Query 038398
Match_columns 720
No_of_seqs 485 out of 3860
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4E-48 1.4E-52 431.7 21.7 313 129-469 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.1E-40 1.8E-44 369.1 17.8 285 128-462 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-38 4E-43 393.4 26.2 315 123-468 121-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-35 3.9E-40 336.5 26.6 309 124-466 122-449 (591)
5 4fcg_A Uncharacterized protein 99.8 4.7E-19 1.6E-23 184.2 13.4 217 476-712 85-312 (328)
6 4fcg_A Uncharacterized protein 99.8 6.2E-19 2.1E-23 183.3 10.5 203 494-718 81-294 (328)
7 2z80_A TOLL-like receptor 2, v 99.7 9.5E-18 3.2E-22 176.7 14.4 233 477-715 36-315 (353)
8 3zyi_A Leucine-rich repeat-con 99.7 1.6E-17 5.3E-22 181.2 16.0 232 477-712 59-301 (452)
9 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-17 5E-22 169.7 14.8 219 477-714 16-238 (285)
10 3zyj_A Leucine-rich repeat-con 99.7 2E-17 6.8E-22 179.7 15.8 229 477-712 48-290 (440)
11 1h6u_A Internalin H; cell adhe 99.7 3.1E-17 1.1E-21 169.0 14.5 194 488-712 35-228 (308)
12 2z62_A TOLL-like receptor 4, v 99.7 6.4E-17 2.2E-21 164.0 15.8 218 477-712 12-235 (276)
13 2qen_A Walker-type ATPase; unk 99.7 5.1E-16 1.7E-20 163.2 21.6 292 126-463 12-349 (350)
14 1p9a_G Platelet glycoprotein I 99.7 5.1E-17 1.8E-21 165.6 13.3 202 490-713 6-207 (290)
15 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 161.2 14.7 198 496-712 18-216 (270)
16 3o6n_A APL1; leucine-rich repe 99.7 8.1E-17 2.8E-21 172.1 13.7 125 490-619 65-193 (390)
17 1ogq_A PGIP-2, polygalacturona 99.7 2.5E-17 8.5E-22 170.1 8.7 133 487-621 69-206 (313)
18 2z66_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 166.6 11.6 227 477-712 12-259 (306)
19 4fmz_A Internalin; leucine ric 99.7 8.5E-16 2.9E-20 161.4 19.0 219 481-713 53-299 (347)
20 2id5_A Lingo-1, leucine rich r 99.7 1.9E-16 6.4E-21 174.1 14.5 220 489-712 51-307 (477)
21 4fmz_A Internalin; leucine ric 99.7 1.1E-15 3.8E-20 160.5 19.8 223 480-714 96-324 (347)
22 2id5_A Lingo-1, leucine rich r 99.7 1.9E-16 6.4E-21 174.1 14.2 222 488-713 74-332 (477)
23 2fna_A Conserved hypothetical 99.7 3.8E-15 1.3E-19 157.0 23.6 290 126-462 13-356 (357)
24 1w5s_A Origin recognition comp 99.7 7.5E-16 2.6E-20 165.9 18.5 296 126-439 22-372 (412)
25 1ogq_A PGIP-2, polygalacturona 99.7 4.9E-17 1.7E-21 167.9 8.0 211 487-718 94-308 (313)
26 3oja_B Anopheles plasmodium-re 99.7 2.1E-16 7.1E-21 178.5 13.1 126 490-620 71-200 (597)
27 2xwt_C Thyrotropin receptor; s 99.7 1E-16 3.4E-21 158.8 8.9 207 484-714 23-239 (239)
28 3rfs_A Internalin B, repeat mo 99.7 5.6E-16 1.9E-20 156.6 14.2 194 476-693 45-239 (272)
29 3oja_B Anopheles plasmodium-re 99.7 6.2E-16 2.1E-20 174.6 16.0 105 476-580 79-187 (597)
30 3o6n_A APL1; leucine-rich repe 99.7 4.5E-16 1.5E-20 166.3 13.7 91 489-579 88-180 (390)
31 2ft3_A Biglycan; proteoglycan, 99.6 9.6E-16 3.3E-20 159.8 15.3 223 477-712 38-275 (332)
32 3zyi_A Leucine-rich repeat-con 99.6 5.5E-16 1.9E-20 169.0 13.7 216 495-718 55-282 (452)
33 1ozn_A Reticulon 4 receptor; N 99.6 8.6E-16 2.9E-20 156.5 13.9 197 497-712 14-212 (285)
34 1xku_A Decorin; proteoglycan, 99.6 7.2E-16 2.5E-20 160.7 13.5 215 477-717 36-255 (330)
35 3rgz_A Protein brassinosteroid 99.6 4.9E-16 1.7E-20 180.8 13.0 133 489-622 413-548 (768)
36 3v47_A TOLL-like receptor 5B a 99.6 1.3E-15 4.5E-20 166.3 15.7 141 478-621 16-163 (455)
37 3rfs_A Internalin B, repeat mo 99.6 2.1E-15 7.2E-20 152.4 15.9 199 486-711 33-232 (272)
38 3vq2_A TLR4, TOLL-like recepto 99.6 8.5E-16 2.9E-20 174.3 14.1 126 494-621 32-162 (606)
39 2z80_A TOLL-like receptor 2, v 99.6 8.2E-16 2.8E-20 161.8 11.8 201 494-712 31-233 (353)
40 1xku_A Decorin; proteoglycan, 99.6 2.1E-15 7.2E-20 157.1 14.8 203 489-713 95-305 (330)
41 3vq2_A TLR4, TOLL-like recepto 99.6 3.1E-15 1.1E-19 169.6 17.4 126 489-615 51-180 (606)
42 3zyj_A Leucine-rich repeat-con 99.6 9.9E-16 3.4E-20 166.3 12.5 211 495-712 44-266 (440)
43 4ecn_A Leucine-rich repeat pro 99.6 2.5E-16 8.6E-21 182.3 8.1 130 489-621 443-604 (876)
44 3bz5_A Internalin-J, INLJ; leu 99.6 4.4E-15 1.5E-19 161.4 17.4 221 476-717 46-280 (457)
45 3t6q_A CD180 antigen; protein- 99.6 1.4E-15 4.9E-20 172.4 14.1 126 489-615 52-180 (606)
46 1o6v_A Internalin A; bacterial 99.6 3.6E-15 1.2E-19 163.2 16.7 100 477-580 51-150 (466)
47 1wwl_A Monocyte differentiatio 99.6 8.2E-16 2.8E-20 158.7 10.8 198 492-712 93-307 (312)
48 2xwt_C Thyrotropin receptor; s 99.6 3.4E-16 1.2E-20 155.0 7.6 196 503-718 20-221 (239)
49 4ecn_A Leucine-rich repeat pro 99.6 3.1E-15 1.1E-19 173.2 16.7 233 475-718 551-822 (876)
50 3rgz_A Protein brassinosteroid 99.6 1.7E-15 5.8E-20 176.2 14.4 215 488-717 436-720 (768)
51 2z66_A Variable lymphocyte rec 99.6 4.4E-16 1.5E-20 160.5 8.3 178 493-687 77-259 (306)
52 2ft3_A Biglycan; proteoglycan, 99.6 1.4E-15 4.8E-20 158.6 12.2 214 494-718 33-257 (332)
53 2o6q_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 150.0 15.0 194 476-687 20-216 (270)
54 2z81_A CD282 antigen, TOLL-lik 99.6 2.4E-15 8.2E-20 168.4 14.0 191 480-687 13-207 (549)
55 3v47_A TOLL-like receptor 5B a 99.6 2.3E-15 8E-20 164.3 13.2 72 643-717 340-411 (455)
56 3m19_A Variable lymphocyte rec 99.6 9.4E-15 3.2E-19 145.7 15.9 175 495-687 15-190 (251)
57 1o6v_A Internalin A; bacterial 99.6 9.9E-15 3.4E-19 159.7 17.2 199 483-712 188-386 (466)
58 3t6q_A CD180 antigen; protein- 99.6 4.3E-15 1.5E-19 168.5 14.5 221 488-713 123-437 (606)
59 4eco_A Uncharacterized protein 99.6 5E-16 1.7E-20 176.4 6.6 220 489-718 201-473 (636)
60 2ast_B S-phase kinase-associat 99.6 1.4E-15 4.9E-20 158.9 9.5 103 495-597 71-178 (336)
61 3j0a_A TOLL-like receptor 5; m 99.6 8.8E-15 3E-19 172.0 17.3 143 476-621 8-157 (844)
62 2z7x_B TOLL-like receptor 1, v 99.6 1.2E-14 4E-19 161.6 17.4 119 475-597 3-125 (520)
63 4eco_A Uncharacterized protein 99.6 3.9E-15 1.3E-19 169.1 13.5 207 486-713 345-578 (636)
64 4ezg_A Putative uncharacterize 99.6 8.8E-15 3E-19 140.0 13.8 154 490-663 40-194 (197)
65 3bz5_A Internalin-J, INLJ; leu 99.6 4.9E-15 1.7E-19 161.0 13.3 203 486-712 34-244 (457)
66 1h6u_A Internalin H; cell adhe 99.6 1.4E-14 4.8E-19 149.0 15.4 190 475-693 44-233 (308)
67 1ziw_A TOLL-like receptor 3; i 99.6 6.2E-15 2.1E-19 169.6 13.8 144 476-622 8-155 (680)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.2E-14 7.6E-19 160.9 17.3 119 475-597 34-156 (562)
69 2z62_A TOLL-like receptor 4, v 99.6 5.3E-15 1.8E-19 149.8 10.7 196 477-687 33-235 (276)
70 3g06_A SSPH2 (leucine-rich rep 99.6 1.2E-14 4.1E-19 162.8 14.3 206 478-714 67-297 (622)
71 1h6t_A Internalin B; cell adhe 99.6 9.3E-15 3.2E-19 149.0 12.3 171 488-686 40-210 (291)
72 3oja_A Leucine-rich immune mol 99.6 3.9E-15 1.3E-19 163.3 10.1 196 489-714 53-250 (487)
73 1h6t_A Internalin B; cell adhe 99.6 5E-15 1.7E-19 151.0 10.2 185 498-713 28-212 (291)
74 4glp_A Monocyte differentiatio 99.6 5.2E-15 1.8E-19 152.6 9.6 201 493-713 90-306 (310)
75 2z63_A TOLL-like receptor 4, v 99.6 1.7E-14 5.9E-19 162.3 14.6 107 490-596 48-158 (570)
76 3o53_A Protein LRIM1, AGAP0063 99.6 3.9E-15 1.3E-19 154.0 8.6 208 477-714 39-250 (317)
77 3g06_A SSPH2 (leucine-rich rep 99.6 1.9E-14 6.5E-19 161.2 14.5 212 475-718 43-277 (622)
78 3m19_A Variable lymphocyte rec 99.6 4.3E-14 1.5E-18 140.9 15.5 172 476-663 18-192 (251)
79 3oja_A Leucine-rich immune mol 99.6 5.4E-15 1.9E-19 162.1 9.7 191 492-712 32-225 (487)
80 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.5E-19 162.3 12.6 184 486-698 35-218 (605)
81 3o53_A Protein LRIM1, AGAP0063 99.5 4.5E-15 1.5E-19 153.6 8.2 188 494-711 34-224 (317)
82 2z7x_B TOLL-like receptor 1, v 99.5 3E-14 1E-18 158.4 15.3 122 497-623 3-126 (520)
83 1m9s_A Internalin B; cell inva 99.5 3.1E-15 1E-19 167.4 6.2 190 494-714 21-210 (605)
84 1ziw_A TOLL-like receptor 3; i 99.5 3E-14 1E-18 163.8 13.3 197 497-710 7-204 (680)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3.2E-14 1.1E-18 159.6 13.2 126 493-622 30-156 (562)
86 2z63_A TOLL-like receptor 4, v 99.5 2.5E-14 8.5E-19 161.0 12.0 207 491-715 322-532 (570)
87 2z81_A CD282 antigen, TOLL-lik 99.5 3.2E-14 1.1E-18 159.2 12.2 197 498-713 9-208 (549)
88 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 135.2 14.6 127 494-621 40-168 (229)
89 2ast_B S-phase kinase-associat 99.5 1E-14 3.6E-19 152.3 7.1 201 496-712 49-258 (336)
90 1wwl_A Monocyte differentiatio 99.5 1.8E-15 6.3E-20 156.1 1.1 200 496-712 65-285 (312)
91 4ezg_A Putative uncharacterize 99.5 9.1E-14 3.1E-18 132.9 12.9 143 475-621 47-190 (197)
92 1p9a_G Platelet glycoprotein I 99.5 1.1E-13 3.8E-18 140.8 12.8 157 489-662 50-207 (290)
93 3j0a_A TOLL-like receptor 5; m 99.5 1.1E-13 3.9E-18 162.5 13.9 198 497-712 7-215 (844)
94 2o6s_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 132.2 12.9 125 495-620 29-156 (208)
95 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.8E-18 145.8 11.4 176 497-687 21-200 (361)
96 2ca6_A RAN GTPase-activating p 99.5 3.7E-14 1.3E-18 151.2 7.7 213 490-714 56-316 (386)
97 4ay9_X Follicle-stimulating ho 99.5 9.7E-14 3.3E-18 145.6 10.8 221 476-718 13-240 (350)
98 4ay9_X Follicle-stimulating ho 99.5 6.6E-14 2.3E-18 146.9 9.1 213 476-710 34-255 (350)
99 3cvr_A Invasion plasmid antige 99.5 2E-13 6.8E-18 151.0 13.3 182 495-713 60-242 (571)
100 1fnn_A CDC6P, cell division co 99.5 6.2E-12 2.1E-16 134.0 24.5 320 126-467 17-385 (389)
101 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 8E-18 132.4 12.2 149 498-662 15-164 (220)
102 2v9t_B SLIT homolog 2 protein 99.5 4.5E-13 1.5E-17 130.4 13.8 144 476-621 15-161 (220)
103 2v1u_A Cell division control p 99.5 1.5E-12 5.1E-17 138.7 19.0 292 126-439 19-352 (387)
104 2qby_B CDC6 homolog 3, cell di 99.5 6.1E-12 2.1E-16 133.8 23.3 291 126-439 20-340 (384)
105 1xeu_A Internalin C; cellular 99.5 5.2E-13 1.8E-17 133.8 14.0 156 484-664 31-186 (263)
106 2o6s_A Variable lymphocyte rec 99.4 9.8E-13 3.4E-17 126.9 14.4 180 497-702 10-190 (208)
107 2v70_A SLIT-2, SLIT homolog 2 99.4 5.1E-13 1.7E-17 130.0 12.2 150 498-663 15-166 (220)
108 2je0_A Acidic leucine-rich nuc 99.4 2.9E-13 9.8E-18 123.0 9.7 125 493-620 16-148 (149)
109 2ca6_A RAN GTPase-activating p 99.4 1.1E-13 3.9E-18 147.3 7.8 213 489-713 27-286 (386)
110 2ell_A Acidic leucine-rich nuc 99.4 2.8E-13 9.5E-18 125.9 9.4 129 494-625 24-160 (168)
111 2v70_A SLIT-2, SLIT homolog 2 99.4 7.9E-13 2.7E-17 128.6 12.2 144 476-621 15-162 (220)
112 4g8a_A TOLL-like receptor 4; l 99.4 6E-13 2.1E-17 151.6 12.8 216 477-709 36-257 (635)
113 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 128.2 13.1 151 496-663 21-172 (229)
114 1a9n_A U2A', U2A'; complex (nu 99.4 3.7E-13 1.3E-17 126.1 8.9 131 488-622 13-150 (176)
115 2qby_A CDC6 homolog 1, cell di 99.4 2.2E-12 7.4E-17 137.4 15.9 289 126-438 20-348 (386)
116 2xot_A Amphoterin-induced prot 99.4 6.3E-13 2.2E-17 140.0 11.5 172 476-663 22-202 (361)
117 1xeu_A Internalin C; cellular 99.4 9.7E-14 3.3E-18 139.1 3.8 167 492-687 17-183 (263)
118 1jl5_A Outer protein YOPM; leu 99.4 2.6E-12 9E-17 139.3 15.3 131 477-621 136-266 (454)
119 4g8a_A TOLL-like receptor 4; l 99.4 1.8E-12 6E-17 147.7 14.0 126 489-615 71-200 (635)
120 1jl5_A Outer protein YOPM; leu 99.4 2.4E-12 8.4E-17 139.6 13.9 94 494-596 111-204 (454)
121 4glp_A Monocyte differentiatio 99.4 4.3E-13 1.5E-17 138.2 6.4 173 491-686 114-304 (310)
122 3goz_A Leucine-rich repeat-con 99.4 9.3E-13 3.2E-17 138.8 8.8 103 495-597 23-148 (362)
123 3goz_A Leucine-rich repeat-con 99.3 3.1E-13 1E-17 142.5 3.1 211 490-712 46-295 (362)
124 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.5E-16 117.2 13.2 122 497-621 13-135 (193)
125 1w8a_A SLIT protein; signaling 99.3 8.9E-12 3.1E-16 118.3 10.9 123 497-621 11-135 (192)
126 2ell_A Acidic leucine-rich nuc 99.3 1.6E-11 5.4E-16 113.9 12.3 128 476-605 28-164 (168)
127 2o6r_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 114.7 12.7 124 496-621 9-133 (177)
128 3cvr_A Invasion plasmid antige 99.3 7.7E-12 2.6E-16 138.3 11.5 190 476-699 63-252 (571)
129 1njg_A DNA polymerase III subu 99.3 3.6E-11 1.2E-15 118.9 14.7 197 126-333 23-231 (250)
130 1z7x_W Ribonuclease inhibitor; 99.3 1.8E-12 6.3E-17 141.5 5.7 210 490-712 166-409 (461)
131 4b8c_D Glucose-repressible alc 99.3 7.3E-12 2.5E-16 143.7 10.3 114 532-663 216-329 (727)
132 1a9n_A U2A', U2A'; complex (nu 99.3 1E-11 3.5E-16 116.2 9.5 121 476-597 23-150 (176)
133 2chg_A Replication factor C sm 99.3 5E-11 1.7E-15 116.1 14.1 183 126-330 17-204 (226)
134 1z7x_W Ribonuclease inhibitor; 99.2 3.3E-12 1.1E-16 139.5 5.4 132 490-622 109-266 (461)
135 2je0_A Acidic leucine-rich nuc 99.2 3.4E-11 1.1E-15 109.2 10.8 121 476-596 21-149 (149)
136 2wfh_A SLIT homolog 2 protein 99.2 4.4E-11 1.5E-15 113.5 11.8 121 476-597 14-136 (193)
137 1w8a_A SLIT protein; signaling 99.2 3.7E-11 1.3E-15 114.0 11.1 121 476-597 12-136 (192)
138 1dce_A Protein (RAB geranylger 99.2 2.9E-11 1E-15 134.3 11.5 120 495-618 442-566 (567)
139 2o6r_A Variable lymphocyte rec 99.2 1.2E-10 3.9E-15 109.1 12.3 120 478-598 13-135 (177)
140 3ogk_B Coronatine-insensitive 99.2 3.5E-11 1.2E-15 135.8 8.5 129 492-623 162-304 (592)
141 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.3E-15 107.2 11.5 107 497-605 15-122 (174)
142 3g39_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 105.9 11.3 101 496-597 11-112 (170)
143 1sxj_B Activator 1 37 kDa subu 99.1 3E-10 1E-14 117.5 12.4 186 126-333 21-213 (323)
144 3ogk_B Coronatine-insensitive 99.1 1.2E-10 4.2E-15 131.3 9.9 220 491-713 189-448 (592)
145 4b8c_D Glucose-repressible alc 99.1 1.1E-10 3.7E-15 133.9 9.2 118 489-609 219-337 (727)
146 1dce_A Protein (RAB geranylger 99.1 2.7E-10 9.3E-15 126.5 11.8 121 497-630 426-548 (567)
147 1hqc_A RUVB; extended AAA-ATPa 99.0 5.7E-09 2E-13 107.9 17.9 269 125-437 11-324 (324)
148 2r9u_A Variable lymphocyte rec 99.0 9.4E-10 3.2E-14 102.3 9.7 100 518-621 14-114 (174)
149 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.8E-14 101.5 9.6 101 517-621 10-111 (170)
150 1ds9_A Outer arm dynein; leuci 99.0 3.9E-11 1.3E-15 114.5 -1.0 129 518-665 25-155 (198)
151 3sb4_A Hypothetical leucine ri 99.0 7.5E-10 2.6E-14 114.8 8.5 194 493-707 48-327 (329)
152 1ds9_A Outer arm dynein; leuci 99.0 1.5E-11 5E-16 117.5 -4.8 104 490-596 44-149 (198)
153 2p1m_B Transport inhibitor res 99.0 5.9E-10 2E-14 125.8 7.4 215 492-710 103-347 (594)
154 1iqp_A RFCS; clamp loader, ext 98.9 1.8E-09 6.3E-14 111.7 10.3 186 125-332 24-214 (327)
155 2p1m_B Transport inhibitor res 98.9 9.1E-10 3.1E-14 124.2 7.8 82 492-574 154-245 (594)
156 2ifg_A High affinity nerve gro 98.9 4.2E-09 1.4E-13 110.1 9.7 100 498-597 12-113 (347)
157 3qfl_A MLA10; coiled-coil, (CC 98.9 8.2E-09 2.8E-13 87.5 9.1 62 9-70 21-83 (115)
158 2chq_A Replication factor C sm 98.8 2.8E-08 9.6E-13 102.4 13.4 179 126-329 17-203 (319)
159 3te6_A Regulatory protein SIR3 98.8 3.5E-08 1.2E-12 99.7 13.4 169 128-299 22-213 (318)
160 1jr3_A DNA polymerase III subu 98.7 9.2E-08 3.2E-12 100.9 15.2 193 126-330 16-221 (373)
161 1jbk_A CLPB protein; beta barr 98.7 3.5E-08 1.2E-12 93.2 8.4 47 125-171 21-67 (195)
162 3bos_A Putative DNA replicatio 98.7 4.7E-08 1.6E-12 96.1 9.3 172 126-330 28-217 (242)
163 2ifg_A High affinity nerve gro 98.7 5.2E-08 1.8E-12 101.7 10.0 99 519-621 11-112 (347)
164 3sb4_A Hypothetical leucine ri 98.7 1.1E-08 3.9E-13 105.8 4.9 200 492-711 23-307 (329)
165 3un9_A NLR family member X1; l 98.6 1.4E-08 4.8E-13 106.6 3.3 159 494-663 72-252 (372)
166 3h4m_A Proteasome-activating n 98.6 2.3E-07 7.9E-12 93.7 12.1 176 126-329 17-230 (285)
167 1sxj_D Activator 1 41 kDa subu 98.6 2.6E-07 8.8E-12 96.6 11.8 194 125-329 36-234 (353)
168 3pvs_A Replication-associated 98.5 1.4E-06 4.8E-11 93.1 17.0 176 124-329 24-214 (447)
169 4fdw_A Leucine rich hypothetic 98.5 2.8E-07 9.6E-12 97.6 11.4 198 489-710 175-379 (401)
170 1sxj_A Activator 1 95 kDa subu 98.5 8.3E-07 2.8E-11 97.4 15.5 190 126-333 39-256 (516)
171 4fdw_A Leucine rich hypothetic 98.5 4.1E-07 1.4E-11 96.4 12.3 37 673-712 320-356 (401)
172 3un9_A NLR family member X1; l 98.5 3.6E-08 1.2E-12 103.5 3.1 172 515-699 71-261 (372)
173 1d2n_A N-ethylmaleimide-sensit 98.5 6.9E-06 2.4E-10 82.1 19.2 192 126-352 33-264 (272)
174 3pfi_A Holliday junction ATP-d 98.5 1.3E-05 4.4E-10 83.0 21.5 171 126-330 29-227 (338)
175 2z4s_A Chromosomal replication 98.4 5.7E-07 2E-11 96.4 9.9 180 126-328 105-304 (440)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.4 2.2E-06 7.4E-11 85.3 13.4 180 126-330 6-222 (262)
177 1sxj_E Activator 1 40 kDa subu 98.4 1.2E-06 4.1E-11 91.5 11.4 194 126-329 14-236 (354)
178 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.2E-05 7.4E-10 80.4 19.9 180 126-331 12-224 (322)
179 3d8b_A Fidgetin-like protein 1 98.4 8.5E-06 2.9E-10 84.9 17.1 179 126-331 84-296 (357)
180 3uk6_A RUVB-like 2; hexameric 98.3 2.1E-06 7.2E-11 90.2 11.9 193 125-328 43-301 (368)
181 3syl_A Protein CBBX; photosynt 98.3 1.3E-06 4.5E-11 89.3 10.0 152 127-299 32-219 (309)
182 3eie_A Vacuolar protein sortin 98.3 5.2E-06 1.8E-10 85.3 14.2 179 126-331 18-229 (322)
183 3u61_B DNA polymerase accessor 98.3 4.7E-06 1.6E-10 85.8 14.0 182 125-333 25-220 (324)
184 1sxj_C Activator 1 40 kDa subu 98.3 2.8E-06 9.7E-11 88.0 11.4 172 126-325 25-207 (340)
185 2qp9_X Vacuolar protein sortin 98.3 8.4E-06 2.9E-10 84.7 14.5 179 126-331 51-262 (355)
186 3vfd_A Spastin; ATPase, microt 98.3 2.4E-05 8.4E-10 82.5 18.2 179 126-331 115-327 (389)
187 3b9p_A CG5977-PA, isoform A; A 98.2 3.6E-05 1.2E-09 78.0 18.4 177 126-331 21-234 (297)
188 2p65_A Hypothetical protein PF 98.2 1.3E-06 4.3E-11 81.9 6.7 47 125-171 21-67 (187)
189 2zan_A Vacuolar protein sortin 98.2 3.6E-05 1.2E-09 82.5 18.8 180 126-331 134-346 (444)
190 1l8q_A Chromosomal replication 98.2 1E-05 3.4E-10 83.3 13.2 174 126-325 11-203 (324)
191 3e4g_A ATP synthase subunit S, 98.2 1.8E-06 6.1E-11 78.8 6.6 41 676-716 114-154 (176)
192 3cf0_A Transitional endoplasmi 98.2 4E-05 1.4E-09 77.7 16.5 173 126-325 15-223 (301)
193 1a5t_A Delta prime, HOLB; zinc 98.2 2.3E-05 8E-10 80.7 14.8 171 131-329 7-204 (334)
194 2ra8_A Uncharacterized protein 98.1 5.7E-06 2E-10 85.9 9.8 79 514-595 137-227 (362)
195 3pxg_A Negative regulator of g 98.1 1.7E-05 5.6E-10 85.8 13.5 151 125-299 179-340 (468)
196 4b4t_J 26S protease regulatory 98.1 5.1E-05 1.7E-09 78.5 16.2 170 126-323 148-354 (405)
197 2ra8_A Uncharacterized protein 98.1 7.6E-06 2.6E-10 85.0 9.1 159 491-662 136-319 (362)
198 2r62_A Cell division protease 98.0 1.8E-05 6.3E-10 78.8 10.7 173 125-324 10-219 (268)
199 4b4t_L 26S protease subunit RP 98.0 6.7E-05 2.3E-09 79.0 14.8 170 126-323 181-387 (437)
200 1qvr_A CLPB protein; coiled co 98.0 1.5E-05 5E-10 93.1 10.3 155 125-297 169-345 (854)
201 4b4t_M 26S protease regulatory 98.0 7.6E-05 2.6E-09 78.5 14.3 170 126-323 181-387 (434)
202 3rw6_A Nuclear RNA export fact 98.0 2.5E-06 8.7E-11 83.9 2.8 83 537-620 167-259 (267)
203 2gno_A DNA polymerase III, gam 97.9 3.3E-05 1.1E-09 78.1 10.8 147 130-297 1-152 (305)
204 4b4t_H 26S protease regulatory 97.9 9.1E-05 3.1E-09 77.7 13.5 170 126-323 209-415 (467)
205 2w58_A DNAI, primosome compone 97.9 1.7E-05 5.8E-10 75.3 7.3 121 125-266 24-158 (202)
206 3n70_A Transport activator; si 97.9 1.2E-05 4.3E-10 71.7 5.3 45 127-171 2-48 (145)
207 3hu3_A Transitional endoplasmi 97.9 0.00012 4.1E-09 79.0 13.9 177 126-329 204-414 (489)
208 4b4t_I 26S protease regulatory 97.9 0.00012 4.1E-09 76.0 13.3 170 126-323 182-388 (437)
209 1lv7_A FTSH; alpha/beta domain 97.8 0.00024 8.2E-09 70.1 14.7 177 126-329 12-224 (257)
210 3pxi_A Negative regulator of g 97.8 0.00015 5.2E-09 83.5 14.8 153 125-299 179-340 (758)
211 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.8E-10 75.4 4.2 82 515-596 64-160 (185)
212 4b4t_K 26S protease regulatory 97.8 0.00035 1.2E-08 73.4 16.0 170 126-323 172-379 (428)
213 3ec2_A DNA replication protein 97.8 1.2E-05 4.2E-10 74.7 4.4 121 126-266 10-142 (180)
214 3e4g_A ATP synthase subunit S, 97.8 1.6E-05 5.6E-10 72.4 4.9 87 516-602 61-154 (176)
215 1in4_A RUVB, holliday junction 97.7 0.00061 2.1E-08 70.0 16.5 170 126-329 25-222 (334)
216 2ce7_A Cell division protein F 97.7 0.00031 1.1E-08 75.1 14.2 171 126-323 16-221 (476)
217 1ofh_A ATP-dependent HSL prote 97.7 0.00021 7.1E-09 72.7 12.6 46 126-171 15-74 (310)
218 3rw6_A Nuclear RNA export fact 97.7 6.6E-05 2.3E-09 73.8 7.8 78 515-594 169-258 (267)
219 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00032 1.1E-08 80.9 13.8 155 125-297 185-362 (758)
220 4fcw_A Chaperone protein CLPB; 97.6 0.00017 6E-09 73.4 10.2 60 126-188 17-85 (311)
221 2c9o_A RUVB-like 1; hexameric 97.6 0.00057 2E-08 73.5 13.5 46 126-171 37-87 (456)
222 2bjv_A PSP operon transcriptio 97.5 0.00022 7.5E-09 70.8 9.0 46 126-171 6-53 (265)
223 1io0_A Tropomodulin; LRR prote 97.5 9.5E-05 3.2E-09 68.9 5.8 20 645-664 146-165 (185)
224 3t15_A Ribulose bisphosphate c 97.5 0.00097 3.3E-08 67.0 12.8 26 146-171 35-60 (293)
225 1ojl_A Transcriptional regulat 97.4 0.00042 1.4E-08 70.1 9.7 46 126-171 2-49 (304)
226 3cf2_A TER ATPase, transitiona 97.4 0.00034 1.2E-08 79.3 9.4 169 127-323 205-407 (806)
227 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0022 7.5E-08 69.0 15.1 168 125-323 30-236 (499)
228 2x8a_A Nuclear valosin-contain 97.4 0.0027 9.1E-08 63.1 14.7 149 126-298 10-192 (274)
229 4fs7_A Uncharacterized protein 97.3 0.00037 1.3E-08 73.6 8.4 195 489-710 157-375 (394)
230 4fs7_A Uncharacterized protein 97.3 0.0007 2.4E-08 71.4 10.4 123 489-617 66-213 (394)
231 2kjq_A DNAA-related protein; s 97.3 0.00014 4.8E-09 64.9 4.0 26 146-171 35-60 (149)
232 1ixz_A ATP-dependent metallopr 97.3 0.0013 4.5E-08 64.6 11.0 170 126-323 16-221 (254)
233 3m6a_A ATP-dependent protease 97.2 0.0027 9.1E-08 69.7 14.3 45 127-171 82-132 (543)
234 3pxi_A Negative regulator of g 97.2 0.00046 1.6E-08 79.5 7.9 60 126-188 491-559 (758)
235 1iy2_A ATP-dependent metallopr 97.2 0.0037 1.3E-07 62.3 13.4 170 126-323 40-245 (278)
236 3co5_A Putative two-component 97.2 0.00021 7E-09 63.4 3.6 45 127-171 5-51 (143)
237 1ypw_A Transitional endoplasmi 97.1 0.0022 7.4E-08 73.9 12.5 151 126-300 204-388 (806)
238 2cvh_A DNA repair and recombin 96.9 0.0022 7.4E-08 61.3 8.4 88 146-240 19-116 (220)
239 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0006 2.1E-08 68.1 4.3 68 148-240 124-193 (331)
240 1n0w_A DNA repair protein RAD5 96.7 0.0045 1.6E-07 60.1 8.7 92 147-240 24-130 (243)
241 3hr8_A Protein RECA; alpha and 96.6 0.0046 1.6E-07 63.3 8.9 86 147-240 61-150 (356)
242 4h09_A Hypothetical leucine ri 96.5 0.0089 3E-07 62.5 10.5 126 490-620 213-341 (379)
243 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0038 1.3E-07 71.9 7.7 46 126-171 458-512 (758)
244 1qvr_A CLPB protein; coiled co 96.5 0.0031 1.1E-07 73.5 7.0 45 127-171 559-612 (854)
245 2qgz_A Helicase loader, putati 96.5 0.0025 8.5E-08 64.4 5.4 46 126-171 124-176 (308)
246 2zr9_A Protein RECA, recombina 96.4 0.0079 2.7E-07 61.8 9.1 87 146-240 60-150 (349)
247 1v5w_A DMC1, meiotic recombina 96.4 0.014 4.8E-07 59.9 10.8 58 146-205 121-182 (343)
248 2z43_A DNA repair and recombin 96.4 0.01 3.5E-07 60.4 9.7 91 147-239 107-213 (324)
249 4gt6_A Cell surface protein; l 96.4 0.011 3.9E-07 62.1 10.3 80 536-619 261-341 (394)
250 3cf2_A TER ATPase, transitiona 96.4 0.0073 2.5E-07 68.5 9.0 169 126-322 477-682 (806)
251 2b8t_A Thymidine kinase; deoxy 96.4 0.0012 4E-08 63.0 2.1 112 147-267 12-126 (223)
252 1g5t_A COB(I)alamin adenosyltr 96.4 0.002 6.7E-08 59.5 3.6 115 147-268 28-164 (196)
253 1xp8_A RECA protein, recombina 96.3 0.011 3.8E-07 61.0 9.1 86 147-240 74-163 (366)
254 1u94_A RECA protein, recombina 96.3 0.009 3.1E-07 61.4 8.5 87 146-240 62-152 (356)
255 3io5_A Recombination and repai 96.3 0.01 3.6E-07 58.9 8.4 88 148-241 29-123 (333)
256 1rz3_A Hypothetical protein rb 96.3 0.004 1.4E-07 58.6 5.3 42 130-171 2-46 (201)
257 4gt6_A Cell surface protein; l 96.2 0.012 4E-07 61.9 9.4 105 512-621 261-366 (394)
258 1jr3_D DNA polymerase III, del 96.2 0.033 1.1E-06 57.2 12.3 161 140-328 11-183 (343)
259 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.015 5E-07 56.0 8.6 47 147-198 23-69 (235)
260 3c8u_A Fructokinase; YP_612366 96.1 0.0054 1.8E-07 58.0 5.1 39 133-171 6-46 (208)
261 2i1q_A DNA repair and recombin 95.9 0.016 5.5E-07 59.0 8.1 93 146-239 97-214 (322)
262 3dm5_A SRP54, signal recogniti 95.9 0.041 1.4E-06 57.8 11.3 26 146-171 99-124 (443)
263 2r44_A Uncharacterized protein 95.8 0.0063 2.1E-07 62.3 4.6 44 126-171 27-70 (331)
264 3kb2_A SPBC2 prophage-derived 95.8 0.0052 1.8E-07 56.0 3.4 24 148-171 2-25 (173)
265 1qhx_A CPT, protein (chloramph 95.7 0.0053 1.8E-07 56.4 3.5 24 148-171 4-27 (178)
266 1g8p_A Magnesium-chelatase 38 95.7 0.0046 1.6E-07 63.9 3.1 46 126-171 24-69 (350)
267 3sr0_A Adenylate kinase; phosp 95.7 0.023 7.8E-07 53.4 7.7 23 149-171 2-24 (206)
268 3lw7_A Adenylate kinase relate 95.6 0.0059 2E-07 55.8 3.3 23 148-171 2-24 (179)
269 3lda_A DNA repair protein RAD5 95.6 0.043 1.5E-06 57.2 10.1 93 147-240 178-284 (400)
270 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0088 3E-07 64.4 4.9 44 126-171 22-65 (500)
271 3hws_A ATP-dependent CLP prote 95.6 0.012 4.1E-07 61.1 5.8 44 128-171 17-75 (363)
272 1pzn_A RAD51, DNA repair and r 95.6 0.03 1E-06 57.4 8.7 93 146-240 130-242 (349)
273 3vaa_A Shikimate kinase, SK; s 95.5 0.0074 2.5E-07 56.6 3.6 26 146-171 24-49 (199)
274 4h09_A Hypothetical leucine ri 95.5 0.029 1E-06 58.5 8.6 118 489-611 235-355 (379)
275 3ice_A Transcription terminati 95.5 0.011 3.7E-07 60.3 4.8 52 137-189 163-215 (422)
276 1zp6_A Hypothetical protein AT 95.5 0.0073 2.5E-07 56.2 3.4 25 147-171 9-33 (191)
277 2ga8_A Hypothetical 39.9 kDa p 95.5 0.014 4.8E-07 59.2 5.5 43 129-171 2-48 (359)
278 1kgd_A CASK, peripheral plasma 95.5 0.0077 2.6E-07 55.5 3.4 24 148-171 6-29 (180)
279 2orw_A Thymidine kinase; TMTK, 95.4 0.0013 4.3E-08 61.0 -2.0 24 148-171 4-27 (184)
280 2px0_A Flagellar biosynthesis 95.4 0.037 1.3E-06 55.2 8.6 86 146-237 104-190 (296)
281 3bh0_A DNAB-like replicative h 95.4 0.047 1.6E-06 55.2 9.4 53 146-203 67-119 (315)
282 1ly1_A Polynucleotide kinase; 95.4 0.0084 2.9E-07 55.0 3.6 22 148-169 3-24 (181)
283 1um8_A ATP-dependent CLP prote 95.4 0.014 4.9E-07 60.8 5.8 45 127-171 22-96 (376)
284 1kag_A SKI, shikimate kinase I 95.4 0.007 2.4E-07 55.2 2.9 24 148-171 5-28 (173)
285 3trf_A Shikimate kinase, SK; a 95.4 0.0082 2.8E-07 55.5 3.4 25 147-171 5-29 (185)
286 1zuh_A Shikimate kinase; alpha 95.3 0.0094 3.2E-07 54.1 3.5 26 146-171 6-31 (168)
287 3uie_A Adenylyl-sulfate kinase 95.3 0.011 3.6E-07 55.6 3.8 27 145-171 23-49 (200)
288 2ck3_D ATP synthase subunit be 95.3 0.13 4.3E-06 54.2 12.1 64 137-202 142-207 (482)
289 3rfe_A Platelet glycoprotein I 95.2 0.029 9.8E-07 48.3 6.1 53 498-551 12-66 (130)
290 1nks_A Adenylate kinase; therm 95.2 0.011 3.6E-07 55.0 3.6 24 148-171 2-25 (194)
291 3kl4_A SRP54, signal recogniti 95.2 0.08 2.7E-06 55.6 10.5 26 146-171 96-121 (433)
292 1ex7_A Guanylate kinase; subst 95.2 0.0078 2.7E-07 55.5 2.5 24 148-171 2-25 (186)
293 1vma_A Cell division protein F 95.2 0.046 1.6E-06 54.8 8.3 90 146-239 103-196 (306)
294 3t61_A Gluconokinase; PSI-biol 95.2 0.0085 2.9E-07 56.3 2.8 25 147-171 18-42 (202)
295 4eun_A Thermoresistant glucoki 95.2 0.011 3.9E-07 55.4 3.6 26 146-171 28-53 (200)
296 2hf9_A Probable hydrogenase ni 95.2 0.015 5.2E-07 55.6 4.7 38 134-171 25-62 (226)
297 3e70_C DPA, signal recognition 95.1 0.1 3.6E-06 52.7 10.9 27 145-171 127-153 (328)
298 2yvu_A Probable adenylyl-sulfa 95.1 0.013 4.6E-07 54.1 4.0 26 146-171 12-37 (186)
299 2rhm_A Putative kinase; P-loop 95.1 0.012 4.2E-07 54.6 3.7 25 147-171 5-29 (193)
300 3iij_A Coilin-interacting nucl 95.1 0.01 3.5E-07 54.6 3.0 25 147-171 11-35 (180)
301 1kht_A Adenylate kinase; phosp 95.1 0.012 4E-07 54.7 3.5 24 148-171 4-27 (192)
302 1sky_E F1-ATPase, F1-ATP synth 95.1 0.03 1E-06 59.0 6.8 90 148-239 152-255 (473)
303 1knq_A Gluconate kinase; ALFA/ 95.1 0.012 4.3E-07 53.7 3.5 25 147-171 8-32 (175)
304 3tr0_A Guanylate kinase, GMP k 95.1 0.012 3.9E-07 55.5 3.4 24 148-171 8-31 (205)
305 2ze6_A Isopentenyl transferase 95.1 0.012 4.2E-07 57.4 3.6 24 148-171 2-25 (253)
306 1via_A Shikimate kinase; struc 95.0 0.01 3.6E-07 54.2 2.9 24 148-171 5-28 (175)
307 2dr3_A UPF0273 protein PH0284; 95.0 0.048 1.6E-06 52.8 7.9 47 147-198 23-69 (247)
308 3umf_A Adenylate kinase; rossm 95.0 0.014 4.8E-07 55.3 3.7 26 146-171 28-53 (217)
309 3tau_A Guanylate kinase, GMP k 95.0 0.014 4.7E-07 55.2 3.7 26 146-171 7-32 (208)
310 1odf_A YGR205W, hypothetical 3 95.0 0.026 8.7E-07 56.3 5.8 27 145-171 29-55 (290)
311 2bdt_A BH3686; alpha-beta prot 95.0 0.013 4.6E-07 54.3 3.5 23 148-170 3-25 (189)
312 3a00_A Guanylate kinase, GMP k 95.0 0.011 3.6E-07 54.9 2.8 24 148-171 2-25 (186)
313 1ye8_A Protein THEP1, hypothet 95.0 0.013 4.6E-07 53.7 3.4 23 149-171 2-24 (178)
314 2qor_A Guanylate kinase; phosp 94.9 0.012 4E-07 55.5 3.0 25 147-171 12-36 (204)
315 2c95_A Adenylate kinase 1; tra 94.9 0.014 4.9E-07 54.3 3.6 26 146-171 8-33 (196)
316 2wsm_A Hydrogenase expression/ 94.9 0.016 5.5E-07 55.2 4.1 40 132-171 15-54 (221)
317 1y63_A LMAJ004144AAA protein; 94.9 0.014 4.9E-07 53.8 3.5 24 147-170 10-33 (184)
318 1tev_A UMP-CMP kinase; ploop, 94.9 0.015 5E-07 54.2 3.7 25 147-171 3-27 (196)
319 2bbw_A Adenylate kinase 4, AK4 94.9 0.014 4.9E-07 56.7 3.7 26 146-171 26-51 (246)
320 3rfe_A Platelet glycoprotein I 94.9 0.043 1.5E-06 47.2 6.3 52 544-597 12-65 (130)
321 2jaq_A Deoxyguanosine kinase; 94.9 0.014 4.8E-07 54.8 3.5 23 149-171 2-24 (205)
322 1gvn_B Zeta; postsegregational 94.9 0.022 7.5E-07 56.7 5.1 26 146-171 32-57 (287)
323 1ukz_A Uridylate kinase; trans 94.9 0.016 5.5E-07 54.4 3.8 26 146-171 14-39 (203)
324 1cke_A CK, MSSA, protein (cyti 94.9 0.014 4.9E-07 55.9 3.5 24 148-171 6-29 (227)
325 2iyv_A Shikimate kinase, SK; t 94.9 0.011 3.9E-07 54.5 2.6 24 148-171 3-26 (184)
326 3jvv_A Twitching mobility prot 94.8 0.012 4.1E-07 60.5 3.0 126 129-270 109-234 (356)
327 1g41_A Heat shock protein HSLU 94.8 0.018 6.1E-07 60.6 4.3 46 126-171 15-74 (444)
328 1uf9_A TT1252 protein; P-loop, 94.8 0.017 5.9E-07 54.1 3.9 26 145-170 6-31 (203)
329 3asz_A Uridine kinase; cytidin 94.8 0.016 5.5E-07 54.8 3.6 26 146-171 5-30 (211)
330 2if2_A Dephospho-COA kinase; a 94.8 0.015 5.1E-07 54.7 3.4 22 148-169 2-23 (204)
331 2ffh_A Protein (FFH); SRP54, s 94.8 0.14 4.8E-06 53.6 11.1 25 147-171 98-122 (425)
332 3cm0_A Adenylate kinase; ATP-b 94.8 0.016 5.6E-07 53.4 3.6 24 148-171 5-28 (186)
333 4a1f_A DNAB helicase, replicat 94.8 0.23 7.9E-06 50.3 12.3 52 147-203 46-97 (338)
334 2j41_A Guanylate kinase; GMP, 94.8 0.015 5.1E-07 54.8 3.3 25 147-171 6-30 (207)
335 2bwj_A Adenylate kinase 5; pho 94.8 0.016 5.5E-07 54.1 3.5 25 147-171 12-36 (199)
336 1fx0_B ATP synthase beta chain 94.8 0.08 2.7E-06 55.9 9.0 100 138-239 155-276 (498)
337 1j8m_F SRP54, signal recogniti 94.7 0.12 4.2E-06 51.5 10.0 89 147-238 98-189 (297)
338 1lvg_A Guanylate kinase, GMP k 94.7 0.014 4.7E-07 54.7 2.8 24 148-171 5-28 (198)
339 4gp7_A Metallophosphoesterase; 94.7 0.015 5.2E-07 52.9 3.1 22 147-168 9-30 (171)
340 1e6c_A Shikimate kinase; phosp 94.7 0.015 5E-07 53.0 2.9 24 148-171 3-26 (173)
341 2qt1_A Nicotinamide riboside k 94.7 0.018 6.3E-07 54.2 3.7 26 146-171 20-45 (207)
342 1jjv_A Dephospho-COA kinase; P 94.7 0.016 5.4E-07 54.6 3.2 22 148-169 3-24 (206)
343 2vli_A Antibiotic resistance p 94.7 0.013 4.6E-07 53.8 2.6 25 147-171 5-29 (183)
344 3ney_A 55 kDa erythrocyte memb 94.6 0.019 6.5E-07 53.3 3.4 26 146-171 18-43 (197)
345 1qf9_A UMP/CMP kinase, protein 94.6 0.019 6.5E-07 53.2 3.6 25 147-171 6-30 (194)
346 1tue_A Replication protein E1; 94.6 0.029 1E-06 51.9 4.6 39 133-171 43-82 (212)
347 3cmu_A Protein RECA, recombina 94.6 0.058 2E-06 66.8 8.6 86 146-239 1426-1515(2050)
348 2plr_A DTMP kinase, probable t 94.6 0.019 6.6E-07 54.2 3.6 24 148-171 5-28 (213)
349 2pt5_A Shikimate kinase, SK; a 94.6 0.019 6.6E-07 51.9 3.5 23 149-171 2-24 (168)
350 2p5t_B PEZT; postsegregational 94.6 0.024 8.3E-07 55.3 4.4 26 146-171 31-56 (253)
351 2cdn_A Adenylate kinase; phosp 94.6 0.019 6.5E-07 53.8 3.5 25 147-171 20-44 (201)
352 2grj_A Dephospho-COA kinase; T 94.5 0.022 7.5E-07 52.9 3.7 26 146-171 11-36 (192)
353 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.021 7.1E-07 56.1 3.8 25 147-171 4-28 (260)
354 1xjc_A MOBB protein homolog; s 94.5 0.022 7.4E-07 51.4 3.5 26 146-171 3-28 (169)
355 4akg_A Glutathione S-transfera 94.5 0.12 4E-06 66.5 11.2 79 148-239 1268-1346(2695)
356 2xxa_A Signal recognition part 94.5 0.2 6.7E-06 52.8 11.4 26 146-171 99-124 (433)
357 3tlx_A Adenylate kinase 2; str 94.5 0.032 1.1E-06 54.1 5.0 26 146-171 28-53 (243)
358 1znw_A Guanylate kinase, GMP k 94.5 0.019 6.6E-07 54.1 3.3 25 147-171 20-44 (207)
359 2pbr_A DTMP kinase, thymidylat 94.5 0.02 7E-07 53.1 3.4 23 149-171 2-24 (195)
360 3fb4_A Adenylate kinase; psych 94.4 0.021 7.1E-07 54.2 3.4 23 149-171 2-24 (216)
361 1uj2_A Uridine-cytidine kinase 94.4 0.024 8.1E-07 55.4 3.8 26 146-171 21-46 (252)
362 4e22_A Cytidylate kinase; P-lo 94.4 0.022 7.5E-07 55.6 3.5 26 146-171 26-51 (252)
363 4a74_A DNA repair and recombin 94.4 0.075 2.6E-06 50.8 7.3 43 147-189 25-70 (231)
364 1htw_A HI0065; nucleotide-bind 94.4 0.024 8.1E-07 50.8 3.4 26 146-171 32-57 (158)
365 3aez_A Pantothenate kinase; tr 94.3 0.024 8.1E-07 57.2 3.7 27 145-171 88-114 (312)
366 1zd8_A GTP:AMP phosphotransfer 94.3 0.023 7.7E-07 54.5 3.5 25 147-171 7-31 (227)
367 2wwf_A Thymidilate kinase, put 94.3 0.024 8.2E-07 53.6 3.6 25 147-171 10-34 (212)
368 3dl0_A Adenylate kinase; phosp 94.3 0.023 7.7E-07 54.0 3.4 23 149-171 2-24 (216)
369 3tqc_A Pantothenate kinase; bi 94.3 0.033 1.1E-06 56.1 4.7 43 129-171 70-116 (321)
370 1z6g_A Guanylate kinase; struc 94.3 0.018 6.3E-07 54.8 2.7 25 147-171 23-47 (218)
371 1aky_A Adenylate kinase; ATP:A 94.3 0.025 8.7E-07 53.8 3.7 25 147-171 4-28 (220)
372 2jeo_A Uridine-cytidine kinase 94.3 0.027 9.1E-07 54.7 3.8 26 146-171 24-49 (245)
373 1nn5_A Similar to deoxythymidy 94.2 0.026 8.8E-07 53.4 3.6 25 147-171 9-33 (215)
374 3fwy_A Light-independent proto 94.2 0.024 8.4E-07 57.1 3.6 40 145-187 46-85 (314)
375 2z0h_A DTMP kinase, thymidylat 94.2 0.026 8.8E-07 52.6 3.4 23 149-171 2-24 (197)
376 1s96_A Guanylate kinase, GMP k 94.1 0.026 9E-07 53.6 3.4 25 147-171 16-40 (219)
377 1zak_A Adenylate kinase; ATP:A 94.1 0.025 8.5E-07 54.0 3.2 25 147-171 5-29 (222)
378 2v54_A DTMP kinase, thymidylat 94.0 0.029 9.8E-07 52.6 3.4 24 148-171 5-28 (204)
379 3k1j_A LON protease, ATP-depen 94.0 0.068 2.3E-06 59.4 6.9 44 126-171 41-84 (604)
380 2f1r_A Molybdopterin-guanine d 94.0 0.02 7E-07 51.9 2.2 24 148-171 3-26 (171)
381 1gtv_A TMK, thymidylate kinase 94.0 0.016 5.6E-07 54.8 1.6 23 149-171 2-24 (214)
382 2pez_A Bifunctional 3'-phospho 93.9 0.034 1.2E-06 50.9 3.5 25 147-171 5-29 (179)
383 3r20_A Cytidylate kinase; stru 93.9 0.033 1.1E-06 53.2 3.5 25 147-171 9-33 (233)
384 1ls1_A Signal recognition part 93.8 0.16 5.5E-06 50.6 8.6 89 147-238 98-189 (295)
385 2i3b_A HCR-ntpase, human cance 93.8 0.029 1E-06 51.9 2.8 24 148-171 2-25 (189)
386 1m7g_A Adenylylsulfate kinase; 93.8 0.037 1.2E-06 52.3 3.6 26 146-171 24-49 (211)
387 1rj9_A FTSY, signal recognitio 93.7 0.035 1.2E-06 55.6 3.6 26 146-171 101-126 (304)
388 2onk_A Molybdate/tungstate ABC 93.7 0.036 1.2E-06 53.5 3.5 26 145-171 23-48 (240)
389 2j37_W Signal recognition part 93.7 0.35 1.2E-05 51.9 11.5 26 146-171 100-125 (504)
390 3ake_A Cytidylate kinase; CMP 93.7 0.035 1.2E-06 52.1 3.4 23 149-171 4-26 (208)
391 2ehv_A Hypothetical protein PH 93.7 0.033 1.1E-06 54.1 3.3 24 146-169 29-52 (251)
392 2f6r_A COA synthase, bifunctio 93.7 0.038 1.3E-06 54.9 3.7 24 146-169 74-97 (281)
393 1np6_A Molybdopterin-guanine d 93.7 0.04 1.4E-06 50.1 3.5 25 147-171 6-30 (174)
394 3nwj_A ATSK2; P loop, shikimat 93.7 0.03 1E-06 54.3 2.8 24 148-171 49-72 (250)
395 3d3q_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 55.9 3.6 24 148-171 8-31 (340)
396 1e4v_A Adenylate kinase; trans 93.6 0.037 1.3E-06 52.4 3.4 23 149-171 2-24 (214)
397 3lnc_A Guanylate kinase, GMP k 93.6 0.024 8.1E-07 54.5 2.1 25 147-171 27-52 (231)
398 1vht_A Dephospho-COA kinase; s 93.6 0.04 1.4E-06 52.3 3.7 23 147-169 4-26 (218)
399 3be4_A Adenylate kinase; malar 93.6 0.038 1.3E-06 52.5 3.5 24 148-171 6-29 (217)
400 2xb4_A Adenylate kinase; ATP-b 93.6 0.039 1.3E-06 52.7 3.5 23 149-171 2-24 (223)
401 1sq5_A Pantothenate kinase; P- 93.6 0.065 2.2E-06 54.0 5.3 27 145-171 78-104 (308)
402 3tif_A Uncharacterized ABC tra 93.5 0.032 1.1E-06 53.7 2.7 26 146-171 30-55 (235)
403 3b85_A Phosphate starvation-in 93.5 0.033 1.1E-06 52.5 2.7 23 148-170 23-45 (208)
404 2pcj_A ABC transporter, lipopr 93.5 0.033 1.1E-06 53.2 2.7 25 147-171 30-54 (224)
405 1ak2_A Adenylate kinase isoenz 93.4 0.048 1.6E-06 52.5 3.8 25 147-171 16-40 (233)
406 1a7j_A Phosphoribulokinase; tr 93.4 0.028 9.5E-07 56.1 2.1 26 146-171 4-29 (290)
407 1pgv_A TMD-1, tropomodulin TMD 93.4 0.25 8.4E-06 45.6 8.3 20 643-662 150-169 (197)
408 3crm_A TRNA delta(2)-isopenten 93.3 0.046 1.6E-06 54.9 3.6 24 148-171 6-29 (323)
409 2q6t_A DNAB replication FORK h 93.3 0.25 8.6E-06 52.5 9.5 52 147-202 200-251 (444)
410 2cbz_A Multidrug resistance-as 93.2 0.039 1.3E-06 53.1 2.7 26 146-171 30-55 (237)
411 3exa_A TRNA delta(2)-isopenten 93.1 0.053 1.8E-06 53.9 3.6 24 148-171 4-27 (322)
412 3b9q_A Chloroplast SRP recepto 93.1 0.051 1.8E-06 54.4 3.6 26 146-171 99-124 (302)
413 3p32_A Probable GTPase RV1496/ 93.1 0.094 3.2E-06 54.0 5.8 37 135-171 65-103 (355)
414 3gfo_A Cobalt import ATP-bindi 93.1 0.041 1.4E-06 54.3 2.8 25 147-171 34-58 (275)
415 1q57_A DNA primase/helicase; d 93.1 0.31 1.1E-05 52.8 10.1 53 147-203 242-294 (503)
416 1b0u_A Histidine permease; ABC 93.1 0.042 1.4E-06 53.9 2.8 26 146-171 31-56 (262)
417 3vr4_D V-type sodium ATPase su 93.0 0.064 2.2E-06 56.0 4.2 101 138-239 141-258 (465)
418 2d2e_A SUFC protein; ABC-ATPas 93.0 0.05 1.7E-06 52.9 3.3 24 147-170 29-52 (250)
419 1oix_A RAS-related protein RAB 93.0 0.053 1.8E-06 50.2 3.4 25 147-171 29-53 (191)
420 3a8t_A Adenylate isopentenyltr 92.9 0.054 1.9E-06 54.5 3.4 25 147-171 40-64 (339)
421 1sgw_A Putative ABC transporte 92.9 0.038 1.3E-06 52.2 2.2 25 147-171 35-59 (214)
422 4g1u_C Hemin import ATP-bindin 92.9 0.045 1.5E-06 53.7 2.8 25 147-171 37-61 (266)
423 2zu0_C Probable ATP-dependent 92.9 0.053 1.8E-06 53.3 3.3 25 146-170 45-69 (267)
424 2pze_A Cystic fibrosis transme 92.9 0.046 1.6E-06 52.4 2.8 25 147-171 34-58 (229)
425 2olj_A Amino acid ABC transpor 92.9 0.046 1.6E-06 53.5 2.8 26 146-171 49-74 (263)
426 4eaq_A DTMP kinase, thymidylat 92.9 0.098 3.3E-06 50.0 5.1 25 147-171 26-50 (229)
427 1ji0_A ABC transporter; ATP bi 92.9 0.046 1.6E-06 52.8 2.7 25 147-171 32-56 (240)
428 3upu_A ATP-dependent DNA helic 92.9 0.097 3.3E-06 56.0 5.6 41 130-171 29-69 (459)
429 1g6h_A High-affinity branched- 92.8 0.046 1.6E-06 53.4 2.7 25 147-171 33-57 (257)
430 1mv5_A LMRA, multidrug resista 92.8 0.05 1.7E-06 52.7 2.9 26 146-171 27-52 (243)
431 2yhs_A FTSY, cell division pro 92.8 0.097 3.3E-06 55.6 5.3 26 146-171 292-317 (503)
432 2ff7_A Alpha-hemolysin translo 92.8 0.048 1.6E-06 52.9 2.7 25 147-171 35-59 (247)
433 3l0o_A Transcription terminati 92.8 0.23 7.7E-06 50.7 7.6 53 136-189 163-216 (427)
434 2eyu_A Twitching motility prot 92.7 0.061 2.1E-06 52.6 3.5 113 145-269 23-135 (261)
435 3foz_A TRNA delta(2)-isopenten 92.7 0.065 2.2E-06 53.1 3.6 25 147-171 10-34 (316)
436 3f9v_A Minichromosome maintena 92.7 0.035 1.2E-06 61.4 1.8 46 126-171 295-351 (595)
437 2v9p_A Replication protein E1; 92.7 0.057 1.9E-06 53.9 3.2 26 146-171 125-150 (305)
438 3end_A Light-independent proto 92.7 0.094 3.2E-06 52.7 4.9 41 145-188 39-79 (307)
439 1vpl_A ABC transporter, ATP-bi 92.7 0.05 1.7E-06 53.0 2.8 26 146-171 40-65 (256)
440 2dyk_A GTP-binding protein; GT 92.7 0.068 2.3E-06 47.5 3.5 24 148-171 2-25 (161)
441 1ltq_A Polynucleotide kinase; 92.6 0.064 2.2E-06 53.8 3.5 23 148-170 3-25 (301)
442 2ghi_A Transport protein; mult 92.6 0.052 1.8E-06 53.1 2.7 26 146-171 45-70 (260)
443 2qi9_C Vitamin B12 import ATP- 92.5 0.055 1.9E-06 52.5 2.8 25 147-171 26-50 (249)
444 2ixe_A Antigen peptide transpo 92.5 0.053 1.8E-06 53.4 2.7 26 146-171 44-69 (271)
445 2qmh_A HPR kinase/phosphorylas 92.5 0.069 2.4E-06 49.1 3.2 24 148-171 35-58 (205)
446 2f9l_A RAB11B, member RAS onco 92.5 0.068 2.3E-06 49.8 3.3 25 147-171 5-29 (199)
447 2wji_A Ferrous iron transport 92.5 0.065 2.2E-06 48.1 3.1 23 148-170 4-26 (165)
448 3zvl_A Bifunctional polynucleo 92.5 0.065 2.2E-06 56.5 3.5 27 145-171 256-282 (416)
449 1g8f_A Sulfate adenylyltransfe 92.4 0.12 4E-06 55.6 5.4 45 127-171 373-419 (511)
450 2og2_A Putative signal recogni 92.4 0.075 2.6E-06 54.4 3.7 26 146-171 156-181 (359)
451 2nq2_C Hypothetical ABC transp 92.4 0.058 2E-06 52.5 2.8 25 147-171 31-55 (253)
452 2ihy_A ABC transporter, ATP-bi 92.4 0.057 2E-06 53.3 2.8 25 147-171 47-71 (279)
453 2yz2_A Putative ABC transporte 92.4 0.057 2E-06 53.0 2.7 26 146-171 32-57 (266)
454 1q3t_A Cytidylate kinase; nucl 92.3 0.082 2.8E-06 50.9 3.7 26 146-171 15-40 (236)
455 3sop_A Neuronal-specific septi 92.3 0.072 2.5E-06 52.4 3.3 23 149-171 4-26 (270)
456 3cmu_A Protein RECA, recombina 92.3 0.27 9.3E-06 61.0 8.9 87 146-240 382-472 (2050)
457 2zej_A Dardarin, leucine-rich 92.3 0.056 1.9E-06 49.7 2.4 22 149-170 4-25 (184)
458 2ged_A SR-beta, signal recogni 92.3 0.14 4.8E-06 47.2 5.2 26 146-171 47-72 (193)
459 3bgw_A DNAB-like replicative h 92.2 0.35 1.2E-05 51.2 8.8 51 147-202 197-247 (444)
460 2qe7_A ATP synthase subunit al 92.1 0.2 6.8E-06 53.0 6.5 97 138-239 152-264 (502)
461 1nlf_A Regulatory protein REPA 92.1 0.073 2.5E-06 52.7 3.2 25 147-171 30-54 (279)
462 3cmw_A Protein RECA, recombina 92.1 0.21 7.2E-06 61.1 7.6 86 147-240 1431-1520(1706)
463 4gzl_A RAS-related C3 botulinu 92.1 0.085 2.9E-06 49.4 3.4 42 130-171 13-54 (204)
464 2ce2_X GTPase HRAS; signaling 92.0 0.077 2.6E-06 47.3 3.0 23 149-171 5-27 (166)
465 1svm_A Large T antigen; AAA+ f 92.0 0.078 2.7E-06 54.7 3.4 27 145-171 167-193 (377)
466 1p9r_A General secretion pathw 92.0 0.22 7.4E-06 52.2 6.8 27 145-171 165-191 (418)
467 1yrb_A ATP(GTP)binding protein 92.0 0.092 3.2E-06 51.3 3.8 26 146-171 13-38 (262)
468 2r6a_A DNAB helicase, replicat 91.9 0.25 8.5E-06 52.7 7.3 50 147-200 203-252 (454)
469 1zu4_A FTSY; GTPase, signal re 91.9 0.096 3.3E-06 52.9 3.8 26 146-171 104-129 (320)
470 1u0j_A DNA replication protein 91.9 0.16 5.5E-06 49.3 5.2 38 134-171 89-128 (267)
471 2ocp_A DGK, deoxyguanosine kin 91.9 0.099 3.4E-06 50.5 3.7 25 147-171 2-26 (241)
472 1z2a_A RAS-related protein RAB 91.9 0.083 2.8E-06 47.3 3.0 25 147-171 5-29 (168)
473 2pjz_A Hypothetical protein ST 91.8 0.074 2.5E-06 52.0 2.8 24 147-170 30-53 (263)
474 1cr0_A DNA primase/helicase; R 91.8 0.082 2.8E-06 52.9 3.2 26 146-171 34-59 (296)
475 3cmw_A Protein RECA, recombina 91.8 0.25 8.6E-06 60.5 7.9 87 146-240 382-472 (1706)
476 1pgv_A TMD-1, tropomodulin TMD 91.8 0.15 5E-06 47.2 4.6 81 516-596 41-135 (197)
477 3fvq_A Fe(3+) IONS import ATP- 91.8 0.084 2.9E-06 53.9 3.2 25 147-171 30-54 (359)
478 2wjg_A FEOB, ferrous iron tran 91.8 0.1 3.5E-06 47.9 3.6 23 148-170 8-30 (188)
479 3oaa_A ATP synthase subunit al 91.7 0.75 2.6E-05 48.5 10.3 98 138-239 152-264 (513)
480 3gmt_A Adenylate kinase; ssgci 91.7 0.1 3.5E-06 49.6 3.5 25 147-171 8-32 (230)
481 3nh6_A ATP-binding cassette SU 91.7 0.063 2.1E-06 53.7 2.1 26 146-171 79-104 (306)
482 4edh_A DTMP kinase, thymidylat 91.7 0.22 7.6E-06 46.9 5.9 24 148-171 7-30 (213)
483 3eph_A TRNA isopentenyltransfe 91.7 0.099 3.4E-06 53.9 3.6 24 148-171 3-26 (409)
484 3gqb_B V-type ATP synthase bet 91.7 0.1 3.6E-06 54.4 3.8 101 138-239 137-261 (464)
485 3iqw_A Tail-anchored protein t 91.6 0.21 7.2E-06 50.7 6.0 48 143-193 12-59 (334)
486 3mfy_A V-type ATP synthase alp 91.6 0.52 1.8E-05 50.3 9.0 58 137-199 216-275 (588)
487 3io3_A DEHA2D07832P; chaperone 91.6 0.18 6.3E-06 51.4 5.6 49 142-191 13-61 (348)
488 3lv8_A DTMP kinase, thymidylat 91.6 0.19 6.4E-06 48.1 5.3 25 147-171 27-51 (236)
489 3tui_C Methionine import ATP-b 91.6 0.094 3.2E-06 53.6 3.3 26 146-171 53-78 (366)
490 2nzj_A GTP-binding protein REM 91.5 0.087 3E-06 47.6 2.8 25 147-171 4-28 (175)
491 1zj6_A ADP-ribosylation factor 91.5 0.17 5.7E-06 46.4 4.8 35 135-170 5-39 (187)
492 3con_A GTPase NRAS; structural 91.5 0.095 3.3E-06 48.2 3.0 24 148-171 22-45 (190)
493 1u8z_A RAS-related protein RAL 91.4 0.099 3.4E-06 46.7 3.0 24 148-171 5-28 (168)
494 1tq4_A IIGP1, interferon-induc 91.4 0.12 4E-06 54.0 3.9 25 146-170 68-92 (413)
495 2vp4_A Deoxynucleoside kinase; 91.4 0.069 2.4E-06 51.2 2.0 25 146-170 19-43 (230)
496 2bbs_A Cystic fibrosis transme 91.4 0.084 2.9E-06 52.4 2.7 26 146-171 63-88 (290)
497 4tmk_A Protein (thymidylate ki 91.4 0.22 7.7E-06 46.8 5.5 24 148-171 4-27 (213)
498 2lkc_A Translation initiation 91.4 0.13 4.3E-06 46.6 3.7 26 146-171 7-32 (178)
499 2gj8_A MNME, tRNA modification 91.3 0.1 3.4E-06 47.3 2.9 24 148-171 5-28 (172)
500 1z47_A CYSA, putative ABC-tran 91.3 0.1 3.5E-06 53.3 3.2 25 147-171 41-65 (355)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4e-48 Score=431.67 Aligned_cols=313 Identities=15% Similarity=0.124 Sum_probs=251.3
Q ss_pred cCchHHHHHHHHHhcCC---CceEEEEEcCCCChHHHHHHHHHh--hhcCCCCCcCEEEEEEecCcC--CHHHHHHHHHH
Q 038398 129 VGLESTFDKVWRCLGEE---QVGIIGLYGMGGVGKTTLLTKINN--KLLGAPNVFDVVIWVVVSKDL--QLEKIQEKIGR 201 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~ 201 (720)
|||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .++.+|+.++||++++.+ +...++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 69999999999999643 579999999999999999999998 44 568899999999999985 78999999999
Q ss_pred HhCCCCC-----ccCCCChhHHHHHHHHHhccC-cEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhhhc-
Q 038398 202 RIGFFDE-----SWKNGSLEDKTSDILRILGKK-KFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGALK- 274 (720)
Q Consensus 202 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~~- 274 (720)
+++.... .....+.+.....+++.|.++ |+||||||||+..++ .+ + ..+||+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCC
Confidence 9986532 112234456788999999996 999999999997654 11 1 127999999999999988775
Q ss_pred cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhcccC
Q 038398 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRRSAS 354 (720)
Q Consensus 275 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 354 (720)
...+|++++|+++|||+||.++++... .++.+.+++.+|+++|+|+||||+++|+.++.+ .|+.+ +.+....+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHHhh
Confidence 346799999999999999999987643 246788899999999999999999999998764 25443 44443322
Q ss_pred CCCCCCccchhhHHhhcCCCCCcchhHHHH-----------hhcCCCCCcccChHHHHHHHHhh--CCCCccc-chhhHH
Q 038398 355 EFPGMGKEVYPLLKFSYDSLPDDTIRSYLL-----------YCGLFPEDYRIRKSELIDCWIGE--GFLDQYD-RSGAYN 420 (720)
Q Consensus 355 ~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl-----------~~~~fp~~~~i~~~~li~~Wiae--g~~~~~~-~~~~~~ 420 (720)
... ...+..++.+||+.||. ++|.||+ |||+||+++.|+ +.+|+|+ ||+...+ ....++
T Consensus 357 ~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 357 SRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred ccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 211 24788999999999999 8999999 999999999999 8999999 9998766 555666
Q ss_pred hHHHHHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHHhhh
Q 038398 421 EGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIACKI 469 (720)
Q Consensus 421 ~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 469 (720)
.++ ++++|+++||++.... +...+|+|||+||++|++++.+.
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~------~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKR------MPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEEC------SSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHH-HHHHHHHcCCeeEecC------CCceEEEeChHHHHHHHHHHHHH
Confidence 676 9999999999998752 13578999999999999888653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.1e-40 Score=369.06 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=228.9
Q ss_pred CcCchHHHHHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCE-EEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 128 TVGLESTFDKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDV-VIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
.|||++++++|.++|.. +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 49999999999999965 567999999999999999999999875 45678985 9999999999988888887775432
Q ss_pred CCCcc---C------CCChhHHHHHHHHHh---ccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhhh
Q 038398 206 FDESW---K------NGSLEDKTSDILRIL---GKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGAL 273 (720)
Q Consensus 206 ~~~~~---~------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~~ 273 (720)
..... . ..+.+.....+++.+ .++|+||||||||+...|+.+ ..||+||||||+..++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhc
Confidence 11000 0 012334556677766 679999999999998888764 2689999999999988655
Q ss_pred ccCceeecc------CCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcC-CChhHHHHHH
Q 038398 274 KAHEFLKVE------CLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACK-KTPQEWHYAI 346 (720)
Q Consensus 274 ~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~-~~~~~w~~~l 346 (720)
.....|.++ +|+.+|||+||++.+... ..++..+| |+|+||||+++|+.|+.+ .+..+|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-
Confidence 544567777 999999999999985321 12334444 999999999999999986 367788652
Q ss_pred HHHhcccCCCCCCCccchhhHHhhcCCCCCcch-hHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHH
Q 038398 347 QVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTI-RSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYI 425 (720)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~ 425 (720)
....+..+|.+||+.||+ +. |.||++||+||+++.|+.+.++.+|+++| ++.+..+
T Consensus 351 ------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~ 407 (1221)
T 1vt4_I 351 ------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVV 407 (1221)
T ss_dssp ------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHH
T ss_pred ------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHH
Confidence 125899999999999999 78 99999999999999999999999999887 1357889
Q ss_pred HHHHHHhccccccCCCCCcccCCceEEEehHHHHHHH
Q 038398 426 IGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMV 462 (720)
Q Consensus 426 ~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a 462 (720)
+++|+++||++.... ...|+|||++++++
T Consensus 408 L~eLvdRSLLq~d~~--------~~rYrMHDLllELr 436 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQPK--------ESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHTSSSSSBCSS--------SSEEBCCCHHHHHH
T ss_pred HHHHHhhCCEEEeCC--------CCEEEehHHHHHHh
Confidence 999999999988532 56899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-38 Score=393.39 Aligned_cols=315 Identities=20% Similarity=0.274 Sum_probs=255.0
Q ss_pred CCCCCCcCchHHHHHHHHHhc--CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCC-CcCEEEEEEecCcCC--HHHHHH
Q 038398 123 RPCEPTVGLESTFDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPN-VFDVVIWVVVSKDLQ--LEKIQE 197 (720)
Q Consensus 123 ~~~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~v~~~~~--~~~~~~ 197 (720)
.+...||||++++++|.++|. +++.++|+|+||||+||||||++++++...... .|+.++||++++... ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 344679999999999999995 356899999999999999999999988522234 456899999988543 445567
Q ss_pred HHHHHhCCCCC--ccCCCChhHHHHHHHHHhccC--cEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhh-
Q 038398 198 KIGRRIGFFDE--SWKNGSLEDKTSDILRILGKK--KFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGA- 272 (720)
Q Consensus 198 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~- 272 (720)
.++..+..... .....+.++....++..+.++ |+||||||||+..+|..+ .+||+||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 77777765432 113456677888888888877 999999999998777654 568999999999999854
Q ss_pred hccCceeeccC-CChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhc
Q 038398 273 LKAHEFLKVEC-LGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVLRR 351 (720)
Q Consensus 273 ~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~ 351 (720)
+.....+++++ |+++||++||...++.. .+...+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+..
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN 347 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh
Confidence 45567889996 99999999999988543 344567899999999999999999999998743 579999999877
Q ss_pred ccCCCC-----CCCccchhhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHHHH
Q 038398 352 SASEFP-----GMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYYII 426 (720)
Q Consensus 352 ~~~~~~-----~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~~~ 426 (720)
..+..- ...+.+..++.+||+.||+ +.|.||++||+||+++.|++..++.+|.++ .+.++.++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l 415 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDIL 415 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHH
Confidence 643321 1113689999999999999 899999999999999999999999999654 36788999
Q ss_pred HHHHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHHhh
Q 038398 427 GILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIACK 468 (720)
Q Consensus 427 ~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 468 (720)
++|+++||++... .+....|+|||+||++|+..+.+
T Consensus 416 ~~L~~~sl~~~~~------~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 416 QEFVNKSLLFCNR------NGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHTTSCEEEE------SSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHhccceEEec------CCCceEEEecHHHHHHHHhhhhH
Confidence 9999999998764 23356799999999999998755
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=336.53 Aligned_cols=309 Identities=20% Similarity=0.293 Sum_probs=239.8
Q ss_pred CCCCCcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhhcCC-CCCc-CEEEEEEecCcCCHHHHHH--
Q 038398 124 PCEPTVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKLLGA-PNVF-DVVIWVVVSKDLQLEKIQE-- 197 (720)
Q Consensus 124 ~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~v~~~~~~~~~~~-- 197 (720)
+.+.||||+.++++|.++|.. ++.++|+|+||||+||||||+.++++. .+ ..+| +.++|++++.. +...+..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 346799999999999999974 467899999999999999999999875 33 4678 58999999876 3333333
Q ss_pred -HHHHHhCCCC--CccCCCChhHHHHHHHHHhcc--CcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhhh
Q 038398 198 -KIGRRIGFFD--ESWKNGSLEDKTSDILRILGK--KKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICGA 272 (720)
Q Consensus 198 -~i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~~ 272 (720)
.++..++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..|++||||||+..++..
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 3344554211 111345566777888888877 7899999999987665533 468999999999988765
Q ss_pred hccCceeec---cCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHH
Q 038398 273 LKAHEFLKV---ECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAMACKKTPQEWHYAIQVL 349 (720)
Q Consensus 273 ~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l 349 (720)
+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||+.+|+.++.. ..+|...++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 43 334554 58999999999999987532 1224578999999999999999999999874 34799988888
Q ss_pred hcccCCC-----CCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCCCCcccchhhHHhHHH
Q 038398 350 RRSASEF-----PGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGFLDQYDRSGAYNEGYY 424 (720)
Q Consensus 350 ~~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~~~~~~~~~~~~~~~~ 424 (720)
....... ......+..++..||+.||+ +.|.||++||+||+++.|+...+...|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 7654221 11224788999999999999 899999999999999999999999999543 245778
Q ss_pred HHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHHHHHH
Q 038398 425 IIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVLWIA 466 (720)
Q Consensus 425 ~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 466 (720)
++++|+++||++... ++....|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~------~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDR------NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEE------ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEec------CCCccEEEEcHHHHHHHHhhh
Confidence 899999999998653 223568999999999999874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=4.7e-19 Score=184.23 Aligned_cols=217 Identities=22% Similarity=0.232 Sum_probs=177.3
Q ss_pred EEEEcCCCCccCc-ccccccceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCC
Q 038398 476 FLVHAGLGLTEAP-EIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLL 553 (720)
Q Consensus 476 ~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (720)
.+...+.....+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+|.. +.++++|++|+|++|+..
T Consensus 85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTC
T ss_pred EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCc
Confidence 3444444544544 47778999999999999988876 47899999999999999877765 899999999999998889
Q ss_pred ccCCccccC---------CCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCC
Q 038398 554 WKLPSGIST---------LVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGG 624 (720)
Q Consensus 554 ~~lp~~i~~---------l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~ 624 (720)
+.+|..++. +++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. ++.+++|+.|++.+|..
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEECTTCTT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEECcCCcc
Confidence 999988765 9999999999999999999999999999999999 467788875 88999999999887543
Q ss_pred CcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcc
Q 038398 625 SKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLN 704 (720)
Q Consensus 625 ~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~ 704 (720)
.. ..+..+..+++|+.|.++.|... ..++.....+++|+.|+|++|+.+..+| ..+.++++|+
T Consensus 242 ~~--------------~~p~~~~~l~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~ 304 (328)
T 4fcg_A 242 LR--------------NYPPIFGGRAPLKRLILKDCSNL--LTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANC 304 (328)
T ss_dssp CC--------------BCCCCTTCCCCCCEEECTTCTTC--CBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTC
T ss_pred hh--------------hhHHHhcCCCCCCEEECCCCCch--hhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCce
Confidence 32 12334677899999999876553 2334455667899999999999888888 7899999999
Q ss_pred eeeecCCC
Q 038398 705 KLYVAGCK 712 (720)
Q Consensus 705 ~L~l~~c~ 712 (720)
.+++..+.
T Consensus 305 ~l~l~~~~ 312 (328)
T 4fcg_A 305 IILVPPHL 312 (328)
T ss_dssp EEECCGGG
T ss_pred EEeCCHHH
Confidence 99987543
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=6.2e-19 Score=183.34 Aligned_cols=203 Identities=21% Similarity=0.308 Sum_probs=169.6
Q ss_pred cceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEecc
Q 038398 494 RNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (720)
.+++.|++++|.+..+|. +..+++|++|++++|.++.+|.. +.++++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 578999999999998876 46799999999999999877755 799999999999999655 889999999999999999
Q ss_pred CC-CCcccchhhhc---------CCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCcccc
Q 038398 573 ST-AITHLPIELQK---------LVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFL 642 (720)
Q Consensus 573 ~~-~i~~lp~~i~~---------l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~ 642 (720)
+| .+..+|..+.. +++|++|++++ +.+..+|.. ++.+++|++|++.++. +..+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~-l~~l~~L~~L~L~~N~---l~~l------------ 221 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPAS-IANLQNLKSLKIRNSP---LSAL------------ 221 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGG-GGGCTTCCEEEEESSC---CCCC------------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHh-hcCCCCCCEEEccCCC---CCcC------------
Confidence 97 56688887664 99999999999 467789976 8899999999988653 3222
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCcccc
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
+..+..+++|+.|++++|.... .++.....+++|+.|++++|+....+| ..+.++++|+.|+|++|+.+..+|
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALR--NYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCC
T ss_pred chhhccCCCCCEEECcCCcchh--hhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhcc
Confidence 2247788999999999876543 234455566799999999988888887 668999999999999999988776
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=176.71 Aligned_cols=233 Identities=20% Similarity=0.194 Sum_probs=154.4
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.....+|. .-.+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+.
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 113 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS- 113 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred eeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-
Confidence 3344444555553 223578888888888877655 577888888888888888777766888888888888888554
Q ss_pred cCCcc-ccCCCCCCEEeccCCCCcccch--hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchh
Q 038398 555 KLPSG-ISTLVSLEHLDLSSTAITHLPI--ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLK 631 (720)
Q Consensus 555 ~lp~~-i~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~ 631 (720)
.+|.. ++++++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...++.+++|+.|++.++... .+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~ 190 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---SYE 190 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---EEC
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---ccC
Confidence 44443 7788888888888888888876 57788888888888865666666545667777777776654322 211
Q ss_pred cccccC-------------CccccHHHhcCCCCCceeEEEecchhh-----------------------------HHHHh
Q 038398 632 INVLFG-------------GHQFLVEELMGMKHLMVLTITLKSWQA-----------------------------LKELL 669 (720)
Q Consensus 632 ~~~~~~-------------~~~~~~~~l~~l~~L~~L~~~~~~~~~-----------------------------l~~l~ 669 (720)
...+.. ........+..+++|+.|+++.|.+.. +..++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 111100 001111123345667777776665433 12334
Q ss_pred hhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCc
Q 038398 670 ISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLE 715 (720)
Q Consensus 670 ~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~ 715 (720)
.....+++|+.|++++ +.++.++...|.++++|+.|+|++|+-.-
T Consensus 271 ~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 271 KLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 4445567899999998 56778885557889999999999997543
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.6e-17 Score=181.24 Aligned_cols=232 Identities=21% Similarity=0.203 Sum_probs=165.4
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.+...+|. .-.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+..
T Consensus 59 v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 59 VVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred EEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 3444445555553 22368999999999988763 35788999999999999988888889999999999999996665
Q ss_pred cCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchh--
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLK-- 631 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~-- 631 (720)
..+..+..+++|++|+|++|.++.+|. .+.++++|+.|++++|+.+..+|...+..+++|+.|++.++....+..+.
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 217 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTC
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccccc
Confidence 555568889999999999999998876 58889999999999988888888776788888888887765433221100
Q ss_pred ----cccc--cCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcce
Q 038398 632 ----INVL--FGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNK 705 (720)
Q Consensus 632 ----~~~~--~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~ 705 (720)
.-.. ..........+..+++|+.|.++.|.+..+. ...+..+++|+.|+|++ |.++.++...+..+++|+.
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCE
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCE
Confidence 0000 0112223445667777777777766654432 12334456788888877 4567777666777888888
Q ss_pred eeecCCC
Q 038398 706 LYVAGCK 712 (720)
Q Consensus 706 L~l~~c~ 712 (720)
|+|++|+
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 8888776
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.5e-17 Score=169.67 Aligned_cols=219 Identities=22% Similarity=0.272 Sum_probs=173.8
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.+...+|. ...+++++|++++|.+..++. +..+++|++|++++|.++.+.+..|.++++|++|++++|..+.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 3344444555553 335789999999999988764 5789999999999999999877779999999999999997344
Q ss_pred cC-CccccCCCCCCEEeccCCCCccc-chhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhc
Q 038398 555 KL-PSGISTLVSLEHLDLSSTAITHL-PIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKI 632 (720)
Q Consensus 555 ~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~ 632 (720)
.+ |..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.+..+|...++.+++|+.|++.+ |.+..++.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~---n~l~~~~~ 170 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHG---NRISSVPE 170 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS---SCCCEECT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCC---CcccccCH
Confidence 54 78899999999999999999988 55689999999999999 467788876678888988888776 44433322
Q ss_pred ccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 633 NVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 633 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
..+..+++|+.|.++.|.+..+. +.....+++|+.|++++ +.+..++...+..+++|+.|+|++|+
T Consensus 171 -----------~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 171 -----------RAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -----------HHhcCccccCEEECCCCcccccC--HhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 23567889999999988876542 23344567999999998 56777876779999999999999997
Q ss_pred CC
Q 038398 713 HL 714 (720)
Q Consensus 713 ~l 714 (720)
-.
T Consensus 237 ~~ 238 (285)
T 1ozn_A 237 WV 238 (285)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=179.74 Aligned_cols=229 Identities=19% Similarity=0.210 Sum_probs=162.9
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.....+|.. -.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+..
T Consensus 48 v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 48 VICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence 44445555555542 2368899999999988765 35788999999999999988888889999999999999996654
Q ss_pred cCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcc
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKIN 633 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~ 633 (720)
..+..+..+++|++|+|++|.++.+|. .+.++++|++|++++|+.+..++...+..+++|+.|++.++.. ..++.-
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---~~~~~~ 203 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---REIPNL 203 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC---SSCCCC
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC---cccccc
Confidence 445578899999999999999998875 5888999999999998888888876678888888888776533 322210
Q ss_pred ---------cc--cCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCC
Q 038398 634 ---------VL--FGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRN 702 (720)
Q Consensus 634 ---------~~--~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~ 702 (720)
.. ..........+..+++|+.|.++.|.+..+.. ..+..+++|+.|+|++ |.++.++...+..+++
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER--NAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHH 280 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTT
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh--hhhcCCCCCCEEECCC-CCCCccChhHhccccC
Confidence 00 01111223445566677777776666544321 2233446777777777 4566777666777778
Q ss_pred cceeeecCCC
Q 038398 703 LNKLYVAGCK 712 (720)
Q Consensus 703 L~~L~l~~c~ 712 (720)
|+.|+|++|+
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 8888887776
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=3.1e-17 Score=168.96 Aligned_cols=194 Identities=20% Similarity=0.274 Sum_probs=159.1
Q ss_pred cccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
.....++++++|++.+|.+..++.+..+++|++|++++|.+..+++ +..+++|++|+|++|.+ ..+| .+..+++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-KNVS-AIAGLQSIK 110 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCC
T ss_pred ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-CCch-hhcCCCCCC
Confidence 3456678999999999999888888889999999999999988877 88999999999999964 4555 688999999
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhc
Q 038398 568 HLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM 647 (720)
Q Consensus 568 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 647 (720)
+|++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|+.|++.++ .+..++ .+.
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n---~l~~~~-------------~l~ 170 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA---QVSDLT-------------PLA 170 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS---CCCCCG-------------GGT
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC---cCCCCh-------------hhc
Confidence 99999999999875 899999999999984 6777876 788888888888764 332211 167
Q ss_pred CCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 648 GMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 648 ~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
.+++|+.|.++.|.+..+.. ...+++|+.|++++ +.+..++ .+..+++|+.|++++|+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~-N~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP----LASLPNLIEVHLKN-NQISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTT-SCCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh----hcCCCCCCEEEccC-CccCccc--cccCCCCCCEEEccCCe
Confidence 78999999999888876543 34556899999998 4566666 58889999999999887
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=6.4e-17 Score=164.04 Aligned_cols=218 Identities=21% Similarity=0.214 Sum_probs=167.0
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.....+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|.+.+
T Consensus 12 ~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 33444445555542 2357999999999998876 35789999999999999999988779999999999999997776
Q ss_pred cCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCC--CchhhhhccccCceeeccccCCCcccchh
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQ--FPRLVISAFSKLQVLRMFDCGGSKIERLK 631 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~~~~~~~~~l~~l~ 631 (720)
..|..+.++++|++|++++|.++.++. .+.++++|++|++++| .+.. +|.. ++.+++|++|++.++ .+..++
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N---~l~~~~ 165 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSN---KIQSIY 165 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSS---CCCEEC
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCC---CCCcCC
Confidence 677889999999999999999998876 5899999999999994 5555 5654 788899998887764 444332
Q ss_pred cccccCCccccHHHhcCCCCCc-eeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecC
Q 038398 632 INVLFGGHQFLVEELMGMKHLM-VLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAG 710 (720)
Q Consensus 632 ~~~~~~~~~~~~~~l~~l~~L~-~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~ 710 (720)
. ..+..+..++.|. .|.++.|.+..+.. .... ..+|+.|++++ +.++.++...+.++++|+.|+|++
T Consensus 166 ~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~--~~~~-~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 166 C--------TDLRVLHQMPLLNLSLDLSLNPMNFIQP--GAFK-EIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp G--------GGGHHHHTCTTCCEEEECCSSCCCEECT--TSSC-SCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred H--------HHhhhhhhccccceeeecCCCcccccCc--cccC-CCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 2 1233455555555 78888777765432 1112 23899999998 558888867789999999999997
Q ss_pred CC
Q 038398 711 CK 712 (720)
Q Consensus 711 c~ 712 (720)
|+
T Consensus 234 N~ 235 (276)
T 2z62_A 234 NP 235 (276)
T ss_dssp SC
T ss_pred Cc
Confidence 65
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.71 E-value=5.1e-16 Score=163.25 Aligned_cols=292 Identities=16% Similarity=0.110 Sum_probs=177.6
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC------CHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL------QLEKIQEKI 199 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~i 199 (720)
+.||||+++++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 57899999999999998654 799999999999999999999875 1 6788765442 556666666
Q ss_pred HHHhCCC--------------CC--ccCCCChhHHHHHHHHHhcc-CcEEEEEeccccccc---------cccccccCCC
Q 038398 200 GRRIGFF--------------DE--SWKNGSLEDKTSDILRILGK-KKFLLLLDDIWERVD---------LTKVGIPFPD 253 (720)
Q Consensus 200 ~~~l~~~--------------~~--~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~~~~ 253 (720)
...+... .. .....+..+....+.+.... ++++|||||++.... +..+.... .
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~ 160 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-D 160 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-H
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-H
Confidence 6655320 00 00113445555556555543 499999999976432 11111111 1
Q ss_pred CCCCcEEEEEcCChhHhhhh------------ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC
Q 038398 254 PENKSKIVFTTHFLEICGAL------------KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG 321 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~~~------------~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 321 (720)
...+.++|+|++.......+ .....+++.+|+.+|+.+++...+...... .-.+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCC
Confidence 12467899998876532211 112478999999999999998765322211 125678899999999
Q ss_pred cchHHHHHHHHHhcCCChhHHHH-HHHHHhcccCCCCCCCccchhhH-HhhcCCCCCcchhHHHHhhcCCCCCcccChHH
Q 038398 322 LPLALITIGRAMACKKTPQEWHY-AIQVLRRSASEFPGMGKEVYPLL-KFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSE 399 (720)
Q Consensus 322 lPLai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~ 399 (720)
+|+++..++..+....+...+.. ..+.... .+...+ .+.+ + ++ ..+..+..+|. + ..+...
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~l~~-~-~~-~~~~~l~~la~---g-~~~~~~ 300 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG----------LIMGELEELRR-R-SP-RYVDILRAIAL---G-YNRWSL 300 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHH-H-CH-HHHHHHHHHHT---T-CCSHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHH----------HHHHHHHHHHh-C-Ch-hHHHHHHHHHh---C-CCCHHH
Confidence 99999999876432222222211 1111100 011111 1111 1 55 68888888887 2 234444
Q ss_pred HHHHHHhhCCCCcccchhhHHhHHHHHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHHH
Q 038398 400 LIDCWIGEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMVL 463 (720)
Q Consensus 400 li~~Wiaeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a~ 463 (720)
+.....+. .- . ........+++.|.+.+++...+ ..+..-|++++++.+
T Consensus 301 l~~~~~~~-~~-~----~~~~~~~~~l~~L~~~gli~~~~---------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVK-GT-K----IPEPRLYALLENLKKMNWIVEED---------NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHT-TC-C----CCHHHHHHHHHHHHHTTSEEEET---------TEEEESSHHHHHHHT
T ss_pred HHHHHHHH-hC-C----CCHHHHHHHHHHHHhCCCEEecC---------CEEEEecHHHHHHHc
Confidence 44432111 10 0 11245678899999999998753 333445888887653
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=5.1e-17 Score=165.60 Aligned_cols=202 Identities=21% Similarity=0.210 Sum_probs=157.2
Q ss_pred cccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEE
Q 038398 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (720)
+..+++++.+++.++.+..+|... .++++.|++++|.++.+++..|.++++|++|+|++|.+. .+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEE
Confidence 456678899999999988887532 368999999999998888878899999999999999554 45543 788999999
Q ss_pred eccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCC
Q 038398 570 DLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGM 649 (720)
Q Consensus 570 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l 649 (720)
++++|.++.+|..+..+++|++|++++ +.+..+|...+..+++|+.|++.+ |.+..++. ..+..+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~---N~l~~~~~-----------~~~~~l 147 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG---NELKTLPP-----------GLLTPT 147 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTT---SCCCCCCT-----------TTTTTC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCC---CCCCccCh-----------hhcccc
Confidence 999999999998888999999999998 577888866678888888887765 44443332 224567
Q ss_pred CCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 650 KHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 650 ~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
++|+.|.++.|.+..++. ..+..+++|+.|++++ +.++.+| ..+..+++|+.|+|++|+-
T Consensus 148 ~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~~-N~l~~ip-~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQE-NSLYTIP-KGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCCCSEEECCSCCB
T ss_pred cCCCEEECCCCcCCccCH--HHhcCcCCCCEEECCC-CcCCccC-hhhcccccCCeEEeCCCCc
Confidence 889999998887765432 2234557899999997 6677887 4566677899999998873
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.3e-16 Score=161.17 Aligned_cols=198 Identities=21% Similarity=0.231 Sum_probs=93.3
Q ss_pred eeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
.+.++++++.+..+|... .++|+.|++++|.++.+++..|.++++|++|+|++|.+....+..+..+++|++|++++|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 344555555555444321 1345555555555555554445555555555555553332222223455555555555555
Q ss_pred Ccccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCce
Q 038398 576 ITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMV 654 (720)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~ 654 (720)
++.+|.. +.++++|++|++++ +.+..+|...++.+++|++|++.++ .+..++. ..+..+++|+.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~-----------~~~~~l~~L~~ 161 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYN---ELQSLPK-----------GVFDKLTSLKE 161 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS---CCCCCCT-----------TTTTTCTTCCE
T ss_pred CCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCC---cCCccCH-----------hHccCCcccce
Confidence 5555432 34555555555555 3344444433444555555544432 2221111 11334455555
Q ss_pred eEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 655 LTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 655 L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
|.++.|.+..+.. ..+..+++|+.|++++ +.++.++...+..+++|+.|+|++|+
T Consensus 162 L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQLKRVPE--GAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCT--TTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEecCCcCcEeCh--hHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 5555544433211 1122334566666665 34555554455666666666666655
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=8.1e-17 Score=172.08 Aligned_cols=125 Identities=22% Similarity=0.357 Sum_probs=82.1
Q ss_pred cccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCcc-ccCCCCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSG-ISTLVSL 566 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L 566 (720)
+..+++|+.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+. .+|.. ++++++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCC
Confidence 4566777777777777766543 466777777777777777777666777777777777777443 55544 4677777
Q ss_pred CEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeec
Q 038398 567 EHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRM 619 (720)
Q Consensus 567 ~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~ 619 (720)
++|++++|.++.+|. .+.++++|++|++++| .+..++ ++.+++|+.|++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEEC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeec
Confidence 777777777776643 4777777777777773 444443 334444444433
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=2.5e-17 Score=170.15 Aligned_cols=133 Identities=15% Similarity=0.273 Sum_probs=89.6
Q ss_pred CcccccccceeEEEecc-ccccc-CC-CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCC
Q 038398 487 APEIQNWRNVRRMSLMK-NKIEN-LS-ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTL 563 (720)
Q Consensus 487 ~~~~~~~~~l~~L~l~~-~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l 563 (720)
++.+..+++|++|++++ |.+.. +| .+..+++|++|++++|.+....+..|.++++|++|+|++|.+.+.+|..++.+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 34566777788888874 66542 33 24667778888888777765545557777788888888776666777777777
Q ss_pred CCCCEEeccCCCCc-ccchhhhcCC-CCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 564 VSLEHLDLSSTAIT-HLPIELQKLV-NLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 564 ~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
++|++|++++|.++ .+|..+..++ +|++|++++|.....+|.. ++.++ |+.|++.+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 88888888877777 6777777776 7788887774322244543 55554 55555543
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=6.8e-17 Score=166.55 Aligned_cols=227 Identities=21% Similarity=0.201 Sum_probs=144.1
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcc--hHHhccCCcccEEEccCCCC
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMST--DDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~ 552 (720)
+...+.+...+|. .-.+++++|++++|.+..++. +..+++|++|++++|.+.... +..+..+++|++|+|++|.
T Consensus 12 l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG- 89 (306)
T ss_dssp EECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-
T ss_pred EEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-
Confidence 3444445555554 234689999999999988876 478899999999999887552 3346678999999999994
Q ss_pred CccCCccccCCCCCCEEeccCCCCcccch--hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccc-
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITHLPI--ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIER- 629 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~- 629 (720)
+..+|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..++...++.+++|+.|++.++ .+..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~ 165 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN---SFQEN 165 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTC---EEGGG
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCC---ccccc
Confidence 45788889999999999999999988874 6888999999999985 444444445777888888877654 3321
Q ss_pred -hhcc----------ccc--CCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCcccccc
Q 038398 630 -LKIN----------VLF--GGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFC 696 (720)
Q Consensus 630 -l~~~----------~~~--~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 696 (720)
++.. ... ......+..+..+++|+.|.+++|.+..+... ....+++|+.|+++++ .+...+...
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~ 242 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--PYKCLNSLQVLDYSLN-HIMTSKKQE 242 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--GGTTCTTCCEEECTTS-CCCBCSSSS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--hccCcccCCEeECCCC-CCcccCHHH
Confidence 1100 000 01111123344555555555555554432211 1223345566666553 333333344
Q ss_pred ccccC-CcceeeecCCC
Q 038398 697 LAGLR-NLNKLYVAGCK 712 (720)
Q Consensus 697 l~~l~-~L~~L~l~~c~ 712 (720)
+..++ +|+.|+|++|+
T Consensus 243 ~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCCCTTCCEEECTTCC
T ss_pred HHhhhccCCEEEccCCC
Confidence 55553 56666666554
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=8.5e-16 Score=161.36 Aligned_cols=219 Identities=15% Similarity=0.260 Sum_probs=104.3
Q ss_pred CCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCc--
Q 038398 481 GLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPS-- 558 (720)
Q Consensus 481 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-- 558 (720)
+.....++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.++. +.++++|++|++++|.+. .+|.
T Consensus 53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~-~~~~~~ 129 (347)
T 4fmz_A 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS-DISPLA 129 (347)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCC-CCGGGT
T ss_pred CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCccc-Cchhhc
Confidence 33334444455555555555555555555444555555555555555544431 455555555555555322 2222
Q ss_pred --------------------cccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceee
Q 038398 559 --------------------GISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLR 618 (720)
Q Consensus 559 --------------------~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~ 618 (720)
.+..+++|++|++++|.+..++. +..+++|+.|++++| .+..++. +..+++|+.|.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEE
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceee
Confidence 24444444555554444444443 444555555555542 3344443 34444444444
Q ss_pred ccccCCCcccchh------cccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCcc
Q 038398 619 MFDCGGSKIERLK------INVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSL 692 (720)
Q Consensus 619 ~~~~~~~~l~~l~------~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l 692 (720)
+.++....+..+. .-...+..-.....+..+++|+.|.++.|.+..++ ....+++|+.|++++| .+..+
T Consensus 206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n-~l~~~ 280 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSN-QISDI 280 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSS-CCCCC
T ss_pred cccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCCh----hHhcCCCcCEEEccCC-ccCCC
Confidence 4433221111000 00000000001111556666666666666555432 2334457777777764 45555
Q ss_pred ccccccccCCcceeeecCCCC
Q 038398 693 DIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 693 ~~~~l~~l~~L~~L~l~~c~~ 713 (720)
+ .+..+++|+.|++++|+.
T Consensus 281 ~--~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 281 S--VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp G--GGGGCTTCSEEECCSSCC
T ss_pred h--hhcCCCCCCEEECcCCcC
Confidence 4 567777777777777753
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=174.12 Aligned_cols=220 Identities=20% Similarity=0.243 Sum_probs=123.9
Q ss_pred ccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|+.|++++|.+..+. .+.++++|++|++++|.++.+++..|.++++|++|+|++|.+....|..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 3555666666666666665542 23566666777776666666666556666667777776665555556666666666
Q ss_pred CEEeccCCCCcccc-hhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccc----------------
Q 038398 567 EHLDLSSTAITHLP-IELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIER---------------- 629 (720)
Q Consensus 567 ~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~---------------- 629 (720)
++|++++|.++.++ ..+.++++|+.|++++| .+..+|...+..+++|+.|++.++....+..
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 66666666666553 34666666666666663 4555665555666666666655433221110
Q ss_pred ------hhcccc------------cCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCc
Q 038398 630 ------LKINVL------------FGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKS 691 (720)
Q Consensus 630 ------l~~~~~------------~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 691 (720)
++...+ ..........+..+++|+.|+++.|.+..+.. .....+++|+.|+|++ +.+..
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~-n~l~~ 286 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG--SMLHELLRLQEIQLVG-GQLAV 286 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT--TSCTTCTTCCEEECCS-SCCSE
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh--hhccccccCCEEECCC-Cccce
Confidence 000000 00111122345555666666666555443221 1223345667777766 44555
Q ss_pred cccccccccCCcceeeecCCC
Q 038398 692 LDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 692 l~~~~l~~l~~L~~L~l~~c~ 712 (720)
++...|.++++|+.|+|++|.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSC
T ss_pred ECHHHhcCcccCCEEECCCCc
Confidence 554567777778888887764
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=1.1e-15 Score=160.48 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=155.5
Q ss_pred cCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCcc
Q 038398 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSG 559 (720)
Q Consensus 480 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~ 559 (720)
.+.....++.+..+++|++|++++|.+..++.+..+++|++|++++|......+. +..+++|++|++++|... .++.
T Consensus 96 ~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~- 172 (347)
T 4fmz_A 96 GTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP- 172 (347)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-
T ss_pred cCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-
Confidence 3334444455556666666666666666555556666666666666633333333 677778888888887543 4443
Q ss_pred ccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhc------c
Q 038398 560 ISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKI------N 633 (720)
Q Consensus 560 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~------~ 633 (720)
+..+++|++|++++|.++.+|. +..+++|+.|++++| .+..++. +..+++|+.|++.++....+..+.. -
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L 248 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWL 248 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred hccCCCCCEEEccCCccccccc-ccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEE
Confidence 8899999999999999999986 889999999999994 6677766 7889999999988765443222110 0
Q ss_pred cccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 634 VLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 634 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
...+..-.....+..+++|+.|.+++|.+..++ ....+++|+.|++++| .+...+...+.++++|+.|++++|+.
T Consensus 249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 249 EIGTNQISDINAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred ECCCCccCCChhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCcc
Confidence 011111112345788999999999999887653 3445679999999985 46666667899999999999999984
Q ss_pred C
Q 038398 714 L 714 (720)
Q Consensus 714 l 714 (720)
-
T Consensus 324 ~ 324 (347)
T 4fmz_A 324 T 324 (347)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=174.14 Aligned_cols=222 Identities=19% Similarity=0.228 Sum_probs=156.5
Q ss_pred cccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
..+..+++|++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.+....|..+.++++
T Consensus 74 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC
Confidence 356777888888888888877764 367888888888888887777777888888888888888766666777888888
Q ss_pred CCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeecccc---------------------C
Q 038398 566 LEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDC---------------------G 623 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~---------------------~ 623 (720)
|++|++++|.++.+|.. +.++++|+.|++++| .+..++...+..+++|+.|++.++ +
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 88888888888877653 677777777777763 444454444555555555555432 1
Q ss_pred CCcccchhcccccC-------------CccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCC
Q 038398 624 GSKIERLKINVLFG-------------GHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSK 690 (720)
Q Consensus 624 ~~~l~~l~~~~~~~-------------~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 690 (720)
.|.+..++...+.. ........+..+++|+.|.++.|.+..+. +.....+++|+.|+|++ +.++
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~-N~l~ 309 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE--PYAFRGLNYLRVLNVSG-NQLT 309 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC--TTTBTTCTTCCEEECCS-SCCS
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC--HHHhcCcccCCEEECCC-CcCc
Confidence 23333333211111 11222334677899999999988876542 23445567999999998 5688
Q ss_pred ccccccccccCCcceeeecCCCC
Q 038398 691 SLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 691 ~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
.++...|..+++|+.|+|++|+-
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCE
T ss_pred eeCHhHcCCCcccCEEEccCCCc
Confidence 88877889999999999999873
No 23
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=3.8e-15 Score=157.02 Aligned_cols=290 Identities=14% Similarity=0.116 Sum_probs=169.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-----CCHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-----LQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~ 200 (720)
+.+|||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+.+... .+...+...+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 578999999999999 865 699999999999999999999886 22 2578887643 34444444444
Q ss_pred HHhC--------------C----CCCc----c-----CCCChhHHHHHHHHHhccCcEEEEEecccccc-----cccccc
Q 038398 201 RRIG--------------F----FDES----W-----KNGSLEDKTSDILRILGKKKFLLLLDDIWERV-----DLTKVG 248 (720)
Q Consensus 201 ~~l~--------------~----~~~~----~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~ 248 (720)
..+. . ..+. . ...........+.+... ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 3331 0 0000 0 01223333333333222 49999999996532 222221
Q ss_pred ccCCCCCCCcEEEEEcCChhHhhh----------hc-c-CceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHH
Q 038398 249 IPFPDPENKSKIVFTTHFLEICGA----------LK-A-HEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVA 316 (720)
Q Consensus 249 ~~~~~~~~gs~iiiTtR~~~v~~~----------~~-~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 316 (720)
..+.....+..+|+|++....... .. . ...+++.+|+.+|+.+++...+.... ..... ...|+
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~----~~~i~ 236 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDFKD----YEVVY 236 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCCCC----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCCCc----HHHHH
Confidence 111111246789999997653221 11 1 25789999999999999988653221 11112 28899
Q ss_pred HHhCCcchHHHHHHHHHhcCCChhHHHHH-HHHHhcccCCCCCCCccchhhHH-hhcC--CCCCcchhHHHHhhcCCCCC
Q 038398 317 QECAGLPLALITIGRAMACKKTPQEWHYA-IQVLRRSASEFPGMGKEVYPLLK-FSYD--SLPDDTIRSYLLYCGLFPED 392 (720)
Q Consensus 317 ~~c~GlPLai~~~~~~l~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~~k~~fl~~~~fp~~ 392 (720)
+.|+|+|+++..++..+....+...|... .+.... .+...+. +.++ .+++ ..+..+..+|.-
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~g--- 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSKC--- 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTTC---
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHcC---
Confidence 99999999999998776533333333211 111000 1111111 1111 5666 788899888882
Q ss_pred cccChHHHHHHHH-hhCCCCcccchhhHHhHHHHHHHHHHhccccccCCCCCcccCCceEEEehHHHHHHH
Q 038398 393 YRIRKSELIDCWI-GEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEGGDIGEEESGEHVVKMHDVIRDMV 462 (720)
Q Consensus 393 ~~i~~~~li~~Wi-aeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~~~mHdlv~~~a 462 (720)
. +...+....- ..|. .........+++.|.+.+++...+ ..+..-|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~---------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG---------EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS---------SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC---------CEEEecCHHHHHhh
Confidence 1 3444432110 1121 011245667899999999997653 22333588888753
No 24
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=7.5e-16 Score=165.89 Aligned_cols=296 Identities=13% Similarity=0.080 Sum_probs=179.9
Q ss_pred CCCcCchHHHHHHHHHh-c----C--CCceEEEE--EcCCCChHHHHHHHHHhhhcCC--CCCcC-EEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCL-G----E--EQVGIIGL--YGMGGVGKTTLLTKINNKLLGA--PNVFD-VVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~v~~~~~~~ 193 (720)
+.++||+++++++.+++ . . ...+.+.| +|++|+||||||+.+++..... ...++ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999888 3 1 24456667 9999999999999999876210 00122 46788877777888
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEecccccc--------ccccccccC---CCCC--CCc
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERV--------DLTKVGIPF---PDPE--NKS 258 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~~---~~~~--~gs 258 (720)
.+...++.+++...+. ...+..+....+.+.+. +++++|||||++... .+..+...+ +..+ .+.
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998764321 12344556667777665 679999999997632 122221111 1112 344
Q ss_pred EEEEEcCChhHhhhhc---------cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhC------Ccc
Q 038398 259 KIVFTTHFLEICGALK---------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECA------GLP 323 (720)
Q Consensus 259 ~iiiTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------GlP 323 (720)
.+|+||+...+...+. ....+.+++++.++++++|...+.... .....-.+....|++.|+ |.|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5777887554322111 122389999999999999987653221 111223567889999999 999
Q ss_pred hHHHHHHHHH---h--cCC---ChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCC--CCc
Q 038398 324 LALITIGRAM---A--CKK---TPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFP--EDY 393 (720)
Q Consensus 324 Lai~~~~~~l---~--~~~---~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp--~~~ 393 (720)
..+..+.... + ... +...+..++.. ... ...+.-++..||+ ..+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~---~~~---------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE---NEA---------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH---C---------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---Hhc---------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 7665554321 1 111 22333332221 100 1234446778988 7888888888653 233
Q ss_pred ccChHHHHHHHH--h-hCCCCcccchhhHHhHHHHHHHHHHhccccccC
Q 038398 394 RIRKSELIDCWI--G-EGFLDQYDRSGAYNEGYYIIGILLHACLLEEEG 439 (720)
Q Consensus 394 ~i~~~~li~~Wi--a-eg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (720)
.++...+...+. + .-. .. ..........+++.|...+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMY-NV--KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHS-CC--CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CccHHHHHHHHHHHHHhhc-CC--CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 555555554442 2 111 00 0112244567899999999998764
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=4.9e-17 Score=167.91 Aligned_cols=211 Identities=15% Similarity=0.153 Sum_probs=167.6
Q ss_pred CcccccccceeEEEecccccc-cCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCC
Q 038398 487 APEIQNWRNVRRMSLMKNKIE-NLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLV 564 (720)
Q Consensus 487 ~~~~~~~~~l~~L~l~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 564 (720)
+..+..+++|++|++++|.+. .+|. +..+++|++|++++|.+....+..|.++++|++|+|++|.+.+.+|..++.++
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence 346888999999999999997 4444 57899999999999998866666699999999999999988779999999998
Q ss_pred -CCCEEeccCCCCc-ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCcccc
Q 038398 565 -SLEHLDLSSTAIT-HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFL 642 (720)
Q Consensus 565 -~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~ 642 (720)
+|++|++++|.++ .+|..+..++ |+.|++++| .+...+...++.+++|+.|++.+ |.+.. .
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~---N~l~~------------~ 236 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAK---NSLAF------------D 236 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCS---SEECC------------B
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCC---Cceee------------e
Confidence 9999999999988 7888899987 999999995 44444444578888888888765 44321 1
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCcccc
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
+..+..+++|+.|+++.|.+... ++.....+++|+.|++++++-...+| ....+++|+.|++++|+.+-..+
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGT--LPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEEC--CCGGGGGCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGTCSSSEEESTT
T ss_pred cCcccccCCCCEEECcCCcccCc--CChHHhcCcCCCEEECcCCcccccCC--CCccccccChHHhcCCCCccCCC
Confidence 22256789999999999887632 33445566799999999865444666 34889999999999999775433
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.1e-16 Score=178.53 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=93.3
Q ss_pred cccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCcc-ccCCCCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSG-ISTLVSL 566 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L 566 (720)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++..|+++++|++|+|++|.+. .+|.. ++++++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCC
Confidence 456778888888888887765 3577888888888888888888877888888888888888554 45444 5788888
Q ss_pred CEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeecc
Q 038398 567 EHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMF 620 (720)
Q Consensus 567 ~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~ 620 (720)
++|+|++|.++.+|+ .++++++|++|++++| .+..++ ++.+++|+.|++.
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcc
Confidence 888888888887654 5888888888888884 455554 3455555555443
No 27
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1e-16 Score=158.82 Aligned_cols=207 Identities=14% Similarity=0.228 Sum_probs=157.2
Q ss_pred CccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCC-CcCcchHHhccCCcccEEEccC-CCCCccCCcc
Q 038398 484 LTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNS-LKMSTDDFFQSMPSLRVFNMSN-NHLLWKLPSG 559 (720)
Q Consensus 484 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp~~ 559 (720)
...+|. -..+++.|++++|.+..++. +..+++|++|++++|. ++.+++..|.++++|++|++++ |.+....|..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 445555 33589999999999988765 5789999999999996 8888887799999999999998 7555444567
Q ss_pred ccCCCCCCEEeccCCCCcccchhhhcCCCCC---EEeccCCcCCCCCchhhhhccccCc-eeeccccCCCcccchhcccc
Q 038398 560 ISTLVSLEHLDLSSTAITHLPIELQKLVNLK---CLNLEYMNNLNQFPRLVISAFSKLQ-VLRMFDCGGSKIERLKINVL 635 (720)
Q Consensus 560 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~---~L~l~~~~~l~~lp~~~~~~l~~L~-~L~~~~~~~~~l~~l~~~~~ 635 (720)
+.++++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+..+++|+ .|++.+ |.+..++...
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~---n~l~~i~~~~- 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN---NGFTSVQGYA- 175 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS---CCCCEECTTT-
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC---CCCcccCHhh-
Confidence 8899999999999999999997 88888888 9999996578888876677888888 877764 5554444322
Q ss_pred cCCccccHHHhcCCCCCceeEEEecc-hhhHHHHhhhhhhh-hhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 636 FGGHQFLVEELMGMKHLMVLTITLKS-WQALKELLISQELQ-RSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 636 ~~~~~~~~~~l~~l~~L~~L~~~~~~-~~~l~~l~~~~~~~-~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
+.. ++|+.|.++.|. +..++. ..+..+ ++|+.|++++ +.++.++.. .+++|+.|+++++..
T Consensus 176 ----------~~~-~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~~-N~l~~l~~~---~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 176 ----------FNG-TKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVSQ-TSVTALPSK---GLEHLKELIARNTWT 238 (239)
T ss_dssp ----------TTT-CEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECTT-CCCCCCCCT---TCTTCSEEECTTC--
T ss_pred ----------cCC-CCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECCC-CccccCChh---HhccCceeeccCccC
Confidence 122 578888888773 554321 223444 6899999998 667777733 678999999998875
Q ss_pred C
Q 038398 714 L 714 (720)
Q Consensus 714 l 714 (720)
|
T Consensus 239 l 239 (239)
T 2xwt_C 239 L 239 (239)
T ss_dssp -
T ss_pred C
Confidence 4
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=5.6e-16 Score=156.59 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=146.7
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK 555 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (720)
.+...+.....++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.+++..|.++++|++|+|++|.+.+.
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc
Confidence 34445555666777888899999999999998888788899999999999999888888788999999999999976655
Q ss_pred CCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccc
Q 038398 556 LPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINV 634 (720)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~ 634 (720)
.|..++.+++|++|++++|.++.+|.. +.++++|++|++++| .+..+|...++.+++|+.|++.++ .+..++
T Consensus 125 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~--- 197 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN---QLKSVP--- 197 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS---CCSCCC---
T ss_pred CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC---cCCccC---
Confidence 566688999999999999999988765 688999999999984 677777766678888888887764 333222
Q ss_pred ccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccc
Q 038398 635 LFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLD 693 (720)
Q Consensus 635 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~ 693 (720)
...+..+++|+.|.++.|.+.. .+++|+.|++..++....+|
T Consensus 198 --------~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 198 --------DGVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp --------TTTTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBB
T ss_pred --------HHHHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCccc
Confidence 2235678889999998876531 12355666665543333444
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=6.2e-16 Score=174.60 Aligned_cols=105 Identities=27% Similarity=0.341 Sum_probs=84.3
Q ss_pred EEEEcCCCCccCc--ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCC
Q 038398 476 FLVHAGLGLTEAP--EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNH 551 (720)
Q Consensus 476 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 551 (720)
.+...+......+ .+..+++|+.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 3444444443332 57788899999999999888764 4788999999999999998888878899999999999997
Q ss_pred CCccCCccccCCCCCCEEeccCCCCcccc
Q 038398 552 LLWKLPSGISTLVSLEHLDLSSTAITHLP 580 (720)
Q Consensus 552 ~~~~lp~~i~~l~~L~~L~L~~~~i~~lp 580 (720)
+.+..|..++.+++|++|++++|.++.+|
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 77777778899999999999999888765
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=4.5e-16 Score=166.26 Aligned_cols=91 Identities=27% Similarity=0.361 Sum_probs=52.4
Q ss_pred ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.+.+..|..++.+++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 34555566666666666555432 2455666666666666665555555566666666666665444444555666666
Q ss_pred CEEeccCCCCccc
Q 038398 567 EHLDLSSTAITHL 579 (720)
Q Consensus 567 ~~L~L~~~~i~~l 579 (720)
++|++++|.++.+
T Consensus 168 ~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 168 QNLQLSSNRLTHV 180 (390)
T ss_dssp CEEECCSSCCSBC
T ss_pred CEEECCCCcCCcc
Confidence 6666666655544
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.65 E-value=9.6e-16 Score=159.84 Aligned_cols=223 Identities=21% Similarity=0.322 Sum_probs=136.5
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.....+|.. -.++++.|++++|.+..++. +..+++|++|++++|.++.+.+..|.++++|++|+|++|.+ .
T Consensus 38 l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~ 115 (332)
T 2ft3_A 38 VQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-V 115 (332)
T ss_dssp EECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-C
T ss_pred EECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-C
Confidence 33344444444432 24688999999998887643 57889999999999998888777789999999999999854 4
Q ss_pred cCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCC--CchhhhhccccCceeeccccCCCcccchh
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQ--FPRLVISAFSKLQVLRMFDCGGSKIERLK 631 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~~~~~~~~~l~~l~ 631 (720)
.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++| .+.. ++...+..+ +|+.|++.+ |.+..++
T Consensus 116 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~---n~l~~l~ 188 (332)
T 2ft3_A 116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISE---AKLTGIP 188 (332)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCS---SBCSSCC
T ss_pred ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcC---CCCCccC
Confidence 7777665 7899999999998888754 888999999999884 3332 222223333 444444433 3333332
Q ss_pred ccccc----------CCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccC
Q 038398 632 INVLF----------GGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLR 701 (720)
Q Consensus 632 ~~~~~----------~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~ 701 (720)
...+. .........+..+++|+.|.++.|.+..+.. .....+++|+.|++++ +.+..+| ..+..++
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~-N~l~~lp-~~l~~l~ 264 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--GSLSFLPTLRELHLDN-NKLSRVP-AGLPDLK 264 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGGGCTTCCEEECCS-SCCCBCC-TTGGGCT
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--hHhhCCCCCCEEECCC-CcCeecC-hhhhcCc
Confidence 21110 0011112334455666666666555443221 1223334566666665 3344554 3355566
Q ss_pred CcceeeecCCC
Q 038398 702 NLNKLYVAGCK 712 (720)
Q Consensus 702 ~L~~L~l~~c~ 712 (720)
+|+.|++++|+
T Consensus 265 ~L~~L~l~~N~ 275 (332)
T 2ft3_A 265 LLQVVYLHTNN 275 (332)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCC
Confidence 66666666554
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=5.5e-16 Score=168.99 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=162.8
Q ss_pred ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC
Q 038398 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST 574 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (720)
..+.++..++.+..+|.. -.++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 346788888888887753 2378999999999999998888999999999999999877777789999999999999999
Q ss_pred CCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCC-----------cccc
Q 038398 575 AITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGG-----------HQFL 642 (720)
Q Consensus 575 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~-----------~~~~ 642 (720)
.++.+|.. +.++++|++|++++ +.+..+|...+..+++|+.|++.++.. +..++...+.+. .-..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred cCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEECCCCcccc
Confidence 99999866 88899999999999 567888887788999999999887532 222222111110 0011
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCcccc
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
+..+..+++|+.|++++|.+..+. +..+..+++|+.|++++ +.+..++...|.++++|+.|+|++|. ++.++
T Consensus 211 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 282 (452)
T 3zyi_A 211 MPNLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNN-LSSLP 282 (452)
T ss_dssp CCCCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred cccccccccccEEECcCCcCcccC--cccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCCc-CCccC
Confidence 223556677888888777665432 23344556888888887 55677766778889999999998884 44443
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=8.6e-16 Score=156.50 Aligned_cols=197 Identities=19% Similarity=0.230 Sum_probs=159.8
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC-
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA- 575 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~- 575 (720)
+.++.+++.+..+|. ...++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 578888888888765 335799999999999999998889999999999999997776668899999999999999997
Q ss_pred Cccc-chhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCce
Q 038398 576 ITHL-PIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMV 654 (720)
Q Consensus 576 i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~ 654 (720)
++.+ |..+..+++|++|++++| .+..++...+..+++|++|++.++ .+..++ ...+..+++|+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~-----------~~~~~~l~~L~~ 157 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN---ALQALP-----------DDTFRDLGNLTH 157 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS---CCCCCC-----------TTTTTTCTTCCE
T ss_pred ccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCC---cccccC-----------HhHhccCCCccE
Confidence 8888 667999999999999994 567776555788888888887764 443222 223567899999
Q ss_pred eEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 655 LTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 655 L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
|.++.|.+..+.. .....+++|+.|++++ +.+..+....+.++++|+.|++++|.
T Consensus 158 L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 158 LFLHGNRISSVPE--RAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSSCCCEECT--TTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccCH--HHhcCccccCEEECCC-CcccccCHhHccCcccccEeeCCCCc
Confidence 9999988765432 1244567999999998 45677765789999999999999985
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=7.2e-16 Score=160.67 Aligned_cols=215 Identities=21% Similarity=0.247 Sum_probs=148.2
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+.....+|.. -.++++.|++++|.+..++. +..+++|++|++++|.++.+.+..|.++++|++|+|++|. +.
T Consensus 36 l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 113 (330)
T 1xku_A 36 VQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LK 113 (330)
T ss_dssp EECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CS
T ss_pred EEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CC
Confidence 34444444444431 23578888888888877654 5778888888888888888766668888888888888884 44
Q ss_pred cCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCC--CchhhhhccccCceeeccccCCCcccchh
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQ--FPRLVISAFSKLQVLRMFDCGGSKIERLK 631 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~~~~~~~~~l~~l~ 631 (720)
.+|..+. ++|++|++++|.++.+|.. +.++++|++|++++| .+.. +....+..+++|+.|++.++ .+..++
T Consensus 114 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n---~l~~l~ 187 (330)
T 1xku_A 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT---NITTIP 187 (330)
T ss_dssp BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS---CCCSCC
T ss_pred ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC---ccccCC
Confidence 6776654 6888888888888877654 788888888888874 3332 22233667777777776653 333332
Q ss_pred cccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCC
Q 038398 632 INVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGC 711 (720)
Q Consensus 632 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 711 (720)
.. + .++|+.|.++.|.+..+. +.....+++|+.|++++ +.+..++...+.++++|+.|+|++|
T Consensus 188 ~~------------~--~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 188 QG------------L--PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp SS------------C--CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS
T ss_pred cc------------c--cccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC
Confidence 21 1 267888888887765432 22344557899999998 5577777667899999999999998
Q ss_pred CCCccc
Q 038398 712 KHLEDS 717 (720)
Q Consensus 712 ~~l~~i 717 (720)
. +..+
T Consensus 251 ~-l~~l 255 (330)
T 1xku_A 251 K-LVKV 255 (330)
T ss_dssp C-CSSC
T ss_pred c-CccC
Confidence 5 4444
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=4.9e-16 Score=180.76 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=90.2
Q ss_pred ccccccceeEEEecccccccC-C-CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENL-S-ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|+.|++++|.+... | .+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.+.+.+|..++++++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 456677777777777776532 2 23566777777777777765555556777777777777776666777777777777
Q ss_pred CEEeccCCCCc-ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeecccc
Q 038398 567 EHLDLSSTAIT-HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDC 622 (720)
Q Consensus 567 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~ 622 (720)
++|++++|.++ .+|..++.+++|++|++++|.....+|.. ++.+++|+.|++.++
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCC
Confidence 77777777766 56777777777777777775433355553 666777777666543
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.3e-15 Score=166.27 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=75.0
Q ss_pred EEcCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCc-CcchHHhccCCcccEEEccCCCCCc
Q 038398 478 VHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLK-MSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
...+.+...+|. -.+++++|++++|.+..++ .+..+++|++|++++|.+. .+++..|.++++|++|+|++|.+.+
T Consensus 16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 333444444444 2255666666666665542 2355666666666666543 3344445666666666666665554
Q ss_pred cCCccccCCCCCCEEeccCCCCcc-cchh--hhcCCCCCEEeccCCcCCCCC-chhhhhccccCceeeccc
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITH-LPIE--LQKLVNLKCLNLEYMNNLNQF-PRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~~~~l~~L~~L~~~~ 621 (720)
..|..++++++|++|++++|.++. +|.. +.++++|++|++++| .+..+ |...++.+++|+.|++.+
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTT
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCC
Confidence 455566666666666666666553 2333 555666666666553 33333 322244555555555443
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=2.1e-15 Score=152.37 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=151.6
Q ss_pred cCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 486 EAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 486 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
+......+++++.|++.+|.+..++.+..+++|++|++++|.+..++ .+..+++|++|+|++|.+.+..|..++.+++
T Consensus 33 ~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 33 DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp SEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34456678899999999999998888889999999999999988865 3889999999999999776666666899999
Q ss_pred CCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHH
Q 038398 566 LEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVE 644 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~ 644 (720)
|++|++++|.++.+|.. +.++++|++|++++| .+..+|...++.+++|+.|++.++ .+..++ ..
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~-----------~~ 175 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN---QLQSLP-----------EG 175 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS---CCCCCC-----------TT
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC---CcCccC-----------HH
Confidence 99999999999988765 789999999999995 678888766788889998888765 333222 12
Q ss_pred HhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCC
Q 038398 645 ELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGC 711 (720)
Q Consensus 645 ~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 711 (720)
.+..+++|+.|.++.|.+..+.. .....+++|+.|++++++-. +.+++|+.|++..|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWIN 232 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHH
T ss_pred HhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHH
Confidence 35667888888888877664322 22344567888888774321 23445555555444
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=8.5e-16 Score=174.31 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=67.5
Q ss_pred cceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 494 RNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
+++++|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 455566666655554433 345555666666655555555544555555666666555444444555555555555555
Q ss_pred cCCCCcccc-hhhhcCCCCCEEeccCCcCCC--CCchhhhhccccCceeeccc
Q 038398 572 SSTAITHLP-IELQKLVNLKCLNLEYMNNLN--QFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 572 ~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~--~lp~~~~~~l~~L~~L~~~~ 621 (720)
++|.++.+| ..++++++|++|++++| .+. .+|.. ++.+++|++|++.+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSY 162 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCS
T ss_pred cCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccC
Confidence 555555544 34555555555555553 232 23432 45555555555443
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=8.2e-16 Score=161.85 Aligned_cols=201 Identities=20% Similarity=0.219 Sum_probs=141.5
Q ss_pred cceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccC
Q 038398 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSS 573 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (720)
+.....+++++.+..+|.. -.++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..++++++|++|++++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp CTTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3344578888889888763 336899999999999999887799999999999999977766678899999999999999
Q ss_pred CCCcccchh-hhcCCCCCEEeccCCcCCCCCch-hhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCC
Q 038398 574 TAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKH 651 (720)
Q Consensus 574 ~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 651 (720)
|.++.+|.. +.++++|++|++++ +.+..+|. ..++.+++|++|++.++. .+..++ ...+..+++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~~-----------~~~~~~l~~ 175 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMD--TFTKIQ-----------RKDFAGLTF 175 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESS--SCCEEC-----------TTTTTTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCc--cccccC-----------HHHccCCCC
Confidence 999999877 89999999999999 56778887 457889999999988753 122111 122344555
Q ss_pred CceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 652 LMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 652 L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
|+.|.++.|.+.... +.....+++|+.|++++ +.+..++...+..+++|+.|++++|.
T Consensus 176 L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 176 LEELEIDASDLQSYE--PKSLKSIQNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEEEEETTCCEEC--TTTTTTCSEEEEEEEEC-SCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred CCEEECCCCCcCccC--HHHHhccccCCeecCCC-CccccchhhhhhhcccccEEECCCCc
Confidence 555555555443321 12223334555555554 22444443334445555555555553
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=2.1e-15 Score=157.13 Aligned_cols=203 Identities=16% Similarity=0.178 Sum_probs=137.9
Q ss_pred ccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc--cCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW--KLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L 566 (720)
.+..+++|++|++++|.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|.+.. ..|..+.++++|
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred HhcCCCCCCEEECCCCcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 4666777888888887777665432 2678888888888777777778888888888888886532 556777888888
Q ss_pred CEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHh
Q 038398 567 EHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEEL 646 (720)
Q Consensus 567 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 646 (720)
++|++++|.++.+|..+. ++|++|++++| .+..++...+..+++|+.|++.++ .+..++ ...+
T Consensus 174 ~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~-----------~~~~ 236 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP--PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN---SISAVD-----------NGSL 236 (330)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS---CCCEEC-----------TTTG
T ss_pred CEEECCCCccccCCcccc--ccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC---cCceeC-----------hhhc
Confidence 888888888888876553 78888888874 455554444677777777776653 332221 1235
Q ss_pred cCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccc------cCCcceeeecCCCC
Q 038398 647 MGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAG------LRNLNKLYVAGCKH 713 (720)
Q Consensus 647 ~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~------l~~L~~L~l~~c~~ 713 (720)
..+++|+.|.+++|.+..+ +.....+++|+.|++++ +.++.++...|.. .+.|+.|++++|+.
T Consensus 237 ~~l~~L~~L~L~~N~l~~l---p~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKV---PGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp GGSTTCCEEECCSSCCSSC---CTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCCCCCCEEECCCCcCccC---ChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcc
Confidence 5667788888877766533 33344456778888876 4466666555532 36677777777764
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.63 E-value=3.1e-15 Score=169.65 Aligned_cols=126 Identities=20% Similarity=0.297 Sum_probs=108.8
Q ss_pred ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|++|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 57889999999999999988743 5789999999999999999988789999999999999997766666889999999
Q ss_pred CEEeccCCCCc--ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCc
Q 038398 567 EHLDLSSTAIT--HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQ 615 (720)
Q Consensus 567 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~ 615 (720)
++|++++|.++ .+|..++++++|++|++++| .+..++...++.+++|+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENP 180 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCT
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccc
Confidence 99999999998 47999999999999999995 56666554466666654
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=166.31 Aligned_cols=211 Identities=16% Similarity=0.216 Sum_probs=159.7
Q ss_pred ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC
Q 038398 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST 574 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (720)
..+.++..++.+..+|.. -.++++.|++++|.++.+++..|.++++|++|+|++|.+....|..|.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 356788888888888763 2378999999999999998888999999999999999777666788999999999999999
Q ss_pred CCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCC-----------cccc
Q 038398 575 AITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGG-----------HQFL 642 (720)
Q Consensus 575 ~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~-----------~~~~ 642 (720)
.++.+|. .|..+++|++|++++ +.+..+|...+..+++|+.|++.++.. +..++...+.+. .-..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred cCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCcc
Confidence 9999986 489999999999999 567888877788999999999887532 222222111110 0111
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
+..+..+++|+.|+++.|.+..+. +..+..+++|+.|++++ +.+..++...|.++++|+.|+|++|.
T Consensus 200 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 200 IPNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CCCCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred ccccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCC
Confidence 223556677777777777665432 23344556888888887 55677776778888899999998874
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.5e-16 Score=182.30 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=88.6
Q ss_pred ccccccceeEEEeccccccc------------------CCCC-C--CCCcccEEEccCCCCcCcchHHhccCCcccEEEc
Q 038398 489 EIQNWRNVRRMSLMKNKIEN------------------LSET-P--TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNM 547 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 547 (720)
.+..+++|+.|++++|.+.. +|.. . .+++|++|++++|.+....|..|.++++|++|+|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46677778888888887776 5553 3 6777888888877655555555777778888888
Q ss_pred cCCC-CCc-cCCccccCCC-------CCCEEeccCCCCcccch--hhhcCCCCCEEeccCCcCCCCCchhhhhccccCce
Q 038398 548 SNNH-LLW-KLPSGISTLV-------SLEHLDLSSTAITHLPI--ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQV 616 (720)
Q Consensus 548 ~~~~-~~~-~lp~~i~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~ 616 (720)
++|+ +.+ .+|..++.+. +|++|+|++|.++.+|. .++++++|+.|++++| .+..+|. ++.+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~--~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA--FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCCC--CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccchh--hcCCCcceE
Confidence 7776 555 5666555554 77777777777777776 6777777777777764 3446662 556666665
Q ss_pred eeccc
Q 038398 617 LRMFD 621 (720)
Q Consensus 617 L~~~~ 621 (720)
|++.+
T Consensus 600 L~Ls~ 604 (876)
T 4ecn_A 600 LKLDY 604 (876)
T ss_dssp EECCS
T ss_pred EECcC
Confidence 55544
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=4.4e-15 Score=161.36 Aligned_cols=221 Identities=17% Similarity=0.146 Sum_probs=149.3
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK 555 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (720)
.+...+......|.+..+++|++|++++|.+..++ +..+++|++|++++|.++.++ +.++++|++|++++|.+. .
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~-~ 120 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT-K 120 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCS-C
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCC-e
Confidence 44445555556667888889999999999888875 778889999999999888874 788899999999998555 4
Q ss_pred CCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccc
Q 038398 556 LPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL 635 (720)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~ 635 (720)
+| ++.+++|++|++++|.++.+| ++++++|+.|++++|..+..++ ++.+++|+.|++.++ .+..++....
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n---~l~~l~l~~l 190 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN---KITELDVSQN 190 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS---CCCCCCCTTC
T ss_pred ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC---ccceeccccC
Confidence 55 888899999999999888875 7888899999998876666663 567778887777654 3333332111
Q ss_pred cCCc-------cccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccC-------
Q 038398 636 FGGH-------QFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLR------- 701 (720)
Q Consensus 636 ~~~~-------~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~------- 701 (720)
.... ...-..++.+++|+.|+++.|.+..++ ...+++|+.|++++ +.++.++...+.++.
T Consensus 191 ~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSV-NPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp TTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCS-SCCSCCCCTTCTTCCEEECTTC
T ss_pred CCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeC-CcCCCcCHHHCCCCCEEeccCC
Confidence 1000 000013556677777777777666532 33445777777776 445555544444433
Q ss_pred CcceeeecCCCCCccc
Q 038398 702 NLNKLYVAGCKHLEDS 717 (720)
Q Consensus 702 ~L~~L~l~~c~~l~~i 717 (720)
+|+.|++++|+.+..+
T Consensus 265 ~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp CCSCCCCTTCTTCCEE
T ss_pred CCCEEECCCCccCCcc
Confidence 4556666666554443
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=1.4e-15 Score=172.44 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=69.7
Q ss_pred ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|++|++++|.+..+.. +.++++|++|++++|.+..+++..|.++++|++|++++|.+.+..|..++++++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 34555566666666665544321 3555666666666665555555555666666666666664443334555666666
Q ss_pred CEEeccCCCCcccc-hhhhcCCCCCEEeccCCcCCCCCchhhhhccccCc
Q 038398 567 EHLDLSSTAITHLP-IELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQ 615 (720)
Q Consensus 567 ~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~ 615 (720)
++|++++|.++.++ +.+..+++|++|++++ +.+..++...++.+++|+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCC
T ss_pred cEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccc
Confidence 66666666665542 2233366666666665 344444444456666666
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=3.6e-15 Score=163.20 Aligned_cols=100 Identities=18% Similarity=0.403 Sum_probs=64.9
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL 556 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (720)
+...+.....++.+..+++|++|++++|.+..++.+..+++|++|++++|.+..+++ +.++++|++|++++|.+. .+
T Consensus 51 L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~ 127 (466)
T 1o6v_A 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DI 127 (466)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CC
T ss_pred EecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CC
Confidence 333444445556666777777777777777766666677777777777777766665 667777777777777433 34
Q ss_pred CccccCCCCCCEEeccCCCCcccc
Q 038398 557 PSGISTLVSLEHLDLSSTAITHLP 580 (720)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~i~~lp 580 (720)
|. +..+++|++|++++|.++.+|
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECCCG
T ss_pred hH-HcCCCCCCEEECCCCccCCCh
Confidence 42 666666666666666655544
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=8.2e-16 Score=158.74 Aligned_cols=198 Identities=18% Similarity=0.175 Sum_probs=153.6
Q ss_pred cccceeEEEeccccccc-CCCC---CCCCcccEEEccCCCCcCcchHHhccC-----CcccEEEccCCCCCccCCccccC
Q 038398 492 NWRNVRRMSLMKNKIEN-LSET---PTCPHLLSLFLSDNSLKMSTDDFFQSM-----PSLRVFNMSNNHLLWKLPSGIST 562 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~~lp~~i~~ 562 (720)
.+++|++|++++|.+.. +|.. ..+++|++|++++|.++..+ ..+..+ ++|++|+|++|.+.+..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46789999999999974 4442 67899999999999998885 447766 99999999999877767789999
Q ss_pred CCCCCEEeccCCCCcc---cchhh--hcCCCCCEEeccCCcCCCCCch---hhhhccccCceeeccccCCCcccchhccc
Q 038398 563 LVSLEHLDLSSTAITH---LPIEL--QKLVNLKCLNLEYMNNLNQFPR---LVISAFSKLQVLRMFDCGGSKIERLKINV 634 (720)
Q Consensus 563 l~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~~~~~~~~~l~~l~~~~ 634 (720)
+++|++|++++|++.. +|..+ .++++|++|++++| .+..++. ..+..+++|+.|++.+ |.+.....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~-- 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSH---NSLRDAAG-- 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTT---SCCCSSCC--
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCC---CcCCcccc--
Confidence 9999999999998753 45565 89999999999994 5664443 3345668888887775 44432210
Q ss_pred ccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 635 LFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 635 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
...+..+++|+.|+++.|.+..++ .... ++|+.|++++ +.++.+| .+..+++|+.|+|++|+
T Consensus 246 --------~~~~~~l~~L~~L~Ls~N~l~~ip---~~~~--~~L~~L~Ls~-N~l~~~p--~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 --------APSCDWPSQLNSLNLSFTGLKQVP---KGLP--AKLSVLDLSY-NRLDRNP--SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------CSCCCCCTTCCEEECTTSCCSSCC---SSCC--SEEEEEECCS-SCCCSCC--CTTTSCEEEEEECTTCT
T ss_pred --------hhhhhhcCCCCEEECCCCccChhh---hhcc--CCceEEECCC-CCCCCCh--hHhhCCCCCEEeccCCC
Confidence 112345689999999999887443 2222 6999999998 6677776 38899999999999997
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=3.4e-16 Score=154.97 Aligned_cols=196 Identities=14% Similarity=0.240 Sum_probs=152.0
Q ss_pred ccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC-CccccCCCCCCEEeccC-CCCcccc
Q 038398 503 KNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL-PSGISTLVSLEHLDLSS-TAITHLP 580 (720)
Q Consensus 503 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~L~~-~~i~~lp 580 (720)
.+.+..+|. -.++|+.|++++|.++.+++..|.++++|++|++++|..+..+ +..+.++++|++|++++ |.++.+|
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 334677776 3458999999999999999888999999999999999634455 45789999999999998 8999987
Q ss_pred h-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCC-cccchhcccccCCccccHHHhcCCCCCc-eeEE
Q 038398 581 I-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGS-KIERLKINVLFGGHQFLVEELMGMKHLM-VLTI 657 (720)
Q Consensus 581 ~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~-~l~~l~~~~~~~~~~~~~~~l~~l~~L~-~L~~ 657 (720)
. .|.++++|++|++++ +.+..+|. ++.+++|+.|...+++.| .+..++. ..+..+++|+ .|.+
T Consensus 98 ~~~f~~l~~L~~L~l~~-n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-----------~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFN-TGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-----------NAFQGLCNETLTLKL 163 (239)
T ss_dssp TTSEECCTTCCEEEEEE-ECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-----------TTTTTTBSSEEEEEC
T ss_pred HHHhCCCCCCCEEeCCC-CCCccccc--cccccccccccEEECCCCcchhhcCc-----------ccccchhcceeEEEc
Confidence 5 588999999999999 46788887 788888883333444445 5544432 2356788999 9999
Q ss_pred EecchhhHHHHhhhhhhhhhccccccccccCCCcccccccccc-CCcceeeecCCCCCcccc
Q 038398 658 TLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGL-RNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 658 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~i~ 718 (720)
+.|.+..++.. .... ++|+.|+++++..++.++...|.++ ++|+.|++++|+ ++.++
T Consensus 164 ~~n~l~~i~~~--~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~ 221 (239)
T 2xwt_C 164 YNNGFTSVQGY--AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALP 221 (239)
T ss_dssp CSCCCCEECTT--TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCC
T ss_pred CCCCCcccCHh--hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCC
Confidence 98887655431 2223 5899999998656888887789999 999999999976 44444
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3.1e-15 Score=173.18 Aligned_cols=233 Identities=15% Similarity=0.192 Sum_probs=139.8
Q ss_pred cEEEEcCCCCccCcc---cccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCc-ccEEEccCC
Q 038398 475 NFLVHAGLGLTEAPE---IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPS-LRVFNMSNN 550 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~~ 550 (720)
..+...+.....+|. +..+++|+.|++++|.+..+|.+..+++|+.|++++|.+..+|.. +.++++ |++|+|++|
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSS
T ss_pred cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCC
Confidence 344555555556655 778888888888888888888777888888888888888766655 777777 888888888
Q ss_pred CCCccCCccccCCCC--CCEEeccCCCCcccch----hhh--cCCCCCEEeccCCcCCCCCchhhhhccccCceeecccc
Q 038398 551 HLLWKLPSGISTLVS--LEHLDLSSTAITHLPI----ELQ--KLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDC 622 (720)
Q Consensus 551 ~~~~~lp~~i~~l~~--L~~L~L~~~~i~~lp~----~i~--~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~ 622 (720)
.+. .+|..++.+.. |++|++++|.++..++ .+. .+++|+.|++++ +.+..+|...+..+++|+.|++.++
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~-N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS-SCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC-CcCCccCHHHHccCCCCCEEECCCC
Confidence 544 77766665543 6666666666543221 122 233566666665 3445566554445556665555443
Q ss_pred CCCcccchhcccccCC-------------------ccccHHHhc--CCCCCceeEEEecchhhHHHHhhhhhhhhhcccc
Q 038398 623 GGSKIERLKINVLFGG-------------------HQFLVEELM--GMKHLMVLTITLKSWQALKELLISQELQRSTQSL 681 (720)
Q Consensus 623 ~~~~l~~l~~~~~~~~-------------------~~~~~~~l~--~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L 681 (720)
.+..++...+... -..++..+. .+++|+.|+++.|.+.. ++.....+++|+.|
T Consensus 708 ---~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~---lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 708 ---LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS---FPTQPLNSSQLKAF 781 (876)
T ss_dssp ---CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS---CCCGGGGCTTCCEE
T ss_pred ---cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc---cchhhhcCCCCCEE
Confidence 2222222211100 011233444 67777777777776665 33444455677777
Q ss_pred ccccc------cCCCccccccccccCCcceeeecCCCCCcccc
Q 038398 682 FLRCF------NDSKSLDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 682 ~l~~~------~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
+|+++ +....+| ..+.++++|+.|+|++|.. ..||
T Consensus 782 ~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp ECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCC-CBCC
T ss_pred ECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCC-CccC
Confidence 77652 2223333 5566777777777777764 5554
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=1.7e-15 Score=176.17 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=141.1
Q ss_pred cccccccceeEEEeccccccc-CCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIEN-LSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
..+..+++|+.|++++|.+.. +|. +..+++|++|++++|.+.+..+..+.++++|++|+|++|++.+.+|..++.+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 356677788888888887763 332 356778888888888777666666788888888888888777778888888888
Q ss_pred CCEEeccCCCCc-ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeec-------------------------
Q 038398 566 LEHLDLSSTAIT-HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRM------------------------- 619 (720)
Q Consensus 566 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~------------------------- 619 (720)
|++|++++|.++ .+|..++++++|+.|++++|.....+|.. +..+..+..+..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA-MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG-GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH-Hhcccchhhhhcccccccccccccccccccccccccc
Confidence 888888888776 67777888888888888886554467764 333222221111
Q ss_pred ------------------------------------------cccCCCcccchhcccccCCccccHHHhcCCCCCceeEE
Q 038398 620 ------------------------------------------FDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTI 657 (720)
Q Consensus 620 ------------------------------------------~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~ 657 (720)
.+++.|. .....+..++.++.|+.|++
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-----------l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-----------LSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-----------CBSCCCGGGGGCTTCCEEEC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc-----------ccccCCHHHhccccCCEEeC
Confidence 1111111 12234556677777777777
Q ss_pred EecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCccc
Q 038398 658 TLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDS 717 (720)
Q Consensus 658 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i 717 (720)
+.|.+.. .++.....+++|+.|+|++++-...+| ..+.++++|+.|+|++|+--..|
T Consensus 664 s~N~l~g--~ip~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 664 GHNDISG--SIPDEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CSSCCCS--CCCGGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEEC
T ss_pred cCCccCC--CCChHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccC
Confidence 7776642 233445555677888887744333444 66777888888888877644333
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=4.4e-16 Score=160.47 Aligned_cols=178 Identities=23% Similarity=0.243 Sum_probs=111.5
Q ss_pred ccceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcch-HHhccCCcccEEEccCCCCCccCCccccCCCCCCEEe
Q 038398 493 WRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTD-DFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (720)
+++|++|++++|.+..++. +..+++|++|++++|.++.+++ ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 3444444444444443332 3456667777777766666554 3466777777777777766555666677777777777
Q ss_pred ccCCCCcc--cchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcC
Q 038398 571 LSSTAITH--LPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMG 648 (720)
Q Consensus 571 L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 648 (720)
+++|.++. +|..+..+++|++|++++| .+..++...+..+++|+.|++.+ |.+..++ ...+..
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~-----------~~~~~~ 221 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH---NNFFSLD-----------TFPYKC 221 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT---SCCSBCC-----------SGGGTT
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCC---CccCccC-----------hhhccC
Confidence 77777664 5666777777777777773 45555443466666666666654 3332221 223677
Q ss_pred CCCCceeEEEecchhhHHHHhhhhh-hhhhcccccccccc
Q 038398 649 MKHLMVLTITLKSWQALKELLISQE-LQRSTQSLFLRCFN 687 (720)
Q Consensus 649 l~~L~~L~~~~~~~~~l~~l~~~~~-~~~~L~~L~l~~~~ 687 (720)
+++|+.|++++|.+.... +.... .+++|+.|++++++
T Consensus 222 l~~L~~L~L~~N~l~~~~--~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCCBCS--SSSCCCCCTTCCEEECTTCC
T ss_pred cccCCEeECCCCCCcccC--HHHHHhhhccCCEEEccCCC
Confidence 899999999988775432 11222 23589999999855
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=1.4e-15 Score=158.59 Aligned_cols=214 Identities=19% Similarity=0.179 Sum_probs=159.4
Q ss_pred cceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccC
Q 038398 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSS 573 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (720)
.+++.++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|..++++++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 36889999999998887643 47999999999999999887799999999999999987777789999999999999999
Q ss_pred CCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCC-----------cccc
Q 038398 574 TAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGG-----------HQFL 642 (720)
Q Consensus 574 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~-----------~~~~ 642 (720)
|.++.+|..+. ++|++|++++ +.+..+|...+..+++|+.|++.++..... .+....+... -...
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-GFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-GSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-CCCcccccCCccCEEECcCCCCCcc
Confidence 99999998765 8999999999 567888877688899999998876433210 0111111100 0000
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCcccc
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
+..+ .++|+.|.++.|.+..+. ......+++|+.|++++ +.+..++...+..+++|+.|++++|. +..++
T Consensus 188 ~~~~--~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp 257 (332)
T 2ft3_A 188 PKDL--PETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNK-LSRVP 257 (332)
T ss_dssp CSSS--CSSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSC-CCBCC
T ss_pred Cccc--cCCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCc-CeecC
Confidence 1111 157778888777665432 12334556899999998 55777775678899999999999885 44443
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=4.2e-15 Score=149.97 Aligned_cols=194 Identities=22% Similarity=0.314 Sum_probs=141.0
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLL 553 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (720)
.+...+.....+|.. -.+++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+.
T Consensus 20 ~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred EEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC
Confidence 444455555555532 23578999999998887764 577889999999999888888887888999999999998665
Q ss_pred ccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhc
Q 038398 554 WKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKI 632 (720)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~ 632 (720)
...+..+..+++|++|++++|.++.+|.. +.++++|++|++++ +.+..+|...++.+++|+.|++.++ .+..++.
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~ 174 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN---QLKRVPE 174 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS---CCSCCCT
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC---cCcEeCh
Confidence 54455678889999999999998888654 78889999999988 4677788766778888888877654 3333222
Q ss_pred ccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccccc
Q 038398 633 NVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 633 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
..+..+++|+.|+++.|.+..++. .....+++|+.|++++++
T Consensus 175 -----------~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 -----------GAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred -----------hHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCC
Confidence 224567788888888776654332 123345678888887754
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=2.4e-15 Score=168.43 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=147.0
Q ss_pred cCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCC
Q 038398 480 AGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLP 557 (720)
Q Consensus 480 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 557 (720)
.+.....+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|
T Consensus 13 ~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 13 RSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp TTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence 34445555542 2378999999999998764 35889999999999999999988889999999999999997776666
Q ss_pred ccccCCCCCCEEeccCCCCcc--cchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccc
Q 038398 558 SGISTLVSLEHLDLSSTAITH--LPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL 635 (720)
Q Consensus 558 ~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~ 635 (720)
..++++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++.+++|++|++.++....
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------- 162 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--------- 162 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---------
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc---------
Confidence 669999999999999999985 467799999999999999766777876557888888888887644221
Q ss_pred cCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccccc
Q 038398 636 FGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 636 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
..+..+..+++|+.|.+..+....++... ...+++|+.|++++++
T Consensus 163 -----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 163 -----YQSQSLKSIRDIHHLTLHLSESAFLLEIF--ADILSSVRYLELRDTN 207 (549)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSBSTTHHHHH--HHSTTTBSEEEEESCB
T ss_pred -----cChhhhhccccCceEecccCcccccchhh--HhhcccccEEEccCCc
Confidence 22334667778888888877765554432 2234678888887743
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=2.3e-15 Score=164.32 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=54.0
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCccc
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDS 717 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i 717 (720)
...+..+++|+.|++++|.+..+. +.....+++|+.|++++ +.++.++...+.++++|+.|+|++|+---++
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALG--DQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred hhHhcCcccCCEEECCCCcccccC--hhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 445677889999999988775442 23344567899999998 5677888667889999999999988754443
No 56
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=9.4e-15 Score=145.66 Aligned_cols=175 Identities=18% Similarity=0.251 Sum_probs=123.0
Q ss_pred ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC
Q 038398 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST 574 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (720)
..++++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|+|++|.+.+..|..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4567888888888776532 267888888888888888777888888888888888776666667888888888888888
Q ss_pred CCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCc
Q 038398 575 AITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLM 653 (720)
Q Consensus 575 ~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~ 653 (720)
.++.+|.. +..+++|++|++++ +.+..+|...++.+++|+.|++.+ |.+..++. ..+..+++|+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~~-----------~~~~~l~~L~ 158 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNT---NQLQSIPA-----------GAFDKLTNLQ 158 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS---SCCCCCCT-----------TTTTTCTTCC
T ss_pred cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcC---CcCCccCH-----------HHcCcCcCCC
Confidence 88887744 67888888888888 467777776567777777777665 44332221 1245566677
Q ss_pred eeEEEecchhhHHHHhhhhhhhhhcccccccccc
Q 038398 654 VLTITLKSWQALKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 654 ~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
.|+++.|.+..+.. .....+++|+.|++++++
T Consensus 159 ~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 159 TLSLSTNQLQSVPH--GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECCSSCCSCCCT--TTTTTCTTCCEEECCSCC
T ss_pred EEECCCCcCCccCH--HHHhCCCCCCEEEeeCCc
Confidence 77776665543321 122334566777776643
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=9.9e-15 Score=159.66 Aligned_cols=199 Identities=20% Similarity=0.230 Sum_probs=125.9
Q ss_pred CCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccC
Q 038398 483 GLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGIST 562 (720)
Q Consensus 483 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~ 562 (720)
.....+.+..+++|++|++++|.+..++....+++|+.|++++|.++.++. +..+++|++|++++|.+.+..| +..
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh--hhcCCCCCEEECCCCccccchh--hhc
Confidence 334444555666666666666666655555556667777777666655532 5666777777777764443322 666
Q ss_pred CCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCcccc
Q 038398 563 LVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFL 642 (720)
Q Consensus 563 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~ 642 (720)
+++|++|++++|.++.+|. +..+++|+.|++++| .+..++. ++.+++|+.|++.++.... +
T Consensus 264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~---~------------ 324 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLYFNNISD---I------------ 324 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEECCSSCCSC---C------------
T ss_pred CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEECcCCcCCC---c------------
Confidence 6777777777777766665 666777777777663 4555554 5666666666665543221 1
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
..+..+++|+.|.++.|.+..+. ....+++|+.|++++|+ +..++ .+..+++|+.|++++|+
T Consensus 325 -~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 325 -SPVSSLTKLQRLFFYNNKVSDVS----SLANLTNINWLSAGHNQ-ISDLT--PLANLTRITQLGLNDQA 386 (466)
T ss_dssp -GGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSC-CCBCG--GGTTCTTCCEEECCCEE
T ss_pred -hhhccCccCCEeECCCCccCCch----hhccCCCCCEEeCCCCc-cCccc--hhhcCCCCCEEeccCCc
Confidence 11556788888888887776652 33445688888888754 44444 37788888888888875
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=4.3e-15 Score=168.49 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=137.6
Q ss_pred cccccccceeEEEecccccccC--CCCCCCCcccEEEccCCCCcCcchHHhccCCccc--EEEccCCCCCccC-------
Q 038398 488 PEIQNWRNVRRMSLMKNKIENL--SETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLR--VFNMSNNHLLWKL------- 556 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~L~~~~~~~~l------- 556 (720)
..+..+++|++|++++|.+..+ +....+++|++|++++|.++.+++..|..+++|+ .|++++|.+.+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 3466777888888888887765 4555678888888888887777776677777777 6666666433322
Q ss_pred --------------------------------------------------------------------CccccCCCCCCE
Q 038398 557 --------------------------------------------------------------------PSGISTLVSLEH 568 (720)
Q Consensus 557 --------------------------------------------------------------------p~~i~~l~~L~~ 568 (720)
|..++.+++|++
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 223566777888
Q ss_pred EeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccc-----------c-
Q 038398 569 LDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL-----------F- 636 (720)
Q Consensus 569 L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~-----------~- 636 (720)
|++++|.++.+|..+.++++|++|++++| .+..++...++.+++|++|++.++.... .++...+ .
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCC--BCCSSTTTTCTTCCEEECCS
T ss_pred EeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccc--ccchhhhhccCcCCEEECCC
Confidence 88888877778777777788888888774 4555544446777777777776543220 1111000 0
Q ss_pred -CCcccc--HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 637 -GGHQFL--VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 637 -~~~~~~--~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
...... ...+..+++|+.|.++.|...... +.....+++|+.|+++++......+...+.++++|+.|++++|..
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC--TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCC--HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 001111 334566777777777766554321 223344567788888774432233333477788888888888753
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.59 E-value=5e-16 Score=176.43 Aligned_cols=220 Identities=13% Similarity=0.177 Sum_probs=143.8
Q ss_pred ccccccceeEEEeccccccc------------------CCCC-C--CCCcccEEEccCCCCcCcchHHhccCCcccEEEc
Q 038398 489 EIQNWRNVRRMSLMKNKIEN------------------LSET-P--TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNM 547 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 547 (720)
.+..+++|++|++++|.+.. +|.. . ++++|++|++++|.+....|..|.++++|++|+|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 46677888888888888877 6654 5 6888888888888766655556788888888888
Q ss_pred cCCC-CCc-cCCccccCC------CCCCEEeccCCCCcccch--hhhcCCCCCEEeccCCcCCC-CCchhhhhccccCce
Q 038398 548 SNNH-LLW-KLPSGISTL------VSLEHLDLSSTAITHLPI--ELQKLVNLKCLNLEYMNNLN-QFPRLVISAFSKLQV 616 (720)
Q Consensus 548 ~~~~-~~~-~lp~~i~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~l~~L~~ 616 (720)
++|+ +.+ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++| .+. .+| .++.+++|+.
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~~~l~~L~~ 357 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP--AFGSEIKLAS 357 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC--CCEEEEEESE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh--hhCCCCCCCE
Confidence 8886 555 678777776 888888888888888887 7888888888888874 444 666 2666676666
Q ss_pred eeccccCCCcccchhccccc--C-C---------ccccHHHhcC--CCCCceeEEEecchhhHHHHhhhhh-------hh
Q 038398 617 LRMFDCGGSKIERLKINVLF--G-G---------HQFLVEELMG--MKHLMVLTITLKSWQALKELLISQE-------LQ 675 (720)
Q Consensus 617 L~~~~~~~~~l~~l~~~~~~--~-~---------~~~~~~~l~~--l~~L~~L~~~~~~~~~l~~l~~~~~-------~~ 675 (720)
|++.+ |.+..++..... . + -..++..+.. +++|+.|.++.|.+.... +.... .+
T Consensus 358 L~L~~---N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 LNLAY---NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD--GKNFDPLDPTPFKG 432 (636)
T ss_dssp EECCS---SEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT--TCSSCTTCSSCCCC
T ss_pred EECCC---CccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc--hhhhcccccccccC
Confidence 66554 333333211000 0 0 0011112222 236777777766654321 11111 33
Q ss_pred hhccccccccccCCCccccccccccCCcceeeecCCCCCcccc
Q 038398 676 RSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 676 ~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
.+|+.|++++ +.+..++...+..+++|+.|+|++|..- .++
T Consensus 433 ~~L~~L~Ls~-N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 433 INVSSINLSN-NQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCEEEEECCS-SCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred CCCCEEECcC-CccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 4788888887 4566777556777889999999988643 444
No 60
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.4e-15 Score=158.87 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=45.9
Q ss_pred ceeEEEecccccccC-CCCCCCCcccEEEccCCCCcCc-chHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEecc
Q 038398 495 NVRRMSLMKNKIENL-SETPTCPHLLSLFLSDNSLKMS-TDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (720)
+++.|++.+|.+... +....+++|++|++++|.+... .+..+..+++|++|+|++|.+....|..++.+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 344444444444332 1223344455555555443322 22234444555555555544333444444445555555555
Q ss_pred CC-CCc--ccchhhhcCCCCCEEeccCC
Q 038398 573 ST-AIT--HLPIELQKLVNLKCLNLEYM 597 (720)
Q Consensus 573 ~~-~i~--~lp~~i~~l~~L~~L~l~~~ 597 (720)
+| .++ .+|..+.++++|++|++++|
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 54 344 23444444555555555443
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.59 E-value=8.8e-15 Score=171.97 Aligned_cols=143 Identities=17% Similarity=0.274 Sum_probs=79.6
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCC-CCcCcchHHhccCCcccEEEccCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDN-SLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
.+...+.+...+|. .++++++|++++|.+..+. .+.++++|++|++++| ....+++..|.++++|++|+|++|.+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 44445555555665 4466777777777665542 2355666666666666 33334444466666666666666655
Q ss_pred CccCCccccCCCCCCEEeccCCCCcc-cchh--hhcCCCCCEEeccCCcCCCCC-chhhhhccccCceeeccc
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITH-LPIE--LQKLVNLKCLNLEYMNNLNQF-PRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~l-p~~~~~~l~~L~~L~~~~ 621 (720)
.+..|..|+++++|++|+|++|.++. +|.. +.++++|++|++++| .+..+ +...++.+++|++|++.+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEES
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCC
Confidence 55556666666666666666666553 3333 556666666666653 23333 212245555555555543
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=161.62 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=93.9
Q ss_pred cEEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
+.+...+.....+|.... +++++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 344455555555554222 789999999999887753 57889999999999998888777789999999999999955
Q ss_pred CccCCccccCCCCCCEEeccCCCCcc--cchhhhcCCCCCEEeccCC
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITH--LPIELQKLVNLKCLNLEYM 597 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~ 597 (720)
. .+|.. .+++|++|++++|.++. +|..++++++|++|++++|
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred e-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 4 67766 78999999999998885 5678899999999988874
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.59 E-value=3.9e-15 Score=169.10 Aligned_cols=207 Identities=14% Similarity=0.180 Sum_probs=109.8
Q ss_pred cCcccccccceeEEEecccccccCCC-CCCCCc-ccEEEccCCCCcCcchHHhccCC--cccEEEccCCCCCccCCcccc
Q 038398 486 EAPEIQNWRNVRRMSLMKNKIENLSE-TPTCPH-LLSLFLSDNSLKMSTDDFFQSMP--SLRVFNMSNNHLLWKLPSGIS 561 (720)
Q Consensus 486 ~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~~lp~~i~ 561 (720)
.+|.+..+++|+.|++++|.+..+|. +..+++ |+.|++++|.++.+|.. +..++ +|++|++++|.+.+..|..++
T Consensus 345 ~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp ECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred chhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCCcCCCcchhhhc
Confidence 34455555666666666666655543 244555 66666666666655442 33332 566666666666666666665
Q ss_pred -------CCCCCCEEeccCCCCcccchhh-hcCCCCCEEeccCCcCCCCCchhhhhccc-------cCceeeccccCCCc
Q 038398 562 -------TLVSLEHLDLSSTAITHLPIEL-QKLVNLKCLNLEYMNNLNQFPRLVISAFS-------KLQVLRMFDCGGSK 626 (720)
Q Consensus 562 -------~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~~~~~~l~-------~L~~L~~~~~~~~~ 626 (720)
.+++|++|++++|.++.+|..+ ..+++|++|++++| .+..+|...+..+. +|+.|++.+ |.
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~---N~ 499 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRF---NK 499 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCS---SC
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcC---Cc
Confidence 5566666666666666666553 34666666666663 44556554332221 455554443 33
Q ss_pred ccchhcccccCCccccHHHhc--CCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccc------ccCCCcccccccc
Q 038398 627 IERLKINVLFGGHQFLVEELM--GMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRC------FNDSKSLDIFCLA 698 (720)
Q Consensus 627 l~~l~~~~~~~~~~~~~~~l~--~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~------~~~l~~l~~~~l~ 698 (720)
+..++ ..+. .+++|+.|.++.|.+.. ++.....+++|+.|++++ ++....+| ..+.
T Consensus 500 l~~lp------------~~~~~~~l~~L~~L~Ls~N~l~~---ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~ 563 (636)
T 4eco_A 500 LTKLS------------DDFRATTLPYLVGIDLSYNSFSK---FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGIT 563 (636)
T ss_dssp CCBCC------------GGGSTTTCTTCCEEECCSSCCSS---CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGG
T ss_pred CCccC------------hhhhhccCCCcCEEECCCCCCCC---cChhhhcCCCCCEEECCCCcccccCcccccCh-HHHh
Confidence 33322 2232 45566666666655543 233333445566666532 11122333 4455
Q ss_pred ccCCcceeeecCCCC
Q 038398 699 GLRNLNKLYVAGCKH 713 (720)
Q Consensus 699 ~l~~L~~L~l~~c~~ 713 (720)
++++|+.|+|++|..
T Consensus 564 ~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI 578 (636)
T ss_dssp GCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCcC
Confidence 555666666655553
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=8.8e-15 Score=139.99 Aligned_cols=154 Identities=13% Similarity=0.198 Sum_probs=129.7
Q ss_pred cccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEE
Q 038398 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (720)
...++++++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3677899999999999998888889999999999999876665 38899999999999998877788899999999999
Q ss_pred eccCCCCcc-cchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcC
Q 038398 570 DLSSTAITH-LPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMG 648 (720)
Q Consensus 570 ~L~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 648 (720)
++++|.++. .|..+..+++|++|++++|..+..+|. +..+++|+.|++.++. +..++ .+..
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~---i~~~~-------------~l~~ 179 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG---VHDYR-------------GIED 179 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBC---CCCCT-------------TGGG
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCC---CcChH-------------Hhcc
Confidence 999999985 677899999999999999765888885 8899999999887654 32211 4667
Q ss_pred CCCCceeEEEecchh
Q 038398 649 MKHLMVLTITLKSWQ 663 (720)
Q Consensus 649 l~~L~~L~~~~~~~~ 663 (720)
+++|+.|.+++|.+.
T Consensus 180 l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 180 FPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEEECBC---
T ss_pred CCCCCEEEeeCcccC
Confidence 889999999988764
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=4.9e-15 Score=160.97 Aligned_cols=203 Identities=15% Similarity=0.142 Sum_probs=154.2
Q ss_pred cCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 486 EAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 486 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
....+..++++++|++++|.+..+|.+..+++|++|++++|.++.++ +..+++|++|++++|.+. .+| ++.+++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~-~~~--~~~l~~ 107 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLT-NLD--VTPLTK 107 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS-CCC--CTTCTT
T ss_pred cccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCc-eee--cCCCCc
Confidence 34467788999999999999999988889999999999999998885 789999999999999655 455 899999
Q ss_pred CCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccc--------ccC
Q 038398 566 LEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINV--------LFG 637 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~--------~~~ 637 (720)
|++|++++|.++.+| ++++++|++|++++ +.+..++ ++.+++|+.|++.++... ..++... ..+
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~--~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKI--TKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCC--CCCCCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcc--cccccccCCcCCEEECCC
Confidence 999999999999987 89999999999999 4667775 678999999988876321 1111100 000
Q ss_pred CccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 638 GHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 638 ~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
..-..+ .+..+++|+.|.++.|.+..+ ....+++|+.|++++ +.++.+| +..+++|+.|++++|.
T Consensus 180 n~l~~l-~l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~-N~l~~ip---~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 180 NKITEL-DVSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSS-NKLTEID---VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp SCCCCC-CCTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCS-SCCSCCC---CTTCTTCSEEECCSSC
T ss_pred Ccccee-ccccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcC-CcccccC---ccccCCCCEEEeeCCc
Confidence 000001 156677778888777776654 234456888888887 4466665 6778888888888875
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=1.4e-14 Score=148.99 Aligned_cols=190 Identities=20% Similarity=0.283 Sum_probs=152.1
Q ss_pred cEEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
..+...+.....++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.+.
T Consensus 44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~- 120 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT- 120 (308)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCC-
T ss_pred CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCC-
Confidence 34555566666677888999999999999999988888899999999999999888753 889999999999999654
Q ss_pred cCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhccc
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINV 634 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~ 634 (720)
.+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..++. +..+++|+.|++.++ .+..++
T Consensus 121 ~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n---~l~~~~--- 189 (308)
T 1h6u_A 121 DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDN---KISDIS--- 189 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS---CCCCCG---
T ss_pred Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCC---ccCcCh---
Confidence 5554 8999999999999999999886 899999999999995 6777876 788888888887764 333221
Q ss_pred ccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccc
Q 038398 635 LFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLD 693 (720)
Q Consensus 635 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~ 693 (720)
.+..+++|+.|+++.|.+..+.. ...+++|+.|++++++ +...+
T Consensus 190 ----------~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 190 ----------PLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp ----------GGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEE-EECCC
T ss_pred ----------hhcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCe-eecCC
Confidence 16678889999998888776552 3445688999998844 44444
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=6.2e-15 Score=169.58 Aligned_cols=144 Identities=24% Similarity=0.269 Sum_probs=98.5
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLL 553 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (720)
.+...+.+...+|..- .+++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.+.
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 4444455555555322 2678888888888777654 466778888888888777777777778888888888887544
Q ss_pred ccCCc-cccCCCCCCEEeccCCCCcccc-hhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeecccc
Q 038398 554 WKLPS-GISTLVSLEHLDLSSTAITHLP-IELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDC 622 (720)
Q Consensus 554 ~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~ 622 (720)
.+|. .|+++++|++|++++|.++.+| ..|+++++|++|++++| .+..++...++.+++|++|++.++
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSS
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCC
Confidence 4443 5778888888888888777775 45777888888888774 344444333566777777766553
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=2.2e-14 Score=160.88 Aligned_cols=119 Identities=27% Similarity=0.316 Sum_probs=100.5
Q ss_pred cEEEEcCCCCccCcccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
..+...+.....+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 34 ~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 4556666666666642 2378999999999998886 468899999999999999999888899999999999999965
Q ss_pred CccCCccccCCCCCCEEeccCCCCcccc--hhhhcCCCCCEEeccCC
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITHLP--IELQKLVNLKCLNLEYM 597 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~l~~~ 597 (720)
..+|.. .+++|++|++++|.++.+| ..++++++|++|++++|
T Consensus 113 -~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 113 -QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp -CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred -CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence 478876 8999999999999998764 78999999999999984
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=5.3e-15 Score=149.84 Aligned_cols=196 Identities=17% Similarity=0.212 Sum_probs=147.3
Q ss_pred EEEcCCCCccCc--ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 477 LVHAGLGLTEAP--EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 477 ~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
+...+......+ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 333344443333 57788999999999999988764 57899999999999999999888899999999999999977
Q ss_pred CccCCccccCCCCCCEEeccCCCCcc--cchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceee-ccccCCCcccc
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITH--LPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLR-MFDCGGSKIER 629 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~-~~~~~~~~l~~ 629 (720)
....+..++.+++|++|++++|.++. +|..+.++++|++|++++ +.+..++...+..+++|+.|. ..+++.|.+..
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 66556679999999999999999986 688999999999999999 466777765677888888554 34555666655
Q ss_pred hhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccccc
Q 038398 630 LKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 630 l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
++...+ ...+|+.|++++|.+..++. .....+++|+.|++++++
T Consensus 192 ~~~~~~------------~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 192 IQPGAF------------KEIRLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECTTSS------------CSCCEEEEECCSSCCSCCCT--TTTTTCCSCCEEECCSSC
T ss_pred cCcccc------------CCCcccEEECCCCceeecCH--hHhcccccccEEEccCCc
Confidence 443222 22367778887777654421 122445678888887643
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=1.2e-14 Score=162.77 Aligned_cols=206 Identities=22% Similarity=0.179 Sum_probs=105.5
Q ss_pred EEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCC
Q 038398 478 VHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLP 557 (720)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 557 (720)
...+.....+|. .+++|+.|++++|.+..+|. .+++|++|++++|.++.++. .+++|++|++++|++ ..+|
T Consensus 67 ~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l-~~lp 137 (622)
T 3g06_A 67 VIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQL-TSLP 137 (622)
T ss_dssp EECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCC-SCCC
T ss_pred EecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCC-CcCC
Confidence 333333444443 34556666666665555544 44555555555555555443 334455555555532 2344
Q ss_pred ccccCCCCCCEEeccCCCCcccchhhh-----------------cCCCCCEEeccCCcCCCCCchhhhhccccCceeecc
Q 038398 558 SGISTLVSLEHLDLSSTAITHLPIELQ-----------------KLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMF 620 (720)
Q Consensus 558 ~~i~~l~~L~~L~L~~~~i~~lp~~i~-----------------~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~ 620 (720)
.. +++|++|++++|.++.+|..+. .+++|+.|++++ +.+..+|. .+++|+.|.+.
T Consensus 138 ~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~ 209 (622)
T 3g06_A 138 VL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSD-NQLASLPT----LPSELYKLWAY 209 (622)
T ss_dssp CC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS-SCCSCCCC----CCTTCCEEECC
T ss_pred CC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCC-CCCCCCCC----ccchhhEEECc
Confidence 32 2455555555555554443211 124455555554 23344443 12344444433
Q ss_pred ccCCCcccchhccc-------ccCC-ccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCcc
Q 038398 621 DCGGSKIERLKINV-------LFGG-HQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSL 692 (720)
Q Consensus 621 ~~~~~~l~~l~~~~-------~~~~-~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l 692 (720)
++. +..++... ..+. -..++ ..+++|+.|.+++|.+..++. .+++|+.|+|++ |.++.+
T Consensus 210 ~N~---l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~-N~L~~l 276 (622)
T 3g06_A 210 NNR---LTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM------LPSGLLSLSVYR-NQLTRL 276 (622)
T ss_dssp SSC---CSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCS-SCCCSC
T ss_pred CCc---ccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc------ccccCcEEeCCC-CCCCcC
Confidence 322 22111100 0000 00001 345677788887777664432 446888999988 457777
Q ss_pred ccccccccCCcceeeecCCCCC
Q 038398 693 DIFCLAGLRNLNKLYVAGCKHL 714 (720)
Q Consensus 693 ~~~~l~~l~~L~~L~l~~c~~l 714 (720)
| ..+.++++|+.|+|++|+.-
T Consensus 277 p-~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 277 P-ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp C-GGGGGSCTTCEEECCSCCCC
T ss_pred C-HHHhhccccCEEEecCCCCC
Confidence 7 56888999999999998743
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=9.3e-15 Score=148.97 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=123.8
Q ss_pred cccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
.....+++++.|++++|.+..++.+..+++|++|++++|.++.+++ +.++++|++|++++|.+. .+| .++.+++|+
T Consensus 40 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCC
T ss_pred cchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCCCCC
Confidence 3455677888888888888877777778888888888888877776 778888888888888543 444 478888888
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhc
Q 038398 568 HLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM 647 (720)
Q Consensus 568 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 647 (720)
+|++++|.++.+| .+..+++|++|++++ +.+..++. ++.+++|+.|++.++. +..++ .+.
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~---l~~~~-------------~l~ 175 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQ---ISDIV-------------PLA 175 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSC---CCCCG-------------GGT
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCc---cccch-------------hhc
Confidence 8888888888774 577888888888887 45666654 6778888887776543 32111 156
Q ss_pred CCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccc
Q 038398 648 GMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCF 686 (720)
Q Consensus 648 ~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 686 (720)
.+++|+.|.++.|.+..++. ...+++|+.|+++++
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~----l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCcCCCChh----hccCCCCCEEECcCC
Confidence 67788888888777766532 334457788887764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=3.9e-15 Score=163.25 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=130.2
Q ss_pred ccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
.+..+++|++|++++|.+...+++..+++|++|++++|.++.+++ .++|++|++++|.+.+..+ ..+++|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~---~~l~~L~~ 124 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC---SRGQGKKN 124 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEE---CCCSSCEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCc---cccCCCCE
Confidence 456666777777777776655556666777777777776655442 3667777777775443333 24577888
Q ss_pred EeccCCCCccc-chhhhcCCCCCEEeccCCcCCCCC-chhhhhccccCceeeccccCCCcccchhcccccCCccccHHHh
Q 038398 569 LDLSSTAITHL-PIELQKLVNLKCLNLEYMNNLNQF-PRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEEL 646 (720)
Q Consensus 569 L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 646 (720)
|++++|.++.+ |..++++++|++|++++| .+..+ |....+.+++|+.|++.++ .+..++ ..
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N---~l~~~~-------------~~ 187 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN---FIYDVK-------------GQ 187 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS---CCCEEE-------------CC
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC---cccccc-------------cc
Confidence 88888877766 445777888888888774 44443 3322235677777766653 333221 12
Q ss_pred cCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCC
Q 038398 647 MGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHL 714 (720)
Q Consensus 647 ~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 714 (720)
..+++|+.|++++|.+..++ .....+++|+.|++++ +.+..+| ..+..+++|+.|++++|+..
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRN-NKLVLIE-KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTT-SCCCEEC-TTCCCCTTCCEEECTTCCBC
T ss_pred ccCCCCCEEECCCCCCCCCC---HhHcCCCCccEEEecC-CcCcccc-hhhccCCCCCEEEcCCCCCc
Confidence 35788999999988876543 2344567899999998 5577777 45788899999999998754
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=5e-15 Score=150.99 Aligned_cols=185 Identities=21% Similarity=0.286 Sum_probs=148.7
Q ss_pred EEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCc
Q 038398 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAIT 577 (720)
Q Consensus 498 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~ 577 (720)
.+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|+|++|.+. .+|. ++.+++|++|++++|.++
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCC
Confidence 344555555555455678899999999999988864 889999999999999655 4554 999999999999999999
Q ss_pred ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEE
Q 038398 578 HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTI 657 (720)
Q Consensus 578 ~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~ 657 (720)
.+|. +..+++|++|++++| .+..++. +..+++|+.|++.++ .+..+ ..+..+++|+.|.+
T Consensus 104 ~~~~-l~~l~~L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n---~l~~~-------------~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 104 DLSS-LKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNN---KITDI-------------TVLSRLTKLDTLSL 163 (291)
T ss_dssp CGGG-GTTCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS---CCCCC-------------GGGGGCTTCSEEEC
T ss_pred CChh-hccCCCCCEEECCCC-cCCCChh--hcCCCCCCEEEccCC---cCCcc-------------hhhccCCCCCEEEc
Confidence 9875 999999999999994 6777765 788999999988764 33321 34778899999999
Q ss_pred EecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 658 TLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 658 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
+.|.+..+.. ...+++|+.|++++ +.++.++ .+.++++|+.|++++|+.
T Consensus 164 ~~N~l~~~~~----l~~l~~L~~L~L~~-N~i~~l~--~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 164 EDNQISDIVP----LAGLTKLQNLYLSK-NHISDLR--ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CSSCCCCCGG----GTTCTTCCEEECCS-SCCCBCG--GGTTCTTCSEEEEEEEEE
T ss_pred cCCccccchh----hcCCCccCEEECCC-CcCCCCh--hhccCCCCCEEECcCCcc
Confidence 9998876543 44557999999998 5677776 589999999999999863
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=5.2e-15 Score=152.60 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=147.5
Q ss_pred ccceeEEEecccccccCC-C-C--CCCCcccEEEccCCCCcCcch----HHhccCCcccEEEccCCCCCccCCccccCCC
Q 038398 493 WRNVRRMSLMKNKIENLS-E-T--PTCPHLLSLFLSDNSLKMSTD----DFFQSMPSLRVFNMSNNHLLWKLPSGISTLV 564 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~~~~-~-~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 564 (720)
++++++|++++|.+.... . + ..+++|++|++++|.+....+ ..+..+++|++|+|++|.+.+..|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 356999999999887543 2 2 678999999999998876322 3356799999999999988777778899999
Q ss_pred CCCEEeccCCCCcc---cchh--hhcCCCCCEEeccCCcCCCCCchh---hhhccccCceeeccccCCCcccchhccccc
Q 038398 565 SLEHLDLSSTAITH---LPIE--LQKLVNLKCLNLEYMNNLNQFPRL---VISAFSKLQVLRMFDCGGSKIERLKINVLF 636 (720)
Q Consensus 565 ~L~~L~L~~~~i~~---lp~~--i~~l~~L~~L~l~~~~~l~~lp~~---~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~ 636 (720)
+|++|+|++|++.. +|.. +.++++|++|++++| .++.+|.. .++.+++|++|++.+ |.+..+....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~---N~l~~~~p~~-- 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH---NSLRATVNPS-- 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT---SCCCCCCCSC--
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC---CCCCccchhh--
Confidence 99999999998764 4333 468999999999994 56666653 245667777777765 5444321100
Q ss_pred CCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 637 GGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 637 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
...+..+++|+.|.++.|.+..++ ... +++|+.|++++ |.++.++ .+..+++|+.|+|++|+-
T Consensus 244 ------~~~~~~~~~L~~L~Ls~N~l~~lp---~~~--~~~L~~L~Ls~-N~l~~~~--~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 244 ------APRCMWSSALNSLNLSFAGLEQVP---KGL--PAKLRVLDLSS-NRLNRAP--QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ------CSSCCCCTTCCCEECCSSCCCSCC---SCC--CSCCSCEECCS-CCCCSCC--CTTSCCCCSCEECSSTTT
T ss_pred ------HHhccCcCcCCEEECCCCCCCchh---hhh--cCCCCEEECCC-CcCCCCc--hhhhCCCccEEECcCCCC
Confidence 111223478999999998887543 222 36999999998 5677776 368899999999999974
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=162.27 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=50.4
Q ss_pred cccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
+..+++|++|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|++++|.+....+..++++++|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 3444445555555554444322 24445555555555544444444445555555555555533222222345555555
Q ss_pred EEeccCCCCcc--cchhhhcCCCCCEEeccC
Q 038398 568 HLDLSSTAITH--LPIELQKLVNLKCLNLEY 596 (720)
Q Consensus 568 ~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~ 596 (720)
+|++++|.++. +|..++++++|++|++++
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 55555554443 344455555555555554
No 76
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=3.9e-15 Score=154.04 Aligned_cols=208 Identities=16% Similarity=0.133 Sum_probs=138.3
Q ss_pred EEEcCCCCccCc--ccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAP--EIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+...+......+ .+..+++|+.|++++|.+...+.+..+++|++|++++|.++.++ .+++|++|++++|.+.+
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~ 113 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR 113 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCC
Confidence 344444443332 45666777777777777765555666777777777777665544 23677777777775443
Q ss_pred cCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhh-hccccCceeeccccCCCcccchhc
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVI-SAFSKLQVLRMFDCGGSKIERLKI 632 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~-~~l~~L~~L~~~~~~~~~l~~l~~ 632 (720)
..+ ..+++|++|++++|.++.++. .+..+++|++|++++| .+..++...+ ..+++|++|++.++ .+..++
T Consensus 114 ~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N---~l~~~~- 185 (317)
T 3o53_A 114 VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN---FIYDVK- 185 (317)
T ss_dssp EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS---CCCEEE-
T ss_pred cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC---cCcccc-
Confidence 322 235778888888888887754 5777888888888874 4555443223 45677777776653 333221
Q ss_pred ccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 633 NVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 633 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
....+++|+.|+++.|.+..++ .....+++|+.|++++ +.++.++ ..+..+++|+.|++++|+
T Consensus 186 ------------~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~L~~-N~l~~l~-~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 186 ------------GQVVFAKLKTLDLSSNKLAFMG---PEFQSAAGVTWISLRN-NKLVLIE-KALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ------------CCCCCTTCCEEECCSSCCCEEC---GGGGGGTTCSEEECTT-SCCCEEC-TTCCCCTTCCEEECTTCC
T ss_pred ------------cccccccCCEEECCCCcCCcch---hhhcccCcccEEECcC-Ccccchh-hHhhcCCCCCEEEccCCC
Confidence 1224788999999988876543 2345567999999998 5677777 568889999999999998
Q ss_pred CC
Q 038398 713 HL 714 (720)
Q Consensus 713 ~l 714 (720)
..
T Consensus 249 ~~ 250 (317)
T 3o53_A 249 FH 250 (317)
T ss_dssp CB
T ss_pred cc
Confidence 54
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=1.9e-14 Score=161.15 Aligned_cols=212 Identities=23% Similarity=0.199 Sum_probs=143.0
Q ss_pred cEEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
..+...+.....+|.... ++|+.|++++|.+..+|. .+++|++|++++|.++.++. .+++|++|+|++|+ +.
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~-l~ 114 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNP-LT 114 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCC-CC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCc-CC
Confidence 455566666666665322 799999999999998877 67999999999999988876 68999999999995 44
Q ss_pred cCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhcc-----------------ccCcee
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAF-----------------SKLQVL 617 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l-----------------~~L~~L 617 (720)
.+|. .+.+|++|++++|+++.+|.. +++|++|++++| .+..+|.. +..+ ++|+.|
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L 186 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQEL 186 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEE
Confidence 6776 678999999999999999974 589999999985 66777652 3333 333333
Q ss_pred eccccCCCcccchhcccccCCc-----cccHHHh-cCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCc
Q 038398 618 RMFDCGGSKIERLKINVLFGGH-----QFLVEEL-MGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKS 691 (720)
Q Consensus 618 ~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~l-~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 691 (720)
++ +.|.+..++... ..+. ...+..+ ..+++|+.|.+++|.+..++ ..+++|+.|++++ |.++.
T Consensus 187 ~L---s~N~l~~l~~~~-~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~-N~L~~ 255 (622)
T 3g06_A 187 SV---SDNQLASLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP------VLPSELKELMVSG-NRLTS 255 (622)
T ss_dssp EC---CSSCCSCCCCCC-TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCS-SCCSC
T ss_pred EC---CCCCCCCCCCcc-chhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC------CCCCcCcEEECCC-CCCCc
Confidence 33 334443333110 0000 0000001 12356777777777665533 2346788888887 45667
Q ss_pred cccccccccCCcceeeecCCCCCcccc
Q 038398 692 LDIFCLAGLRNLNKLYVAGCKHLEDSQ 718 (720)
Q Consensus 692 l~~~~l~~l~~L~~L~l~~c~~l~~i~ 718 (720)
+|. .+++|+.|+|++|. ++.++
T Consensus 256 lp~----~~~~L~~L~Ls~N~-L~~lp 277 (622)
T 3g06_A 256 LPM----LPSGLLSLSVYRNQ-LTRLP 277 (622)
T ss_dssp CCC----CCTTCCEEECCSSC-CCSCC
T ss_pred CCc----ccccCcEEeCCCCC-CCcCC
Confidence 762 56788888888874 44443
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=4.3e-14 Score=140.89 Aligned_cols=172 Identities=20% Similarity=0.280 Sum_probs=139.7
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLL 553 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (720)
.+...+.....+|... .++++.|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|+|++|.+.
T Consensus 18 ~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp EEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred EEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 3455555566665422 3689999999999988764 578999999999999999999888999999999999999777
Q ss_pred ccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhc
Q 038398 554 WKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKI 632 (720)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~ 632 (720)
...|..+..+++|++|+|++|.++.+|.. +.++++|++|++++ +.+..+|...++.+++|+.|++.+ |.+..++
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~- 171 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST---NQLQSVP- 171 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS---SCCSCCC-
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC---CcCCccC-
Confidence 66667789999999999999999999876 68899999999999 578888876678888888888775 4443332
Q ss_pred ccccCCccccHHHhcCCCCCceeEEEecchh
Q 038398 633 NVLFGGHQFLVEELMGMKHLMVLTITLKSWQ 663 (720)
Q Consensus 633 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~ 663 (720)
...+..+++|+.|.+++|.+.
T Consensus 172 ----------~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 ----------HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----------TTTTTTCTTCCEEECCSCCBC
T ss_pred ----------HHHHhCCCCCCEEEeeCCcee
Confidence 223567889999999988763
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=5.4e-15 Score=162.10 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=150.8
Q ss_pred cccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEE
Q 038398 492 NWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (720)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++..++ |..+++|++|+|++|.+. .+| ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcCEE
Confidence 4558999999999998875 35889999999999999987776 899999999999999543 444 33899999
Q ss_pred eccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhc-C
Q 038398 570 DLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM-G 648 (720)
Q Consensus 570 ~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~-~ 648 (720)
++++|.++.+|.. .+++|+.|++++| .+..+++..++.+++|+.|++.+ |.+..+ .+..+. .
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~-----------~~~~l~~~ 167 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL---NEIDTV-----------NFAELAAS 167 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTT---SCCCEE-----------EGGGGGGG
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCC---CCCCCc-----------ChHHHhhh
Confidence 9999999988753 5799999999994 56666654577788888887765 444322 222333 6
Q ss_pred CCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 649 MKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 649 l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
+++|+.|++++|.+..++. ...+++|+.|+|++ +.++.++ ..+..+++|+.|+|++|.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~-N~l~~~~-~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSS-NKLAFMG-PEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCS-SCCCEEC-GGGGGGTTCSEEECTTSC
T ss_pred CCcccEEecCCCccccccc----cccCCCCCEEECCC-CCCCCCC-HhHcCCCCccEEEecCCc
Confidence 7899999999998876522 22367999999998 5677777 358899999999999986
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.3e-14 Score=162.28 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=142.8
Q ss_pred cCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCC
Q 038398 486 EAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVS 565 (720)
Q Consensus 486 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 565 (720)
+......+++|+.|++++|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++|.+. .+| .++.+++
T Consensus 35 ~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~ 110 (605)
T 1m9s_A 35 DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKK 110 (605)
T ss_dssp SEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTT
T ss_pred cccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCC
Confidence 344566778899999999999988888889999999999999988877 889999999999999554 455 7889999
Q ss_pred CCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHH
Q 038398 566 LEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEE 645 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 645 (720)
|++|+|++|.++.+| .+..+++|+.|+|++| .+..++. ++.+++|+.|++.++. +..+ .+
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~---l~~~-----------~~-- 170 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQ---ISDI-----------VP-- 170 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSC---CCCC-----------GG--
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCc---CCCc-----------hh--
Confidence 999999999999875 5889999999999984 6677754 7888888888887643 3211 11
Q ss_pred hcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCcccccccc
Q 038398 646 LMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLA 698 (720)
Q Consensus 646 l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~ 698 (720)
+..+++|+.|.++.|.+..++ ....+++|+.|+|++|+ +...|...+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~L~~N~-l~~~p~~~~~ 218 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQE-CLNKPINHQS 218 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEECCSEE-EECCCCCCCS
T ss_pred hccCCCCCEEECcCCCCCCCh----HHccCCCCCEEEccCCc-CcCCcccccc
Confidence 677889999999988887653 23445689999998754 4444433333
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=4.5e-15 Score=153.57 Aligned_cols=188 Identities=21% Similarity=0.222 Sum_probs=91.5
Q ss_pred cceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 494 RNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
+++++|++++|.+..++. +..+++|++|++++|.++..++ +..+++|++|+|++|.+. .+| .+++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc----CCCCcCEEEC
Confidence 455566666665555431 3455556666666665554443 555566666666655322 222 2255666666
Q ss_pred cCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHh-cCCC
Q 038398 572 SSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEEL-MGMK 650 (720)
Q Consensus 572 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l-~~l~ 650 (720)
++|.++.+|.. .+++|++|++++ +.+..++...++.+++|+.|++.+ |.+..++ +..+ ..++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~---N~l~~~~-----------~~~~~~~l~ 169 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKL---NEIDTVN-----------FAELAASSD 169 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTT---SCCCEEE-----------GGGGGGGTT
T ss_pred CCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCC---CCCCccc-----------HHHHhhccC
Confidence 66655555432 245566666655 344444433344455555544443 2222111 1111 2345
Q ss_pred CCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCC
Q 038398 651 HLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGC 711 (720)
Q Consensus 651 ~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 711 (720)
+|+.|.++.|.+..++. ...+++|+.|++++ +.++.++ ..+..+++|+.|++++|
T Consensus 170 ~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~-N~l~~l~-~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSS-NKLAFMG-PEFQSAAGVTWISLRNN 224 (317)
T ss_dssp TCCEEECTTSCCCEEEC----CCCCTTCCEEECCS-SCCCEEC-GGGGGGTTCSEEECTTS
T ss_pred cCCEEECCCCcCccccc----ccccccCCEEECCC-CcCCcch-hhhcccCcccEEECcCC
Confidence 55555555555443311 11234556666655 3344444 22555556666666555
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.55 E-value=3e-14 Score=158.38 Aligned_cols=122 Identities=21% Similarity=0.221 Sum_probs=106.9
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
++|++++|.+..+|.... ++|++|++++|.+..+++..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 579999999998886433 8999999999999999988899999999999999987777789999999999999999999
Q ss_pred cccchhhhcCCCCCEEeccCCcCCCC--CchhhhhccccCceeeccccC
Q 038398 577 THLPIELQKLVNLKCLNLEYMNNLNQ--FPRLVISAFSKLQVLRMFDCG 623 (720)
Q Consensus 577 ~~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~~~~~~ 623 (720)
+.+|.. .+++|++|++++| .+.. +|.. ++.+++|++|++.++.
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESS
T ss_pred eecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcc
Confidence 999987 8999999999995 5554 4553 8899999999887643
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=3.1e-15 Score=167.39 Aligned_cols=190 Identities=20% Similarity=0.268 Sum_probs=152.7
Q ss_pred cceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccC
Q 038398 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSS 573 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (720)
.++..+.+..+.+..+.....+++|+.|++++|.+..++. +..|++|+.|+|++|.+. .+|. ++.+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcC
Confidence 3444555666666665556678899999999999988864 899999999999999655 4554 89999999999999
Q ss_pred CCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCc
Q 038398 574 TAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLM 653 (720)
Q Consensus 574 ~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~ 653 (720)
|.++.+| .+..+++|++|+|++| .+..+|. +..+++|+.|++.++. +..+ ..+..+++|+
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~---l~~l-------------~~l~~l~~L~ 156 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNK---ITDI-------------TVLSRLTKLD 156 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSC---CCCC-------------GGGGSCTTCS
T ss_pred CCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCc---cCCc-------------hhhcccCCCC
Confidence 9999987 6999999999999994 6777775 7889999999887653 3221 3477899999
Q ss_pred eeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCC
Q 038398 654 VLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHL 714 (720)
Q Consensus 654 ~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l 714 (720)
.|.++.|.+..+.. ...+++|+.|+|++| .+..++ .+..+++|+.|+|++|+..
T Consensus 157 ~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~i~~l~--~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 157 TLSLEDNQISDIVP----LAGLTKLQNLYLSKN-HISDLR--ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCBCG--GGTTCTTCSEEECCSEEEE
T ss_pred EEECcCCcCCCchh----hccCCCCCEEECcCC-CCCCCh--HHccCCCCCEEEccCCcCc
Confidence 99999998876543 445579999999984 567765 7899999999999998743
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=3e-14 Score=163.85 Aligned_cols=197 Identities=18% Similarity=0.177 Sum_probs=151.0
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
+.++.+++.+..+|... .+++++|++++|.++.+++..|.++++|++|+|++|.+.+..|..++++++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 46788888888887632 27999999999999999988899999999999999988777788999999999999999999
Q ss_pred cccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCcee
Q 038398 577 THLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVL 655 (720)
Q Consensus 577 ~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L 655 (720)
+.+|. .|+++++|++|++++| .+..+|...++.+++|++|++.++. +..++ +..+..+++|+.|
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~-----------~~~~~~l~~L~~L 150 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG---LSSTK-----------LGTQVQLENLQEL 150 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSC---CSCCC-----------CCSSSCCTTCCEE
T ss_pred CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCc---ccccC-----------chhhcccccCCEE
Confidence 99987 4999999999999995 6678876568889999999887653 32211 2235678899999
Q ss_pred EEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecC
Q 038398 656 TITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAG 710 (720)
Q Consensus 656 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~ 710 (720)
.++.|.+..+..-.......++|+.|+++++ .+..++...+..+++|+.|++.+
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccc
Confidence 9998876554322222223368999999984 45555545565555544444433
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=3.2e-14 Score=159.57 Aligned_cols=126 Identities=18% Similarity=0.200 Sum_probs=107.8
Q ss_pred ccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEecc
Q 038398 493 WRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (720)
+...+++++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..|+++++|++|+++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 344589999999999888632 3899999999999999998889999999999999998777778899999999999999
Q ss_pred CCCCcccchhhhcCCCCCEEeccCCcCCCCCch-hhhhccccCceeecccc
Q 038398 573 STAITHLPIELQKLVNLKCLNLEYMNNLNQFPR-LVISAFSKLQVLRMFDC 622 (720)
Q Consensus 573 ~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~ 622 (720)
+|.++.+|.. .+++|++|++++| .+..+|. ..++.+++|++|++.++
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC
Confidence 9999999987 8999999999994 5666652 34888999999988764
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=160.96 Aligned_cols=207 Identities=21% Similarity=0.234 Sum_probs=146.3
Q ss_pred ccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcc--hHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 491 QNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMST--DDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
..+++++.|++.+|.+........+++|+.|++++|.+.... +..+.++++|++|++++|.+. .+|..+..+++|++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 400 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCE
Confidence 355667777777776655444467788888888888776653 445778888888888888544 45555888888888
Q ss_pred EeccCCCCcccch--hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHh
Q 038398 569 LDLSSTAITHLPI--ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEEL 646 (720)
Q Consensus 569 L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 646 (720)
|++++|.++..+. .+.++++|++|++++|. +...+...+..+++|+.|++.++. +.. ...+..+
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---l~~----------~~~p~~~ 466 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS---FQE----------NFLPDIF 466 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE---EGG----------GEECSCC
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCc---Ccc----------ccchhhh
Confidence 8888888776643 57788888888888854 333333346777888887776543 220 1123346
Q ss_pred cCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCCCc
Q 038398 647 MGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLE 715 (720)
Q Consensus 647 ~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~ 715 (720)
..+++|+.|+++.|.+..+. +.....+++|+.|++++| .++.++...+.++++|+.|++++|+---
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcccCCCEEECCCCccccCC--hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 77899999999988776431 233445679999999984 5777776778999999999999987543
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.52 E-value=3.2e-14 Score=159.25 Aligned_cols=197 Identities=20% Similarity=0.168 Sum_probs=154.7
Q ss_pred EEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCc
Q 038398 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAIT 577 (720)
Q Consensus 498 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~ 577 (720)
..+.+++.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.++
T Consensus 9 ~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred eEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 3567778888887642 379999999999999988777999999999999999887777789999999999999999999
Q ss_pred ccchh-hhcCCCCCEEeccCCcCCCCC--chhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCce
Q 038398 578 HLPIE-LQKLVNLKCLNLEYMNNLNQF--PRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMV 654 (720)
Q Consensus 578 ~lp~~-i~~l~~L~~L~l~~~~~l~~l--p~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~ 654 (720)
.+|.. ++++++|++|++++| .+..+ |. .++.+++|++|++.++.. +..+ ....+..+++|+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~l~~L~~L~L~~n~~--~~~~-----------~~~~~~~l~~L~~ 152 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGN-PYQTLGVTS-LFPNLTNLQTLRIGNVET--FSEI-----------RRIDFAGLTSLNE 152 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSS--CCEE-----------CTTTTTTCCEEEE
T ss_pred ccCHHHhccCCCCcEEECCCC-cccccchhh-hhhccCCccEEECCCCcc--cccc-----------CHhhhhcccccCe
Confidence 98876 999999999999995 55543 44 378899999999887541 1111 1234677899999
Q ss_pred eEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 655 LTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 655 L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
|.++.+.+... .+.....+++|+.|+++.+ ....++...+..+++|+.|++++|..
T Consensus 153 L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 153 LEIKALSLRNY--QSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEEETTCCEE--CTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred eeccCCccccc--ChhhhhccccCceEecccC-cccccchhhHhhcccccEEEccCCcc
Confidence 99999887542 2234455678999999974 45566644456789999999988763
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.3e-13 Score=135.17 Aligned_cols=127 Identities=26% Similarity=0.380 Sum_probs=79.5
Q ss_pred cceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 494 RNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
++++.|++++|.+..++. +..+++|+.|++++|.+..+++..|.++++|++|+|++|.+....+..+..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 566666776666665532 355666667777766666666665666666777777666544333444566666777777
Q ss_pred cCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 572 SSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 572 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
++|.++.+|..+.++++|++|++++ +.+..+|...+..+++|+.|++.+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 6666666666666666677777666 455566654455566666555543
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1e-14 Score=152.27 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=133.7
Q ss_pred eeEEEecccccccCCCCCCC--CcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc-CCccccCCCCCCEEecc
Q 038398 496 VRRMSLMKNKIENLSETPTC--PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK-LPSGISTLVSLEHLDLS 572 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l~~L~~L~L~ 572 (720)
+++++++++.+.. .....+ ++++.|++++|.+...++. +..+++|++|+|++|.+... +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 5678888876642 112333 7899999999988887766 56799999999999976655 78889999999999999
Q ss_pred CCCCc-ccchhhhcCCCCCEEeccCCcCCCC--CchhhhhccccCceeecccc-CCCcccchhcccccCCccccHHHhcC
Q 038398 573 STAIT-HLPIELQKLVNLKCLNLEYMNNLNQ--FPRLVISAFSKLQVLRMFDC-GGSKIERLKINVLFGGHQFLVEELMG 648 (720)
Q Consensus 573 ~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~l~~L~~L~~~~~-~~~~l~~l~~~~~~~~~~~~~~~l~~ 648 (720)
+|.++ ..|..+..+++|++|++++|..+.. +|. .+..+++|++|++.+| .... ......+..
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~-------------~~~~~~~~~ 192 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTE-------------KHVQVAVAH 192 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCH-------------HHHHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcCh-------------HHHHHHHHh
Confidence 99987 5678899999999999999855553 554 3788999999999887 3221 112233444
Q ss_pred CC-CCceeEEEecch-hhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 649 MK-HLMVLTITLKSW-QALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 649 l~-~L~~L~~~~~~~-~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
++ +|+.|.++++.. -....++.....+++|+.|++++|..++......+.++++|+.|+|++|.
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 55 566666655531 01122222233344555555555443333333345555555555555554
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=1.8e-15 Score=156.12 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=130.7
Q ss_pred eeEEEecccccccC--CCC-C-------CCCcccEEEccCCCCcCc-chHHh-ccCCcccEEEccCCCCCccCCccccCC
Q 038398 496 VRRMSLMKNKIENL--SET-P-------TCPHLLSLFLSDNSLKMS-TDDFF-QSMPSLRVFNMSNNHLLWKLPSGISTL 563 (720)
Q Consensus 496 l~~L~l~~~~~~~~--~~~-~-------~~~~L~~L~l~~~~~~~~-~~~~~-~~l~~L~~L~L~~~~~~~~lp~~i~~l 563 (720)
++.|++++|.+... +.. . .+++|++|++++|.+++. +..+| ..+++|++|+|++|.+.+. |..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 67777777776432 221 1 578888888888888754 33322 7888888888888866544 7777776
Q ss_pred -----CCCCEEeccCCCCcccc-hhhhcCCCCCEEeccCCcCCCC--Cchh-hhhccccCceeeccccCCCcccchhccc
Q 038398 564 -----VSLEHLDLSSTAITHLP-IELQKLVNLKCLNLEYMNNLNQ--FPRL-VISAFSKLQVLRMFDCGGSKIERLKINV 634 (720)
Q Consensus 564 -----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~--lp~~-~~~~l~~L~~L~~~~~~~~~l~~l~~~~ 634 (720)
++|++|++++|.++.+| ..++++++|++|++++|..... +|.. .++.+++|++|++.++ .+..++
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N---~l~~~~--- 217 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA---GMETPS--- 217 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS---CCCCHH---
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC---cCcchH---
Confidence 88888888888888776 5688888888888888532221 1222 1266777777776654 333211
Q ss_pred ccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 635 LFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 635 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
......+..+++|+.|+++.|.+...... .....+++|+.|++++ +.++.+| ..+. ++|+.|+|++|.
T Consensus 218 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~Ls~-N~l~~ip-~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 218 -----GVCSALAAARVQLQGLDLSHNSLRDAAGA-PSCDWPSQLNSLNLSF-TGLKQVP-KGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp -----HHHHHHHHTTCCCSEEECTTSCCCSSCCC-SCCCCCTTCCEEECTT-SCCSSCC-SSCC--SEEEEEECCSSC
T ss_pred -----HHHHHHHhcCCCCCEEECCCCcCCcccch-hhhhhcCCCCEEECCC-CccChhh-hhcc--CCceEEECCCCC
Confidence 11122345678888888888876653211 1222346888888887 4566776 2333 788888888875
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=9.1e-14 Score=132.91 Aligned_cols=143 Identities=21% Similarity=0.332 Sum_probs=124.5
Q ss_pred cEEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 475 NFLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
..+...+.....++.+..+++|+.|++++|.+..++.+..+++|++|++++|.++...+..+.++++|++|++++|.+.+
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 34555566666777889999999999999999888888899999999999999987555558999999999999998877
Q ss_pred cCCccccCCCCCCEEeccCCC-CcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 555 KLPSGISTLVSLEHLDLSSTA-ITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
..|..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|+.|++.+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECB
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeC
Confidence 788899999999999999997 99998 6999999999999994 6777874 78899999998875
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.1e-13 Score=140.81 Aligned_cols=157 Identities=23% Similarity=0.312 Sum_probs=111.2
Q ss_pred ccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCE
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEH 568 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 568 (720)
.+..+++|+.|++++|.+..++....+++|++|++++|.++.++.. +.++++|++|+|++|++....|..|.++++|++
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 4566777888888888777776667777888888888877776654 677788888888888655444566778888888
Q ss_pred EeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhc
Q 038398 569 LDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM 647 (720)
Q Consensus 569 L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 647 (720)
|+|++|.++.+|.. +..+++|+.|++++ +.+..+|...+..+++|+.|++.+ |.+..++. .+.
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~---N~l~~ip~------------~~~ 192 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE---NSLYTIPK------------GFF 192 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS---SCCCCCCT------------TTT
T ss_pred EECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC---CcCCccCh------------hhc
Confidence 88888888877655 56778888888877 466777776566677777776654 44443332 233
Q ss_pred CCCCCceeEEEecch
Q 038398 648 GMKHLMVLTITLKSW 662 (720)
Q Consensus 648 ~l~~L~~L~~~~~~~ 662 (720)
.+..|+.+.+.+|.+
T Consensus 193 ~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCCSEEECCSCCB
T ss_pred ccccCCeEEeCCCCc
Confidence 455788888877654
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=162.52 Aligned_cols=198 Identities=18% Similarity=0.145 Sum_probs=150.2
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC-CccccCCCCCCEEeccCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL-PSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 575 (720)
+..+.+++.+..+|. -.++|++|++++|.++.+.+..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 457788888998987 5689999999999999988777999999999999999777666 7889999999999999999
Q ss_pred Cccc-chhhhcCCCCCEEeccCCcCCCCCch-hhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCc
Q 038398 576 ITHL-PIELQKLVNLKCLNLEYMNNLNQFPR-LVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLM 653 (720)
Q Consensus 576 i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~ 653 (720)
++.+ |..|.++++|++|++++|.....+|. ..++.+++|++|++.++. +..+. ....++++++|+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~---l~~~~----------~~~~~~~L~~L~ 151 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ---IRSLY----------LHPSFGKLNSLK 151 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC---CCCCC----------CCGGGGTCSSCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc---ccccc----------cchhHhhCCCCC
Confidence 9977 77899999999999999643333443 236788888888887643 32211 123578899999
Q ss_pred eeEEEecchhhHHHHhhhhhhh--hhccccccccccCCCccccccccccCC------cceeeecCCC
Q 038398 654 VLTITLKSWQALKELLISQELQ--RSTQSLFLRCFNDSKSLDIFCLAGLRN------LNKLYVAGCK 712 (720)
Q Consensus 654 ~L~~~~~~~~~l~~l~~~~~~~--~~L~~L~l~~~~~l~~l~~~~l~~l~~------L~~L~l~~c~ 712 (720)
.|+++.|.+..... .....+ ++|+.|++++++.....+ ..+..+++ |+.|++++|.
T Consensus 152 ~L~Ls~N~i~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 152 SIDFSSNQIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp EEEEESSCCCCCCS--GGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred EEECCCCcCCeeCH--HHcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCc
Confidence 99999887644311 111111 589999999865433333 34444444 9999999884
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.8e-13 Score=132.18 Aligned_cols=125 Identities=26% Similarity=0.378 Sum_probs=57.8
Q ss_pred ceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEecc
Q 038398 495 NVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLS 572 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~ 572 (720)
++++|++++|.+..++. +..+++|++|++++|.++.+++..|..+++|++|+|++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555444433 2344555555555555544444444455555555555553332222334445555555555
Q ss_pred CCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeecc
Q 038398 573 STAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMF 620 (720)
Q Consensus 573 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~ 620 (720)
+|.++.+|.. +.++++|++|++++ +.+..+|...+..+++|+.|++.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEec
Confidence 5555544433 34455555555544 23344444333444444444433
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=145.76 Aligned_cols=176 Identities=21% Similarity=0.249 Sum_probs=108.7
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhc-cCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQ-SMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
+.++++++.+..+|.. -.+.++.|++++|.++.+++..|. ++++|++|+|++|.+....|..|.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4677777777766642 234577788888877777776666 77788888888876655555667778888888888887
Q ss_pred Ccccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCce
Q 038398 576 ITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMV 654 (720)
Q Consensus 576 i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~ 654 (720)
++.+|. .|.++++|+.|+|++ +.+..++...+..+++|+.|++.+ |.+..++...+. .+..+++|+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~---N~l~~l~~~~~~--------~~~~l~~L~~ 167 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ---NQISRFPVELIK--------DGNKLPKLML 167 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS---SCCCSCCGGGTC------------CTTCCE
T ss_pred CCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCC---CcCCeeCHHHhc--------CcccCCcCCE
Confidence 777765 377778888888877 455666544466677766666554 444443332211 1245666777
Q ss_pred eEEEecchhhHHHHhhhhhhhh--hcccccccccc
Q 038398 655 LTITLKSWQALKELLISQELQR--STQSLFLRCFN 687 (720)
Q Consensus 655 L~~~~~~~~~l~~l~~~~~~~~--~L~~L~l~~~~ 687 (720)
|+++.|.+..++.- ....++ .++.|+|.+++
T Consensus 168 L~L~~N~l~~l~~~--~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 168 LDLSSNKLKKLPLT--DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EECCSSCCCCCCHH--HHHHSCHHHHTTEECCSSC
T ss_pred EECCCCCCCccCHH--HhhhccHhhcceEEecCCC
Confidence 77776665543311 111111 24667777643
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=3.7e-14 Score=151.15 Aligned_cols=213 Identities=16% Similarity=0.142 Sum_probs=132.8
Q ss_pred cccccceeEEEecccccccCCC------------CCCCCcccEEEccCCCCcC----cchHHhccCCcccEEEccCCCCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLSE------------TPTCPHLLSLFLSDNSLKM----STDDFFQSMPSLRVFNMSNNHLL 553 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~------------~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~ 553 (720)
+..+++|++|++++|.+..+.. +..+++|++|++++|.+.. ..+..+..+++|++|+|++|.+.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 4456677888887765543221 1466788888888887766 23344677788888888887554
Q ss_pred cc----CCccccCC---------CCCCEEeccCCCCc--ccc---hhhhcCCCCCEEeccCCcCCCC-----Cchhhhhc
Q 038398 554 WK----LPSGISTL---------VSLEHLDLSSTAIT--HLP---IELQKLVNLKCLNLEYMNNLNQ-----FPRLVISA 610 (720)
Q Consensus 554 ~~----lp~~i~~l---------~~L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~l~~~~~l~~-----lp~~~~~~ 610 (720)
.. ++..+..+ ++|++|++++|.++ .+| ..+..+++|++|++++| .+.. +....+..
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhc
Confidence 32 23333333 78888888888775 444 45667778888888774 3331 11112456
Q ss_pred cccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHH--Hhhhhhh--hhhccccccccc
Q 038398 611 FSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKE--LLISQEL--QRSTQSLFLRCF 686 (720)
Q Consensus 611 l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~--l~~~~~~--~~~L~~L~l~~~ 686 (720)
+++|+.|++.++ .+.... ...++..+..+++|+.|.++.|.+..... ++..... +++|+.|+|++|
T Consensus 215 ~~~L~~L~Ls~n---~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 215 CQELKVLDLQDN---TFTHLG-------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp CTTCCEEECCSS---CCHHHH-------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred CCCccEEECcCC---CCCcHH-------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 666777766543 332100 12234567788899999999888765422 3333322 578999999985
Q ss_pred cCCCc-----cccccccccCCcceeeecCCCCC
Q 038398 687 NDSKS-----LDIFCLAGLRNLNKLYVAGCKHL 714 (720)
Q Consensus 687 ~~l~~-----l~~~~l~~l~~L~~L~l~~c~~l 714 (720)
. ++. ++.....++++|+.|++++|+.-
T Consensus 285 ~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 285 E-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp C-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred c-CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 4 554 55222366899999999998744
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=9.7e-14 Score=145.60 Aligned_cols=221 Identities=20% Similarity=0.216 Sum_probs=144.6
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCc-CcchHHhccCCcccE-EEccCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLK-MSTDDFFQSMPSLRV-FNMSNNH 551 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~-L~L~~~~ 551 (720)
.+...+.+..++|.-- .+++++|++++|.++.++. +.++++|++|++++|.+. .+++..|.++++|.. +.+++|+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3455556666666421 3578888999888888765 477888999999888764 456666788887765 5556665
Q ss_pred CCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccc-cCceeeccccCCCcccc
Q 038398 552 LLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFS-KLQVLRMFDCGGSKIER 629 (720)
Q Consensus 552 ~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~-~L~~L~~~~~~~~~l~~ 629 (720)
+....|..+..+++|++|++++|.++.+|.. +....++..|++.+++.+..+|...+..+. .++.|.+ +.|.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L---~~N~i~~ 168 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL---NKNGIQE 168 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC---CSSCCCE
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc---ccccccC
Confidence 5555577788888999999988888877653 445667788888777777777765444443 3455544 4566665
Q ss_pred hhcccccCCccccHHHhcCCCCCceeEEEe-cchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeee
Q 038398 630 LKINVLFGGHQFLVEELMGMKHLMVLTITL-KSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYV 708 (720)
Q Consensus 630 l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~-~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l 708 (720)
++...+ ...+|+.+.+.. +.+..++. ..+..+++|+.|++++ +.++.+|... +.+|+.|.+
T Consensus 169 i~~~~f------------~~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~-N~l~~lp~~~---~~~L~~L~~ 230 (350)
T 4ay9_X 169 IHNSAF------------NGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDISR-TRIHSLPSYG---LENLKKLRA 230 (350)
T ss_dssp ECTTSS------------TTEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTT-SCCCCCCSSS---CTTCCEEEC
T ss_pred CChhhc------------cccchhHHhhccCCcccCCCH--HHhccCcccchhhcCC-CCcCccChhh---hccchHhhh
Confidence 554332 234556666542 33333321 2345567899999987 5678887433 455666666
Q ss_pred cCCCCCcccc
Q 038398 709 AGCKHLEDSQ 718 (720)
Q Consensus 709 ~~c~~l~~i~ 718 (720)
.+|..++.+|
T Consensus 231 l~~~~l~~lP 240 (350)
T 4ay9_X 231 RSTYNLKKLP 240 (350)
T ss_dssp TTCTTCCCCC
T ss_pred ccCCCcCcCC
Confidence 6666666654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=6.6e-14 Score=146.90 Aligned_cols=213 Identities=17% Similarity=0.160 Sum_probs=159.2
Q ss_pred EEEEcCCCCccCc--ccccccceeEEEeccccccc-CCC--CCCCCcccE-EEccCCCCcCcchHHhccCCcccEEEccC
Q 038398 476 FLVHAGLGLTEAP--EIQNWRNVRRMSLMKNKIEN-LSE--TPTCPHLLS-LFLSDNSLKMSTDDFFQSMPSLRVFNMSN 549 (720)
Q Consensus 476 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~-~~~--~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 549 (720)
.+...+.....++ .+.++++|++|++++|.+.. ++. +.+++++.. +.+.+|.+..+++..|.++++|++|++++
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 3445555566555 47889999999999999744 443 367777765 66677899999988899999999999999
Q ss_pred CCCCccCCccccCCCCCCEEeccC-CCCcccchh-hhcCC-CCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCc
Q 038398 550 NHLLWKLPSGISTLVSLEHLDLSS-TAITHLPIE-LQKLV-NLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSK 626 (720)
Q Consensus 550 ~~~~~~lp~~i~~l~~L~~L~L~~-~~i~~lp~~-i~~l~-~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~ 626 (720)
|.+....+..+....++.+|++.+ +.++.+|.. +..+. .|+.|++++ +.++.+|.. .....+|+.|.+.++ |.
T Consensus 114 n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~~~~L~~l~l~~~--n~ 189 (350)
T 4ay9_X 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFNGTQLDELNLSDN--NN 189 (350)
T ss_dssp ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SSTTEEEEEEECTTC--TT
T ss_pred cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hccccchhHHhhccC--Cc
Confidence 966655555666778889999976 478888764 55654 689999998 678888875 334556777766543 45
Q ss_pred ccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCccee
Q 038398 627 IERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKL 706 (720)
Q Consensus 627 l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L 706 (720)
+..++.. .+..+++|+.|+++.|.++.++. ..+.+|+.|.+.++++++.+| .+.++++|+.+
T Consensus 190 l~~i~~~-----------~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l 251 (350)
T 4ay9_X 190 LEELPND-----------VFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARSTYNLKKLP--TLEKLVALMEA 251 (350)
T ss_dssp CCCCCTT-----------TTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTCTTCCCCC--CTTTCCSCCEE
T ss_pred ccCCCHH-----------HhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccCCCcCcCC--CchhCcChhhC
Confidence 5444432 25677899999999998876532 234578888888888899988 68899999999
Q ss_pred eecC
Q 038398 707 YVAG 710 (720)
Q Consensus 707 ~l~~ 710 (720)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 9865
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=2e-13 Score=150.99 Aligned_cols=182 Identities=20% Similarity=0.276 Sum_probs=92.6
Q ss_pred ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC
Q 038398 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST 574 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (720)
+++.|++++|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++|.+. .+|. +++ +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCC
Confidence 4556666666665554421 255666666666655554 23456666666666433 3554 443 6666666666
Q ss_pred CCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCce
Q 038398 575 AITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMV 654 (720)
Q Consensus 575 ~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~ 654 (720)
.++.+|. .+++|+.|++++ +.+..+|. .+++|+.|++.+ |.+..++. +. ++|+.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~---N~L~~lp~-------------l~--~~L~~ 184 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRN---NQLTFLPE-------------LP--ESLEA 184 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCS---SCCSCCCC-------------CC--TTCCE
T ss_pred cCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCC---CCCCCcch-------------hh--CCCCE
Confidence 6666655 456666666665 34444553 344555555443 33322211 11 45666
Q ss_pred eEEEecchhhHHHHhhh-hhhhhhccccccccccCCCccccccccccCCcceeeecCCCC
Q 038398 655 LTITLKSWQALKELLIS-QELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 655 L~~~~~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~ 713 (720)
|+++.|.+..++.+... ......|+.|+|++ |.++.+| ..+..+++|+.|+|++|+.
T Consensus 185 L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp-~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRE-NRITHIP-ENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCSSCCSSCCCCC--------CCEEEECCS-SCCCCCC-GGGGGSCTTEEEECCSSSC
T ss_pred EECcCCCCCchhhHHHhhhcccccceEEecCC-CcceecC-HHHhcCCCCCEEEeeCCcC
Confidence 66665555433321000 00011126666665 4455665 3344466777777766653
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=6.2e-12 Score=134.03 Aligned_cols=320 Identities=12% Similarity=0.065 Sum_probs=189.5
Q ss_pred CCCcCchHHHHHHHHHhcC----CCce--EEEEEcCCCChHHHHHHHHHhhhcCCCCC-cCEEEEEEecCcCCHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVG--IIGLYGMGGVGKTTLLTKINNKLLGAPNV-FDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~ 198 (720)
+.++||+.+++++..++.. .... .+.|+|++|+||||||+.+++.. ... -..++|++++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 6789999999999988854 2334 89999999999999999999887 222 135678887777788889999
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEeccccc--cccccccccCCCC-C---CCcEEEEEcCChhHh
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWER--VDLTKVGIPFPDP-E---NKSKIVFTTHFLEIC 270 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~---~gs~iiiTtR~~~v~ 270 (720)
++..++...+. ...........+...+. +++.+|||||++.. ..+..+...+... . .+..+|++|+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99988754321 23345566666666654 56889999999764 2222222222111 1 366788887765432
Q ss_pred hhhc-------cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHh---------CCcchHHHHHH-HHH
Q 038398 271 GALK-------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQEC---------AGLPLALITIG-RAM 333 (720)
Q Consensus 271 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~-~~l 333 (720)
.... ....+.+++++.++..+++...+.... ....--.+....+++.+ +|.|..+..+. .+.
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2211 123689999999999999988764311 11122356788899999 78875444333 222
Q ss_pred h----cCCChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCC---CCcccChHHHHHHHHh
Q 038398 334 A----CKKTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFP---EDYRIRKSELIDCWIG 406 (720)
Q Consensus 334 ~----~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp---~~~~i~~~~li~~Wia 406 (720)
. .+...-.+..+...+.... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+-.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 1112222233222222211 1122333455776 6777777676553 2224555566554422
Q ss_pred ----hCCCCcccchhhHHhHHHHHHHHHHhccccccCC--CCCcccCCceEEE----ehHHHHHHHHHHHh
Q 038398 407 ----EGFLDQYDRSGAYNEGYYIIGILLHACLLEEEGG--DIGEEESGEHVVK----MHDVIRDMVLWIAC 467 (720)
Q Consensus 407 ----eg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~~~~~~~~~----mHdlv~~~a~~~~~ 467 (720)
.|... -.......++++|...+++..... ..+. .+....++ .|+++.++...+..
T Consensus 321 ~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~~~~~~~g~-~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 321 VCEEYGERP-----RVHSQLWSYLNDLREKGIVETRQNKRGEGV-RGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEEEC----------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEeeeccCCCC-CCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 12111 123456678999999999987542 1111 12222333 46777766665543
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=2.3e-13 Score=132.38 Aligned_cols=149 Identities=19% Similarity=0.316 Sum_probs=91.4
Q ss_pred EEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCc
Q 038398 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAIT 577 (720)
Q Consensus 498 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~ 577 (720)
.++++++.+..+|... .++|+.|++++|.++.+++..|.++++|++|+|++|.+....|..|.++++|++|+|++|.++
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4566666666655421 256777777777766666655667777777777777655555666777777777777777777
Q ss_pred ccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeE
Q 038398 578 HLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLT 656 (720)
Q Consensus 578 ~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 656 (720)
.+|.. +.++++|++|++++ +.+..++...+..+++|+.|++.+ |.+..++. ..+..+++|+.|.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~~-----------~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD---NKLQTIAK-----------GTFSPLRAIQTMH 158 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS---SCCSCCCT-----------TTTTTCTTCCEEE
T ss_pred ccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCC---CcCCEECH-----------HHHhCCCCCCEEE
Confidence 66654 46677777777766 455556544456666666665544 33332221 1244556666777
Q ss_pred EEecch
Q 038398 657 ITLKSW 662 (720)
Q Consensus 657 ~~~~~~ 662 (720)
+.+|.+
T Consensus 159 L~~N~~ 164 (220)
T 2v9t_B 159 LAQNPF 164 (220)
T ss_dssp CCSSCE
T ss_pred eCCCCc
Confidence 666654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=4.5e-13 Score=130.36 Aligned_cols=144 Identities=26% Similarity=0.278 Sum_probs=118.5
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLL 553 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 553 (720)
.+...+.....+|.. -.++++.|++++|.+..++. +..+++|+.|++++|.+..+.+..|.++++|++|+|++|.+.
T Consensus 15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 344555556666542 23689999999999988764 578999999999999999998888999999999999999665
Q ss_pred ccCCccccCCCCCCEEeccCCCCcccc-hhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 554 WKLPSGISTLVSLEHLDLSSTAITHLP-IELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 554 ~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
...+..+.++++|++|+|++|.++.++ ..|..+++|++|++++ +.+..++...+..+++|+.|++.+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCC
Confidence 443445789999999999999999884 5699999999999999 577888876678888888887764
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=1.5e-12 Score=138.71 Aligned_cols=292 Identities=16% Similarity=0.085 Sum_probs=178.2
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCC---CCcCEEEEEEecCcCCHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP---NVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
+.++||+++++++..++.. ...+.+.|+|++|+||||+|+.+++...... +.-..++|+++....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6789999999999998843 4567899999999999999999998762100 00125678888888888899999
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEeccccccc----cccc---cccCCCC--CCCcEEEEEcCCh
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERVD----LTKV---GIPFPDP--ENKSKIVFTTHFL 267 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~iiiTtR~~ 267 (720)
++.+++...+. ......+....+.+.+. +++.+|||||++.... .+.+ ....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99999764321 23345566677777764 4688999999975321 1111 1111111 3456778888765
Q ss_pred hH--------hhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhC---Ccch-HHHHHHHHHh-
Q 038398 268 EI--------CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECA---GLPL-ALITIGRAMA- 334 (720)
Q Consensus 268 ~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~l~- 334 (720)
.. ...+ ....+.+++++.++..+++...+.... ....--.+....+++.++ |.|- ++..+..+..
T Consensus 178 ~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 178 GFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAF-NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHB-CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 32 1111 124789999999999999998864211 001111345677888887 9994 4444333221
Q ss_pred ----c--CCChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhc-CCCCCcccChHHHHHHHH--
Q 038398 335 ----C--KKTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCG-LFPEDYRIRKSELIDCWI-- 405 (720)
Q Consensus 335 ----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~-~fp~~~~i~~~~li~~Wi-- 405 (720)
+ .-+.+.+..++..... ..+.-++..++. +.+..+..++ ++.....+....+.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 1245556555554321 234456777887 5666665555 332222444454444321
Q ss_pred --hhCCCCcccchhhHHhHHHHHHHHHHhccccccC
Q 038398 406 --GEGFLDQYDRSGAYNEGYYIIGILLHACLLEEEG 439 (720)
Q Consensus 406 --aeg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 439 (720)
..| .. .........+++.|...++++...
T Consensus 322 ~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 322 TSTLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 112 11 122356778899999999998753
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=6.1e-12 Score=133.83 Aligned_cols=291 Identities=12% Similarity=-0.013 Sum_probs=178.9
Q ss_pred CCCcCchHHHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHHhhhcCC----CCC-cCEEEEEEecCcC-CHHHH
Q 038398 126 EPTVGLESTFDKVWRCLG----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGA----PNV-FDVVIWVVVSKDL-QLEKI 195 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~v~~~~-~~~~~ 195 (720)
+.++||+++++++..++. .+..+.+.|+|++|+||||||+.+++..... .+. ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999987764 3446789999999999999999999875110 011 3367888887766 88888
Q ss_pred HHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc---ccc-ccccCCCCCCCcEEEEEcCChhHh-
Q 038398 196 QEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD---LTK-VGIPFPDPENKSKIVFTTHFLEIC- 270 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-l~~~~~~~~~gs~iiiTtR~~~v~- 270 (720)
...++..+..................+.+.+..++.+|||||++.... .+. +...+... .+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 888888873221111233456667788888888777999999975321 111 11111111 577888898865321
Q ss_pred ---hhh--ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhC---Ccch-HHHHHHHHH--hc---C
Q 038398 271 ---GAL--KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECA---GLPL-ALITIGRAM--AC---K 336 (720)
Q Consensus 271 ---~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~l--~~---~ 336 (720)
... .....+.+++++.++..+++...+.... ....--.+....+++.++ |.|. |+..+-.+. +. .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 111 1123899999999999999998864211 111122456778888888 8876 444444332 21 2
Q ss_pred CChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHHHHHhhCC-CCcccc
Q 038398 337 KTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELIDCWIGEGF-LDQYDR 415 (720)
Q Consensus 337 ~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~~Wiaeg~-~~~~~~ 415 (720)
-+.+.+..+++.... ..+..++..|++ ..+..+..++....+..+. .... -+++.+ ..
T Consensus 258 i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~--~~~~~~g~~---- 316 (384)
T 2qby_B 258 IRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYT--DLCNKFKQK---- 316 (384)
T ss_dssp CCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHH--HHHHHTTCC----
T ss_pred cCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHH--HHHHHcCCC----
Confidence 355666666554322 235556777887 6666666666511101111 1111 122211 11
Q ss_pred hhhHHhHHHHHHHHHHhccccccC
Q 038398 416 SGAYNEGYYIIGILLHACLLEEEG 439 (720)
Q Consensus 416 ~~~~~~~~~~~~~L~~~sll~~~~ 439 (720)
.........+++.|...++++...
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 112345678899999999998753
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=5.2e-13 Score=133.79 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=129.8
Q ss_pred CccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCC
Q 038398 484 LTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTL 563 (720)
Q Consensus 484 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l 563 (720)
..+.+.+..+++|+.|++++|.+..++.+..+++|+.|++++|.++.+++ +.++++|++|+|++|++. .+|.. ..
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~-~~- 105 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI-PS- 105 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTC-CC-
T ss_pred cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcc-cc-
Confidence 34455677889999999999999999888889999999999999999887 899999999999999554 56643 33
Q ss_pred CCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccH
Q 038398 564 VSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLV 643 (720)
Q Consensus 564 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~ 643 (720)
++|++|++++|.++.+| .+.++++|+.|++++ +.+..+|. ++.+++|+.|++.+ |.+..+
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~---N~i~~~------------- 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHG---NEITNT------------- 165 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTT---SCCCBC-------------
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCC---CcCcch-------------
Confidence 99999999999999987 599999999999999 56788874 78899999888776 444322
Q ss_pred HHhcCCCCCceeEEEecchhh
Q 038398 644 EELMGMKHLMVLTITLKSWQA 664 (720)
Q Consensus 644 ~~l~~l~~L~~L~~~~~~~~~ 664 (720)
..+..+++|+.|++++|.+..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 346778999999999987754
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=9.8e-13 Score=126.89 Aligned_cols=180 Identities=20% Similarity=0.240 Sum_probs=136.9
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
+.++..++.+..+|.. ..++|++|++++|.++.+++..|.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3567777777777643 356899999999999999988889999999999999966644455678999999999999999
Q ss_pred cccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCcee
Q 038398 577 THLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVL 655 (720)
Q Consensus 577 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L 655 (720)
+.+|.. +.++++|++|++++ +.+..+|...+..+++|+.|++.+ |.+..++. ..+..+++|+.|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~---N~l~~~~~-----------~~~~~l~~L~~L 153 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQ---NQLKSVPD-----------GVFDRLTSLQYI 153 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS---SCCSCCCT-----------TTTTTCTTCCEE
T ss_pred CccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCC---CccceeCH-----------HHhccCCCccEE
Confidence 998865 68999999999998 567888876678888888888876 44433322 235678999999
Q ss_pred EEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCC
Q 038398 656 TITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRN 702 (720)
Q Consensus 656 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~ 702 (720)
.++.|.+.. .+++|+.|+++.++....+| ..++.++.
T Consensus 154 ~l~~N~~~~---------~~~~l~~L~~~~n~~~g~ip-~~~~~l~~ 190 (208)
T 2o6s_A 154 WLHDNPWDC---------TCPGIRYLSEWINKHSGVVR-NSAGSVAP 190 (208)
T ss_dssp ECCSCCBCC---------CTTTTHHHHHHHHHCTTTBB-CTTSSBCT
T ss_pred EecCCCeec---------CCCCHHHHHHHHHhCCceee-ccCccccC
Confidence 999987642 22466777776654444555 44444443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=5.1e-13 Score=130.00 Aligned_cols=150 Identities=18% Similarity=0.285 Sum_probs=90.3
Q ss_pred EEEecccccccCCCCCCCCcccEEEccCCCCcCcc-hHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 498 RMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMST-DDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 498 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
.+++++|.+..+|.. -.+.++.|++++|.++.++ ...|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 566666666666542 1235567777777666663 34466677777777777755544455677777777777777777
Q ss_pred cccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCcee
Q 038398 577 THLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVL 655 (720)
Q Consensus 577 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L 655 (720)
+.+|.. |.++++|++|++++ +.+..++...+..+++|+.|++.+ |.+..++ +..+..+++|+.|
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~-----------~~~~~~l~~L~~L 158 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD---NQITTVA-----------PGAFDTLHSLSTL 158 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT---SCCCCBC-----------TTTTTTCTTCCEE
T ss_pred CccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC---CcCCEEC-----------HHHhcCCCCCCEE
Confidence 766544 66677777777776 345555444455666666665543 3333221 2234556667777
Q ss_pred EEEecchh
Q 038398 656 TITLKSWQ 663 (720)
Q Consensus 656 ~~~~~~~~ 663 (720)
.+++|.+.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 77666553
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.9e-13 Score=123.03 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=105.4
Q ss_pred ccceeEEEecccccc--cCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEE
Q 038398 493 WRNVRRMSLMKNKIE--NLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (720)
.++++.|++++|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367999999999987 66654 7889999999999988887 448899999999999997776688888889999999
Q ss_pred eccCCCCcccc--hhhhcCCCCCEEeccCCcCCCCCch---hhhhccccCceeecc
Q 038398 570 DLSSTAITHLP--IELQKLVNLKCLNLEYMNNLNQFPR---LVISAFSKLQVLRMF 620 (720)
Q Consensus 570 ~L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~~~ 620 (720)
++++|.++.+| ..+..+++|++|++++| .+..+|. ..++.+++|+.|++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 99999999875 77999999999999985 6677775 457888888888765
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=1.1e-13 Score=147.35 Aligned_cols=213 Identities=18% Similarity=0.125 Sum_probs=151.9
Q ss_pred ccccccceeEEEecccccccC------CCCCCCCcccEEEccCCCCcCc----chHH------hccCCcccEEEccCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENL------SETPTCPHLLSLFLSDNSLKMS----TDDF------FQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~----~~~~------~~~l~~L~~L~L~~~~~ 552 (720)
.+..+++|++|++++|.+... ..+..+++|++|++++|.+..+ |... +..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 345667899999999988653 1256789999999999855432 2221 47899999999999977
Q ss_pred Cc----cCCccccCCCCCCEEeccCCCCcc-----cchhhhcC---------CCCCEEeccCCcCCC--CCch--hhhhc
Q 038398 553 LW----KLPSGISTLVSLEHLDLSSTAITH-----LPIELQKL---------VNLKCLNLEYMNNLN--QFPR--LVISA 610 (720)
Q Consensus 553 ~~----~lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~l~~~~~l~--~lp~--~~~~~ 610 (720)
.. .+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++| .+. .+|. ..+..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHh
Confidence 65 478889999999999999999873 34445555 89999999995 343 3342 13567
Q ss_pred cccCceeeccccCCCcccchhcccccCCccccHH-HhcCCCCCceeEEEecchhh--HHHHhhhhhhhhhcccccccccc
Q 038398 611 FSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVE-ELMGMKHLMVLTITLKSWQA--LKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 611 l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~-~l~~l~~L~~L~~~~~~~~~--l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
+++|++|.+.+|. +.... ...... .+..+++|+.|.++.|.+.. ...++.....+++|+.|+|++|.
T Consensus 186 ~~~L~~L~L~~n~---l~~~g-------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 186 HRLLHTVKMVQNG---IRPEG-------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp CTTCCEEECCSSC---CCHHH-------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CCCcCEEECcCCC---CCHhH-------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 8888888887653 32110 001222 57789999999999998753 23445555666799999999855
Q ss_pred CCCcccc----ccc--cccCCcceeeecCCCC
Q 038398 688 DSKSLDI----FCL--AGLRNLNKLYVAGCKH 713 (720)
Q Consensus 688 ~l~~l~~----~~l--~~l~~L~~L~l~~c~~ 713 (720)
++.... ..+ ..+++|+.|+|++|..
T Consensus 256 -i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 256 -LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred -CchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 544421 234 3489999999999873
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=2.8e-13 Score=125.89 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=106.7
Q ss_pred cceeEEEecccccc--cCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEe
Q 038398 494 RNVRRMSLMKNKIE--NLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLD 570 (720)
Q Consensus 494 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 570 (720)
++++.|++++|.+. .++.. ..+++|++|++++|.++.+ ..+..+++|++|+|++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67899999999987 67665 6788999999999988877 4488899999999999977666887777899999999
Q ss_pred ccCCCCcccc--hhhhcCCCCCEEeccCCcCCCCCch---hhhhccccCceeeccccCCC
Q 038398 571 LSSTAITHLP--IELQKLVNLKCLNLEYMNNLNQFPR---LVISAFSKLQVLRMFDCGGS 625 (720)
Q Consensus 571 L~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~---~~~~~l~~L~~L~~~~~~~~ 625 (720)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|+.|++.++...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999876 67889999999999984 6677775 45788888888888876543
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=7.9e-13 Score=128.61 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=118.7
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC---CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE---TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
.+...+.....+|. .-...++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+
T Consensus 15 ~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 34444555555553 223567899999999988743 46889999999999999999987899999999999999977
Q ss_pred CccCCccccCCCCCCEEeccCCCCccc-chhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITHL-PIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
.+..|..+..+++|++|+|++|.++.+ |..+..+++|++|++++ +.+..++...+..+++|+.|++.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecC
Confidence 766677799999999999999999988 56799999999999999 567777555578888888887764
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=6e-13 Score=151.62 Aligned_cols=216 Identities=22% Similarity=0.228 Sum_probs=140.7
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
+.+.+.+...+|.- -..++++|+|++|.++.++. +.++++|++|++++|.++.+++..|.++++|++|+|++|++..
T Consensus 36 ~~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 36 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 34445556666642 12478999999999988764 5789999999999999999988889999999999999996654
Q ss_pred cCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCC--chhhhhccccCceeeccccCCCcccchh
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQF--PRLVISAFSKLQVLRMFDCGGSKIERLK 631 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~l--p~~~~~~l~~L~~L~~~~~~~~~l~~l~ 631 (720)
..|..|.++++|++|+|++|.++.+|.. |+++++|++|++++| .+..+ |. .++.+++|++|++.+ |.+..++
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~L~~---N~l~~~~ 189 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSS---NKIQSIY 189 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECCS---SCCCEEC
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCch-hhccchhhhhhcccC---ccccccc
Confidence 4456789999999999999999988764 889999999999984 45543 44 367788888887765 4444333
Q ss_pred cccccCCccccHHHhcCCCC-CceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceeeec
Q 038398 632 INVLFGGHQFLVEELMGMKH-LMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVA 709 (720)
Q Consensus 632 ~~~~~~~~~~~~~~l~~l~~-L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~ 709 (720)
.. .+..+..++. +..+.++.+.+..+. ........+..+++.++.....+....+.+++.|+...+.
T Consensus 190 ~~--------~l~~L~~l~~~~~~~~ls~n~l~~i~---~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 190 CT--------DLRVLHQMPLLNLSLDLSLNPMNFIQ---PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp GG--------GGHHHHTCTTCCCEEECTTCCCCEEC---TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred cc--------cccchhhhhhhhhhhhcccCcccccC---cccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 21 1223333322 223444444433221 1111112455566654322222222346667766655553
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.2e-12 Score=128.20 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=123.0
Q ss_pred eeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
.+.++.+++.+..+|.. -.++|++|++++|.+..+++..|.++++|++|+|++|.+....+..+..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34688888888888763 34899999999999999988889999999999999996643334567999999999999999
Q ss_pred Ccccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCce
Q 038398 576 ITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMV 654 (720)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~ 654 (720)
++.+|.. +..+++|++|++++ +.+..+|.. +..+++|+.|++.+ |.+..++. ..+..+++|+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~---N~l~~~~~-----------~~~~~l~~L~~ 163 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQ---NQLKSIPH-----------GAFDRLSSLTH 163 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCS---SCCCCCCT-----------TTTTTCTTCCE
T ss_pred CCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCC---CcCCccCH-----------HHHhCCCCCCE
Confidence 9999866 68999999999999 578899875 68888988888765 55543332 23567889999
Q ss_pred eEEEecchh
Q 038398 655 LTITLKSWQ 663 (720)
Q Consensus 655 L~~~~~~~~ 663 (720)
|.+.+|.+.
T Consensus 164 L~l~~N~~~ 172 (229)
T 3e6j_A 164 AYLFGNPWD 172 (229)
T ss_dssp EECTTSCBC
T ss_pred EEeeCCCcc
Confidence 999988653
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3.7e-13 Score=126.10 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=89.2
Q ss_pred cccccccceeEEEecccccccCCCCCCCC-cccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCcc-ccCCCC
Q 038398 488 PEIQNWRNVRRMSLMKNKIENLSETPTCP-HLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSG-ISTLVS 565 (720)
Q Consensus 488 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~ 565 (720)
+.+.++.+++.|++++|.+..++.+..+. +|++|++++|.++.+ ..|..+++|++|+|++|.+. .+|.. ++.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 34555667788888888777766554444 778888888877766 23677777888888877544 44433 377778
Q ss_pred CCEEeccCCCCcccch--hhhcCCCCCEEeccCCcCCCCCchh---hhhccccCceeecccc
Q 038398 566 LEHLDLSSTAITHLPI--ELQKLVNLKCLNLEYMNNLNQFPRL---VISAFSKLQVLRMFDC 622 (720)
Q Consensus 566 L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~---~~~~l~~L~~L~~~~~ 622 (720)
|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. .+..+++|+.|++.++
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 8888888877777776 6777777888888773 45556653 3566666666666543
No 115
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=2.2e-12 Score=137.36 Aligned_cols=289 Identities=13% Similarity=0.068 Sum_probs=173.7
Q ss_pred CCCcCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCC---cCEEEEEEecCcCCHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNV---FDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~~~ 198 (720)
+.++||+++++.+.+++.. .....+.|+|++|+||||||+.+++.. ... -..++|+++....+...+...
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL---HKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH---HHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH---HHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 6799999999999998863 456789999999999999999999876 222 235778887777777888888
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHhcc--CcEEEEEecccccc------ccccccccCCC-CCCCcEEEEEcCChhH
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRILGK--KKFLLLLDDIWERV------DLTKVGIPFPD-PENKSKIVFTTHFLEI 269 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~iiiTtR~~~v 269 (720)
++..++...+. ...+..+....+.+.+.. ++.+||||+++... .+..+...+.. ...+..+|+||+....
T Consensus 97 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 97 LLESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HTTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 88887654321 223455556666666653 48999999997532 12222111111 2335567778876543
Q ss_pred hhhhc-------cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhC---CcchHH-HHHHHHHh----
Q 038398 270 CGALK-------AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECA---GLPLAL-ITIGRAMA---- 334 (720)
Q Consensus 270 ~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLai-~~~~~~l~---- 334 (720)
...+. ....+.+++++.++..+++...+.... ....-..+....+++.++ |.|..+ ..+..+..
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 22211 124789999999999999998754211 112233566777888887 998844 43333221
Q ss_pred -c--CCChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCC-C-cccChHHHHHHH--Hh-
Q 038398 335 -C--KKTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPE-D-YRIRKSELIDCW--IG- 406 (720)
Q Consensus 335 -~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~-~-~~i~~~~li~~W--ia- 406 (720)
+ .-+.+.+..++.... ...+.-.+..+|. ..+..+..++.+.+ + ..+....+.+.. ++
T Consensus 255 ~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 124445554444322 1234555667777 56666665553211 1 123333332221 11
Q ss_pred -hCCCCcccchhhHHhHHHHHHHHHHhcccccc
Q 038398 407 -EGFLDQYDRSGAYNEGYYIIGILLHACLLEEE 438 (720)
Q Consensus 407 -eg~~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 438 (720)
.|. .. ........+++.|...++++..
T Consensus 321 ~~g~-~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLGV-EA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHTC-CC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCC-CC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 121 11 1224566789999999999775
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=6.3e-13 Score=139.98 Aligned_cols=172 Identities=25% Similarity=0.338 Sum_probs=131.8
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCCC--C-CCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSET--P-TCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
.+...+..+..+|. .-...++.|++++|.+..++.. . .+++|+.|++++|.+..+++..|.++++|++|+|++|.+
T Consensus 22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 44555555666654 2235689999999999887653 3 889999999999999999988899999999999999977
Q ss_pred CccCCccccCCCCCCEEeccCCCCccc-chhhhcCCCCCEEeccCCcCCCCCchhhh---hccccCceeeccccCCCccc
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITHL-PIELQKLVNLKCLNLEYMNNLNQFPRLVI---SAFSKLQVLRMFDCGGSKIE 628 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~~~~---~~l~~L~~L~~~~~~~~~l~ 628 (720)
....+..|.++++|++|+|++|.|+.+ |..|.++++|++|+|++ +.+..+|...+ ..+++|+.|++. .|.+.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~---~N~l~ 176 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLS---SNKLK 176 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECC---SSCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECC---CCCCC
Confidence 655566799999999999999999988 56799999999999999 67888998655 456777777665 46665
Q ss_pred chhcccccCCccccHHHhcCCCC--CceeEEEecchh
Q 038398 629 RLKINVLFGGHQFLVEELMGMKH--LMVLTITLKSWQ 663 (720)
Q Consensus 629 ~l~~~~~~~~~~~~~~~l~~l~~--L~~L~~~~~~~~ 663 (720)
.++. ..+..++. |+.|.+.+|.+.
T Consensus 177 ~l~~-----------~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPL-----------TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCH-----------HHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCH-----------HHhhhccHhhcceEEecCCCcc
Confidence 4442 23334443 366787776653
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=9.7e-14 Score=139.10 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=132.1
Q ss_pred cccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEec
Q 038398 492 NWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDL 571 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L 571 (720)
.+.++..+.+..+.+..++.+..+++|++|++++|.++.++ .+..+++|++|+|++|.+. .+|. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEEC
Confidence 45567777888888888877778899999999999998887 3889999999999999554 5555 999999999999
Q ss_pred cCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCC
Q 038398 572 SSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKH 651 (720)
Q Consensus 572 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 651 (720)
++|.++.+|.. .. ++|++|++++ +.+..++. ++.+++|+.|++.+ |.+..+ ..+..+++
T Consensus 93 ~~N~l~~l~~~-~~-~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~Ls~---N~i~~~-------------~~l~~l~~ 151 (263)
T 1xeu_A 93 NRNRLKNLNGI-PS-ACLSRLFLDN-NELRDTDS--LIHLKNLEILSIRN---NKLKSI-------------VMLGFLSK 151 (263)
T ss_dssp CSSCCSCCTTC-CC-SSCCEEECCS-SCCSBSGG--GTTCTTCCEEECTT---SCCCBC-------------GGGGGCTT
T ss_pred CCCccCCcCcc-cc-CcccEEEccC-CccCCChh--hcCcccccEEECCC---CcCCCC-------------hHHccCCC
Confidence 99999998864 34 9999999999 46777775 78888888887765 444322 13667889
Q ss_pred CceeEEEecchhhHHHHhhhhhhhhhcccccccccc
Q 038398 652 LMVLTITLKSWQALKELLISQELQRSTQSLFLRCFN 687 (720)
Q Consensus 652 L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 687 (720)
|+.|+++.|.+..+ .....+++|+.|++++++
T Consensus 152 L~~L~L~~N~i~~~----~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 152 LEVLDLHGNEITNT----GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCEEECTTSCCCBC----TTSTTCCCCCEEEEEEEE
T ss_pred CCEEECCCCcCcch----HHhccCCCCCEEeCCCCc
Confidence 99999998888766 333455688999998743
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=2.6e-12 Score=139.30 Aligned_cols=131 Identities=27% Similarity=0.353 Sum_probs=80.0
Q ss_pred EEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccC
Q 038398 477 LVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKL 556 (720)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l 556 (720)
+...+.....+|.+..+++|++|++++|.+..+|.. .++|++|++++|.++.++ . +.++++|++|++++|.+. .+
T Consensus 136 L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N~l~-~l 210 (454)
T 1jl5_A 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNNSLK-KL 210 (454)
T ss_dssp EECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCS-SC
T ss_pred EECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCCcCC-cC
Confidence 333344444555677777777777777777766543 247777777777776665 2 677777777777777443 34
Q ss_pred CccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 557 PSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 557 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
|... .+|++|++++|.++.+|. ++.+++|++|++++ +.+..+|. .+++|+.|++.+
T Consensus 211 ~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~-N~l~~l~~----~~~~L~~L~l~~ 266 (454)
T 1jl5_A 211 PDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADN-NLLKTLPD----LPPSLEALNVRD 266 (454)
T ss_dssp CCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCS-SCCSSCCS----CCTTCCEEECCS
T ss_pred CCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCC-CcCCcccc----cccccCEEECCC
Confidence 4322 466677777776666663 66677777777766 34455553 224455554443
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=1.8e-12 Score=147.74 Aligned_cols=126 Identities=19% Similarity=0.298 Sum_probs=71.1
Q ss_pred ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|++|++++|.+..++. +.++++|++|++++|.++.+++..|.++++|++|+|++|++.+..|..|+++++|
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 35556666666666666655543 3556666666666666666665556666666666666664443333446666666
Q ss_pred CEEeccCCCCcc--cchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCc
Q 038398 567 EHLDLSSTAITH--LPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQ 615 (720)
Q Consensus 567 ~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~ 615 (720)
++|++++|.++. +|..++.+++|++|++++ +.+..++...+..+.+++
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCT
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhhhh
Confidence 666666666553 345556666666666665 344444433344444433
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.37 E-value=2.4e-12 Score=139.55 Aligned_cols=94 Identities=30% Similarity=0.445 Sum_probs=40.9
Q ss_pred cceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccC
Q 038398 494 RNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSS 573 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~ 573 (720)
++++.|++++|.+..++... ++|++|++++|.++.++ . |.++++|++|++++|.+. .+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcC
Confidence 34444444444444333221 34445555554444443 1 444455555555544322 233222 2444444444
Q ss_pred CCCcccchhhhcCCCCCEEeccC
Q 038398 574 TAITHLPIELQKLVNLKCLNLEY 596 (720)
Q Consensus 574 ~~i~~lp~~i~~l~~L~~L~l~~ 596 (720)
|.++.+| .++++++|++|++++
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCS
T ss_pred CcCCcCc-cccCCCCCCEEECCC
Confidence 4444444 344444444444444
No 121
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=4.3e-13 Score=138.19 Aligned_cols=173 Identities=16% Similarity=0.098 Sum_probs=132.6
Q ss_pred ccccceeEEEecccccccCCC------CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc--C--Cccc
Q 038398 491 QNWRNVRRMSLMKNKIENLSE------TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK--L--PSGI 560 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--l--p~~i 560 (720)
..+++|+.|++++|.+..... ...+++|++|++++|.+..+++..|.++++|++|+|++|++.+. + +..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 778999999999999875321 24689999999999999999988899999999999999976542 3 2334
Q ss_pred cCCCCCCEEeccCCCCcccchh----hhcCCCCCEEeccCCcCCCCC-chhhhhcc---ccCceeeccccCCCcccchhc
Q 038398 561 STLVSLEHLDLSSTAITHLPIE----LQKLVNLKCLNLEYMNNLNQF-PRLVISAF---SKLQVLRMFDCGGSKIERLKI 632 (720)
Q Consensus 561 ~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~l~~~~~l~~l-p~~~~~~l---~~L~~L~~~~~~~~~l~~l~~ 632 (720)
+.+++|++|++++|.++.+|.. +.++++|++|++++| .+..+ |.. +..+ ++|++|++. .|.+..++.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~~~~~~~L~~L~Ls---~N~l~~lp~ 268 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-APRCMWSSALNSLNLS---FAGLEQVPK 268 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CSSCCCCTTCCCEECC---SSCCCSCCS
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HHhccCcCcCCEEECC---CCCCCchhh
Confidence 7899999999999999887663 578899999999995 55655 543 5565 466666665 466654432
Q ss_pred ccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccc
Q 038398 633 NVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCF 686 (720)
Q Consensus 633 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 686 (720)
. + .++|+.|+++.|.+..++. ...+++|+.|+++++
T Consensus 269 ~------------~--~~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 269 G------------L--PAKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDGN 304 (310)
T ss_dssp C------------C--CSCCSCEECCSCCCCSCCC----TTSCCCCSCEECSST
T ss_pred h------------h--cCCCCEEECCCCcCCCCch----hhhCCCccEEECcCC
Confidence 1 1 2689999999998876532 234468999999874
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.35 E-value=9.3e-13 Score=138.85 Aligned_cols=103 Identities=23% Similarity=0.324 Sum_probs=53.9
Q ss_pred ceeEEEecccccccCCC------CCCCC-cccEEEccCCCCcCcchHHhccC-----CcccEEEccCCCCCccCCcccc-
Q 038398 495 NVRRMSLMKNKIENLSE------TPTCP-HLLSLFLSDNSLKMSTDDFFQSM-----PSLRVFNMSNNHLLWKLPSGIS- 561 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~~lp~~i~- 561 (720)
++++|++++|.+...+. +..++ +|++|++++|.+....+..+..+ ++|++|+|++|.+....+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 36666666666654432 23444 56666666666555544444443 6666666666644433333222
Q ss_pred ---CC-CCCCEEeccCCCCcccchh-----hhc-CCCCCEEeccCC
Q 038398 562 ---TL-VSLEHLDLSSTAITHLPIE-----LQK-LVNLKCLNLEYM 597 (720)
Q Consensus 562 ---~l-~~L~~L~L~~~~i~~lp~~-----i~~-l~~L~~L~l~~~ 597 (720)
.+ ++|++|++++|.++..+.. +.. .++|++|++++|
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 22 5666666666666544322 222 246666666653
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=3.1e-13 Score=142.54 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=125.8
Q ss_pred ccccc-ceeEEEecccccccCCC--CCC-----CCcccEEEccCCCCcCcchHH----hccC-CcccEEEccCCCCCccC
Q 038398 490 IQNWR-NVRRMSLMKNKIENLSE--TPT-----CPHLLSLFLSDNSLKMSTDDF----FQSM-PSLRVFNMSNNHLLWKL 556 (720)
Q Consensus 490 ~~~~~-~l~~L~l~~~~~~~~~~--~~~-----~~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~L~~~~~~~~l 556 (720)
+..++ +|+.|++++|.+..... +.. +++|++|++++|.++...+.. +..+ ++|++|+|++|.+....
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 34455 78888888887765421 111 378888888888877666543 3334 78888888888655443
Q ss_pred Cccc----cC-CCCCCEEeccCCCCc-----ccchhhhcCC-CCCEEeccCCcCCCCCchhhh----hcc-ccCceeecc
Q 038398 557 PSGI----ST-LVSLEHLDLSSTAIT-----HLPIELQKLV-NLKCLNLEYMNNLNQFPRLVI----SAF-SKLQVLRMF 620 (720)
Q Consensus 557 p~~i----~~-l~~L~~L~L~~~~i~-----~lp~~i~~l~-~L~~L~l~~~~~l~~lp~~~~----~~l-~~L~~L~~~ 620 (720)
+..+ .. ..+|++|+|++|.++ .++..+..++ +|++|++++| .+...+...+ ..+ ++|++|++.
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 3333 23 258888888888877 4555566665 8888888885 4444433222 233 467777666
Q ss_pred ccCCCcccchhcccccCCccccHHHhcC-CCCCceeEEEecchhhH--HHHhhhhhhhhhcccccccccc--CC-----C
Q 038398 621 DCGGSKIERLKINVLFGGHQFLVEELMG-MKHLMVLTITLKSWQAL--KELLISQELQRSTQSLFLRCFN--DS-----K 690 (720)
Q Consensus 621 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~-l~~L~~L~~~~~~~~~l--~~l~~~~~~~~~L~~L~l~~~~--~l-----~ 690 (720)
+ |.+.... .......+.. .++|+.|++++|.+... ..+......+++|+.|++++|. .+ .
T Consensus 205 ~---N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 205 A---NLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp T---SCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred C---CCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 4 3333211 1112333444 35788888887766443 3344444555678888887754 11 1
Q ss_pred ccccccccccCCcceeeecCCC
Q 038398 691 SLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 691 ~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
.+. ..+.++++|+.|++++|+
T Consensus 275 ~l~-~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 275 ALG-AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHH-TTSTTCCEEEEECTTSCB
T ss_pred HHH-HHhccCCceEEEecCCCc
Confidence 111 245667778888888776
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=117.16 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=101.1
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
+.++++++.+..+|.. -.++|++|++++|.++.++. .|.++++|++|+|++|.+....|..|.++++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4688888888888753 23689999999999988874 589999999999999977766667899999999999999999
Q ss_pred cccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 577 THLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 577 ~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
+.+|. .|.++++|++|+|++ +.+..+|...+..+++|+.|++.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 98875 588999999999998 577888876677788888777654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=8.9e-12 Score=118.34 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=97.4
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchH-HhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDD-FFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
+.++++++.+..+|... ..+|++|++++|.+..+++. .|..+++|++|+|++|.+.+..|..+.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 57888888888877632 24889999999988888764 47889999999999997777778889999999999999999
Q ss_pred Ccccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 576 ITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
++.+|.. +.++++|++|++++ +.+..++...+..+++|+.|++.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC
Confidence 9887654 88899999999988 456656444467777777776654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=1.6e-11 Score=113.91 Aligned_cols=128 Identities=24% Similarity=0.279 Sum_probs=106.3
Q ss_pred EEEEcCCCCc--cCcc-cccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 476 FLVHAGLGLT--EAPE-IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 476 ~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
.+...+.... .+|. +..+++|+.|++++|.+..++.+..+++|++|++++|.+....+..+.++++|++|+|++|.+
T Consensus 28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence 3444444444 4443 478899999999999999887778999999999999999886666688899999999999955
Q ss_pred CccCC--ccccCCCCCCEEeccCCCCcccch----hhhcCCCCCEEeccCCcCCCCCch
Q 038398 553 LWKLP--SGISTLVSLEHLDLSSTAITHLPI----ELQKLVNLKCLNLEYMNNLNQFPR 605 (720)
Q Consensus 553 ~~~lp--~~i~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~ 605 (720)
. .+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.
T Consensus 108 ~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 108 K-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp C-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred C-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 4 544 789999999999999999999987 7999999999999995 4566664
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.8e-11 Score=114.67 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=94.1
Q ss_pred eeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
.+.+++.++.+..+|. ...++|+.|++++|.++.+++..|.++++|++|+|++|.+....+..++.+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3467777787777764 234688888888888888887777888888888888886654444557888888888888888
Q ss_pred Ccccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 576 ITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
++.+|.. +.++++|++|++++ +.+..+|...+..+++|++|++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecC
Confidence 8888765 67888888888888 467777776556777777776654
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=7.7e-12 Score=138.28 Aligned_cols=190 Identities=19% Similarity=0.178 Sum_probs=129.2
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK 555 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (720)
.+...+.....+|... +++|+.|++++|.+..+| ..+++|++|++++|.++.++. +.+ +|++|+|++|.+. .
T Consensus 63 ~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~-~ 134 (571)
T 3cvr_A 63 ELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLT-M 134 (571)
T ss_dssp EEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS-C
T ss_pred EEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCC-C
Confidence 4444454555555421 378999999999999888 567899999999999888776 444 8999999999655 4
Q ss_pred CCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccc
Q 038398 556 LPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVL 635 (720)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~ 635 (720)
+|. .+++|++|++++|.++.+|. .+++|++|++++ |.+..+|. +. ++|+.|++.+ |.+..++. +
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~---N~L~~lp~--~ 198 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVST---NLLESLPA--V 198 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCS---SCCSSCCC--C
T ss_pred CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcC---CCCCchhh--H
Confidence 776 68899999999999999986 678999999998 46777887 44 6777777665 55554443 1
Q ss_pred cCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccc
Q 038398 636 FGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAG 699 (720)
Q Consensus 636 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~ 699 (720)
.. .-....+.|+.|++++|.+..++ .....+++|+.|+|++++ +.......+..
T Consensus 199 ~~------~L~~~~~~L~~L~Ls~N~l~~lp---~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~ 252 (571)
T 3cvr_A 199 PV------RNHHSEETEIFFRCRENRITHIP---ENILSLDPTCTIILEDNP-LSSRIRESLSQ 252 (571)
T ss_dssp C--------------CCEEEECCSSCCCCCC---GGGGGSCTTEEEECCSSS-CCHHHHHHHHH
T ss_pred HH------hhhcccccceEEecCCCcceecC---HHHhcCCCCCEEEeeCCc-CCCcCHHHHHH
Confidence 10 00122344588888888776543 333336688888888744 43333244433
No 129
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=3.6e-11 Score=118.92 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=115.1
Q ss_pred CCCcCchHHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
..++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.... ...+.. ..+ ..... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~---~~~---~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA---TPC---GVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS---SCC---SCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC---CCC---cccHH-HHHHhccCC
Confidence 568999999999999986543 458899999999999999999987621 111100 000 00000 001110000
Q ss_pred CCCCcc--CCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChhHh-h-hh
Q 038398 205 FFDESW--KNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLEIC-G-AL 273 (720)
Q Consensus 205 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v~-~-~~ 273 (720)
...-.. ...........+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+..... . ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 000000 0000111112222221 346799999999753 33444433333334567888888764321 1 11
Q ss_pred ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 038398 274 KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAM 333 (720)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 333 (720)
.....+++++++.++..+++...+..... .--.+....|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22357899999999999999988754321 1125668899999999999888776543
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.27 E-value=1.8e-12 Score=141.52 Aligned_cols=210 Identities=19% Similarity=0.140 Sum_probs=139.2
Q ss_pred cccccceeEEEecccccccCCC--C-----CCCCcccEEEccCCCCcCcc----hHHhccCCcccEEEccCCCCCcc---
Q 038398 490 IQNWRNVRRMSLMKNKIENLSE--T-----PTCPHLLSLFLSDNSLKMST----DDFFQSMPSLRVFNMSNNHLLWK--- 555 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~--~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~--- 555 (720)
+..+++|++|++++|.+..... + ...++|++|++++|.++... +..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 3445788899999888754211 1 13568999999999887642 44577889999999999854432
Q ss_pred -C-CccccCCCCCCEEeccCCCCcc-----cchhhhcCCCCCEEeccCCcCCCCCchhhhhc-----cccCceeeccccC
Q 038398 556 -L-PSGISTLVSLEHLDLSSTAITH-----LPIELQKLVNLKCLNLEYMNNLNQFPRLVISA-----FSKLQVLRMFDCG 623 (720)
Q Consensus 556 -l-p~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~-----l~~L~~L~~~~~~ 623 (720)
+ +..+..+++|++|++++|.++. +|..+.++++|++|++++| .+...+...+.. .++|+.|++.+|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 1 2223468899999999998886 7778888999999999885 333211111222 2578888877654
Q ss_pred CCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHH--HHhhhhh-hhhhccccccccccCCC-----ccccc
Q 038398 624 GSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALK--ELLISQE-LQRSTQSLFLRCFNDSK-----SLDIF 695 (720)
Q Consensus 624 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~--~l~~~~~-~~~~L~~L~l~~~~~l~-----~l~~~ 695 (720)
... .. .......+..+++|+.|++++|.+.... .+..... ..++|+.|++++|. ++ .++ .
T Consensus 325 l~~---~~-------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~-~ 392 (461)
T 1z7x_W 325 FTA---AC-------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA-A 392 (461)
T ss_dssp CBG---GG-------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-H
T ss_pred Cch---HH-------HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH-H
Confidence 221 11 1123456677889999999988775532 2222211 14589999999854 44 343 4
Q ss_pred cccccCCcceeeecCCC
Q 038398 696 CLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 696 ~l~~l~~L~~L~l~~c~ 712 (720)
.+..+++|+.|++++|+
T Consensus 393 ~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHCCCCCEEECCSSS
T ss_pred HHHhCCCccEEECCCCC
Confidence 56778999999999886
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=7.3e-12 Score=143.70 Aligned_cols=114 Identities=23% Similarity=0.338 Sum_probs=62.9
Q ss_pred chHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhhcc
Q 038398 532 TDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAF 611 (720)
Q Consensus 532 ~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l 611 (720)
++..|..++.|++|+|++|.+ ..+|..+..+++|++|+|++|.|+.+|..|++|++|++|+|++ +.+..+|.. ++.|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-LGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS-GGGG
T ss_pred ChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh-hcCC
Confidence 344456666666666666643 3566666666666666666666666666666666666666666 345566554 5566
Q ss_pred ccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchh
Q 038398 612 SKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQ 663 (720)
Q Consensus 612 ~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~ 663 (720)
++|+.|++.++ .+..++ ..++.+++|+.|++++|.+.
T Consensus 293 ~~L~~L~L~~N---~l~~lp------------~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDN---MVTTLP------------WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSS---CCCCCC------------SSTTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCC---CCCccC------------hhhhcCCCccEEeCCCCccC
Confidence 66666655542 322221 12455666666666666554
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1e-11 Score=116.17 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=105.1
Q ss_pred EEEEcCCCCccCccccccc-ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 476 FLVHAGLGLTEAPEIQNWR-NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
.+...+.....++.+..+. +|+.|++++|.+..++.+..+++|++|++++|.++.+++..|..+++|++|+|++|.+ +
T Consensus 23 ~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~ 101 (176)
T 1a9n_A 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-V 101 (176)
T ss_dssp EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-C
T ss_pred EEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-C
Confidence 3444555555666666666 9999999999999888889999999999999999999888789999999999999955 6
Q ss_pred cCCc--cccCCCCCCEEeccCCCCcccchh----hhcCCCCCEEeccCC
Q 038398 555 KLPS--GISTLVSLEHLDLSSTAITHLPIE----LQKLVNLKCLNLEYM 597 (720)
Q Consensus 555 ~lp~--~i~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~l~~~ 597 (720)
.+|. .++.+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 102 ~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7776 889999999999999999999885 999999999999985
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.25 E-value=5e-11 Score=116.12 Aligned_cols=183 Identities=11% Similarity=0.092 Sum_probs=115.0
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+...+...+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhc
Confidence 56899999999999999776555699999999999999999988751 11121 2344444433333333222222111
Q ss_pred CCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChhHh-h-hhccCceee
Q 038398 205 FFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLEIC-G-ALKAHEFLK 280 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v~-~-~~~~~~~~~ 280 (720)
... .-.+++.+||+||++.. .....+...+.....+.++|+||+..... . .......+.
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 100 01257889999999763 22233322222234567888888765321 1 112234789
Q ss_pred ccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 281 VECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 281 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
+.+++.++..+++...+...... --.+....+++.++|.|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999887532211 124667889999999998654443
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.24 E-value=3.3e-12 Score=139.51 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=71.9
Q ss_pred cccccceeEEEecccccccCC-----C--CCCCCcccEEEccCCCCcCcc----hHHhccCCcccEEEccCCCCCccCCc
Q 038398 490 IQNWRNVRRMSLMKNKIENLS-----E--TPTCPHLLSLFLSDNSLKMST----DDFFQSMPSLRVFNMSNNHLLWKLPS 558 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~-----~--~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~ 558 (720)
+..+++|++|++++|.+.... . ....++|++|++++|.++... +..+..+++|++|++++|.+....+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 445567777777777654210 0 122456777777777665533 33355667777777777754333222
Q ss_pred ccc-----CCCCCCEEeccCCCCcc-----cchhhhcCCCCCEEeccCCcCCCCC-----chhhhhccccCceeecccc
Q 038398 559 GIS-----TLVSLEHLDLSSTAITH-----LPIELQKLVNLKCLNLEYMNNLNQF-----PRLVISAFSKLQVLRMFDC 622 (720)
Q Consensus 559 ~i~-----~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~l-----p~~~~~~l~~L~~L~~~~~ 622 (720)
.+. .+++|++|++++|.++. +|..+..+++|++|++++| .+... +......+++|++|++.+|
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 222 24567777777776664 4555666677777777664 22221 1111223556666666554
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=3.4e-11 Score=109.21 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=100.3
Q ss_pred EEEEcCCCCc--cCc-ccccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 476 FLVHAGLGLT--EAP-EIQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 476 ~~~~~~~~~~--~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
.+...+.... .++ .+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC
Confidence 3444444443 333 4578899999999999999887778999999999999999886666688899999999999965
Q ss_pred Ccc-CCccccCCCCCCEEeccCCCCcccch----hhhcCCCCCEEeccC
Q 038398 553 LWK-LPSGISTLVSLEHLDLSSTAITHLPI----ELQKLVNLKCLNLEY 596 (720)
Q Consensus 553 ~~~-lp~~i~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~l~~ 596 (720)
.+. .|..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 542 34789999999999999999998886 689999999999863
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=4.4e-11 Score=113.49 Aligned_cols=121 Identities=24% Similarity=0.270 Sum_probs=103.5
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW 554 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 554 (720)
.+...+.....+|.. -.++++.|++++|.+..+|. +..+++|+.|++++|.++.+++..|.++++|++|+|++|.+..
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 344555555666542 24689999999999988863 4788999999999999999998889999999999999998776
Q ss_pred cCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCC
Q 038398 555 KLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYM 597 (720)
Q Consensus 555 ~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~ 597 (720)
..|..|..+++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 6677899999999999999999999875 889999999999984
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=3.7e-11 Score=114.02 Aligned_cols=121 Identities=23% Similarity=0.269 Sum_probs=102.7
Q ss_pred EEEEcCCCCccCcccccccceeEEEecccccccCCC---CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCC
Q 038398 476 FLVHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE---TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHL 552 (720)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 552 (720)
.+...+.....+|.. -..+++.|++++|.+..++. +..+++|++|++++|.++.+.+..|.++++|++|+|++|.+
T Consensus 12 ~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 344455555566542 23489999999999988765 46899999999999999999888899999999999999988
Q ss_pred CccCCccccCCCCCCEEeccCCCCccc-chhhhcCCCCCEEeccCC
Q 038398 553 LWKLPSGISTLVSLEHLDLSSTAITHL-PIELQKLVNLKCLNLEYM 597 (720)
Q Consensus 553 ~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~ 597 (720)
.+..|..+.++++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 777777899999999999999999976 667999999999999995
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.9e-11 Score=134.35 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=90.3
Q ss_pred ceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCC
Q 038398 495 NVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSST 574 (720)
Q Consensus 495 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~ 574 (720)
.++.|++++|.+..+|.+..+++|+.|++++|.++.+|.. |.++++|++|+|++|.+. .+| .++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCC
Confidence 4778888888888887777788888888888888777654 788888888888888554 467 7888888888888888
Q ss_pred CCccc--chhhhcCCCCCEEeccCCcCCCCCchh---hhhccccCceee
Q 038398 575 AITHL--PIELQKLVNLKCLNLEYMNNLNQFPRL---VISAFSKLQVLR 618 (720)
Q Consensus 575 ~i~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~~---~~~~l~~L~~L~ 618 (720)
.++.+ |..++.+++|+.|++++| .+..+|+. .+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 88877 777888888888888874 45555532 234466666664
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.2e-10 Score=109.07 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=100.0
Q ss_pred EEcCCCCccCcccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc
Q 038398 478 VHAGLGLTEAPEIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK 555 (720)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 555 (720)
...+.+...+|. ...++++.|++++|.+..++. +..+++|++|++++|.++.+++..|.++++|++|+|++|.+.+.
T Consensus 13 ~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 91 (177)
T 2o6r_A 13 RCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91 (177)
T ss_dssp ECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence 334444445542 334789999999999988765 47889999999999999999988889999999999999976655
Q ss_pred CCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCc
Q 038398 556 LPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMN 598 (720)
Q Consensus 556 lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 598 (720)
.+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 555678999999999999999999876 5789999999999953
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=3.5e-11 Score=135.80 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=74.8
Q ss_pred cccceeEEEecccccccCCC------CCCCCcccEEEccCCCCcCcc----hHHhccCCcccEEEccCCCCCccCCcccc
Q 038398 492 NWRNVRRMSLMKNKIENLSE------TPTCPHLLSLFLSDNSLKMST----DDFFQSMPSLRVFNMSNNHLLWKLPSGIS 561 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 561 (720)
.+++|++|++++|.+.+... ...+++|++|++++|.+..+. +..+.++++|++|++++|.. ..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHh
Confidence 55677777777776543211 134677777777777665222 23355677777777777743 34666677
Q ss_pred CCCCCCEEeccCCCC----cccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccC
Q 038398 562 TLVSLEHLDLSSTAI----THLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCG 623 (720)
Q Consensus 562 ~l~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~ 623 (720)
.+++|++|+++.+.. ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++.+|.
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYAL 304 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCc
Confidence 777777777764311 122333455555666655552 23344442 5566677777766654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.8e-10 Score=107.15 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=85.5
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|++.+..+..+..+++|++|+|++|.|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 57888888888887632 37899999999999888887788999999999999965543344468899999999999999
Q ss_pred cccchh-hhcCCCCCEEeccCCcCCCCCch
Q 038398 577 THLPIE-LQKLVNLKCLNLEYMNNLNQFPR 605 (720)
Q Consensus 577 ~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 605 (720)
+.+|.. +..+++|++|++++ |.+...+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~-N~~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYN-NPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCS-SCBCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCC-CCcccccc
Confidence 988876 88899999999988 44554443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.5e-10 Score=105.86 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=83.1
Q ss_pred eeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 496 VRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 496 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
.+.+++++|.+..+|... .++|++|++++|.++.+++..|.++++|++|+|++|++.+..|..+..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 457888888888877533 3788999999999988888778899999999999996664445557889999999999999
Q ss_pred Ccccchh-hhcCCCCCEEeccCC
Q 038398 576 ITHLPIE-LQKLVNLKCLNLEYM 597 (720)
Q Consensus 576 i~~lp~~-i~~l~~L~~L~l~~~ 597 (720)
|+.+|.. +.++++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 9988765 888999999999884
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=3e-10 Score=117.53 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=115.1
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-CEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-DVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
+.++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... ...+ ..+++++.+...+...+ +.++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 56899999999999999876655599999999999999999998751 1111 12344443332222222 11111111
Q ss_pred CCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChhH-hhh-hccCcee
Q 038398 205 FFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLEI-CGA-LKAHEFL 279 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v-~~~-~~~~~~~ 279 (720)
... ..+ .+++.++|+||++.. .....+...+.....++.+|+||+...- ... ......+
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 000 001 346889999999763 2233333223233456788888765432 111 1223478
Q ss_pred eccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 280 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
++.+++.++..+++...+...... --.+....|++.++|.|. |+..+....
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999876532211 124667889999999995 555555443
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.10 E-value=1.2e-10 Score=131.35 Aligned_cols=220 Identities=17% Similarity=0.148 Sum_probs=133.3
Q ss_pred ccccceeEEEecccccccCC-----C-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCC---ccCCcccc
Q 038398 491 QNWRNVRRMSLMKNKIENLS-----E-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLL---WKLPSGIS 561 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~~~-----~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~---~~lp~~i~ 561 (720)
..+++|+.|++++|.+..+. . ...+++|++|++++|.+..++ ..+.++++|+.|+++++... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 45678999999999886332 1 246899999999999887766 45889999999999854322 23455667
Q ss_pred CCCCCCEEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCc-hhhhhccccCceeeccccCC-----------Ccccc
Q 038398 562 TLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFP-RLVISAFSKLQVLRMFDCGG-----------SKIER 629 (720)
Q Consensus 562 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~l~~L~~L~~~~~~~-----------~~l~~ 629 (720)
.+++|+.|+++++....+|..+..+++|++|++++|. +.... ...+..+++|+.|.+.++-. ..+..
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 7778888888777666777777777888888887764 22111 11246677777776652110 01111
Q ss_pred hhccc----------ccCCccc-cHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhcccccccc---ccCCCccccc
Q 038398 630 LKINV----------LFGGHQF-LVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRC---FNDSKSLDIF 695 (720)
Q Consensus 630 l~~~~----------~~~~~~~-~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~---~~~l~~l~~~ 695 (720)
+.... ....+.. .......+++|+.|.+..+.++.. .+......+++|+.|+++. |+.++..|..
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 11110 0111111 112234467777777766655432 1222223345788888863 4556554321
Q ss_pred -----cccccCCcceeeecCCCC
Q 038398 696 -----CLAGLRNLNKLYVAGCKH 713 (720)
Q Consensus 696 -----~l~~l~~L~~L~l~~c~~ 713 (720)
.+.++++|+.|+|+.|..
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHHHHhCCCCCEEEEecCCC
Confidence 255688888888877653
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=1.1e-10 Score=133.93 Aligned_cols=118 Identities=25% Similarity=0.329 Sum_probs=88.9
Q ss_pred ccccccceeEEEecccccccCCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
.+..+.+|+.|+|++|.+..++. ...+++|++|+|++|.++.+|.. |.+|++|++|+|++|.+. .+|..|+.|++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 45667788888888888877654 35778888888888888877655 788888888888888554 7788888888888
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEeccCCcCCCCCchhhhh
Q 038398 568 HLDLSSTAITHLPIELQKLVNLKCLNLEYMNNLNQFPRLVIS 609 (720)
Q Consensus 568 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~ 609 (720)
+|+|++|.|+.+|..|++|++|++|+|++| .+...+...+.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~ 337 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILT 337 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHh
Confidence 888888888888888888888888888884 44544333333
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=2.7e-10 Score=126.54 Aligned_cols=121 Identities=21% Similarity=0.307 Sum_probs=97.1
Q ss_pred eEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCC
Q 038398 497 RRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI 576 (720)
Q Consensus 497 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i 576 (720)
+.+.+.+|.+..++. ..|+.|++++|.++.+|. |.++++|++|+|++|.+. .+|..++++++|++|+|++|.+
T Consensus 426 ~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 334444555554433 248999999999998875 899999999999999555 8999999999999999999999
Q ss_pred cccchhhhcCCCCCEEeccCCcCCCCC--chhhhhccccCceeeccccCCCcccch
Q 038398 577 THLPIELQKLVNLKCLNLEYMNNLNQF--PRLVISAFSKLQVLRMFDCGGSKIERL 630 (720)
Q Consensus 577 ~~lp~~i~~l~~L~~L~l~~~~~l~~l--p~~~~~~l~~L~~L~~~~~~~~~l~~l 630 (720)
+.+| .++++++|+.|+|++ +.+..+ |. .++.+++|+.|++.+ |.+..+
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~-~l~~l~~L~~L~L~~---N~l~~~ 548 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCN-NRLQQSAAIQ-PLVSCPRLVLLNLQG---NSLCQE 548 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCS-SCCCSSSTTG-GGGGCTTCCEEECTT---SGGGGS
T ss_pred CCCc-ccCCCCCCcEEECCC-CCCCCCCCcH-HHhcCCCCCEEEecC---CcCCCC
Confidence 9998 899999999999998 567777 55 378888888887765 555433
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.03 E-value=5.7e-09 Score=107.87 Aligned_cols=269 Identities=17% Similarity=0.108 Sum_probs=141.3
Q ss_pred CCCCcCchHHHHHHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 199 (720)
.+.++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ... .++++.+.......+.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHH---
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHH---
Confidence 36789999999988887742 234678899999999999999999876 222 2344433222222211
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhc---cCcEEEEEecccccc--ccccccccCC--------C----------CCC
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILG---KKKFLLLLDDIWERV--DLTKVGIPFP--------D----------PEN 256 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~~~--------~----------~~~ 256 (720)
..+. .+..+|+|||++... ....+...+. . ...
T Consensus 82 ------------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 82 ------------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ------------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ------------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1221 245688888886532 1111100000 0 012
Q ss_pred CcEEEEEcCChh-Hhhhh-c-cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Q 038398 257 KSKIVFTTHFLE-ICGAL-K-AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRAM 333 (720)
Q Consensus 257 gs~iiiTtR~~~-v~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 333 (720)
+..+|.||.... +.... . ....+.+.+++.+|..+++...+..... .--.+....+++.++|.|-.+..+...+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 345666665432 21111 1 1257899999999999999888754331 1225678899999999998887766554
Q ss_pred hcC--------CChhHHHHHHHHHhcccCCCCCCCccchhhHHhhcCCCCCcchhHHHHhhcCCCCCcccChHHHHH---
Q 038398 334 ACK--------KTPQEWHYAIQVLRRSASEFPGMGKEVYPLLKFSYDSLPDDTIRSYLLYCGLFPEDYRIRKSELID--- 402 (720)
Q Consensus 334 ~~~--------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~~~~fp~~~~i~~~~li~--- 402 (720)
... -+.+....++..+......+...+..+...+...|..-+. ....+-..+++ ++..+.+
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi-------~~~tl~~~l~ 286 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALSE-------DPGTLEEVHE 286 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTS-------CHHHHHHHTH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCC-------CHHHHHHHHh
Confidence 321 1333344444333211111111111222222222222222 23333333333 2222222
Q ss_pred -HHHhhCCCCccc-chhhHHhHHHHHH-HHHHhccccc
Q 038398 403 -CWIGEGFLDQYD-RSGAYNEGYYIIG-ILLHACLLEE 437 (720)
Q Consensus 403 -~Wiaeg~~~~~~-~~~~~~~~~~~~~-~L~~~sll~~ 437 (720)
+-+..|++.... +....+.|..|++ ++.+|+|+|+
T Consensus 287 ~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 287 PYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 234567776543 5556678888887 7888888774
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=9.4e-10 Score=102.32 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=86.4
Q ss_pred ccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccC
Q 038398 518 LLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEY 596 (720)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~ 596 (720)
-+.+++++|.++.+|... .++|++|+|++|.+.+..|..|+++++|++|+|++|+|+.+|.. |.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999998888753 38899999999987766788899999999999999999999876 58999999999998
Q ss_pred CcCCCCCchhhhhccccCceeeccc
Q 038398 597 MNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 597 ~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
+.+..+|...+..+++|+.|++.+
T Consensus 91 -N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 91 -NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp -SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred -CccceeCHHHhccccCCCEEEeCC
Confidence 678888886678888888887765
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.1e-09 Score=101.47 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=86.5
Q ss_pred cccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEecc
Q 038398 517 HLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLE 595 (720)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~ 595 (720)
..+.+++++|.++.+|... .++|++|+|++|.+.+..|..|.++++|++|+|++|+|+.+|.. |.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999999988653 37899999999977766688899999999999999999999876 6899999999999
Q ss_pred CCcCCCCCchhhhhccccCceeeccc
Q 038398 596 YMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 596 ~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
+ +.+..+|...+..+++|+.|++.+
T Consensus 87 ~-N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 D-NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred C-CccCEeCHHHhcCCCCCCEEEeCC
Confidence 9 578888876678888888887765
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=3.9e-11 Score=114.54 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=92.3
Q ss_pred ccEEEccCC--CCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchhhhcCCCCCEEecc
Q 038398 518 LLSLFLSDN--SLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIELQKLVNLKCLNLE 595 (720)
Q Consensus 518 L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 595 (720)
|+.+.+.++ .++.++. .+..+++|++|+|++|.+. .+| .+..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 444444443 4445554 4788888999999888544 477 7888889999999988888888878888889999998
Q ss_pred CCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhH
Q 038398 596 YMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQAL 665 (720)
Q Consensus 596 ~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l 665 (720)
+ +.+..+|. ++.+++|+.|++.++ .+..++ .+..+..+++|+.|.++.|.+...
T Consensus 102 ~-N~l~~l~~--~~~l~~L~~L~l~~N---~i~~~~----------~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 102 Y-NQIASLSG--IEKLVNLRVLYMSNN---KITNWG----------EIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp E-EECCCHHH--HHHHHHSSEEEESEE---ECCCHH----------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred C-CcCCcCCc--cccCCCCCEEECCCC---cCCchh----------HHHHHhcCCCCCEEEecCCccccc
Confidence 8 46677774 778888888887764 332211 123577788888888887776543
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=7.5e-10 Score=114.78 Aligned_cols=194 Identities=14% Similarity=0.191 Sum_probs=120.6
Q ss_pred ccceeEEEecccccc--------------------cCCC--CCC--------CCcccEEEccCCCCcCcchHHhccCCcc
Q 038398 493 WRNVRRMSLMKNKIE--------------------NLSE--TPT--------CPHLLSLFLSDNSLKMSTDDFFQSMPSL 542 (720)
Q Consensus 493 ~~~l~~L~l~~~~~~--------------------~~~~--~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L 542 (720)
+++|+.|+|++|.+. .++. +.+ |++|+.|.+.. .++.++...|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 567888888888776 1121 234 77788888877 6777777777888888
Q ss_pred cEEEccCCCCCccCCccccCCCCCCEEeccCCCC---------------------------cccchhh------------
Q 038398 543 RVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAI---------------------------THLPIEL------------ 583 (720)
Q Consensus 543 ~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i---------------------------~~lp~~i------------ 583 (720)
+.|++++|.....-+..|.++.++.++.+..+.. ..+|..+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888887755444455566665555555443100 0111100
Q ss_pred ----------------hcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhc
Q 038398 584 ----------------QKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM 647 (720)
Q Consensus 584 ----------------~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 647 (720)
..+++|+.+++++ +.+..+|...+..+++|+.|.+.+ | +..++... +.
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~---n-i~~I~~~a-----------F~ 270 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPH---N-LKTIGQRV-----------FS 270 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCT---T-CCEECTTT-----------TT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCc---c-cceehHHH-----------hh
Confidence 1267888888876 457778877777787887777654 2 44444332 44
Q ss_pred CCCCCc-eeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcceee
Q 038398 648 GMKHLM-VLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLY 707 (720)
Q Consensus 648 ~l~~L~-~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~ 707 (720)
++++|+ .+.+.. .+..+. ...+..+++|+.+++.+ +.+..++...|.++++|+.|+
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIE--FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCEEEEECT-TCCEEC--TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CChhccEEEEEcc-cceEEc--hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 566777 777654 332221 13445566788888765 667788777788888888775
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=1.5e-11 Score=117.53 Aligned_cols=104 Identities=27% Similarity=0.289 Sum_probs=55.5
Q ss_pred cccccceeEEEecccccccCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEE
Q 038398 490 IQNWRNVRRMSLMKNKIENLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHL 569 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 569 (720)
+..+++|+.|++++|.+..++.+..+++|++|++++|.++.++.. +..+++|++|++++|.+. .+| .++.+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIA-SLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEE
Confidence 444555555666555555555444455555555555555544432 444555555555555332 334 45555555555
Q ss_pred eccCCCCcccch--hhhcCCCCCEEeccC
Q 038398 570 DLSSTAITHLPI--ELQKLVNLKCLNLEY 596 (720)
Q Consensus 570 ~L~~~~i~~lp~--~i~~l~~L~~L~l~~ 596 (720)
++++|.++.+|. .+..+++|++|++++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 555555555443 455555555555555
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.95 E-value=5.9e-10 Score=125.76 Aligned_cols=215 Identities=15% Similarity=0.153 Sum_probs=125.4
Q ss_pred cccceeEEEecccccccC--CCC-CCCCcccEEEccCC-CCcCc-chHHhccCCcccEEEccCCCCCccC----CccccC
Q 038398 492 NWRNVRRMSLMKNKIENL--SET-PTCPHLLSLFLSDN-SLKMS-TDDFFQSMPSLRVFNMSNNHLLWKL----PSGIST 562 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~~--~~~-~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~l----p~~i~~ 562 (720)
.+++|++|++++|.+... ..+ ..+++|++|++++| .++.. .+..+.++++|++|+|++|.+.+.. +.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 567899999998876432 112 25789999999998 44432 2344568999999999998644332 333346
Q ss_pred CCCCCEEeccCCC--Cc--ccchhhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeeccccCCC----cccchhcc-
Q 038398 563 LVSLEHLDLSSTA--IT--HLPIELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMFDCGGS----KIERLKIN- 633 (720)
Q Consensus 563 l~~L~~L~L~~~~--i~--~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~~~~~----~l~~l~~~- 633 (720)
+++|++|++++|. +. .++.-+.++++|++|++++|..+..+|.. +..+++|+.|.+..+... .+..++..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 7799999999886 32 23333556799999999998666666653 788899999987655421 01110000
Q ss_pred ----------cccCC-ccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccc-cccC
Q 038398 634 ----------VLFGG-HQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCL-AGLR 701 (720)
Q Consensus 634 ----------~~~~~-~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l-~~l~ 701 (720)
.+... .......+..+++|+.|+++.+.+.. ..+......+++|+.|++.+| +....+..+ ..++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCC
Confidence 00000 01111122245666666666555332 222222334456777777664 222111222 3467
Q ss_pred CcceeeecC
Q 038398 702 NLNKLYVAG 710 (720)
Q Consensus 702 ~L~~L~l~~ 710 (720)
+|+.|+|.+
T Consensus 339 ~L~~L~L~~ 347 (594)
T 2p1m_B 339 DLRELRVFP 347 (594)
T ss_dssp TCCEEEEEC
T ss_pred CCCEEEEec
Confidence 777777743
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.8e-09 Score=111.74 Aligned_cols=186 Identities=16% Similarity=0.129 Sum_probs=112.4
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-CEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-DVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.++++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+.......+...+....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFA 101 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHHHHHHHHH
Confidence 367899999999999999776666699999999999999999998751 1111 1233333322111111111110000
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChhH-hhh-hccCcee
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLEI-CGA-LKAHEFL 279 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~v-~~~-~~~~~~~ 279 (720)
. .. ....+++.++|+||++.. .....+...+.....++++|+||....- ... ......+
T Consensus 102 ~-~~----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 102 R-TK----------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp H-SC----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred h-hC----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 0 00 011256889999999753 2233333222223456788888865432 111 1122478
Q ss_pred eccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 038398 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIGRA 332 (720)
Q Consensus 280 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 332 (720)
.+.+++.++...++...+...... --.+....|++.++|.|..+..+...
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999998876543211 12466788999999999865544433
No 155
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.93 E-value=9.1e-10 Score=124.21 Aligned_cols=82 Identities=22% Similarity=0.281 Sum_probs=52.2
Q ss_pred cccceeEEEeccccccc-----CCCC-CCCCcccEEEccCCCCcCcch----HHhccCCcccEEEccCCCCCccCCcccc
Q 038398 492 NWRNVRRMSLMKNKIEN-----LSET-PTCPHLLSLFLSDNSLKMSTD----DFFQSMPSLRVFNMSNNHLLWKLPSGIS 561 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~lp~~i~ 561 (720)
.+++|++|++++|.+.. ++.+ ..+++|++|++++|. ..+.. ..+.++++|++|++++|.....+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 56778888888777543 2222 366788888888775 22222 2234568888888887755455666677
Q ss_pred CCCCCCEEeccCC
Q 038398 562 TLVSLEHLDLSST 574 (720)
Q Consensus 562 ~l~~L~~L~L~~~ 574 (720)
.+++|++|+++.+
T Consensus 233 ~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 233 RAPQLEELGTGGY 245 (594)
T ss_dssp HCTTCSEEECSBC
T ss_pred cCCcceEcccccc
Confidence 7777777775443
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=4.2e-09 Score=110.09 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=82.1
Q ss_pred EEEeccc-ccccCCCCCCCCcccEEEccC-CCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCC
Q 038398 498 RMSLMKN-KIENLSETPTCPHLLSLFLSD-NSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTA 575 (720)
Q Consensus 498 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~ 575 (720)
.++++++ .+..+|.+..+++|+.|+|++ |.+..+++..|.+|++|++|+|++|++.+..|..|.+|++|++|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4577777 788888777788899999986 88888888878899999999999997777777788899999999999999
Q ss_pred CcccchhhhcCCCCCEEeccCC
Q 038398 576 ITHLPIELQKLVNLKCLNLEYM 597 (720)
Q Consensus 576 i~~lp~~i~~l~~L~~L~l~~~ 597 (720)
|+.+|..+.....|+.|+|.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 9988876444444999999884
No 157
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.85 E-value=8.2e-09 Score=87.54 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 038398 9 LTVLQAQLPKLIESKNDVMARVANAEQQQ-MRRLNTVQGWLSRVEAMETEVGELMKDGSQEVD 70 (720)
Q Consensus 9 ~~~l~~~l~~l~~~l~~i~~~v~~ae~~~-~~~~~~~~~wl~~~~~~~~~~~d~ld~~~~~~~ 70 (720)
+..++++++.|+..+..|++++.+|+.+. ...+++++.|+++||+++||+||++|+|.++..
T Consensus 21 ~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777788888888888888888873 234588999999999999999999999988764
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.81 E-value=2.8e-08 Score=102.36 Aligned_cols=179 Identities=11% Similarity=0.138 Sum_probs=111.1
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
++++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh------------
Confidence 56899999999999999776655699999999999999999998751 11111 2233333321110
Q ss_pred CCCCccCCCChhHHHHHHHHH--h-ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChh-Hhhh-hccCc
Q 038398 205 FFDESWKNGSLEDKTSDILRI--L-GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLE-ICGA-LKAHE 277 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~-v~~~-~~~~~ 277 (720)
....+........ + .+++.++|+|+++.. .....+...+.....++.+|+||.... +... .....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 1111111111110 1 256789999999753 223344433433445677888776543 2111 12235
Q ss_pred eeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 278 FLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 278 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
.+++.+++.++..+++...+...... --.+....+++.++|.+..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78999999999999998877543311 12556788889999988755433
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.5e-08 Score=99.69 Aligned_cols=169 Identities=11% Similarity=0.026 Sum_probs=103.4
Q ss_pred CcCchHHHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHHhhhcCCC--CCc-C-EEEEEEecCcCCHHHHHHHH
Q 038398 128 TVGLESTFDKVWRCLG----EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAP--NVF-D-VVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~v~~~~~~~~~~~~i 199 (720)
+.|||+++++|...|. .+....+.|+|++|+|||++|+.|++...... ... . .+++|++....+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 5799999999987774 35678899999999999999999998873111 111 1 45677777777888999999
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHh---ccCcEEEEEeccccccccccccccCCC-CCCCc--EEEEEcCChhH----
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRIL---GKKKFLLLLDDIWERVDLTKVGIPFPD-PENKS--KIVFTTHFLEI---- 269 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~-~~~gs--~iiiTtR~~~v---- 269 (720)
+.++..... ......+....+...+ .+++++++||+++...+-+.+...+.+ ...++ .||.++...+.
T Consensus 102 ~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 999954321 1122223333333333 356799999999764321111111110 01122 23333433211
Q ss_pred h-----hhhccCceeeccCCChhhHHHHHHHHhcc
Q 038398 270 C-----GALKAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 270 ~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
. ..+ ....+.+++++.+|-.+++..++..
T Consensus 180 L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 180 INIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 111 1246899999999999999988743
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.74 E-value=9.2e-08 Score=100.87 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=109.8
Q ss_pred CCCcCchHHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
++++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++... ....+. ...+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC-------CCCCcccHHHHHHhccCC
Confidence 568999999999999986654 45788999999999999999998762 111110 000000001111111000
Q ss_pred CCC---CccCCCChhHHHHHHHHHh-----ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChh-Hh-hh
Q 038398 205 FFD---ESWKNGSLEDKTSDILRIL-----GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLE-IC-GA 272 (720)
Q Consensus 205 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~-v~-~~ 272 (720)
... ........+ ....+.+.+ .+++.++|+||++.. .....+...+.....+..+|++|.... +. ..
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000 000001111 122233333 246789999999753 223333222222334566777765432 21 11
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
......+++.+++.++..+++...+...... --.+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1223678999999999999998876432211 124567889999999998776554
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.68 E-value=3.5e-08 Score=93.20 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=42.1
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...++||+++++++.+++.....+.+.|+|++|+|||++|+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999987666788999999999999999998875
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.67 E-value=4.7e-08 Score=96.08 Aligned_cols=172 Identities=10% Similarity=0.052 Sum_probs=102.4
Q ss_pred CCCcCc---hHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 126 EPTVGL---ESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 126 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
++++|. +..++.+..+......+.+.|+|++|+||||+|+.+++... .....++|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~---------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI---------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS----------
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH----------
Confidence 567763 35566666666555667899999999999999999998762 12234567665432110
Q ss_pred hCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----cccccccCCC-CCCC-cEEEEEcCChh--------
Q 038398 203 IGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----LTKVGIPFPD-PENK-SKIVFTTHFLE-------- 268 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~iiiTtR~~~-------- 268 (720)
+ .+.. +.+ .++.+||+||++.... ...+...+.. ...+ .++|+||+...
T Consensus 95 ~------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 95 S------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp C------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 0000 011 3467899999975321 1112111110 0112 24777776322
Q ss_pred -HhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 269 -ICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 269 -v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
+...+.....+++++++.++..+++...+..... .--.+....+++.++|.+-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1222222367899999999999999988753321 1235677889999999887665443
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=5.2e-08 Score=101.66 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=82.5
Q ss_pred cEEEccCC-CCcCcchHHhccCCcccEEEccC-CCCCccCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEecc
Q 038398 519 LSLFLSDN-SLKMSTDDFFQSMPSLRVFNMSN-NHLLWKLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLE 595 (720)
Q Consensus 519 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~ 595 (720)
..++++++ .++.+|. +..+++|++|+|++ |.+.+..|..|++|++|++|+|++|.|+.+|+ .|.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8988887 89999999999997 86655555789999999999999999998865 58999999999999
Q ss_pred CCcCCCCCchhhhhccccCceeeccc
Q 038398 596 YMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 596 ~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
+ |.+..+|...+..++ |+.|.+.+
T Consensus 89 ~-N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 89 F-NALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp S-SCCSCCCSTTTCSCC-CCEEECCS
T ss_pred C-CccceeCHHHcccCC-ceEEEeeC
Confidence 9 678889876555555 77777664
No 164
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=1.1e-08 Score=105.80 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=119.8
Q ss_pred cccceeEEEeccccc-ccCCCCCC-CCcccEEEccCCCCc--------------------CcchHHhcc--------CCc
Q 038398 492 NWRNVRRMSLMKNKI-ENLSETPT-CPHLLSLFLSDNSLK--------------------MSTDDFFQS--------MPS 541 (720)
Q Consensus 492 ~~~~l~~L~l~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~ 541 (720)
.+.+++.|.+.++-- ..+..+.. +++|++|+|++|.+. .++...|.+ +++
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 456788888886521 11111222 789999999999877 455566777 888
Q ss_pred ccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCc---CCCCCchhhhh--------
Q 038398 542 LRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMN---NLNQFPRLVIS-------- 609 (720)
Q Consensus 542 L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~---~l~~lp~~~~~-------- 609 (720)
|+.|+|.+ .+...-+..|.++.+|+.|+++.|.+..++.. |..+.++..+.+.... ....+....+.
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 88888888 35544456788888888888888887777544 6666666655543310 00111110011
Q ss_pred ------------------------------------------ccccCceeeccccCCCcccchhcccccCCccccHHHhc
Q 038398 610 ------------------------------------------AFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELM 647 (720)
Q Consensus 610 ------------------------------------------~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 647 (720)
.+++|+.|++.+ |.+..++.. .+.
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~---n~i~~I~~~-----------aF~ 247 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK---TNATTIPDF-----------TFA 247 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT---BCCCEECTT-----------TTT
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC---CCcceecHh-----------hhh
Confidence 134444444432 333333332 244
Q ss_pred CCCCCceeEEEecchhhHHHHhhhhhhhhhcc-ccccccccCCCccccccccccCCcceeeecCC
Q 038398 648 GMKHLMVLTITLKSWQALKELLISQELQRSTQ-SLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGC 711 (720)
Q Consensus 648 ~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~-~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c 711 (720)
++++|+.+.+..+ +..++ ...+..+++|+ .+.+.+ .++.++...|.++++|+.|+++++
T Consensus 248 ~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred CCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 5677777776643 32222 12345556777 888775 577777778888888888888543
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=106.60 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=83.2
Q ss_pred cceeEEEecccccccCCC------C-CCCCcccEEEccCCCCcCcch-HHhccCCcccEEEccCCCCCccCCccc-----
Q 038398 494 RNVRRMSLMKNKIENLSE------T-PTCPHLLSLFLSDNSLKMSTD-DFFQSMPSLRVFNMSNNHLLWKLPSGI----- 560 (720)
Q Consensus 494 ~~l~~L~l~~~~~~~~~~------~-~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~lp~~i----- 560 (720)
+.++.|++++|.+..... + ..+++|+.|++++|.++.... .....+++|++|+|++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 356677777776643211 0 233577777777776644322 222345567777777775443322222
Q ss_pred cCCCCCCEEeccCCCCcc-----cchhhhcCCCCCEEeccCCcCCCCCc----hhhhhccccCceeeccccCCCcccchh
Q 038398 561 STLVSLEHLDLSSTAITH-----LPIELQKLVNLKCLNLEYMNNLNQFP----RLVISAFSKLQVLRMFDCGGSKIERLK 631 (720)
Q Consensus 561 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~lp----~~~~~~l~~L~~L~~~~~~~~~l~~l~ 631 (720)
...++|++|+|++|.|+. ++..+..+++|++|+|++| .+.... ...+...++|+.|++.+| .+....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N---~i~~~g 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN---GAGDTA 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS---CCCHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC---CCCHHH
Confidence 234667777777777653 4445566777777777774 222211 011344455666655543 332111
Q ss_pred cccccCCccccHHHhcCCCCCceeEEEecchh
Q 038398 632 INVLFGGHQFLVEELMGMKHLMVLTITLKSWQ 663 (720)
Q Consensus 632 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~ 663 (720)
...+...+..++.|+.|++++|.+.
T Consensus 228 -------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 -------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp -------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred -------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 0112334445666777777666654
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.59 E-value=2.3e-07 Score=93.74 Aligned_cols=176 Identities=21% Similarity=0.212 Sum_probs=102.0
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
++++|.+..++++.+.+.. .....+.|+|++|+|||+||+.+++.. ... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHH--
Confidence 5689999999999887632 345679999999999999999999886 222 2233322110
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHH-HHhccCcEEEEEecccccc----------------ccccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDIL-RILGKKKFLLLLDDIWERV----------------DLTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~ 253 (720)
.. ...........+. ......+.+|+|||++... .+..+...+. .
T Consensus 89 ------------~~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 ------------KK----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ------------CC----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ------------Hh----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 00 0111112222222 2233467899999996421 0111111111 1
Q ss_pred CCCCcEEEEEcCChhHhh-----hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC-cchHHH
Q 038398 254 PENKSKIVFTTHFLEICG-----ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG-LPLALI 327 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~ 327 (720)
...+..||.||....... .......+.++.++.++..+++...+.......... ...+++.+.| .|-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 223566777876543321 111224688999999999999998876543222222 4567777777 454554
Q ss_pred HH
Q 038398 328 TI 329 (720)
Q Consensus 328 ~~ 329 (720)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=2.6e-07 Score=96.60 Aligned_cols=194 Identities=12% Similarity=0.158 Sum_probs=110.0
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc-CEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF-DVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
...++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++... ....+ ..++.+..+.......+...+....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY-GPDLMKSRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH-HHHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC-CCcccccceEEEccccccchHHHHHHHHHHh
Confidence 367899999999999999876555589999999999999999988751 00011 1233344333333332222111111
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCcEEEEEcCChh-Hhhh-hccCcee
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKSKIVFTTHFLE-ICGA-LKAHEFL 279 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~iiiTtR~~~-v~~~-~~~~~~~ 279 (720)
..... .. ... .....-.+++-++++|+++... ....+...+.......++|++|.... +... ......+
T Consensus 115 ~~~~~--~~--~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 115 RLTVS--KP--SKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HSCCC--CC--CTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhccc--cc--chh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 00000 00 000 0001112355799999986532 22222222222233566777765432 2111 1122478
Q ss_pred eccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 280 KVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 280 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
.+.+++.++....+...+...... --.+....|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999998876543211 22567889999999998764433
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.54 E-value=1.4e-06 Score=93.14 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=104.5
Q ss_pred CCCCCcCchHHH---HHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHH
Q 038398 124 PCEPTVGLESTF---DKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKI 199 (720)
Q Consensus 124 ~~~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i 199 (720)
..+++||.+..+ ..+...+..+....+.|+|++|+||||+|+.+++.. ...| +.++.. .....+ +.+
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REA 94 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHH
Confidence 346789999988 778888877777889999999999999999999886 2222 222221 122211 111
Q ss_pred HHHhCCCCCccCCCChhHHHHHHH-HHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEE-EcCChhH---hhh
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDIL-RILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVF-TTHFLEI---CGA 272 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iii-TtR~~~v---~~~ 272 (720)
+ .... ....+++.+|+||+++.. ...+.+...+.. + ...+|. ||.+... ...
T Consensus 95 ~-------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 95 I-------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp H-------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHH
T ss_pred H-------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHH
Confidence 1 1111 112457889999999753 233333322222 1 233333 5555431 111
Q ss_pred hccCceeeccCCChhhHHHHHHHHhccCcc----CCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 273 LKAHEFLKVECLGPEDAWRLFRENLRRDVL----DNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 273 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
......+.+++++.++...++.+.+..... ....--.+....|++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 222357889999999999999888754210 011123567788888899877654433
No 169
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.54 E-value=2.8e-07 Score=97.64 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=96.0
Q ss_pred ccccccceeEEEecccccccCCCC-CCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSET-PTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
.|.++.+|+.+.+..|.+..++.. ..+.+|+.+.+..+ ++.+....|.++++|+.++|..+ ....-...|.+ .+|+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 345555666666666555554432 23456666666533 55555555666666666666554 32222333444 5566
Q ss_pred EEeccCCCCcccc-hhhhcCCCCCEEeccCCcC----CCCCchhhhhccccCceeeccccCCCcccchhcccccCCcccc
Q 038398 568 HLDLSSTAITHLP-IELQKLVNLKCLNLEYMNN----LNQFPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFL 642 (720)
Q Consensus 568 ~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~----l~~lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~ 642 (720)
.+.+. +.++.++ ..|.++++|+.+++.++.. ...++...+..+++|+.+.+.+ .+..++...
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~----~i~~I~~~a-------- 318 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE----SIRILGQGL-------- 318 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT----TCCEECTTT--------
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC----ceEEEhhhh--------
Confidence 66663 3355553 2356666666666655211 1135555555566666555541 232222222
Q ss_pred HHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccC-CcceeeecC
Q 038398 643 VEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLR-NLNKLYVAG 710 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~-~L~~L~l~~ 710 (720)
+.+|++|+.+.+.. .+..+. ...+..+ +|+.+.+.+ +.+..++...|.+++ +++.|++-.
T Consensus 319 ---F~~c~~L~~l~lp~-~l~~I~--~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 319 ---LGGNRKVTQLTIPA-NVTQIN--FSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ---TTTCCSCCEEEECT-TCCEEC--TTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ---hcCCCCccEEEECc-cccEEc--HHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 33455566665532 122111 1123333 566666665 334444444455553 555555543
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=8.3e-07 Score=97.42 Aligned_cols=190 Identities=12% Similarity=0.063 Sum_probs=109.5
Q ss_pred CCCcCchHHHHHHHHHhcC-----------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 126 EPTVGLESTFDKVWRCLGE-----------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
.+++|++..++++..++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 5689999999999999864 134789999999999999999999886 1 1 244555554
Q ss_pred cCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH--HhccCcEEEEEeccccccc-----cccccccCCCCCCCcEEE
Q 038398 189 DLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR--ILGKKKFLLLLDDIWERVD-----LTKVGIPFPDPENKSKIV 261 (720)
Q Consensus 189 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~ii 261 (720)
...... ....+....... ..........+ ...+++.+|++|+++.... +..+...+.. .+..||
T Consensus 113 ~~~~~~-~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 113 VRSKTL-LNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCCHHH-HHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred cchHHH-HHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 444332 222222211100 00000000000 1135788999999975321 1222111111 233455
Q ss_pred EEcCChh---HhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC-cchHHHHHHHHH
Q 038398 262 FTTHFLE---ICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG-LPLALITIGRAM 333 (720)
Q Consensus 262 iTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~l 333 (720)
+++.... +.........+.+++++.++..+++...+.......+ .+....|++.++| ++.++..+..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLSTIS 256 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHTHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5544322 2222222356899999999999999887654332222 2457788999998 566677665443
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=4.1e-07 Score=96.39 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=21.7
Q ss_pred hhhhhccccccccccCCCccccccccccCCcceeeecCCC
Q 038398 673 ELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCK 712 (720)
Q Consensus 673 ~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~ 712 (720)
..+++|+.+.|. ++++.++...|.++ +|+.|++.++.
T Consensus 320 ~~c~~L~~l~lp--~~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 320 GGNRKVTQLTIP--ANVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTCCSCCEEEEC--TTCCEECTTSSSSS-CCCEEEECCSS
T ss_pred cCCCCccEEEEC--ccccEEcHHhCCCC-CCCEEEEcCCC
Confidence 334456666664 23556655566666 67777776653
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=3.6e-08 Score=103.49 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=112.3
Q ss_pred CCcccEEEccCCCCcCcchHHhcc-----CCcccEEEccCCCCCccCCccc-cCCCCCCEEeccCCCCcccc-----hhh
Q 038398 515 CPHLLSLFLSDNSLKMSTDDFFQS-----MPSLRVFNMSNNHLLWKLPSGI-STLVSLEHLDLSSTAITHLP-----IEL 583 (720)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~L~~~~~~~~lp~~i-~~l~~L~~L~L~~~~i~~lp-----~~i 583 (720)
.++|+.|++++|.++......+.. .++|++|+|++|.+...-...+ ..+.+|++|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999887655443333 3799999999996654322233 34678999999999987432 222
Q ss_pred -hcCCCCCEEeccCCcCCCC-----CchhhhhccccCceeeccccCCCcccchhcccccCCccccHHHhcCCCCCceeEE
Q 038398 584 -QKLVNLKCLNLEYMNNLNQ-----FPRLVISAFSKLQVLRMFDCGGSKIERLKINVLFGGHQFLVEELMGMKHLMVLTI 657 (720)
Q Consensus 584 -~~l~~L~~L~l~~~~~l~~-----lp~~~~~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~ 657 (720)
...++|++|+|++| .+.. ++. .+..+++|++|++.+ |.+.... ...+...+..+++|+.|++
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~-~L~~~~~L~~L~Ls~---N~l~~~g-------~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLME-GLAGNTSVTHLSLLH---TGLGDEG-------LELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHH-HHHTCSSCCEEECTT---SSCHHHH-------HHHHHHHGGGCSCCCEEEC
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHH-HHhcCCCcCEEeCCC---CCCCcHH-------HHHHHHHHhcCCCcCeEEC
Confidence 24688999999996 3332 222 135567777777665 4443221 1123455677889999999
Q ss_pred EecchhhHH--HHhhhhhhhhhccccccccccCCCccccccccc
Q 038398 658 TLKSWQALK--ELLISQELQRSTQSLFLRCFNDSKSLDIFCLAG 699 (720)
Q Consensus 658 ~~~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~ 699 (720)
+.|.+.... .+.......++|+.|+|++| .++......+..
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 998876533 34444445568999999984 455554444433
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.47 E-value=6.9e-06 Score=82.13 Aligned_cols=192 Identities=16% Similarity=0.090 Sum_probs=106.1
Q ss_pred CCCcCchHHHHHHHH-------Hhc---CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHH
Q 038398 126 EPTVGLESTFDKVWR-------CLG---EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKI 195 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 195 (720)
..++|....++++.. .+. ......+.|+|++|+|||++|+.+++.. ...| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 467888887776665 232 3456789999999999999999999876 2222 22222210
Q ss_pred HHHHHHHhCCCCCccCCCChhH----HHHHHHHHhccCcEEEEEecccccc------------ccccccccCC---CCCC
Q 038398 196 QEKIGRRIGFFDESWKNGSLED----KTSDILRILGKKKFLLLLDDIWERV------------DLTKVGIPFP---DPEN 256 (720)
Q Consensus 196 ~~~i~~~l~~~~~~~~~~~~~~----~~~~l~~~l~~k~~LlVlDdv~~~~------------~~~~l~~~~~---~~~~ 256 (720)
+ ....... ....+......+..+|+|||++... .+..+...+. ....
T Consensus 101 -------~-------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 166 (272)
T 1d2n_A 101 -------M-------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGR 166 (272)
T ss_dssp -------C-------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTC
T ss_pred -------h-------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCC
Confidence 0 0011111 1122222334568899999986530 0111111111 1223
Q ss_pred CcEEEEEcCChhHhhh---hcc-CceeeccCCCh-hhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC------cchH
Q 038398 257 KSKIVFTTHFLEICGA---LKA-HEFLKVECLGP-EDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG------LPLA 325 (720)
Q Consensus 257 gs~iiiTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G------lPLa 325 (720)
...||.||........ ... ...+.+++++. ++...++.... . --.+....|++.+.| ++-+
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-----~---~~~~~~~~l~~~~~g~~~~g~ir~l 238 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-----N---FKDKERTTIAQQVKGKKVWIGIKKL 238 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-----C---SCHHHHHHHHHHHTTSEEEECHHHH
T ss_pred CEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-----C---CCHHHHHHHHHHhcCCCccccHHHH
Confidence 3446667776644332 111 35678888988 66666665431 1 114567888888888 3444
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhcc
Q 038398 326 LITIGRAMACKKTPQEWHYAIQVLRRS 352 (720)
Q Consensus 326 i~~~~~~l~~~~~~~~w~~~l~~l~~~ 352 (720)
+..+-.+. .......+..+++.+...
T Consensus 239 ~~~l~~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 239 LMLIEMSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHT-TSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHh-hhchHHHHHHHHHHHHHc
Confidence 44444332 224556677777766554
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.46 E-value=1.3e-05 Score=83.01 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=100.5
Q ss_pred CCCcCchHHHHHHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
++++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.++.+.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-----
Confidence 5789999999999888853 344678999999999999999998876 2222 22332221111111
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccC------------------CCCCCCcEE
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPF------------------PDPENKSKI 260 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~------------------~~~~~gs~i 260 (720)
...+.. ..+..+|+||+++... ....+...+ ....++..+
T Consensus 98 ------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 98 ------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111 2356788889887531 111110000 001113456
Q ss_pred EEEcCChhH-hhh-h-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 038398 261 VFTTHFLEI-CGA-L-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITIG 330 (720)
Q Consensus 261 iiTtR~~~v-~~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 330 (720)
|.+|..... ... . .....+.+++++.++...++...+..... .--.+....+++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666654322 111 1 12357899999999999999887754321 1125667888889999986554433
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=5.7e-07 Score=96.36 Aligned_cols=180 Identities=19% Similarity=0.157 Sum_probs=105.2
Q ss_pred CCCc-CchHH--HHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc--CEEEEEEecCcCCHHHHHHHH
Q 038398 126 EPTV-GLEST--FDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF--DVVIWVVVSKDLQLEKIQEKI 199 (720)
Q Consensus 126 ~~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~v~~~~~~~~~~~~i 199 (720)
+.|| |.... ...+.......+ ...+.|+|++|+||||||+.+++.. ...+ ..+++++.. .+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l---~~~~~~~~v~~v~~~------~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV---VQNEPDLRVMYITSE------KFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH---HHHCCSSCEEEEEHH------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH---HHhCCCCeEEEeeHH------HHHHHH
Confidence 4455 65443 333444433332 5689999999999999999999876 2222 134555433 334444
Q ss_pred HHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----cccccccCCC-CCCCcEEEEEcCCh-------
Q 038398 200 GRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----LTKVGIPFPD-PENKSKIVFTTHFL------- 267 (720)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~iiiTtR~~------- 267 (720)
...+... . ...+...+..+.-+|+|||++.... .+.+...+.. ...|..||+||.+.
T Consensus 176 ~~~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 176 VDSMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 4444211 1 1223344444677999999975321 1222211110 13467888888752
Q ss_pred --hHhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 268 --EICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 268 --~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
.+...+.....+.+++++.++..+++.+.+.......+ .+....|++.++|.+-.+.-
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 22233333467899999999999999888753322222 34567888899998765443
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=2.2e-06 Score=85.33 Aligned_cols=180 Identities=12% Similarity=0.115 Sum_probs=98.3
Q ss_pred CCCcCchHHHHHHHHHhc---C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLG---E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..++++.+++. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 678999988877765542 1 234568899999999999999999887 222 23343332110
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc-------------c----cccccccCCC--C
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV-------------D----LTKVGIPFPD--P 254 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~l~~~~~~--~ 254 (720)
. +...........+.......+.+|+|||++... . +..+...+.. .
T Consensus 78 ------------~---~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ------------V---IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ------------S---STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ------------h---ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 000011111122222233467899999997531 0 1111111111 1
Q ss_pred CCCcEEEEEcCChhHhh-hh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHH
Q 038398 255 ENKSKIVFTTHFLEICG-AL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALIT 328 (720)
Q Consensus 255 ~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~ 328 (720)
..+..||.||....... .. .....+.++..+.++-.+++...+.... ...........+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 23455666665443211 11 1235678899999999999988775433 111222235778888888754 4544
Q ss_pred HH
Q 038398 329 IG 330 (720)
Q Consensus 329 ~~ 330 (720)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.2e-06 Score=91.52 Aligned_cols=194 Identities=9% Similarity=0.105 Sum_probs=102.5
Q ss_pred CCCcCchHHHHHHHHHh-cCCCceEEEEEcCCCChHHHHHHHHHhhhcCCC-C--CcCE--------------------E
Q 038398 126 EPTVGLESTFDKVWRCL-GEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAP-N--VFDV--------------------V 181 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~f~~--------------------~ 181 (720)
++++|++..++.+..++ ..+....+.|+|+.|+||||+|+.++....... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56899999999999988 665544499999999999999999988531111 0 0110 1
Q ss_pred EEEEecCcC-CHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCCCCCCc
Q 038398 182 IWVVVSKDL-QLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPDPENKS 258 (720)
Q Consensus 182 ~wv~v~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 258 (720)
+.+..+... ......++++..+..... ..... .+. -+.+++-++|||++.... ....+...+.....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111000 000012222222211000 00000 000 023467799999997621 1222222221223456
Q ss_pred EEEEEcCChh-Hhh-hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 259 KIVFTTHFLE-ICG-ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 259 ~iiiTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
.+|++|.+.. +.. .......+++++++.++..+.+...+.......+ -.+....|++.++|.+-.+..+
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 7777776532 211 1122367899999999999999887754321111 0356788899999987654433
No 178
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.36 E-value=2.2e-05 Score=80.41 Aligned_cols=180 Identities=15% Similarity=0.150 Sum_probs=103.4
Q ss_pred CCCcCchHHHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLG------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..++.|.+.+. ....+.|.++|++|+|||+||+.+++... .. ..+.+..+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHH---
Confidence 567999998888877652 12346799999999999999999998751 11 22333332211
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc-------------ccccccc---CCCCCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD-------------LTKVGIP---FPDPEN 256 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~ 256 (720)
.. +. ...+.....+.+.. ..++.+|+||+++.... ...+... +.....
T Consensus 84 -----------~~---~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 -----------SK---WL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp -----------CS---SC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred -----------hh---hh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00 01 11223333333332 35788999999975310 0011111 111223
Q ss_pred CcEEEEEcCChhHh-hh--hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHHH
Q 038398 257 KSKIVFTTHFLEIC-GA--LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIGR 331 (720)
Q Consensus 257 gs~iiiTtR~~~v~-~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 331 (720)
+..||.||...... .. -.....+.++..+.++-.+++..++...... .-......|++.+.|. +-.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44555566433221 11 1233567889999999999998877543211 1245678899999887 545666554
No 179
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.36 E-value=8.5e-06 Score=84.88 Aligned_cols=179 Identities=14% Similarity=0.070 Sum_probs=103.3
Q ss_pred CCCcCchHHHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLG------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+++|.+..++++.+.+. ....+.|.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 568999999999888763 1245689999999999999999999876 22 233444432111
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc-------------ccccccccCC----CCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV-------------DLTKVGIPFP----DPE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------------~~~~l~~~~~----~~~ 255 (720)
. ...........+.... ..++.+|+||+++... ....+...+. ...
T Consensus 156 ------------~----~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K----WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S----STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c----ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0011122222222222 3467899999995421 0111111111 112
Q ss_pred CCcEEEEEcCChhH-hhhh--ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC-cchHHHHHHH
Q 038398 256 NKSKIVFTTHFLEI-CGAL--KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG-LPLALITIGR 331 (720)
Q Consensus 256 ~gs~iiiTtR~~~v-~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~ 331 (720)
.+..||.||..... .... .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455556654322 1111 223467888999999999998876543211 124567889999998 4556666554
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.34 E-value=2.1e-06 Score=90.19 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=100.9
Q ss_pred CCCCcCchHHHHH---HHHHhcCCCc--eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEec----CcCCHHHH
Q 038398 125 CEPTVGLESTFDK---VWRCLGEEQV--GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVS----KDLQLEKI 195 (720)
Q Consensus 125 ~~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~----~~~~~~~~ 195 (720)
.+.+||++..++. +...+..... +.+.|+|++|+|||++|+.+++.. .....| +.+... ........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHH
Confidence 3678999998776 4555544433 589999999999999999999987 211122 222211 12233333
Q ss_pred HHHHHHHhC-C--------------------CCC-------ccCCCChhHHHHHHHHHh-----ccC----cEEEEEecc
Q 038398 196 QEKIGRRIG-F--------------------FDE-------SWKNGSLEDKTSDILRIL-----GKK----KFLLLLDDI 238 (720)
Q Consensus 196 ~~~i~~~l~-~--------------------~~~-------~~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv 238 (720)
......... . ... .............+.... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 333332210 0 000 000000122222222211 123 359999999
Q ss_pred ccc--cccccccccCCCCCCCcEEEEEcCC-----------------hhHhhhhccCceeeccCCChhhHHHHHHHHhcc
Q 038398 239 WER--VDLTKVGIPFPDPENKSKIVFTTHF-----------------LEICGALKAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 239 ~~~--~~~~~l~~~~~~~~~gs~iiiTtR~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
+.. .....+...+...... .++++|.. +.+... ...+.+++++.++..+++...+..
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHH
Confidence 753 2222222222222222 34444421 112222 234799999999999999988754
Q ss_pred CccCCCCChHHHHHHHHHHhC-CcchHHHH
Q 038398 300 DVLDNHPDIPELARSVAQECA-GLPLALIT 328 (720)
Q Consensus 300 ~~~~~~~~~~~~~~~i~~~c~-GlPLai~~ 328 (720)
... .--.+....|++.+. |.|-.+..
T Consensus 275 ~~~---~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 275 EDV---EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TTC---CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred cCC---CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 321 122566788888887 76654443
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=1.3e-06 Score=89.32 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=85.3
Q ss_pred CCcCchHHHHHHHHHhc---------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC
Q 038398 127 PTVGLESTFDKVWRCLG---------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ 191 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 191 (720)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++... ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHH--
Confidence 47899998888876553 23445799999999999999998887762 1111111112333211
Q ss_pred HHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc-----------cccccccccCCCCCCCcEE
Q 038398 192 LEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER-----------VDLTKVGIPFPDPENKSKI 260 (720)
Q Consensus 192 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~i 260 (720)
.+... +. .........+.... +..+|+||+++.. .....+...+.....+..+
T Consensus 109 ----------~l~~~---~~-g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 ----------DLVGQ---YI-GHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp ----------GTCCS---ST-TCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred ----------Hhhhh---cc-cccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 11000 01 11111112222211 4569999999743 1122222222223345677
Q ss_pred EEEcCChhH----------hhhhccCceeeccCCChhhHHHHHHHHhcc
Q 038398 261 VFTTHFLEI----------CGALKAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 261 iiTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
|.||..... ... ....+.+++++.++-..++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 777754322 111 1267899999999999999887754
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.32 E-value=5.2e-06 Score=85.26 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=104.4
Q ss_pred CCCcCchHHHHHHHHHhc----------C--CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLG----------E--EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+++|.+..+++|.+.+. . ...+.|.++|++|+|||+||+.+++.. ... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 568999999999988772 1 124679999999999999999999886 222 2333221
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc-------------ccccc---ccCCCCCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD-------------LTKVG---IPFPDPEN 256 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~l~---~~~~~~~~ 256 (720)
.+ .... ....+.....+.... ..++.+|+||+++.... ...+. ..+.....
T Consensus 86 ~l----~~~~--------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSKW--------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTTT--------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhcc--------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1100 011222233333322 34678999999975311 11111 11112234
Q ss_pred CcEEEEEcCChhHhh-h--hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHHH
Q 038398 257 KSKIVFTTHFLEICG-A--LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIGR 331 (720)
Q Consensus 257 gs~iiiTtR~~~v~~-~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 331 (720)
+..||.||....... . -.....+.++..+.++-.+++..++..... ..-......|++.+.|. +-.|..+..
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555666776533211 0 123356788899999999999988764321 11245677888898884 555555543
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.32 E-value=4.7e-06 Score=85.77 Aligned_cols=182 Identities=8% Similarity=0.013 Sum_probs=102.3
Q ss_pred CCCCcCchHHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.++++|.+..++.+.+++..+. ..++.+.|++|+|||++|+.+++.. . ..++.++.+.. ....+. ..+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~-~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVR-GPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHH-THHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHH-HHHHHH
Confidence 3678999999999999997654 3577888889999999999999876 1 12344443321 222221 111111
Q ss_pred CCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc---ccccccccCCCCCCCcEEEEEcCChhH-hh-hhccCce
Q 038398 204 GFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV---DLTKVGIPFPDPENKSKIVFTTHFLEI-CG-ALKAHEF 278 (720)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~iiiTtR~~~v-~~-~~~~~~~ 278 (720)
.... ...+++.++++||++... ....+...+.....+.++|+||....- .. .......
T Consensus 97 ~~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 97 ASAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred Hhhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 0000 012367899999997643 222222222112245678887765431 11 1111247
Q ss_pred eeccCCChhhHHHHHHH-------HhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHHHH
Q 038398 279 LKVECLGPEDAWRLFRE-------NLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGRAM 333 (720)
Q Consensus 279 ~~l~~L~~~e~~~Lf~~-------~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~l 333 (720)
+++++++.++-.+++.. .+.......+ -.+....|++.++|.+- |+..+-.+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA--DMKVVAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS--CHHHHHHHHHHTCSCTTHHHHHHHHHG
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 89999998885443322 2222111111 12677888888988665 444444433
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=2.8e-06 Score=88.03 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=100.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcC-EEEEEEecCcCCHHHHHHHHHHHhC
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFD-VVIWVVVSKDLQLEKIQEKIGRRIG 204 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~l~ 204 (720)
..++|.+..++.+..++..+..+.+.++|++|+||||+|+.++.... ...+. .+..++.+.......+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir-------- 94 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVR-------- 94 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHH--------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHH--------
Confidence 45789999999999998877655589999999999999999998762 11111 22222222222222211
Q ss_pred CCCCccCCCChhHHHHHHHHHh------ccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCChh-Hhh-hhc
Q 038398 205 FFDESWKNGSLEDKTSDILRIL------GKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFLE-ICG-ALK 274 (720)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~~-v~~-~~~ 274 (720)
..+.... .+.+-++|+|+++.. .....+...+......+++|++|.... +.. ...
T Consensus 95 ---------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 95 ---------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp ---------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred ---------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1111111 234678999998643 122222222212224556776665432 111 111
Q ss_pred cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchH
Q 038398 275 AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLA 325 (720)
Q Consensus 275 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 325 (720)
....+.+.+++.++..+.+...+...... --.+....+++.++|.+--
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~---i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLK---LSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCC---BCHHHHHHHHHHHTTCHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 22468899999999998888776432211 1145677888888887653
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.27 E-value=8.4e-06 Score=84.75 Aligned_cols=179 Identities=14% Similarity=0.111 Sum_probs=102.4
Q ss_pred CCCcCchHHHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+++|.+..++.|...+.. ...+.|.++|++|+|||+||+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 5689999999999887621 123468899999999999999999987 222 2233221
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHH-hccCcEEEEEeccccccc-------------cccccccC---CCCCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRI-LGKKKFLLLLDDIWERVD-------------LTKVGIPF---PDPEN 256 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~ 256 (720)
.+ .... .. ..+.....+... -..++.+|+||+++.... ...+...+ .....
T Consensus 119 ~l----~~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DL----VSKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HH----HSCC-----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HH----hhhh-------cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 1110 11 112223333332 235788999999975321 11111111 11223
Q ss_pred CcEEEEEcCChhHh-hh--hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHHH
Q 038398 257 KSKIVFTTHFLEIC-GA--LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIGR 331 (720)
Q Consensus 257 gs~iiiTtR~~~v~-~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 331 (720)
+..||.||...... .. -.....+.++..+.++-.+++..++...... .-......|++.+.|. +-.|..+..
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV---LTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566566543221 11 1233567889999999999998887643211 1145577889999884 545655543
No 186
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.26 E-value=2.4e-05 Score=82.51 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=100.6
Q ss_pred CCCcCchHHHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+++|.+..++.+..++.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.++++.-.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 5689999999999888721 234689999999999999999998876 22 223333322111
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc-------------cccccccC---CC-CC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD-------------LTKVGIPF---PD-PE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------------~~~l~~~~---~~-~~ 255 (720)
.. .. ........+.... ...+.+|+||+++.... ...+...+ .. ..
T Consensus 187 ~~---------------~g-~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VG-EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cc-hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00 1122222232222 34568999999964310 00111111 01 12
Q ss_pred CCcEEEEEcCChhHh-hh-h-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 038398 256 NKSKIVFTTHFLEIC-GA-L-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALITIGR 331 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 331 (720)
....||.||...... .. . .....+.+...+.++..+++...+.... ..-..+....|++.+.|..- +|..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG---SPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC---CCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 234455566543221 11 1 1224678899999999999988875432 11224567889999988544 6655543
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=3.6e-05 Score=77.98 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=101.9
Q ss_pred CCCcCchHHHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..++.+.+++.. ...+.|.|+|++|+||||+|+.+++.. ... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 5689999999998887621 234689999999999999999999876 222 23333322110
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHH-HhccCcEEEEEecccccccc-------------ccc---cccCCC--C
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILR-ILGKKKFLLLLDDIWERVDL-------------TKV---GIPFPD--P 254 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-------------~~l---~~~~~~--~ 254 (720)
. ...........+.. ....++.+|+||+++....- ..+ ...++. .
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 11122223333332 22356789999999653110 001 011111 1
Q ss_pred CCCcEEEEEcCChhH-----hhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch-HHHH
Q 038398 255 ENKSKIVFTTHFLEI-----CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL-ALIT 328 (720)
Q Consensus 255 ~~gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~ 328 (720)
+.+..||.||..... .. .....+.++..+.++...++...+..... .--.+....+++.+.|.+- ++..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 133456666665322 22 22356777888888888888877654321 1124567789999999875 5655
Q ss_pred HHH
Q 038398 329 IGR 331 (720)
Q Consensus 329 ~~~ 331 (720)
+..
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.24 E-value=1.3e-06 Score=81.87 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999987666788999999999999999998876
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.23 E-value=3.6e-05 Score=82.51 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=102.1
Q ss_pred CCCcCchHHHHHHHHHhc------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCLG------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..++.+...+. ....+.|.++|++|+|||+||+.+++... .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CC-----CEEEEeHHH---
Confidence 568999999999887762 12346899999999999999999998751 11 233333221
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHH-hccCcEEEEEeccccccc-------------cccccccCCC---CCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRI-LGKKKFLLLLDDIWERVD-------------LTKVGIPFPD---PEN 256 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~ 256 (720)
+.... .+. ... ....+... -..++.+|+||+++.... ...+...+.. ...
T Consensus 204 -l~~~~---~g~-----~~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LVSKW---LGE-----SEK----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp -----------------CCC----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HHhhh---cch-----HHH----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11000 010 111 12222222 235788999999975310 1111111211 234
Q ss_pred CcEEEEEcCChhHhh-h-h-ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHHHH
Q 038398 257 KSKIVFTTHFLEICG-A-L-KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITIGR 331 (720)
Q Consensus 257 gs~iiiTtR~~~v~~-~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 331 (720)
+..||.||....... . . .....+.++..+.++-..+|..++...... .-......|++.+.|. +-.|..+..
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS---LTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556666775443211 1 1 223567888889999999998887543211 1245577889999884 556655543
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.20 E-value=1e-05 Score=83.27 Aligned_cols=174 Identities=17% Similarity=0.181 Sum_probs=96.9
Q ss_pred CCCc-CchH--HHHHHHHHhcCC--CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 126 EPTV-GLES--TFDKVWRCLGEE--QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~v-Gr~~--~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
++|| |... ....+..++... ....+.|+|++|+||||||+.+++..... . ..+++++.. .+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHH------HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHH------HHHHHHH
Confidence 5665 5433 334444444433 34678999999999999999999876211 1 234555432 2333333
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----cccccccCC-CCCCCcEEEEEcCChh-------
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----LTKVGIPFP-DPENKSKIVFTTHFLE------- 268 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~~~-~~~~gs~iiiTtR~~~------- 268 (720)
..+.. .. ...+...+. +..+|+|||+..... ...+...+. ....|..||+||.+..
T Consensus 82 ~~~~~-------~~----~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKK-------GT----INEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHH-------TC----HHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHc-------Cc----HHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 33311 01 111222222 367999999965321 122211111 0123567888775431
Q ss_pred --HhhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchH
Q 038398 269 --ICGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLA 325 (720)
Q Consensus 269 --v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 325 (720)
+...+.....+++++ +.++..+++...+...... --.+....|++.+ |.+-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~---l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE---LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHhC-CCHHH
Confidence 122223335689999 9999999998887543211 2256677888888 76543
No 191
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=1.8e-06 Score=78.75 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=25.1
Q ss_pred hhccccccccccCCCccccccccccCCcceeeecCCCCCcc
Q 038398 676 RSTQSLFLRCFNDSKSLDIFCLAGLRNLNKLYVAGCKHLED 716 (720)
Q Consensus 676 ~~L~~L~l~~~~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~ 716 (720)
++|++|+|++|.+++.-.+..+.++++|+.|+|++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 35666666666666655555566666666666666666554
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.16 E-value=4e-05 Score=77.72 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=98.5
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
++++|.+..++++.+++.. ...+.|.|+|++|+|||+||+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 5689999988888776631 345679999999999999999999886 222 22222 2
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----------------cccccccCC--CC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----------------LTKVGIPFP--DP 254 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 254 (720)
..+.... .+. ........+.......+.+|+||+++.... ...+...+. ..
T Consensus 83 ~~l~~~~---~g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2232221 111 111222222333345689999999974210 111111111 12
Q ss_pred CCCcEEEEEcCChhHh-hh-h---ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchH
Q 038398 255 ENKSKIVFTTHFLEIC-GA-L---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLA 325 (720)
Q Consensus 255 ~~gs~iiiTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 325 (720)
..+..||.||...... .. . .....+.++..+.++-.+++...+..........+ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 2345667777554322 11 1 12356889999999999999887754332222233 3455667777654
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.16 E-value=2.3e-05 Score=80.72 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=99.3
Q ss_pred chHHHHHHHHHhcCCC-ceEEEEEcCCCChHHHHHHHHHhhhcCCCC-------------------CcCEEEEEEec---
Q 038398 131 LESTFDKVWRCLGEEQ-VGIIGLYGMGGVGKTTLLTKINNKLLGAPN-------------------VFDVVIWVVVS--- 187 (720)
Q Consensus 131 r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~v~--- 187 (720)
.++..+.+...+..+. ...+.++|++|+||||+|+.+.+....... +++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3556677777776655 457999999999999999999887621110 122 1222211
Q ss_pred CcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcC
Q 038398 188 KDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTH 265 (720)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR 265 (720)
....+..+ +++...+.... ..+++-++|+|+++.. .....+...+.....++.+|++|.
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCCCHHHH-HHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 11111111 12222221100 1246779999999753 222333222333334567777665
Q ss_pred Chh-Hhh-hhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 266 FLE-ICG-ALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 266 ~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
+.. +.. ..+....+++++++.++..+.+..... --.+.+..+++.++|.|..+..+
T Consensus 147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--------MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--------CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred ChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 543 221 112235789999999999999987751 11355678999999999765443
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=5.7e-06 Score=85.93 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=45.7
Q ss_pred CCCcccEEEccCCCCc---------CcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCccc-chhh
Q 038398 514 TCPHLLSLFLSDNSLK---------MSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHL-PIEL 583 (720)
Q Consensus 514 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i 583 (720)
.+++|+.|.+..+... ......+..+|+|+.|+|++|... .+|. + .+++|++|+|..|.+..- ...+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 4567888877554221 112244567777888888776322 3343 3 367777777777665421 1123
Q ss_pred h--cCCCCCEEecc
Q 038398 584 Q--KLVNLKCLNLE 595 (720)
Q Consensus 584 ~--~l~~L~~L~l~ 595 (720)
. .+++|++|+|+
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 2 57777777775
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.13 E-value=1.7e-05 Score=85.78 Aligned_cols=151 Identities=14% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCC--CCCc-C-EEEEEEecCcCCHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGA--PNVF-D-VVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~-~~~wv~v~~~~~~~~~~~~i~ 200 (720)
.+++|||+.+++.+...+......-+.++|++|+|||++|+.+++..... .... + .++.++++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------
Confidence 35689999999999999976555677899999999999999999886210 0011 1 12222222
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHh-------hhh
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEIC-------GAL 273 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~-------~~~ 273 (720)
... ...........+...-..++.+|++| ........+...+. ....++|.+|...... ...
T Consensus 246 ---~~~----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 ---TKY----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ---ccc----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000 00001112222222333567899999 22122222222222 2235666666544311 111
Q ss_pred ccCceeeccCCChhhHHHHHHHHhcc
Q 038398 274 KAHEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 274 ~~~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
.-...+.+++++.++..+++...+..
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 12246899999999999999877643
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=5.1e-05 Score=78.55 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=98.0
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4567999988888765521 245678999999999999999999987 2232 3333222110
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc----------------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD----------------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~ 253 (720)
. .....+.....+.... ...+++|++|+++.... +..+...+. .
T Consensus 221 -------------k----~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 -------------K----YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp -------------S----STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred -------------c----ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0 0111222223333222 34689999999875210 011111111 1
Q ss_pred CCCCcEEEEEcCChhHh-----hhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEIC-----GALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||.||...... ..-.-...+.++..+.++-.++|..+..........+ ...|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 22344566676544331 1112356788999999999999988876544233333 456777887754
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=7.6e-06 Score=85.00 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=82.2
Q ss_pred ccccceeEEEeccccccc----------CCC-CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCcc
Q 038398 491 QNWRNVRRMSLMKNKIEN----------LSE-TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSG 559 (720)
Q Consensus 491 ~~~~~l~~L~l~~~~~~~----------~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~ 559 (720)
..+++|+.|.+....... +.. +..+|+|+.|.+++|.-..+++ +. +++|+.|+|..|.+.......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHH
Confidence 345678888775442211 111 1456888888888873123333 33 788888888877544332233
Q ss_pred cc--CCCCCCEEeccCC--C------Ccccchhh--hcCCCCCEEeccCCcCCCCCchhhh--hccccCceeeccccCCC
Q 038398 560 IS--TLVSLEHLDLSST--A------ITHLPIEL--QKLVNLKCLNLEYMNNLNQFPRLVI--SAFSKLQVLRMFDCGGS 625 (720)
Q Consensus 560 i~--~l~~L~~L~L~~~--~------i~~lp~~i--~~l~~L~~L~l~~~~~l~~lp~~~~--~~l~~L~~L~~~~~~~~ 625 (720)
++ .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+.... ..+++|++|++. .|
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs---~n 289 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS---AG 289 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC---SS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC---CC
Confidence 33 6788888887531 1 22222222 2467888888877532111111111 135566666653 34
Q ss_pred cccchhcccccCCccccHHHhcCCCCCceeEEEecch
Q 038398 626 KIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSW 662 (720)
Q Consensus 626 ~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~ 662 (720)
.+..... ..+...+.++++|+.|+++.|.+
T Consensus 290 ~L~d~G~-------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 290 VLTDEGA-------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CCBHHHH-------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCChHHH-------HHHHhhcccCCcceEEECCCCcC
Confidence 4332110 01122234556677777766554
No 198
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.03 E-value=1.8e-05 Score=78.82 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=90.5
Q ss_pred CCCCcCchHHHHHHHHHhcC------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 125 CEPTVGLESTFDKVWRCLGE------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
..+++|.+..++++.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~~- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFIE- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTTT-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHHH-
Confidence 36789999888877665531 123447899999999999999999886 22221 111111000
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc-----------------ccccccccCCC--
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV-----------------DLTKVGIPFPD-- 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~-- 253 (720)
... .. .......... .....++.+|+|||++... .+..+...+..
T Consensus 83 ---------~~~-~~---~~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 83 ---------MFV-GL---GASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp ---------SCS-SS---CSSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred ---------hhc-ch---HHHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 000 00 1111112222 2223467899999996421 11222222211
Q ss_pred -CCCCcEEEEEcCChhHhh--hh---ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcch
Q 038398 254 -PENKSKIVFTTHFLEICG--AL---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPL 324 (720)
Q Consensus 254 -~~~gs~iiiTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 324 (720)
......||.||....... .. .....+.++.++.++-.+++...+..........+ ..|++.+.|.|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 112245666665443211 11 12346788999999999999887654321112222 234555666543
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.7e-05 Score=79.00 Aligned_cols=170 Identities=14% Similarity=0.177 Sum_probs=97.1
Q ss_pred CCCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 456789988888766552 1 245789999999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc----------------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD----------------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~ 253 (720)
. .....+.....+.... ...+++|++|+++.... +..+...+. .
T Consensus 254 -------------k----~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 -------------K----YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp -------------S----SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred -------------c----cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0 0111122222222222 34789999999974210 011111111 1
Q ss_pred CCCCcEEEEEcCChhHhhh--hc---cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEICGA--LK---AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||.||........ .. -...+.++..+.++-.++|+.++.........+ ...+++.+.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 2234567777755443211 11 235688888888888899988775443223333 355677777754
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.99 E-value=1.5e-05 Score=93.13 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=85.2
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcC--CCCCc--CEEEEEEecCcCCHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG--APNVF--DVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f--~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
.+++|||++++++++..+.......+.++|++|+||||+|+.+++.... +.... ..+++++++.-..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 4678999999999999997765667889999999999999999887521 11111 1344443321100
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhc--cCcEEEEEeccccccc-------cc---cccccCCCCCCCcEEEEEcCChh
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILG--KKKFLLLLDDIWERVD-------LT---KVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~---~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
+.. .....+.....+...+. +++.+|++|+++.... ++ .+...+ . ..+..+|.+|....
T Consensus 240 ---g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 ---GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHH
T ss_pred ---cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchH
Confidence 000 11122333333333332 3678999999975320 11 111111 1 12344555554333
Q ss_pred Hh-----h-hhccCceeeccCCChhhHHHHHHHHh
Q 038398 269 IC-----G-ALKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 269 v~-----~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
.. . ...-...+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 21 1 11112458899999999999987554
No 201
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=7.6e-05 Score=78.51 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=96.1
Q ss_pred CCCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.++.+++|.+.+. . ...+-|.++||+|+|||+||+++++.. ... .+.+..+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l--- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQL--- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhh---
Confidence 455799998888876642 1 245789999999999999999999987 222 233332211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc-------c---------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV-------D---------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~---------~~~l~~~~~--~ 253 (720)
... .....+.....+.... ...+++|++|+++... . ...+...+. .
T Consensus 252 -----------~~~----~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 -----------VQM----YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -----------CSS----CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -----------hhc----ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 000 0111122223333222 3468999999986310 0 011111111 1
Q ss_pred CCCCcEEEEEcCChhHhh-hh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEICG-AL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||.||....... .+ .-...+.++..+.++-.++|+.++.........+ ...|++.+.|+-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 223445666775544321 11 2235688888899988899887765433223333 356677887753
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=2.5e-06 Score=83.94 Aligned_cols=83 Identities=28% Similarity=0.341 Sum_probs=55.1
Q ss_pred ccCCcccEEEccCCCCCc--cCCccccCCCCCCEEeccCCCCcccchhhhcCC--CCCEEeccCCcCCCCCc------hh
Q 038398 537 QSMPSLRVFNMSNNHLLW--KLPSGISTLVSLEHLDLSSTAITHLPIELQKLV--NLKCLNLEYMNNLNQFP------RL 606 (720)
Q Consensus 537 ~~l~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~l~~~~~l~~lp------~~ 606 (720)
.++++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.|+.+. .+..+. +|+.|+|++|.-...+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 567888888888886654 44566667888888888888887763 344444 78888888854323333 12
Q ss_pred hhhccccCceeecc
Q 038398 607 VISAFSKLQVLRMF 620 (720)
Q Consensus 607 ~~~~l~~L~~L~~~ 620 (720)
++..+++|+.|+-.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 45667777776544
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=3.3e-05 Score=78.08 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCC-CCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCC
Q 038398 130 GLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAP-NVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFD 207 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~ 207 (720)
|.++.++.+...+..+..+.+.++|++|+||||+|+.+.+...... .+.+ +.++..+. ...+..+ +++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4566778888888776677899999999999999999987531111 2333 34444332 3333333 22444332111
Q ss_pred CccCCCChhHHHHHHHHHhccCcEEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh-hHhhhhccCceeeccCC
Q 038398 208 ESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL-EICGALKAHEFLKVECL 284 (720)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~-~v~~~~~~~~~~~l~~L 284 (720)
..+++-++|+|+++.. .....+...+......+.+|++|.+. .+....... .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 1245678999999753 23333433333334566777666443 343333334 8999999
Q ss_pred ChhhHHHHHHHHh
Q 038398 285 GPEDAWRLFRENL 297 (720)
Q Consensus 285 ~~~e~~~Lf~~~~ 297 (720)
++++..+.+.+.+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=9.1e-05 Score=77.71 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=97.1
Q ss_pred CCCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ...| +.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~-- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELV-- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhh--
Confidence 456799998888876542 1 356789999999999999999999987 2222 333322110
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH-hccCcEEEEEeccccccc----------------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI-LGKKKFLLLLDDIWERVD----------------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~ 253 (720)
.. .....+.....+... -...+++|++|+++.... ...+...+. .
T Consensus 281 ------------sk----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 281 ------------QK----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ------------CC----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ------------cc----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 00 011112222223222 234789999999874210 001111111 1
Q ss_pred CCCCcEEEEEcCChhHhh-h-h---ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEICG-A-L---KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||.||....... . . .-...+.++..+.++-.++|+.++.........+ ...|++.|.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 223445566775433311 1 1 2346788999999999999988876543233333 355677888754
No 205
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.90 E-value=1.7e-05 Score=75.30 Aligned_cols=121 Identities=21% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCCCcCchH----HHHHHHHHhcCC----CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHH
Q 038398 125 CEPTVGLES----TFDKVWRCLGEE----QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQ 196 (720)
Q Consensus 125 ~~~~vGr~~----~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 196 (720)
.++|++... .++.+.+++... ....+.|+|++|+|||+||+.+++... .....++|+.++ .+.
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELF 94 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHH
Confidence 356665443 444555555432 127899999999999999999998872 223345666543 344
Q ss_pred HHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccc--ccccc--ccc-cCCC-CCCCcEEEEEcCC
Q 038398 197 EKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWER--VDLTK--VGI-PFPD-PENKSKIVFTTHF 266 (720)
Q Consensus 197 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~-~~~~-~~~gs~iiiTtR~ 266 (720)
..+..... ........ +.+.+. -+|||||++.. ..|.. +.. .+.. ...+.++|+||..
T Consensus 95 ~~~~~~~~-------~~~~~~~~----~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQ-------DQTMNEKL----DYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC----------CCCHHHH----HHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhc-------cchHHHHH----HHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 44433221 11122222 223322 39999999642 22221 211 1111 1235578888864
No 206
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.86 E-value=1.2e-05 Score=71.66 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=35.4
Q ss_pred CCcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|+...++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999998887732 233457899999999999999998875
No 207
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.86 E-value=0.00012 Score=79.03 Aligned_cols=177 Identities=13% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCCcCchHHHHHHHHHhc-------------CCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG-------------EEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
..++|.+..++++.+++. .....-|.|+|++|+|||++|+.+++.. ... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch-----
Confidence 457999999999887763 1344678999999999999999998875 222 2334321
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc-------------cccccccCC--CCCCC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD-------------LTKVGIPFP--DPENK 257 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~g 257 (720)
.+ ...+ ...........+.....+++.+|+||+++.... ...+...+. ....+
T Consensus 273 -~l----~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -EI----MSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -HH----HTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -Hh----hhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11 1110 111111222223333456788999999953110 011111111 12234
Q ss_pred cEEEEEcCChhH-hhhh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc-chHHHHH
Q 038398 258 SKIVFTTHFLEI-CGAL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL-PLALITI 329 (720)
Q Consensus 258 s~iiiTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 329 (720)
..||.||..... .... .-...+.+...+.++-.+++..++.......... ..++++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 456666654422 1111 2234688999999999999998876443222223 34566677774 5445444
No 208
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00012 Score=75.99 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=95.9
Q ss_pred CCCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.++.+++|.+.+. . ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHh---
Confidence 345789988888766542 1 245789999999999999999999987 2222 22322211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc----------------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD----------------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~ 253 (720)
... .....+.....+.... ...+++|++|+++.... +..+...+. .
T Consensus 253 -----------~sk----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 253 -----------IQK----YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------CCS----SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------hhc----cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 000 1111222333333322 34689999999874210 001111111 1
Q ss_pred CCCCcEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||.||........ + .-...+.++..+.++-.++|..++.......+.+ ...|++.+.|+-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2234456667754443221 1 1234678888888988999988876544333333 355667777753
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=0.00024 Score=70.11 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=93.5
Q ss_pred CCCcCchHHHHHHHHHh---cC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCL---GE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..++++.+.+ .. ...+-|.|+|++|+||||||+.+++.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 56899998887765543 21 123468899999999999999999886 2222 3332221100
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----------------cccccccCC--CCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----------------LTKVGIPFP--DPE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 255 (720)
. ............+.......+.++++|+++.... ...+...+. ...
T Consensus 84 ------------~---~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ------------M---FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ------------S---CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ------------H---hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 0111122222223333344678999999853210 001110010 112
Q ss_pred CCcEEEEEcCChh-Hhhhh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCC-cchHHHHH
Q 038398 256 NKSKIVFTTHFLE-ICGAL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAG-LPLALITI 329 (720)
Q Consensus 256 ~gs~iiiTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~ 329 (720)
.+..||.||.... +.... .....+.++..+.++-.+++..++.......... ...++..+.| .+--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 3445666665443 21111 1234677888888888888877764432122222 3456677777 56544433
No 210
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.82 E-value=0.00015 Score=83.53 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCC--cCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNV--FDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
.+++|||+++++++...+......-+.++|++|+|||++|+.+++........ ....-++.++-
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 35689999999999999976655678899999999999999999875211101 01111111111
Q ss_pred hCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHhh-------hhcc
Q 038398 203 IGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEICG-------ALKA 275 (720)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~~-------~~~~ 275 (720)
+... ...........+...-..++.+|++|. .......+...+. ....++|.||....... ...-
T Consensus 245 -g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 -GTKY---RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred -cccc---cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000 011111222223333346788999992 1111122222222 23456666665444110 0111
Q ss_pred CceeeccCCChhhHHHHHHHHhcc
Q 038398 276 HEFLKVECLGPEDAWRLFRENLRR 299 (720)
Q Consensus 276 ~~~~~l~~L~~~e~~~Lf~~~~~~ 299 (720)
...+.++.++.++..+++......
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHH
Confidence 256899999999999999876543
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.1e-05 Score=75.38 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCcccEEEccCCCCcCcc----hHHhccCCcccEEEccCCCCCcc----CCccccCCCCCCEEec--cCCCCcc-----c
Q 038398 515 CPHLLSLFLSDNSLKMST----DDFFQSMPSLRVFNMSNNHLLWK----LPSGISTLVSLEHLDL--SSTAITH-----L 579 (720)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L--~~~~i~~-----l 579 (720)
.++|++|++++|.+.... ...+...++|++|+|++|.+... +...+....+|++|+| ++|.|+. +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 344555555555443211 11233334455555555533221 2333344444555555 4444441 2
Q ss_pred chhhhcCCCCCEEeccC
Q 038398 580 PIELQKLVNLKCLNLEY 596 (720)
Q Consensus 580 p~~i~~l~~L~~L~l~~ 596 (720)
...+...++|++|++++
T Consensus 144 ~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHCSSCCEEECCC
T ss_pred HHHHHhCCCcCEEeccC
Confidence 23333344445555444
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00035 Score=73.44 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=90.8
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 4567999988888775521 245679999999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc----------c------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV----------D------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~l~~~~~--~ 253 (720)
. .....+.....+.... ...++++++|+++... + +..+...+. .
T Consensus 245 -------------~----~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 -------------K----YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp -------------S----SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred -------------c----ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 0 0111122222222222 3468999999986311 0 111111111 1
Q ss_pred CCCCcEEEEEcCChhHh-hh-h---ccCceeeccCCC-hhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 254 PENKSKIVFTTHFLEIC-GA-L---KAHEFLKVECLG-PEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v~-~~-~---~~~~~~~l~~L~-~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
...+..||.||...... .. . .-...++++.++ .++-..+|..++.........+ ...+++.+.|+-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 23344566677543321 11 1 123457776554 4555566766654433223333 356677777753
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=1.2e-05 Score=74.74 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCCcC----chHHHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 126 EPTVG----LESTFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 126 ~~~vG----r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
+++++ ++..++.+.+++.. .....++|+|++|+||||||+.+++... ....+ .+++++ ..++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~-~~~~~~------~~~~~~~ 81 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI-RGYFFD------TKDLIFR 81 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC-CCCEEE------HHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC-eEEEEE------HHHHHHH
Confidence 44554 34445555555533 2347899999999999999999988762 01111 223333 3444444
Q ss_pred HHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccc--ccccc--cccccCC-CCCCCcEEEEEcCC
Q 038398 199 IGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWE--RVDLT--KVGIPFP-DPENKSKIVFTTHF 266 (720)
Q Consensus 199 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~~~-~~~~gs~iiiTtR~ 266 (720)
+........ .... .+.+. +.-+|||||++. ...|. .+...+. ....|..+|+||..
T Consensus 82 ~~~~~~~~~-------~~~~----~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 82 LKHLMDEGK-------DTKF----LKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHTC-------CSHH----HHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHhcCch-------HHHH----HHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 444332111 1112 22222 456899999973 22221 1111111 11246788888864
No 214
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.6e-05 Score=72.38 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=50.9
Q ss_pred CcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCcc-CCccccCC----CCCCEEeccCC-CCccc-chhhhcCCC
Q 038398 516 PHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWK-LPSGISTL----VSLEHLDLSST-AITHL-PIELQKLVN 588 (720)
Q Consensus 516 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-lp~~i~~l----~~L~~L~L~~~-~i~~l-p~~i~~l~~ 588 (720)
.+|+.|++++|.++...-..+.++++|+.|+|++|..++. --..++.+ ++|++|+|++| +|+.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4678888888776655444466777777777777753322 11223332 35677777766 36531 123556667
Q ss_pred CCEEeccCCcCCCC
Q 038398 589 LKCLNLEYMNNLNQ 602 (720)
Q Consensus 589 L~~L~l~~~~~l~~ 602 (720)
|++|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777655544
No 215
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.74 E-value=0.00061 Score=70.01 Aligned_cols=170 Identities=20% Similarity=0.163 Sum_probs=92.8
Q ss_pred CCCcCchHHHHHHHHHhcC-----CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 126 EPTVGLESTFDKVWRCLGE-----EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
+.++|.+..++.+...+.. .....++++|++|+||||||+.++... ...|. . .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~--~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---V--TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---E--EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---E--EechHh---------
Confidence 5678998888887666642 234679999999999999999999887 22221 1 111100
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEecccccc--ccccccccCCC--------CC----------CCcEE
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERV--DLTKVGIPFPD--------PE----------NKSKI 260 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~--------~~----------~gs~i 260 (720)
....+. ..+...+ .++.++++|++.... ..+.+...+.. .+ ....+
T Consensus 88 ------------~~~~~l-~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 88 ------------VKQGDM-AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------CSHHHH-HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------cCHHHH-HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 001111 1111112 234467778875421 11111000000 00 11223
Q ss_pred E-EEcCChhHhhhh--ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHHH
Q 038398 261 V-FTTHFLEICGAL--KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALITI 329 (720)
Q Consensus 261 i-iTtR~~~v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 329 (720)
+ .|++...+...+ .....+.+++.+.++-.+++.+.+.... ...-.+.+..|++.+.|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2 344433332111 1123578999999999999988764322 1222567889999999999755433
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=0.00031 Score=75.13 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCCcCchHHHHHHHHHh---cC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCL---GE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+++|.+..++++.+.+ .. .-.+-|.|+|++|+|||+||+.++... ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 56789998777665543 22 123458899999999999999999886 2222 33333221110
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhccCcEEEEEeccccccc----------------cccccccCC--CCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVD----------------LTKVGIPFP--DPE 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 255 (720)
+...........+.......+.+|+||+++.... +..+...+. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0000111122223334446789999999965210 111111111 112
Q ss_pred CCcEEEEEcCChhHhh-h-hc---cCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 256 NKSKIVFTTHFLEICG-A-LK---AHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 256 ~gs~iiiTtR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
.+..||.||....... . .. -...+.++..+.++-.+++..++.......... ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3556666776554322 1 11 224678888888888888887765433222222 344777888876
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00021 Score=72.70 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=37.9
Q ss_pred CCCcCchHHHHHHHHHhcC--------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|++..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999988877643 234568899999999999999999887
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=6.6e-05 Score=73.83 Aligned_cols=78 Identities=29% Similarity=0.394 Sum_probs=47.9
Q ss_pred CCcccEEEccCCCCcCcch--HHhccCCcccEEEccCCCCCccCCccccCCC--CCCEEeccCCCCcc-cc-------hh
Q 038398 515 CPHLLSLFLSDNSLKMSTD--DFFQSMPSLRVFNMSNNHLLWKLPSGISTLV--SLEHLDLSSTAITH-LP-------IE 582 (720)
Q Consensus 515 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~--~L~~L~L~~~~i~~-lp-------~~ 582 (720)
+++|++|+|++|.+..+.+ ..+..+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+.. +| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3455555566555555432 3456777777777777754432 2333333 78888888887763 33 23
Q ss_pred hhcCCCCCEEec
Q 038398 583 LQKLVNLKCLNL 594 (720)
Q Consensus 583 i~~l~~L~~L~l 594 (720)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 677888888874
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.63 E-value=0.00032 Score=80.88 Aligned_cols=155 Identities=16% Similarity=0.285 Sum_probs=90.4
Q ss_pred CCCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcC--CCC-CcCEEEE-EEecCcCCHHHHHHHHH
Q 038398 125 CEPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLG--APN-VFDVVIW-VVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~-~f~~~~w-v~v~~~~~~~~~~~~i~ 200 (720)
.++++||+.+++++.+.|......-+.|+|++|+|||++|+.+++.... +.. .....+| +..+.-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 3568999999999999998766677889999999999999999887521 110 1122222 211110
Q ss_pred HHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEecccccc--------c---cccccccCCCCCCCcEEEEEcCChh
Q 038398 201 RRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWERV--------D---LTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 201 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~---~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
+... . .....+.....+.+.+. .++.+|++|+++... . ...+...+. ..+..+|.+|....
T Consensus 254 --~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 --LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE 326 (758)
T ss_dssp ---CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHH
T ss_pred --hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchH
Confidence 0000 0 12233444444444443 357899999997531 1 111222222 23456666665443
Q ss_pred Hhhh-------hccCceeeccCCChhhHHHHHHHHh
Q 038398 269 ICGA-------LKAHEFLKVECLGPEDAWRLFRENL 297 (720)
Q Consensus 269 v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 297 (720)
.... ......+.++.++.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 2111 1112368899999999998887654
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.62 E-value=0.00017 Score=73.39 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=43.3
Q ss_pred CCCcCchHHHHHHHHHhcCC---------CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 126 EPTVGLESTFDKVWRCLGEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 35789999998888777431 135899999999999999999998762 1112345555554
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.55 E-value=0.00057 Score=73.52 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCcCchHHHHHHHHH---hcCC--CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRC---LGEE--QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~---L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.++|.++.++.+..+ +..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 6789999987765443 3333 23578899999999999999999887
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.52 E-value=0.00022 Score=70.77 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.0
Q ss_pred CCCcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.++|.+..+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 5679999988888766532 223567899999999999999999876
No 223
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=9.5e-05 Score=68.93 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=12.2
Q ss_pred HhcCCCCCceeEEEecchhh
Q 038398 645 ELMGMKHLMVLTITLKSWQA 664 (720)
Q Consensus 645 ~l~~l~~L~~L~~~~~~~~~ 664 (720)
.+..++.|+.|++++|.+..
T Consensus 146 ~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHCSSCCEEECCCSSHHH
T ss_pred HHHhCCCcCEEeccCCCCCh
Confidence 44555667777776666543
No 224
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.45 E-value=0.00097 Score=67.05 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+..+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999987
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.42 E-value=0.00042 Score=70.09 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999999888877643 334567899999999999999999865
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.39 E-value=0.00034 Score=79.29 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=94.4
Q ss_pred CCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 127 PTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++.|.++.+++|.+.+. . ..++-|.++|++|+|||+||+++++.. ..+ .+.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 45688888877766541 1 245789999999999999999999887 222 23443221
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHH-HhccCcEEEEEeccccccc-------------cccccccCC--CCCCC
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILR-ILGKKKFLLLLDDIWERVD-------------LTKVGIPFP--DPENK 257 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~g 257 (720)
+... .....+.....+.+ .-...+.+|+||+++.... ...+...+. ....+
T Consensus 274 -----l~sk--------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 274 -----IMSK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -----HHSS--------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -----hhcc--------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 1100 01112222222322 3345789999999975210 001111110 11123
Q ss_pred cEEEEEcCChh-Hhhhh----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 258 SKIVFTTHFLE-ICGAL----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 258 s~iiiTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
..||.||.... +-..+ .-...++++..+.++-.++|..+........+.+ ...|++.+.|..
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 34555664433 21111 2245788899999999999988765543333333 455777888764
No 227
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.38 E-value=0.0022 Score=69.02 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=91.5
Q ss_pred CCCCcCchHHHHHHHHHh---cCC---------CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 125 CEPTVGLESTFDKVWRCL---GEE---------QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 125 ~~~~vGr~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
.++++|.+..++++.+.. ... -.+-|.|+|++|+||||||+.++... .. ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH-
Confidence 367899998777665543 221 12348999999999999999999876 22 233443322100
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhcc----CcEEEEEeccccccc----------------cccccccCC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILGK----KKFLLLLDDIWERVD----------------LTKVGIPFP 252 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~~~----------------~~~l~~~~~ 252 (720)
.........+...++. .+.++++|+++.... +..+...+.
T Consensus 103 --------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 --------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp --------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred --------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 0111122333344433 357999999964210 111111111
Q ss_pred C--CCCCcEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 253 D--PENKSKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 253 ~--~~~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
. ...+..++.||....+... . .-...+.++..+.++-.+++..++.......... ...|++.+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1 1223445556665554221 1 1234678888898888888887664322111112 345677777765
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.37 E-value=0.0027 Score=63.05 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=80.8
Q ss_pred CCCcCchHHHHHHHHHhc----C---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLG----E---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
.++.|.++.+++|.+.+. . .-.+-++++|++|+||||||+.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 567788888887766542 1 112339999999999999999999876 11 2344432211000
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc---------ccc----ccccCCC--CCC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD---------LTK----VGIPFPD--PEN 256 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~~~----l~~~~~~--~~~ 256 (720)
...........+.+.. ...+.++++|+++.... ... +...+.. ...
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111222222222 34578999999864210 000 0011111 112
Q ss_pred CcEEEEEcCChhHhhhh-----ccCceeeccCCChhhHHHHHHHHhc
Q 038398 257 KSKIVFTTHFLEICGAL-----KAHEFLKVECLGPEDAWRLFRENLR 298 (720)
Q Consensus 257 gs~iiiTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~ 298 (720)
..-++.+|....+.... .-...+.++..+.++-.+++.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 33455566655553221 2345678899999999999988764
No 229
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.33 E-value=0.00037 Score=73.58 Aligned_cols=195 Identities=16% Similarity=0.173 Sum_probs=100.0
Q ss_pred ccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+++|+.+.+..+. ..++ .+.+|.+|+.+.+..+ ++.+....|.++..|+.+.+..+. . .+.........|
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~-~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-Y-YLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-C-EECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-e-EeehhhcccCCC
Confidence 46667778888876542 2232 2356777877777665 555555567777777766665541 1 111222223344
Q ss_pred CEEeccCCCCcccc-hhhhcCCCCCEEeccCCcCCC---------------------CCchhhhhccccCceeeccccCC
Q 038398 567 EHLDLSSTAITHLP-IELQKLVNLKCLNLEYMNNLN---------------------QFPRLVISAFSKLQVLRMFDCGG 624 (720)
Q Consensus 567 ~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~---------------------~lp~~~~~~l~~L~~L~~~~~~~ 624 (720)
+.+.+..+ ++.++ ..+..+.+|+.+.+..+ .. .++...+..+.+|+.+.+.+
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~--- 306 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD--- 306 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT---
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeecccccccccccccccccc---
Confidence 44444322 22221 12334444444444331 11 23333344444555444431
Q ss_pred CcccchhcccccCCccccHHHhcCCCCCceeEEEecchhhHHHHhhhhhhhhhccccccccccCCCccccccccccCCcc
Q 038398 625 SKIERLKINVLFGGHQFLVEELMGMKHLMVLTITLKSWQALKELLISQELQRSTQSLFLRCFNDSKSLDIFCLAGLRNLN 704 (720)
Q Consensus 625 ~~l~~l~~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~l~~l~~L~ 704 (720)
.+..++. ..+.++++|+.+.+.. .+..+. ...+..+++|+.+.+.. +++.++...|.++++|+
T Consensus 307 -~i~~I~~-----------~aF~~c~~L~~i~lp~-~v~~I~--~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 307 -SVKFIGE-----------EAFESCTSLVSIDLPY-LVEEIG--KRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLK 369 (394)
T ss_dssp -TCCEECT-----------TTTTTCTTCCEECCCT-TCCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCC
T ss_pred -ccceech-----------hhhcCCCCCCEEEeCC-cccEEh--HHhccCCCCCCEEEECc--cccEehHHHhhCCCCCC
Confidence 1222221 1244566777666531 122221 12345556788888763 37777777888888888
Q ss_pred eeeecC
Q 038398 705 KLYVAG 710 (720)
Q Consensus 705 ~L~l~~ 710 (720)
.++|.+
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 888743
No 230
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.32 E-value=0.0007 Score=71.44 Aligned_cols=123 Identities=19% Similarity=0.204 Sum_probs=69.0
Q ss_pred ccccccceeEEEecccccccCCC--CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCc------------
Q 038398 489 EIQNWRNVRRMSLMKNKIENLSE--TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLW------------ 554 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~------------ 554 (720)
.|.++.+|+.+.+.. .+..+.. +.+|++|+.+.+..+ ++.+....|.++..|+.+.+..+ ...
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 466778888888864 3554443 467788888888654 55566566666666666555432 110
Q ss_pred ----------cCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCcee
Q 038398 555 ----------KLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVL 617 (720)
Q Consensus 555 ----------~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L 617 (720)
.-...|.++.+|+.+.+..+ ++.++. .|.++.+|+.+.+..+ +..++...+..+..|+.+
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENM 213 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBC
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcccccccee
Confidence 01233556667777777543 333432 3666667776666542 344444334444444433
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.31 E-value=0.00014 Score=64.93 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-..++|+|+.|+|||||++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999877
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.26 E-value=0.0013 Score=64.56 Aligned_cols=170 Identities=16% Similarity=0.164 Sum_probs=87.4
Q ss_pred CCCcCchHHHHHHHHHh---cC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCL---GE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.+..+.++.+.. .. .-.+-+.|+|++|+||||||+.++... .. ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 56789887666654433 21 112338999999999999999999876 21 22333211
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc-cCcEEEEEeccccccc----------------cccccccCCCCC-
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG-KKKFLLLLDDIWERVD----------------LTKVGIPFPDPE- 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~----------------~~~l~~~~~~~~- 255 (720)
.+ .... ..........+.+... ..+.++++|+++.... ...+...+....
T Consensus 84 ~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 0011122223333332 3568999999853210 111111111111
Q ss_pred -CCcEEEEEcCChhHhhh-h----ccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 256 -NKSKIVFTTHFLEICGA-L----KAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 256 -~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
....++.||....+... . .-...+.++..+.++-.+++...+.......... ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 22334445655544221 1 1235678888888888888877654322122222 345667777754
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.25 E-value=0.0027 Score=69.72 Aligned_cols=45 Identities=33% Similarity=0.438 Sum_probs=35.1
Q ss_pred CCcCchHHHHHHHHHhc------CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLG------EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+|.++..+.+.+.+. .-...++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46898888777755432 1235689999999999999999999886
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.20 E-value=0.00046 Score=79.45 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=42.8
Q ss_pred CCCcCchHHHHHHHHHhcC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 126 EPTVGLESTFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 4579999999888877742 1223799999999999999999998862 1122345555543
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.18 E-value=0.0037 Score=62.30 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=87.8
Q ss_pred CCCcCchHHHHHHHHHh---cC---------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 126 EPTVGLESTFDKVWRCL---GE---------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
++++|.++.++++.+.. .. .-.+-|.|+|++|+||||||+.++... .. ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 56789988776665443 11 112238999999999999999999876 21 22333221
Q ss_pred HHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEecccccc------------c----cccccccCCCCC-
Q 038398 194 KIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERV------------D----LTKVGIPFPDPE- 255 (720)
Q Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~~- 255 (720)
.+ .... ..........+.+.. ...+.++++|+++... . +..+...+....
T Consensus 108 ~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HH----HHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HH----HHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 000111222222322 2356899999985310 0 111111111111
Q ss_pred -CCcEEEEEcCChhHhhh-----hccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcc
Q 038398 256 -NKSKIVFTTHFLEICGA-----LKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLP 323 (720)
Q Consensus 256 -~gs~iiiTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 323 (720)
....++.||....+... ..-...+.++..+.++-.+++..++.......... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 12234445555443211 12335688888898888888887664322122222 345667777754
No 236
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.17 E-value=0.00021 Score=63.44 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=33.7
Q ss_pred CCcCchHHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|++..++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999988888777643 233457899999999999999998765
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.13 E-value=0.0022 Score=73.87 Aligned_cols=151 Identities=12% Similarity=0.112 Sum_probs=83.3
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
++++|.+..++++.+++.. .....|.|+|++|+||||||+.++... ...| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 4568999988888777631 234679999999999999999998875 2222 3333211
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHH-HHHHHHhccCcEEEEEeccccccc-------------cccccccCC--CCCC
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKT-SDILRILGKKKFLLLLDDIWERVD-------------LTKVGIPFP--DPEN 256 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~ 256 (720)
+... ......... ..+.......+.++++|+++.... ...+...+. ....
T Consensus 274 ----------l~~~----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 ----------IMSK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ----------HSSS----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred ----------hhhh----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 1000 011111222 222233345678999999853210 011111111 1122
Q ss_pred CcEEEEEcCChhHh-hhh----ccCceeeccCCChhhHHHHHHHHhccC
Q 038398 257 KSKIVFTTHFLEIC-GAL----KAHEFLKVECLGPEDAWRLFRENLRRD 300 (720)
Q Consensus 257 gs~iiiTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 300 (720)
+..+|.||...... ... .-...+.+...+.++-.+++...+...
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 34556566543221 111 122456788888899999988776543
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.90 E-value=0.0022 Score=61.33 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC-------ccCCCCh---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE-------SWKNGSL--- 215 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~--- 215 (720)
.-.++.|+|++|+||||||..++. . .-..++|++.....+...+.. +....+.... -......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346899999999999999999987 2 113688888766555555443 3333222100 0011112
Q ss_pred hHHHHHHHHHhccCcEEEEEecccc
Q 038398 216 EDKTSDILRILGKKKFLLLLDDIWE 240 (720)
Q Consensus 216 ~~~~~~l~~~l~~k~~LlVlDdv~~ 240 (720)
.+....++..+..+.-++|+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2344444444444577999998753
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.89 E-value=0.0006 Score=68.07 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=45.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEe--cCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHH
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVV--SKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRI 225 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 225 (720)
+++.|+|++|+||||||.+++... . ..++|++. ... +.. ...+.++....+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIARA 179 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhh-------------hhh-----hhcCHHHHHHHHHHH
Confidence 577899999999999999998752 1 12456666 221 110 013456666667777
Q ss_pred hccCcEEEEEecccc
Q 038398 226 LGKKKFLLLLDDIWE 240 (720)
Q Consensus 226 l~~k~~LlVlDdv~~ 240 (720)
+.+.+ ++|+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 77767 999999854
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.66 E-value=0.0045 Score=60.09 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCC----CcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC----c---cCCCCh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPN----VFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE----S---WKNGSL 215 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 215 (720)
-.++.|+|++|+|||||++.++... .... .-..++|+.....+....+. .++..++.... . ....+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 4699999999999999999998753 1111 13578898877655544443 34444443210 0 011222
Q ss_pred hH---HHHHHHHHhc-cCcEEEEEecccc
Q 038398 216 ED---KTSDILRILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 216 ~~---~~~~l~~~l~-~k~~LlVlDdv~~ 240 (720)
.+ ....+.+.+. .+.-++|+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2233444444 3667889998754
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.65 E-value=0.0046 Score=63.32 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDIL 223 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 223 (720)
-.++.|.|++|+||||||.+++.... ..=..++|++.....+.. .++.++..... ....+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 47999999999999999999987752 111357888776666543 45555543221 12345556666666
Q ss_pred HHhc-cCcEEEEEecccc
Q 038398 224 RILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 224 ~~l~-~k~~LlVlDdv~~ 240 (720)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4556899998754
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.0089 Score=62.47 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=80.8
Q ss_pred cccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCC
Q 038398 490 IQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLE 567 (720)
Q Consensus 490 ~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 567 (720)
+..+.++..+.+..+ +..+. .+..+..|+.+.+..+ ++.+....|.++.+|+.+.+..+ ....-...|.++.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334455666655433 22222 2356777777777665 55666666777788888887655 3333344567778888
Q ss_pred EEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhccccCceeecc
Q 038398 568 HLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAFSKLQVLRMF 620 (720)
Q Consensus 568 ~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~ 620 (720)
.+.+.++.++.++. .|.++.+|+.+.+.. .++.++...+.++++|+.+.+-
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 88887777777754 377778888888754 3566766667777777776653
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.46 E-value=0.0038 Score=71.88 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=37.2
Q ss_pred CCCcCchHHHHHHHHHhcC---------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999888777632 123478999999999999999999886
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.46 E-value=0.0031 Score=73.49 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=36.5
Q ss_pred CCcCchHHHHHHHHHhcC---------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLGE---------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988888777632 123588999999999999999999876
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.45 E-value=0.0025 Score=64.45 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=32.3
Q ss_pred CCCcC----chHHHHHHHHHhcCC---CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVG----LESTFDKVWRCLGEE---QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vG----r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++|++ +...++.+.+++..- ....+.|+|++|+|||+||+.+++..
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45554 333444555555431 24688999999999999999999876
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.44 E-value=0.0079 Score=61.77 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 222 (720)
.-.++.|+|++|+||||||.+++.... ..=..++|++.....+.. .+..++..... ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 347899999999999999999886652 112368899887766543 24555543221 1223455555555
Q ss_pred HHHhcc-CcEEEEEecccc
Q 038398 223 LRILGK-KKFLLLLDDIWE 240 (720)
Q Consensus 223 ~~~l~~-k~~LlVlDdv~~ 240 (720)
...... +.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 544443 466999999854
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.40 E-value=0.014 Score=59.91 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCC----CcCEEEEEEecCcCCHHHHHHHHHHHhCC
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPN----VFDVVIWVVVSKDLQLEKIQEKIGRRIGF 205 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~ 205 (720)
.-.++.|+|++|+||||||..++... .... .-..++|++....++...+.+ ++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 34789999999999999999998764 1111 234789999888777666543 3445543
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.40 E-value=0.01 Score=60.42 Aligned_cols=91 Identities=14% Similarity=0.304 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCC----CcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc-------cCCCCh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPN----VFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES-------WKNGSL 215 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 215 (720)
-.++.|+|++|+||||||.+++.... ... .-..++|++....++...+.+ ++..++..... ....+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~-~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQ-LPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 46899999999999999999987651 111 024789998887776666553 34555443210 011222
Q ss_pred h---HHHHHHHHHhc--cCcEEEEEeccc
Q 038398 216 E---DKTSDILRILG--KKKFLLLLDDIW 239 (720)
Q Consensus 216 ~---~~~~~l~~~l~--~k~~LlVlDdv~ 239 (720)
+ +....+...+. .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23344455554 345688888874
No 249
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.38 E-value=0.011 Score=62.06 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=32.9
Q ss_pred hccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCCcCCCCCchhhhhccccC
Q 038398 536 FQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYMNNLNQFPRLVISAFSKL 614 (720)
Q Consensus 536 ~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~l~~L 614 (720)
|.++..|+.+.+..+ ....-...+.++..|+.+.+. +.++.++.. |.++.+|+.+.+.. .++.++...+..+++|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence 444444444444433 222222334444444444443 233333322 44444444444432 2334444444444444
Q ss_pred ceeec
Q 038398 615 QVLRM 619 (720)
Q Consensus 615 ~~L~~ 619 (720)
+.+.+
T Consensus 337 ~~i~i 341 (394)
T 4gt6_A 337 ERIAI 341 (394)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 44443
No 250
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.36 E-value=0.0073 Score=68.49 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=78.5
Q ss_pred CCCcCchHHHHHHHHHhcC-------------CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH
Q 038398 126 EPTVGLESTFDKVWRCLGE-------------EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL 192 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 192 (720)
..+.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++.. ... ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEecc----
Confidence 4567888888887766521 124568899999999999999999987 222 333321
Q ss_pred HHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh-ccCcEEEEEeccccccc----------------cccccccCC--C
Q 038398 193 EKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL-GKKKFLLLLDDIWERVD----------------LTKVGIPFP--D 253 (720)
Q Consensus 193 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~ 253 (720)
.+ ++... .. ..+.....+.+.. +..+++|+||+++.... ...+...+. .
T Consensus 545 ~~----l~s~~-------vG-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PE----LLTMW-------FG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HH----HHTTT-------CS-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ch----hhccc-------cc-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 11 11111 11 2233444444444 34789999999864210 011111111 1
Q ss_pred CCCCcEEEEEcCChhH-----hhhhccCceeeccCCChhhHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCc
Q 038398 254 PENKSKIVFTTHFLEI-----CGALKAHEFLKVECLGPEDAWRLFRENLRRDVLDNHPDIPELARSVAQECAGL 322 (720)
Q Consensus 254 ~~~gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 322 (720)
...+--||.||..... ...-.-...+.++..+.++-.++|+.++.......+.+ ...+++.+.|+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 1122223334533222 11112345677877777777788877665433222223 34455566654
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.36 E-value=0.0012 Score=63.01 Aligned_cols=112 Identities=14% Similarity=-0.069 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRIL 226 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 226 (720)
-.++.|+|+.|+||||++..+..+.. .+-..++.+....+. . -...++..++............+..+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 46889999999999999998888762 222234444433221 1 11234444444322211223334444444444
Q ss_pred ccCc-EEEEEeccccc--cccccccccCCCCCCCcEEEEEcCCh
Q 038398 227 GKKK-FLLLLDDIWER--VDLTKVGIPFPDPENKSKIVFTTHFL 267 (720)
Q Consensus 227 ~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~iiiTtR~~ 267 (720)
.+.+ -+||+|.+... ..++.+. .+.. .|..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 3344 49999998642 2222221 1111 267788888743
No 252
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.35 E-value=0.002 Score=59.52 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc---CCHHHHHHHHHHHhCCCC----CccC--CCC---
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD---LQLEKIQEKIGRRIGFFD----ESWK--NGS--- 214 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~i~~~l~~~~----~~~~--~~~--- 214 (720)
...|.|++..|.||||.|-...-+.. ++=-.+.++..-+. .+...++.. +.... ..+. ..+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHH
Confidence 35677777788999999988877662 22224556654332 223333333 32100 0111 101
Q ss_pred ----hhHHHHHHHHHhccCcE-EEEEeccccc-----cccccccccCCCCCCCcEEEEEcCChh
Q 038398 215 ----LEDKTSDILRILGKKKF-LLLLDDIWER-----VDLTKVGIPFPDPENKSKIVFTTHFLE 268 (720)
Q Consensus 215 ----~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~iiiTtR~~~ 268 (720)
.......+++.+.+.+| |||||++-.. ...+.+...+........||+|+|+..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 12233344555555555 9999998432 222222222223334678999999853
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.28 E-value=0.011 Score=60.96 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---cCCCChhHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES---WKNGSLEDKTSDIL 223 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 223 (720)
-.++.|.|++|+||||||.+++..... .-..++|++....++.. .+..++..... ....+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 468999999999999999998876521 12368899887766543 24455543221 12234556666666
Q ss_pred HHhcc-CcEEEEEecccc
Q 038398 224 RILGK-KKFLLLLDDIWE 240 (720)
Q Consensus 224 ~~l~~-k~~LlVlDdv~~ 240 (720)
...+. ..-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 55543 455999999853
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.28 E-value=0.009 Score=61.40 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (720)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++...+.+ ...+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 3468999999999999999998876521 12368899887766643 244555432211 122344444444
Q ss_pred HHHhc-cCcEEEEEecccc
Q 038398 223 LRILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~~ 240 (720)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 44433 3455999999743
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.26 E-value=0.01 Score=58.91 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=56.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHH-HHHHH
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDK-TSDIL 223 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 223 (720)
.++-|.|++|+||||||.+++..... ...=..++||+....++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999998776521 1112478899887776653 366777654321 23344454 33332
Q ss_pred HH--h-ccCcEEEEEeccccc
Q 038398 224 RI--L-GKKKFLLLLDDIWER 241 (720)
Q Consensus 224 ~~--l-~~k~~LlVlDdv~~~ 241 (720)
.. + .++.-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 2 346789999998653
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.26 E-value=0.004 Score=58.62 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHhcC---CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 130 GLESTFDKVWRCLGE---EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|++.++++.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677778777754 345799999999999999999998765
No 257
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.24 E-value=0.012 Score=61.93 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCCCEEeccCCCCcccch-hhhcCCCCC
Q 038398 512 TPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSLEHLDLSSTAITHLPI-ELQKLVNLK 590 (720)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~ 590 (720)
+.+|.+|+.+.+..+ +..+....|.+++.|+.+.+..+ ....-...|.++.+|+.+.+..+ ++.++. .|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 467778888887655 33556666788888888888654 43333456778888888888754 666643 478888888
Q ss_pred EEeccCCcCCCCCchhhhhccccCceeeccc
Q 038398 591 CLNLEYMNNLNQFPRLVISAFSKLQVLRMFD 621 (720)
Q Consensus 591 ~L~l~~~~~l~~lp~~~~~~l~~L~~L~~~~ 621 (720)
.+.+.. .++.++...+.++++|+.+.+.+
T Consensus 338 ~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 338 RIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred EEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 888864 46778777788888888887654
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.20 E-value=0.033 Score=57.24 Aligned_cols=161 Identities=11% Similarity=-0.087 Sum_probs=94.0
Q ss_pred HHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHH
Q 038398 140 RCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKT 219 (720)
Q Consensus 140 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 219 (720)
+.+...-.++..++|+.|.||++.|+.+.+... ...|+....+.+....++.++.
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~----------------------- 65 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIF----------------------- 65 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHH-----------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHH-----------------------
Confidence 334323457899999999999999999887651 1233322122222233333322
Q ss_pred HHHHH-HhccCcEEEEEecccc---ccccccccccCCCCCCCcEEEEEcCC-------hhHhhh-hccCceeeccCCChh
Q 038398 220 SDILR-ILGKKKFLLLLDDIWE---RVDLTKVGIPFPDPENKSKIVFTTHF-------LEICGA-LKAHEFLKVECLGPE 287 (720)
Q Consensus 220 ~~l~~-~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~iiiTtR~-------~~v~~~-~~~~~~~~l~~L~~~ 287 (720)
+.+.. -+-+++-++|+|+++. ...+..+...+.....++.+|++|.. ..+... ......++..+++.+
T Consensus 66 ~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~ 145 (343)
T 1jr3_D 66 SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA 145 (343)
T ss_dssp HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence 22221 1234566888899865 23344443333333456777766532 123322 233467899999999
Q ss_pred hHHHHHHHHhccCccCCCCChHHHHHHHHHHhCCcchHHHH
Q 038398 288 DAWRLFRENLRRDVLDNHPDIPELARSVAQECAGLPLALIT 328 (720)
Q Consensus 288 e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 328 (720)
+....+...+...... --.+.+..+++.++|.+..+..
T Consensus 146 ~l~~~l~~~~~~~g~~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLE---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHHTTCE---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHhchHHHHHHH
Confidence 9998888876543211 1246678899999998776644
No 259
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.10 E-value=0.015 Score=55.96 Aligned_cols=47 Identities=28% Similarity=0.236 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
-.+++|.|++|+|||||++.++.... ..-..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEccc--CHHHHHHH
Confidence 36899999999999999999986541 1112466665433 34444443
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.05 E-value=0.0054 Score=58.05 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 133 STFDKVWRCLGE--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 133 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+++|.+.+.. ....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355666666653 345799999999999999999998766
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.89 E-value=0.016 Score=58.97 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCC-----------CCCc--CEEEEEEecCcCCHHHHHHHHHHHhCCCCCc---
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGA-----------PNVF--DVVIWVVVSKDLQLEKIQEKIGRRIGFFDES--- 209 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~--- 209 (720)
.-.++.|+|++|+||||||.+++...... .+.. ..++|++....++...+.+. +..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 34789999999999999999988653100 0101 47899988887777666543 4555543210
Q ss_pred ----cCCCChh---HHHHHHHHHhcc--CcEEEEEeccc
Q 038398 210 ----WKNGSLE---DKTSDILRILGK--KKFLLLLDDIW 239 (720)
Q Consensus 210 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 239 (720)
....+.+ +....+...+.. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112222 233344444443 34578888764
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.88 E-value=0.041 Score=57.79 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998776
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.80 E-value=0.0063 Score=62.33 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|++..++.+...+..+ ..+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999988877653 468899999999999999999876
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.76 E-value=0.0052 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999886
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.75 E-value=0.0053 Score=56.37 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999886
No 266
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.70 E-value=0.0046 Score=63.88 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.++|.+..++.+..........-|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 5689999876665444433333458899999999999999999876
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.70 E-value=0.023 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|.|.|++|+||||.|+.+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.64 E-value=0.0059 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 554
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.61 E-value=0.043 Score=57.19 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCC---CCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCc-------cCCCChh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGA---PNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDES-------WKNGSLE 216 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~ 216 (720)
-.++.|+|++|+|||||+..++-..... ...-..++|++....+....+. .+++.++..... ....+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 4699999999999999999776433110 1123468898877665555443 355665543210 0111222
Q ss_pred ---HHHHHHHHHhc-cCcEEEEEecccc
Q 038398 217 ---DKTSDILRILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 217 ---~~~~~l~~~l~-~k~~LlVlDdv~~ 240 (720)
+....+...+. .+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22233333333 3567888898643
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.58 E-value=0.0088 Score=64.38 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=37.6
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|+++.++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999999888877544 468899999999999999999876
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.57 E-value=0.012 Score=61.06 Aligned_cols=44 Identities=25% Similarity=0.183 Sum_probs=36.2
Q ss_pred CcCchHHHHHHHHHhc-------------C--CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 128 TVGLESTFDKVWRCLG-------------E--EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 128 ~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5899999988887772 1 134578999999999999999999886
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.56 E-value=0.03 Score=57.45 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCc----CEEEEEEecCcCCHHHHHHHHHHHhCCCCCc------c-CCC-
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVF----DVVIWVVVSKDLQLEKIQEKIGRRIGFFDES------W-KNG- 213 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~------~-~~~- 213 (720)
.-.++.|+|++|+|||||+..++... ...... ..++|++....+....+ ..+.+..+..... . ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 34799999999999999999998765 111111 25588887655433333 3344444332100 0 001
Q ss_pred --ChhHHHHHHHHHhc------cCcEEEEEecccc
Q 038398 214 --SLEDKTSDILRILG------KKKFLLLLDDIWE 240 (720)
Q Consensus 214 --~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 240 (720)
...+....+...+. .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 11233444444454 3677899998754
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.53 E-value=0.0074 Score=56.63 Aligned_cols=26 Identities=42% Similarity=0.367 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|+|++|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 274
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.53 E-value=0.029 Score=58.48 Aligned_cols=118 Identities=12% Similarity=0.176 Sum_probs=87.6
Q ss_pred ccccccceeEEEecccccccCC--CCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCCCCccCCccccCCCCC
Q 038398 489 EIQNWRNVRRMSLMKNKIENLS--ETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNHLLWKLPSGISTLVSL 566 (720)
Q Consensus 489 ~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 566 (720)
.+..+..|+.+.+..+ +..+. .+.++.+|..+.+..+ ++.++...|.++.+|+.+.+.++.....-+..|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4566778888888765 44443 2467889999998755 667777779999999999998874443445678899999
Q ss_pred CEEeccCCCCcccch-hhhcCCCCCEEeccCCcCCCCCchhhhhcc
Q 038398 567 EHLDLSSTAITHLPI-ELQKLVNLKCLNLEYMNNLNQFPRLVISAF 611 (720)
Q Consensus 567 ~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~~~~~~l 611 (720)
+.+.|..+ ++.++. .|.++++|+.+.+.. .++.+....+.++
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c 355 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGS 355 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTS
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCC
Confidence 99999754 777754 488999999998864 3566665545444
No 275
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.011 Score=60.33 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc
Q 038398 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD 189 (720)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 189 (720)
++++.+.. ..-..++|+|++|+|||||++.+.+........+ .++++-+++.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v-~~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC-VLMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTS-EEEEEEESSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCe-eEEEEEecCC
Confidence 34555543 3447899999999999999998876541111223 3446777654
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.48 E-value=0.0073 Score=56.16 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+|+|+|++|+|||||++.+....
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999998753
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.46 E-value=0.014 Score=59.18 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=32.9
Q ss_pred cCchHHHHHHHHHhc----CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 129 VGLESTFDKVWRCLG----EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 129 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|+.+..++++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455666666666653 3456679999999999999999988775
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.46 E-value=0.0077 Score=55.49 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 279
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.44 E-value=0.0013 Score=61.01 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997776654
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.43 E-value=0.037 Score=55.25 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC-cCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK-DLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
...+|+|+|++|+||||++..++.......+ ..+.++.... .....+.+.......+.+.. ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 3579999999999999999998876621111 2355555432 22333334444444443321 1122333333333
Q ss_pred HhccCcEEEEEec
Q 038398 225 ILGKKKFLLLLDD 237 (720)
Q Consensus 225 ~l~~k~~LlVlDd 237 (720)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 33 3445788884
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.43 E-value=0.047 Score=55.22 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
.-.++.|.|.+|+||||+|..++.... ..+ ..++|++.. .+..++...+....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999999987652 222 577887654 56677777766543
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.42 E-value=0.0084 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 283
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.41 E-value=0.014 Score=60.79 Aligned_cols=45 Identities=24% Similarity=0.203 Sum_probs=35.5
Q ss_pred CCcCchHHHHHHHHHhc------------------------------CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLG------------------------------EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46899888888876661 0123568899999999999999999876
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.41 E-value=0.007 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|+|++|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.41 E-value=0.0082 Score=55.49 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 286
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.32 E-value=0.0094 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.28 E-value=0.011 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|+|++|+||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998876
No 288
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.27 E-value=0.13 Score=54.19 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=45.9
Q ss_pred HHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHH
Q 038398 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRR 202 (720)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~ 202 (720)
++++.+.. ..-..++|+|.+|+|||+|+..+.+... +.+-+.++|+-++... ...++.+++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 35555543 3447899999999999999999988752 3445677888887643 466777777655
No 289
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.24 E-value=0.029 Score=48.35 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=33.5
Q ss_pred EEEecccccc--cCCCCCCCCcccEEEccCCCCcCcchHHhccCCcccEEEccCCC
Q 038398 498 RMSLMKNKIE--NLSETPTCPHLLSLFLSDNSLKMSTDDFFQSMPSLRVFNMSNNH 551 (720)
Q Consensus 498 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 551 (720)
+++.+++.++ .+|.. -.++|+.|+|++|.++.++...|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4556666665 55432 12357777777777777776667777777777777764
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.21 E-value=0.011 Score=55.02 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.20 E-value=0.08 Score=55.60 Aligned_cols=26 Identities=38% Similarity=0.307 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.++|++|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988776
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.19 E-value=0.0078 Score=55.48 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.|.|.||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998775
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.18 E-value=0.046 Score=54.78 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCH--HHHHHHHHHHhCCCCCc-cCCCChhHH-HHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQL--EKIQEKIGRRIGFFDES-WKNGSLEDK-TSD 221 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 221 (720)
...+|+|+|++|+||||++..++.... . .-..+.++... .+.. .+-+...+...+.+.-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~--~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--EGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--TTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-h--cCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999987762 1 11235555442 2222 12233445555433211 011222222 223
Q ss_pred HHHHhccCcEEEEEeccc
Q 038398 222 ILRILGKKKFLLLLDDIW 239 (720)
Q Consensus 222 l~~~l~~k~~LlVlDdv~ 239 (720)
+...+....-++|+|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444454555588889653
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.18 E-value=0.0085 Score=56.34 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.18 E-value=0.011 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+|||||++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998775
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.17 E-value=0.015 Score=55.57 Aligned_cols=38 Identities=32% Similarity=0.385 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 134 TFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 134 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+.+...+.......|.|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444444567889999999999999999998875
No 297
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.14 E-value=0.1 Score=52.73 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|+|+.|+||||+++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999988765
No 298
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.13 E-value=0.013 Score=54.09 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44789999999999999999998876
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.12 E-value=0.012 Score=54.60 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 300
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.10 E-value=0.01 Score=54.58 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.10 E-value=0.012 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.08 E-value=0.03 Score=59.01 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=50.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHHhCCCCC----ccCCCChhH-H---
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRRIGFFDE----SWKNGSLED-K--- 218 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~-~--- 218 (720)
..++|+|.+|+|||||+..+..... ...-+.++++.+++.. ...++..++...-..... .....+... .
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999887651 1122455667776543 344555555432100000 001111111 1
Q ss_pred --HHHHHHHh---ccCcEEEEEeccc
Q 038398 219 --TSDILRIL---GKKKFLLLLDDIW 239 (720)
Q Consensus 219 --~~~l~~~l---~~k~~LlVlDdv~ 239 (720)
.-.+.+++ +++++|+++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11233433 4789999999984
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.08 E-value=0.012 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 304
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.07 E-value=0.012 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999998764
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.06 E-value=0.012 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.04 E-value=0.01 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999887
No 307
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.02 E-value=0.048 Score=52.77 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEK 198 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 198 (720)
-.++.|.|++|+||||||.+++..... .-..++|++... ...++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHH
Confidence 368999999999999999888765411 123577776543 33444433
No 308
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.01 E-value=0.014 Score=55.27 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.|.|++|+||||.|+.+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 309
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.00 E-value=0.014 Score=55.17 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998876
No 310
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.99 E-value=0.026 Score=56.26 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|+|+.|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999987766
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.98 E-value=0.013 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.98 E-value=0.011 Score=54.87 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 313
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.98 E-value=0.013 Score=53.68 Aligned_cols=23 Identities=52% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.95 E-value=0.012 Score=55.49 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998876
No 315
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.94 E-value=0.014 Score=54.32 Aligned_cols=26 Identities=38% Similarity=0.378 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.94 E-value=0.016 Score=55.18 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 132 ESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 132 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444555555544567899999999999999999998875
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.93 E-value=0.014 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
...|+|+|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.015 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.92 E-value=0.014 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+|||||++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 320
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.92 E-value=0.043 Score=47.22 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=31.2
Q ss_pred EEEccCCCCC-ccCCccccCCCCCCEEeccCCCCcccchh-hhcCCCCCEEeccCC
Q 038398 544 VFNMSNNHLL-WKLPSGISTLVSLEHLDLSSTAITHLPIE-LQKLVNLKCLNLEYM 597 (720)
Q Consensus 544 ~L~L~~~~~~-~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~ 597 (720)
+++.+++.+. ..+|..+. .+|++|+|++|.|+.+|.. |..+++|+.|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5566655332 15554432 3567777777777777654 566777777777663
No 321
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.91 E-value=0.014 Score=54.80 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 322
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.90 E-value=0.022 Score=56.75 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998875
No 323
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.88 E-value=0.016 Score=54.40 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|++|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998875
No 324
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.88 E-value=0.014 Score=55.87 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|+|++|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 325
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.86 E-value=0.011 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.85 E-value=0.012 Score=60.46 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCC
Q 038398 129 VGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDE 208 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~ 208 (720)
+|....+..+ +. ..-.+|+|+|+.|+|||||++.+..... ......+ +.+.+..... .. ........
T Consensus 109 lg~~~~l~~l---~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i-~t~ed~~e~~--~~---~~~~~v~q 175 (356)
T 3jvv_A 109 LGMGEVFKRV---SD-VPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHI-LTIEDPIEFV--HE---SKKCLVNQ 175 (356)
T ss_dssp TTCCHHHHHH---HH-CSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEE-EEEESSCCSC--CC---CSSSEEEE
T ss_pred cCChHHHHHH---Hh-CCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEE-EEccCcHHhh--hh---ccccceee
Confidence 4554444333 22 3345999999999999999999876541 1111122 2222221100 00 00000000
Q ss_pred ccCCCChhHHHHHHHHHhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhHh
Q 038398 209 SWKNGSLEDKTSDILRILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEIC 270 (720)
Q Consensus 209 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v~ 270 (720)
.............+...|...+=+|++|++.+.+.+..+... ...|..|++||......
T Consensus 176 ~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 176 REVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred eeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 001112234455788888899999999999865544432221 12366788888765544
No 327
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.84 E-value=0.018 Score=60.60 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred CCCcCchHHHHHHHHHhcC--------------CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGE--------------EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.++.++.+..++.. -..+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999888888665521 124568999999999999999999887
No 328
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.82 E-value=0.017 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999864
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.82 E-value=0.016 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.82 E-value=0.015 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.82 E-value=0.14 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|+|++|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998877
No 332
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.81 E-value=0.016 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 333
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.81 E-value=0.23 Score=50.27 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
-.++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 368999999999999999999877621 2235667654 456677777766543
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.79 E-value=0.015 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998765
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.76 E-value=0.016 Score=54.11 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 336
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.76 E-value=0.08 Score=55.90 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=62.5
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHHhCCC-------CC
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRRIGFF-------DE 208 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~-------~~ 208 (720)
+++.|.. ..-..++|.|.+|+|||+|+..+.+... +.+-+.++|+-++... ...++.+++...=... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4455543 3346799999999999999999988752 3455778888887654 5667777776542221 00
Q ss_pred ----ccCCCChh------HHHHHHHHHhc---cCcEEEEEeccc
Q 038398 209 ----SWKNGSLE------DKTSDILRILG---KKKFLLLLDDIW 239 (720)
Q Consensus 209 ----~~~~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~ 239 (720)
...+.... ...-.+.++++ ++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111111 12233445554 479999999984
No 337
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.74 E-value=0.12 Score=51.45 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc-CCHHHHHHHHHHHhCCCCCc-cCCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD-LQLEKIQEKIGRRIGFFDES-WKNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 224 (720)
..+|+++|.+|+||||++..++.... ..-..+.++..... ......++......+.+.-. ....+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57899999999999999999887762 11124556654322 22233344445555443211 012344444444444
Q ss_pred HhccCcE-EEEEecc
Q 038398 225 ILGKKKF-LLLLDDI 238 (720)
Q Consensus 225 ~l~~k~~-LlVlDdv 238 (720)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4542333 7777864
No 338
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.73 E-value=0.014 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 339
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.71 E-value=0.015 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKIN 168 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~ 168 (720)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 340
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.70 E-value=0.015 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.69 E-value=0.018 Score=54.22 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34789999999999999999998754
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.69 E-value=0.016 Score=54.61 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 343
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.66 E-value=0.013 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 344
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.62 E-value=0.019 Score=53.32 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998765
No 345
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.62 E-value=0.019 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 346
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.61 E-value=0.029 Score=51.92 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCC-CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 133 STFDKVWRCLGEE-QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 133 ~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-+..+..++..- ....+.|+|++|+||||+|..+++..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455566666431 23479999999999999999998886
No 347
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.61 E-value=0.058 Score=66.80 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (720)
..++|.|+|++|+|||+||.++..... ..=..++|+++....+... ++.++.+.+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 457999999999999999999987762 2223578888777766555 44555332211 223344555555
Q ss_pred HHHhc-cCcEEEEEeccc
Q 038398 223 LRILG-KKKFLLLLDDIW 239 (720)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~ 239 (720)
....+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55544 467799999985
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.61 E-value=0.019 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.61 E-value=0.019 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 350
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.58 E-value=0.024 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998876
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.58 E-value=0.019 Score=53.81 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.55 E-value=0.022 Score=52.90 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998874
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.55 E-value=0.021 Score=56.09 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.52 E-value=0.022 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+++|.|+.|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 355
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.51 E-value=0.12 Score=66.47 Aligned_cols=79 Identities=27% Similarity=0.297 Sum_probs=49.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHHHhc
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILRILG 227 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 227 (720)
+-|.++|++|+|||++|+.+.... . .+ ..+.++.+...+...+++.+-..+...... ...... -.-.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~-~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~g~~~~-------P~~~ 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---S-LY-DVVGINFSKDTTTEHILSALHRHTNYVTTS-KGLTLL-------PKSD 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---S-SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET-TTEEEE-------EBSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---C-CC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc-CCcccc-------CCCC
Confidence 567899999999999998877654 1 22 456677777777777776666655321100 000000 0013
Q ss_pred cCcEEEEEeccc
Q 038398 228 KKKFLLLLDDIW 239 (720)
Q Consensus 228 ~k~~LlVlDdv~ 239 (720)
+++.++.+||+.
T Consensus 1335 gk~~VlFiDEin 1346 (2695)
T 4akg_A 1335 IKNLVLFCDEIN 1346 (2695)
T ss_dssp SSCEEEEEETTT
T ss_pred CceEEEEecccc
Confidence 678899999974
No 356
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.51 E-value=0.2 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++|.|+|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.51 E-value=0.032 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998876
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.48 E-value=0.019 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.48 E-value=0.02 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.44 E-value=0.021 Score=54.22 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.40 E-value=0.024 Score=55.40 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|++|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 362
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.39 E-value=0.022 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999876
No 363
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.38 E-value=0.075 Score=50.75 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCC--C-CCcCEEEEEEecCc
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGA--P-NVFDVVIWVVVSKD 189 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv~v~~~ 189 (720)
-.+++|+|++|+|||||++.++...... . ..-..++|+.....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4799999999999999999998743110 0 12346788765443
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.36 E-value=0.024 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.34 E-value=0.024 Score=57.15 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|.|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999998765
No 366
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.34 E-value=0.023 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998876
No 367
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.33 E-value=0.024 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.33 E-value=0.023 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998776
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.32 E-value=0.033 Score=56.13 Aligned_cols=43 Identities=26% Similarity=0.207 Sum_probs=29.7
Q ss_pred cCchHHHHHHHHHhcC----CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 129 VGLESTFDKVWRCLGE----EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 129 vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|-...+..+...+.. ....+|+|.|+.|+||||+|+.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444443322 245699999999999999999987765
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.29 E-value=0.018 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 371
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.28 E-value=0.025 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 372
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.26 E-value=0.027 Score=54.74 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998754
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.24 E-value=0.026 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 374
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.24 E-value=0.024 Score=57.09 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEec
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVS 187 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~ 187 (720)
++.+||+|.|-|||||||.+..+.--..+ .+ ..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~G--kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LG--KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH-CC--CeEEEEecC
Confidence 56799999999999999999887766621 11 235666655
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.20 E-value=0.026 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.15 E-value=0.026 Score=53.62 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998765
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.10 E-value=0.025 Score=54.00 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.03 E-value=0.029 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|+|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998875
No 379
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.01 E-value=0.068 Score=59.44 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=38.2
Q ss_pred CCCcCchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45799999998888888655 588999999999999999999876
No 380
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.99 E-value=0.02 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999988765
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.97 E-value=0.016 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.87 E-value=0.034 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998865
No 383
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.86 E-value=0.033 Score=53.22 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 384
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.80 E-value=0.16 Score=50.61 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=46.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC-HHHHHHHHHHHhCCCCCcc-CCCChhHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ-LEKIQEKIGRRIGFFDESW-KNGSLEDKTSDILR 224 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 224 (720)
..+++|+|.+|+||||++..++.... ..-..+.++...-... ....+.......+...-.. ...+..+.......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999987762 1112345554432211 1112333444444332110 12233344333333
Q ss_pred Hh-ccCcEEEEEecc
Q 038398 225 IL-GKKKFLLLLDDI 238 (720)
Q Consensus 225 ~l-~~k~~LlVlDdv 238 (720)
.+ ....=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 244457888875
No 385
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.78 E-value=0.029 Score=51.89 Aligned_cols=24 Identities=46% Similarity=0.517 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988765
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.75 E-value=0.037 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|.|+.|+||||+|+.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998775
No 387
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.73 E-value=0.035 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 388
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.73 E-value=0.036 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999987654
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.73 E-value=0.35 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|.|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.72 E-value=0.035 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.72 E-value=0.033 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999998873
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.68 E-value=0.038 Score=54.89 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.67 E-value=0.04 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+++|.|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998775
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.67 E-value=0.03 Score=54.33 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.67 E-value=0.038 Score=55.90 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.65 E-value=0.037 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.193 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 397
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.64 E-value=0.024 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHH-hhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKIN-NKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 171 (720)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 554
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.64 E-value=0.04 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINN 169 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~ 169 (720)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.64 E-value=0.038 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|.|++|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999887
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.60 E-value=0.039 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 401
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.59 E-value=0.065 Score=53.98 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|+|.|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 402
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.49 E-value=0.032 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999887544
No 403
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.48 E-value=0.033 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.47 E-value=0.033 Score=53.16 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987543
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.42 E-value=0.048 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|++|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 406
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.36 E-value=0.028 Score=56.07 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 407
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.35 E-value=0.25 Score=45.63 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=13.7
Q ss_pred HHHhcCCCCCceeEEEecch
Q 038398 643 VEELMGMKHLMVLTITLKSW 662 (720)
Q Consensus 643 ~~~l~~l~~L~~L~~~~~~~ 662 (720)
...+...+.|..|++.++..
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 44566777888888876654
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.33 E-value=0.046 Score=54.88 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.26 E-value=0.25 Score=52.52 Aligned_cols=52 Identities=10% Similarity=-0.061 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
-.++.|.|.+|+||||+|..++..... ..=..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 468999999999999999998877621 111357776554 4566777776544
No 410
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.15 E-value=0.039 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987653
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.14 E-value=0.053 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|.|.|+.|+||||||..++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 588999999999999999998876
No 412
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.14 E-value=0.051 Score=54.40 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998765
No 413
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.13 E-value=0.094 Score=53.97 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=28.5
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 135 FDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 135 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..++.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444455453 3467899999999999999999988765
No 414
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.10 E-value=0.041 Score=54.26 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.+.--.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999987543
No 415
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.07 E-value=0.31 Score=52.77 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRI 203 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l 203 (720)
-.++.|.|.+|+||||||..++.... . .+=..++|++. ..+..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEec--cCCHHHHHHHHHHHH
Confidence 46889999999999999999988772 1 11235777765 345667777665443
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.06 E-value=0.042 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987543
No 417
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.04 E-value=0.064 Score=56.04 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=57.3
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCC-CCcC-EEEEEEecCc-CCHHHHHHHHHHHhCCCCC----c
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP-NVFD-VVIWVVVSKD-LQLEKIQEKIGRRIGFFDE----S 209 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~v~~~-~~~~~~~~~i~~~l~~~~~----~ 209 (720)
.++.+.. ..-..++|.|..|+|||+|+.++.+.. ... ++-+ .++++-++.. ....++.+++...=..... .
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 3444433 233568899999999999999998876 221 1112 6677777654 4566666666543111100 0
Q ss_pred cCCCChhH------HHHHHHHHhc---cCcEEEEEeccc
Q 038398 210 WKNGSLED------KTSDILRILG---KKKFLLLLDDIW 239 (720)
Q Consensus 210 ~~~~~~~~------~~~~l~~~l~---~k~~LlVlDdv~ 239 (720)
..+..... ..-.+.+++. ++.+|+++||+-
T Consensus 220 tsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 01111111 1123445554 689999999984
No 418
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.02 E-value=0.05 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
-.+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 419
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.02 E-value=0.053 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.93 E-value=0.054 Score=54.55 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999876
No 421
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.93 E-value=0.038 Score=52.20 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 422
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.92 E-value=0.045 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 423
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.91 E-value=0.053 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 424
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.90 E-value=0.046 Score=52.36 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.89 E-value=0.046 Score=53.52 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999987543
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.89 E-value=0.098 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|++|+||||+++.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999988
No 427
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.87 E-value=0.046 Score=52.82 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 428
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.86 E-value=0.097 Score=56.03 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 130 GLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+....++.+..++..+. +.+.|.|++|+||||++..+....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44455566666665433 489999999999999999998876
No 429
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.83 E-value=0.046 Score=53.40 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 430
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.82 E-value=0.05 Score=52.68 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987543
No 431
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.82 E-value=0.097 Score=55.58 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999998765
No 432
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.78 E-value=0.048 Score=52.90 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987654
No 433
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.77 E-value=0.23 Score=50.68 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCc
Q 038398 136 DKVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKD 189 (720)
Q Consensus 136 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~ 189 (720)
-++++.+.. ..-..++|+|.+|+|||+|++.+.+........+ .++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv-~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDT-IRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTS-EEEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCe-EEEEEEeccC
Confidence 356666654 3446899999999999999998887641101122 2356666543
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.74 E-value=0.061 Score=52.60 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=56.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCccCCCChhHHHHHHHH
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESWKNGSLEDKTSDILR 224 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 224 (720)
..-.+++|+|+.|+|||||++.+..... ..+...+++.- ..... +.+.. ..+ ..... -..+.......+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g-~~i~~--~~~~~-~~~-v~q~~-~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE-DPIEY--VFKHK-KSI-VNQRE-VGEDTKSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEE-SSCCS--CCCCS-SSE-EEEEE-BTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcC-Cccee--ecCCc-cee-eeHHH-hCCCHHHHHHHHHH
Confidence 3447999999999999999999876541 11122332221 11000 00000 000 00000 00011233456666
Q ss_pred HhccCcEEEEEeccccccccccccccCCCCCCCcEEEEEcCChhH
Q 038398 225 ILGKKKFLLLLDDIWERVDLTKVGIPFPDPENKSKIVFTTHFLEI 269 (720)
Q Consensus 225 ~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~v 269 (720)
.+..++=+|++|+.-+.+........ ...|.-|++||....+
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 67667778999998644332222111 1236678888876543
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.72 E-value=0.065 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..+|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 436
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.71 E-value=0.035 Score=61.45 Aligned_cols=46 Identities=17% Similarity=0.038 Sum_probs=33.1
Q ss_pred CCCcCchHHHHHHHHHhcCCCce-----------EEEEEcCCCChHHHHHHHHHhhh
Q 038398 126 EPTVGLESTFDKVWRCLGEEQVG-----------IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 126 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.++|.+..+..+...+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34578887666665555433211 58899999999999999988765
No 437
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.71 E-value=0.057 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44789999999999999999987654
No 438
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.70 E-value=0.094 Score=52.75 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecC
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSK 188 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~ 188 (720)
...++|+|+|-||+||||+|..++....+ .+ ..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~G--~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LG--KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-CC--CeEEEEeCCC
Confidence 46789999999999999999998877631 11 2466666654
No 439
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.70 E-value=0.05 Score=53.00 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987643
No 440
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.68 E-value=0.068 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.60 E-value=0.064 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 442
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.60 E-value=0.052 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999987654
No 443
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.55 E-value=0.055 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 444
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.54 E-value=0.053 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 445
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.52 E-value=0.069 Score=49.15 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|.|++|+||||||..+..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998775
No 446
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.51 E-value=0.068 Score=49.81 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.|+|+|.+|+|||||++.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.47 E-value=0.065 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.47 E-value=0.065 Score=56.48 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 449
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.42 E-value=0.12 Score=55.57 Aligned_cols=45 Identities=11% Similarity=-0.085 Sum_probs=33.2
Q ss_pred CCcCchHHHHHHHHHhc--CCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 127 PTVGLESTFDKVWRCLG--EEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 127 ~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
+.+.|.+..+.+.+... .....+|.+.|++|+||||+|+.+....
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34556555555555542 2344789999999999999999999998
No 450
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.42 E-value=0.075 Score=54.42 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34699999999999999999998765
No 451
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.42 E-value=0.058 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.40 E-value=0.057 Score=53.35 Aligned_cols=25 Identities=44% Similarity=0.525 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 453
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.39 E-value=0.057 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987543
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.32 E-value=0.082 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 455
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.29 E-value=0.072 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.29 E-value=0.27 Score=61.03 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (720)
.-.++.|.|++|+||||||.+++..... .=..++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 3479999999999999999999887621 223688888777666432 55565533211 234556666666
Q ss_pred HHHhc-cCcEEEEEecccc
Q 038398 223 LRILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~~ 240 (720)
....+ .+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 55443 3566999998753
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.26 E-value=0.056 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998763
No 458
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.14 Score=47.16 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998764
No 459
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.19 E-value=0.35 Score=51.19 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRR 202 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~ 202 (720)
-.++.|.|.+|+||||+|..++.... .. =..++|++.. .+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMS-DN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHH-HT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHH-Hc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999987762 12 1357776544 3445555555543
No 460
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.12 E-value=0.2 Score=53.00 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=56.3
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHHH-HHHhhhcCCCCCcC-EEEEEEecCcC-CHHHHHHHHHHHhCCCCCc----
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLT-KINNKLLGAPNVFD-VVIWVVVSKDL-QLEKIQEKIGRRIGFFDES---- 209 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~---- 209 (720)
.++.+.. ..-..++|+|..|+|||+||. .+.+.. .-+ .++++-+++.. ...++.+.+...=......
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4555543 334678999999999999964 666654 245 45777777643 4566666666532221110
Q ss_pred cCCCChhHH------HHHHHHHh--ccCcEEEEEeccc
Q 038398 210 WKNGSLEDK------TSDILRIL--GKKKFLLLLDDIW 239 (720)
Q Consensus 210 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 239 (720)
..+...... .-.+.+++ .++.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 011111111 12233444 4689999999984
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.11 E-value=0.073 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.++.|+|++|+|||||+..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999988654
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.10 E-value=0.21 Score=61.12 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDKTSDIL 223 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 223 (720)
-++|-|+|+.|+||||||.++.... +..=..++|+......+..- ++.++...+.. ++...++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4799999999999999999998765 23335678888877766553 77777665432 3445567777777
Q ss_pred HHhcc-CcEEEEEecccc
Q 038398 224 RILGK-KKFLLLLDDIWE 240 (720)
Q Consensus 224 ~~l~~-k~~LlVlDdv~~ 240 (720)
..++. ..-++|+|-|-.
T Consensus 1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHcCCCCEEEEccHHh
Confidence 77765 455999998743
No 463
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.07 E-value=0.085 Score=49.39 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 130 GLESTFDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 130 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
|++...+.+.+.......-.|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444444444444445678899999999999999988654
No 464
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.05 E-value=0.077 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 038398 149 IIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 149 vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.|.|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998664
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.03 E-value=0.078 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999765
No 466
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.02 E-value=0.22 Score=52.24 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 145 EQVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 145 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..-.+|+|+|+.|+||||+++.+....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999998876
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.99 E-value=0.092 Score=51.33 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788899999999999999998776
No 468
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.93 E-value=0.25 Score=52.70 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHH
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIG 200 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~ 200 (720)
-.++.|.|.+|+||||||..++.... . ..-..++|++.. .+...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~-~-~~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVA-T-KTNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHH-H-HSSCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-H-hCCCcEEEEECC--CCHHHHHHHHH
Confidence 46899999999999999999987762 1 111257777644 34556666554
No 469
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.93 E-value=0.096 Score=52.86 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...+|+|+|++|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988776
No 470
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.90 E-value=0.16 Score=49.27 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCC-C-ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 134 TFDKVWRCLGEE-Q-VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 134 ~~~~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...-+..|+... . ...|.++|++|+|||++|.++++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344466666543 2 4579999999999999999999864
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.87 E-value=0.099 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 472
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.86 E-value=0.083 Score=47.28 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.|.|+|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 473
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.84 E-value=0.074 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
-.+++|+|+.|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988643
No 474
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.84 E-value=0.082 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|.|++|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988765
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.82 E-value=0.25 Score=60.47 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHHHHHHHHHHHhCCCCCcc---CCCChhHHHHHH
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLEKIQEKIGRRIGFFDESW---KNGSLEDKTSDI 222 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 222 (720)
.-+++.|.|++|+||||||.+++.... ..=..++|++.....+.. .+..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 347999999999999999999987762 122368898877766653 255565543221 233455555555
Q ss_pred HHHhc-cCcEEEEEecccc
Q 038398 223 LRILG-KKKFLLLLDDIWE 240 (720)
Q Consensus 223 ~~~l~-~k~~LlVlDdv~~ 240 (720)
..... .+.-++|+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 55443 3566999998854
No 476
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.81 E-value=0.15 Score=47.16 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=39.2
Q ss_pred CcccEEEccCC-CCcCc----chHHhccCCcccEEEccCCCCCcc----CCccccCCCCCCEEeccCCCCc-----ccch
Q 038398 516 PHLLSLFLSDN-SLKMS----TDDFFQSMPSLRVFNMSNNHLLWK----LPSGISTLVSLEHLDLSSTAIT-----HLPI 581 (720)
Q Consensus 516 ~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~----lp~~i~~l~~L~~L~L~~~~i~-----~lp~ 581 (720)
+.|+.|+|++| .+... ....+..-++|+.|+|++|.+... +...+..=..|++|+|++|.|+ .+-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555553 33221 112234445666666666643322 2222233355666666666665 2223
Q ss_pred hhhcCCCCCEEeccC
Q 038398 582 ELQKLVNLKCLNLEY 596 (720)
Q Consensus 582 ~i~~l~~L~~L~l~~ 596 (720)
.+..-+.|+.|+|++
T Consensus 121 aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 121 STLVTQSIVEFKADN 135 (197)
T ss_dssp HTTTTCCCSEEECCC
T ss_pred HHhhCCceeEEECCC
Confidence 344445566666654
No 477
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.81 E-value=0.084 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||.+.++--.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3689999999999999999998654
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.79 E-value=0.1 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 479
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.73 E-value=0.75 Score=48.52 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=55.3
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHH-HHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHHHHHhCCCCCc----c
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLL-TKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKIGRRIGFFDES----W 210 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~l~~~~~~----~ 210 (720)
.++.+.. ..-..++|.|..|+|||+|| ..+.+.. ..-..++|+-+++.. ...++.+.+...=...... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4444433 33467899999999999996 4565542 222256788888653 4566777665532221100 0
Q ss_pred CCCChh-HH-----HHHHHHHh--ccCcEEEEEeccc
Q 038398 211 KNGSLE-DK-----TSDILRIL--GKKKFLLLLDDIW 239 (720)
Q Consensus 211 ~~~~~~-~~-----~~~l~~~l--~~k~~LlVlDdv~ 239 (720)
.+.... +. .-.+.+++ +++.+||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 111111 11 11223333 4789999999984
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.71 E-value=0.1 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.293 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...++|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999877
No 481
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.70 E-value=0.063 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 44799999999999999999987643
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.70 E-value=0.22 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|-|+.|+||||+++.+.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.69 E-value=0.099 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 484
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.69 E-value=0.1 Score=54.43 Aligned_cols=101 Identities=10% Similarity=0.152 Sum_probs=57.0
Q ss_pred HHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCC--------CCcC-EEEEEEecCc-CCHHHHHHHHHHHhCCC
Q 038398 138 VWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAP--------NVFD-VVIWVVVSKD-LQLEKIQEKIGRRIGFF 206 (720)
Q Consensus 138 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~v~~~-~~~~~~~~~i~~~l~~~ 206 (720)
.++.+.. ..-..++|.|..|+|||+|+.++.+.. ... ++-+ .++++-++.. ....++.+++...=...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444433 233568899999999999999998875 221 1222 6677777654 45566666655421011
Q ss_pred C-----CccCCCChhHH-----HHHHHHHhc---cCcEEEEEeccc
Q 038398 207 D-----ESWKNGSLEDK-----TSDILRILG---KKKFLLLLDDIW 239 (720)
Q Consensus 207 ~-----~~~~~~~~~~~-----~~~l~~~l~---~k~~LlVlDdv~ 239 (720)
. ........... .-.+.+++. ++.+|+++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 00011112211 123445554 689999999984
No 485
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.63 E-value=0.21 Score=50.67 Aligned_cols=48 Identities=27% Similarity=0.303 Sum_probs=34.0
Q ss_pred cCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCCHH
Q 038398 143 GEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQLE 193 (720)
Q Consensus 143 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 193 (720)
.+...+++.+.|.||+||||+|..++.... ..=..++-|+.....++.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChh
Confidence 344567888999999999999999988872 222356677666544433
No 486
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.63 E-value=0.52 Score=50.29 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=41.4
Q ss_pred HHHHHhcC-CCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcC-CHHHHHHHH
Q 038398 137 KVWRCLGE-EQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDL-QLEKIQEKI 199 (720)
Q Consensus 137 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i 199 (720)
++++.+.. ..-..++|.|..|+|||+|+..+.+.. +-+.++++-+++.. ...++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 35555543 344789999999999999999987754 23578888888654 455666554
No 487
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.62 E-value=0.18 Score=51.38 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=33.0
Q ss_pred hcCCCceEEEEEcCCCChHHHHHHHHHhhhcCCCCCcCEEEEEEecCcCC
Q 038398 142 LGEEQVGIIGLYGMGGVGKTTLLTKINNKLLGAPNVFDVVIWVVVSKDLQ 191 (720)
Q Consensus 142 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v~~~~~ 191 (720)
+.....+++.+.|.||+||||+|..++..... ...=..+.-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCC
Confidence 33455689999999999999999998877620 01223466666654433
No 488
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.62 E-value=0.19 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
...|.|.|+.|+||||+++.+.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
No 489
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.58 E-value=0.094 Score=53.62 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.+.--.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34689999999999999999987643
No 490
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.54 E-value=0.087 Score=47.56 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.|+|+|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 491
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.51 E-value=0.17 Score=46.41 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCChHHHHHHHHHhh
Q 038398 135 FDKVWRCLGEEQVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 135 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
+..+.+++ ....-.|.|+|.+|+|||||+..+...
T Consensus 5 ~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHHHH-TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHhc-CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34455533 345567899999999999999999854
No 492
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.49 E-value=0.095 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998664
No 493
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.45 E-value=0.099 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998654
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.43 E-value=0.12 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
...+++|+|+.|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.43 E-value=0.069 Score=51.20 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNK 170 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~ 170 (720)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999988764
No 496
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.42 E-value=0.084 Score=52.42 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 497
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.38 E-value=0.22 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|.|-|+.|+||||+++.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 498
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.35 E-value=0.13 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 146 QVGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 146 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
....|+|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999997653
No 499
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.31 E-value=0.1 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhh
Q 038398 148 GIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 148 ~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 500
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.31 E-value=0.1 Score=53.28 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhh
Q 038398 147 VGIIGLYGMGGVGKTTLLTKINNKL 171 (720)
Q Consensus 147 ~~vi~I~G~gGiGKTtLa~~v~~~~ 171 (720)
-.+++|+|+.|+|||||.+.++--.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999997654
Done!