BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038400
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 91/237 (38%), Gaps = 67/237 (28%)
Query: 225 SKSQF--LRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKD 282
+ QF L L L+ + + P I +L +R L + C EL ELP+
Sbjct: 122 TXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA------------CPELTELPE- 168
Query: 283 IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIV 342
L + S + G+ +L SLR L +G + L I L+ L++L I
Sbjct: 169 ----------PLASTDASGEHQGLVNLQSLR-LEWTG---IRSLPASIANLQNLKSLKIR 214
Query: 343 CCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGE 402
P L +L PAI +L LE L L C +L +N P
Sbjct: 215 NSP-LSALGPAIHHLPKLEELDLRGCTAL-----------------RNYPP--------- 247
Query: 403 ITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSL 459
+ G L+ L++ DC N + LP + L LE L + GC LS L
Sbjct: 248 -----------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 16/158 (10%)
Query: 223 CISKSQFLRVLNLSESAIEV---CPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL 279
C+ K + L+ L+LS S IE C ++ NL+H++YL+LS N P + +E
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNE-----PLGLEDQAFKEC 398
Query: 280 PKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGC---GDLEHLFEEIDQLRVL 336
P+ L A T S ++L LR L +S C +HL + LR L
Sbjct: 399 PQ-----LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 337 RTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLN 374
IS ++ + SLE L L C L ++
Sbjct: 454 NLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID 491
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N ++D ++L DL + TI+ + E + +F S + + R+
Sbjct: 6 VSKVASHLE---VNCDKRDLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 58
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 100
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 156 ANNNLTELPAGLLNGLENLD 175
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N ++D ++L DL + TI+ + E + +F S + + R+
Sbjct: 6 VSKVASHLE---VNCDKRDLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 58
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 100
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 156 ANNDLTELPAGLLNGLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 29/199 (14%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N +++ ++L DL + TI+ + E + +F + + L L
Sbjct: 6 VSKVASHLE---VNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQL 60
Query: 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFA 293
NL + + + G L + LDLS N +++ LP L + LP A
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------A 101
Query: 294 LTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPA 353
LT S LG+LR G G+L+ L+ + ++L+ L + P+L L A
Sbjct: 102 LTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 354 IKYLSSLETLFLYKCESLD 372
L+ L L E+LD
Sbjct: 157 NNNLTELPAGLLNGLENLD 175
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 29/199 (14%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N +++ ++L DL + TI+ + E + +F + + L L
Sbjct: 6 VSKVASHLE---VNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQL 60
Query: 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFA 293
NL + + + G L + LDLS N +++ LP L + LP A
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------A 101
Query: 294 LTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPA 353
LT S LG+LR G G+L+ L+ + ++L+ L + P+L L A
Sbjct: 102 LTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 354 IKYLSSLETLFLYKCESLD 372
L+ L L E+LD
Sbjct: 157 NNNLTELPAGLLNGLENLD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 29/199 (14%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N +++ ++L DL + TI+ + E + +F + + L L
Sbjct: 6 VSKVASHLE---VNCDKRNLTALPPDLPKDTTILHLS--ENLLYTFSLATLMPYTRLTQL 60
Query: 234 NLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFA 293
NL + + + G L + LDLS N +++ LP L + LP A
Sbjct: 61 NLDRAELTKL-QVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------A 101
Query: 294 LTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPA 353
LT S LG+LR G G+L+ L+ + ++L+ L + P+L L A
Sbjct: 102 LTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 354 IKYLSSLETLFLYKCESLD 372
L+ L L E+LD
Sbjct: 157 NNNLTELPAGLLNGLENLD 175
>pdb|3OJF|A Chain A, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
pdb|3OJF|D Chain D, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
pdb|3OJF|B Chain B, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
pdb|3OJF|C Chain C, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase With Nadp+ And Indole
Naphthyridinone (Complex Form)
Length = 257
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 206 IVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKI-------GNLKHMRYLDL 258
I F+ D+ + FV++ S+ FL N+S ++ R+ GN+ + YL
Sbjct: 94 IAFANRDD-LKGEFVDT--SRDGFLLAQNISAFSLTAVAREAKKVMTEGGNILTLTYL-- 148
Query: 259 SGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR----SLGSLRC 314
G ++ K ++ + L +++L + L + GIR S G +R
Sbjct: 149 -GGERVVK-NYNVMGVAKASLEASVKYLAN-----------DLGQHGIRVNAISAGPIRT 195
Query: 315 LTISGCGDLEHLFEEIDQLRVLR 337
L+ G GD + EI++ LR
Sbjct: 196 LSAKGVGDFNSILREIEERAPLR 218
>pdb|2QIO|A Chain A, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|2QIO|B Chain B, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|2QIO|C Chain C, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|2QIO|D Chain D, X-Ray Structure Of Enoyl-Acyl Carrier Protein Reductase
From Bacillus Anthracis With Triclosan
pdb|3OJE|A Chain A, Crystal Structure Of The Bacillus Cereus Enoyl-Acyl
Carrier Protein Reductase (Apo Form)
Length = 256
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 206 IVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKI-------GNLKHMRYLDL 258
I F+ D+ + FV++ S+ FL N+S ++ R+ GN+ + YL
Sbjct: 94 IAFANRDD-LKGEFVDT--SRDGFLLAQNISAFSLTAVAREAKKVMTEGGNILTLTYL-- 148
Query: 259 SGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR----SLGSLRC 314
G ++ K ++ + L +++L + L + GIR S G +R
Sbjct: 149 -GGERVVK-NYNVMGVAKASLEASVKYLAN-----------DLGQHGIRVNAISAGPIRT 195
Query: 315 LTISGCGDLEHLFEEIDQLRVLR 337
L+ G GD + EI++ LR
Sbjct: 196 LSAKGVGDFNSILREIEERAPLR 218
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 217 QSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275
++ I +L +LNL + I P ++G+L+ + LDLS N ++P+++ L
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 276 L 276
+
Sbjct: 702 M 702
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 217 QSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275
++ I +L +LNL + I P ++G+L+ + LDLS N ++P+++ L
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 276 L 276
+
Sbjct: 705 M 705
>pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As
Precipitant
pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a); Crystals Grown In Peg-6000
pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis
Thaliana (Atpdf1a) In Complex With Met-Ala-Ser
Length = 197
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 22/118 (18%)
Query: 347 LISLPPAIKYLSSLETLFLYKCESLD---LNINMEMEGEGSNHDRKNTRPHLRRVVIGEI 403
++ + P +K S+ + LF C S+D + +E + +DR+ R +
Sbjct: 90 MVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEV-------- 141
Query: 404 TQLLELPQW---LLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458
W +LQ D L L +D +PR+ + ++ L+ GCPKL S
Sbjct: 142 ----NASGWQARILQHECDHLDGNLYVD----KMVPRTFRTVDNLDLPLAEGCPKLGS 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N +++ ++L DL + TI+ + E + +F S + + R+
Sbjct: 7 VSKVASHLE---VNCDKRNLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 59
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 60 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 101
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 102 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 157 ANNNLTELPAGLLNGLENLD 176
>pdb|3D3I|A Chain A, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
pdb|3D3I|B Chain B, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
Length = 761
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 373 LNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQ 415
N++ E G+G N + +NT+P L + E+ + + W+ +
Sbjct: 373 WNLSPERGGDGGNWNERNTKPSLAAWSVXEVYNVTQDKTWVAE 415
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 167 VNSDCQSIPK-RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCIS 225
+ S+ Q I + + ++SF AA+ SR + L + G++ ++ + D + Q VE IS
Sbjct: 13 ITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVED-IS 71
Query: 226 KSQFLRVLNLS 236
++ ++L L+
Sbjct: 72 SNRIYKILELN 82
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 167 VNSDCQSIPK-RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCIS 225
+ S+ Q I + + ++SF AA+ SR + L + G++ ++ + D + Q VE IS
Sbjct: 14 ITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVED-IS 72
Query: 226 KSQFLRVLNLS 236
++ ++L L+
Sbjct: 73 SNRIYKILELN 83
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N ++ ++L DL + TI+ + E + +F S + + R+
Sbjct: 6 VSKVASHLE---VNCDKRQLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 58
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 100
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 156 ANNQLTELPAGLLNGLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N ++ ++L DL + TI+ + E + +F S + + R+
Sbjct: 6 VSKVASHLE---VNCDKRQLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 58
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 100
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 156 ANNQLTELPAGLLNGLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N ++ ++L DL + TI+ + E + +F S + + R+
Sbjct: 6 VSKVASHLE---VNCDKRQLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 58
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 100
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 156 ANNQLTELPAGLLNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 174 IPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVL 233
+ K HL N ++ ++L DL + TI+ + E + +F S + + R+
Sbjct: 6 VSKVASHLE---VNCDKRQLTALPPDLPKDTTILHLS--ENLLYTF--SLATLMPYTRLT 58
Query: 234 NLSESAIEVCPRKI-GNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292
L+ E+ ++ G L + LDLS N +++ LP L + LP
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHN-QLQSLP-----LLGQTLP------------ 100
Query: 293 ALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352
ALT S LG+LR G G+L+ L+ + ++L+ L + P+L L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 353 AIKYLSSLETLFLYKCESLD 372
A L+ L L E+LD
Sbjct: 156 ANNQLTELPAGLLNGLENLD 175
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 230 LRVLNLSESAIEV---CPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL 286
L L+LS + + C + ++YLDLS N I + +LE L +L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 287 TSLRAFALTTKQKSL------------QESGI-RSLGSLRCLTISGCGDLEHLFEEI-DQ 332
+ F++ ++L +GI L SL L ++G E+ +I +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 333 LRVLRTLSIVCCPRLISLPPAIKYLSSLETL------------FLYKC----ESLDLNIN 376
LR L L + C P A LSSL+ L F YKC + LD ++N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 377 MEM 379
M
Sbjct: 529 HIM 531
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 230 LRVLNLSESAIEV---CPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL 286
L L+LS + + C + ++YLDLS N I + +LE L +L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 287 TSLRAFALTTKQKSL------------QESGI-RSLGSLRCLTISGCGDLEHLFEEI-DQ 332
+ F++ ++L +GI L SL L ++G E+ +I +
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 333 LRVLRTLSIVCCPRLISLPPAIKYLSSLETL------------FLYKC----ESLDLNIN 376
LR L L + C P A LSSL+ L F YKC + LD ++N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Query: 377 MEM 379
M
Sbjct: 553 HIM 555
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,818,812
Number of Sequences: 62578
Number of extensions: 529425
Number of successful extensions: 1372
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 36
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)