++... ..-..+.|+.+......
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~~----------- 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAWF----------- 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhhh-----------
Confidence 4554 6322 344444444344556899999999999999999998762 22235667765431100
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc---ccccc-ccccCCC-CCCC-cEEEEEcCChh---------
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER---VDLTK-VGIPFPD-PENK-SKIVFTTHFLE--------- 268 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~iiiTtR~~~--------- 268 (720)
.. .+.+.+.+ .-++++||+... ..|+. +...+.. ...| .++|+||+...
T Consensus 88 -----------~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 88 -----------VP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred -----------hH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 00 11111211 237899999642 22322 1111111 1123 47899987542
Q ss_pred HhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 269 ICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 269 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
+...+.....++++++++++-.+++.+++..... .--+++..-|++.+.|..-++
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~---~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF---ELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhhcCCHHHH
Confidence 2344455578999999999999999886654321 223677888888888754433
No 73
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=4.5e-06 Score=91.22 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=108.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCC------------------CCcCEEEEEE
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAP------------------NVFDVVIWVV 185 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~ 185 (720)
.+++||.+..++.+.+++..+... .+.++|+.|+||||+|+.+.+...... +.|.-++.+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 356899999999999999876654 578999999999999999988762110 1111233332
Q ss_pred ecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEE
Q 038398 186 VSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFT 263 (720)
Q Consensus 186 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiT 263 (720)
.+....+.++ ++++..+... -..++.-++|+|+++.. .....+...+......+++|++
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2222222222 1222221110 01245668999999753 2333333333333345666655
Q ss_pred cCC-hhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 264 THF-LEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 264 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
|.+ ..+... .+....+++++++.++....+...+...... --.+....|++.++|.+- |+..+-.++
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 543 333211 2223568899999999888877776543311 124556788899998764 444443433
No 74
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=2e-07 Score=91.69 Aligned_cols=91 Identities=20% Similarity=0.144 Sum_probs=62.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc--CCHHHHHHHHHHHhCCCCCccCCCChh------H
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD--LQLEKIQEKIGRRIGFFDESWKNGSLE------D 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~------~ 217 (720)
.-..++|+|++|+|||||++.+++.. . ..+|+.++|+.+.+. .++.++++.+...+-...- ...... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHHH
Confidence 44789999999999999999999987 3 348999999998777 7899999998333221110 111111 1
Q ss_pred HHHHHHHH-hccCcEEEEEecccc
Q 038398 218 KTSDILRI-LGKKKFLLLLDDIWE 240 (720)
Q Consensus 218 ~~~~l~~~-l~~k~~LlVlDdv~~ 240 (720)
..+....+ -.++++++++|++..
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHH
Confidence 11222222 247899999999864
No 75
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.48 E-value=3.8e-07 Score=86.94 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=32.5
Q ss_pred CCcCchHHHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLG---EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.||||+++++++...+. ....+.+.|+|++|+|||+|++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999992 2456899999999999999999999887
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=4.4e-06 Score=90.59 Aligned_cols=199 Identities=16% Similarity=0.127 Sum_probs=110.0
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCE-EEEEEecCcCCHHHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDV-VIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
..++||.+..+..+...+..+.. ..+.++|+.|+||||+|+.+++.... ...... --+..+. .......+...
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~----~C~~C~~i~~~ 94 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCE----QCTNCISFNNH 94 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCC----CChHHHHHhcC
Confidence 35679999999999888876653 57889999999999999999887621 111000 0000000 00001111110
Q ss_pred hCCCC---CccCCCChhHHHHHHHH----HhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-EcCChhHhhh
Q 038398 203 IGFFD---ESWKNGSLEDKTSDILR----ILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF-TTHFLEICGA 272 (720)
Q Consensus 203 l~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii-TtR~~~v~~~ 272 (720)
..... +.......++....+.. -+.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 00000 00011112222211111 12356778999999863 335555444433344556554 4454444332
Q ss_pred h-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 038398 273 L-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGR 331 (720)
Q Consensus 273 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 331 (720)
. .....+++.+++.++....+...+...... --.+....|++.++|.+- |+..+-.
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~al~~Ldk 232 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARDAVSILDQ 232 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 233578999999999999999888654311 124567789999998664 4444433
No 77
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=4.2e-07 Score=102.80 Aligned_cols=103 Identities=22% Similarity=0.322 Sum_probs=80.2
Q ss_pred cccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCc-ccchhhhcCCCCCEEecc
Q 038398 517 HLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAIT-HLPIELQKLVNLKCLNLE 595 (720)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~ 595 (720)
.+..|+|++|.+.+..+..+.++++|+.|+|++|.+.+.+|..++.+++|++|+|++|.++ .+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887766666888999999999999888888888999999999999999887 678889999999999998
Q ss_pred CCcCCCCCchhhhhc-cccCceeecc
Q 038398 596 YMNNLNQFPRLVISA-FSKLQVLRMF 620 (720)
Q Consensus 596 ~~~~l~~lp~~~~~~-l~~L~~L~~~ 620 (720)
+|.....+|.. ++. +.++..+.+.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~ 523 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFT 523 (623)
T ss_pred CCcccccCChH-HhhccccCceEEec
Confidence 86554567765 333 2344444443
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.2e-07 Score=102.10 Aligned_cols=176 Identities=25% Similarity=0.322 Sum_probs=117.7
Q ss_pred CcccccccceeEEEecccccccCCCCCCCC--cccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCC
Q 038398 487 APEIQNWRNVRRMSLMKNKIENLSETPTCP--HLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLV 564 (720)
Q Consensus 487 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 564 (720)
...+...+.+..|++.+|.+..++...... +|+.|++++|.+..++.. +..++.|+.|++++| .+..+|...+.++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~ 186 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLS 186 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhh
Confidence 334455567888999999988887765543 899999999988887533 788899999999999 4557777776888
Q ss_pred CCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHH
Q 038398 565 SLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVE 644 (720)
Q Consensus 565 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~ 644 (720)
.|+.|++++|+++.+|..+..+..|+.|.++++.. ..++.. +..+.++..|. +..|++..+ +.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~---l~~n~~~~~------------~~ 249 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLE---LSNNKLEDL------------PE 249 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccc---cCCceeeec------------cc
Confidence 99999999999999998777777899999988433 333332 55555555554 555554321 22
Q ss_pred HhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccc
Q 038398 645 ELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRC 685 (720)
Q Consensus 645 ~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 685 (720)
.++.++.++.|+++.+.+..+.. .....+++.|++++
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~ 286 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSG 286 (394)
T ss_pred hhccccccceecccccccccccc----ccccCccCEEeccC
Confidence 34444555555555555544433 22223555555554
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.47 E-value=1.4e-06 Score=98.63 Aligned_cols=177 Identities=20% Similarity=0.235 Sum_probs=101.9
Q ss_pred CCCCcCchHHHH---HHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHH
Q 038398 125 CEPTVGLESTFD---KVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGR 201 (720)
Q Consensus 125 ~~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~ 201 (720)
.+++||++..+. .+.+.+..+....+.++|++|+||||||+.+++.. ...|. .++.+. ....+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d------- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD------- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH-------
Confidence 356899998874 46666766777788999999999999999999876 33431 111110 00111
Q ss_pred HhCCCCCccCCCChhHHHHHHHHHh--ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEE--cCChh--Hhh-h
Q 038398 202 RIGFFDESWKNGSLEDKTSDILRIL--GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFT--THFLE--ICG-A 272 (720)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiT--tR~~~--v~~-~ 272 (720)
..+......+.+ .+++.+|||||++.. ...+.+...+ ..|+.++|+ |.+.. +.. .
T Consensus 93 -------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 93 -------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHh
Confidence 111111221212 246779999999743 3333333222 235555553 44432 111 1
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCc----cCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDV----LDNHPDIPELARSVAQECAGLP-LALITIGR 331 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 331 (720)
......+.+++|+.++...++.+.+.... .....--++....|++.+.|.. -++.++-.
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~ 220 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALEL 220 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 12235789999999999999988764210 0111223566788888888853 34444433
No 80
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=6.3e-06 Score=86.19 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=109.5
Q ss_pred CCCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCC-CcCE-EEEEEecCcCCHHHHHHHHH
Q 038398 124 PCEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPN-VFDV-VIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~-~~wv~v~~~~~~~~~~~~i~ 200 (720)
....+||.+..++.+.+.+..+... .+.++|+.|+||+|+|..+......... .... ..-......+......+.+.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 3457899999999999999877654 6889999999999999998877621110 0000 00000000000001111121
Q ss_pred HHhCCCC--------Cc----cCCCChhHHHHHHHHHhc-----cCcEEEEEeccccc--cccccccccCCCCCCCcEEE
Q 038398 201 RRIGFFD--------ES----WKNGSLEDKTSDILRILG-----KKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIV 261 (720)
Q Consensus 201 ~~l~~~~--------~~----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 261 (720)
..-.... +. ......++ ++.+.+.+. +.+.++|+|+++.. .....+...+.....++.+|
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1110000 00 00111222 333444443 45679999999753 22333333333333456666
Q ss_pred EEcCChh-Hhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 262 FTTHFLE-ICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 262 iTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
++|.+.. +... .+....+.+.+++.++..+++........ .+....+++.++|.|.....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666543 3221 22346789999999999999987642211 2223678999999998665443
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=5.7e-06 Score=89.01 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=108.9
Q ss_pred CCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCC------------------CCcCEEEEEE
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAP------------------NVFDVVIWVV 185 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~ 185 (720)
.+++||.+..++.+.+++..+... .+.++|+.|+||||+|+.++....... +.+.-++.++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 367899999999999988777654 788999999999999999987531000 0111223333
Q ss_pred ecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEE
Q 038398 186 VSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFT 263 (720)
Q Consensus 186 v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiT 263 (720)
.+...++.++. .+....... -+.+++-++|+|+++.. .....+...+......+++|++
T Consensus 92 aas~~~vddIR-~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 92 AASNTSVDDIK-VILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cccCCCHHHHH-HHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 32222222211 111111100 01245668999999753 2344443333333345666655
Q ss_pred c-CChhHhh-hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 038398 264 T-HFLEICG-ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITI 329 (720)
Q Consensus 264 t-R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 329 (720)
| ....+.. .......+++.+++.++....+.+.+..... .--++....|++.++|.+- ++..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 3344432 2233467899999999999999988765431 1225567789999988764 33433
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.43 E-value=8.9e-06 Score=86.35 Aligned_cols=182 Identities=14% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC-------------------CCcCEEEEE
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-------------------NVFDVVIWV 184 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv 184 (720)
..+++|.+..++.+..++..+.. ..+.++|++|+||||+|+.+........ .+++. +++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 35679999999999999977654 4678999999999999999987752110 12222 222
Q ss_pred EecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE
Q 038398 185 VVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF 262 (720)
Q Consensus 185 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii 262 (720)
.-+....... .+.+...+... -..+++-++|+|+++.. .....+...+......+.+|+
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 2211111111 11222221100 01234558899998643 223334333333334566666
Q ss_pred EcCChh-Hhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 263 TTHFLE-ICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 263 TtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
+|.+.. +... ......+++.++++++..+++...+...... --.+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK---IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCChHHHHHH
Confidence 665443 2221 2223578889999999999998877543311 12567888999999988655443
No 83
>PTZ00202 tuzin; Provisional
Probab=98.43 E-value=3.6e-06 Score=86.68 Aligned_cols=162 Identities=18% Similarity=0.161 Sum_probs=101.4
Q ss_pred CCCCCCCcCchHHHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 122 QRPCEPTVGLESTFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
|.....|+||+.++.++...|.+ +..+++.|.|++|+|||||++.+.... . + ..++++.. +..+++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHHH
Confidence 33447899999999999998854 235689999999999999999999765 1 1 13333332 67999999
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHh-----c-cCcEEEEEeccccccccccc---cccCCCCCCCcEEEEEcCChhH
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRIL-----G-KKKFLLLLDDIWERVDLTKV---GIPFPDPENKSKIVFTTHFLEI 269 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~iiiTtR~~~v 269 (720)
++.+|+.+. .....++...|.+.+ . +++.+||+-== +...+..+ ...+.....-|.|++----+.+
T Consensus 329 LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 329 VVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 999999742 222234444444433 2 56666666421 11111111 1112233445777765443333
Q ss_pred hhh---hccCceeeccCCChhhHHHHHHHHh
Q 038398 270 CGA---LKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 270 ~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
... ..--..|.++.++.++|..+-.+..
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 1223568899999999998877654
No 84
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=7.2e-07 Score=100.87 Aligned_cols=110 Identities=23% Similarity=0.351 Sum_probs=92.3
Q ss_pred ceeEEEeccccccc-CC-CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEecc
Q 038398 495 NVRRMSLMKNKIEN-LS-ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (720)
Q Consensus 495 ~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (720)
.++.|+|++|.+.. +| .+..+++|+.|++++|.+.+..+..+..+++|++|+|++|++.+.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999998864 33 24788999999999999987666669999999999999999999999999999999999999
Q ss_pred CCCCc-ccchhhhcC-CCCCEEeccCCcCCCCCc
Q 038398 573 STAIT-HLPIELQKL-VNLKCLNLEYMNNLNQFP 604 (720)
Q Consensus 573 ~~~i~-~lp~~i~~l-~~L~~L~l~~~~~l~~lp 604 (720)
+|.++ .+|..+..+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99887 889888764 577889998865444443
No 85
>PRK09087 hypothetical protein; Validated
Probab=98.41 E-value=4.1e-06 Score=81.75 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
..+.+.|+|++|+|||+|++.+++.. . ..|++.. .+...+...+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~~---------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANAA---------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHhh----------------------
Confidence 34679999999999999999988765 1 1243321 1111111111
Q ss_pred hccCcEEEEEecccccc-ccccccccCC-CCCCCcEEEEEcCC---------hhHhhhhccCceeeccCCChhhHHHHHH
Q 038398 226 LGKKKFLLLLDDIWERV-DLTKVGIPFP-DPENKSKIVFTTHF---------LEICGALKAHEFLKVECLGPEDAWRLFR 294 (720)
Q Consensus 226 l~~k~~LlVlDdv~~~~-~~~~l~~~~~-~~~~gs~iiiTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 294 (720)
.+ -+|++||+.... +-+.+...+. ....|..+|+|++. +.....+.....+++++++.++-.+++.
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 278889996421 1111211111 12346779998873 2233444556789999999999999999
Q ss_pred HHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 295 ENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
+++...... --+++..-|++.+.|..-++..
T Consensus 164 ~~~~~~~~~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLY---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCC---CCHHHHHHHHHHhhhhHHHHHH
Confidence 988654322 2267788888888886665543
No 86
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.1e-05 Score=88.68 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=111.4
Q ss_pred CCCcCchHHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
+++||.+..++.|.+++..+. ...+.++|+.|+||||+|+.+.+.... ....+. ..++.-...+.+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 567999999999999887765 467888999999999999999887621 110000 01111111111111100
Q ss_pred CCCCcc---CCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-hhHhhh-
Q 038398 205 FFDESW---KNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-LEICGA- 272 (720)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~~- 272 (720)
...-.. .....++ ++.+.+. ..+++-++|+|+++.. .....+...+........+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000000 0011111 1122222 2345679999999753 3334443333322234555555544 333322
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHHHHHh
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIGRAMA 334 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~~l~ 334 (720)
......+++++++.++....+...+...... --.+.+..|++.++|. -.|+..+..++.
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2223578999999999999998876543311 2256788899999995 578888776553
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.9e-06 Score=93.00 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=108.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
..++||.+..++.|...+..+... .+.++|+.|+||||+|+.+++..... ..+. ...+......+.|...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCC
Confidence 367899999999999999876654 46899999999999999998876211 0000 01111112222222110
Q ss_pred CCCC---CccCCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc-CChhHhh-
Q 038398 204 GFFD---ESWKNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT-HFLEICG- 271 (720)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~- 271 (720)
.... +.......++. +.+.+. ..+++-++|+|+++.. .....+...+.......++|++| ....+..
T Consensus 87 ~~D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 0000 00000111221 122222 2356679999999753 33444433333333445555544 4444432
Q ss_pred hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 038398 272 ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITI 329 (720)
Q Consensus 272 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 329 (720)
..+-...|++.+++.++....+.+.+..... ..-.+....|++.++|.+- |+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2222468999999999999999887643221 1224567789999999765 44444
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.39 E-value=4e-06 Score=82.66 Aligned_cols=171 Identities=12% Similarity=0.053 Sum_probs=96.6
Q ss_pred CCCc-CchHHH-HHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTV-GLESTF-DKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~v-Gr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
++|+ |..... ..+..+... .....+.|+|++|+|||+||+.+++... ... ..+.+++..... ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~-~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGG-RNARYLDAASPL------LA---- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEehHHhH------HH----
Confidence 5565 554433 444444332 3446789999999999999999998752 111 234455433211 00
Q ss_pred hCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc--cccccccCCC-CCCCc-EEEEEcCChhHhh-------
Q 038398 203 IGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD--LTKVGIPFPD-PENKS-KIVFTTHFLEICG------- 271 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs-~iiiTtR~~~v~~------- 271 (720)
+ ... ...-++|+||++.... ...+...+.. ...+. .+|+|++......
T Consensus 85 ~--------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 F--------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred H--------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 011 2234788999964322 1122222211 12233 4666666433211
Q ss_pred -hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 038398 272 -ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAM 333 (720)
Q Consensus 272 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 333 (720)
.+.....++++++++++-..++.+.+.... ..--++....+++.+.|.+..+..+...+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222246789999999887777776543322 12235678888889999998877666544
No 89
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.6e-06 Score=92.88 Aligned_cols=197 Identities=15% Similarity=0.119 Sum_probs=106.6
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.++||.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+.... ..... +. .+......+.+...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC-~~~~~---~~----pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC-ENAQH---GE----PCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cCCCC---CC----CCcccHHHHHHhccCc
Confidence 5679999999999999987664 46899999999999999999886511 10000 00 0000000000000000
Q ss_pred CC---CCccCCCChhHHHHHHHH----HhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCCh-hHhhh-h
Q 038398 205 FF---DESWKNGSLEDKTSDILR----ILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFL-EICGA-L 273 (720)
Q Consensus 205 ~~---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~~-~ 273 (720)
.. .+.......+...+.+.. -..+++-++|+|+++... ....+...+......+++|++|.+. .+... .
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 00 000001111111111110 012456789999997532 2223322232223455666666433 22211 1
Q ss_pred ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
+....+.+.+++.++....+.+.+...... --.+....|++.++|.+. ++..+-.++
T Consensus 168 SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdAlnLLDqai 225 (709)
T PRK08691 168 SRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDALSLLDQAI 225 (709)
T ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 222467889999999999998887654311 225667889999999774 445444443
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=6.4e-06 Score=89.98 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=108.3
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
..+++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++.... .. |... ..++.....+.+....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C-~~------~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC-LN------PKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-CC------CCCC-CCCcccHHHHHHHcCC
Confidence 35789999999999999976554 56889999999999999999887621 11 1100 0111111112221111
Q ss_pred CCCCCcc---CCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc-CChhHhh-
Q 038398 204 GFFDESW---KNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT-HFLEICG- 271 (720)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~- 271 (720)
....-.. .....++. +.+.+. ..+++-++|+|+++.. ..+..+...+......+.+|++| ....+..
T Consensus 87 h~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 1000000 00111111 111111 1123447999998753 33344433333233345555555 4333322
Q ss_pred hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHHH
Q 038398 272 ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGRA 332 (720)
Q Consensus 272 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~ 332 (720)
.......+++.++++++....+...+...... --.+.+..+++.++|.+ .|+..+-.+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~---Is~eal~~La~lS~GdlR~AlnlLekL 224 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIK---IEDNAIDKIADLADGSLRDGLSILDQL 224 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 22234578999999999999998877543211 12456788999999955 566665554
No 91
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=4.9e-06 Score=86.53 Aligned_cols=200 Identities=11% Similarity=0.077 Sum_probs=112.1
Q ss_pred CCCCCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC-CCcCEEEEEEecCcCCHHHHHHHH
Q 038398 122 QRPCEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-NVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
|+....++|.++..+.+...+..+.. ..+.|+|+.|+||||+|+.+........ ..+.... ....+......+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHH
Confidence 33446789999999999999987654 4688999999999999999988873210 0011110 01111111223333
Q ss_pred HHHhC-------CCCCc-----cCCCChhHHHHHHHHHhc-----cCcEEEEEeccccc--cccccccccCCCCCCCcE-
Q 038398 200 GRRIG-------FFDES-----WKNGSLEDKTSDILRILG-----KKKFLLLLDDIWER--VDLTKVGIPFPDPENKSK- 259 (720)
Q Consensus 200 ~~~l~-------~~~~~-----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~- 259 (720)
...-. .+.+. ......++ +..+.+++. +++-++|+|+++.. .....+...+.....+..
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 22211 00000 01112233 334444443 46679999999753 222333222222223444
Q ss_pred EEEEcCChhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 260 IVFTTHFLEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 260 iiiTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
|++|++...+... .+....+++.+++.++..+++...... .. .-.+....+++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455444333211 122358999999999999999874321 11 224557889999999998665443
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.38 E-value=2.2e-05 Score=75.73 Aligned_cols=174 Identities=21% Similarity=0.243 Sum_probs=99.9
Q ss_pred CCCCCcCchHHHHHHHHHhc-----CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 124 PCEPTVGLESTFDKVWRCLG-----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
...+|||.++.++++.=++. ++..-.|.++|++|.||||||..+++.. .+ .+. + .+.+-+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~--tsGp~le----- 89 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----I--TSGPALE----- 89 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----e--ccccccc-----
Confidence 34678999999988866653 2457789999999999999999999988 22 111 1 1111000
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc---------cccccccc-CCCCCCCcE---------
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV---------DLTKVGIP-FPDPENKSK--------- 259 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~l~~~-~~~~~~gs~--------- 259 (720)
...+++. +...|+... ++.+|++.... ..+.+... .-..++++|
T Consensus 90 ---------------K~gDlaa-iLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 ---------------KPGDLAA-ILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ---------------ChhhHHH-HHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 0111111 111122222 45557765321 01111000 011223333
Q ss_pred --EEEEcCChhHhhhhc--cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 038398 260 --IVFTTHFLEICGALK--AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGR 331 (720)
Q Consensus 260 --iiiTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 331 (720)
|=.|||.-.+..... -.-+.+++..+.+|-.+...+.+..-.... -++-+.+|+++..|-|--..-+-+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHH
Confidence 335888654433221 224678999999999999998875433222 256789999999999975554443
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7.2e-06 Score=90.77 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=107.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC-CCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-NVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
.+++||.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+...... ........ ..++.....+.|...
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 36789999999999999987665 5678999999999999999977652100 00000000 011111112222110
Q ss_pred hCCCCCcc---CCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc-CChhHh-
Q 038398 203 IGFFDESW---KNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT-HFLEIC- 270 (720)
Q Consensus 203 l~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~v~- 270 (720)
-....-.. .....++.. .+.+.. .++.-++|||+++.. ..+..+...+.......++|++| ....+.
T Consensus 91 ~h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000000 011111211 111211 234558999999853 33444433333333455565554 433332
Q ss_pred hhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 038398 271 GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITI 329 (720)
Q Consensus 271 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 329 (720)
........+++++++.++..+.+.+.+...... .-.+....|++.++|.+- ++..+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~al~lL 226 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDALSLT 226 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222334689999999999999998877544311 124567888999998664 44433
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.6e-06 Score=88.47 Aligned_cols=202 Identities=12% Similarity=0.108 Sum_probs=110.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE-ecCcCCHHHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV-VSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~ 202 (720)
.++++|.+..++.+.+++..+.++ .+.++|+.|+||||+|+.+++.... ....+...|.. +...++.-...+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 367899999999999999876654 5889999999999999999887621 11111111110 00111111111111111
Q ss_pred hCCCCCcc---CCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc-CChhHhh
Q 038398 203 IGFFDESW---KNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT-HFLEICG 271 (720)
Q Consensus 203 l~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~ 271 (720)
.......+ .....++.. .+.+.+ .+.+-++|+|+++.. ..+..+...+......+.+|++| +...+..
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 10000000 001112222 222333 245568899998753 34444444443334456665555 4333432
Q ss_pred h-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 038398 272 A-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGR 331 (720)
Q Consensus 272 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 331 (720)
. ......+++.++++++....+...+.... ..--.+.+..|++.++|.+- ++..+-.
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~~~L~k 231 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQSILDQ 231 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 12235788999999999988888764322 11225678899999999764 4444443
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.36 E-value=2.2e-06 Score=90.81 Aligned_cols=170 Identities=21% Similarity=0.279 Sum_probs=98.4
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|+++.+++|.+.+.. ...+.|.++|++|+|||++|+++++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4568999999999887631 124568999999999999999999987 3333 22211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc----------------ccccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV----------------DLTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~ 253 (720)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 1111222222222 2467899999987531 0111111111 1
Q ss_pred CCCCcEEEEEcCChhHh-----hhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEIC-----GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+.+||.||...... ........+.++..+.++..++|..++.......... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 12456788888754321 1112245789999999999999998875543222222 456777787754
No 96
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=3e-08 Score=105.95 Aligned_cols=186 Identities=23% Similarity=0.274 Sum_probs=112.2
Q ss_pred cCCCCccCcccccccceeEEEecccccccCCCCCCC-CcccEEEccCCCCcCcchH---H---hc---cCCcccEEEccC
Q 038398 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTC-PHLLSLFLSDNSLKMSTDD---F---FQ---SMPSLRVFNMSN 549 (720)
Q Consensus 480 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~---~---~~---~l~~L~~L~L~~ 549 (720)
++.+..++-++..++.||+|.+.++.+.....+..+ ..|+.|...+. ++.+..- - +. ....|.+.+.++
T Consensus 95 pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsy 173 (1096)
T KOG1859|consen 95 PARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSY 173 (1096)
T ss_pred CCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcch
Confidence 333444455778889999999999988654333222 13444433321 1111000 0 00 123567777777
Q ss_pred CCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccc
Q 038398 550 NHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIER 629 (720)
Q Consensus 550 ~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~ 629 (720)
|.+ ..+-.++.-+++|+.|||++|+++... .+..|++|+||||++ |.+..+|.-....+. |+.|.+. +|.++
T Consensus 174 N~L-~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lr---nN~l~- 245 (1096)
T KOG1859|consen 174 NRL-VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLR---NNALT- 245 (1096)
T ss_pred hhH-HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeec---ccHHH-
Confidence 743 355566777788888888888887775 577788888888887 567777763333333 4444443 34332
Q ss_pred hhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccccc
Q 038398 630 LKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 630 l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
.+.++.++.+|+.|+++.|-+....++...... ..|+.|+|.+++
T Consensus 246 ------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 ------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNP 290 (1096)
T ss_pred ------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCc
Confidence 244567777788888887777666665544433 377778887754
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.4e-05 Score=84.30 Aligned_cols=186 Identities=9% Similarity=0.017 Sum_probs=102.0
Q ss_pred CCCcCchHHHHHHHHHhcCCC----------ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQ----------VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
++++|.+..++.+.+++..+. ...+.++|++|+||||+|+.+.......... + ..++.-..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----C----CCCCCCHH
Confidence 567999999999999997643 4568899999999999999998765110000 0 00000011
Q ss_pred HHHHHHHhCCC----CCccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc
Q 038398 196 QEKIGRRIGFF----DESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT 264 (720)
Q Consensus 196 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt 264 (720)
-+.+...-... .+.......++ ++.+.+.+ .+++-++|+|+++.. .....+...+.....+..+|++|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 11111000000 00000111111 11222222 234558888999753 22233333333333456666666
Q ss_pred CCh-hHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 265 HFL-EICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 265 R~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
.+. .+... .+-...+.+.+++.++..+.+....+ . ..+.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 553 33322 22336889999999999988875421 1 1455788999999998755433
No 98
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.7e-07 Score=68.40 Aligned_cols=58 Identities=38% Similarity=0.557 Sum_probs=47.5
Q ss_pred CcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCC
Q 038398 540 PSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYM 597 (720)
Q Consensus 540 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~ 597 (720)
++|++|++++|++...-+..|.++++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 578899999995554444678889999999999999998865 5889999999999885
No 99
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.33 E-value=1.5e-06 Score=89.03 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC--CHHHHHHHHHHHhCCCCCccCCC
Q 038398 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL--QLEKIQEKIGRRIGFFDESWKNG 213 (720)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 213 (720)
++++++.. +.-...+|+|++|+||||||+.+++.. . ..+|+.++||.+.+.. ++.++++.+...+-... +...
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 34454433 334678999999999999999999998 3 3489999999999887 77888888863221111 1111
Q ss_pred ChhH------HHHHHHHH-hccCcEEEEEecccc
Q 038398 214 SLED------KTSDILRI-LGKKKFLLLLDDIWE 240 (720)
Q Consensus 214 ~~~~------~~~~l~~~-l~~k~~LlVlDdv~~ 240 (720)
.... ..+....+ -.+++++|++|++..
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 11111111 257999999999854
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.5e-05 Score=84.74 Aligned_cols=185 Identities=14% Similarity=0.158 Sum_probs=105.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCC-----CCCcCEE-EEEEecCcCCHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGA-----PNVFDVV-IWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~v~~~~~~~~~~~~ 198 (720)
.+++|.+..++.+..++..+.. +.+.++|++|+||||+|+.+.+..... ...|... +-+......+...+ +.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 5689999999999999977654 578899999999999999998775210 1112211 11111111111111 11
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEc-CChhHhh-hhc
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTT-HFLEICG-ALK 274 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~-~~~ 274 (720)
+...+... -..+++-++++|+++... .+..+...+......+.+|++| ....+.. ...
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 12211100 012345589999986432 2333322232223345555555 3333321 122
Q ss_pred cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHH
Q 038398 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRA 332 (720)
Q Consensus 275 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 332 (720)
....++++++++++....+...+...... --.+.+..+++.++|.+- ++..+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~---i~~~al~~l~~~~~gdlr~~~~~lekl 213 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIK---FEDDALHIIAQKADGALRDALSIFDRV 213 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33578999999999999998877543311 125678888889998554 44444443
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=98.30 E-value=1.2e-05 Score=79.33 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=87.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
..+.|+|+.|+|||.|++.+++... ..-..++|++... +... ...+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhhh
Confidence 6789999999999999999998762 1223567776432 1110 012223333
Q ss_pred cCcEEEEEeccccc---ccccc-ccccCC-CCCCCcEEEEEcCChhH---------hhhhccCceeeccCCChhhHHHHH
Q 038398 228 KKKFLLLLDDIWER---VDLTK-VGIPFP-DPENKSKIVFTTHFLEI---------CGALKAHEFLKVECLGPEDAWRLF 293 (720)
Q Consensus 228 ~k~~LlVlDdv~~~---~~~~~-l~~~~~-~~~~gs~iiiTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~Lf 293 (720)
+-. +||+||+... ..|.. +...+. ....|..+|+|++...- ...+.....+++++++.++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6888999632 23322 222221 12346788888874322 222233467899999999999999
Q ss_pred HHHhccCccCCCCChHHHHHHHHHHhCCcchHHH
Q 038398 294 RENLRRDVLDNHPDIPELARSVAQECAGLPLALI 327 (720)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 327 (720)
..++....... -+++..-|++.+.|-.-.+.
T Consensus 176 ~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 176 QLRASRRGLHL---TDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 86664432111 25777888888877644443
No 102
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=2.3e-05 Score=74.65 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=90.2
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC-------------------CCcCEEEEEEec-CcCCHHHH
Q 038398 137 KVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP-------------------NVFDVVIWVVVS-KDLQLEKI 195 (720)
Q Consensus 137 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v~-~~~~~~~~ 195 (720)
.+.+.+..+.. ..+.++|+.|+||||+|+.+........ .+.|. .++... .......+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45555655555 6788999999999999999988762110 11121 122111 11111111
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh-hHhhh
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL-EICGA 272 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~~ 272 (720)
+++...+... -..+.+-++|+||++.. .....+...+......+.+|++|++. .+...
T Consensus 82 -~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 82 -RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred -HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHH
Confidence 1122221110 01245668999998753 22334433333333456666666543 22221
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL 324 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 324 (720)
......+++.+++.++..+.+.+. + . -++.+..|++.++|.|.
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~-g--i------~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ-G--I------SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc-C--C------CHHHHHHHHHHcCCCcc
Confidence 122358999999999999888776 1 1 14668899999999885
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.5e-05 Score=86.23 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=110.0
Q ss_pred CCCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.+++||.+..++.|..++..+.+. .+.++|+.|+||||+|+.++...... ...+ + ..++.-...+.+...-
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~---~----~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPT---A----TPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCC---C----CcccccHHHHHhhccc
Confidence 367899999999999999877655 46899999999999999998876211 0000 0 0001001111111000
Q ss_pred CCCC-----CccCCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-EcCChhHh
Q 038398 204 GFFD-----ESWKNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF-TTHFLEIC 270 (720)
Q Consensus 204 ~~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii-TtR~~~v~ 270 (720)
+... +.......++. +.+.+. ..+++-++|+|+++.. .....+...+........+|+ ||....+.
T Consensus 84 ~~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000 00000111111 112211 1245568899998743 334444333333334555554 54444443
Q ss_pred hh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHh
Q 038398 271 GA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGRAMA 334 (720)
Q Consensus 271 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l~ 334 (720)
.. .+....+++.+++.++..+.+...+...... --.+....|++.++|.+ .++..+-.++.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 22 2334689999999999998888876543311 12456778899999966 46666655544
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.6e-05 Score=87.68 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=106.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCC------------------CCcCEEEEEEe
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAP------------------NVFDVVIWVVV 186 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~v 186 (720)
.++||.+..++.+..++..+... .+.++|+.|+||||+|+.+.+...... +.|..++++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 56899999999999999876654 568999999999999999987762100 01111222221
Q ss_pred cCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEc
Q 038398 187 SKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTT 264 (720)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTt 264 (720)
+....+..+ ++++...... -..+++-++|+|+++... ....+...+......+.+|++|
T Consensus 96 ~~~~~vd~i-r~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCHHHH-HHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 111111111 1111111000 012456699999997542 2333333333333455555555
Q ss_pred CC-hhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 265 HF-LEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 265 R~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
.+ ..+... ......+++++++.++..+.+.+.+..... ..-.+....|++.++|.+- |+..+-.++
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43 333211 122357899999999999888887654321 1224566889999999764 555554443
No 105
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.3e-07 Score=90.97 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=36.3
Q ss_pred ceeEEEecccccccCC---CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC--CccccCCCCCCEE
Q 038398 495 NVRRMSLMKNKIENLS---ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL--PSGISTLVSLEHL 569 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l--p~~i~~l~~L~~L 569 (720)
.+++|+|++..++.-. -+..|.+|+.|.+.++.+..-....+.+-.+|+.|+|++|+.+.+. .--+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666665553210 0134555555555555544433333444455555555555433221 1122344444444
Q ss_pred eccCC
Q 038398 570 DLSST 574 (720)
Q Consensus 570 ~L~~~ 574 (720)
+|+.|
T Consensus 266 NlsWc 270 (419)
T KOG2120|consen 266 NLSWC 270 (419)
T ss_pred CchHh
Confidence 44444
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2e-05 Score=87.44 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=108.3
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC--EEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD--VVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
.++||.+..++.+.+++..++. ..+.++|+.|+||||+|+.+.+..... .... ...+- .++...-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~-~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE-GPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC-CccccCCCccc----cCcccHHHHHHhcC
Confidence 5689999999999999987664 468899999999999999998876211 0000 00000 01111111222211
Q ss_pred hCCCCCc---cCCCChhHHHHHHHHHh-----ccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEc-CChhHhh
Q 038398 203 IGFFDES---WKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTT-HFLEICG 271 (720)
Q Consensus 203 l~~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~ 271 (720)
.....-. ......++. +.+.+.+ .+++-++|+|+++... ....+...+......+++|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1110000 011112221 1222222 2345589999986542 2334433333333456666554 4333322
Q ss_pred h-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 272 A-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 272 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
. ......+++.+++.++....+.+.+...... --.+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~---i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE---VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2 1233578999999999999998887543311 1246778899999998764433
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=2e-05 Score=90.48 Aligned_cols=196 Identities=12% Similarity=0.089 Sum_probs=108.2
Q ss_pred CCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.++||.+..++.|..++..+.+. .+.++|+.|+||||+|+.+.+...... .... ..++.-...+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVE-GPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCccc-CCCC-------CCCcccHHHHHHHcCCC
Confidence 56899999999999999876654 578999999999999999988772111 1000 00000000111110000
Q ss_pred CC-----CCccCCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc-CChhHhh
Q 038398 205 FF-----DESWKNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT-HFLEICG 271 (720)
Q Consensus 205 ~~-----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~ 271 (720)
.. .+.......++.. .+.+. ..++.-++|||+++.. .....|...+......+.+|++| ....+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 0000001111111 12211 2345568899999753 33334433343333455555555 4444432
Q ss_pred h-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHHHH
Q 038398 272 A-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGRAM 333 (720)
Q Consensus 272 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 333 (720)
. ......|++..++.++..+++.+.+...... .-.+....|++.++|.+ .++..+-.++
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 2334688999999999998888776443211 12455678999999977 3444444444
No 108
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.4e-05 Score=85.81 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=109.2
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE-ecCcCCHHHHHHHHHHHh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV-VSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~i~~~l 203 (720)
.++||.+..++.+.+++..+.+ ..+.++|+.|+||||+|+.+.+.... ....+.-.|.. +...++.-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c-~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC-CCcCCccccccccCCCCccCHHHHHHhccC
Confidence 5789999999999999977665 45889999999999999999887621 11111001110 001111111111111111
Q ss_pred CCCCCcc---CCCChhHHHHHHHHHh-----ccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEc-CChhHhh-
Q 038398 204 GFFDESW---KNGSLEDKTSDILRIL-----GKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTT-HFLEICG- 271 (720)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTt-R~~~v~~- 271 (720)
......+ .....++... +.+.+ .+.+-++|+|+++... ....+...+......+.+|++| +...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000000 0111222222 22222 3445578999987542 2334433333333345555444 4344432
Q ss_pred hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 038398 272 ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGR 331 (720)
Q Consensus 272 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 331 (720)
.......+++.+++.++....+.+.+...... --.+.+..|++.++|.. .|+..+-.
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 23345689999999999988888776533211 12567888999999944 45555443
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.21 E-value=1.2e-05 Score=78.40 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=118.0
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.+++|.+..++-+.+.+.....+....+||+|.|||+-|..++..... .+.|. .++=.++|...++.-+-.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhhhh-----
Confidence 567999999999999998777889999999999999999999887622 34454 34444555443332111111
Q ss_pred CCCCccCCCChhHHHHHHHHHh--ccCc-EEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChhH-hhhh-ccCc
Q 038398 205 FFDESWKNGSLEDKTSDILRIL--GKKK-FLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLEI-CGAL-KAHE 277 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v-~~~~-~~~~ 277 (720)
.+............ .-++ -++|||+++.. +.|..+...+......++.|+.+..-.. .... .--.
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 00010000000000 0123 38899999864 5677776555555555665555543322 1111 1124
Q ss_pred eeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC-cchHHHHHHHHH
Q 038398 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG-LPLALITIGRAM 333 (720)
Q Consensus 278 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l 333 (720)
.|+.++|..++...-+...+....... -.+..+.|++.++| +--|+.++-++-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRAITTLQSLS 235 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 588999999999998888887654332 25678889999988 566666665543
No 110
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.1e-07 Score=94.27 Aligned_cols=185 Identities=21% Similarity=0.208 Sum_probs=112.6
Q ss_pred cccccceeEEEecccccccCCCC----CCCCcccEEEccCCCCcCcchH-HhccCCcccEEEccCCCCCcc-CCccccCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLSET----PTCPHLLSLFLSDNSLKMSTDD-FFQSMPSLRVFNMSNNHLLWK-LPSGISTL 563 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l 563 (720)
...|++++.|+|+.|-+..+... ..+|+|+.|+++.|.+...... .-..+++|+.|.|+.|.+.+. +-...-.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 45677899999998877654332 6788999999999865433221 123567889999999866543 12223467
Q ss_pred CCCCEEeccCCC-CcccchhhhcCCCCCEEeccCCcCCCCCch-hhhhccccCceeeccccCCCcccchhcccccCCccc
Q 038398 564 VSLEHLDLSSTA-ITHLPIELQKLVNLKCLNLEYMNNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQF 641 (720)
Q Consensus 564 ~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~ 641 (720)
|+|+.|+|.+|. +..--.+...++.|+.|||++|+ +...+. ...+.++.|..|++.. +.+.++..... .
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~---tgi~si~~~d~-----~ 292 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSS---TGIASIAEPDV-----E 292 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccc---cCcchhcCCCc-----c
Confidence 888999998883 33222234557888999998854 444443 1245566655555554 44444433221 1
Q ss_pred cHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccc
Q 038398 642 LVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLR 684 (720)
Q Consensus 642 ~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~ 684 (720)
........++|+.|.+..|.+..++.+.... ...+|+.|.+.
T Consensus 293 s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~ 334 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRIT 334 (505)
T ss_pred chhhhcccccceeeecccCccccccccchhh-ccchhhhhhcc
Confidence 2223445678888888887775555443322 23466666654
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=2.5e-07 Score=99.88 Aligned_cols=104 Identities=27% Similarity=0.393 Sum_probs=86.3
Q ss_pred cccccceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 490 IQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
+..+.++..|++.+|.+..+.. ...+++|++|++++|.++.+.+ +..++.|+.|++++|.+ ..++ .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i-~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLI-SDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcc-hhcc-CCccchhhhc
Confidence 5566789999999999998888 7889999999999998888876 67788899999999944 3443 5666899999
Q ss_pred EeccCCCCcccchh-hhcCCCCCEEeccCC
Q 038398 569 LDLSSTAITHLPIE-LQKLVNLKCLNLEYM 597 (720)
Q Consensus 569 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~ 597 (720)
+++++|.++.++.. ...+.+|+.+++.++
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 99999999988654 578899999999883
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.18 E-value=2.4e-05 Score=91.01 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=100.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCC--CC-CcCEEE-EEEecCcCCHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA--PN-VFDVVI-WVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~-wv~v~~~~~~~~~~~~i~ 200 (720)
.+++|||++++.+++..|......-+.++|++|+||||+|+.++++.... .. -.+..+ .+.++.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----------
Confidence 46789999999999999977666677799999999999999999886211 10 112222 2322210
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEecccccc-------ccc--cccccCCCCCCC-cEEEEEcCChh
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERV-------DLT--KVGIPFPDPENK-SKIVFTTHFLE 268 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~--~l~~~~~~~~~g-s~iiiTtR~~~ 268 (720)
.... . .....+.....+.+.+. +++.+|++|++.... ..+ .+..+ .-..| -++|-||..++
T Consensus 255 ---~ag~-~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 255 ---QAGA-S-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAE 327 (852)
T ss_pred ---hccc-c-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHH
Confidence 0000 0 11122233333333232 468999999986531 111 12112 12233 45666665433
Q ss_pred Hhh-------hhccCceeeccCCChhhHHHHHHHHhccCcc-CCCCChHHHHHHHHHHhCCcc
Q 038398 269 ICG-------ALKAHEFLKVECLGPEDAWRLFRENLRRDVL-DNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 269 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlP 323 (720)
... ...-...+.+++++.++..+++......... ..-.-..+....+++.+.++.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 311 1122358999999999999997544322110 011122455666777776543
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.17 E-value=3.9e-05 Score=79.86 Aligned_cols=145 Identities=10% Similarity=0.111 Sum_probs=83.4
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
++++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... +.+++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 5679999999999999977654 567779999999999999998875 211 23444433 112111111111100
Q ss_pred CCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--c-ccccccccCCCCCCCcEEEEEcCChhH-hh-hhccCcee
Q 038398 205 FFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--V-DLTKVGIPFPDPENKSKIVFTTHFLEI-CG-ALKAHEFL 279 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~-~~~~l~~~~~~~~~gs~iiiTtR~~~v-~~-~~~~~~~~ 279 (720)
. . .+.+.+-++|+||++.. . ....+...+.....++++|+||....- .. .......+
T Consensus 94 -~----------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 -T----------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred -h----------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 0 01134558899999754 1 112222222233456788888865332 11 11122456
Q ss_pred eccCCChhhHHHHHHH
Q 038398 280 KVECLGPEDAWRLFRE 295 (720)
Q Consensus 280 ~l~~L~~~e~~~Lf~~ 295 (720)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777778777766554
No 114
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.17 E-value=1.5e-05 Score=80.18 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=79.2
Q ss_pred CCCcCchHHHHHHHH---Hhc------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC
Q 038398 126 EPTVGLESTFDKVWR---CLG------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL 190 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~---~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 190 (720)
..++|.+..+++|.+ +.. ......+.++|++|+||||+|+.+++..... +.-....++.++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~- 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA- 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH-
Confidence 357898887766643 321 0234568899999999999999998765211 11111123333221
Q ss_pred CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc----------ccccccccCCCCCCCcEE
Q 038398 191 QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV----------DLTKVGIPFPDPENKSKI 260 (720)
Q Consensus 191 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~i 260 (720)
++. ... .... ......+.+.. ...+|++|+++... ....+...+........+
T Consensus 84 ---~l~----~~~-------~g~~-~~~~~~~~~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 84 ---DLV----GEY-------IGHT-AQKTREVIKKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred ---Hhh----hhh-------ccch-HHHHHHHHHhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 111 110 0001 11111222211 23488999997521 222332223222233345
Q ss_pred EEEcCChhHhh------h-h-ccCceeeccCCChhhHHHHHHHHhcc
Q 038398 261 VFTTHFLEICG------A-L-KAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 261 iiTtR~~~v~~------~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
|+++....... . . .....+++++++.++-.+++.+.+..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 55554322210 0 0 11245789999999999999887754
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5e-05 Score=85.00 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=108.4
Q ss_pred CCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcC--------------------CCCCcCEEEEE
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLG--------------------APNVFDVVIWV 184 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 184 (720)
.++||.+..++.+..++..+... .+.++|+.|+||||+|+.+...... ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 56899999999999999876654 5789999999999999988876521 0112332 122
Q ss_pred EecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE
Q 038398 185 VVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF 262 (720)
Q Consensus 185 ~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii 262 (720)
..+.......+. .+..++... -..+++-++|+|+++.. .....+...+......+.+|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222122222221 111111110 01234558899998753 234444433433334556555
Q ss_pred -EcCChhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 038398 263 -TTHFLEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGR 331 (720)
Q Consensus 263 -TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 331 (720)
||+...+... ......+++.+++.++....+...+...... .-.+.+..|++.++|-.- |+..+-.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr~al~~Lek 225 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMRDALSIFDQ 225 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444444322 2334679999999999999998877544311 124567889999998554 4444433
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=6.9e-05 Score=81.55 Aligned_cols=180 Identities=13% Similarity=0.164 Sum_probs=104.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCC-C----------------cC-EEEEEEe
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPN-V----------------FD-VVIWVVV 186 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~----------------f~-~~~wv~v 186 (720)
+++||.+..++.+..++..+... ++.++|+.|+||||+|+.+.+....... . +. .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 56899999999999999777655 5689999999999999998877521000 0 00 1122211
Q ss_pred cCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEc
Q 038398 187 SKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTT 264 (720)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTt 264 (720)
+....+..+.. +....... -..+++-++|+|+++.. .....+...+......+++|++|
T Consensus 94 as~~gId~IRe-lie~~~~~------------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 94 ASNRGIDDIRE-LIEQTKYK------------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred ccccCHHHHHH-HHHHHhhC------------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 11111111111 11111000 01135568899999753 22333333333333456666666
Q ss_pred CCh-hHhh-hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHH
Q 038398 265 HFL-EICG-ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALI 327 (720)
Q Consensus 265 R~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 327 (720)
.+. .+.. .......+++.+++.++....+...+..... .--.+.+..|++.++|.+--+.
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHH
Confidence 543 2211 1122367899999999999998877754331 1225678889999999875443
No 117
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.15 E-value=8.2e-06 Score=84.23 Aligned_cols=93 Identities=19% Similarity=0.147 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc--CCHHHHHHHHHHHhCCCCCccCCCChhHHHH---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD--LQLEKIQEKIGRRIGFFDESWKNGSLEDKTS--- 220 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--- 220 (720)
.-..++|+|++|+|||||++.+++.. . .++|+..+||.+.+. .++.++++.+...+-...-+...........
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 34689999999999999999999987 2 348999999999876 7889999998554322211001111111111
Q ss_pred -HHHHH-hccCcEEEEEecccc
Q 038398 221 -DILRI-LGKKKFLLLLDDIWE 240 (720)
Q Consensus 221 -~l~~~-l~~k~~LlVlDdv~~ 240 (720)
..... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 11111 357999999999854
No 118
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.14 E-value=3.8e-05 Score=77.96 Aligned_cols=154 Identities=10% Similarity=0.089 Sum_probs=80.7
Q ss_pred CCcCchHHHHHHHHHhc---C------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC
Q 038398 127 PTVGLESTFDKVWRCLG---E------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ 191 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 191 (720)
.++|.++.+++|.++.. - ....-+.++|++|+||||+|+.++.... ..+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH---
Confidence 46787776666544321 0 0123588999999999999988876652 112221112444432
Q ss_pred HHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc-----------cccccccccCCCCCCCcEE
Q 038398 192 LEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER-----------VDLTKVGIPFPDPENKSKI 260 (720)
Q Consensus 192 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~i 260 (720)
.+ +...+... ..... ..+.+.. ..-+|+||++... ..+..+...+.....+.+|
T Consensus 99 -~~----l~~~~~g~-------~~~~~-~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 99 -DD----LVGQYIGH-------TAPKT-KEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred -HH----HhHhhccc-------chHHH-HHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 12 22222110 11111 1222222 3368999998632 1122222233333345566
Q ss_pred EEEcCChhHhhhh--------ccCceeeccCCChhhHHHHHHHHhcc
Q 038398 261 VFTTHFLEICGAL--------KAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 261 iiTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
|+++.....-... .....+++++++.+|-.+++...+..
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 6666543221111 11356899999999999999887654
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=7.9e-05 Score=80.57 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=105.9
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC--------------------CCcCEEEE
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP--------------------NVFDVVIW 183 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~w 183 (720)
..+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+.+...... .+++ .++
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 36789999999999999977665 5678999999999999999988762110 0111 111
Q ss_pred EEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEE
Q 038398 184 VVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIV 261 (720)
Q Consensus 184 v~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii 261 (720)
+.-.....+..+ +.+...+.. .-..+++-++|+|+++.. .....+...+........+|
T Consensus 95 i~g~~~~gid~i-r~i~~~l~~------------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 95 IDGASHRGIEDI-RQINETVLF------------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eeccccCCHHHH-HHHHHHHHh------------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 110011111111 111111100 001246678999998643 22333333333333355666
Q ss_pred EEcC-ChhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 038398 262 FTTH-FLEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGR 331 (720)
Q Consensus 262 iTtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 331 (720)
++|. ...+... ......+++.++++++....+...+..... .--.+.+..|++.++|.+ .|+..+-.
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6553 3333221 223457899999999999888877654321 122567888999999965 45555444
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.2e-05 Score=84.48 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.++||.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.... ..... ....++.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c-~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC-TTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC------CCCCCccCHHHHHHhcCCC
Confidence 5789999999999999877654 45689999999999999999887621 00000 0011122222333332221
Q ss_pred CCCCcc---CCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-hhHhhh-
Q 038398 205 FFDESW---KNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-LEICGA- 272 (720)
Q Consensus 205 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~~- 272 (720)
...-.. .....++. ..+.+.+ .+++-++|+|+++.. .....+...+......+.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110000 01111221 2222222 235668999998643 3344443333333345566655543 333221
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALI 327 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 327 (720)
......+.+.+++.++....+...+...... --.+.+..|++.++|.+..+.
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1223568899999999998888877543311 125678899999999875443
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.13 E-value=0.00011 Score=73.08 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=113.7
Q ss_pred HHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHHhhhcCCCC---CcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC
Q 038398 135 FDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPN---VFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE 208 (720)
Q Consensus 135 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 208 (720)
++++.+++.. ...+-+.|+|.+|.|||++++++........+ .--.|+.|.....++...+...|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 4444554533 34577999999999999999999987632111 11158888888999999999999999998764
Q ss_pred ccCCCChhHHHHHHHHHhcc-CcEEEEEeccccccc-----cccccc---cCCCCCCCcEEEEEcCChhHhhhh-----c
Q 038398 209 SWKNGSLEDKTSDILRILGK-KKFLLLLDDIWERVD-----LTKVGI---PFPDPENKSKIVFTTHFLEICGAL-----K 274 (720)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-----~~~l~~---~~~~~~~gs~iiiTtR~~~v~~~~-----~ 274 (720)
. ..............++. +--+||+|++.+.-. -..+.. .+...-.=+-|.+-|+...-+-.. .
T Consensus 126 ~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 126 P--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred C--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 2 33444555555566655 445999999976311 111111 111111223455555432221111 1
Q ss_pred cCceeeccCCChhh-HHHHHHHHhccCcc--CCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 275 AHEFLKVECLGPED-AWRLFRENLRRDVL--DNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 275 ~~~~~~l~~L~~~e-~~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
-..++.++....++ ...|+......-.. ..+-...+++..|...++|+.=-+..+
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 12466777776544 44444333211111 222345789999999999987555443
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.12 E-value=2.3e-05 Score=76.27 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=91.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL 226 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (720)
...+.|+|+.|+|||.|.+++++...+ ...-..++|++ ..++...+...+.. .....+++.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~-----------~~~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRD-----------GEIEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHT-----------TSHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHc-----------ccchhhhhhh
Confidence 456899999999999999999998721 11122566764 34555555555532 1123344445
Q ss_pred ccCcEEEEEecccccc---cccc-ccccCC-CCCCCcEEEEEcCChh---------HhhhhccCceeeccCCChhhHHHH
Q 038398 227 GKKKFLLLLDDIWERV---DLTK-VGIPFP-DPENKSKIVFTTHFLE---------ICGALKAHEFLKVECLGPEDAWRL 292 (720)
Q Consensus 227 ~~k~~LlVlDdv~~~~---~~~~-l~~~~~-~~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 292 (720)
.+ -=+|++||++... .|.. +...+. ....|.+||+|++... +...+...-.+++++++.++...+
T Consensus 96 ~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 RS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp CT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred hc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 43 3378899997532 1221 111111 1134678999996432 233344556899999999999999
Q ss_pred HHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 293 FRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
+.+.+...... --++++.-|++.+.+..-.+
T Consensus 175 l~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 175 LQKKAKERGIE---LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHTT-----S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHH
Confidence 99988754422 22566777777766544433
No 123
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=2.5e-05 Score=82.11 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=71.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
.+.++.+..++.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||.+++..+..++...+.-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP---- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP---- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----
Confidence 45788899999999998653 567789999999999999999987 44457888999999998887766542211
Q ss_pred CCCccCCCChhHHHHHHHHHh--ccCcEEEEEecccc
Q 038398 206 FDESWKNGSLEDKTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
........ ..-..+.+...- .++++++|+|++..
T Consensus 248 ~~vgy~~~-~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 248 NGVGFRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCCCeEec-CchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 00000000 011112222222 24689999999864
No 124
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=2.9e-06 Score=86.36 Aligned_cols=295 Identities=17% Similarity=0.174 Sum_probs=184.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-CEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-DVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
..+.+.++|.|||||||++-.+.+ . ..-| +.+.++....-.+...+.-.+...++... .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999988 4 3344 57778888777777777777777777653 223445556777
Q ss_pred HhccCcEEEEEeccccccc-cccccccCCCCCCCcEEEEEcCChhHhhhhccCceeeccCCChh-hHHHHHHHHhccCc-
Q 038398 225 ILGKKKFLLLLDDIWERVD-LTKVGIPFPDPENKSKIVFTTHFLEICGALKAHEFLKVECLGPE-DAWRLFRENLRRDV- 301 (720)
Q Consensus 225 ~l~~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~- 301 (720)
...+++.++|+||.....+ -......+..+...-.|+.|+|.... ......+.+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 7888999999999754321 11111112223334567888885432 234456778888765 79999887764221
Q ss_pred -cCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHH----HHHHhcccCCCCCCCccchhhHHhhcCCCCC
Q 038398 302 -LDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYA----IQVLRRSASEFPGMGKEVYPLLKFSYDSLPD 376 (720)
Q Consensus 302 -~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~----l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 376 (720)
......-.....+|.++..|.|++|...++..+. ....+-... ...+........--+......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1122233567889999999999999999988775 222222111 1112221111111123677889999999998
Q ss_pred cchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHHHHHHHHhccccccCCCCCcccCCceEEEehH
Q 038398 377 DTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHD 456 (720)
Q Consensus 377 ~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHd 456 (720)
..+..|.-++.|...+... ...|.+.|-... .........+..+++.+++.-.. ......|+.-+
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~------~~~~a~~Rl~e 304 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALD------LLGRARYRLLE 304 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhh------hhhHHHHHHHH
Confidence 7888899999998776554 234545443221 12233444567788888765443 11234455556
Q ss_pred HHHHHHHHHHhh
Q 038398 457 VIRDMVLWIACK 468 (720)
Q Consensus 457 lv~~~a~~~~~~ 468 (720)
-.+.|+..+-.+
T Consensus 305 T~r~YalaeL~r 316 (414)
T COG3903 305 TGRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHHh
Confidence 666676666544
No 125
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=8.3e-05 Score=83.21 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.+++|.+..++.+..++..+++ +.+.++|+.|+||||+|+.++........... +- .+. -.... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~----pC~---~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LE----PCQ---ECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CC----chh---HHHHh---hc
Confidence 5679999999999999987654 56689999999999999999877521100000 00 000 00000 00
Q ss_pred CCCC-----ccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEE-EEcCChhHhh
Q 038398 205 FFDE-----SWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIV-FTTHFLEICG 271 (720)
Q Consensus 205 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ii-iTtR~~~v~~ 271 (720)
...+ .......++ ++.+.+.+ .+++-++|+|+++.. ..+..+...+........+| +|++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0000 000011111 22222222 245668999998743 23444433333323344444 4544444432
Q ss_pred -hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 038398 272 -ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGR 331 (720)
Q Consensus 272 -~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~ 331 (720)
.......+++.+++.++....+...+...... .-.+.+..|++.++|.+ .|+..+-.
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22334689999999999999888766543211 12456788999998865 45555544
No 126
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.09 E-value=3.1e-05 Score=82.45 Aligned_cols=169 Identities=20% Similarity=0.295 Sum_probs=96.7
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|+++.++++.+.+.. ...+.|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4568999999998876521 235678999999999999999999886 222 232221
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc------------c----cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV------------D----LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~ 253 (720)
..+ ..... .........+.+.. ...+.+|+|||++... . +..+...+. .
T Consensus 199 ~~l----~~~~~--------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SEL----VQKFI--------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHH----hHhhc--------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 11110 01122222333322 3467899999997521 0 111111111 1
Q ss_pred CCCCcEEEEEcCChhHhh-hh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc
Q 038398 254 PENKSKIVFTTHFLEICG-AL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL 322 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 322 (720)
...+..||.||....... .+ .-...+.+++.+.++-.++|+.++.......... ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 123556777776543321 11 1235789999999999999998876543222223 45566677664
No 127
>CHL00181 cbbX CbbX; Provisional
Probab=98.08 E-value=5.6e-05 Score=76.62 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=81.2
Q ss_pred CCcCchHHHHHHHHHh---c-----C-------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC
Q 038398 127 PTVGLESTFDKVWRCL---G-----E-------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ 191 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L---~-----~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 191 (720)
.++|.++.+++|.++. . . .....+.++|++|+||||+|+.+++.... .+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH---
Confidence 4678777666554332 1 0 12235788999999999999999876511 11111112444442
Q ss_pred HHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc-----------cccccccccCCCCCCCcEE
Q 038398 192 LEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER-----------VDLTKVGIPFPDPENKSKI 260 (720)
Q Consensus 192 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~i 260 (720)
..+ ...+... .... ...+.+.. ..-+|+||++... +....+...+.....+.+|
T Consensus 100 -~~l----~~~~~g~-------~~~~-~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~v 164 (287)
T CHL00181 100 -DDL----VGQYIGH-------TAPK-TKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVV 164 (287)
T ss_pred -HHH----HHHHhcc-------chHH-HHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 122 2222100 1111 11222212 2349999998642 1112222223333345667
Q ss_pred EEEcCChhHhhhh--------ccCceeeccCCChhhHHHHHHHHhccC
Q 038398 261 VFTTHFLEICGAL--------KAHEFLKVECLGPEDAWRLFRENLRRD 300 (720)
Q Consensus 261 iiTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 300 (720)
|+++....+.... .....+.+++++.+|..+++...+...
T Consensus 165 I~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 7777543332111 123578999999999999988887543
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00013 Score=79.51 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=101.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCce-EEEEEcCCCChHHHHHHHHHhhhcCCCC------------------CcCEEEEEEe
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPN------------------VFDVVIWVVV 186 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~v 186 (720)
.+++|.+..++.+..++..+... .+.++|+.|+||||+|+.++........ .|..++++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 56799999999999999876544 5678999999999999998876521000 0111122211
Q ss_pred cCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcE
Q 038398 187 SKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSK 259 (720)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 259 (720)
+.... .+ ..+.+.+.. .+++-++|+|+++.. .....+...+........
T Consensus 96 as~~g-----------------------vd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 ASNRG-----------------------ID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred ccCCC-----------------------HH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111 11 111222222 245669999998743 223333333333233445
Q ss_pred EEEEc-CChhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 260 IVFTT-HFLEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 260 iiiTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
+|++| +...+... ......+.+.+++.++....+...+...... .-.+.+..|++.++|.+..+
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 55444 43333221 2233578899999999998888876543311 22456778888999866543
No 129
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.00016 Score=74.76 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=122.2
Q ss_pred CCCCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 124 PCEPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
++...+|||.++..+..|+.. ...+-+.|.|-+|.|||.+...++.+... ...-..++++++..-.....++..|
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-SSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-hcccceeEEEeeccccchHHHHHHH
Confidence 346679999999999999854 45678999999999999999999998721 1111256788776656667777777
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhccC--cEEEEEecccccc--ccccccccCC-CCCCCcEEEEEcCCh--h----
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILGKK--KFLLLLDDIWERV--DLTKVGIPFP-DPENKSKIVFTTHFL--E---- 268 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~--~~~~l~~~~~-~~~~gs~iiiTtR~~--~---- 268 (720)
...+-.... ......+....+.....+. .+|+|+|+.+... .-..+...|. ..-.++++|+.---. +
T Consensus 227 ~~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 227 FSSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 777621111 1222355666666666553 5899999986421 1111111121 122455655432111 1
Q ss_pred Hhhh-----hccCceeeccCCChhhHHHHHHHHhccCccC--CCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 038398 269 ICGA-----LKAHEFLKVECLGPEDAWRLFRENLRRDVLD--NHPDIPELARSVAQECAGLPLALITIGRA 332 (720)
Q Consensus 269 v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~--~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 332 (720)
.... ......+..+|.+.++-.+++..+....... .+..++-.|++++...|-+-.|+.+.-++
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1111 1223567889999999999999987643311 11123333444444444455555554433
No 130
>PF14516 AAA_35: AAA-like domain
Probab=98.08 E-value=0.00027 Score=73.55 Aligned_cols=200 Identities=15% Similarity=0.128 Sum_probs=118.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-----CCHHHHH----
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-----LQLEKIQ---- 196 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~---- 196 (720)
+-.|.|...-+++.+.+.+. -..+.|.|+-.+|||||..++.+... +..+ .++++++... .+....+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 34589997777888877653 36899999999999999999998872 2233 4567877652 2344444
Q ss_pred HHHHHHhCCCCCc---c--CCCChhHHHHHHHHHh---ccCcEEEEEecccccccc----ccccccCC----C-----CC
Q 038398 197 EKIGRRIGFFDES---W--KNGSLEDKTSDILRIL---GKKKFLLLLDDIWERVDL----TKVGIPFP----D-----PE 255 (720)
Q Consensus 197 ~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~l~~~~~----~-----~~ 255 (720)
..+.++++....- + ...........+.+.+ .+++.+|+||+|+..... ..+...+. . ..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 4555555543210 0 0112223333344432 258999999999753221 11111000 0 00
Q ss_pred CCcEEE-EEcCChhHhhh-----hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 256 NKSKIV-FTTHFLEICGA-----LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 256 ~gs~ii-iTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
..-+++ +.+........ ......++|++++.+|..+|...+-..- -.+..++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHH
Confidence 111122 22211111111 1123568999999999999998763321 1233899999999999999999
Q ss_pred HHHHhcC
Q 038398 330 GRAMACK 336 (720)
Q Consensus 330 ~~~l~~~ 336 (720)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9998763
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00011 Score=81.46 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=107.6
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
..++||.+..++.+..++..+.. +.+.++|+.|+||||+|+.+++..... ..... ..+.. -...+.+...-
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~---~pC~~----C~~C~~i~~~~ 86 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTP---MPCGE----CSSCKSIDNDN 86 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCC---CCCcc----chHHHHHHcCC
Confidence 35789999999999999987654 468899999999999999998876211 11000 00000 00001111110
Q ss_pred CCCC---CccCCCChhHHHHHHHH-----HhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-hhHhhh
Q 038398 204 GFFD---ESWKNGSLEDKTSDILR-----ILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-LEICGA 272 (720)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~~ 272 (720)
.... +.......++.. .+.+ -..+++-++|+|+++.. ..+..+...+......+.+|++|.. ..+...
T Consensus 87 ~~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 000011122221 1211 12356668999998753 3344444344333345666655543 333221
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHH
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIG 330 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 330 (720)
......+++.+++.++....+...+..... +--.+.+..|++.++|.+- |+..+-
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~alslLd 222 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYTLFD 222 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223356899999999998888887654331 1225667789999999774 444443
No 132
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=5.9e-07 Score=97.07 Aligned_cols=124 Identities=29% Similarity=0.411 Sum_probs=92.0
Q ss_pred ccceeEEEeccccccc-CCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 493 WRNVRRMSLMKNKIEN-LSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
+..+..+++..|.+.. ......+.+|..|++.+|.+..+... +..+++|++|+|++|.+. .+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccc-ccc-chhhccchhhhee
Confidence 3455566677777776 33367889999999999998887653 678999999999999554 443 5778888999999
Q ss_pred cCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 572 SSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 572 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
++|.|+.++ .+..+++|+.+++++ +.+..++......+.+++.+.+.+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~-n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSY-NRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCc-chhhhhhhhhhhhccchHHHhccC
Confidence 999999886 466799999999999 455555541025556655555554
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=6e-05 Score=75.75 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=104.3
Q ss_pred CCCcCchHHHHHHHHHhcCCC---ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQ---VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
+.+.+||.++..+..++.+.. +.+|.|+|-.|.|||.+.+++++.. .. ..+|+++-..++.+.++..|+.+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CC-----cceeeehHHhccHHHHHHHHHHH
Confidence 467899999999999997643 3566899999999999999999886 21 35899999999999999999999
Q ss_pred hCCCC-Ccc-CCCChhH---HHHHHHH--Hhc--cCcEEEEEeccccccccccccc----cCC--CCCCCcEEEEEcCC-
Q 038398 203 IGFFD-ESW-KNGSLED---KTSDILR--ILG--KKKFLLLLDDIWERVDLTKVGI----PFP--DPENKSKIVFTTHF- 266 (720)
Q Consensus 203 l~~~~-~~~-~~~~~~~---~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l~~----~~~--~~~~gs~iiiTtR~- 266 (720)
....+ +.. ...+.+. ....+.+ ... ++.++||||+++...+.+...- .+. ...+.. +|+++-.
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~ 158 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPS 158 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccc
Confidence 95222 111 1111111 2222222 112 3589999999987555443210 000 112233 3333322
Q ss_pred --hhHhhhhccC--ceeeccCCChhhHHHHHHHH
Q 038398 267 --LEICGALKAH--EFLKVECLGPEDAWRLFREN 296 (720)
Q Consensus 267 --~~v~~~~~~~--~~~~l~~L~~~e~~~Lf~~~ 296 (720)
......++.. -++..+..+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1222223433 34677899999999998653
No 134
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=4.2e-05 Score=82.69 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=100.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
..+.|+|..|+|||+|++++++.... ...-..+++++. .++...+...+... ......+.+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~------~~f~~~~~~~l~~~---------~~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSG------DEFARKAVDILQKT---------HKEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHHh---------hhHHHHHHHHhc
Confidence 56889999999999999999986521 112224556543 45666666665321 012233444444
Q ss_pred cCcEEEEEecccccc---c-cccccccCCC-CCCCcEEEEEcCChh-H--------hhhhccCceeeccCCChhhHHHHH
Q 038398 228 KKKFLLLLDDIWERV---D-LTKVGIPFPD-PENKSKIVFTTHFLE-I--------CGALKAHEFLKVECLGPEDAWRLF 293 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~iiiTtR~~~-v--------~~~~~~~~~~~l~~L~~~e~~~Lf 293 (720)
..-+||+||+.... . .+.+...+.. ...|..||+|+.... . ...+...-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 34488899996432 1 1222222211 123557888875432 2 223334457789999999999999
Q ss_pred HHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 294 RENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
.+++...... ..--+++..-|++.++|.|-.+.-+.
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9988643211 12336788999999999887765554
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=8.3e-05 Score=83.06 Aligned_cols=197 Identities=13% Similarity=0.111 Sum_probs=106.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.+++||.+..++.+.+++..+.+ ..+.++|+.|+||||+|+.+.+..... ...+ ...++.......|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~-------~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE-QGLT-------AEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC-CCCC-------CCCCCccHHHHHHhcCC
Confidence 36789999999999999987665 456899999999999999998775211 1000 00001011111111000
Q ss_pred CCCC---CccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-EcCChhHhhh
Q 038398 204 GFFD---ESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF-TTHFLEICGA 272 (720)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii-TtR~~~v~~~ 272 (720)
.... +.......++ ++.+.+.+ .+++-++|+|+++.. .....+...+......+.+|+ ||....+...
T Consensus 87 ~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 0000011111 12222222 234558899999753 223333333323233455554 4444444322
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHHHH
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGRAM 333 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 333 (720)
......+++.+++.++....+...+...... --.+....|++.++|.. .|+..+-.++
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2233578899999999888887766543211 12556778899998854 5666654443
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.03 E-value=3.6e-05 Score=88.95 Aligned_cols=156 Identities=15% Similarity=0.266 Sum_probs=90.7
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCC--CCCc-CEEEEEEecCcCCHHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNVF-DVVIWVVVSKDLQLEKIQEKIGR 201 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~v~~~~~~~~~~~~i~~ 201 (720)
.++++||++++++++..|......-+.++|++|+|||++|+.+++..... ...+ +..+|. + +...+ ..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LA 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hh
Confidence 35789999999999999977666677899999999999999999886211 1111 233332 1 11111 11
Q ss_pred HhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEecccccc----------cccc-ccccCCCCCCC-cEEEEEcCChh
Q 038398 202 RIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWERV----------DLTK-VGIPFPDPENK-SKIVFTTHFLE 268 (720)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~-l~~~~~~~~~g-s~iiiTtR~~~ 268 (720)
... ...+.++....+.+.+. .++.+|++|+++... +... +...+ ..| -++|-+|...+
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEE 322 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHH
Confidence 000 11233344444444443 468899999987421 1111 22222 223 34555554322
Q ss_pred Hhh-------hhccCceeeccCCChhhHHHHHHHHhc
Q 038398 269 ICG-------ALKAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 269 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
... ...-...++++.++.++..+++.....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 211 111235789999999999999986643
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00019 Score=80.52 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=106.5
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
...++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.... ...+... ...++.....+.+....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c--~~~~~~~----~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC--LNSDKPT----PEPCGKCELCRAIAAGN 88 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC--CCcCCCC----CCCCcccHHHHHHhcCC
Confidence 35679999999999999977653 57889999999999999999988621 1111000 01122222223332222
Q ss_pred CCCC---CccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-hhHhhh
Q 038398 204 GFFD---ESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-LEICGA 272 (720)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~~ 272 (720)
.... +.......++. +.+.+.+ .+++-++|+|+++.. .....+...+........+|++|.+ ..+...
T Consensus 89 h~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 1110 00011111122 1222222 245568999999753 2344443333332334455544433 333221
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHH
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALI 327 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 327 (720)
......+++..++.++....+...+...... --.+.+..|++.++|.+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~---is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIE---IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 2233567888999999888887776543211 124568889999999775443
No 138
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00019 Score=71.78 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=107.3
Q ss_pred cCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 129 VGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
=|-++.+++|.+.+.- +.++-|.++|++|.|||-||++|+++. ... |+.|...
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS------ 219 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS------ 219 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH------
Confidence 4889999988887632 356789999999999999999999987 333 3433322
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHHhcc-CcEEEEEecccccc----------c------cccccccCC--CCCC
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRILGK-KKFLLLLDDIWERV----------D------LTKVGIPFP--DPEN 256 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~----------~------~~~l~~~~~--~~~~ 256 (720)
++.++.-. +-..+...+.+.-+. .+.+|.+|.++... + ..++...+. +...
T Consensus 220 --ElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 --ELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred --HHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 22222211 123455555555554 58999999986410 0 112222222 2234
Q ss_pred CcEEEEEcCChhHhhh-----hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc----hHHH
Q 038398 257 KSKIVFTTHFLEICGA-----LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP----LALI 327 (720)
Q Consensus 257 gs~iiiTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----Lai~ 327 (720)
.-|||.+|...++... -.-+..++++.-+.+.-.++|+-++.........+++ .+++.|.|.- .|+-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHH
Confidence 6789988865554322 1234678888667777778888887766544445544 4555666654 3444
Q ss_pred HHHHHH
Q 038398 328 TIGRAM 333 (720)
Q Consensus 328 ~~~~~l 333 (720)
+=|+++
T Consensus 366 tEAGm~ 371 (406)
T COG1222 366 TEAGMF 371 (406)
T ss_pred HHHhHH
Confidence 445554
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.99 E-value=4.7e-05 Score=81.14 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=95.1
Q ss_pred CCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 127 PTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++.|.+..+++|.+.+.- .....|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 457999999888776631 234578899999999999999999986 3333 222211
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHH-HHhccCcEEEEEeccccccc----------------cccccccCC--CC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDIL-RILGKKKFLLLLDDIWERVD----------------LTKVGIPFP--DP 254 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 254 (720)
.+. ... ... .......+. ....+.+.+|+||+++.... +..+...+. ..
T Consensus 252 eL~----~k~-------~Ge-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ELI----QKY-------LGD-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred hhh----hhh-------cch-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111 111 000 111222222 22235688999999863210 001111111 11
Q ss_pred CCCcEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 255 ENKSKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 255 ~~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
..+.+||.||........ . .....++++..+.++..++|..++.......... ...++..+.|+-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 235678888875544322 1 2245789999999999999998875543222223 344555665543
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00022 Score=79.27 Aligned_cols=195 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.++++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+....... ..-+ ...++.....+.+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCccHHHHHHhcCC
Confidence 36789999999999999977654 557789999999999999998765211 1000 00111111111111111
Q ss_pred CCCCCcc---CCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-EcCChhHhhh
Q 038398 204 GFFDESW---KNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF-TTHFLEICGA 272 (720)
Q Consensus 204 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii-TtR~~~v~~~ 272 (720)
....-.. .....+ ....+.+. ..+++-++|+|+++.. ..+..+...+........+|+ ||....+...
T Consensus 87 ~~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 1000000 001111 11222222 1345668899999753 233344333322223444444 4444333221
Q ss_pred -hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 038398 273 -LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGR 331 (720)
Q Consensus 273 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 331 (720)
......+++.+++.++....+...+...... --.+.+..|++.++|.+. |+..+-.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~al~~Ldq 223 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRDALSILDQ 223 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2233568899999999998888877543311 124567788888888664 4444433
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.98 E-value=7.3e-05 Score=79.15 Aligned_cols=170 Identities=14% Similarity=0.189 Sum_probs=95.8
Q ss_pred CCCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
.++.|.+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 456899988888877652 1 235779999999999999999999876 2333 22211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHH-HhccCcEEEEEecccccc------------c----cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILR-ILGKKKFLLLLDDIWERV------------D----LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~ 253 (720)
..+ ..... ... ......+.. .....+.+|+||+++... . +..+...+. .
T Consensus 213 s~l----~~k~~-------ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 SEF----VQKYL-------GEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHH----HHHhc-------chh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111 11110 001 112222222 234578999999986421 0 111111111 1
Q ss_pred CCCCcEEEEEcCChhHhhh--h---ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEICGA--L---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||+||........ . .-...++++..+.++..++|..+..........+ ..++++.+.|+.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 2235678888865443221 1 2245688999999998888887765433222223 345566676653
No 142
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=9.1e-07 Score=75.40 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=81.1
Q ss_pred eeEEEecccccccCCC----CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 496 VRRMSLMKNKIENLSE----TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
+..++|+.|.+-.++. .....+|...++++|.+++.|+.+-.+++.++.|+|++| -+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 4446666665543322 245567788888888888888887777778888888888 45578888888888888888
Q ss_pred cCCCCcccchhhhcCCCCCEEeccCCcCCCCCch
Q 038398 572 SSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPR 605 (720)
Q Consensus 572 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 605 (720)
+.|.+...|.-|..|.+|-.|+..+ +.+..+|-
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 8888888888888888888888876 45555664
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.95 E-value=4.8e-05 Score=73.58 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=78.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
+.+.|+|++|+|||+|++.+++.. .. .++. ... .. + +.++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~--------------------~~---~-------~~~~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIF--------------------FN---E-------EILE 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhh--------------------hc---h-------hHHh
Confidence 568999999999999999988765 11 2221 000 00 0 0111
Q ss_pred cCcEEEEEeccccccc--cccccccCCCCCCCcEEEEEcCChhH-------hhhhccCceeeccCCChhhHHHHHHHHhc
Q 038398 228 KKKFLLLLDDIWERVD--LTKVGIPFPDPENKSKIVFTTHFLEI-------CGALKAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~iiiTtR~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
..-++++||++...+ +-.+...+ ...|..||+|++.... ...+...-.+++++++.++-..++.+.+.
T Consensus 85 -~~d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 -KYNAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -cCCEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 234788899974321 11111111 1346789998874322 23333445899999999998888888765
Q ss_pred cCccCCCCChHHHHHHHHHHhCCcc
Q 038398 299 RDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 299 ~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
..... --+++..-|++.+.|--
T Consensus 162 ~~~l~---l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 162 ISSVT---ISRQIIDFLLVNLPREY 183 (214)
T ss_pred HcCCC---CCHHHHHHHHHHccCCH
Confidence 43211 22667788888877643
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.93 E-value=5.5e-05 Score=81.82 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=88.5
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCC---CCcCEEEEEEecCc
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP---NVFDVVIWVVVSKD 189 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~ 189 (720)
.++.|.+..++++.+.+.. ...+-|.++|++|+|||++|+++++... .. .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch
Confidence 4457899999988776521 2346689999999999999999999872 11 01224455554432
Q ss_pred CCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-----ccCcEEEEEecccccc---------cc-----cccccc
Q 038398 190 LQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWERV---------DL-----TKVGIP 250 (720)
Q Consensus 190 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---------~~-----~~l~~~ 250 (720)
. + +... . ...+.....+.+.. .+++++|+||+++... +. ..+...
T Consensus 261 e----L----l~ky-------v-Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 261 E----L----LNKY-------V-GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred h----h----cccc-------c-chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 1 1 1110 0 01111222222221 2478999999997421 11 112111
Q ss_pred CCC--CCCCcEEEEEcCChhHhh-hh----ccCceeeccCCChhhHHHHHHHHhcc
Q 038398 251 FPD--PENKSKIVFTTHFLEICG-AL----KAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 251 ~~~--~~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
+.. ...+..||.||....... .+ .-...++++..+.++..++|..++..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 211 113444555664443321 11 22456899999999999999988753
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.93 E-value=8.7e-05 Score=87.14 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=88.9
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCC----cCE-EEEEEecCcCCHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNV----FDV-VIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~-~~wv~v~~~~~~~~~~~~i 199 (720)
.+++|||++++++++..|.......+.++|++|+|||++|+.+..+... ... ... ++++.+ ..+
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l---- 240 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GAL---- 240 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHH----
Confidence 3568999999999999997766666778999999999999999887621 111 122 222221 111
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEecccccc---------ccccccccCCCCCCCcEEEEEcCChh
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERV---------DLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
.. +.. ...+.+.....+...+. +++.+|++|++.... +...+..+... ...-++|-+|..+.
T Consensus 241 ~a--~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e 313 (852)
T TIGR03346 241 IA--GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDE 313 (852)
T ss_pred hh--cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHH
Confidence 10 000 11123333333433332 368999999997432 11112112111 12245555555444
Q ss_pred Hhh-------hhccCceeeccCCChhhHHHHHHHHh
Q 038398 269 ICG-------ALKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 269 v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
.-. ...-...+.++..+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 311 11223567899999999999887654
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=6.1e-06 Score=79.65 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=70.5
Q ss_pred eeEEEecccccccCCCC----CCCCcccEEEccCCCCcCc--chHHhccCCcccEEEccCCCCC---ccCCccccCCCCC
Q 038398 496 VRRMSLMKNKIENLSET----PTCPHLLSLFLSDNSLKMS--TDDFFQSMPSLRVFNMSNNHLL---WKLPSGISTLVSL 566 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~~l~~L 566 (720)
+.-+.+.++.|...... ..+..++.|++.+|.+..- ....+.+||.|++|+|++|+.. +.+| -.+.+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 33566666666554332 5678999999999976542 2345789999999999999653 2333 356799
Q ss_pred CEEeccCCCCc--ccchhhhcCCCCCEEeccCC
Q 038398 567 EHLDLSSTAIT--HLPIELQKLVNLKCLNLEYM 597 (720)
Q Consensus 567 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~ 597 (720)
++|.|.++.+. .....+..++.++.|.++.|
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 99999998654 55556778888888888874
No 147
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.5e-05 Score=55.10 Aligned_cols=39 Identities=46% Similarity=0.630 Sum_probs=21.6
Q ss_pred CCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCc
Q 038398 565 SLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFP 604 (720)
Q Consensus 565 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp 604 (720)
+|++|++++|+|+.+|+.+++|++|+.|++++| .+.++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 456666666666666655666666666666663 344443
No 148
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=2.6e-05 Score=81.08 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=48.8
Q ss_pred cccccceeEEEecccccccCCCCCCCCcccEEEccCC-CCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDN-SLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
+..+.++++|++++|.+..+|.++ ++|++|.+++| .++.+|.. + .++|++|++++|..+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccce
Confidence 344567778888888777766322 35777877765 44444432 2 24677777777755555654 3555
Q ss_pred EeccCCC---Ccccchh
Q 038398 569 LDLSSTA---ITHLPIE 582 (720)
Q Consensus 569 L~L~~~~---i~~lp~~ 582 (720)
|+++++. +..+|++
T Consensus 117 L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 117 LEIKGSATDSIKNVPNG 133 (426)
T ss_pred EEeCCCCCcccccCcch
Confidence 5565543 4455543
No 149
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1e-06 Score=84.86 Aligned_cols=185 Identities=18% Similarity=0.132 Sum_probs=131.6
Q ss_pred CcccEEEccCCCCcCcc-hHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC-CCcccc--hhhhcCCCCCE
Q 038398 516 PHLLSLFLSDNSLKMST-DDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST-AITHLP--IELQKLVNLKC 591 (720)
Q Consensus 516 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp--~~i~~l~~L~~ 591 (720)
..|+.|+++...++.-. ...+..+.+|+-|.|.|++....+...|..=.+|+.|+|++| .+++.- --+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46889999988665432 334778999999999999887777778888899999999998 577542 23788999999
Q ss_pred EeccCCcCCCCCchhhhh-ccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhh
Q 038398 592 LNLEYMNNLNQFPRLVIS-AFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLI 670 (720)
Q Consensus 592 L~l~~~~~l~~lp~~~~~-~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~ 670 (720)
|+++.|......-..++. --.+|..|++.+|..|-.. .....-...+++|..|+++.+..-.- .+..
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-----------sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~ 332 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-----------SHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQ 332 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-----------hHHHHHHHhCCceeeeccccccccCc-hHHH
Confidence 999998544433221122 2346788999988776311 11222345789999999986654332 3344
Q ss_pred hhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 671 SQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 671 ~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
.+..++.|++|+++.|=.+..--+-.+...|+|.+|++.||-
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 555667999999999865433333357889999999999985
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.88 E-value=9.1e-05 Score=86.60 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=87.9
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcC--CCCC-cC-EEEEEEecCcCCHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG--APNV-FD-VVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~-f~-~~~wv~v~~~~~~~~~~~~i~ 200 (720)
.+++|||+.++++++..|.......+.++|++|+|||++|+.+...... +... .. .++++.++. +.
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~---- 246 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 246 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----
Confidence 3678999999999999997766667779999999999999999988621 0000 12 233333221 10
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHh--ccCcEEEEEecccccc---------ccccccccCCCCCCCcEEEEEcCChhH
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRIL--GKKKFLLLLDDIWERV---------DLTKVGIPFPDPENKSKIVFTTHFLEI 269 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iiiTtR~~~v 269 (720)
.. .. .....++....+.+.+ .+++.+|++|+++... +...+..+.... ..-++|-+|..++.
T Consensus 247 ag--~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e~ 319 (857)
T PRK10865 247 AG--AK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEY 319 (857)
T ss_pred hc--cc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHHH
Confidence 00 00 1112233333333322 2468999999986532 111222121111 23456655554443
Q ss_pred hh-------hhccCceeeccCCChhhHHHHHHHHh
Q 038398 270 CG-------ALKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 270 ~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
-. ...-...+.+...+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 11122356677778898888886554
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=1.7e-05 Score=78.59 Aligned_cols=189 Identities=19% Similarity=0.139 Sum_probs=93.1
Q ss_pred ccccceeEEEeccccccc-----C-CCCCCCCcccEEEccCCC---C-cCcch------HHhccCCcccEEEccCCCCCc
Q 038398 491 QNWRNVRRMSLMKNKIEN-----L-SETPTCPHLLSLFLSDNS---L-KMSTD------DFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~---~-~~~~~------~~~~~l~~L~~L~L~~~~~~~ 554 (720)
..+..+..+++++|.+.. + +.+.+.++|+.-++++-- + ..+|+ ..+.++++|++||||.|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344567777888776532 0 112344566666665431 1 11111 123455677777777774433
Q ss_pred cCCcc----ccCCCCCCEEeccCCCCcccc--------------hhhhcCCCCCEEeccCCcCCCCCchhhh-hccccCc
Q 038398 555 KLPSG----ISTLVSLEHLDLSSTAITHLP--------------IELQKLVNLKCLNLEYMNNLNQFPRLVI-SAFSKLQ 615 (720)
Q Consensus 555 ~lp~~----i~~l~~L~~L~L~~~~i~~lp--------------~~i~~l~~L~~L~l~~~~~l~~lp~~~~-~~l~~L~ 615 (720)
..+.. +..+..|++|.|.+|.+...- .-+..-++|+.+.... |.+..-+...+ ..+....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhcc
Confidence 33322 335566777777777665221 1133345677777665 34444332211 1122223
Q ss_pred eeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHH--Hhhhhhhhhhcccccccccc
Q 038398 616 VLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKE--LLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 616 ~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~--l~~~~~~~~~L~~L~l~~~~ 687 (720)
.|.-..|..|.|.+-. .......+..+++|++|++..|.++.-.. +....+..++|+.|+++.|.
T Consensus 186 ~leevr~~qN~I~~eG-------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEG-------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred ccceEEEecccccCch-------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3333344444432100 11334556677777777777666544332 22233334467777777764
No 152
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.86 E-value=0.00016 Score=78.00 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=91.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
..+.|+|++|+|||+|++++++... ....-..++|++. .++...+...+... .. ..+.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHHH
Confidence 5688999999999999999999872 1111124566643 34444555544311 11 22333333
Q ss_pred cCcEEEEEeccccccc---c-ccccccCCC-CCCCcEEEEEcCCh-hH--------hhhhccCceeeccCCChhhHHHHH
Q 038398 228 KKKFLLLLDDIWERVD---L-TKVGIPFPD-PENKSKIVFTTHFL-EI--------CGALKAHEFLKVECLGPEDAWRLF 293 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~iiiTtR~~-~v--------~~~~~~~~~~~l~~L~~~e~~~Lf 293 (720)
+ .-+|||||++.... + +.+...+.. ...|..+|+|+... .. ...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 3 34889999974321 1 112111110 12355688887642 21 122223356889999999999999
Q ss_pred HHHhccCccCCCCChHHHHHHHHHHhCCcchH
Q 038398 294 RENLRRDVLDNHPDIPELARSVAQECAGLPLA 325 (720)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 325 (720)
.+.+....... -+++...|++.+.|.+-.
T Consensus 278 ~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 278 QKKAEEEGLEL---PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHH
Confidence 98876543222 257778888888876553
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.85 E-value=9.1e-05 Score=86.70 Aligned_cols=180 Identities=17% Similarity=0.244 Sum_probs=98.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcC--CCCCc-CEEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG--APNVF-DVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
.+++||+++++++++.|......-+.++|++|+|||++|+.++..... +.... +..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 567999999999999997766666779999999999999999887621 11111 233442 1 111111 1
Q ss_pred hCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEecccccc---------ccccccccCCCCCCCcEEEEEcCChhHhhh
Q 038398 203 IGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWERV---------DLTKVGIPFPDPENKSKIVFTTHFLEICGA 272 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~ 272 (720)
+.. ...+.++....+.+.+. .++.+|++|+++... +...+..+... ...-++|.+|........
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKH 322 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHH
Confidence 111 11233444444444333 468999999996321 11111111111 123456666665543211
Q ss_pred -------hccCceeeccCCChhhHHHHHHHHhccCc-cCCCCChHHHHHHHHHHhCC
Q 038398 273 -------LKAHEFLKVECLGPEDAWRLFRENLRRDV-LDNHPDIPELARSVAQECAG 321 (720)
Q Consensus 273 -------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~G 321 (720)
......+.++..+.++...++........ .....--.+....+++.++|
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 12235678888999998888765432100 00001224555666666654
No 154
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00016 Score=78.19 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
..-+.|+|++|+|||+|++++++... ..... .++|++. .++...+...+... ..+ ...+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHH----HHHHH
Confidence 34699999999999999999999872 22233 5677753 34556665555311 112 23333
Q ss_pred hccCcEEEEEecccccc---cc-ccccccCC-CCCCCcEEEEEcC-ChhHh--------hhhccCceeeccCCChhhHHH
Q 038398 226 LGKKKFLLLLDDIWERV---DL-TKVGIPFP-DPENKSKIVFTTH-FLEIC--------GALKAHEFLKVECLGPEDAWR 291 (720)
Q Consensus 226 l~~k~~LlVlDdv~~~~---~~-~~l~~~~~-~~~~gs~iiiTtR-~~~v~--------~~~~~~~~~~l~~L~~~e~~~ 291 (720)
+..+.-+|++||+.... .. ..+...+. ....|..||+||. .+.-. ..+.....+.+++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33445689999997431 11 12211111 0123457888874 32221 122334577899999999999
Q ss_pred HHHHHhccCccCCCCChHHHHHHHHHHhCCcch
Q 038398 292 LFRENLRRDVLDNHPDIPELARSVAQECAGLPL 324 (720)
Q Consensus 292 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 324 (720)
++.+.+....... -+++...|++.+.|..-
T Consensus 271 IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 271 IARKMLEIEHGEL---PEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHHhcCCCC---CHHHHHHHHhccccCHH
Confidence 9998876433122 26678888888877543
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.7e-05 Score=54.80 Aligned_cols=40 Identities=35% Similarity=0.591 Sum_probs=27.0
Q ss_pred CcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccc
Q 038398 540 PSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLP 580 (720)
Q Consensus 540 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp 580 (720)
++|++|++++|++ ..+|..+++|++|++|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777743 466666777777777777777777665
No 156
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=2.9e-05 Score=80.67 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=97.1
Q ss_pred CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC-CCcccchhhhcCCCCCE
Q 038398 513 PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST-AITHLPIELQKLVNLKC 591 (720)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~ 591 (720)
..|+++..|++++|.++.+|. + ..+|+.|++++|.....+|..+. .+|++|++++| .+..+|.+ |+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 346889999999998888762 2 24699999999877778887653 68999999998 78888754 555
Q ss_pred EeccC--CcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHh
Q 038398 592 LNLEY--MNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELL 669 (720)
Q Consensus 592 L~l~~--~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~ 669 (720)
|++.+ |..+..+|. +|+.|.+.+...+....+ ...+ -++|+.|.+.++....+ +
T Consensus 117 L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~l------------p~~L--PsSLk~L~Is~c~~i~L---P 172 (426)
T PRK15386 117 LEIKGSATDSIKNVPN-------GLTSLSINSYNPENQARI------------DNLI--SPSLKTLSLTGCSNIIL---P 172 (426)
T ss_pred EEeCCCCCcccccCcc-------hHhheecccccccccccc------------cccc--CCcccEEEecCCCcccC---c
Confidence 66654 223444554 345555533211110000 0001 15788899986654321 1
Q ss_pred hhhhhhhhccccccccccCCCc--cccccccccCCcceeeecCCCCC
Q 038398 670 ISQELQRSTQSLFLRCFNDSKS--LDIFCLAGLRNLNKLYVAGCKHL 714 (720)
Q Consensus 670 ~~~~~~~~L~~L~l~~~~~l~~--l~~~~l~~l~~L~~L~l~~c~~l 714 (720)
...+.+|+.|+++.+. +.. ++...+. +++ .|++.+|-++
T Consensus 173 --~~LP~SLk~L~ls~n~-~~sLeI~~~sLP--~nl-~L~f~n~lkL 213 (426)
T PRK15386 173 --EKLPESLQSITLHIEQ-KTTWNISFEGFP--DGL-DIDLQNSVLL 213 (426)
T ss_pred --ccccccCcEEEecccc-cccccCcccccc--ccc-Eechhhhccc
Confidence 2244689999987643 222 2212232 456 7888887554
No 157
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.82 E-value=0.00017 Score=78.64 Aligned_cols=157 Identities=19% Similarity=0.175 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL 226 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (720)
...+.|+|++|+|||+|++++++... ....--.++|++. ..+...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTS------EKFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35689999999999999999999872 1111224566643 2334444444421 111 2333344
Q ss_pred ccCcEEEEEeccccccc----cccccccCC-CCCCCcEEEEEcCChh---------HhhhhccCceeeccCCChhhHHHH
Q 038398 227 GKKKFLLLLDDIWERVD----LTKVGIPFP-DPENKSKIVFTTHFLE---------ICGALKAHEFLKVECLGPEDAWRL 292 (720)
Q Consensus 227 ~~k~~LlVlDdv~~~~~----~~~l~~~~~-~~~~gs~iiiTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 292 (720)
+ +.-+|||||++.... .+.+...+. ....|..||+||.... +...+.....+++++++.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 4 344899999964211 112211111 0123456888876432 122333345789999999999999
Q ss_pred HHHHhccCccCCCCChHHHHHHHHHHhCCcchH
Q 038398 293 FRENLRRDVLDNHPDIPELARSVAQECAGLPLA 325 (720)
Q Consensus 293 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 325 (720)
+.+.+..... .--+++...|++.+.|..-.
T Consensus 289 l~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 289 LKKKAEEEGI---DLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHcCcCCCHHH
Confidence 9998764321 12357788888888886553
No 158
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00077 Score=64.59 Aligned_cols=183 Identities=18% Similarity=0.203 Sum_probs=106.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEec-CcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHH
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVS-KDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDIL 223 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (720)
++-+++.|+|.-|+|||+++++...... . +.++-|.+. ...+...+...+...+............++..+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~----~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN----E-DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC----C-CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4557999999999999999996655541 1 112223333 345667788888888866221111112233344444
Q ss_pred HHh-ccCc-EEEEEeccccc--cccccccccC--C-CCCCCcEEEEEcCCh-------hHhhhhc-cCce-eeccCCChh
Q 038398 224 RIL-GKKK-FLLLLDDIWER--VDLTKVGIPF--P-DPENKSKIVFTTHFL-------EICGALK-AHEF-LKVECLGPE 287 (720)
Q Consensus 224 ~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~~--~-~~~~gs~iiiTtR~~-------~v~~~~~-~~~~-~~l~~L~~~ 287 (720)
+.. ++++ ..++.||..+. ..++.++... . ....--+|+..-..+ .+..... -... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 443 3566 89999998653 2222221111 1 111112233322210 1111111 1123 899999999
Q ss_pred hHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 038398 288 DAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRA 332 (720)
Q Consensus 288 e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 332 (720)
+...++..+..+.....+---.+....|.....|.|.+|+.++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999998876642333334567788999999999999988743
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0017 Score=70.90 Aligned_cols=157 Identities=21% Similarity=0.252 Sum_probs=89.8
Q ss_pred CCcCchHHHHHHHHHhcC------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 127 PTVGLESTFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
+-+|.++.+++|++.|.- -.-+++.++||+|+|||+|++.++... ...| +-++++.-.|-.+|..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRG--- 394 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRG--- 394 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcc---
Confidence 458999999999999831 234799999999999999999999987 3344 2234444444443321
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc---------ccccccc---------cCCCCC-CCcEEE
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV---------DLTKVGI---------PFPDPE-NKSKIV 261 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~l~~---------~~~~~~-~gs~ii 261 (720)
....+...-+....+.+. ..+.+.-+++||.++... .+.++.. .+.... -=|+|+
T Consensus 395 -----HRRTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 395 -----HRRTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred -----ccccccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 110111111122222222 234466799999987421 1111111 110000 114444
Q ss_pred -EEcCC-hh-H-hhhhccCceeeccCCChhhHHHHHHHHhc
Q 038398 262 -FTTHF-LE-I-CGALKAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 262 -iTtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
|||-| -. + ...++...++++.+.+++|-.++-+++..
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 44433 22 2 23344557899999999999988888764
No 160
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=7.6e-07 Score=95.50 Aligned_cols=125 Identities=27% Similarity=0.372 Sum_probs=89.1
Q ss_pred ccccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEE
Q 038398 491 QNWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (720)
..|.+|...+.+.|.+..+... .-++.|+.|+|++|++++.. ++..|++|+.|||++|. +..+|.--..-.+|+.|
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLL 237 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheee
Confidence 3467788888888887665443 55689999999999988876 58899999999999994 44666422222349999
Q ss_pred eccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchh-hhhccccCceeecc
Q 038398 570 DLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRL-VISAFSKLQVLRMF 620 (720)
Q Consensus 570 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~l~~L~~L~~~ 620 (720)
++++|.++++- ++.+|.+|++||+++| .+...... -+..|..|+.|.+-
T Consensus 238 ~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 238 NLRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred eecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhc
Confidence 99999999884 6899999999999984 33333220 13344444444444
No 161
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00093 Score=68.64 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=106.6
Q ss_pred CCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC------------CCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP------------NVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~v~~~~~~ 192 (720)
.+++|.+..++.+...+..+.. ....++|+.|+||+++|..+........ ..+.-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 5679999999999999987764 7899999999999999998877652111 11122334321100000
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc-----cCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG-----KKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTH 265 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR 265 (720)
..+-...+...+...........++ ++.+.+.+. +++-++|+|+++.. .....+...+....+..-|++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 0000011111111000001111222 233444443 45668999998753 223333222322222333444444
Q ss_pred ChhHhh-hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 266 FLEICG-ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 266 ~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
...+.. ..+-...+++.++++++..+.+........ .......++..++|.|..+..
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 434332 223346889999999999999987643211 111236788999999965544
No 162
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.76 E-value=0.0007 Score=65.17 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=40.0
Q ss_pred CCCCCCCcCchHHHHHHHHHh----cCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 122 QRPCEPTVGLESTFDKVWRCL----GEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 122 ~~~~~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+.+.++|.|..++.|++-. ......-+.+||..|+|||++++++.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 334467899999998886643 33456778899999999999999999887
No 163
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.75 E-value=0.00042 Score=76.62 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=94.4
Q ss_pred CCCcCchHHHHHHHHHh---cC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCL---GE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..++++.+.+ .. ...+-+.++|++|+|||++|+.++... ... |+.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH----H
Confidence 45688887766655433 21 224568899999999999999999876 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----------------cccccccCC--CCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----------------LTKVGIPFP--DPE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 255 (720)
.+.. .. ...........+.......+.+|+|||++.... +..+...+. ...
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 11 001111222222333345678999999964210 001111111 122
Q ss_pred CCcEEEEEcCChhHhh-hh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHH
Q 038398 256 NKSKIVFTTHFLEICG-AL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITI 329 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 329 (720)
.+..||.||....... .+ .-...+.++..+.++-.++|..++....... ......+++.+.|. +--|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHHH
Confidence 3445666665443211 11 2345788999999999999988775432111 12245778888774 3444443
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.74 E-value=0.00033 Score=74.54 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=96.6
Q ss_pred CchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc
Q 038398 130 GLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES 209 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~ 209 (720)
-|..-..++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++..-.......-+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~------------ 81 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELL------------ 81 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHH------------
Confidence 344555666666654433 99999999999999998777665 222 55554332211110001
Q ss_pred cCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhh-----h-ccCceeeccC
Q 038398 210 WKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGA-----L-KAHEFLKVEC 283 (720)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~-----~-~~~~~~~l~~ 283 (720)
+....+...-..++..|+||.|....+|......+.+.++. +|++|+.+...... . +-...+++.|
T Consensus 82 -------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 82 -------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred -------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 11111111112277899999999999998776666555555 89998887665322 1 2245689999
Q ss_pred CChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 284 LGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 284 L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
||..|-..+-...+ .. .... ..-+-.-..||.|.++..
T Consensus 154 lSF~Efl~~~~~~~-----~~-~~~~-~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 154 LSFREFLKLKGEEI-----EP-SKLE-LLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCHHHHHhhccccc-----ch-hHHH-HHHHHHHHhCCCcHHHhC
Confidence 99999876543000 00 0111 122223356888887764
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00041 Score=74.79 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=90.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
.-+.|+|+.|+|||+|++++++... .....++|++ ...+...+...+... . ...+++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 5688999999999999999999872 1223455664 234444555554211 1 122333333
Q ss_pred cCcEEEEEeccccccc----cccccccCCC-CCCCcEEEEEcCCh-h--------HhhhhccCceeeccCCChhhHHHHH
Q 038398 228 KKKFLLLLDDIWERVD----LTKVGIPFPD-PENKSKIVFTTHFL-E--------ICGALKAHEFLKVECLGPEDAWRLF 293 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iiiTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~Lf 293 (720)
..-+|++||+..... .+.+...+.. ...|..||+||... . +...+.....+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 344888899864321 1122111110 12355788888542 1 1222333467889999999999999
Q ss_pred HHHhccCccCCCCChHHHHHHHHHHhCC-cchHHHHH
Q 038398 294 RENLRRDVLDNHPDIPELARSVAQECAG-LPLALITI 329 (720)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~ 329 (720)
.+.+...... --+++..-|++.+.| .|-....+
T Consensus 281 ~~k~~~~~~~---l~~evl~~la~~~~~dir~L~g~l 314 (445)
T PRK12422 281 ERKAEALSIR---IEETALDFLIEALSSNVKSLLHAL 314 (445)
T ss_pred HHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHHH
Confidence 8887653311 125566667776664 34333333
No 166
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=2.6e-05 Score=77.34 Aligned_cols=191 Identities=22% Similarity=0.232 Sum_probs=125.4
Q ss_pred CCCCCcccEEEccCCCCcCcc----hHHhccCCcccEEEccCCCCCc----cCCcc-------ccCCCCCCEEeccCCCC
Q 038398 512 TPTCPHLLSLFLSDNSLKMST----DDFFQSMPSLRVFNMSNNHLLW----KLPSG-------ISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~----~lp~~-------i~~l~~L~~L~L~~~~i 576 (720)
......+..+++++|.+..-. ...+.+.+.|+..++++- +.+ ++|.. +-..++|++|+||.|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 355678899999999774432 234677889999999874 333 34443 34667999999999976
Q ss_pred c-c----cchhhhcCCCCCEEeccCCcCCCCCchhhh----------hccccCceeeccccCCCcccchhcccccCCccc
Q 038398 577 T-H----LPIELQKLVNLKCLNLEYMNNLNQFPRLVI----------SAFSKLQVLRMFDCGGSKIERLKINVLFGGHQF 641 (720)
Q Consensus 577 ~-~----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~----------~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~ 641 (720)
. . +-.-+..++.|++|.|.+|. +.......+ ....+=..|..+.|++|.+..-+ -..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g-------a~~ 176 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG-------ATA 176 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc-------HHH
Confidence 5 2 22237778999999999862 222221111 12233345677778888764322 223
Q ss_pred cHHHhcCCCCCceeEEEecchh--hHHHHhhhhhhhhhccccccccccCCCccc---c-ccccccCCcceeeecCCC
Q 038398 642 LVEELMGMKHLMVLTITLKSWQ--ALKELLISQELQRSTQSLFLRCFNDSKSLD---I-FCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 642 ~~~~l~~l~~L~~L~~~~~~~~--~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~---~-~~l~~l~~L~~L~l~~c~ 712 (720)
....+...+.|+.+.+..|.+. ...-+......+++|+.|+|.. |-.+.-. + ..++.+++|+.|++++|-
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc
Confidence 3455667788999999988763 3344556667788999999997 3222111 1 246778899999999986
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=0.00011 Score=66.15 Aligned_cols=88 Identities=27% Similarity=0.127 Sum_probs=50.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
..+.|+|++|+||||+|+.++.... .....++++..+........... ....... ............+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998872 22234566655543322222111 0011100 022233333444455554
Q ss_pred cCc-EEEEEecccccc
Q 038398 228 KKK-FLLLLDDIWERV 242 (720)
Q Consensus 228 ~k~-~LlVlDdv~~~~ 242 (720)
..+ .++++|+++...
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 444 899999998643
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0008 Score=69.50 Aligned_cols=94 Identities=9% Similarity=0.112 Sum_probs=57.4
Q ss_pred CcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChh-Hh-hhhccCceeeccCCChhhHHHHHHHHhccCccCC
Q 038398 229 KKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLE-IC-GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDN 304 (720)
Q Consensus 229 k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~ 304 (720)
++-++|+|+++.. .....+...+.....++.+|+||.+.. +. ...+--..+.+.+++.+++.+.+......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~----- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE----- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-----
Confidence 3445577999753 333333333333334667777776543 32 22233457899999999999998765311
Q ss_pred CCChHHHHHHHHHHhCCcchHHHHH
Q 038398 305 HPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 305 ~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
...+.+..++..++|.|+....+
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHH
Confidence 11344667889999999755444
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=0.00016 Score=80.37 Aligned_cols=199 Identities=14% Similarity=0.162 Sum_probs=101.3
Q ss_pred CCCCcCchHHHHHHHHHhcCC-----CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEec---CcCCHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEE-----QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVS---KDLQLEKIQ 196 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~---~~~~~~~~~ 196 (720)
.++++|.++.++++..++... ..+++.|+|++|+||||+++.++.... ++..-|++-. ...+...+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~~ 157 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKVT 157 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhcccccccccc
Confidence 356899999999999998652 335799999999999999999987751 2222232100 000000111
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHH---H----hccCcEEEEEecccccc-----ccccccc-cCCCCCCCcEEEEE
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILR---I----LGKKKFLLLLDDIWERV-----DLTKVGI-PFPDPENKSKIVFT 263 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~---~----l~~k~~LlVlDdv~~~~-----~~~~l~~-~~~~~~~gs~iiiT 263 (720)
..+..++..... .............. . ..+++.+|++|++.+.. .+..+.. .+...+.-.-|+||
T Consensus 158 ~s~~~~~~~~~s--~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~ 235 (637)
T TIGR00602 158 LSLESCFSNFQS--QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFII 235 (637)
T ss_pred hhhhhccccccc--hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEe
Confidence 111222111100 00001111111111 1 13467899999995421 2222222 12122222345555
Q ss_pred cCChh---------Hh-------hhh--ccCceeeccCCChhhHHHHHHHHhccCccCC-CC---ChHHHHHHHHHHhCC
Q 038398 264 THFLE---------IC-------GAL--KAHEFLKVECLGPEDAWRLFRENLRRDVLDN-HP---DIPELARSVAQECAG 321 (720)
Q Consensus 264 tR~~~---------v~-------~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~-~~---~~~~~~~~i~~~c~G 321 (720)
|.+.. .. ... .....+.+++++..+..+.+.+.+....... .. .-.+....|+..++|
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC
Confidence 53211 00 011 1224588999999998888877765432111 11 124567777777777
Q ss_pred -cchHHHHHH
Q 038398 322 -LPLALITIG 330 (720)
Q Consensus 322 -lPLai~~~~ 330 (720)
.--||..+-
T Consensus 316 DiRsAIn~LQ 325 (637)
T TIGR00602 316 DIRSAINSLQ 325 (637)
T ss_pred hHHHHHHHHH
Confidence 566666664
No 170
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.00052 Score=75.42 Aligned_cols=154 Identities=19% Similarity=0.160 Sum_probs=91.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
..+.|+|..|+|||.|++++++.... ...--.++|++. .++..++...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998721 111124566643 4444555444421 11 122333333
Q ss_pred cCcEEEEEecccccc---cc-ccccccCC-CCCCCcEEEEEcCCh---------hHhhhhccCceeeccCCChhhHHHHH
Q 038398 228 KKKFLLLLDDIWERV---DL-TKVGIPFP-DPENKSKIVFTTHFL---------EICGALKAHEFLKVECLGPEDAWRLF 293 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~---~~-~~l~~~~~-~~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 293 (720)
+ .=+|||||+.... .+ +.+...+. ....|..|||||+.. .+...+...-.+.+++.+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 3 3478899996431 12 11211111 112356788888752 12333444567899999999999999
Q ss_pred HHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 294 RENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
.+++....... -+++..-|++.+.+..
T Consensus 456 ~kka~~r~l~l---~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 456 RKKAVQEQLNA---PPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHhcCCCC---CHHHHHHHHHhccCCH
Confidence 98876543222 2567777777776543
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=0.0002 Score=81.85 Aligned_cols=156 Identities=18% Similarity=0.294 Sum_probs=89.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCC---cCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNV---FDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
++++||++++++++..|......-+.++|++|+|||++|+.++.......-. .+..+|.. +...+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 5679999999999999977555566789999999999999998775211111 13344421 11111 10
Q ss_pred hCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccc----------cccccccccCCCCCCCcEEEEEcCChhHhh
Q 038398 203 IGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWER----------VDLTKVGIPFPDPENKSKIVFTTHFLEICG 271 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~ 271 (720)
+.. ...+.+.....+...+ +..+.+|++|+++.. .+...+..++.. ...-++|-+|...+...
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHH
Confidence 000 1123334444444434 346789999999642 111111112211 12344555555443311
Q ss_pred h-------hccCceeeccCCChhhHHHHHHHHh
Q 038398 272 A-------LKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 272 ~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
. ..-...+.++.++.+++.+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123578999999999999998654
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.66 E-value=0.00061 Score=76.48 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=94.7
Q ss_pred CCCcCchHHHHHHHHH---hcCC---------CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRC---LGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+++|.++.++++.+. +... ..+-|.++|++|+|||+||+.++... ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 5678888766665443 3321 24568999999999999999999876 222 2333211
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc----------------ccccccccCC--CCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV----------------DLTKVGIPFP--DPE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~ 255 (720)
.+.. .. ...........+.......+++|+|||++... .+..+...+. ...
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111 00 00011122223333445678999999996421 0111211111 122
Q ss_pred CCcEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc
Q 038398 256 NKSKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL 322 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 322 (720)
.+..||.||........ + .-...+.++..+.++-.++++.++..... ........+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 35566667765443221 1 12357888999999999999888764321 1123456777787773
No 173
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00044 Score=73.64 Aligned_cols=170 Identities=17% Similarity=0.141 Sum_probs=91.8
Q ss_pred CCCcCchHHHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.++=|.++.+.++.+.+.- ...+-|.++|++|+|||.||++++... . +-|+.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch----
Confidence 3456899988888776631 246789999999999999999999987 2 234444432
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc----------------ccccccccCCC---C
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV----------------DLTKVGIPFPD---P 254 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~---~ 254 (720)
+|.... ...+++...+...+.-..-++++++|+++... ++-..+..+.. .
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 111111 12223333333333445579999999986420 11111111111 1
Q ss_pred CCCcEEEE-EcCChhHhhhh---c-cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc
Q 038398 255 ENKSKIVF-TTHFLEICGAL---K-AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL 322 (720)
Q Consensus 255 ~~gs~iii-TtR~~~v~~~~---~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 322 (720)
+.+--||- |+|...+-... + -.+.+.+.--++..-.+++...+.+-....+-++ ++|++..-|.
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCc
Confidence 22322232 44554442222 1 2356777777777777777666543332333333 4444555443
No 174
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=7.3e-05 Score=68.54 Aligned_cols=101 Identities=25% Similarity=0.405 Sum_probs=80.2
Q ss_pred ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCC--ccccCCCCCCEEecc
Q 038398 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLP--SGISTLVSLEHLDLS 572 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~L~ 572 (720)
....++++.|.+..++.++.++.|.+|.+.+|.++.+.+..-..+++|..|.|++|++. .+. ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeec
Confidence 45568899999888888889999999999999999988876667788999999998543 221 235578899999999
Q ss_pred CCCCcccchh----hhcCCCCCEEeccC
Q 038398 573 STAITHLPIE----LQKLVNLKCLNLEY 596 (720)
Q Consensus 573 ~~~i~~lp~~----i~~l~~L~~L~l~~ 596 (720)
+|.+++-+.- +.++++|+.||...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 9988865432 77889999999876
No 175
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.64 E-value=0.0044 Score=72.30 Aligned_cols=45 Identities=31% Similarity=0.397 Sum_probs=37.2
Q ss_pred CCcCchHHHHHHHHHhcC------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.++.+++|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999998886631 133578999999999999999999987
No 176
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=1.5e-05 Score=68.23 Aligned_cols=112 Identities=28% Similarity=0.377 Sum_probs=85.1
Q ss_pred CcccEEEccCCCCcCcch--HHhccCCcccEEEccCCCCCccCCccccCC-CCCCEEeccCCCCcccchhhhcCCCCCEE
Q 038398 516 PHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHLLWKLPSGISTL-VSLEHLDLSSTAITHLPIELQKLVNLKCL 592 (720)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 592 (720)
..+-.++|+.|.+..++. ..+....+|...+|++| ....+|..|... +.+.+|+|++|.|..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 345667888886644432 22456678888999999 667888888755 48999999999999999999999999999
Q ss_pred eccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcc
Q 038398 593 NLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKIN 633 (720)
Q Consensus 593 ~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~ 633 (720)
+++. |.++..|.- +.. |..|...+...|.+.+++..
T Consensus 106 Nl~~-N~l~~~p~v-i~~---L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRF-NPLNAEPRV-IAP---LIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccc-CccccchHH-HHH---HHhHHHhcCCCCccccCcHH
Confidence 9998 677778874 444 55566666667777666654
No 177
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.56 E-value=8.1e-06 Score=82.58 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=110.0
Q ss_pred CCCCcccEEEccCCC-CcC--cchHHhccCCcccEEEccCCCCCcc--CCccccCCCCCCEEeccCC-CCcccc--hhhh
Q 038398 513 PTCPHLLSLFLSDNS-LKM--STDDFFQSMPSLRVFNMSNNHLLWK--LPSGISTLVSLEHLDLSST-AITHLP--IELQ 584 (720)
Q Consensus 513 ~~~~~L~~L~l~~~~-~~~--~~~~~~~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~L~~~-~i~~lp--~~i~ 584 (720)
..|++|.+|++++|. +.+ +. ..+++++.|+.+.+.||.-.+. +-..=+....+-.+++..| .++... ..-.
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQ-ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcch-HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 345666666666652 211 11 2244555555555555421110 0000112223444454455 333221 1123
Q ss_pred cCCCCCEEeccCCcCCCCCchh-hhhccccCceeeccccCCC---cccchh----------cccccCCccccHHHh-cCC
Q 038398 585 KLVNLKCLNLEYMNNLNQFPRL-VISAFSKLQVLRMFDCGGS---KIERLK----------INVLFGGHQFLVEEL-MGM 649 (720)
Q Consensus 585 ~l~~L~~L~l~~~~~l~~lp~~-~~~~l~~L~~L~~~~~~~~---~l~~l~----------~~~~~~~~~~~~~~l-~~l 649 (720)
.+..||.|+.++|+.+...+-. ...+..+|+.|.+..|..- .++.+. .....-.....+..+ .++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 4678888888888654443321 2345678888888887631 111111 111110111122233 367
Q ss_pred CCCceeEEEecchh---hHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCc
Q 038398 650 KHLMVLTITLKSWQ---ALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLE 715 (720)
Q Consensus 650 ~~L~~L~~~~~~~~---~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~ 715 (720)
+.|+.|.++.+... .+..+......+..|..+.|++|+.+..-.+..+..+++|+.+++.+|..+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 89999999855432 2233444445667899999999998887777788899999999999998764
No 178
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=4.8e-05 Score=70.57 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=28.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEE
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIW 183 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 183 (720)
..|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987322356777776
No 179
>PRK08116 hypothetical protein; Validated
Probab=97.55 E-value=0.00017 Score=72.49 Aligned_cols=101 Identities=26% Similarity=0.265 Sum_probs=58.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
..+.++|.+|+|||.||.++++... ..-..++|++ ..+++..+....... ...+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHhc
Confidence 4588999999999999999999972 2233566665 344555555544321 1111 222334444
Q ss_pred cCcEEEEEecccc--ccccc--cccccCC-CCCCCcEEEEEcCC
Q 038398 228 KKKFLLLLDDIWE--RVDLT--KVGIPFP-DPENKSKIVFTTHF 266 (720)
Q Consensus 228 ~k~~LlVlDdv~~--~~~~~--~l~~~~~-~~~~gs~iiiTtR~ 266 (720)
+-. ||||||+.. ..+|. .+...+. ....+..+||||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999943 22332 1211111 12345678999864
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.00058 Score=66.57 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEE
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIW 183 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 183 (720)
..+.++......+..++.+. .+|.+.|++|+|||+||.++..+. -..+.|+.++.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 45678888899999988653 599999999999999999988763 11234554443
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0018 Score=67.40 Aligned_cols=160 Identities=10% Similarity=0.030 Sum_probs=84.1
Q ss_pred CCcC-chHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 127 PTVG-LESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 127 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.++| .+..++.+...+..+++ ....++|+.|+||||+|+.+.+..... ...... .++.....+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4566 77788888888877654 566899999999999999997775211 100000 0000000111100000
Q ss_pred CCC----CccCCCChhHHHHHHHHH-----hccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChh-Hhh-
Q 038398 205 FFD----ESWKNGSLEDKTSDILRI-----LGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLE-ICG- 271 (720)
Q Consensus 205 ~~~----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~-v~~- 271 (720)
.+. ........++..+ +.+. ..+.+-++|+|+++.. .....+...+.....++.+|++|.+.. +..
T Consensus 78 pD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~T 156 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPT 156 (329)
T ss_pred CCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHH
Confidence 000 0000111122222 2222 2244557899998653 223334333433445677777765533 322
Q ss_pred hhccCceeeccCCChhhHHHHHHH
Q 038398 272 ALKAHEFLKVECLGPEDAWRLFRE 295 (720)
Q Consensus 272 ~~~~~~~~~l~~L~~~e~~~Lf~~ 295 (720)
..+-...+++.+++.++..+.+..
T Consensus 157 IrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 157 ILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhhceeeeCCCCCHHHHHHHHHH
Confidence 223346789999999999888865
No 182
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0036 Score=67.79 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=88.5
Q ss_pred CCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 127 PTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++=|.|+.+.++...+.- ...+-|..+|+||+|||++|+++++.. ...| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 334577777776655421 356789999999999999999999987 3333 333221
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc-------------cccccccCCCCCCC-c
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD-------------LTKVGIPFPDPENK-S 258 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~g-s 258 (720)
++.... ..+.+..+..+.+.- +--+++|.||+++...- +..+...+...... .
T Consensus 503 ----EL~sk~--------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ----ELFSKY--------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred ----HHHHHh--------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 111111 011122222332222 23568999998864211 11111122211122 2
Q ss_pred E-EEEEc-CChhHh-hhhc---cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHH
Q 038398 259 K-IVFTT-HFLEIC-GALK---AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELA 312 (720)
Q Consensus 259 ~-iiiTt-R~~~v~-~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~ 312 (720)
. ||-.| |...+- ..+. .+..+.++.-+.+--.++|+.++.+....+.-++++++
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 2 33333 433331 2222 35678888888888999999999776644444555554
No 183
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.00088 Score=63.85 Aligned_cols=170 Identities=15% Similarity=0.213 Sum_probs=98.1
Q ss_pred CCCcCchHHHHH---HHHHhcCC------CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHH
Q 038398 126 EPTVGLESTFDK---VWRCLGEE------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 126 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 196 (720)
++.||.|..+.+ |++.|.+. .++.|..+|++|.|||.+|+++.+.. +-.| +.+.. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka-------t 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA-------T 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech-------H
Confidence 456899887654 56777652 46889999999999999999999987 2222 22211 1
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEeccccc----------ccc----ccccccCC--CCCCCcE
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWER----------VDL----TKVGIPFP--DPENKSK 259 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~----~~l~~~~~--~~~~gs~ 259 (720)
+-|.... .+....+..+.+.-+ .-++++.+|.++.. .+. ..+...+. ..+.|-.
T Consensus 186 ~liGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1111111 122233333333333 36899999988642 111 12211221 1234555
Q ss_pred EEEEcCChhHhhhh---ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 260 IVFTTHFLEICGAL---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 260 iiiTtR~~~v~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
.|-.|.+....... .-...++....+++|-.+++..++..-..... .-.+.++++.+|+.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~----~~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD----ADLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc----cCHHHHHHHhCCCC
Confidence 56666655553321 22356777888899999999988865432222 22566677777654
No 184
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.00023 Score=63.35 Aligned_cols=22 Identities=45% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.43 E-value=0.00029 Score=68.28 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=30.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEe
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVV 186 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 186 (720)
-.++|+|..|+|||||+..+.... ...|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999999887 678888877754
No 186
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.42 E-value=0.0088 Score=62.39 Aligned_cols=203 Identities=15% Similarity=0.222 Sum_probs=124.7
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCChHHHHH-HHHHhhhcCCCCCcCEEEEEEecCc---CCHHHHHHHHHHHhCCC
Q 038398 131 LESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLL-TKINNKLLGAPNVFDVVIWVVVSKD---LQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~i~~~l~~~ 206 (720)
|.+.+++|..||.+..-..|.|.||-|+||+.|+ .++.++. + .+..+.|.+- .+-..+...++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~----~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---K----NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---C----CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5678899999999877789999999999999999 7777664 1 2677776542 33445666666666532
Q ss_pred C-----------------------CccCCCChhHHHHHHHH---Hhc--------------------------cCcEEEE
Q 038398 207 D-----------------------ESWKNGSLEDKTSDILR---ILG--------------------------KKKFLLL 234 (720)
Q Consensus 207 ~-----------------------~~~~~~~~~~~~~~l~~---~l~--------------------------~k~~LlV 234 (720)
. ..+.+....++...+.. .|+ .++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 11122222222221110 111 1256999
Q ss_pred Eeccccccc-----cccc---cccCCCCCCCcEEEEEcCChhHhh----hhc--cCceeeccCCChhhHHHHHHHHhccC
Q 038398 235 LDDIWERVD-----LTKV---GIPFPDPENKSKIVFTTHFLEICG----ALK--AHEFLKVECLGPEDAWRLFRENLRRD 300 (720)
Q Consensus 235 lDdv~~~~~-----~~~l---~~~~~~~~~gs~iiiTtR~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~ 300 (720)
+|++..... |+.+ ...+ ...+=..||++|-+..... .+. ..+.+.|.-.+++-|..+...+....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASL-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHH-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 999854321 1111 1111 1224457888887654432 332 23567899999999999999988643
Q ss_pred ccC------------CC-----CChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhH
Q 038398 301 VLD------------NH-----PDIPELARSVAQECAGLPLALITIGRAMACKKTPQE 341 (720)
Q Consensus 301 ~~~------------~~-----~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~ 341 (720)
... .. .....-....+...||=-.=+..+++-++.+.++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 100 00 123344566788889999999999998887655543
No 187
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=6.8e-05 Score=84.77 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=93.5
Q ss_pred CcccEEEccCCC-CcCcch-HHhccCCcccEEEccCCCCC-ccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEE
Q 038398 516 PHLLSLFLSDNS-LKMSTD-DFFQSMPSLRVFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCL 592 (720)
Q Consensus 516 ~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 592 (720)
.+|+.|+++|.. +..-++ ..-..||+|+.|.+++-.+. ..+-.-..++++|..||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 578888988863 222222 22345789999999885443 22334455789999999999999988 789999999999
Q ss_pred eccCCcCCCCCch-hhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhh
Q 038398 593 NLEYMNNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLIS 671 (720)
Q Consensus 593 ~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~ 671 (720)
.+.+ -.+..-.. ..+-.|++|+.|+++.-..+....+ ....+.--..|+.|+.|+.++..... ..+...
T Consensus 201 ~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i--------i~qYlec~~~LpeLrfLDcSgTdi~~-~~le~l 270 (699)
T KOG3665|consen 201 SMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI--------IEQYLECGMVLPELRFLDCSGTDINE-EILEEL 270 (699)
T ss_pred hccC-CCCCchhhHHHHhcccCCCeeeccccccccchHH--------HHHHHHhcccCccccEEecCCcchhH-HHHHHH
Confidence 9876 22332221 1245566677776665443331110 01112222347889999988766643 112222
Q ss_pred hhhhhhccccccc
Q 038398 672 QELQRSTQSLFLR 684 (720)
Q Consensus 672 ~~~~~~L~~L~l~ 684 (720)
....++|+.+..-
T Consensus 271 l~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 271 LNSHPNLQQIAAL 283 (699)
T ss_pred HHhCccHhhhhhh
Confidence 2233455555444
No 188
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.36 E-value=0.0034 Score=72.51 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCCcCchHHHHHHHHHhcC------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.++... ...|- -+..+...+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccch
Confidence 3469999999999988742 234689999999999999999999876 22332 23333333332221111
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc------cccccccCC---------------CCCCCc
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD------LTKVGIPFP---------------DPENKS 258 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~---------------~~~~gs 258 (720)
... ...........+.. .....-+++||+++.... ...+...+. ..-.+.
T Consensus 396 ~~~--------~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTY--------IGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hcc--------CCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 000 11111222222322 222344788999864211 011111110 011233
Q ss_pred EEEEEcCChhHhhh-hccCceeeccCCChhhHHHHHHHHhc
Q 038398 259 KIVFTTHFLEICGA-LKAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 259 ~iiiTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
-+|.|+.+..+... .+-..++++.+++.+|-.++.+++..
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 34445543322111 12235788999999999888877763
No 189
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=0.00017 Score=81.61 Aligned_cols=131 Identities=25% Similarity=0.422 Sum_probs=87.7
Q ss_pred cceeEEEeccccccc--CCC--CCCCCcccEEEccCCCCcCc-chHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 494 RNVRRMSLMKNKIEN--LSE--TPTCPHLLSLFLSDNSLKMS-TDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~--~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
.+|++|++++...-. ++. ..-+|.|++|.+.+-.+..- ......++++|..||+|++++ ..+ ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence 479999998864321 111 14589999999998654222 223367899999999999944 455 68999999999
Q ss_pred EeccCCCCcccc--hhhhcCCCCCEEeccCCcCCCCCch---hhhhccccCceeeccccCCCcc
Q 038398 569 LDLSSTAITHLP--IELQKLVNLKCLNLEYMNNLNQFPR---LVISAFSKLQVLRMFDCGGSKI 627 (720)
Q Consensus 569 L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~~~~~~~~~l 627 (720)
|.+++-.+..-+ ..+.+|++|++||+|.... ..-+. ..+..-..|..|...+|+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcch
Confidence 999887776543 3477899999999998432 22221 1122222355566666766654
No 190
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=4.3e-05 Score=73.97 Aligned_cols=201 Identities=17% Similarity=0.129 Sum_probs=108.2
Q ss_pred ccceeEEEecccccccCCCC----CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC-CccccCCCCCC
Q 038398 493 WRNVRRMSLMKNKIENLSET----PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL-PSGISTLVSLE 567 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~ 567 (720)
++.++.++|.+|.+..++.. .++|+|++|++++|.+..........+.+|++|-|.|+...+.. -..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45678889999988776543 67899999999999765544331135678999999888665443 34456777778
Q ss_pred EEeccCCCCcccc---hhhhcC-CCCCEEeccCCcCC--CCCchhhhhccccCceeeccccCCCcccchhcccccCCccc
Q 038398 568 HLDLSSTAITHLP---IELQKL-VNLKCLNLEYMNNL--NQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQF 641 (720)
Q Consensus 568 ~L~L~~~~i~~lp---~~i~~l-~~L~~L~l~~~~~l--~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~ 641 (720)
.|.++.|.+..+- ..+... +.+.+|...+|... ..+-. ....++++..+.+..|..-. ..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~-l~r~Fpnv~sv~v~e~PlK~-------------~s 215 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNK-LSRIFPNVNSVFVCEGPLKT-------------ES 215 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHh-HHhhcccchheeeecCcccc-------------hh
Confidence 8877777554321 111111 24455555444210 00000 11234444444444432111 11
Q ss_pred cHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccc-----cccccCCcceeee
Q 038398 642 LVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIF-----CLAGLRNLNKLYV 708 (720)
Q Consensus 642 ~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~l~~l~~L~~L~l 708 (720)
.-.....++.+..|.++.+++.++..+.... .+++|+.|.+++.+-...+.-. -++.+++++.|+=
T Consensus 216 ~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 1122333444555566656655555554433 3347777777765544333211 2455666666553
No 191
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0029 Score=66.13 Aligned_cols=134 Identities=21% Similarity=0.196 Sum_probs=83.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC--EEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD--VVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDIL 223 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (720)
....+.|||..|.|||.|++++.+.. ..... .++++ +......++...+.. ......+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 36789999999999999999999998 33333 45554 234444444444421 1233444
Q ss_pred HHhccCcEEEEEecccccc---cc-ccccccCCC-CCCCcEEEEEcCCh---------hHhhhhccCceeeccCCChhhH
Q 038398 224 RILGKKKFLLLLDDIWERV---DL-TKVGIPFPD-PENKSKIVFTTHFL---------EICGALKAHEFLKVECLGPEDA 289 (720)
Q Consensus 224 ~~l~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 289 (720)
+.. .-=++++||++-.. .+ +++...|.. ...|-.||+|++.. .+.+.+...-.+.+.+++.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 444 33388899996421 11 222222211 12344899998542 2234444556899999999999
Q ss_pred HHHHHHHhccCc
Q 038398 290 WRLFRENLRRDV 301 (720)
Q Consensus 290 ~~Lf~~~~~~~~ 301 (720)
...+.+.+....
T Consensus 250 ~aiL~kka~~~~ 261 (408)
T COG0593 250 LAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHhcC
Confidence 999998776554
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.34 E-value=0.00039 Score=65.07 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
.++||-|+.++.+.-...+++.+-+.|.||+|+||||-+..+++... ...+-+.+.-.+.|+...+..+
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVV 95 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHH
Confidence 46799999999998888888899999999999999999999888872 2223345555555555444443
No 193
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.34 E-value=0.0017 Score=59.88 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=72.1
Q ss_pred CchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCC-----------------CcCEEEEEEecCc--
Q 038398 130 GLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPN-----------------VFDVVIWVVVSKD-- 189 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~v~~~-- 189 (720)
|.++.++.+.+.+..+.. ..+.++|+.|+||+|+|..+....-.... ...-+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 667788888888877665 46899999999999999998876621111 1122233322211
Q ss_pred -CCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC
Q 038398 190 -LQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF 266 (720)
Q Consensus 190 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~ 266 (720)
...+++. ++...+.... ..++.=++|+|+++.. .....+...+.....++.+|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 2222222 3333322111 1235668999999863 3344443334344567888888876
Q ss_pred hh-Hh-hhhccCceeeccCCC
Q 038398 267 LE-IC-GALKAHEFLKVECLG 285 (720)
Q Consensus 267 ~~-v~-~~~~~~~~~~l~~L~ 285 (720)
.. +. ...+--..+.+.++|
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 54 22 222223455665553
No 194
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0083 Score=61.49 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCC----------------CCcCEEEEEEecCcCCHHHH
Q 038398 133 STFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAP----------------NVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 133 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~~f~~~~wv~v~~~~~~~~~ 195 (720)
...+.+...+..+++ ..+.+.|+.|+||+++|..++....... .|-| ..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 455667777766654 4688999999999999999887652110 0111 11111000000
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-h
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-L 267 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~ 267 (720)
+.. .......+ .++.+.+.+ .+++-++|+|+++.. ..-..+...+.....++.+|++|.+ .
T Consensus 86 --------~~k--~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 86 --------GDK--LRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred --------ccc--ccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 000 00000111 122222222 235568999998753 2222332233333446666666654 3
Q ss_pred hHhh-hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 268 EICG-ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 268 ~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
.+.. ..+--..+.+.+++.+++.+.+.... .+ .+.+..++..++|.|+....+.
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQG------VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHcC------CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3332 22333578899999999988886531 11 2336678999999998665443
No 195
>PRK07261 topology modulation protein; Provisional
Probab=97.31 E-value=0.00079 Score=62.80 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=42.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhcc
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGK 228 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 228 (720)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58999999999999999998775111123444444211 1223445566666777766
Q ss_pred CcEEEEEecccc
Q 038398 229 KKFLLLLDDIWE 240 (720)
Q Consensus 229 k~~LlVlDdv~~ 240 (720)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 66 67788654
No 196
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.29 E-value=0.0016 Score=67.23 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCE-EEEEEecC-cCCHHHHHHHHHHHhCCCCCcc
Q 038398 134 TFDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDV-VIWVVVSK-DLQLEKIQEKIGRRIGFFDESW 210 (720)
Q Consensus 134 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~ 210 (720)
...++++.+.. +.-..+.|+|++|+|||||++.+.+... .++-+. ++|+.+.. ..++.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34457777754 3346779999999999999999988762 223343 46766665 4577888888887665432110
Q ss_pred CCCC---hhHHHHHHHHHh--ccCcEEEEEecccc
Q 038398 211 KNGS---LEDKTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 211 ~~~~---~~~~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
.... .......+.+++ .+++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1000 111111222222 47899999999853
No 197
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.29 E-value=0.0014 Score=71.09 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=90.3
Q ss_pred CCCcCchHHHHHHHHHh---cC-------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 126 EPTVGLESTFDKVWRCL---GE-------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
+++.|.+..++.+.... .. ...+-|.++|++|+|||.+|+.+++.. .-.| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH-------
Confidence 34568877666655421 11 235678999999999999999999987 2222 1222111
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHH-hccCcEEEEEeccccccc----c----------ccccccCCCCCCCcEE
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRI-LGKKKFLLLLDDIWERVD----L----------TKVGIPFPDPENKSKI 260 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~----~----------~~l~~~~~~~~~gs~i 260 (720)
+.... ...+ +.....+.+. -...+++|++|+++.... . ..+...+.....+--|
T Consensus 295 ---l~~~~-------vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 ---LFGGI-------VGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ---hcccc-------cChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11000 1111 1222222222 234789999999974211 0 0011111112223345
Q ss_pred EEEcCChhH-h----hhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 261 VFTTHFLEI-C----GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 261 iiTtR~~~v-~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
|.||.+... - ..-.-...+.++..+.++-.++|..+..+....... ..-...+++.+.|..
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 556654432 1 111234678899999999999999887653211100 112456666776653
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0028 Score=67.73 Aligned_cols=152 Identities=18% Similarity=0.287 Sum_probs=87.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
...-|.+||++|+|||-||++|++.. +-. |++|... +++ ... ....+..+..+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~N-----FisVKGP----ELl----NkY--------VGESErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GAN-----FISVKGP----ELL----NKY--------VGESERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCc-----eEeecCH----HHH----HHH--------hhhHHHHHHHHHHH
Confidence 45678899999999999999999987 334 3444332 111 111 01122333333333
Q ss_pred hc-cCcEEEEEecccccc-------c------cccccccCC--CCCCCcEEEEEcCChhHh-hhh----ccCceeeccCC
Q 038398 226 LG-KKKFLLLLDDIWERV-------D------LTKVGIPFP--DPENKSKIVFTTHFLEIC-GAL----KAHEFLKVECL 284 (720)
Q Consensus 226 l~-~k~~LlVlDdv~~~~-------~------~~~l~~~~~--~~~~gs~iiiTtR~~~v~-~~~----~~~~~~~l~~L 284 (720)
-+ .-+++|.||+++... . ...+...+. ....|--||-.|..+++. ..+ .-++...++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 33 478999999987521 1 111222221 123455566666444442 111 22456778888
Q ss_pred ChhhHHHHHHHHhc--cCccCCCCChHHHHHHHHHHhCCcc
Q 038398 285 GPEDAWRLFRENLR--RDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 285 ~~~e~~~Lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
+.+|-.++++.... +.....+.++.+++.. .+|.|.-
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 89999999998887 3333445566666653 3555654
No 199
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.014 Score=59.97 Aligned_cols=177 Identities=7% Similarity=0.016 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCC----
Q 038398 133 STFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFD---- 207 (720)
Q Consensus 133 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---- 207 (720)
...+.+.+.+..+. ...+.+.|+.|+||+++|+.++....... ... ...++.-..-+.+...-..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQG-------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34556777776655 35777999999999999999887662111 000 001111111111111100000
Q ss_pred C-ccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh-hHhhh-hccCc
Q 038398 208 E-SWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL-EICGA-LKAHE 277 (720)
Q Consensus 208 ~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~~-~~~~~ 277 (720)
+ .......++. +.+.+.+ .+++-++|+|+++.. .....+...+.....++.+|++|.+. .+..- .+--.
T Consensus 81 p~~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0 0001112222 2222222 245568889999753 23333333333344556666666554 34322 23346
Q ss_pred eeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 278 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
.+.+.++++++..+.+....... ...+...++.++|.|+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 78999999999999888754211 123566788999999633
No 200
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.00044 Score=63.57 Aligned_cols=124 Identities=22% Similarity=0.241 Sum_probs=78.4
Q ss_pred eEEEecccccccCCCCC-CCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 497 RRMSLMKNKIENLSETP-TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
+.+++.+.++..+...+ -..+.-.+++++|.+..+.. |..++.|.+|.|++|++...-|.--.-+++|..|.|.+|+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 34555555544333321 23456678888887766554 7778888899998887665555444456778888898888
Q ss_pred Ccccch--hhhcCCCCCEEeccCCcCCCCCch---hhhhccccCceeeccccC
Q 038398 576 ITHLPI--ELQKLVNLKCLNLEYMNNLNQFPR---LVISAFSKLQVLRMFDCG 623 (720)
Q Consensus 576 i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~~~~~~ 623 (720)
|.++-+ .+..+++|++|.+-+| ..+.-+. -++-.+++|+.|+..+..
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 876522 2566788888888773 3333221 135566677777666543
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.21 E-value=0.0051 Score=63.46 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=28.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEe
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVV 186 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 186 (720)
..+.++|++|+|||.||.++++... ... ..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 7799999999999999999999872 222 35667654
No 202
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0021 Score=69.33 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=103.6
Q ss_pred CCCCcCchHHHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.+++||.+..+..|...+..+.. ......|+-|+||||+|+.++...-.... .....++--...+.|-..-
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcCC
Confidence 35679999999999999977653 45678899999999999998876521110 0011112112222222220
Q ss_pred CCCC---CccCCCChhHHHHHHHHHh-----ccCcEEEEEecccc--ccccccccccCCCCCCCcEEEE-EcCChhH-hh
Q 038398 204 GFFD---ESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWE--RVDLTKVGIPFPDPENKSKIVF-TTHFLEI-CG 271 (720)
Q Consensus 204 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~iii-TtR~~~v-~~ 271 (720)
..+. +.-+... -+-.+.|.+.. .++.=+.|+|+|.- ...|..+..-+...-...+.|+ ||-...+ ..
T Consensus 87 ~~DviEiDaASn~g-VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 87 LIDVIEIDAASNTG-VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred cccchhhhhhhccC-hHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 0000 0001111 11222233322 23445899999974 3455555444433333444454 4444444 23
Q ss_pred hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc
Q 038398 272 ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL 322 (720)
Q Consensus 272 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 322 (720)
..+....|.++.++.++-...+...+...... ..++....|++..+|.
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~---~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN---IEEDALSLIARAAEGS 213 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCc---cCHHHHHHHHHHcCCC
Confidence 33445789999999999999998887654422 2244556666666663
No 203
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.00021 Score=68.59 Aligned_cols=88 Identities=28% Similarity=0.357 Sum_probs=44.0
Q ss_pred hccCCcccEEEccCC--CCCccCCccccCCCCCCEEeccCCCCcc---cchhhhcCCCCCEEeccCCcCCCCCc---hhh
Q 038398 536 FQSMPSLRVFNMSNN--HLLWKLPSGISTLVSLEHLDLSSTAITH---LPIELQKLVNLKCLNLEYMNNLNQFP---RLV 607 (720)
Q Consensus 536 ~~~l~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~l~~~~~l~~lp---~~~ 607 (720)
|..|++|++|.++.| +....++-....+++|++|++++|+|+. ++ ....+.+|..|++.+|...+ +- ..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~-l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTN-LDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccc-cccHHHHH
Confidence 334455555555555 3334444334444666666666665542 21 14455566666666653322 21 223
Q ss_pred hhccccCceeeccccCCC
Q 038398 608 ISAFSKLQVLRMFDCGGS 625 (720)
Q Consensus 608 ~~~l~~L~~L~~~~~~~~ 625 (720)
+.-+++|..|+-.++..+
T Consensus 139 f~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred HHHhhhhccccccccCCc
Confidence 445566666665555444
No 204
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0026 Score=69.30 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=90.3
Q ss_pred CCCcCchHHHHHHHHHhcC------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
++-+|.++.+++|++++.= -+-.++..+||+|+|||++|+.++.... +.+| -++|+.-.+..+|-.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf----RfSvGG~tDvAeIkG-- 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF----RFSVGGMTDVAEIKG-- 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE----EEeccccccHHhhcc--
Confidence 4568999999999998832 2457999999999999999999999872 2333 345566555555421
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhc---cCcEEEEEecccccc---------ccccccc---------cCCC-CCCC
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILG---KKKFLLLLDDIWERV---------DLTKVGI---------PFPD-PENK 257 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~---------~~~~l~~---------~~~~-~~~g 257 (720)
. ...-...+..++.+.|+ ...-|+.||+|+... .+.++.. .+.+ .--=
T Consensus 483 ------H----RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 483 ------H----RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ------c----ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 1 11112222233334443 345688899986421 1111111 1100 0113
Q ss_pred cEEEEEcCChhH----hhhhccCceeeccCCChhhHHHHHHHHhc
Q 038398 258 SKIVFTTHFLEI----CGALKAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 258 s~iiiTtR~~~v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
|||++...-..+ ....+..+.+++.+...+|-.++-.++..
T Consensus 553 SkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 666653322222 11123346889999999998887777653
No 205
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0064 Score=63.97 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=92.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
....+.+.|++|+|||+||..++... .|..+--++- +++ ...++......+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSp------e~m---------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISP------EDM---------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeCh------HHc---------------cCccHHHHHHHHHHH
Confidence 45677889999999999999998653 5654433321 110 112223333344433
Q ss_pred ----hccCcEEEEEeccccccccccccccCCC-------------CCCCcEE--EEEcCChhHhhhhcc----Cceeecc
Q 038398 226 ----LGKKKFLLLLDDIWERVDLTKVGIPFPD-------------PENKSKI--VFTTHFLEICGALKA----HEFLKVE 282 (720)
Q Consensus 226 ----l~~k~~LlVlDdv~~~~~~~~l~~~~~~-------------~~~gs~i--iiTtR~~~v~~~~~~----~~~~~l~ 282 (720)
.+..--.||+||+....+|..+++.|.. ...|.|. +-||....+...|+- ...|+++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3445679999999888787776654421 1234454 446666677777653 3568889
Q ss_pred CCCh-hhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 038398 283 CLGP-EDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAM 333 (720)
Q Consensus 283 ~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 333 (720)
.++. ++..+.++..-. -.+.+.+.++.+...+| +-.+|+.+-.++
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 8887 777777765421 12334456666666666 333444444443
No 206
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.18 E-value=0.011 Score=61.85 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 132 ESTFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 132 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+...+.+.+.+.+ +...+|+|.|.-|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667777754 457899999999999999999999888
No 207
>PRK08181 transposase; Validated
Probab=97.18 E-value=0.00053 Score=68.43 Aligned_cols=78 Identities=26% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHH
Q 038398 140 RCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKT 219 (720)
Q Consensus 140 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 219 (720)
+|+. ....+.++|++|+|||.||..+.+... ...-.++|+. ..++...+..... ......
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHH--
Confidence 4554 335689999999999999999998762 2223456654 3445555543321 111222
Q ss_pred HHHHHHhccCcEEEEEecccc
Q 038398 220 SDILRILGKKKFLLLLDDIWE 240 (720)
Q Consensus 220 ~~l~~~l~~k~~LlVlDdv~~ 240 (720)
..+.+. +.=||||||+..
T Consensus 161 --~l~~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLAY 178 (269)
T ss_pred --HHHHHh-cCCEEEEecccc
Confidence 222222 344999999953
No 208
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.16 E-value=4.2e-05 Score=77.57 Aligned_cols=192 Identities=18% Similarity=0.116 Sum_probs=99.0
Q ss_pred CCCCcccEEEccCC-CCcCcchH-HhccCCcccEEEccCCCCCcc--CCccccCCCCCCEEeccCCC-Cc--ccchhhhc
Q 038398 513 PTCPHLLSLFLSDN-SLKMSTDD-FFQSMPSLRVFNMSNNHLLWK--LPSGISTLVSLEHLDLSSTA-IT--HLPIELQK 585 (720)
Q Consensus 513 ~~~~~L~~L~l~~~-~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~L~~~~-i~--~lp~~i~~ 585 (720)
..|++|+.|++..| .++...-. ...++++|.+|+++.|..+.. +-.-..++..|+.+.+++|. +. .+-..-+.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 34566666666654 33332211 234566666666666643322 11112334445555555542 11 11111122
Q ss_pred CCCCCEEeccCCcCCCCCchh-hhhccccCceeeccccCCCcccchhcccccCCccccHHHhc-CCCCCceeEEEecchh
Q 038398 586 LVNLKCLNLEYMNNLNQFPRL-VISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM-GMKHLMVLTITLKSWQ 663 (720)
Q Consensus 586 l~~L~~L~l~~~~~l~~lp~~-~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~-~l~~L~~L~~~~~~~~ 663 (720)
...+..+++..|+.++..... +-..+..|+.|...+|+.. +......|+ ++.+|+.|.+..+..-
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-------------~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-------------TDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC-------------chHHHHHHhcCCCceEEEeccccchh
Confidence 333445555566444443311 1123455666666665442 333444454 5688999988865431
Q ss_pred hHHHHhhhhhhhhhccccccccccCCCccccccc-cccCCcceeeecCCCCCccc
Q 038398 664 ALKELLISQELQRSTQSLFLRCFNDSKSLDIFCL-AGLRNLNKLYVAGCKHLEDS 717 (720)
Q Consensus 664 ~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l-~~l~~L~~L~l~~c~~l~~i 717 (720)
+-..+.......+.|+.+++..|.......+..+ .+++.|+.|.|+.|..+.+-
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 1112222233446899999998876554433333 56899999999999877653
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.15 E-value=0.0082 Score=60.34 Aligned_cols=56 Identities=23% Similarity=0.286 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 132 ESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 132 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
.+.++++..++..+ .-|.+.|++|+|||++|+.+.... .. ..+++++....+..++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 34455566666543 456789999999999999998754 22 2345555555444444
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.01 Score=66.86 Aligned_cols=104 Identities=20% Similarity=0.348 Sum_probs=64.2
Q ss_pred CCCcCchHHHHHHHHHhcC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 196 (720)
...+|.+..++.+.+.+.. ....+....||.|||||-||++++.... +.=+..+-++.|.-.. -
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~E----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYME----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHH----H
Confidence 4579999999999888842 2356777899999999999999988772 1113334443333211 1
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcE-EEEEecccc
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKF-LLLLDDIWE 240 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 240 (720)
..+.+-+|.+ +.+...+. ...|-+..+.++| +|.||++..
T Consensus 564 HsVSrLIGaP-PGYVGyee---GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 564 HSVSRLIGAP-PGYVGYEE---GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHhCCC-CCCceecc---ccchhHhhhcCCCeEEEechhhh
Confidence 2222333332 22111111 3456667777887 888999975
No 211
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.018 Score=58.99 Aligned_cols=176 Identities=12% Similarity=0.064 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCC-----
Q 038398 133 STFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFF----- 206 (720)
Q Consensus 133 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~----- 206 (720)
...+++.+.+..++ ...+.+.|+.|+||+++|+.+....-..... + ..++.-..-+.+...-..+
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~--------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-S--------EACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-C--------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34566667666555 4578899999999999999987765211100 0 0000001111111100000
Q ss_pred -CCccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh-hHh-hhhccC
Q 038398 207 -DESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL-EIC-GALKAH 276 (720)
Q Consensus 207 -~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~-~v~-~~~~~~ 276 (720)
.........++. +.+.+.+ .+++-++|+|+++.. .....+...+.....++.+|++|.+. .+. +..+--
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000011122222 2233333 234558888998753 23333433333334556666665543 343 222334
Q ss_pred ceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 277 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
..+.+.+++.+++.+.+.... .+ .+..+++.++|.|+....+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 678999999999998886531 11 1456788999999876544
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.13 E-value=0.0072 Score=70.34 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=96.2
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
.++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH---
Confidence 4457888887777665421 234568899999999999999999986 2232 222211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc--------------cccccccCCC--CC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD--------------LTKVGIPFPD--PE 255 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~--~~ 255 (720)
+ ++... .. ..+.....+.+.. ...+.+|+||+++.... ...+...+.. ..
T Consensus 522 -~----l~~~~-------vG-ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -E----ILSKW-------VG-ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -H----Hhhcc-------cC-cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1 11111 11 1122333333322 35679999999864210 0111111111 12
Q ss_pred CCcEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHH
Q 038398 256 NKSKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITI 329 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 329 (720)
.+..||.||........ . .-...+.++..+.++-.++|+.+..........+ ...+++.+.|.- -.|..+
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYTGADIEAV 664 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCCHHHHHHH
Confidence 34445566654443221 1 2346788999999999999987765433222222 455667787754 334443
No 213
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.11 E-value=0.0028 Score=73.45 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=36.8
Q ss_pred CCCcCchHHHHHHHHHhcC--------C-CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--------E-QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.+..++.+...+.. + ...++.++|++|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 3468999999988887742 1 23468899999999999999998876
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.10 E-value=0.014 Score=63.85 Aligned_cols=198 Identities=17% Similarity=0.102 Sum_probs=116.7
Q ss_pred CCcCchHHHHHHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHHhhhcC--CCC---CcCEEEEEEecCcCCHHHHH
Q 038398 127 PTVGLESTFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLG--APN---VFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~---~f~~~~wv~v~~~~~~~~~~ 196 (720)
.+-+||.+..+|.+++.. +..+.+.|.|-+|+|||..+..|.+.... .++ .|+ .+.|+.-.-....++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 446899999999888742 23458999999999999999999986521 112 333 2334434445688999
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHHHhc-----cCcEEEEEeccccccc--cccccccCCC-CCCCcEEEEEcC--C
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILRILG-----KKKFLLLLDDIWERVD--LTKVGIPFPD-PENKSKIVFTTH--F 266 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~iiiTtR--~ 266 (720)
..|..++... ........+.+..++. .+.+++++|+++.... -+-+...|.| ..++||++|.+= .
T Consensus 476 ~~I~~~lsg~-----~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 476 EKIWEALSGE-----RVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHhcccC-----cccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 9999998753 3445556666666664 3578999999864211 0111111222 345777666441 1
Q ss_pred hhH---------hhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 038398 267 LEI---------CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGR 331 (720)
Q Consensus 267 ~~v---------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 331 (720)
... +..+ ....+...+.+.++-.+....+..+...-.+...+=++++|+.-.|-.-.|+.+.-+
T Consensus 551 mdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 111 1111 123466777888888887777765443122222333455555555555555554433
No 215
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.10 E-value=0.0061 Score=60.69 Aligned_cols=170 Identities=19% Similarity=0.173 Sum_probs=101.5
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH-HHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE-KIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~ 200 (720)
.+++|-.++..++-.++.. ++..-|.|+||.|.|||+|.-....+..+..++| +-|...+....+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 4678999999998888854 4556788999999999999988887753333333 444444433322 2345555
Q ss_pred HHhCCCCCc--cCCCChhHHHHHHHHHhcc------CcEEEEEeccccccc------cccccccC-CCCCCCcEEEEEcC
Q 038398 201 RRIGFFDES--WKNGSLEDKTSDILRILGK------KKFLLLLDDIWERVD------LTKVGIPF-PDPENKSKIVFTTH 265 (720)
Q Consensus 201 ~~l~~~~~~--~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~l~~~~-~~~~~gs~iiiTtR 265 (720)
+++...... ....+..+....+.+.|+. -++++|+|+++--.. +-.+...- ....+-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 554322111 1234455666677777754 368999998764211 11111111 12334566778998
Q ss_pred ChhH-------hhhhccCceeeccCCChhhHHHHHHHHhc
Q 038398 266 FLEI-------CGALKAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 266 ~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
-... -.......++-++.++-++...++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 6433 22222233566778888888888887764
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.09 E-value=0.024 Score=66.62 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=37.1
Q ss_pred CCCcCchHHHHHHHHHhcC--------C-CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--------E-QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.+..++.|...+.. + ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999888887742 1 22578899999999999999998775
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.0018 Score=61.64 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCcc-CCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDESW-KNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 224 (720)
+++|.++|+.|+||||.+.+++.... ..-..+..++.... ....+.++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 46899999999999988888887762 22346777776432 345677888888888653211 12234444443333
Q ss_pred HhccCc-EEEEEecc
Q 038398 225 ILGKKK-FLLLLDDI 238 (720)
Q Consensus 225 ~l~~k~-~LlVlDdv 238 (720)
.+..++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 344333 47777865
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.07 E-value=0.00061 Score=69.92 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=39.8
Q ss_pred CCcCchHHHHHHHHHhcC------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|.++.++++++++.. ...++++++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999843 245789999999999999999999887
No 219
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00031 Score=67.44 Aligned_cols=105 Identities=27% Similarity=0.351 Sum_probs=77.2
Q ss_pred cccceeEEEecccccccCCCCCCCCcccEEEccCC--CCcCcchHHhccCCcccEEEccCCCCCc--cCCccccCCCCCC
Q 038398 492 NWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDN--SLKMSTDDFFQSMPSLRVFNMSNNHLLW--KLPSGISTLVSLE 567 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~ 567 (720)
.+.++..+++.+..+..+..++.+++|+.|.++.| ....-.......+++|++|++++|++.. .++ .+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchh
Confidence 44567788888888888878889999999999999 4333223335677999999999995431 222 345677888
Q ss_pred EEeccCCCCcccch----hhhcCCCCCEEeccCC
Q 038398 568 HLDLSSTAITHLPI----ELQKLVNLKCLNLEYM 597 (720)
Q Consensus 568 ~L~L~~~~i~~lp~----~i~~l~~L~~L~l~~~ 597 (720)
.|++.+|..+.+-. -|.-+++|.+||-..+
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999998776632 2666889999987664
No 220
>PRK06526 transposase; Provisional
Probab=97.07 E-value=0.00053 Score=68.10 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+...+.++|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 221
>PRK12377 putative replication protein; Provisional
Probab=97.05 E-value=0.0033 Score=61.97 Aligned_cols=74 Identities=31% Similarity=0.297 Sum_probs=45.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
+...+.++|++|+|||+||.++++... .....++|+++ .++...+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999882 23334566654 3444444443311 01111 22223
Q ss_pred hccCcEEEEEeccc
Q 038398 226 LGKKKFLLLLDDIW 239 (720)
Q Consensus 226 l~~k~~LlVlDdv~ 239 (720)
+ .+.-||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345699999994
No 222
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.05 E-value=0.00048 Score=60.25 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.02 E-value=0.0034 Score=73.03 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=91.4
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.+..+++|.+.+.- ...+.|.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH-----
Confidence 3467999999888776521 234678899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc-------------cccccccCCC-CCCCc
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD-------------LTKVGIPFPD-PENKS 258 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~gs 258 (720)
.+. ... ...........+.......+.+|+||+++.... ...+...+.. ...+.
T Consensus 247 -~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 -EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred -HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 110 000 011111222222233345678999999864210 1111111111 12233
Q ss_pred EEEE-EcCChh-Hhhhh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch
Q 038398 259 KIVF-TTHFLE-ICGAL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL 324 (720)
Q Consensus 259 ~iii-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 324 (720)
.++| ||.... +.... .-...+.+...+.++-.+++........... ......+++.+.|..-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCH
Confidence 4444 444322 21111 1234677888888888888886553322111 1225677888888653
No 224
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0037 Score=65.76 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=35.8
Q ss_pred CCcCchH---HHHHHHHHhcCC--------C-ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLES---TFDKVWRCLGEE--------Q-VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.-|-|+ ++++|+++|.+. . ++-|.++|++|.|||-||++++-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3457665 677889999762 2 4678999999999999999998876
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.99 E-value=0.0027 Score=62.36 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
-.++.|+|++|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 46899999999999999999987762 234678899887 5555444
No 226
>PRK04296 thymidine kinase; Provisional
Probab=96.97 E-value=0.00073 Score=64.26 Aligned_cols=113 Identities=17% Similarity=0.054 Sum_probs=61.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
.++.|+|+.|.||||+|..+..+. ..+-..++++. ..++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 477899999999999999998887 22233344442 1112122233445555543221112233444444444 33
Q ss_pred cCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChh
Q 038398 228 KKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 228 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35559999998532 2222222111 245788999988743
No 227
>PRK06921 hypothetical protein; Provisional
Probab=96.97 E-value=0.0007 Score=67.86 Aligned_cols=39 Identities=33% Similarity=0.397 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEe
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVV 186 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v 186 (720)
....+.++|.+|+|||.||.++++... ...-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 356789999999999999999999872 221345667654
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.031 Score=58.05 Aligned_cols=178 Identities=8% Similarity=0.009 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCC----
Q 038398 133 STFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFD---- 207 (720)
Q Consensus 133 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~---- 207 (720)
..-+++...+..++ ...+.+.|+.|+||+++|..++....... .-+. ..++.-.--+.+...-..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~-~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ-PQGH-------KSCGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC-CCCC-------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 34566777776655 45778999999999999999877652110 0000 00000011111110000000
Q ss_pred Ccc--CCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-hhHhhh-hccC
Q 038398 208 ESW--KNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-LEICGA-LKAH 276 (720)
Q Consensus 208 ~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~~-~~~~ 276 (720)
+.. .....++. +.+.+.+ .+++-++|+|+++.. ..-..+...+.....++.+|++|.+ ..+..- .+--
T Consensus 81 p~~~~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000 01112222 2222322 245668999998753 2333333333333456666666654 334322 2333
Q ss_pred ceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHH
Q 038398 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALI 327 (720)
Q Consensus 277 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 327 (720)
..+.+.+++.+++.+.+....+. -.+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~--------~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTM--------SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCC--------CHHHHHHHHHHcCCCHHHHH
Confidence 56889999999999888654211 12346788999999996443
No 229
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0099 Score=66.49 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=99.7
Q ss_pred CCCcCchHH---HHHHHHHhcCC---------CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLEST---FDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~---~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.++.|-|+. +++++++|... -++-|.++|++|+|||-||++++-.. . +=|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----
Confidence 455687764 55566677541 35678899999999999999999876 2 345555543
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc-----------------cccccccCCCCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD-----------------LTKVGIPFPDPE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~l~~~~~~~~ 255 (720)
++...+... ....++.+...- .+.++++.+|+++...- +..+...+....
T Consensus 379 ----EFvE~~~g~--------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ----EFVEMFVGV--------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ----HHHHHhccc--------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 111221110 012223333322 24678999998764211 122222222111
Q ss_pred C--CcEEEEEcCChhHhhh--h---ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 256 N--KSKIVFTTHFLEICGA--L---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 256 ~--gs~iiiTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
. +--++-+|+..++... + .-+..+.++.-+...-.++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2 2223335554444322 1 234678888889999999999988654422 34456666 888888877543
No 230
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.042 Score=56.95 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=54.6
Q ss_pred cCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCC-hhHhhh-hccCceeeccCCChhhHHHHHHHHhccCccC
Q 038398 228 KKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHF-LEICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLD 303 (720)
Q Consensus 228 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 303 (720)
+++-++|+|+++.. .....+...+.....++.+|++|.+ ..+..- .+--..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 34558889998753 3344443334344456655555544 444322 2333678999999999999987641 1
Q ss_pred CCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 304 NHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 304 ~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
. . ...++..++|.|.....+
T Consensus 206 ~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 233577889999755443
No 231
>PRK09183 transposase/IS protein; Provisional
Probab=96.92 E-value=0.0007 Score=67.69 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+.|+|++|+|||+||..++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998765
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.89 E-value=0.0013 Score=67.09 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+..++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999997
No 233
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.88 E-value=0.0028 Score=61.51 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=36.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQE 197 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 197 (720)
-.++.|+|++|+|||++|.+++... ...-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 4789999999999999999988776 23346889999875 55555444
No 234
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.035 Score=53.12 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=92.0
Q ss_pred ccccCCCCCC---CcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEE
Q 038398 118 PAVDQRPCEP---TVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVV 181 (720)
Q Consensus 118 ~~~~~~~~~~---~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 181 (720)
..++++|.+. +=|.++.++++++++.- ..+.-|..+|++|.|||-+|++.+... ...|-
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL-- 234 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL-- 234 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH--
Confidence 3456666554 45899999999998731 245678899999999999999987765 22221
Q ss_pred EEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEeccccc----cc------------c
Q 038398 182 IWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWER----VD------------L 244 (720)
Q Consensus 182 ~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----~~------------~ 244 (720)
++..--+.|... .+...+.......-+ ..+.+|.+|.++.. .+ .
T Consensus 235 ------------KLAgPQLVQMfI-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTM 295 (424)
T KOG0652|consen 235 ------------KLAGPQLVQMFI-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTM 295 (424)
T ss_pred ------------HhcchHHHhhhh-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHH
Confidence 111111111111 112223333333333 35789999987531 11 0
Q ss_pred ccccccCCCC--CCCcEEEEEcCChhHh-----hhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHH
Q 038398 245 TKVGIPFPDP--ENKSKIVFTTHFLEIC-----GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARS 314 (720)
Q Consensus 245 ~~l~~~~~~~--~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~ 314 (720)
.++...+..+ ...-|||..|..-.+. .+-.-...++.+..+++.-..++.-+..+.....+..++++++.
T Consensus 296 LELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 296 LELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred HHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 1111222222 2345778777544442 22222345565555554444555555555444555566666553
No 235
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.87 E-value=0.0011 Score=59.68 Aligned_cols=42 Identities=33% Similarity=0.352 Sum_probs=31.4
Q ss_pred EEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHH
Q 038398 150 IGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQE 197 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 197 (720)
|.++|++|+|||+||+.+++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6799999999999999999887 11 344567777777766543
No 236
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.03 Score=60.59 Aligned_cols=88 Identities=25% Similarity=0.295 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
..+|+|+|++|+||||++..+.... ........+..++... .......++.....++.... ...+.......+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-ER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-HH
Confidence 4799999999999999999988765 1122223455555422 11222333333333433221 112223333333 33
Q ss_pred hccCcEEEEEeccc
Q 038398 226 LGKKKFLLLLDDIW 239 (720)
Q Consensus 226 l~~k~~LlVlDdv~ 239 (720)
+.+ .=+|++|...
T Consensus 426 l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 LRD-YKLVLIDTAG 438 (559)
T ss_pred hcc-CCEEEecCCC
Confidence 433 4478888764
No 237
>PRK04132 replication factor C small subunit; Provisional
Probab=96.85 E-value=0.017 Score=66.50 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=93.8
Q ss_pred Ec--CCCChHHHHHHHHHhhhcCCCCCc-CEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccC
Q 038398 153 YG--MGGVGKTTLLTKINNKLLGAPNVF-DVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKK 229 (720)
Q Consensus 153 ~G--~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 229 (720)
.| |.++||||+|..++++.. .+.+ ..++-++.+...+...+.+.+-....... . -..+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~---~--------------~~~~ 630 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTKP---I--------------GGAS 630 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC---c--------------CCCC
Confidence 36 789999999999998862 1222 25677777766565544433322221110 0 0124
Q ss_pred cEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh-hHhhh-hccCceeeccCCChhhHHHHHHHHhccCccCCC
Q 038398 230 KFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL-EICGA-LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNH 305 (720)
Q Consensus 230 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~ 305 (720)
.-++|+|+++.. .....+...+......+++|++|.+. .+... .+....+++.+++.++..+.+...+......
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-- 708 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-- 708 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--
Confidence 579999999864 23444433333333456666666543 33222 2234688999999999988887766532211
Q ss_pred CChHHHHHHHHHHhCCcch-HHHHHH
Q 038398 306 PDIPELARSVAQECAGLPL-ALITIG 330 (720)
Q Consensus 306 ~~~~~~~~~i~~~c~GlPL-ai~~~~ 330 (720)
--++....|++.|+|-+- |+..+-
T Consensus 709 -i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 709 -LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 125678899999999764 444443
No 238
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.85 E-value=0.0017 Score=62.34 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=106.2
Q ss_pred cccceeEEEecccccccC------CCCCCCCcccEEEccCCCC---cC-cc------hHHhccCCcccEEEccCCCCCcc
Q 038398 492 NWRNVRRMSLMKNKIENL------SETPTCPHLLSLFLSDNSL---KM-ST------DDFFQSMPSLRVFNMSNNHLLWK 555 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~---~~-~~------~~~~~~l~~L~~L~L~~~~~~~~ 555 (720)
.+..+..++|++|.|..- ..+.+-.+|+..+++.--. .. ++ ...+-+||+|+..+||.|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356778888888877421 1123456677766665311 11 11 11245778888888888866555
Q ss_pred CCcc----ccCCCCCCEEeccCCCCcccchh--------------hhcCCCCCEEeccCCcCCCCCchhh----hhcccc
Q 038398 556 LPSG----ISTLVSLEHLDLSSTAITHLPIE--------------LQKLVNLKCLNLEYMNNLNQFPRLV----ISAFSK 613 (720)
Q Consensus 556 lp~~----i~~l~~L~~L~L~~~~i~~lp~~--------------i~~l~~L~~L~l~~~~~l~~lp~~~----~~~l~~ 613 (720)
.|.. |+.-..|.+|.+++|.+..+-.. ...-+.|+...... |.+..-|... +..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcC
Confidence 5544 34556788888888876643211 22346777777766 4455444321 111124
Q ss_pred CceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhh--hhhhhcccccccccc
Q 038398 614 LQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQ--ELQRSTQSLFLRCFN 687 (720)
Q Consensus 614 L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~--~~~~~L~~L~l~~~~ 687 (720)
|+.+.+.. |.|.+- +........+..+.+|+.|++..|.++......... ..-+.|+.|.+..|-
T Consensus 187 lk~vki~q---NgIrpe------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 187 LKEVKIQQ---NGIRPE------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred ceeEEeee---cCcCcc------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 44444443 443311 113455667778899999999988876655443332 222457888888873
No 239
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.002 Score=75.40 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=37.5
Q ss_pred CCCcCchHHHHHHHHHhcC---------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.+..++.+.+.+.. ....++.++|++|+|||.||+.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999888731 134578899999999999999998776
No 240
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.036 Score=61.28 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCCcCchHHHHHHHHHhcC---------C---CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLGE---------E---QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
+++=|.++.+.+|.+-+.- . ..+-|.++|++|.|||-||++|+-.. ..-|++|...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 5566889999999887742 1 24578899999999999999999887 2345666543
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccc
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWE 240 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 240 (720)
++++ .- ...+ ++..+.+.+.- ..++++|.||++++
T Consensus 740 ELLN----MY-------VGqS-E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLN----MY-------VGQS-EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHH----HH-------hcch-HHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111 11 1112 22333333333 35899999999876
No 241
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.83 E-value=0.0043 Score=73.11 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=43.5
Q ss_pred CCCcCchHHHHHHHHHhcC------C---CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 126 EPTVGLESTFDKVWRCLGE------E---QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
..++|.+..++.+...+.. + ...++.++|++|+|||++|+.+.... ...-...+.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 4579999999999888843 1 24578899999999999999999876 22223344555543
No 242
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.82 E-value=0.011 Score=58.18 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCC----CcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC----c---cCCCCh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPN----VFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE----S---WKNGSL 215 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 215 (720)
-.++.|+|++|+|||+||.+++.... ... .=..++|++....++...+.+ +......... . ....+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCH
Confidence 47999999999999999999876641 111 115788998877766655433 3333221100 0 012344
Q ss_pred hHHHHHHHHHhc----cCcEEEEEeccc
Q 038398 216 EDKTSDILRILG----KKKFLLLLDDIW 239 (720)
Q Consensus 216 ~~~~~~l~~~l~----~k~~LlVlDdv~ 239 (720)
++....+.+... .+.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 455555554432 244588889874
No 243
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.022 Score=55.71 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=92.4
Q ss_pred CCCcCchHHHHHHHHHhc----------CC--CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLG----------EE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
+++-|.|...+.+.+... .. .-+-|.++|++|.||+.||++|+-.. .. -|++||...-+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSSDLvS 204 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSSDLVS 204 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehHHHHH
Confidence 345688888888877652 11 35789999999999999999999876 12 234454431111
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEeccccc---------cccccccc----cCC---CCCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWER---------VDLTKVGI----PFP---DPEN 256 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~l~~----~~~---~~~~ 256 (720)
..++ ..+.++..|.+.-+ +++-+|.+|+++.. +....+.. .+. ....
T Consensus 205 -------KWmG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 205 -------KWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred -------HHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 1111 12445555555444 58899999998642 11111211 111 2233
Q ss_pred CcEEEEEcCChhHhhhh---ccCceeeccCCChhhHH-HHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 257 KSKIVFTTHFLEICGAL---KAHEFLKVECLGPEDAW-RLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 257 gs~iiiTtR~~~v~~~~---~~~~~~~l~~L~~~e~~-~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
|.-|+-.|..+-+.... .-...+.+ ||.+..|. .+|+-+++... +.-.+.-.+++.++..|..
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 44555566655554332 11222333 44444444 45666665432 2223444666777776653
No 244
>PRK06696 uridine kinase; Validated
Probab=96.78 E-value=0.002 Score=63.20 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHhc---CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 130 GLESTFDKVWRCLG---EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 130 Gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|++.+++|.+.+. .+...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46677788877774 3567899999999999999999999887
No 245
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.0083 Score=59.02 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=51.2
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccC
Q 038398 134 TFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWK 211 (720)
Q Consensus 134 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~ 211 (720)
.+..+.++... .+...+.++|.+|+|||+||.++++... ..-..+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444432 2335788999999999999999999872 2223556664 34455554443321 1
Q ss_pred CCChhHHHHHHHHHhccCcEEEEEecccc
Q 038398 212 NGSLEDKTSDILRILGKKKFLLLLDDIWE 240 (720)
Q Consensus 212 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (720)
.... ..+.+.+. +.=+|||||+..
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCC
Confidence 1111 22333454 344888899964
No 246
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.017 Score=54.83 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=90.6
Q ss_pred Cc-CchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 128 TV-GLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 128 ~v-Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
+| |.+..+++|.+.+.- .++.-+.++|++|.|||-||++|+++. .+.|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 45 456666666655421 356778899999999999999999886 2445666653
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEecccccc----------c------cccccccCC--CC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWERV----------D------LTKVGIPFP--DP 254 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~------~~~l~~~~~--~~ 254 (720)
++.++.. .. .......+.-..+ .-+.+|.+|++++.. + ..++...+. ..
T Consensus 216 elvqk~i----ge--------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ELVQKYI----GE--------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHHh----hh--------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 2221111 10 0122222222222 357788888886521 0 011111121 22
Q ss_pred CCCcEEEEEcCChhHhhh-----hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHH
Q 038398 255 ENKSKIVFTTHFLEICGA-----LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVA 316 (720)
Q Consensus 255 ~~gs~iiiTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 316 (720)
.++-+||.+|..-++... -..+..++.++.+++.-.++++-+........-.++..+|.++.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 456788887755444322 12345677888887777777776654433222334555555443
No 247
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.012 Score=66.25 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=88.6
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-----CEEEEEEecCcCCHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-----DVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~v~~~~~~~~~~~~i 199 (720)
.++.+||+++++++++-|......--.++|.+|+|||++|.-++.+.. .+.- +..++- . ++
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-L----D~------- 234 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-L----DL------- 234 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-e----cH-------
Confidence 356899999999999999764333345689999999999988887762 1111 111111 0 11
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEecccccc--------ccc--cccccCCCCCCC-cEEEEEcCCh
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWERV--------DLT--KVGIPFPDPENK-SKIVFTTHFL 267 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~--~l~~~~~~~~~g-s~iiiTtR~~ 267 (720)
..-.... . -..+.++....+.+.++ ..+++|++|.+.... ..+ .+..| .-..| -++|-.|...
T Consensus 235 g~LvAGa--k-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP--aLARGeL~~IGATT~~ 309 (786)
T COG0542 235 GSLVAGA--K-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP--ALARGELRCIGATTLD 309 (786)
T ss_pred HHHhccc--c-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH--HHhcCCeEEEEeccHH
Confidence 1111100 0 23455666666555554 358999999986521 111 12111 12223 3445444433
Q ss_pred hHh-------hhhccCceeeccCCChhhHHHHHHHHh
Q 038398 268 EIC-------GALKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 268 ~v~-------~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
+.- ....-.+.+.+...+.+++..++.-..
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 331 112234678899999999999987654
No 248
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.71 E-value=0.0019 Score=61.84 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=59.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
++|.|+|+.|+||||++..+.... .......++. +...... ..... ..+ ..... ...+.....+.++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~E~--~~~~~-~~~-i~q~~-vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPIEF--VHESK-RSL-INQRE-VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCccc--cccCc-cce-eeecc-cCCCccCHHHHHHHHhc
Confidence 578999999999999999887776 2222333332 1111110 00000 000 00000 11122345566777787
Q ss_pred cCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhH
Q 038398 228 KKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEI 269 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 269 (720)
..+=++++|++.+.+........ ...|..++.|+....+
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 77889999999776554432211 1235567777765544
No 249
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.71 E-value=0.0039 Score=63.68 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (720)
.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+.+++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34688999999999999999987765 2233468899877666543 34444433211 1233455556555
Q ss_pred HHHhcc-CcEEEEEeccc
Q 038398 223 LRILGK-KKFLLLLDDIW 239 (720)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~ 239 (720)
...++. ..-++|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 555544 56699999874
No 250
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.71 E-value=0.0062 Score=60.30 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCC----CcCEEEEEEecCcCCHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPN----VFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~ 196 (720)
-.++.|+|++|+|||+||.+++... .... ....++|++....++...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 4789999999999999999997553 1111 13589999987776655443
No 251
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.71 E-value=0.0041 Score=63.50 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (720)
.-+++-|+|++|+||||||.+++.... ..-..++||+....++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 347899999999999999999877662 223467888776655542 34455443221 1233455556656
Q ss_pred HHHhc-cCcEEEEEecccc
Q 038398 223 LRILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~~ 240 (720)
...++ +..-++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 3566999998753
No 252
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0089 Score=62.47 Aligned_cols=122 Identities=14% Similarity=0.128 Sum_probs=71.4
Q ss_pred CCcCchHHHHHHHHHhcC-CCce-EEEEEcCCCChHHHHHHHHHhhhcCCCC------------------CcCEEEEEEe
Q 038398 127 PTVGLESTFDKVWRCLGE-EQVG-IIGLYGMGGVGKTTLLTKINNKLLGAPN------------------VFDVVIWVVV 186 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~v 186 (720)
.++|-+....++..+..+ ++.. .+.++|++|+||||+|..+.+....... ..+.+..++-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 357778888888888864 3344 4999999999999999999988721110 1233444444
Q ss_pred cCcCC---HHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEE
Q 038398 187 SKDLQ---LEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIV 261 (720)
Q Consensus 187 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ii 261 (720)
+.... ..+..+++........ ..++.-++++|+++... .-..+...+......+.+|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 43333 2333333333332211 02466799999997532 2223332333344567777
Q ss_pred EEcCC
Q 038398 262 FTTHF 266 (720)
Q Consensus 262 iTtR~ 266 (720)
++|..
T Consensus 144 l~~n~ 148 (325)
T COG0470 144 LITND 148 (325)
T ss_pred EEcCC
Confidence 77763
No 253
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.69 E-value=0.0048 Score=61.24 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-CEEEEEEecCc-CCHHHHHHHHHHHhCCCCC----ccCCCCh-h--
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-DVVIWVVVSKD-LQLEKIQEKIGRRIGFFDE----SWKNGSL-E-- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~-- 216 (720)
.-+.++|.|.+|+|||||++.+++.. +.+| +.++++-++.. ....++.+.+...-..... ....... .
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 34689999999999999999999987 3344 45666767654 3455666666543211110 0011111 1
Q ss_pred ---HHHHHHHHHh--c-cCcEEEEEecccc
Q 038398 217 ---DKTSDILRIL--G-KKKFLLLLDDIWE 240 (720)
Q Consensus 217 ---~~~~~l~~~l--~-~k~~LlVlDdv~~ 240 (720)
...-.+.+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122344555 3 7899999999843
No 254
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.69 E-value=0.013 Score=56.81 Aligned_cols=210 Identities=14% Similarity=0.206 Sum_probs=118.5
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCC---CCCcCEEEEEEecCc----------C--
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA---PNVFDVVIWVVVSKD----------L-- 190 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~----------~-- 190 (720)
....++++...++......++.+...++|++|.||-|.+..+.+....+ +-.-+..-|.+-+.. +
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 4467888888888887776778999999999999999888877765221 112233444432221 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcE-EEEEeccccc--cccccccccCCCCCCCc
Q 038398 191 ---------QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKF-LLLLDDIWER--VDLTKVGIPFPDPENKS 258 (720)
Q Consensus 191 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs 258 (720)
.-+.+.++++.......+ + +.-..+.| ++|+-.+++. +.-..++.-+......+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q-------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ-------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc-------------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 112334444444332110 0 00112344 5666666531 11112221122234567
Q ss_pred EEEEEcCChh-Hhhhh-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHhc
Q 038398 259 KIVFTTHFLE-ICGAL-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP-LALITIGRAMAC 335 (720)
Q Consensus 259 ~iiiTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l~~ 335 (720)
|+|+...+.+ +.... +.--.++++..+++|-...+++.+.......+ ++++.+|+++++|.- -|+-.+-..-..
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 7777543321 11111 11235789999999999999998877663333 789999999999864 444433322111
Q ss_pred C---------CChhHHHHHHHHHhcc
Q 038398 336 K---------KTPQEWHYAIQVLRRS 352 (720)
Q Consensus 336 ~---------~~~~~w~~~l~~l~~~ 352 (720)
+ -...+|+-++.++...
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 1 2456899887765443
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.0094 Score=59.29 Aligned_cols=89 Identities=25% Similarity=0.248 Sum_probs=53.3
Q ss_pred CchHHHHHHH---HHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCC
Q 038398 130 GLESTFDKVW---RCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 130 Gr~~~~~~l~---~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 206 (720)
++.+.+..+. +++. +..-+.++|++|+|||.||.++.++. ...--.+.|+++ .++..++......
T Consensus 87 ~~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l---~~~g~sv~f~~~------~el~~~Lk~~~~~- 154 (254)
T COG1484 87 IDKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNEL---LKAGISVLFITA------PDLLSKLKAAFDE- 154 (254)
T ss_pred hhHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHH---HHcCCeEEEEEH------HHHHHHHHHHHhc-
Confidence 3444444443 3443 55678999999999999999999998 222235566643 4566666655532
Q ss_pred CCccCCCChhHHHHHHHHHhccCcEEEEEecccc
Q 038398 207 DESWKNGSLEDKTSDILRILGKKKFLLLLDDIWE 240 (720)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (720)
.....++...+. +-=||||||+..
T Consensus 155 ---------~~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 155 ---------GRLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred ---------CchHHHHHHHhh-cCCEEEEecccC
Confidence 111222333222 233899999854
No 256
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.67 E-value=0.0021 Score=69.47 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=40.3
Q ss_pred CCCcCchHHHHHHHHHh------cCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCL------GEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++|.++.+++|++.| .+..-+++.++||+|+||||||+.+.+-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 45799999999999988 23456899999999999999999999887
No 257
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.0079 Score=57.06 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCCCCCcCchHHHHHHHHHh----cCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 123 RPCEPTVGLESTFDKVWRCL----GEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.....++|.|...+.+++-- ..-...-|.+||.-|.|||+|++++.+..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 33456799998888876643 33355678999999999999999999987
No 258
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.63 E-value=0.015 Score=56.88 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL 190 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 190 (720)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 34789999999999999999998776 2223467888765444
No 259
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0002 Score=68.88 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=27.3
Q ss_pred cceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCC
Q 038398 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNN 550 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 550 (720)
.+++.|++.+|.+.++.-...++.|.+|.|+=|.++.+.+ |..|++|+.|+|..|
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN 73 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc
Confidence 3445555555555544434444555555555555444433 444555555555544
No 260
>PRK09354 recA recombinase A; Provisional
Probab=96.61 E-value=0.0055 Score=63.06 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (720)
.-+++-|+|++|+||||||.+++... ...-..++||.....++.. .+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34788999999999999999987765 2233578899887766652 34555443221 1233455666656
Q ss_pred HHHhcc-CcEEEEEecccc
Q 038398 223 LRILGK-KKFLLLLDDIWE 240 (720)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~~ 240 (720)
...++. ..-++|+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 555544 566999998753
No 261
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.60 E-value=0.0077 Score=70.80 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCcCchHHHHHHHHHhcC--------C-CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--------E-QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.+..++.|...+.. + ....+.++|+.|+|||+||+.+.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999999887742 1 23466789999999999999999876
No 262
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.26 Score=47.19 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=83.4
Q ss_pred CcCchHHHHHHHHHhc-------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHH
Q 038398 128 TVGLESTFDKVWRCLG-------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEK 194 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 194 (720)
+=|.+-.+++|.+... -+.++-|.++|++|+|||.||++|+++. ...| +.|...
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~f-----irvvgs----- 223 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAF-----IRVVGS----- 223 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhe-----eeeccH-----
Confidence 3466766666665542 1467889999999999999999999987 3444 332211
Q ss_pred HHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc----------c------cccccccCC--CCC
Q 038398 195 IQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV----------D------LTKVGIPFP--DPE 255 (720)
Q Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~l~~~~~--~~~ 255 (720)
++.++.-... ......+.+.- .+-+.+|.+|+++... + +-++...+. +..
T Consensus 224 ---efvqkylgeg--------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 224 ---EFVQKYLGEG--------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred ---HHHHHHhccC--------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 1111111111 12222233322 3467889999886421 0 111211222 233
Q ss_pred CCcEEEEEcCChhHh-----hhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHH
Q 038398 256 NKSKIVFTTHFLEIC-----GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPEL 311 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~ 311 (720)
.+.|+|..|...+.. ..-.-...++.+.-+..+-.-.|.....+.......+++++
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~ 353 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDL 353 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHH
Confidence 456788777433321 11112345666644555555557666555443444444443
No 263
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0045 Score=58.22 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEE
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWV 184 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 184 (720)
...+|.+.|++|+||||+|+.++... ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 44689999999999999999999987 3445555555
No 264
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.029 Score=62.32 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=83.6
Q ss_pred CcCchHHHHHHHHHhc---C----------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHH
Q 038398 128 TVGLESTFDKVWRCLG---E----------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEK 194 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~---~----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 194 (720)
..|.+...+.+.+.+. . ...+.+.++|++|.|||.||+++++.. ...|-.+. .. +
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~-----~~-~--- 311 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVK-----GS-E--- 311 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEee-----CH-H---
Confidence 3566666655544431 1 245689999999999999999999965 33443222 11 0
Q ss_pred HHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccccc-------------cccccCC--CCCCCcE
Q 038398 195 IQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLT-------------KVGIPFP--DPENKSK 259 (720)
Q Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-------------~l~~~~~--~~~~gs~ 259 (720)
+.... -..............-+..++.|.+|+++....+. .+...+. ....+..
T Consensus 312 ----l~sk~-------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 312 ----LLSKW-------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ----Hhccc-------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 11100 11112222223333335688999999996532211 1111221 1222333
Q ss_pred EEEEcCChhHhhh---h--ccCceeeccCCChhhHHHHHHHHhccCc
Q 038398 260 IVFTTHFLEICGA---L--KAHEFLKVECLGPEDAWRLFRENLRRDV 301 (720)
Q Consensus 260 iiiTtR~~~v~~~---~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~ 301 (720)
||-||........ . .-...+.+++.+.++..+.|+.+.....
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 4555543333221 1 2245788999999999999999987433
No 265
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.055 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+.++|+.|+||||+|+.+....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999988775
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.55 E-value=0.013 Score=53.94 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL 190 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~ 190 (720)
++.|+|++|+||||++..+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36899999999999999998876 2234567788776554
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.54 E-value=0.0091 Score=61.11 Aligned_cols=115 Identities=23% Similarity=0.240 Sum_probs=64.2
Q ss_pred CchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 130 GLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
++....+...+++.. ....-+.++|+.|+|||.||.++++... ...+ .+.|+.+ ..+...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555555542 1346799999999999999999999982 2223 3556654 3455555554421
Q ss_pred CCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--ccccc--ccccC-CCC-CCCcEEEEEcC
Q 038398 206 FDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTK--VGIPF-PDP-ENKSKIVFTTH 265 (720)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~~~-~~~-~~gs~iiiTtR 265 (720)
.+..+ ..+.+. +.=||||||+... .+|.. +...+ ... ..+..+|+||.
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11122 222232 4558999999632 33432 22211 111 23456777775
No 268
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.26 Score=51.73 Aligned_cols=149 Identities=21% Similarity=0.198 Sum_probs=78.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
|--.++||||.||||++.++++.. .|+. +=+..+...+- .+ |+..|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v~~n-----------------------~d----Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEVKLD-----------------------SD----LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccccCc-----------------------HH----HHHHHH
Confidence 567899999999999999999987 3432 11222111111 11 222222
Q ss_pred --cCcEEEEEecccccccccc--------------------ccccCC--CCCC-CcEE-EEEcCChhHhh--hh---ccC
Q 038398 228 --KKKFLLLLDDIWERVDLTK--------------------VGIPFP--DPEN-KSKI-VFTTHFLEICG--AL---KAH 276 (720)
Q Consensus 228 --~k~~LlVlDdv~~~~~~~~--------------------l~~~~~--~~~~-gs~i-iiTtR~~~v~~--~~---~~~ 276 (720)
..+-+||+.|++...++.. +...+. +... +=|| |.||...+-.. .+ ..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 2455777787764321100 111111 1112 2345 55766543321 11 123
Q ss_pred ceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHH-HHhc
Q 038398 277 EFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGR-AMAC 335 (720)
Q Consensus 277 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~-~l~~ 335 (720)
..+.+.-=+++.-..|+..+.+... ++ .++.+|.+...|.-+.=..+++ +|..
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 4677888899999999999886532 22 3455555555555444444444 4444
No 269
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0058 Score=66.57 Aligned_cols=160 Identities=18% Similarity=0.119 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC--CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL--QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
...|.|.|+.|+|||+||+++++.. . +...-++.+|+++.-. ...++++.+-..+ .+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf-------------------se 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF-------------------SE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchhHHHHHHHHHHHH-------------------HH
Confidence 4678999999999999999999998 3 5555677777776432 2333333332222 23
Q ss_pred HhccCcEEEEEecccccc--------ccccc---cccCC------CCCCCcE--EEEEcCChhHh-hhh----ccCceee
Q 038398 225 ILGKKKFLLLLDDIWERV--------DLTKV---GIPFP------DPENKSK--IVFTTHFLEIC-GAL----KAHEFLK 280 (720)
Q Consensus 225 ~l~~k~~LlVlDdv~~~~--------~~~~l---~~~~~------~~~~gs~--iiiTtR~~~v~-~~~----~~~~~~~ 280 (720)
.+.-.+-+|||||++... +|... ...+. ....+.+ +|.|.....-. ... -......
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 445578899999986321 11110 00000 1223444 33333322211 111 1224567
Q ss_pred ccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHH
Q 038398 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIG 330 (720)
Q Consensus 281 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 330 (720)
++.+...+-.++++....... .....+...-+..+|+|. |.-+.++-
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 888888777777665543322 111123334488888884 55555443
No 270
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.53 E-value=0.0099 Score=53.95 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=60.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC---cCCHHHHHHHHHHHhCC---CC-CccCCCChhH---
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK---DLQLEKIQEKIGRRIGF---FD-ESWKNGSLED--- 217 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~~~l~~---~~-~~~~~~~~~~--- 217 (720)
..|-|++..|.||||+|...+-+.. .+=-.+.++..-+ ..+-..+++.+- .+.. .. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 5788999999999999998877762 2222455544333 233333333331 0100 00 0001111222
Q ss_pred ----HHHHHHHHhccC-cEEEEEeccccc-----cccccccccCCCCCCCcEEEEEcCChh
Q 038398 218 ----KTSDILRILGKK-KFLLLLDDIWER-----VDLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 218 ----~~~~l~~~l~~k-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
..+..++.+... -=|+|||++-.. .+.+.+...+.....+.-+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 222333444443 449999998543 222233333333445678999999854
No 271
>PRK06547 hypothetical protein; Provisional
Probab=96.51 E-value=0.0037 Score=58.16 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 136 DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 136 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344445556678899999999999999999998875
No 272
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.51 E-value=0.015 Score=66.27 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=87.2
Q ss_pred CcCchHHHHHHHH---HhcC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 128 TVGLESTFDKVWR---CLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 128 ~vGr~~~~~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
+.|.+...+++.+ ++.. .-.+-|.++|++|+|||++|+.++... ...| +.++.. .+
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f-----~~is~~----~~ 221 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF-----FTISGS----DF 221 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE-----EEEehH----Hh
Confidence 4576665555443 3322 113458999999999999999998876 2222 222211 11
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----------------cccccccCCC--CCCC
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----------------LTKVGIPFPD--PENK 257 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~g 257 (720)
.. .. ...........+...-...+++|++|+++.... +..+...+.. ...+
T Consensus 222 ~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 222 VE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 10 00 001111222222233344688999999865310 1111111111 1234
Q ss_pred cEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc
Q 038398 258 SKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL 322 (720)
Q Consensus 258 s~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 322 (720)
.-+|.||...+.... . .....+.++..+.++-.+++..+..........+ ...+++.+.|.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 455557765554221 1 1246778888888888888888775433222222 23456666653
No 273
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.50 E-value=0.0091 Score=55.71 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCC--CC---CcC--EEEEEEecCcCCHHHHHHHHHHHhCCCCC---c-cCCCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA--PN---VFD--VVIWVVVSKDLQLEKIQEKIGRRIGFFDE---S-WKNGS 214 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~v~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~ 214 (720)
.-.+++|+|+.|+|||||.+.+..+..++ .. .|. .+.|+ .+ .+.+..++.... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999986432111 00 111 13332 22 345566654321 0 01111
Q ss_pred -hhHHHHHHHHHhccC--cEEEEEeccccccc---cccccccCCC-CCCCcEEEEEcCChhHhhhhccCceeec
Q 038398 215 -LEDKTSDILRILGKK--KFLLLLDDIWERVD---LTKVGIPFPD-PENKSKIVFTTHFLEICGALKAHEFLKV 281 (720)
Q Consensus 215 -~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iiiTtR~~~v~~~~~~~~~~~l 281 (720)
-+...-.+...+-.+ +-++++|+.-...+ ...+...+.. ...|..||++|.+...... ..+.+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122223344455556 77889998754322 1112111111 1246778888888766532 4445544
No 274
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.49 E-value=0.012 Score=58.62 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcC---CCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLG---APNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
-.+.=|+|++|+|||.|+.+++-...- ..+.=..++|++....+....+.+ |++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccc
Confidence 368889999999999999888654311 112234799999999998887754 555544
No 275
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0063 Score=66.59 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL 226 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (720)
-++..++|++|+||||||..++++. .| .++=|+.|+..+...+-..|...+.... .+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~l 382 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------VL 382 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------cc
Confidence 4789999999999999999998875 22 4677888888888887777777664321 22
Q ss_pred --ccCcEEEEEeccccc
Q 038398 227 --GKKKFLLLLDDIWER 241 (720)
Q Consensus 227 --~~k~~LlVlDdv~~~ 241 (720)
.+++.-||+|+++..
T Consensus 383 ~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccCCCcceEEEecccCC
Confidence 257888999998753
No 276
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0062 Score=69.91 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=36.9
Q ss_pred CCcCchHHHHHHHHHhcC---------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+||.++.++.|...+.. .....+.++|++|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999988888742 124578899999999999999998876
No 277
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.46 E-value=0.016 Score=53.10 Aligned_cols=125 Identities=19% Similarity=0.170 Sum_probs=69.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEe---------------------cCcC--------------
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVV---------------------SKDL-------------- 190 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v---------------------~~~~-------------- 190 (720)
.-..+.|+|++|.||||+.+.+|.... .-.+.+|+.- -|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 346899999999999999999998752 1122333320 0111
Q ss_pred -------CHHHHHH---HHHHHhCCCCCc----cCCCChhHHHHHHHHHhccCcEEEEEecc----ccccccccccccCC
Q 038398 191 -------QLEKIQE---KIGRRIGFFDES----WKNGSLEDKTSDILRILGKKKFLLLLDDI----WERVDLTKVGIPFP 252 (720)
Q Consensus 191 -------~~~~~~~---~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~l~~~~~ 252 (720)
...++.+ +.+...++.... .+-+.-++..-.|.+.+-+++-+|+=|+- +....|+-+...-.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1222322 233333332210 01222333444566666778888888853 33333432211111
Q ss_pred CCCCCcEEEEEcCChhHhhhhc
Q 038398 253 DPENKSKIVFTTHFLEICGALK 274 (720)
Q Consensus 253 ~~~~gs~iiiTtR~~~v~~~~~ 274 (720)
-+..|..||++|.+..+...+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhcc
Confidence 2456899999999998876653
No 278
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0086 Score=56.84 Aligned_cols=79 Identities=20% Similarity=0.182 Sum_probs=43.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
.+-+|||.|.+|+||||+|+.++..+ ....-.+ ++...-+. ..-............+....-+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999988 3232111 11100000 000001111111122222345666777788888
Q ss_pred hccCc
Q 038398 226 LGKKK 230 (720)
Q Consensus 226 l~~k~ 230 (720)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 279
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0067 Score=59.95 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCC--CCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAP--NVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
.++|.++||+|.|||+|++++++.. .++ +.+....-+.++. ..++.+-... ...-...+.++|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5899999999999999999999987 332 3333333343322 1222222111 23445667777777
Q ss_pred HhccCc--EEEEEecccc
Q 038398 225 ILGKKK--FLLLLDDIWE 240 (720)
Q Consensus 225 ~l~~k~--~LlVlDdv~~ 240 (720)
.+.++. +.+.+|+|.+
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 777765 3556898864
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.39 E-value=0.015 Score=54.68 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC--c----------c-CC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE--S----------W-KN 212 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--~----------~-~~ 212 (720)
.-.+++|.|+.|+|||||++.+..-.. .-.+.+++.-. ++......+...++.... . . .-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 346899999999999999999987641 11233333211 111111111111111000 0 0 01
Q ss_pred CChhHHHHHHHHHhccCcEEEEEecccccccc---ccccccCCCCCCCcEEEEEcCChhHhhhhccCceeec
Q 038398 213 GSLEDKTSDILRILGKKKFLLLLDDIWERVDL---TKVGIPFPDPENKSKIVFTTHFLEICGALKAHEFLKV 281 (720)
Q Consensus 213 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 281 (720)
+.-+...-.+...+-.++-+++||+..+.-|. +.+...+.....+..||++|.+...... ..+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11122233345556677889999987643221 1111111111236778888887766542 3444444
No 281
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.038 Score=56.09 Aligned_cols=50 Identities=30% Similarity=0.275 Sum_probs=37.0
Q ss_pred CCCcCchHHHHHHHHHhcC--------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc
Q 038398 126 EPTVGLESTFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF 178 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f 178 (720)
.++-|.+..++++.+...= ....-|..+||+|.|||-||+++..+. ...|
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~f 155 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANF 155 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCc
Confidence 3445777777776665421 245778999999999999999999987 4555
No 282
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.035 Score=56.49 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=31.5
Q ss_pred CcCchHHHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 128 TVGLESTFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.|.++.++-|.++..- ..=+-|..+|++|.|||-||++|+...
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45666655555554321 123568899999999999999999887
No 283
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.36 E-value=0.02 Score=58.76 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCC---CCCcCEEEEEEecCcCCHHHHHHHHHHHhCCC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGA---PNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 206 (720)
-+++-|+|++|+|||+|+.+++-..... ...=..++||+....++...+.+ +++.++..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4688899999999999998876433110 11224789999988888887754 45666543
No 284
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.36 E-value=0.011 Score=63.33 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=38.2
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35799999999998888654 458899999999999999999876
No 285
>PHA00729 NTP-binding motif containing protein
Probab=96.35 E-value=0.0047 Score=59.32 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=28.8
Q ss_pred HHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 137 KVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 137 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555655666789999999999999999999875
No 286
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.34 E-value=0.0037 Score=56.03 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=31.3
Q ss_pred cCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 129 VGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
||....++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5666677777666643 344668899999999999999998876
No 287
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.34 E-value=0.011 Score=55.30 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
...-+.++|++|+|||.||..+.+... ... -.+.|+.+ .+++..+-..- .....++ +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~~------~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFITA------SDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEEH------HHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEeec------Cceeccccccc-------cccchhh----hcCc
Confidence 346799999999999999999988762 222 24566643 44554443221 1112222 2233
Q ss_pred hccCcEEEEEecccc
Q 038398 226 LGKKKFLLLLDDIWE 240 (720)
Q Consensus 226 l~~k~~LlVlDdv~~ 240 (720)
+. +.=||||||+..
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 334788999864
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0048 Score=54.78 Aligned_cols=24 Identities=54% Similarity=0.580 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
--|+|.||+|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999887
No 289
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.28 E-value=0.021 Score=60.03 Aligned_cols=83 Identities=30% Similarity=0.393 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDKTSDIL 223 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 223 (720)
-.++.|.|.+|+|||||+.+++.... ..-..++|++... +..++. .-+..++...+.. ...+.++ +.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e~~le~----I~ 151 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAETNLED----IL 151 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEccCcHHH----HH
Confidence 46899999999999999999987762 2234678887543 233332 2234555432211 1122233 33
Q ss_pred HHhc-cCcEEEEEeccc
Q 038398 224 RILG-KKKFLLLLDDIW 239 (720)
Q Consensus 224 ~~l~-~k~~LlVlDdv~ 239 (720)
+.+. .+.-++|+|.+.
T Consensus 152 ~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 152 ASIEELKPDLVIIDSIQ 168 (372)
T ss_pred HHHHhcCCcEEEEcchH
Confidence 3332 356688888874
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.017 Score=60.25 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
-.+++++|+.|+||||++.++..... .......+.+++... .....+-++...+.++.+.. ...+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHHHHH-HH
Confidence 47999999999999999999988751 111123566665432 22345556666666665432 122222333333 34
Q ss_pred hccCcEEEEEeccc
Q 038398 226 LGKKKFLLLLDDIW 239 (720)
Q Consensus 226 l~~k~~LlVlDdv~ 239 (720)
+.++. ++++|...
T Consensus 213 l~~~D-lVLIDTaG 225 (374)
T PRK14722 213 LRNKH-MVLIDTIG 225 (374)
T ss_pred hcCCC-EEEEcCCC
Confidence 45554 55689874
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.28 E-value=0.027 Score=60.33 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCcc-CCCChhHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDESW-KNGSLEDKTSDIL 223 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 223 (720)
.+.+|.++|++|+||||+|..++.... . ..+ .+..|++... ....+.++.+..+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467899999999999999999988772 2 222 4444544321 223455666677766543211 1122233333333
Q ss_pred HHhccCcEEEEEecc
Q 038398 224 RILGKKKFLLLLDDI 238 (720)
Q Consensus 224 ~~l~~k~~LlVlDdv 238 (720)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 334443 56778876
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.27 E-value=0.019 Score=56.20 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=73.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-----cCCHHHHHHHHHHHhCCCCCc-----cCCCCh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-----DLQLEKIQEKIGRRIGFFDES-----WKNGSL 215 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 215 (720)
.-.+++|+|.+|+||||+++.+..-. ..-.+.+++.-.+ .....+-..+++...+....- ..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 44789999999999999999998654 2222334433211 222344566677776654311 111222
Q ss_pred hHHHHHHHHHhccCcEEEEEeccccccc------cccccccCCCCCCCcEEEEEcCChhHhhhhcc
Q 038398 216 EDKTSDILRILGKKKFLLLLDDIWERVD------LTKVGIPFPDPENKSKIVFTTHFLEICGALKA 275 (720)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~~ 275 (720)
+...-.+.+.|.-++-++|.|+.-+.-+ ...+...+ ....|-..++.|.+-.+...+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhcc
Confidence 2223346667788999999998654322 11221111 22346678888888888766543
No 293
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.017 Score=54.10 Aligned_cols=23 Identities=48% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++.+.|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.25 E-value=0.028 Score=55.66 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
.-.++.|.|++|+|||++|.++.... -..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH
Confidence 45799999999999999999876654 12245788888754 44455554
No 295
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.23 E-value=0.017 Score=57.77 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=27.8
Q ss_pred HHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 139 WRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 139 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++...+..+|.|.|.+|+|||||+..+....
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444678999999999999999999999886
No 296
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.20 E-value=0.0038 Score=59.69 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=44.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcC---EEEEEEecCcCCHHHHHHHHHHHh-CCCCCccCCCChhHHHHHHHH
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFD---VVIWVVVSKDLQLEKIQEKIGRRI-GFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~v~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~l~~ 224 (720)
||+|.|++|+||||+|+.+..... ..... ....+..............-...- ..........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 799999999999999999999882 12222 233443333222222222211110 111111134556667777777
Q ss_pred HhccCcEEE
Q 038398 225 ILGKKKFLL 233 (720)
Q Consensus 225 ~l~~k~~Ll 233 (720)
...++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666666544
No 297
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.20 E-value=0.0038 Score=55.09 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 298
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.16 E-value=0.0099 Score=59.95 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEE
Q 038398 130 GLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVV 181 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 181 (720)
+|..+..--.++|.++.+..|.+.|.+|.|||-||-+..-..-..+..|..+
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 5666666667888889999999999999999988865432221234455533
No 299
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.0041 Score=68.95 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=106.5
Q ss_pred ccceeEEEecccc-ccc--C-CCCCCCCcccEEEccCC-C-CcCcc---hHHhccCCcccEEEccCCCCCcc-CCcccc-
Q 038398 493 WRNVRRMSLMKNK-IEN--L-SETPTCPHLLSLFLSDN-S-LKMST---DDFFQSMPSLRVFNMSNNHLLWK-LPSGIS- 561 (720)
Q Consensus 493 ~~~l~~L~l~~~~-~~~--~-~~~~~~~~L~~L~l~~~-~-~~~~~---~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~- 561 (720)
++.++.+.+.++. +.. + +....+++|+.|.++++ . ....+ ......+++|+.|+++++..+.. .-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4566666666553 221 1 22356788888888763 1 11111 12345667888888888753222 111222
Q ss_pred CCCCCCEEeccCCC-Ccc--cchhhhcCCCCCEEeccCCcCCCC--CchhhhhccccCceeeccccCC-Ccccchhcccc
Q 038398 562 TLVSLEHLDLSSTA-ITH--LPIELQKLVNLKCLNLEYMNNLNQ--FPRLVISAFSKLQVLRMFDCGG-SKIERLKINVL 635 (720)
Q Consensus 562 ~l~~L~~L~L~~~~-i~~--lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~~~~~~~-~~l~~l~~~~~ 635 (720)
.+++|++|.+.+|. ++. +-.....+++|++|++++|..+.. +... ...+++|+.|.+..+.. ..++.......
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 36788888877774 542 223355677788888888765432 2222 34466666666655543 11222221111
Q ss_pred cCCc--cccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcc-ccccccccCCCccccccc-cccCCcceeeecCC
Q 038398 636 FGGH--QFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQ-SLFLRCFNDSKSLDIFCL-AGLRNLNKLYVAGC 711 (720)
Q Consensus 636 ~~~~--~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~-~L~l~~~~~l~~l~~~~l-~~l~~L~~L~l~~c 711 (720)
.... ......+.++++++.+.+...... ... .+.+.+|+.++ ..+... .....|+.|+++.|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~-------------~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGIS-------------DLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhcc-------------CcchHHHhcCCcccc-hHHHHHhccCCccceEecccC
Confidence 1111 223334445555555555433311 111 45566666663 222222 22233788888888
Q ss_pred CCCcc
Q 038398 712 KHLED 716 (720)
Q Consensus 712 ~~l~~ 716 (720)
..+..
T Consensus 412 ~~~t~ 416 (482)
T KOG1947|consen 412 RLVTD 416 (482)
T ss_pred ccccc
Confidence 87653
No 300
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.15 E-value=0.017 Score=50.95 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=45.0
Q ss_pred cccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
+..+++++.+.+.. .+..++. +..+++|+.+.+..+ +..+....|.+++.|+.+.+..+ ....-...+..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-cccccccccccccccc
Confidence 34445566666553 3333322 245556666666554 55555555666666666666542 2222223444566666
Q ss_pred EEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhcccc
Q 038398 568 HLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSK 613 (720)
Q Consensus 568 ~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~ 613 (720)
.+.+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTK 127 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCcccccccc
Confidence 6666543 4444332 4444 666665543 334455444444443
No 301
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.14 E-value=0.036 Score=54.75 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc----------------
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---------------- 209 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---------------- 209 (720)
.-+++.|.|.+|+|||++|.++..... ..=..++|++.... ..++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 357899999999999999999865541 12347888888654 34454443 233321110
Q ss_pred --cCCCChhHHHHHHHHHhcc-CcEEEEEeccc
Q 038398 210 --WKNGSLEDKTSDILRILGK-KKFLLLLDDIW 239 (720)
Q Consensus 210 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 239 (720)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234556666666654 55588899864
No 302
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.14 E-value=0.0044 Score=47.80 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 303
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.043 Score=60.29 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=89.3
Q ss_pred CCCcCchHHHH---HHHHHhcCC---------CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFD---KVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~---~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+.-|.|+.++ ++++.|.+. -++-|..+|++|.|||.||+++.... .+ .| .+.|...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V--PF-----f~iSGS~--- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV--PF-----FSISGSD--- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC--Cc-----eeccchh---
Confidence 34568887655 456666642 24678899999999999999999886 33 22 2222210
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc----------------ccccccccCCCCC--
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV----------------DLTKVGIPFPDPE-- 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~-- 255 (720)
....+ .........+...+..++-++++++|.++... .+..+...+..++
T Consensus 219 -----FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 219 -----FVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -----hhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 00010 00111122223333445568999999886421 1222222222222
Q ss_pred CCcEEEEEcCChhHhhh-----hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch
Q 038398 256 NKSKIVFTTHFLEICGA-----LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL 324 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 324 (720)
.|-.|+..|..++|... -.-+..+.++..+-..-.+.++-++.........++.. |++.+-|.--
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCccc
Confidence 23334444444444321 12234566666666777777776665444333333332 7777766554
No 304
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.13 E-value=0.018 Score=54.32 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=63.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEec--CcCCHHHHH------HHHHHHhCCCCC---cc-CCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVS--KDLQLEKIQ------EKIGRRIGFFDE---SW-KNG 213 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~--~~~~~~~~~------~~i~~~l~~~~~---~~-~~~ 213 (720)
.-.+++|+|+.|+|||||++.++... ....+.+++.-. ...+..... .+++..++.... .. .-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34689999999999999999998754 123344443211 111221211 114455544321 00 111
Q ss_pred ChhHHHHHHHHHhccCcEEEEEeccccccc---cccccccCCC--CCCCcEEEEEcCChhHh
Q 038398 214 SLEDKTSDILRILGKKKFLLLLDDIWERVD---LTKVGIPFPD--PENKSKIVFTTHFLEIC 270 (720)
Q Consensus 214 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~~~~--~~~gs~iiiTtR~~~v~ 270 (720)
.-+...-.+...+-..+-++++|+.-...| ...+...+.. ...+..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222333345556667888999998754322 2222222211 11267788888876654
No 305
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.019 Score=52.62 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++.|.||+|+|||||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999874
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.11 E-value=0.023 Score=57.61 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=47.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
..++|+|+|++|+||||++..++... .....-..+..|+..... .....+......++.+.. ...+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 35799999999999999999988776 111111345666643321 223333444444444331 2223334433333
Q ss_pred HhccCcEEEEEecc
Q 038398 225 ILGKKKFLLLLDDI 238 (720)
Q Consensus 225 ~l~~k~~LlVlDdv 238 (720)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 346777753
No 307
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.10 E-value=0.032 Score=57.50 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcC---CCCCcCEEEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLG---APNVFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
.-.++.|+|.+|+|||||+..++..... ....-..++|++....+....+ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3578999999999999999988754310 1112236799998887777664 334555543
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.10 E-value=0.029 Score=52.09 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCC--cC---EEEEEEecCcCCH--HHHHHHHHHHhCCCCCccCCCChhHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNV--FD---VVIWVVVSKDLQL--EKIQEKIGRRIGFFDESWKNGSLEDK 218 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 218 (720)
.-.+++|+|+.|.|||||++.+........+. ++ .+.++ .+.... ..+.+.+.-. ... .-+.-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 34689999999999999999998764211111 11 12222 222211 1233332210 110 12222333
Q ss_pred HHHHHHHhccCcEEEEEeccccccc---cccccccCCCCCCCcEEEEEcCChhHhhhhccCceeec
Q 038398 219 TSDILRILGKKKFLLLLDDIWERVD---LTKVGIPFPDPENKSKIVFTTHFLEICGALKAHEFLKV 281 (720)
Q Consensus 219 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l 281 (720)
.-.+...+-.++-++++|+--+.-| ...+...+... +..||++|.+..... ..++.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 3445556667778899998654322 11121112111 356888887766543 23444443
No 309
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.3 Score=55.68 Aligned_cols=88 Identities=25% Similarity=0.310 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
..+|+++|+.|+||||++..++.... .......+..++... .....+.++.....++.+.. ...+..+....+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 47999999999999999998887651 111123455555432 12244556666666665432 2234455444443 3
Q ss_pred hccCcEEEEEeccc
Q 038398 226 LGKKKFLLLLDDIW 239 (720)
Q Consensus 226 l~~k~~LlVlDdv~ 239 (720)
+.++. ++++|-..
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 44443 66677654
No 310
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.08 E-value=0.02 Score=51.68 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
.-.+++|+|+.|.|||||++.+..-.. ...+.+|+.-.. .++.-. +-+.-+...-.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 346899999999999999999977641 223334432100 000000 011122233334555
Q ss_pred hccCcEEEEEeccccccc---cccccccCCCCCCCcEEEEEcCChhHhh
Q 038398 226 LGKKKFLLLLDDIWERVD---LTKVGIPFPDPENKSKIVFTTHFLEICG 271 (720)
Q Consensus 226 l~~k~~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~iiiTtR~~~v~~ 271 (720)
+-.++-++++|+.-..-| ...+...+... +..||++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 666777999998754322 12221112111 246888887765543
No 311
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.06 E-value=0.027 Score=58.33 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=42.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcC---CCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLG---APNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 206 (720)
-.++-|+|++|+|||+|+.+++-.... ....-..++||+....+...++.+ +++.++..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 468889999999999999988643311 112234889999999888888755 45666543
No 312
>PRK07667 uridine kinase; Provisional
Probab=96.06 E-value=0.0082 Score=57.26 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=29.0
Q ss_pred HHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 135 FDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 135 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555533 345799999999999999999999876
No 313
>PRK08233 hypothetical protein; Provisional
Probab=96.06 E-value=0.0053 Score=58.05 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|++|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 314
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.00093 Score=64.37 Aligned_cols=93 Identities=25% Similarity=0.401 Sum_probs=74.7
Q ss_pred EEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcch-HHhccCCcccEEEccCCCCCccC
Q 038398 478 VHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTD-DFFQSMPSLRVFNMSNNHLLWKL 556 (720)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~l 556 (720)
...|.++.++.-...++.|..|+|+-|+|+.+..+..|++|+.|+|..|.+..+.. ..+.++++|+.|-|..|.-.+.-
T Consensus 25 Ncwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 25 NCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred cccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccccc
Confidence 34566677777778889999999999999999999999999999999998776643 23789999999999998766655
Q ss_pred Ccc-----ccCCCCCCEEe
Q 038398 557 PSG-----ISTLVSLEHLD 570 (720)
Q Consensus 557 p~~-----i~~l~~L~~L~ 570 (720)
+.. +.-||+|+.||
T Consensus 105 g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 105 GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhHHHHHHHHcccchhcc
Confidence 433 44677777775
No 315
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.02 E-value=0.14 Score=54.49 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.++|++|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988766
No 316
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.02 E-value=0.0077 Score=59.27 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+...+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998876
No 317
>PTZ00301 uridine kinase; Provisional
Probab=96.00 E-value=0.0059 Score=58.71 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 318
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.00 E-value=0.0066 Score=58.89 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+..+|+|.|++|+||||||+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 319
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.98 E-value=0.0025 Score=36.51 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=10.9
Q ss_pred CCEEeccCCCCcccchhhhc
Q 038398 566 LEHLDLSSTAITHLPIELQK 585 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~i~~ 585 (720)
|++|+|++|.++.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555555443
No 320
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.98 E-value=0.054 Score=54.24 Aligned_cols=124 Identities=16% Similarity=0.058 Sum_probs=65.9
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE---ecCcCCHHHHHHHHHHHhCC-CCCcc
Q 038398 136 DKVWRCLG-EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV---VSKDLQLEKIQEKIGRRIGF-FDESW 210 (720)
Q Consensus 136 ~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~~~~~i~~~l~~-~~~~~ 210 (720)
+.++..+. ......++|+|+.|+|||||.+.+..... .....+++. +...... .++...... +....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~ 170 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDV 170 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhcccccccc
Confidence 34444443 34457899999999999999999987762 222333332 1111111 223222211 11100
Q ss_pred ----CCCChhHHHHHHHHHhc-cCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHh
Q 038398 211 ----KNGSLEDKTSDILRILG-KKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEIC 270 (720)
Q Consensus 211 ----~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 270 (720)
...+.......+...+. ..+-++++|++...+.+..+...+ ..|..+|+||.+..+.
T Consensus 171 ~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 171 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 00011111222333333 478899999987766555553333 2477899999876553
No 321
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.97 E-value=0.033 Score=57.78 Aligned_cols=57 Identities=19% Similarity=0.390 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCC----CcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPN----VFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
.-.++-|+|++|+|||++|.+++-.. .... .=..++||+....++...+.+. +..++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 34788899999999999999998664 1111 1148999999888887766543 34444
No 322
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.022 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|.|+.|.|||||++.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998765
No 323
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.95 E-value=0.0062 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998776
No 324
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.93 E-value=0.0037 Score=69.30 Aligned_cols=189 Identities=24% Similarity=0.302 Sum_probs=117.6
Q ss_pred CCCCcccEEEccCC-CCcCc-chHHhccCCcccEEEccCC-CCCccC----CccccCCCCCCEEeccCCC-Ccccc-hhh
Q 038398 513 PTCPHLLSLFLSDN-SLKMS-TDDFFQSMPSLRVFNMSNN-HLLWKL----PSGISTLVSLEHLDLSSTA-ITHLP-IEL 583 (720)
Q Consensus 513 ~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~L~~~-~~~~~l----p~~i~~l~~L~~L~L~~~~-i~~lp-~~i 583 (720)
..+++|+.|.+..+ .+... .......++.|+.|+++++ ...... +.....+.+|+.|+++++. ++..- ..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34788999999888 34432 1234678899999999973 222221 2234466899999999986 66331 122
Q ss_pred -hcCCCCCEEeccCCcCCCCCch-hhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecc
Q 038398 584 -QKLVNLKCLNLEYMNNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKS 661 (720)
Q Consensus 584 -~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 661 (720)
..+++|++|.+.+|..++.-.- .+...+++|++|++.+|.... .........++++|+.|.+....
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~------------d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT------------DSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch------------HHHHHHHHHhCcchhhhhhhhcC
Confidence 2378999999888865432211 134567889999999887652 11122224456666666644322
Q ss_pred -hhhHHHHhhhh--hhh-hhccccccccccCCCccccccccccCCcc-eeeecCCCCC
Q 038398 662 -WQALKELLISQ--ELQ-RSTQSLFLRCFNDSKSLDIFCLAGLRNLN-KLYVAGCKHL 714 (720)
Q Consensus 662 -~~~l~~l~~~~--~~~-~~L~~L~l~~~~~l~~l~~~~l~~l~~L~-~L~l~~c~~l 714 (720)
+..+..+.... ... ..+..+.+..|++++.+.+...+ ..... .+.+.+|+.|
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 22333332221 222 37788888888888888866666 44444 6888889888
No 325
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.92 E-value=0.047 Score=55.15 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|||.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998776554
No 326
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.052 Score=55.96 Aligned_cols=96 Identities=25% Similarity=0.367 Sum_probs=58.7
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc--
Q 038398 135 FDKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW-- 210 (720)
Q Consensus 135 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~-- 210 (720)
+.++-+.|..+ .-.+|.|-|-+|+|||||.-+++.+.. ..- .+.||+-... ..+ .+--+..++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEE
Confidence 44555556543 347999999999999999999999983 222 7788764433 322 233455565433221
Q ss_pred -CCCChhHHHHHHHHHhccCcEEEEEecccc
Q 038398 211 -KNGSLEDKTSDILRILGKKKFLLLLDDIWE 240 (720)
Q Consensus 211 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (720)
...+.++..+.+.+ .++-++|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 22333443333333 5788999998754
No 327
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.91 E-value=0.011 Score=54.77 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc--CCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD--LQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDIL 223 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (720)
.-.+++|.|+.|+|||||.+.++... ....+.+++.-..- .+..+. ....++... +-+.-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 34689999999999999999998654 23344455432111 111111 111111110 1122233333455
Q ss_pred HHhccCcEEEEEeccccccc---cccccccCCC-CCCCcEEEEEcCChhHhh
Q 038398 224 RILGKKKFLLLLDDIWERVD---LTKVGIPFPD-PENKSKIVFTTHFLEICG 271 (720)
Q Consensus 224 ~~l~~k~~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iiiTtR~~~v~~ 271 (720)
..+-.++-++++|+.-+.-| ...+...+.. ...|..||++|.+.....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56666788999998754322 1122111211 123667888888766433
No 328
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.91 E-value=0.15 Score=52.13 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=58.3
Q ss_pred HHHHHhcCC---CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---
Q 038398 137 KVWRCLGEE---QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW--- 210 (720)
Q Consensus 137 ~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--- 210 (720)
.|-..|..+ .-+++-|+|+.|+||||||..+.... ...-..++||.....++.. .+.+++...+..
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~ 111 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVV 111 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEe
Confidence 444455433 34699999999999999999988776 2234578899987776653 344455443221
Q ss_pred CCCChhHHHHHHHHHhccC-cEEEEEecccc
Q 038398 211 KNGSLEDKTSDILRILGKK-KFLLLLDDIWE 240 (720)
Q Consensus 211 ~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~ 240 (720)
.....++..+.+.+.++.. .-++|+|-|-.
T Consensus 112 ~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 112 QPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp E-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred cCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 2344566666666666554 45889998864
No 329
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.90 E-value=0.014 Score=65.60 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=57.3
Q ss_pred CCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 124 PCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
..+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+... ...++..+|..- ...+...+++.+...+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 3356799999999888877654 4788999999999999999998762 345677888665 3335666777777655
Q ss_pred C
Q 038398 204 G 204 (720)
Q Consensus 204 ~ 204 (720)
+
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 4
No 330
>PRK10867 signal recognition particle protein; Provisional
Probab=95.90 E-value=0.034 Score=59.50 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+.+|.++|++|+||||+|..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999888887765
No 331
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.90 E-value=0.036 Score=53.24 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhccCcEEEEEecccc------ccccccccccCCCCCCCcEEEEEcCChhHhhhh
Q 038398 216 EDKTSDILRILGKKKFLLLLDDIWE------RVDLTKVGIPFPDPENKSKIVFTTHFLEICGAL 273 (720)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~ 273 (720)
++..-.+.+.|-..+-+|+-|+--. ......+...+ ....|..||+.|.+..++..+
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~-~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL-NKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHHhC
Confidence 3444456667778888999997421 11122221111 223578899999999998764
No 332
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.87 E-value=0.017 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998754
No 333
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.04 Score=57.33 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
..++|+++|++|+||||++..++.... ... ..+.+++.... ....+-++.....++.+.. ...+.....+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 357999999999999999999987762 122 23445554322 1223334444444444321 12344455444433
Q ss_pred Hhcc-CcEEEEEeccc
Q 038398 225 ILGK-KKFLLLLDDIW 239 (720)
Q Consensus 225 ~l~~-k~~LlVlDdv~ 239 (720)
.-.. +.=++++|-..
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23467778664
No 334
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.85 E-value=0.019 Score=60.23 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCCcCchHHHHHHHHHhcCC--------------CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEE--------------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+||.++.++.+.-++... ..+.|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789998888876554320 24688999999999999999999887
No 335
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.84 E-value=0.0061 Score=52.51 Aligned_cols=28 Identities=39% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHhhhcCCCCCcCE
Q 038398 150 IGLYGMGGVGKTTLLTKINNKLLGAPNVFDV 180 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 180 (720)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 556654
No 336
>PRK06762 hypothetical protein; Provisional
Probab=95.83 E-value=0.0076 Score=56.00 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 337
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.82 E-value=0.038 Score=59.10 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCcc-CCCChhHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDESW-KNGSLEDKTSDIL 223 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 223 (720)
.+.+|.++|++|+||||+|..++.... .+.. ..+..|++... +...+.++......+.+.... ...++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK-KKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 467999999999999999988887751 1111 23444544321 122333444455555432111 1223334433333
Q ss_pred HHhccCcE-EEEEeccc
Q 038398 224 RILGKKKF-LLLLDDIW 239 (720)
Q Consensus 224 ~~l~~k~~-LlVlDdv~ 239 (720)
+.+..+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33433444 77777653
No 338
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.82 E-value=0.014 Score=60.48 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=40.3
Q ss_pred CCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 124 PCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|...+||.++.+..+.-.+.+....-|.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 446789999999998777766666778899999999999999997655
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.82 E-value=0.046 Score=50.30 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEE---EEEecCcCCHHHHHHHHHHHhCCCCC--ccCCCCh------
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVI---WVVVSKDLQLEKIQEKIGRRIGFFDE--SWKNGSL------ 215 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~v~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~------ 215 (720)
...|-|++..|.||||.|..+.-+.. ...+ .++ |+.-.....-..++..+.-.+..... .+...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 46888999999999999998877762 2223 333 33333223333444332100000000 0111111
Q ss_pred -hHHHHHHHHHhccCc-EEEEEeccccc-----cccccccccCCCCCCCcEEEEEcCCh
Q 038398 216 -EDKTSDILRILGKKK-FLLLLDDIWER-----VDLTKVGIPFPDPENKSKIVFTTHFL 267 (720)
Q Consensus 216 -~~~~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~ 267 (720)
.+..+..++.+...+ =|+|||++-.. -+.+.+...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122333444444444 49999998532 22223333333344567899999975
No 340
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.015 Score=55.69 Aligned_cols=88 Identities=17% Similarity=0.268 Sum_probs=54.5
Q ss_pred cCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 129 VGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
=|-.+.++++.+...- +.+.-|..+|++|.|||-+|++|+++. .. +|+.|-.
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---da-----cfirvig------- 244 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DA-----CFIRVIG------- 244 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cc-----eEEeehh-------
Confidence 3666677766554321 356778999999999999999999987 33 3343321
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHHhcc-CcEEEEEecccc
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRILGK-KKFLLLLDDIWE 240 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 240 (720)
.++.+..- .........+.+..+. |-++|.||+++.
T Consensus 245 -selvqkyv--------gegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 -SELVQKYV--------GEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -HHHHHHHh--------hhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 22222221 1123445556665555 567888998753
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.80 E-value=0.029 Score=52.47 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34699999999999999999988654
No 342
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.051 Score=53.13 Aligned_cols=122 Identities=22% Similarity=0.240 Sum_probs=67.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCC----------Cc---CEEEEEEec----CcC--CH----------------
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPN----------VF---DVVIWVVVS----KDL--QL---------------- 192 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~v~----~~~--~~---------------- 192 (720)
.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||.=. ..+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 79999999999999999999873311010 01 245665311 111 11
Q ss_pred ------HHHHHHHHHHhCCCC---CccCCCChhHH-HHHHHHHhccCcEEEEEeccccc------cccccccccCCCCCC
Q 038398 193 ------EKIQEKIGRRIGFFD---ESWKNGSLEDK-TSDILRILGKKKFLLLLDDIWER------VDLTKVGIPFPDPEN 256 (720)
Q Consensus 193 ------~~~~~~i~~~l~~~~---~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~ 256 (720)
.+...+.++..+... .....-+-.+. .-.|.+.|..++=|++||+--.. ..+-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 133444455554432 11122222233 33456678888999999975332 222333223322 3
Q ss_pred CcEEEEEcCChhHhh
Q 038398 257 KSKIVFTTHFLEICG 271 (720)
Q Consensus 257 gs~iiiTtR~~~v~~ 271 (720)
|+.|+++|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 889999998865543
No 343
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.79 E-value=0.2 Score=51.56 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=35.6
Q ss_pred eeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHH
Q 038398 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLAL 326 (720)
Q Consensus 278 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 326 (720)
++++++++.+|+..++.-+....-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999888765542222344556667777779998644
No 344
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.78 E-value=0.038 Score=52.75 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=28.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-------CEEEEEEecCc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-------DVVIWVVVSKD 189 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~v~~~ 189 (720)
.++.|.|++|+||||++..+..........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5888999999999999999887763212121 37888876655
No 345
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.014 Score=51.91 Aligned_cols=44 Identities=27% Similarity=0.470 Sum_probs=34.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCC
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~ 206 (720)
+|.|-|++|+||||+|+.+.++. .. . + .+.-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl--~-----~------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GL--K-----L------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CC--c-----e------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999987 11 1 1 13346788888888765
No 346
>PRK03839 putative kinase; Provisional
Probab=95.78 E-value=0.0077 Score=56.83 Aligned_cols=23 Identities=48% Similarity=0.680 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 347
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.77 E-value=0.043 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|++|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 348
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.75 E-value=0.0083 Score=57.04 Aligned_cols=26 Identities=38% Similarity=0.374 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998775
No 349
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.17 Score=55.63 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=77.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL- 226 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 226 (720)
.-|.++|++|+|||-||-++.... ..-||+|... +++.+.. ..+ ++..+.+.+.-
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP--------ElL~KyI-------GaS-Eq~vR~lF~rA~ 757 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP--------ELLSKYI-------GAS-EQNVRDLFERAQ 757 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH--------HHHHHHh-------ccc-HHHHHHHHHHhh
Confidence 468899999999999999998876 1235666543 1222211 112 33334444433
Q ss_pred ccCcEEEEEecccccc-------------ccccccccCC--CCCCCcEEEE-EcCChhHhhh-h---ccCceeeccCCCh
Q 038398 227 GKKKFLLLLDDIWERV-------------DLTKVGIPFP--DPENKSKIVF-TTHFLEICGA-L---KAHEFLKVECLGP 286 (720)
Q Consensus 227 ~~k~~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~gs~iii-TtR~~~v~~~-~---~~~~~~~l~~L~~ 286 (720)
.-+++++.||++++.. ....+...+. .+-.|--|+. |||..-+-.. . .-++.+.-+..++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 4599999999987531 0112222221 1123444444 5554333111 1 1123344455566
Q ss_pred hhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 287 EDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 287 ~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
.|-.++|.............+ .+.++.+..|..
T Consensus 838 ~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred HHHHHHHHHHhhccCCccccc----hHHHhhhcCCCc
Confidence 677777776654322122222 445666666654
No 350
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.74 E-value=0.0088 Score=57.86 Aligned_cols=26 Identities=46% Similarity=0.560 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 351
>PRK14527 adenylate kinase; Provisional
Probab=95.73 E-value=0.015 Score=55.48 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|+|++|+||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.71 E-value=0.057 Score=54.33 Aligned_cols=91 Identities=21% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH--HHHHHHHHHHhCCCCCc-cCCCChhHH-HH
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL--EKIQEKIGRRIGFFDES-WKNGSLEDK-TS 220 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~ 220 (720)
.+.++|.++|++|+||||++..++.... ..-..+.+++... +.. .+-+.......+.+.-. ....+.... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 3468999999999999999999987762 2223566665432 222 23333344444432110 011222222 23
Q ss_pred HHHHHhccCcEEEEEeccc
Q 038398 221 DILRILGKKKFLLLLDDIW 239 (720)
Q Consensus 221 ~l~~~l~~k~~LlVlDdv~ 239 (720)
.+.....+..=++++|-.-
T Consensus 146 ~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 3333333444578888653
No 353
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.041 Score=54.97 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHH---HHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDK---TSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~~~l 222 (720)
.-+++=|+|+.|+||||+|.+++-.. +..-..++|++..+.+++..+.+--...+..-. -.+..+.++. +..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHH
Confidence 34688899999999999999987665 333448899999998888766443333121100 0122233332 3333
Q ss_pred HHHhccCcEEEEEeccc
Q 038398 223 LRILGKKKFLLLLDDIW 239 (720)
Q Consensus 223 ~~~l~~k~~LlVlDdv~ 239 (720)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 33333345688888874
No 354
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.71 E-value=0.016 Score=50.81 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 134 TFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 134 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+++.+.|.. ..-.+|.+.|.-|+||||+++.++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444432 234689999999999999999999986
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=95.70 E-value=0.088 Score=54.45 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC--CHHHHHHHHHHHhCCCCCc-cCCCChhHHH-HH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL--QLEKIQEKIGRRIGFFDES-WKNGSLEDKT-SD 221 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 221 (720)
+..+|.++|++|+||||++..++.... ...+ .++.+.. +.+ .....++.....++.+... ....+..... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999999888887662 2223 3444432 222 2333455666666654311 1112222222 22
Q ss_pred HHHHhccCcEEEEEecccc
Q 038398 222 ILRILGKKKFLLLLDDIWE 240 (720)
Q Consensus 222 l~~~l~~k~~LlVlDdv~~ 240 (720)
+...-....=++++|-...
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222222223888898743
No 356
>PRK04328 hypothetical protein; Provisional
Probab=95.69 E-value=0.034 Score=55.41 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD 189 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 189 (720)
.-.++.|.|++|+|||+||.++.... -..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 34789999999999999999977654 122356788887653
No 357
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.68 E-value=0.012 Score=60.68 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 124 PCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+.++|.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 446779999999988755544444568999999999999999997665
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.049 Score=51.68 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhccCcEEEEEecccccccccccccc---CC-CCCCCcEEEEEcCChhHhhhhccCcee
Q 038398 216 EDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIP---FP-DPENKSKIVFTTHFLEICGALKAHEFL 279 (720)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~---~~-~~~~gs~iiiTtR~~~v~~~~~~~~~~ 279 (720)
+.....+.+.+-=++-+.|||..++--|.+.+... +. -...|+-+++.|..+.++.....+.++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33445566666667889999999886665554211 10 123477788888888888877555443
No 359
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.66 E-value=0.011 Score=61.09 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=41.7
Q ss_pred CCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 124 PCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|...+||.++.+..+...+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 346679999999999988888777888899999999999999997765
No 360
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.65 E-value=0.0079 Score=51.14 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|+|++|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988776
No 361
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.03 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+..++|||++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 45789999999999999999999987
No 362
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.64 E-value=0.055 Score=53.26 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
.-.++.|.|.+|+||||+|.++..... ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 347899999999999999998765541 1234678887643
No 363
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.63 E-value=0.033 Score=55.84 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=58.2
Q ss_pred cCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC
Q 038398 129 VGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE 208 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 208 (720)
.|...+..+.+..+......+|.|.|+.|+||||+++.+.+... ..-..++.+.-........+ .++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEe---
Confidence 45444444433433334457899999999999999998877652 11113333321111111100 11111
Q ss_pred ccCCCChhHHHHHHHHHhccCcEEEEEeccccccccc
Q 038398 209 SWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLT 245 (720)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 245 (720)
...........++..++..+=.|+++++.+.+...
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11111235666777888888899999998876543
No 364
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.63 E-value=0.084 Score=54.79 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcC--CC-CCcCEEEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLG--AP-NVFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
.-.++-|+|.+|+|||+||..++-.... .. ..-..++||+....+...++. ++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3468889999999999999887754310 01 112379999999988887764 45566554
No 365
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.63 E-value=0.027 Score=59.73 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc----cCCCChhH---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES----WKNGSLED--- 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 217 (720)
.-..++|+|..|+|||||++.++... ..+.++++-++.. ....++.+.++..-+....- ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 44789999999999999999998654 2256666666554 34555666654442221100 01111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecccc
Q 038398 218 ---KTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 218 ---~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
..-.+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112244455 57899999999843
No 366
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.63 E-value=0.062 Score=51.75 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=56.9
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCC----ccC
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDE----SWK 211 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~----~~~ 211 (720)
.++.+.. ..-..++|.|.+|+|||+|+..+.+.. .-+.++++.+++. .+..++.+++...-..... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 3444433 233689999999999999999999886 2344588888754 4566666666443111100 001
Q ss_pred CCChhH------HHHHHHHHh--ccCcEEEEEeccc
Q 038398 212 NGSLED------KTSDILRIL--GKKKFLLLLDDIW 239 (720)
Q Consensus 212 ~~~~~~------~~~~l~~~l--~~k~~LlVlDdv~ 239 (720)
...... ..-.+.+++ +++.+|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 111111 111222333 5799999999983
No 367
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.62 E-value=0.013 Score=52.86 Aligned_cols=36 Identities=31% Similarity=0.223 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV 185 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 185 (720)
..+|.|.|.+|+||||||+++.... ...-..++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3589999999999999999999988 23334556654
No 368
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.017 Score=50.47 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
.+-|.|.|-+|+||||+|.+++... ..-|+++|+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhh
Confidence 3568899999999999999999765 134666654
No 369
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.60 E-value=0.035 Score=59.18 Aligned_cols=45 Identities=27% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCcCchHHHHHHHHHhcC-------C---------CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE-------E---------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+||.+..++.+...+.. . ..+.|.++|++|+|||++|+.+....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999988877554411 0 13568999999999999999998776
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.60 E-value=0.01 Score=57.99 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|.|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 371
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.081 Score=51.70 Aligned_cols=44 Identities=30% Similarity=0.364 Sum_probs=36.4
Q ss_pred CcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 128 TVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+=|.|..+++|.+...- ..+.-|.++|.+|.|||-||++|+|..
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 45899999999887632 245678899999999999999999986
No 372
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.023 Score=53.26 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
..+|+|-||-|+||||||+.+.++. . | .+++-.+.+++-+.....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l---~--~-~~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL---G--F-KVFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh---C--C-ceeeecccCChHHHHHHHhH
Confidence 4689999999999999999999998 2 2 23344445554444444443
No 373
>PRK04040 adenylate kinase; Provisional
Probab=95.56 E-value=0.011 Score=55.93 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999887
No 374
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.55 E-value=0.048 Score=59.15 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=52.8
Q ss_pred HHHHHHhcCC--CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---
Q 038398 136 DKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW--- 210 (720)
Q Consensus 136 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~--- 210 (720)
.++-+.|..+ .-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... +..++...+..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEe
Confidence 3444445432 346899999999999999999988762 22236788875433 3333222 44554422111
Q ss_pred CCCChhHHHHHHHHHhc-cCcEEEEEeccc
Q 038398 211 KNGSLEDKTSDILRILG-KKKFLLLLDDIW 239 (720)
Q Consensus 211 ~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~ 239 (720)
...+.++ +.+.+. .+.-++|+|.+.
T Consensus 141 ~e~~l~~----i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 141 AETNLEA----ILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred CCCCHHH----HHHHHHhhCCCEEEEechh
Confidence 1122232 333332 355678888874
No 375
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.54 E-value=0.027 Score=59.06 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCCcCchHHHHHHHHHhcC--------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.++.++.+..++.. -....|.++|++|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999888776632 014678999999999999999998886
No 376
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.53 E-value=0.047 Score=56.49 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCC----CCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAP----NVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
-.++-|+|++|+|||+++.+++... ... ..-..++||+....++...+.+ ++..++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4788999999999999999997664 111 0113799999988888776544 344444
No 377
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.51 E-value=0.52 Score=48.02 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCc-eEEEEEcCCCChHHHHHHHHHhhhcC-------CCCCcCEEEEEEe-cCcCCHHHHHHHHHHHhC
Q 038398 134 TFDKVWRCLGEEQV-GIIGLYGMGGVGKTTLLTKINNKLLG-------APNVFDVVIWVVV-SKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 134 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~v-~~~~~~~~~~~~i~~~l~ 204 (720)
.++.+.+.+..+.. .+..++|..|.||+++|+.+.+.... ...+-+.+.++.. +......++. .+...+.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhc
Confidence 34555666655544 56669999999999999998877511 1112222333321 1222333322 2333332
Q ss_pred CCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCC-hhHhh-hhccCceee
Q 038398 205 FFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHF-LEICG-ALKAHEFLK 280 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~-~~v~~-~~~~~~~~~ 280 (720)
... .-.+.+-++|+|+++... ....+...+.....++.+|++|.+ ..+.. ..+....++
T Consensus 83 ~~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 83 FSS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred cCC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 110 001466688889986532 233333334344456666665543 34432 233457899
Q ss_pred ccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 281 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
+.++++++..+.+... . . -++.+..++...+|.=-|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-----~---~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-----K---EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-----C---ChhHHHHHHHHcCCHHHHHHH
Confidence 9999999998877654 1 1 124466667677763345544
No 378
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.51 E-value=0.041 Score=58.65 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC-----CCCCccCCCChh-----
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG-----FFDESWKNGSLE----- 216 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~----- 216 (720)
-..++|+|+.|+|||||++.+.... .....++++.-.+..++.++....+.... .-... ......
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHHH
Confidence 4689999999999999999887543 12224455443344555555544443321 10000 111111
Q ss_pred HHHHHHHHHh--ccCcEEEEEecccc
Q 038398 217 DKTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 217 ~~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
...-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1122234444 47899999999843
No 379
>PRK00625 shikimate kinase; Provisional
Probab=95.48 E-value=0.011 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 380
>PTZ00035 Rad51 protein; Provisional
Probab=95.48 E-value=0.15 Score=52.99 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=39.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCC----CCCcCEEEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA----PNVFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
.-.++.|+|++|+|||||+..++-.. .. ...-..++||+....+....+ ..+++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 34789999999999999999887544 21 112236779998777777664 334555543
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.48 E-value=0.05 Score=49.38 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.079 Score=54.97 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
+.++|.++|+.|+||||++..++... ... -..+.+|+..... ....-++.....++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 45799999999999999999988765 112 2356677664322 234455556666654321 23345555444433
Q ss_pred Hhc-cCcEEEEEeccc
Q 038398 225 ILG-KKKFLLLLDDIW 239 (720)
Q Consensus 225 ~l~-~k~~LlVlDdv~ 239 (720)
.-. +..=++++|-..
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 221 334577778664
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.026 Score=52.77 Aligned_cols=118 Identities=26% Similarity=0.280 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCC--CCCc-cCC---------CC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGF--FDES-WKN---------GS 214 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~--~~~~-~~~---------~~ 214 (720)
-.+++|+|+.|+|||||++.++.... ...+.+++.-....... ..+...++. .... +.. +.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 46899999999999999999987541 22344443211100000 111111111 0000 000 11
Q ss_pred hhHHHHHHHHHhccCcEEEEEecccccccc---ccccccCCC-CCCCcEEEEEcCChhHhh
Q 038398 215 LEDKTSDILRILGKKKFLLLLDDIWERVDL---TKVGIPFPD-PENKSKIVFTTHFLEICG 271 (720)
Q Consensus 215 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~~~~-~~~gs~iiiTtR~~~v~~ 271 (720)
-+...-.+...+..++-++++|+.-..-|. ..+...+.. ...|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 122223455566678889999987543221 111111111 123677899998876544
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.43 E-value=0.04 Score=62.08 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 124 PCEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
..+.++|.++.++.+...+... +.+.++|++|+||||+|+.+.+... ...|..++++.-+ ..+...+++.+...+
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGE 90 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhh
Confidence 3466799999888888877654 3566999999999999999998872 3344434443322 223445566666655
Q ss_pred C
Q 038398 204 G 204 (720)
Q Consensus 204 ~ 204 (720)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 385
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.42 E-value=0.027 Score=55.44 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=56.3
Q ss_pred CcCchHHHHHHHHHhcC-------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 128 TVGLESTFDKVWRCLGE-------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
++|..-.++.|+..+.+ .++-+++.+|.+|+||.-+++.+++...+...+- .....+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---------------~~V~~fv 148 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---------------PFVHHFV 148 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---------------hhHHHhh
Confidence 46766666666666632 3567999999999999999999988873221111 1122222
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhcc-CcEEEEEeccccc
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGK-KKFLLLLDDIWER 241 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~ 241 (720)
....-+..+....-.+++...+++.++. ++-|+|||+++..
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 3332221110111122333334433333 7899999999864
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.42 E-value=0.12 Score=53.85 Aligned_cols=99 Identities=23% Similarity=0.197 Sum_probs=54.9
Q ss_pred HHHHHHHhcCC----CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc
Q 038398 135 FDKVWRCLGEE----QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES 209 (720)
Q Consensus 135 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~ 209 (720)
...+..++.++ +.++|.++||.|+||||-...++.++ .....-..+..|+...- ....+-++..+.-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 34444455443 47899999999999975444444444 11233345667765432 3455566677777776542
Q ss_pred cCCCChhHHHHHHHHHhccCcEEEEEecc
Q 038398 210 WKNGSLEDKTSDILRILGKKKFLLLLDDI 238 (720)
Q Consensus 210 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 238 (720)
...+..++...+.. +++.. +|.+|-+
T Consensus 265 -vv~~~~el~~ai~~-l~~~d-~ILVDTa 290 (407)
T COG1419 265 -VVYSPKELAEAIEA-LRDCD-VILVDTA 290 (407)
T ss_pred -EecCHHHHHHHHHH-hhcCC-EEEEeCC
Confidence 23444454444433 34444 3444544
No 387
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.41 E-value=0.01 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|.|+|++|+||||+|+.+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 388
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.41 E-value=0.082 Score=51.91 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
-.++.|.|++|+||||+|.+++.... +.. ..++|++.. .+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCC--CCHHHHHHHH
Confidence 46999999999999999877655441 111 356677633 3445555555
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.053 Score=49.79 Aligned_cols=115 Identities=26% Similarity=0.292 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC--HHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ--LEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
-.+++|+|..|.|||||++.+.... ......+++....... ... ....+.... +-+.-+...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHHH
Confidence 3689999999999999999998765 2234445543221111 111 111121110 11122333334555
Q ss_pred HhccCcEEEEEeccccccc---cccccccCCC-CCCCcEEEEEcCChhHhhh
Q 038398 225 ILGKKKFLLLLDDIWERVD---LTKVGIPFPD-PENKSKIVFTTHFLEICGA 272 (720)
Q Consensus 225 ~l~~k~~LlVlDdv~~~~~---~~~l~~~~~~-~~~gs~iiiTtR~~~v~~~ 272 (720)
.+...+-++++|+.-...| ...+...+.. ...+..++++|.+......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6666788999999754322 1122111111 1125678888887766544
No 390
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.40 E-value=0.043 Score=58.92 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc----cCCCChh----
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES----WKNGSLE---- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 216 (720)
.-..++|.|.+|+|||||+.++..... +.+-+.++++-++.. ....++...+...-...... ....+..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 347899999999999999999888762 235677888877643 45666666665542221100 0111111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeccc
Q 038398 217 --DKTSDILRIL---GKKKFLLLLDDIW 239 (720)
Q Consensus 217 --~~~~~l~~~l---~~k~~LlVlDdv~ 239 (720)
...-.+.+++ .++.+|+++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1223345555 3789999999984
No 391
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.39 E-value=0.027 Score=60.94 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=52.0
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEE-EEEecCcC-CHHHHHHHHHHHhCCCCCccCCCC
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVI-WVVVSKDL-QLEKIQEKIGRRIGFFDESWKNGS 214 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 214 (720)
+++++.. ..-...+|+|++|+|||||++.+.+... ..+-+..+ ++-|..-. .+.++.+.+-..+.... +....
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT--~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST--FDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC--CCCCH
Confidence 4444433 3346789999999999999999998652 23334333 44444432 23333333211110000 01111
Q ss_pred -----hhHHHHHHHHHh--ccCcEEEEEeccc
Q 038398 215 -----LEDKTSDILRIL--GKKKFLLLLDDIW 239 (720)
Q Consensus 215 -----~~~~~~~l~~~l--~~k~~LlVlDdv~ 239 (720)
.....-.+.+++ .++.+||++|++-
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111222333444 5789999999984
No 392
>PRK06217 hypothetical protein; Validated
Probab=95.39 E-value=0.013 Score=55.34 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|.|++|+||||+|+++....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999886
No 393
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.36 E-value=0.011 Score=56.79 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|++|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 394
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.35 E-value=0.058 Score=50.38 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC---cCCHHHHHHHHH--HH--hCCCCCccCCCChh--
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK---DLQLEKIQEKIG--RR--IGFFDESWKNGSLE-- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~-- 216 (720)
....|.|+|..|-||||.|..+.-+.. ...+ .+..+..-+ ..+-...++.+- .. .+.. -.+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHH
Confidence 347899999999999999998877762 2222 344443322 223333333321 00 0110 001111111
Q ss_pred -----HHHHHHHHHhccC-cEEEEEeccccc-----cccccccccCCCCCCCcEEEEEcCChh
Q 038398 217 -----DKTSDILRILGKK-KFLLLLDDIWER-----VDLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 217 -----~~~~~l~~~l~~k-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
+..+..++.+... -=++|||++-.. -+.+++...+.....+.-||+|-|+..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1233344445444 449999998532 222333333333445678999999753
No 395
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.35 E-value=0.77 Score=48.12 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEec-CcCCHHHHHHHHHHHhCCCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVS-KDLQLEKIQEKIGRRIGFFD 207 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~l~~~~ 207 (720)
.+.+|-.+|.-|.||||.|-.+++.+. .+=..+.-|++. ..+...+-++.+..+.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---KKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---HcCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 467899999999999999999998882 211223333322 22344566788888887654
No 396
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.35 E-value=0.012 Score=55.44 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.34 E-value=0.07 Score=53.46 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
.-.++.|.|++|+|||++|.+++.... ..=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 347899999999999999999876541 2234678888764
No 398
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.067 Score=56.44 Aligned_cols=90 Identities=22% Similarity=0.199 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCC-CCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAP-NVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDIL 223 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 223 (720)
...+|.++|+.|+||||.+..++....... ..-..+..++.... ......++...+.++.+.. ...+.......+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999887762111 12235555655432 1223335666666665431 2233344443333
Q ss_pred HHhccCcEEEEEeccc
Q 038398 224 RILGKKKFLLLLDDIW 239 (720)
Q Consensus 224 ~~l~~k~~LlVlDdv~ 239 (720)
. + .+.-++++|...
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 3 345588889874
No 399
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.31 E-value=0.042 Score=58.45 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC-----ccCCCChhH---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE-----SWKNGSLED--- 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~--- 217 (720)
.-..++|+|..|+|||||++.+.... . ....++...-.+...+.++.+..+..-+.... .........
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999888664 1 22233333333344555666555443322110 001111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEecccc
Q 038398 218 --KTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 218 --~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
..-.+.+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122344555 56899999999843
No 400
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.31 E-value=0.015 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 401
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.30 E-value=0.024 Score=62.91 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=38.8
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999888766555677899999999999999998653
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.057 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++.|+|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 403
>PRK08149 ATP synthase SpaL; Validated
Probab=95.26 E-value=0.062 Score=57.15 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCc----cCCCCh-h---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDES----WKNGSL-E--- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 216 (720)
.-..++|+|..|+|||||+..++... .-+.+++..+.. ..++.++..+.........-. ..+.+. .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 44689999999999999999888654 223444444443 345666666666543221100 011111 1
Q ss_pred --HHHHHHHHHh--ccCcEEEEEecccc
Q 038398 217 --DKTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 217 --~~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
.....+.+++ +++.+|+++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222344444 57999999999843
No 404
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.25 E-value=0.029 Score=48.24 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCcCchHHHHHHHHHhc----C---CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLG----E---EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|..-..+.|++++. . +.+-|++.+|++|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45777766666666553 2 356789999999999999998888774
No 405
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.24 E-value=0.089 Score=57.12 Aligned_cols=51 Identities=29% Similarity=0.379 Sum_probs=34.7
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 135 FDKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 135 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
+.++-+.|..+ .-.++.|.|.+|+|||||+.++..... ..-..++|++...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EE 132 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEE 132 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcC
Confidence 34444545432 347899999999999999999977662 1113577886543
No 406
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.21 E-value=0.016 Score=54.60 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++|.|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 407
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.20 E-value=0.021 Score=56.19 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCC-cCEEEEEEecCcCCHHHHHHHHHHHhCCCCC--------------cc
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNV-FDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE--------------SW 210 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~--------------~~ 210 (720)
.-.++.|.|++|+|||++|.++.... -.. =..++||+.... ...+.+.+. .++.... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 34799999999999999999876544 122 246788876544 344444433 3332110 00
Q ss_pred -C---CCChhHHHHHHHHHhcc-CcEEEEEeccc
Q 038398 211 -K---NGSLEDKTSDILRILGK-KKFLLLLDDIW 239 (720)
Q Consensus 211 -~---~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 239 (720)
. ..+.......+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 0 34566666777776655 45788888863
No 408
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.19 E-value=0.028 Score=53.16 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV 185 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 185 (720)
.++|.|+|+.|+|||||++++.... ...|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 56776555544
No 409
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.19 E-value=0.055 Score=61.69 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (720)
.-+++-|+|++|+||||||.+++.... ..=..++|+.....++. ..+.+++...+. ......++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 357888999999999999988765541 22246789987776663 356666654321 1233445555566
Q ss_pred HHHhcc-CcEEEEEeccc
Q 038398 223 LRILGK-KKFLLLLDDIW 239 (720)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~ 239 (720)
...++. +.-|+|+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 665544 56689999875
No 410
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.18 E-value=0.08 Score=56.24 Aligned_cols=45 Identities=24% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCcCchHHHHHHHHHhc-------C----C-------CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLG-------E----E-------QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+||.++.++.+...+. . . ....|.++|++|+|||++|+.+....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 45899999988865541 1 1 12579999999999999999998766
No 411
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.18 E-value=0.074 Score=52.78 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcC-CCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCC-----ccCCCChhH-
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLG-APNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDE-----SWKNGSLED- 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 217 (720)
.-+.++|.|..|+|||+|+..+.+...- .+..-+.++++-+++. .+..++.+++...-..... ........+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999998876510 1233578889988765 4566677666654222110 001111111
Q ss_pred ----HHHHHHHHhc---cCcEEEEEecccc
Q 038398 218 ----KTSDILRILG---KKKFLLLLDDIWE 240 (720)
Q Consensus 218 ----~~~~l~~~l~---~k~~LlVlDdv~~ 240 (720)
..-.+.++++ ++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1223445553 6899999999854
No 412
>PRK05439 pantothenate kinase; Provisional
Probab=95.17 E-value=0.15 Score=52.02 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999988765
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.17 E-value=0.027 Score=50.41 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
++|.|+|+.|+|||||++.+.+... +..+...++.....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 34455555555444
No 414
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.15 E-value=0.028 Score=58.89 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
....|.|.|+.|+||||+++.+.... .......++. +.+.... ..... ..+.. ... ...+.......++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~-q~e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLIN-QRE-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEE-ccc-cCCCCcCHHHHHHHh
Confidence 34789999999999999999988765 2233333332 2222111 00000 00000 000 111223456667778
Q ss_pred hccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChh
Q 038398 226 LGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 226 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
++..+=.|++|++.+.+.+..... ....|..++.|.....
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~---aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALT---AAETGHLVFGTLHTNS 231 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHH---HHHcCCcEEEEEcCCC
Confidence 888999999999987655443211 1234555666665433
No 415
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.13 E-value=0.063 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999877
No 416
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.12 E-value=0.019 Score=53.99 Aligned_cols=23 Identities=43% Similarity=0.804 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 417
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.026 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|.+|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34689999999999999999987544
No 418
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.11 E-value=0.021 Score=52.75 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+++|+|+.|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 419
>PRK05922 type III secretion system ATPase; Validated
Probab=95.11 E-value=0.063 Score=57.14 Aligned_cols=90 Identities=13% Similarity=0.224 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCcc----CCCCh-h---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDESW----KNGSL-E--- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~-~--- 216 (720)
.-..++|+|..|+|||||++.+.... ..+...++.++. .......+.+..........-. ...+. .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 44679999999999999999998664 123334433433 3344455545444332221100 11111 1
Q ss_pred --HHHHHHHHHh--ccCcEEEEEecccc
Q 038398 217 --DKTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 217 --~~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
...-.+.+++ +++.+|+++|++-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122344555 47899999999843
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.017 Score=54.00 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 421
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.11 E-value=0.053 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998875
No 422
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.12 Score=54.94 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
..+|+++|+.|+||||++..+.... ......+.+.++.... .....+-+....+.++.+.. ...+..+.... ...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~a-l~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLM-LHE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHH-HHH
Confidence 4799999999999999999887654 1111223344444322 12333445556666655432 22233333322 233
Q ss_pred hccCcEEEEEecc
Q 038398 226 LGKKKFLLLLDDI 238 (720)
Q Consensus 226 l~~k~~LlVlDdv 238 (720)
+.++. ++++|-.
T Consensus 267 l~~~d-~VLIDTa 278 (420)
T PRK14721 267 LRGKH-MVLIDTV 278 (420)
T ss_pred hcCCC-EEEecCC
Confidence 44443 4555654
No 423
>PRK05973 replicative DNA helicase; Provisional
Probab=95.09 E-value=0.13 Score=50.29 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
.-.++.|.|.+|+|||++|.++..... +. =..++|++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 346899999999999999999876651 22 235777766543 44554444
No 424
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.09 E-value=0.11 Score=48.07 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=47.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhcc
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGK 228 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 228 (720)
++.|.|.+|+|||++|.++.... ...++|+.-...++. ++.+.|......... .....+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~---~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPA---HWRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCC---CceEeecHHHHHHHHHh
Confidence 36799999999999999987652 135677776666654 344444433222221 22222333444444432
Q ss_pred --CcEEEEEecc
Q 038398 229 --KKFLLLLDDI 238 (720)
Q Consensus 229 --k~~LlVlDdv 238 (720)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347999986
No 425
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.08 E-value=0.034 Score=54.86 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=41.1
Q ss_pred HHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 136 DKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 136 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
.+++..+.. ++..+|||.|.||+|||||.-.+...+ ..+++--.++=|.-|..++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 455555543 567899999999999999999998887 33444445666655665554333
No 426
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.07 E-value=0.029 Score=57.27 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=40.7
Q ss_pred CCCcCchHHHHHHHHHhcC------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.++.++++++.+.. ..-+++.++||.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999998843 356899999999999999999998887
No 427
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.07 E-value=0.023 Score=54.84 Aligned_cols=26 Identities=42% Similarity=0.668 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|+||+|+||||..++++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999887
No 428
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.06 E-value=0.021 Score=57.52 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=47.4
Q ss_pred HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCCh
Q 038398 136 DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSL 215 (720)
Q Consensus 136 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 215 (720)
..+++.+...+ +-+.++|+.|+|||++++...... . ...| .+.-++.+...+...+++.+-..+.... .
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~-----~-- 91 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRR-----G-- 91 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECT-----T--
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCC-----C--
Confidence 34555554443 566899999999999999988765 2 2222 2344555554444443322211111000 0
Q ss_pred hHHHHHHHHHhccCcEEEEEeccc
Q 038398 216 EDKTSDILRILGKKKFLLLLDDIW 239 (720)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~ 239 (720)
. ...--.+|+.++.+||+.
T Consensus 92 ~-----~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 92 R-----VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp E-----EEEEESSSEEEEEEETTT
T ss_pred C-----CCCCCCCcEEEEEecccC
Confidence 0 000013688899999985
No 429
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.05 E-value=0.13 Score=49.58 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|.|+.|+|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34689999999999999999997643
No 430
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.04 E-value=0.033 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 431
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.02 E-value=0.019 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 432
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.02 E-value=0.017 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 433
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.02 E-value=0.037 Score=53.83 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC
Q 038398 134 TFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ 191 (720)
Q Consensus 134 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 191 (720)
...++++.+.. .+..+|+|.|+||+|||||.-.+...+. .+++--.++=|.-|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCC
Confidence 34455555533 4678999999999999999999988872 233333444454444444
No 434
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.02 E-value=0.091 Score=48.75 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=45.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCC-ChhHHHHHHHHHh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNG-SLEDKTSDILRIL 226 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l 226 (720)
.+|.|.|.+|+||||+|..+.... . . .++|+.-... ...+..+.+..........|... ...++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998775 1 1 2344443333 33345555544443222222211 1122333333333
Q ss_pred ccCcEEEEEecc
Q 038398 227 GKKKFLLLLDDI 238 (720)
Q Consensus 227 ~~k~~LlVlDdv 238 (720)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 33 337888886
No 435
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.02 E-value=0.019 Score=51.22 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 436
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.01 E-value=0.15 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999988754
No 437
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.01 E-value=0.046 Score=53.88 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 135 FDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 135 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+.+...+.... +..|+|++|.||||++..+....
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 444545554332 78899999999998777766655
No 438
>PRK15453 phosphoribulokinase; Provisional
Probab=95.01 E-value=0.13 Score=51.19 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|.|.+|+||||+|+.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998766
No 439
>PRK14530 adenylate kinase; Provisional
Probab=95.01 E-value=0.019 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 440
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.99 E-value=0.04 Score=52.07 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++++|.+..+..+.-.... ..-+.++|++|+|||++|+.+-.-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 5689999888887665543 3678999999999999999987654
No 441
>PRK13949 shikimate kinase; Provisional
Probab=94.99 E-value=0.02 Score=53.15 Aligned_cols=24 Identities=42% Similarity=0.438 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|+|++|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999887
No 442
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.98 E-value=0.017 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998775
No 443
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.97 E-value=0.074 Score=57.16 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
.+++.++|++|+||||++..++... .....-..+..|+..... .....+......++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3689999999999999999887765 101222356667653321 112233334444544331 22333444444433
Q ss_pred hccCcEEEEEecc
Q 038398 226 LGKKKFLLLLDDI 238 (720)
Q Consensus 226 l~~k~~LlVlDdv 238 (720)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3457888865
No 444
>PRK13947 shikimate kinase; Provisional
Probab=94.95 E-value=0.021 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 445
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.95 E-value=0.038 Score=56.56 Aligned_cols=49 Identities=29% Similarity=0.317 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
.+++.+.|.||+||||+|.+..-... .....+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998766552 12244777777777777666544
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.019 Score=51.87 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 038398 149 IIGLYGMGGVGKTTLLTKIN 168 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~ 168 (720)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 447
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.93 E-value=0.056 Score=62.53 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCCcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|+...++++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4689999888887666532 233578899999999999999998765
No 448
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.93 E-value=0.13 Score=55.19 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc----cCCCChh----
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES----WKNGSLE---- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 216 (720)
.-..++|.|.+|+|||||+.++..... .++-+.++++-++.. ..+.++.+++...-.....- ....+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 347899999999999999999877652 122246777777653 45666777766542221100 0111111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEecccc
Q 038398 217 --DKTSDILRIL---GKKKFLLLLDDIWE 240 (720)
Q Consensus 217 --~~~~~l~~~l---~~k~~LlVlDdv~~ 240 (720)
...-.+.+++ +++.+|+++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1223355666 67999999999843
No 449
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.93 E-value=0.039 Score=51.13 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=31.9
Q ss_pred CcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 128 TVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+||....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 36777777777776633 233567799999999999999999865
No 450
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.89 E-value=0.033 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 451
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.86 E-value=0.021 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 452
>PF13245 AAA_19: Part of AAA domain
Probab=94.84 E-value=0.033 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
+.+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467888999999999555544433
No 453
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.83 E-value=0.028 Score=53.43 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=35.1
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE
Q 038398 131 LESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV 185 (720)
Q Consensus 131 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 185 (720)
+..+....++.|. ...++.+.|++|.|||.||.+..-+. -..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 4445555666665 45799999999999999999887665 2347888888774
No 454
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.029 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 455
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.81 E-value=0.023 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998775
No 456
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.81 E-value=0.03 Score=61.44 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=40.7
Q ss_pred CCcCchHHHHHHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE
Q 038398 127 PTVGLESTFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV 185 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 185 (720)
+++--.+-+++|..||.. ...+++.+.||+|+||||.++.+++.. .|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 344446678888888854 235789999999999999999999886 355666754
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.81 E-value=0.12 Score=56.04 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCC
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~ 206 (720)
..+++++|+.|+||||++..++.... .+..-..+..+.... .....+-++.....++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 37999999999999999999987651 111112445555432 122334455555655543
No 458
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.78 E-value=0.077 Score=56.55 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCC----ccCCCCh-hH--
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDE----SWKNGSL-ED-- 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~-~~-- 217 (720)
.-..++|+|..|+|||||++.++... ..+.++++-++.. ....++..+.+..-+.... ...+... ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45789999999999999999988765 1245566666543 3444555544433222110 0011111 11
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecccc
Q 038398 218 ---KTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 218 ---~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
..-.+.+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122344455 57899999999843
No 459
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.77 E-value=0.3 Score=50.34 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 460
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.76 E-value=0.024 Score=52.48 Aligned_cols=22 Identities=55% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 461
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.76 E-value=0.03 Score=54.07 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=26.4
Q ss_pred hcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 142 LGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 142 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+.++++|+++|+.|+|||||..++.+..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999999998875
No 462
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.76 E-value=0.036 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 568999999999999999999887
No 463
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.75 E-value=0.062 Score=56.09 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=46.0
Q ss_pred CCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHH
Q 038398 127 PTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 196 (720)
.++|+++.+..+...+..+ +.+.+.|++|+|||+||+.+.... . -..++|.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhc
Confidence 4789888888887777554 458899999999999999999987 2 233556666665555543
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.70 E-value=0.028 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKIN 168 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~ 168 (720)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 465
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.70 E-value=0.092 Score=56.03 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCC----ccCCCC-hhH--
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDE----SWKNGS-LED-- 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~----~~~~~~-~~~-- 217 (720)
.-..++|.|.+|+|||||+..+..... .++-+.++++-++. .....++.+++...-..... .....+ ...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 347899999999999999999887651 22234677777765 34566677766543222110 001111 111
Q ss_pred ---HHHHHHHHh---ccCcEEEEEecccc
Q 038398 218 ---KTSDILRIL---GKKKFLLLLDDIWE 240 (720)
Q Consensus 218 ---~~~~l~~~l---~~k~~LlVlDdv~~ 240 (720)
..-.+.+++ +++.+|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 223455666 45899999999843
No 466
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.69 E-value=0.038 Score=54.43 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=22.7
Q ss_pred EEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 152 LYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 152 I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
|+||+|+||||+++.+.+.. . ..-..++-|+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~-~--~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL-E--SNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH-T--TT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHH-H--hccCCceEEEcch
Confidence 68999999999999999988 2 2323455555433
No 467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.68 E-value=0.036 Score=55.76 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
.-+++.|.|.+|+|||++|.++.... ......++||+.... ...+.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHH
Confidence 45799999999999999999998887 344778999987654 334444433
No 468
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.67 E-value=0.026 Score=51.57 Aligned_cols=22 Identities=45% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 469
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.65 E-value=0.2 Score=61.68 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+-|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999886
No 470
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.63 E-value=0.087 Score=56.09 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc----cCCCChhH---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES----WKNGSLED--- 217 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 217 (720)
.-..++|.|..|+|||||.+.++... ..+.++++-++.. ....++.+..+..-+..... ....+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 44789999999999999999998765 2356777777654 34555554433322211100 01111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEecccc
Q 038398 218 ---KTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 218 ---~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
..-.+.+++ +++.+|+++|++-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112344444 57999999999843
No 471
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.63 E-value=0.027 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.63 E-value=0.031 Score=53.19 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 473
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.62 E-value=0.087 Score=51.89 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=42.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc--CCHHHHHHHHHHHh----CCCCCccCCCChhHHHHHH
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD--LQLEKIQEKIGRRI----GFFDESWKNGSLEDKTSDI 222 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~~~l 222 (720)
+|+|.|.+|+||||+|+.+.+.+. ..+ ..+..++...- .+-......+.... +...-.....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~-~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA-REG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999988762 111 12344443222 12222222222221 1111011445666677777
Q ss_pred HHHhccCc
Q 038398 223 LRILGKKK 230 (720)
Q Consensus 223 ~~~l~~k~ 230 (720)
+.+..++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77666543
No 474
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.61 E-value=0.056 Score=51.43 Aligned_cols=42 Identities=36% Similarity=0.497 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
.|+|+|-||+||||+|..+...... ++.| .+.=|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCCh
Confidence 5899999999999999997666622 2223 3444555555544
No 475
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.57 E-value=0.023 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 476
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.57 E-value=0.12 Score=55.15 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCC-----------CCCcCEEEEEEecCcCCHHHHHHHHHHHhC-CCCC-----
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA-----------PNVFDVVIWVVVSKDLQLEKIQEKIGRRIG-FFDE----- 208 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~-~~~~----- 208 (720)
.-+.++|.|.+|+|||||+.++.+.. .. ++.-..+++..++......+.+.+.+..-+ ....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 34689999999999999999988775 21 011116677778877666665555555544 2110
Q ss_pred ccCCCChhH-----HHHHHHHHhc---cCcEEEEEeccc
Q 038398 209 SWKNGSLED-----KTSDILRILG---KKKFLLLLDDIW 239 (720)
Q Consensus 209 ~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv~ 239 (720)
......... ..-.+.++++ ++.+|+++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 001111111 1223556665 589999999984
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.55 E-value=0.028 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 478
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.54 E-value=0.032 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|+|+.|+||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999876
No 479
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.54 E-value=0.16 Score=54.61 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCChHHHHH-HHHHhhhcCC-----CCCcCEEEEEEecCcCC-HHHHHHHHHHHhC-CCCC-----ccCC
Q 038398 146 QVGIIGLYGMGGVGKTTLL-TKINNKLLGA-----PNVFDVVIWVVVSKDLQ-LEKIQEKIGRRIG-FFDE-----SWKN 212 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~-~~~~-----~~~~ 212 (720)
.-..++|.|..|+|||+|| -.+.+.. .+ .+.-+.++|+.+++... ..+ ..+.+..-+ .... ....
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 3468999999999999997 5555553 11 12446788898887654 334 333333333 1110 0011
Q ss_pred CChhH-----HHHHHHHHh--ccCcEEEEEecccc
Q 038398 213 GSLED-----KTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 213 ~~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
....+ ..-.+.+++ +++.+|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11111 112333444 47899999999853
No 480
>PRK14529 adenylate kinase; Provisional
Probab=94.51 E-value=0.13 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhh
Q 038398 150 IGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 150 i~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|.|.|++|+||||+|+.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999887
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.51 E-value=0.051 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 133 STFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 133 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++++..++.+ +++.++|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 356777777754 789999999999999999998764
No 482
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.50 E-value=0.18 Score=55.49 Aligned_cols=129 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-----EEEEEEecCcCCH-----------------HHHHHHHHHHhCCC
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-----VVIWVVVSKDLQL-----------------EKIQEKIGRRIGFF 206 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~v~~~~~~-----------------~~~~~~i~~~l~~~ 206 (720)
.|+|+|+.|+|||||.+.+........+... .+.|+.-....-. ..-.+..+..++..
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Q ss_pred CCcc-----CCCChhHHHHHHHHHhccCcEEEEEe------ccccccccccccccCCCCCCCcEEEEEcCChhHhhhhcc
Q 038398 207 DESW-----KNGSLEDKTSDILRILGKKKFLLLLD------DIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGALKA 275 (720)
Q Consensus 207 ~~~~-----~~~~~~~~~~~l~~~l~~k~~LlVlD------dv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~~ 275 (720)
.+.. .-+.-+...-.+...+-.++-+|||| |+.+.+.++.....++.. ||+.|.+........
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt-----vl~VSHDr~Fl~~va- 503 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT-----VLLVSHDRYFLDRVA- 503 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe-----EEEEeCCHHHHHhhc-
Q ss_pred CceeeccC
Q 038398 276 HEFLKVEC 283 (720)
Q Consensus 276 ~~~~~l~~ 283 (720)
.+++.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
No 483
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.15 Score=58.76 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=65.9
Q ss_pred CCCcCchHHHHHHHHHhcC------C--CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------E--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQE 197 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 197 (720)
..++|.++.+..|.+.+.. + ......+.|+.|+|||-||+++.... -+..+..+-++.| +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDms------e~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMS------EFQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechh------hhhh
Confidence 3457888888888888743 2 35677889999999999999998876 3444444444333 2222
Q ss_pred HHHHHhCCCCCccCCCChhHHHHHHHHHhccCcE-EEEEeccccc
Q 038398 198 KIGRRIGFFDESWKNGSLEDKTSDILRILGKKKF-LLLLDDIWER 241 (720)
Q Consensus 198 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 241 (720)
+.+.++.+ +. .-..+....|-+.++.++| +|+||||+..
T Consensus 633 -vskligsp-~g---yvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 -VSKLIGSP-PG---YVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred -hhhccCCC-cc---cccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22222322 11 1223344577788888876 7779999753
No 484
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.48 E-value=0.084 Score=56.39 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc----cCCCCh-h---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES----WKNGSL-E--- 216 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 216 (720)
.-..++|.|.+|+|||+|+..+.... . +.+-+.++|+-++.. ....++.+.+...-...... ..+.+. .
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 34689999999999999999988775 2 233478888888654 34566666665432221100 011111 1
Q ss_pred --HHHHHHHHHhc---cCcEEEEEecccc
Q 038398 217 --DKTSDILRILG---KKKFLLLLDDIWE 240 (720)
Q Consensus 217 --~~~~~l~~~l~---~k~~LlVlDdv~~ 240 (720)
...-.+.++++ ++.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12233455554 5899999999843
No 485
>PRK13948 shikimate kinase; Provisional
Probab=94.47 E-value=0.038 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999886
No 486
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.47 E-value=0.042 Score=63.59 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=57.6
Q ss_pred cCcEEEEEeccccccc---cccc----cccCCCCCCCcEEEEEcCChhHhhhhccCceeeccCCChhhHHHH-HHHHhcc
Q 038398 228 KKKFLLLLDDIWERVD---LTKV----GIPFPDPENKSKIVFTTHFLEICGALKAHEFLKVECLGPEDAWRL-FRENLRR 299 (720)
Q Consensus 228 ~k~~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~e~~~L-f~~~~~~ 299 (720)
..+-|+++|++-..-+ ...+ ...+ ...|+.+|+||....+.........+.-..+..++- .+ |..++..
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~p~Ykl~~ 477 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLSPTYKLLK 477 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCceEEEECC
Confidence 4789999999865322 1111 1122 135789999999887744322211111111111110 00 1001111
Q ss_pred CccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhc
Q 038398 300 DVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRR 351 (720)
Q Consensus 300 ~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (720)
+. + -...|-+|++++ |+|-.+..-|..+.. ....+++.+++.+..
T Consensus 478 G~----~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 478 GI----P-GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred CC----C-CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 10 1 134577888777 789888877776654 334456666555544
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.46 E-value=0.035 Score=52.47 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998765
No 488
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.45 E-value=0.029 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 489
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.45 E-value=0.078 Score=56.10 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 134 TFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 134 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+.+++.+.......+.|.|+||+|||+|.+++.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 44556666665666889999999999999999999887
No 490
>PLN02200 adenylate kinase family protein
Probab=94.43 E-value=0.036 Score=54.50 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|.|++|+||||+|+.+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 491
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.41 E-value=0.28 Score=49.62 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
-.++.|.|++|+||||++.+++.... ..+=..++|++... ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999999877651 22234688887655 345555555544
No 492
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.38 E-value=0.043 Score=56.28 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=30.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHH
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 196 (720)
+++.+.|.||+||||+|.+.+-...+ ++ ..+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHh
Confidence 68999999999999999887766522 22 235556655554444443
No 493
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.29 E-value=0.11 Score=51.56 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCChHHHHH-HHHHhhhcCCCCCcCEE-EEEEecCc-CCHHHHHHHHHHHhCCCCC-----ccCCCChhH-
Q 038398 147 VGIIGLYGMGGVGKTTLL-TKINNKLLGAPNVFDVV-IWVVVSKD-LQLEKIQEKIGRRIGFFDE-----SWKNGSLED- 217 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~v~~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 217 (720)
-+.++|.|.+|+|||+|| ..+.+.. .-+.+ +++-++.. ....++.+.+...-..... .........
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 468999999999999996 5555432 23333 66666654 4556666666643221110 001111111
Q ss_pred ----HHHHHHHHh--ccCcEEEEEecccc
Q 038398 218 ----KTSDILRIL--GKKKFLLLLDDIWE 240 (720)
Q Consensus 218 ----~~~~l~~~l--~~k~~LlVlDdv~~ 240 (720)
..-.+.+++ +++.+|+++||+-.
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 112233333 47899999999854
No 494
>PRK13975 thymidylate kinase; Provisional
Probab=94.28 E-value=0.038 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 495
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.25 E-value=0.036 Score=52.06 Aligned_cols=35 Identities=29% Similarity=0.228 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEE
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVV 185 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 185 (720)
-.++.|+|++|+|||||.+.+..=. ..=.+.+||.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEEC
Confidence 4689999999999999999875432 2223566663
No 496
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.25 E-value=0.029 Score=29.74 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=6.7
Q ss_pred CCCEEeccCCCCcccc
Q 038398 565 SLEHLDLSSTAITHLP 580 (720)
Q Consensus 565 ~L~~L~L~~~~i~~lp 580 (720)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 497
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.037 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
.-..|+|+|++|+|||||.+.+.--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998753
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.25 E-value=0.044 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998876
No 499
>PRK13946 shikimate kinase; Provisional
Probab=94.24 E-value=0.042 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 500
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.23 E-value=0.048 Score=51.70 Aligned_cols=45 Identities=24% Similarity=0.199 Sum_probs=30.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
++.|.|++|+|||+||.++..... ..=..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877652 1224577886643 34444433
Done!