Query 038400
Match_columns 504
No_of_seqs 339 out of 3144
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.9E-51 1.3E-55 428.4 22.9 453 2-486 328-848 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-44 3.4E-49 399.7 30.5 440 2-483 362-841 (1153)
3 PLN03210 Resistant to P. syrin 99.9 2.4E-21 5.3E-26 215.5 23.7 259 201-483 589-909 (1153)
4 PLN00113 leucine-rich repeat r 99.9 3.9E-22 8.5E-27 221.3 17.1 294 177-477 70-390 (968)
5 PLN00113 leucine-rich repeat r 99.9 1E-21 2.3E-26 217.9 14.5 294 177-478 119-439 (968)
6 KOG0444 Cytoskeletal regulator 99.9 7.9E-24 1.7E-28 204.2 -5.4 296 177-495 56-393 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 2.1E-20 4.5E-25 180.9 -3.0 279 176-474 7-323 (1255)
8 KOG0472 Leucine-rich repeat pr 99.7 6.6E-20 1.4E-24 168.7 -7.7 225 223-480 86-310 (565)
9 KOG4194 Membrane glycoprotein 99.7 9.7E-18 2.1E-22 161.4 3.6 241 224-480 169-429 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 1.5E-18 3.2E-23 159.9 -2.4 261 196-478 223-539 (565)
11 PF00931 NB-ARC: NB-ARC domain 99.6 5.8E-17 1.3E-21 154.4 0.4 106 3-108 169-285 (287)
12 KOG4194 Membrane glycoprotein 99.6 6.4E-15 1.4E-19 142.2 9.0 256 202-478 79-352 (873)
13 KOG0618 Serine/threonine phosp 99.6 8.3E-17 1.8E-21 162.9 -5.2 284 178-475 47-460 (1081)
14 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.7E-21 130.6 -4.2 133 226-372 31-164 (264)
15 PRK15370 E3 ubiquitin-protein 99.5 3.1E-14 6.7E-19 149.1 10.9 225 201-479 199-427 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 3E-13 6.5E-18 141.0 13.1 246 179-479 204-457 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 1.6E-13 3.5E-18 143.8 10.2 222 201-478 178-399 (754)
18 KOG0617 Ras suppressor protein 99.4 3.4E-15 7.4E-20 122.2 -4.9 150 276-466 45-195 (264)
19 KOG0618 Serine/threonine phosp 99.4 1.1E-14 2.3E-19 147.9 -2.8 223 226-479 239-488 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.4 2.5E-13 5.5E-18 131.5 3.0 175 183-369 5-204 (319)
21 PRK15387 E3 ubiquitin-protein 99.3 6.3E-12 1.4E-16 131.3 11.4 181 228-460 282-462 (788)
22 cd00116 LRR_RI Leucine-rich re 99.3 1.4E-12 3.1E-17 126.3 4.7 261 178-478 25-318 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.1 3.3E-11 7.2E-16 128.6 3.0 154 199-369 521-679 (889)
24 KOG4237 Extracellular matrix p 99.0 6.2E-11 1.4E-15 110.0 0.6 221 220-453 83-356 (498)
25 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3.1E-16 119.2 -4.0 171 228-430 75-245 (722)
26 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 110.0 0.5 35 417-452 299-335 (505)
27 KOG4237 Extracellular matrix p 98.9 2.3E-11 5.1E-16 112.7 -5.4 233 228-478 67-357 (498)
28 KOG4341 F-box protein containi 98.9 9.6E-11 2.1E-15 109.6 -2.3 288 176-483 138-442 (483)
29 COG4886 Leucine-rich repeat (L 98.9 2.8E-09 6.1E-14 106.4 6.1 131 224-369 112-243 (394)
30 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.7E-15 111.2 -2.7 212 232-477 54-270 (722)
31 PF14580 LRR_9: Leucine-rich r 98.8 2.4E-09 5.2E-14 91.9 1.9 125 227-368 18-150 (175)
32 COG4886 Leucine-rich repeat (L 98.8 8.3E-09 1.8E-13 103.0 5.7 198 231-460 96-294 (394)
33 KOG3207 Beta-tubulin folding c 98.7 7.5E-09 1.6E-13 97.7 2.5 183 176-372 121-315 (505)
34 PF14580 LRR_9: Leucine-rich r 98.6 3.5E-08 7.7E-13 84.7 4.0 127 199-344 17-150 (175)
35 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.7E-13 91.5 0.9 37 417-454 372-410 (490)
36 KOG1259 Nischarin, modulator o 98.6 7.6E-09 1.7E-13 92.9 -1.3 127 227-370 283-411 (490)
37 KOG2120 SCF ubiquitin ligase, 98.5 1.6E-09 3.5E-14 97.1 -6.2 180 288-478 186-374 (419)
38 KOG4341 F-box protein containi 98.5 6.1E-09 1.3E-13 97.7 -4.6 263 201-483 138-417 (483)
39 PLN03150 hypothetical protein; 98.4 4.5E-07 9.7E-12 95.1 7.8 108 252-371 419-528 (623)
40 KOG1909 Ran GTPase-activating 98.4 4.8E-08 1E-12 89.8 0.0 168 194-369 23-224 (382)
41 PRK15386 type III secretion pr 98.4 3E-06 6.5E-11 81.9 11.6 62 286-352 51-112 (426)
42 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 91.0 7.2 82 288-369 419-501 (623)
43 PRK15386 type III secretion pr 98.2 5.8E-06 1.3E-10 79.9 9.1 61 306-372 48-108 (426)
44 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.3E-11 60.4 4.2 35 228-262 1-36 (61)
45 KOG2120 SCF ubiquitin ligase, 98.2 9.9E-08 2.1E-12 85.9 -3.0 61 202-264 186-247 (419)
46 KOG1909 Ran GTPase-activating 98.1 7.6E-07 1.7E-11 82.1 1.6 246 176-454 30-309 (382)
47 KOG2982 Uncharacterized conser 98.0 1.3E-06 2.9E-11 78.7 0.5 62 418-480 198-262 (418)
48 PF13855 LRR_8: Leucine rich r 98.0 1.5E-05 3.2E-10 55.9 4.8 56 311-368 2-59 (61)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.7E-10 51.0 3.6 35 228-262 1-35 (44)
50 KOG0531 Protein phosphatase 1, 97.8 6.2E-06 1.3E-10 82.6 1.1 106 224-345 91-197 (414)
51 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.3E-10 84.7 2.5 151 177-343 123-284 (699)
52 KOG0531 Protein phosphatase 1, 97.8 3.2E-06 7E-11 84.7 -1.4 131 226-373 70-201 (414)
53 KOG3665 ZYG-1-like serine/thre 97.7 2.4E-05 5.2E-10 82.2 4.2 130 201-345 122-261 (699)
54 PF12799 LRR_4: Leucine Rich r 97.5 9.7E-05 2.1E-09 47.5 3.4 36 252-300 2-37 (44)
55 KOG1859 Leucine-rich repeat pr 97.5 5.1E-06 1.1E-10 83.8 -4.0 142 223-369 104-265 (1096)
56 KOG1859 Leucine-rich repeat pr 97.4 2.8E-06 6.1E-11 85.5 -7.1 14 176-189 109-122 (1096)
57 KOG1947 Leucine rich repeat pr 97.3 4.1E-05 8.9E-10 78.6 -0.7 61 424-484 381-444 (482)
58 KOG2982 Uncharacterized conser 97.3 0.00042 9.1E-09 63.0 5.7 64 197-261 67-131 (418)
59 KOG1947 Leucine rich repeat pr 97.3 3.1E-05 6.8E-10 79.5 -2.0 228 217-483 177-417 (482)
60 KOG4579 Leucine-rich repeat (L 97.3 3.8E-05 8.3E-10 61.5 -1.3 84 224-320 49-133 (177)
61 KOG4579 Leucine-rich repeat (L 97.1 0.00013 2.7E-09 58.6 0.0 93 195-303 47-139 (177)
62 KOG1644 U2-associated snRNP A' 96.7 0.003 6.4E-08 54.4 5.0 84 284-368 61-150 (233)
63 COG5238 RNA1 Ran GTPase-activa 96.6 0.00036 7.9E-09 62.6 -1.2 242 196-453 25-313 (388)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0019 4.2E-08 57.9 1.9 106 228-344 43-153 (260)
65 KOG1644 U2-associated snRNP A' 96.0 0.013 2.8E-07 50.6 5.1 40 329-369 59-99 (233)
66 PF00560 LRR_1: Leucine Rich R 95.8 0.0055 1.2E-07 32.7 1.4 20 230-249 2-21 (22)
67 KOG2123 Uncharacterized conser 95.4 0.00089 1.9E-08 60.4 -4.1 57 200-262 18-74 (388)
68 COG5238 RNA1 Ran GTPase-activa 95.3 0.029 6.2E-07 50.8 4.8 191 178-369 32-253 (388)
69 KOG2739 Leucine-rich acidic nu 94.4 0.025 5.4E-07 51.0 2.2 85 246-345 38-127 (260)
70 PF00560 LRR_1: Leucine Rich R 94.0 0.033 7.2E-07 29.6 1.3 9 312-320 2-10 (22)
71 PF13504 LRR_7: Leucine rich r 93.8 0.047 1E-06 26.9 1.5 15 229-243 2-16 (17)
72 KOG3864 Uncharacterized conser 92.8 0.018 3.9E-07 49.8 -1.4 38 417-454 149-187 (221)
73 PF13306 LRR_5: Leucine rich r 92.7 0.47 1E-05 38.5 7.0 33 286-318 57-89 (129)
74 KOG2123 Uncharacterized conser 92.3 0.0088 1.9E-07 54.2 -4.1 101 225-340 16-123 (388)
75 PF13306 LRR_5: Leucine rich r 91.9 0.43 9.3E-06 38.8 5.8 105 195-319 6-112 (129)
76 KOG0473 Leucine-rich repeat pr 89.8 0.015 3.3E-07 51.3 -4.8 80 227-319 41-120 (326)
77 KOG0473 Leucine-rich repeat pr 89.5 0.0082 1.8E-07 52.9 -6.8 88 245-346 36-123 (326)
78 PRK04841 transcriptional regul 89.0 3.5 7.6E-05 46.1 11.7 122 17-160 206-332 (903)
79 KOG3864 Uncharacterized conser 88.9 0.093 2E-06 45.5 -0.8 65 416-480 122-189 (221)
80 smart00370 LRR Leucine-rich re 84.3 0.7 1.5E-05 25.5 1.5 17 229-245 3-19 (26)
81 smart00369 LRR_TYP Leucine-ric 84.3 0.7 1.5E-05 25.5 1.5 17 229-245 3-19 (26)
82 smart00367 LRR_CC Leucine-rich 84.2 0.6 1.3E-05 25.8 1.2 18 466-483 1-18 (26)
83 smart00364 LRR_BAC Leucine-ric 68.1 3.4 7.4E-05 22.9 1.2 17 229-245 3-19 (26)
84 KOG4308 LRR-containing protein 63.1 0.24 5.1E-06 50.3 -7.1 168 195-370 109-302 (478)
85 PF13516 LRR_6: Leucine Rich r 55.2 7.2 0.00016 20.8 1.1 12 229-240 3-14 (24)
86 smart00365 LRR_SD22 Leucine-ri 51.1 12 0.00026 20.8 1.5 14 228-241 2-15 (26)
87 smart00368 LRR_RI Leucine rich 44.6 16 0.00035 20.5 1.4 13 229-241 3-15 (28)
88 PF14050 Nudc_N: N-terminal co 37.3 68 0.0015 22.2 3.9 32 14-45 2-33 (62)
89 PRK00080 ruvB Holliday junctio 29.2 91 0.002 30.1 4.9 99 17-134 203-310 (328)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-51 Score=428.40 Aligned_cols=453 Identities=29% Similarity=0.476 Sum_probs=326.0
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhh------------hccCCchhHHHhhhhC
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLE------------QKESGILPILRLSYYQ 69 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~------------~~~~~i~~~L~~sy~~ 69 (504)
++||+...+.+++++++|++||++|+|||||++|+|+.|+.+++..+|+..- ...+.|..+|++|||.
T Consensus 328 ~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 328 KKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred HhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 5788875555678999999999999999999999999999999999998721 1245788999999999
Q ss_pred CChhhHhhhhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeC
Q 038400 70 LPPHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMH 149 (504)
Q Consensus 70 L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mh 149 (504)
||++.|.||+|||.||+||.|+++.|+.+|+||||+.+......+++.|+.|+.+|++++++..... .++..+|+||
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~---~~~~~~~kmH 484 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD---EGRKETVKMH 484 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc---ccceeEEEee
Confidence 9988999999999999999999999999999999999966788999999999999999999987654 2567899999
Q ss_pred hhHHHHHHHHhc-----CceEEeccc-------CCCCCCCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccch
Q 038400 150 DLMHDLALLVAK-----DEFLVVNSD-------CQSIPKRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQ 217 (504)
Q Consensus 150 dl~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 217 (504)
|++||||.++++ +++.++... ....+..+|++++.++.... ...-..+++|++|.+..+.. ...
T Consensus 485 DvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~-~l~ 560 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD-WLL 560 (889)
T ss_pred HHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch-hhh
Confidence 999999999999 666555543 12334678999998876622 22234556899999986542 133
Q ss_pred HHHHHHhcCCCcccEEEeCCCC-ccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecc
Q 038400 218 SFVESCISKSQFLRVLNLSESA-IEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTT 296 (504)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~ 296 (504)
.....+|..++.||||||++|. +..+|+++++|.+||||+++++. +.+||.++++|.+|.+|++..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-------------I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-------------ISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-------------ccccchHHHHHHhhheecccc
Confidence 4455678899999999999764 66999999999999999999875 889999999999999999986
Q ss_pred cccccc-cccCCCCCCccEEeeeCCC--CcccchhhcCCCCcccEEeeccCC-------------------------Ccc
Q 038400 297 KQKSLQ-ESGIRSLGSLRCLTISGCG--DLEHLFEEIDQLRVLRTLSIVCCP-------------------------RLI 348 (504)
Q Consensus 297 ~~~~~~-~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~l~~L~~L~l~~~~-------------------------~l~ 348 (504)
+..... +.....|++||+|.+.... ........+.++.+|+.+...... ...
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~ 707 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR 707 (889)
T ss_pred ccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccc
Confidence 654333 3444559999999987643 111222344555555555443221 123
Q ss_pred ccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCC-CCCccceEEEccCCCcccchhhhhcCCCCCccEEEec
Q 038400 349 SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKN-TRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLII 427 (504)
Q Consensus 349 ~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 427 (504)
..+..+..+.+|+.|.+.+|...+......- ..... .++++..+.+.+|.....+ .|. ...++|+.|.+.
T Consensus 708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~------~~~~~~~f~~l~~~~~~~~~~~r~l-~~~--~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 708 TLISSLGSLGNLEELSILDCGISEIVIEWEE------SLIVLLCFPNLSKVSILNCHMLRDL-TWL--LFAPHLTSLSLV 778 (889)
T ss_pred eeecccccccCcceEEEEcCCCchhhccccc------ccchhhhHHHHHHHHhhcccccccc-chh--hccCcccEEEEe
Confidence 3455677888999999999987654321100 01111 2445666666666555443 343 356888888888
Q ss_pred cCCCCCccCcCCCCCCCc----------ceE----ecccCccCCcCccCCCCCCCcCeEeEeCCCchhhhcCC
Q 038400 428 DCPNFMALPRSLKDLEAL----------ETL----FILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSERCKR 486 (504)
Q Consensus 428 ~~~~l~~l~~~~~~l~~L----------~~L----~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~ 486 (504)
.|+.++.+......+..+ ..+ ++.+.+.+...|- ..+.|+.+.+..||++...+..
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCccc
Confidence 887776654323222222 222 2222222222222 3344777777777777765444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-44 Score=399.74 Aligned_cols=440 Identities=22% Similarity=0.356 Sum_probs=312.5
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhh----h-hccCCchhHHHhhhhCCCh-hhH
Q 038400 2 KCAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYL----E-QKESGILPILRLSYYQLPP-HLK 75 (504)
Q Consensus 2 ~~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~----~-~~~~~i~~~L~~sy~~L~~-~~k 75 (504)
++||+++.+ ++++++++++||++|+|+||||+++|++|++ ++..+|+.. . ..+.+|.++|++|||+|++ ++|
T Consensus 362 ~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k 439 (1153)
T PLN03210 362 RSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDK 439 (1153)
T ss_pred HHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchh
Confidence 579988664 5689999999999999999999999999995 567889872 2 2345799999999999987 599
Q ss_pred hhhhhhcccCCCCccChHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHH
Q 038400 76 QCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDL 155 (504)
Q Consensus 76 ~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~ 155 (504)
.||+|+||||.+..++. +..|.+.+.+... ..+..|++++|++.... .+.|||++|+|
T Consensus 440 ~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~~~--------~~~MHdLl~~~ 497 (1153)
T PLN03210 440 AIFRHIACLFNGEKVND---IKLLLANSDLDVN-----------IGLKNLVDKSLIHVRED--------IVEMHSLLQEM 497 (1153)
T ss_pred hhhheehhhcCCCCHHH---HHHHHHhcCCCch-----------hChHHHHhcCCEEEcCC--------eEEhhhHHHHH
Confidence 99999999999976543 6677776543321 23889999999986432 58999999999
Q ss_pred HHHHhcCce-------EEeccc-------CCCCCCCeEEEEEEcCCCCcc-chhhhhcCCCCeeEEeeecCCcc----cc
Q 038400 156 ALLVAKDEF-------LVVNSD-------CQSIPKRVRHLSFAAANASRK-DFSSLLSDLGRVRTIVFSTDDEK----IS 216 (504)
Q Consensus 156 ~~~~~~~~~-------~~~~~~-------~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~----~~ 216 (504)
|+++++++. +..... .......++.+++........ .....+.++++|+.|.+...... ..
T Consensus 498 ~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~ 577 (1153)
T PLN03210 498 GKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR 577 (1153)
T ss_pred HHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccce
Confidence 999987653 111110 122335678887776544322 22456888999999988643211 01
Q ss_pred hHHHHHHhcC-CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeec
Q 038400 217 QSFVESCISK-SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALT 295 (504)
Q Consensus 217 ~~~~~~~~~~-~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~ 295 (504)
... +..+.. ...||.|++.++.+..+|..+ .+.+|+.|++++|. +..+|.++..+++|+.|+++
T Consensus 578 ~~l-p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-------------l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 578 WHL-PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-------------LEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred eec-CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-------------ccccccccccCCCCCEEECC
Confidence 111 122333 356999999999999999887 57899999999875 77788888899999999999
Q ss_pred ccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccc
Q 038400 296 TKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNI 375 (504)
Q Consensus 296 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~ 375 (504)
++......+.++.+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|..+...+
T Consensus 643 ~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 643 GSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 76544444568899999999999999999999999999999999999999999999866 78999999999998765432
Q ss_pred cc-------cccCCC-CCCCCCCCCCccceEEEccCCCc------ccchhhhhcCCCCCccEEEeccCCCCCccCcCCCC
Q 038400 376 NM-------EMEGEG-SNHDRKNTRPHLRRVVIGEITQL------LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKD 441 (504)
Q Consensus 376 ~~-------~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l------~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 441 (504)
.. ...+.. ...+.....++|+.|.+.++... ..++... ...+++|+.|++++|+.+..+|.++++
T Consensus 722 ~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 722 DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhC
Confidence 10 000000 00001111223344443332110 0000000 012356777777777777777777777
Q ss_pred CCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 442 LEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
+++|+.|+|++|..++.+|..+ ++++|+.|++++|..++..
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 7777777777777777777655 6777777777777766544
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.4e-21 Score=215.48 Aligned_cols=259 Identities=23% Similarity=0.379 Sum_probs=190.0
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcce---------
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSI--------- 271 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~--------- 271 (504)
.+||.|.+.++... ..+..+ .+.+|+.|++.++.+..+|..+..+++|++|++++|..++.+|...
T Consensus 589 ~~Lr~L~~~~~~l~----~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR----CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC----CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEE
Confidence 35788877755433 111222 3577888888888888888878888888888888777677776421
Q ss_pred --eccccccCchhhhccccCCeeeecccc-cccccccCCCCCCccEEeeeCCCCcccchhhcC-----------------
Q 038400 272 --YCLELEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLFEEID----------------- 331 (504)
Q Consensus 272 --~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~----------------- 331 (504)
.|..+..+|..++++++|+.|++++|. ....|..+ ++++|+.|++++|..+..+|....
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 145567778888888888888888764 33344333 677888888887765554442110
Q ss_pred ---------------------------------CCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccc
Q 038400 332 ---------------------------------QLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINME 378 (504)
Q Consensus 332 ---------------------------------~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 378 (504)
..++|+.|++++|..+..+|.+++++++|+.|++++|..++..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L---- 818 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL---- 818 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee----
Confidence 1235667777777777778888888888888888888766532
Q ss_pred ccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCc
Q 038400 379 MEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSS 458 (504)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 458 (504)
+.....++|+.|++++|..+..+|.. .++|+.|+++++ .++.+|.++..+++|+.|++++|+.++.
T Consensus 819 --------P~~~~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 819 --------PTGINLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred --------CCCCCccccCEEECCCCCcccccccc-----ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 11223458889999998888777643 378899998876 6788999999999999999999999999
Q ss_pred CccCCCCCCCcCeEeEeCCCchhhh
Q 038400 459 LSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 459 l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
+|..+..+++|+.+++++|++|+..
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCcccccccCCCeeecCCCcccccc
Confidence 9998899999999999999999754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=3.9e-22 Score=221.31 Aligned_cols=294 Identities=22% Similarity=0.238 Sum_probs=134.8
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 255 (504)
+++.+++..+.+. ...+..+..+++|++|+++++.. ...++...+..+++|++|++++|.+. .+|. +.+++|++
T Consensus 70 ~v~~L~L~~~~i~-~~~~~~~~~l~~L~~L~Ls~n~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNIS-GKISSAIFRLPYIQTINLSNNQL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCcc-ccCChHHhCCCCCCEEECCCCcc--CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4566666555442 22344555666666666665442 12223333445566666666665554 2222 33455555
Q ss_pred eeccCCCCccccCccee-----------cccc-ccCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCC
Q 038400 256 LDLSGNSKIKKLPKSIY-----------CLEL-EELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGD 322 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~-----------~~~l-~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 322 (504)
|++++|...+.+|..+. .+.+ ..+|..++++++|++|++++|... ..|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 55555432223332221 0111 234445555555555555554433 2334455555555555555544
Q ss_pred cccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc-c---------cccCC---CCCCCCC
Q 038400 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN-M---------EMEGE---GSNHDRK 389 (504)
Q Consensus 323 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~-~---------~~~~~---~~~~~~~ 389 (504)
...+|..++.+++|++|++++|.....+|..++.+++|++|++++|........ . .+... .......
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 444555555555555555555544444555555555555555555432111000 0 00000 0000001
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTL 469 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 469 (504)
...++|+.|++.++.....+|.++ ..+++|+.|++.+|.....+|..++.+++|+.|++++|.....+|..+..+++|
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 112245555555443333344444 344555555555554333455555555555555555554434445555555555
Q ss_pred CeEeEeCC
Q 038400 470 KSLTIGGC 477 (504)
Q Consensus 470 ~~L~l~~c 477 (504)
+.|++.+|
T Consensus 383 ~~L~l~~n 390 (968)
T PLN00113 383 FKLILFSN 390 (968)
T ss_pred CEEECcCC
Confidence 55555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1e-21 Score=217.94 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=156.5
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~ 255 (504)
.++++++..+..... ++ ...+++|++|+++++... ...+..+..+++|++|++++|.+. .+|..++++++|++
T Consensus 119 ~L~~L~Ls~n~l~~~-~p--~~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 119 SLRYLNLSNNNFTGS-IP--RGSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCEEECcCCccccc-cC--ccccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 455555555443211 11 123455556655544322 112233455555666666555544 45555555556666
Q ss_pred eeccCCCCccccCccee-----------cccc-ccCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCC
Q 038400 256 LDLSGNSKIKKLPKSIY-----------CLEL-EELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGD 322 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~-----------~~~l-~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~ 322 (504)
|++++|...+.+|..+. .+.+ ..+|..++++++|++|++++|... ..|..++++++|+.|++++|..
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 66655544334443322 1112 245556666666666666665543 3344566666666666666555
Q ss_pred cccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc----------ccccCC---CCCCCCC
Q 038400 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN----------MEMEGE---GSNHDRK 389 (504)
Q Consensus 323 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~----------~~~~~~---~~~~~~~ 389 (504)
...+|..++.+++|++|++++|.....+|..+..+++|+.|++++|........ ....+. .......
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 555566666666666666666654445565566666666666665543211100 000000 0000011
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTL 469 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L 469 (504)
....+|+.|+++++.-...+|.++ ..+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+..+++|
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 112355666666544333445554 345666666666665555566667777788888887776555677777778888
Q ss_pred CeEeEeCCC
Q 038400 470 KSLTIGGCP 478 (504)
Q Consensus 470 ~~L~l~~c~ 478 (504)
+.|++++|.
T Consensus 431 ~~L~Ls~N~ 439 (968)
T PLN00113 431 YFLDISNNN 439 (968)
T ss_pred CEEECcCCc
Confidence 888887765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=7.9e-24 Score=204.24 Aligned_cols=296 Identities=25% Similarity=0.329 Sum_probs=209.4
Q ss_pred CeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCee
Q 038400 177 RVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYL 256 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L 256 (504)
++.|+++..+.. ..+.+.+..++.||++.+..+..+. .-++..+-++..|.+|||++|++...|..+..-+++-+|
T Consensus 56 kLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 56 KLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRDNNLKN--SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhh--HhhhhhhccchhhHHHhhhcccccc--CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 456666666554 2335566677778887776555432 223334556788888888888888888888888888888
Q ss_pred eccCCCCccccCccee------------ccccccCchhhhccccCCeeeecccccccc-cccCCCCCCccEEeeeCCC-C
Q 038400 257 DLSGNSKIKKLPKSIY------------CLELEELPKDIRHLTSLRAFALTTKQKSLQ-ESGIRSLGSLRCLTISGCG-D 322 (504)
Q Consensus 257 ~l~~~~~~~~lp~~~~------------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~ 322 (504)
+|++| .+.++|.+++ .+.++.||..+..|..|+.|.+++|..... ...+..|++|+.|.+++.+ .
T Consensus 132 NLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 88876 5777777653 456888999999999999999998875432 3445667788888888754 4
Q ss_pred cccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEcc
Q 038400 323 LEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGE 402 (504)
Q Consensus 323 l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 402 (504)
+..+|.++..|.||+.++++.| .+..+|..+-++++|+.|++++|...+...... .-.+|++|+++.
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~------------~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEG------------EWENLETLNLSR 277 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHH------------HHhhhhhhcccc
Confidence 6678999999999999999986 588999999999999999999997655432110 001344444443
Q ss_pred CCCccc-------------------------chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCC
Q 038400 403 ITQLLE-------------------------LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLS 457 (504)
Q Consensus 403 ~~~l~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 457 (504)
+.++. +|+.+ +.+.+|+.+...++ .++-+|+++..++.|+.|.++.+ .+-
T Consensus 278 -NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLi 352 (1255)
T KOG0444|consen 278 -NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLI 352 (1255)
T ss_pred -chhccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-cee
Confidence 23333 44444 44455555555443 46667777778888888888754 677
Q ss_pred cCccCCCCCCCcCeEeEeCCCchhhhcCCCC---CCCCCCc
Q 038400 458 SLSEDMHHVTTLKSLTIGGCPALSERCKRPT---GEDWPKI 495 (504)
Q Consensus 458 ~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~---~~~~~~i 495 (504)
.+|+.++-++.|+.|++..+|+|.-.+.+.. ..+|..|
T Consensus 353 TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 8999999999999999999999987766543 3455544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.1e-20 Score=180.85 Aligned_cols=279 Identities=19% Similarity=0.244 Sum_probs=142.5
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
..+|.+.+.+++.+...++.....++.++.|.+...... ..++-++.+.+|..|.+.+|++.++...+..|+.||.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE----QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh----hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 457788888888877778888888888888888643322 2333444555555555555555544444555555555
Q ss_pred eeccCCCCcc--ccCccee-----------ccccccCchhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCC
Q 038400 256 LDLSGNSKIK--KLPKSIY-----------CLELEELPKDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 256 L~l~~~~~~~--~lp~~~~-----------~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 321 (504)
++++.|+ ++ -+|..+. .+.+++.|.++..-+++-.|++++|.+..+| +.+.+|+.|-.|++++ +
T Consensus 83 v~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-N 160 (1255)
T KOG0444|consen 83 VIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-N 160 (1255)
T ss_pred Hhhhccc-cccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-c
Confidence 5555442 11 0111100 1115555666666666666666655555443 3345566666666665 3
Q ss_pred CcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCC-CCccceEEE
Q 038400 322 DLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNT-RPHLRRVVI 400 (504)
Q Consensus 322 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l 400 (504)
.+..+|+.+..+.+|++|.+++|+....-...+..+++|+.|.+++....... .+.... ..+|..+++
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N-----------~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN-----------IPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc-----------CCCchhhhhhhhhccc
Confidence 45556666666666666666665422111111222444555555443221110 111111 115555666
Q ss_pred ccCCCcccchhhhhcCCCCCccEEEeccCC----------------------CCCccCcCCCCCCCcceEecccCc-cCC
Q 038400 401 GEITQLLELPQWLLQGSTDTLQNLLIIDCP----------------------NFMALPRSLKDLEALETLFILGCP-KLS 457 (504)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~----------------------~l~~l~~~~~~l~~L~~L~l~~c~-~l~ 457 (504)
+. +.+..+|..+ -.+++|+.|+|+++. .++.+|..+..|+.|+.|.+.++. ..+
T Consensus 230 S~-N~Lp~vPecl--y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SE-NNLPIVPECL--YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cc-cCCCcchHHH--hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence 54 4566666665 455666666666652 233444444555555555544432 122
Q ss_pred cCccCCCCCCCcCeEeE
Q 038400 458 SLSEDMHHVTTLKSLTI 474 (504)
Q Consensus 458 ~l~~~~~~l~~L~~L~l 474 (504)
.+|.+++.+.+|+.+..
T Consensus 307 GiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred CCccchhhhhhhHHHHh
Confidence 45555555555555443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=6.6e-20 Score=168.71 Aligned_cols=225 Identities=29% Similarity=0.358 Sum_probs=170.2
Q ss_pred HhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 223 CISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
.++.+..++.|+.+++++..+|+.++.+..|+.|+.++|. +.++|.+++.+..|..++..+|++...
T Consensus 86 aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-------------~~el~~~i~~~~~l~dl~~~~N~i~sl 152 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-------------LKELPDSIGRLLDLEDLDATNNQISSL 152 (565)
T ss_pred HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-------------eeecCchHHHHhhhhhhhccccccccC
Confidence 3444455555555555555555555555555555555443 777888888888888888888888888
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGE 382 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 382 (504)
|+++.++.+|..|++.++ .+.++|+..-+++.|++|+...| .++.+|+.++.+.+|+.|++..|.....
T Consensus 153 p~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~l--------- 221 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFL--------- 221 (565)
T ss_pred chHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccC---------
Confidence 888888888888888884 45566666666888888887665 5788999999999999999888865542
Q ss_pred CCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccC
Q 038400 383 GSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSED 462 (504)
Q Consensus 383 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 462 (504)
+...++..|++|+++. ..++-+|.... ..+++|..|+++++ .++++|..+..+.+|++|+++++ .+..+|..
T Consensus 222 ----Pef~gcs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp~s 293 (565)
T KOG0472|consen 222 ----PEFPGCSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLPYS 293 (565)
T ss_pred ----CCCCccHHHHHHHhcc-cHHHhhHHHHh-cccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCCcc
Confidence 2333344688888776 46777776662 47899999999998 68999999999999999999987 79999999
Q ss_pred CCCCCCcCeEeEeCCCch
Q 038400 463 MHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 463 ~~~l~~L~~L~l~~c~~l 480 (504)
++++ .|+.|.+.|+|.-
T Consensus 294 Lgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccc-eeeehhhcCCchH
Confidence 9999 9999999999964
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=9.7e-18 Score=161.39 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=122.4
Q ss_pred hcCCCcccEEEeCCCCccccC-ccccCCCCcCeeeccCCCCccccCcceeccccccCchhh-hccccCCeeeeccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCP-RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDI-RHLTSLRAFALTTKQKSL 301 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~ 301 (504)
|..-.++++|+|++|.|+.+- ..+..+.+|..|.|+.|. +..||... .+|++|+.|++..|.+..
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-------------ittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-------------ITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCc-------------ccccCHHHhhhcchhhhhhccccceee
Confidence 333344555555555544332 234444445555555443 55555443 347777777777666554
Q ss_pred c-cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccc-ccc
Q 038400 302 Q-ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNIN-MEM 379 (504)
Q Consensus 302 ~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~-~~~ 379 (504)
. ...|.+|++||.|.+..|....--...+-.+.++++|+|..|.....-..|+-+++.|+.|+++.|.+-.+... +.+
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 4 33466666666666665432222223344556666666665542222234555566666666665543332210 000
Q ss_pred cCCCC-----------CCCCCCC-CCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCC---CCccCcCCCCCCC
Q 038400 380 EGEGS-----------NHDRKNT-RPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPN---FMALPRSLKDLEA 444 (504)
Q Consensus 380 ~~~~~-----------~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~---l~~l~~~~~~l~~ 444 (504)
...-. ..+.... ...|+.|.++.. .+..+....+ ..+++|+.|+|+++.. +++-...+..|++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 00000 0000000 113444444441 2222222211 3457777777776642 2222344677888
Q ss_pred cceEecccCccCCcCcc-CCCCCCCcCeEeEeCCCch
Q 038400 445 LETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 445 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l 480 (504)
|+.|.+.|+ +++.+|. .|.++++|++|++.+++--
T Consensus 394 LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 394 LRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred hhheeecCc-eeeecchhhhccCcccceecCCCCcce
Confidence 888888886 6888775 4678888888888887643
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.5e-18 Score=159.94 Aligned_cols=261 Identities=22% Similarity=0.292 Sum_probs=160.4
Q ss_pred hhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccc
Q 038400 196 LLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275 (504)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~ 275 (504)
.|.+|+.|+.+.+..+.+. ....+....+.++.+||+++|+++++|..+..+++|.+||+++| .+..+|.+++...
T Consensus 223 ef~gcs~L~Elh~g~N~i~---~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE---MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLH 298 (565)
T ss_pred CCCccHHHHHHHhcccHHH---hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccce
Confidence 5666666666666544332 34455566888889999999998888988888888999999876 5777776654110
Q ss_pred cc------------------------------------------------cCc----hhhhccccCCeeeeccccccccc
Q 038400 276 LE------------------------------------------------ELP----KDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 276 l~------------------------------------------------~lp----~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+. ..| ..+..+.+.+.|+++.-+....|
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 00 001 12233445556665555544444
Q ss_pred ccCCCCCC---ccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcccccccccc
Q 038400 304 SGIRSLGS---LRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEME 380 (504)
Q Consensus 304 ~~~~~l~~---L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 380 (504)
..+..... ....+++.| .+.++|..+..+..+.+.-+..+..+..+|..++.+++|..|++++|.--.++
T Consensus 379 dEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP------ 451 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP------ 451 (565)
T ss_pred HHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc------
Confidence 33322222 445555553 45556666555555554444444445555555666666666666655321111
Q ss_pred CCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcC-CCCCCCcceEecccCccCCcC
Q 038400 381 GEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRS-LKDLEALETLFILGCPKLSSL 459 (504)
Q Consensus 381 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l 459 (504)
.+....-.|+.|+++.. .+..+|... .....|+.+..++ ..+.+++.. +.+|.+|.+|++.++ .+..+
T Consensus 452 ------~e~~~lv~Lq~LnlS~N-rFr~lP~~~--y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~I 520 (565)
T KOG0472|consen 452 ------EEMGSLVRLQTLNLSFN-RFRMLPECL--YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQI 520 (565)
T ss_pred ------hhhhhhhhhheeccccc-ccccchHHH--hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhC
Confidence 11111114566666553 566677665 3344455554444 367777655 899999999999886 78999
Q ss_pred ccCCCCCCCcCeEeEeCCC
Q 038400 460 SEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 460 ~~~~~~l~~L~~L~l~~c~ 478 (504)
|+.++++++|++|++.++|
T Consensus 521 Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ChhhccccceeEEEecCCc
Confidence 9999999999999999998
No 11
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.62 E-value=5.8e-17 Score=154.44 Aligned_cols=106 Identities=34% Similarity=0.693 Sum_probs=83.2
Q ss_pred cccCCCCCCCcchHHHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhh----h-------ccCCchhHHHhhhhCCC
Q 038400 3 CAFKEERDKHPNLIKIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLE----Q-------KESGILPILRLSYYQLP 71 (504)
Q Consensus 3 ~Af~~~~~~~~~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~----~-------~~~~i~~~L~~sy~~L~ 71 (504)
.|+......++.+.+++++|+++|+|+||||+++|++|+.+.+..+|+... . ....+..++.+||+.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~ 248 (287)
T PF00931_consen 169 RAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP 248 (287)
T ss_dssp HHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC
Confidence 344443223466788999999999999999999999997655777898721 1 13458899999999999
Q ss_pred hhhHhhhhhhcccCCCCccChHHHHHHHHHccCcccC
Q 038400 72 PHLKQCVAYCSIFPKDYPFDSFSLVQFWMAHGLLQSH 108 (504)
Q Consensus 72 ~~~k~~fl~~a~fp~~~~i~~~~li~~w~~~g~~~~~ 108 (504)
++.|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 249 ~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 249 DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999998765
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=6.4e-15 Score=142.24 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=143.7
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccC-c
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-P 280 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p 280 (504)
..++|+++++... .+...+|.++++|+.+++..|.++.+|.......||+.|+|.+|. +.++ .
T Consensus 79 ~t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-------------I~sv~s 142 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-------------ISSVTS 142 (873)
T ss_pred ceeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-------------cccccH
Confidence 4556777755433 333455677777777777777777777777777777777777663 2222 1
Q ss_pred hhhhccccCCeeeeccccccccc-ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCC
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQE-SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLS 358 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~ 358 (504)
+.+..++.|+.||++.|.+...+ +.+..-.++++|++++|....---..+..+.+|..|.|+.|. ++.+|. .+.+++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLP 221 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcc
Confidence 23455566666666665554443 233344556666666644332223445555566666666553 444443 344466
Q ss_pred CccEEEeccCCCccccc----------cccccCC--CCC-CCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEE
Q 038400 359 SLETLFLYKCESLDLNI----------NMEMEGE--GSN-HDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNL 424 (504)
Q Consensus 359 ~L~~L~l~~~~~l~~~~----------~~~~~~~--~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L 424 (504)
+|+.|++..|..-...+ +..+... ... ........++++|++... .+..+ ..|+ .+++.|+.|
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~l--fgLt~L~~L 298 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWL--FGLTSLEQL 298 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccc--cccchhhhh
Confidence 66666665553211100 0000000 000 111222236667776653 33333 2455 567888888
Q ss_pred EeccCCCCCccCcCCCCCCCcceEecccCccCCcCcc-CCCCCCCcCeEeEeCCC
Q 038400 425 LIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSE-DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 425 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 478 (504)
+++++..-+.-+.+....++|+.|+++.+ .++++++ .+..+..|++|.++.+.
T Consensus 299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc
Confidence 88877433334566777788889988886 5666654 46667888888888764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=8.3e-17 Score=162.93 Aligned_cols=284 Identities=24% Similarity=0.279 Sum_probs=170.5
Q ss_pred eEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeee
Q 038400 178 VRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLD 257 (504)
Q Consensus 178 ~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~ 257 (504)
+..+.+.++.. ..++..+..+.+|+.|.++.+.+. ..+....++.+|++|.|.+|.+..+|.++..+++|++|+
T Consensus 47 L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~i~----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNYIR----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeecccccc--ccCCchhhhHHHHhhcccchhhHh----hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 34555555444 355666777778888877754432 233556778888888888888888888888888888888
Q ss_pred ccCCCCccccCccee-----------------------------------------------------------------
Q 038400 258 LSGNSKIKKLPKSIY----------------------------------------------------------------- 272 (504)
Q Consensus 258 l~~~~~~~~lp~~~~----------------------------------------------------------------- 272 (504)
+++|. ...+|.-+.
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence 88773 444443211
Q ss_pred --------ccccccC---------------chh----hhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCccc
Q 038400 273 --------CLELEEL---------------PKD----IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEH 325 (504)
Q Consensus 273 --------~~~l~~l---------------p~~----i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 325 (504)
++.+..+ |-. -..-.+|++++++++.....|..++.+.+|+.++..+| .+..
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHh
Confidence 0000000 000 00112455666665555555666788888899888774 4577
Q ss_pred chhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccc------------------c---ccC---
Q 038400 326 LFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINM------------------E---MEG--- 381 (504)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~------------------~---~~~--- 381 (504)
+|..+..+++|+.|.+..|. +..+|+....++.|++|++..|.....+... . ..+
T Consensus 279 lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 88888888888888887764 7777777777888888888866532221100 0 000
Q ss_pred --------------CCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcce
Q 038400 382 --------------EGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALET 447 (504)
Q Consensus 382 --------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 447 (504)
.....+....+.+|+.|+++. ..+..+|.... ..+..|+.|+|+++ .++.+|..+..++.|++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~-~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKL-RKLEELEELNLSGN-KLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHH-hchHHhHHHhcccc-hhhhhhHHHHhhhhhHH
Confidence 000111222344788888876 45677776543 56677777888776 45556555555555555
Q ss_pred EecccCccCCcCccCCCCCCCcCeEeEe
Q 038400 448 LFILGCPKLSSLSEDMHHVTTLKSLTIG 475 (504)
Q Consensus 448 L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 475 (504)
|...++ .+..+| .+..++.|+.+|++
T Consensus 435 L~ahsN-~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 435 LRAHSN-QLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred HhhcCC-ceeech-hhhhcCcceEEecc
Confidence 555443 344444 34445555555554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-16 Score=130.60 Aligned_cols=133 Identities=27% Similarity=0.383 Sum_probs=111.7
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+.+...|.+++|.++.+|..+..+.+|+.|++.+|+ ++++|..|+.+++|++|++.-|.....|.+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-------------ie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-------------IEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-------------hhhcChhhhhchhhhheecchhhhhcCccc
Confidence 4566777889999999999999999999999999876 888888999999999999998888888889
Q ss_pred CCCCCCccEEeeeCCC-CcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcc
Q 038400 306 IRSLGSLRCLTISGCG-DLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~ 372 (504)
|+.++-|+.|++..++ +-..+|..+-.|+.|+-|.+++| ....+|..++++++|+.|.+..+.-++
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh
Confidence 9999999999998754 33456777778888998999887 478888889999999999888775443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=3.1e-14 Score=149.14 Aligned_cols=225 Identities=19% Similarity=0.285 Sum_probs=147.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
++++.|.++++.+.. ++.. + ..+|++|++++|.++.+|..+. .+|+.|++++|. +..+|
T Consensus 199 ~~L~~L~Ls~N~Lts---LP~~-l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-------------L~~LP 257 (754)
T PRK15370 199 EQITTLILDNNELKS---LPEN-L--QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-------------ITELP 257 (754)
T ss_pred cCCcEEEecCCCCCc---CChh-h--ccCCCEEECCCCccccCChhhh--ccccEEECcCCc-------------cCcCC
Confidence 356666666554331 1111 1 1356666666666666665443 356666666654 55566
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCc
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSL 360 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L 360 (504)
..+. .+|+.|++++|.+...|..+. ++|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+ .++|
T Consensus 258 ~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL 327 (754)
T PRK15370 258 ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPETL--PPGL 327 (754)
T ss_pred hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCccc--cccc
Confidence 5543 478888888887776665443 57888888885 4566665443 468888888864 56676644 3678
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLK 440 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 440 (504)
+.|++++|..-.++ . .-+++|+.|+++++ .+..+|..+ .++|+.|++++| .+..+|..+.
T Consensus 328 ~~L~Ls~N~Lt~LP-------------~-~l~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N-~Lt~LP~~l~ 387 (754)
T PRK15370 328 KTLEAGENALTSLP-------------A-SLPPELQVLDVSKN-QITVLPETL----PPTITTLDVSRN-ALTNLPENLP 387 (754)
T ss_pred eeccccCCccccCC-------------h-hhcCcccEEECCCC-CCCcCChhh----cCCcCEEECCCC-cCCCCCHhHH
Confidence 88888887532211 0 11248999999986 566777655 368999999987 5777887553
Q ss_pred CCCCcceEecccCccCCcCccCCC----CCCCcCeEeEeCCCc
Q 038400 441 DLEALETLFILGCPKLSSLSEDMH----HVTTLKSLTIGGCPA 479 (504)
Q Consensus 441 ~l~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~l~~c~~ 479 (504)
++|+.|++++| .+..+|..+. .++++..|++.++|-
T Consensus 388 --~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 --AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 47999999987 5777776543 357889999999884
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3e-13 Score=141.01 Aligned_cols=246 Identities=21% Similarity=0.266 Sum_probs=152.2
Q ss_pred EEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeec
Q 038400 179 RHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDL 258 (504)
Q Consensus 179 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 258 (504)
..+.+..+.+. .++..+. .+++.|.+..+..... + ...++|++|++++|.++.+|.. ..+|+.|++
T Consensus 204 ~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt~L----P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 204 AVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSL----P---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred cEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCCCC----C---CCCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 34555555442 2343332 3678888876654411 1 1357788888888888887753 357788888
Q ss_pred cCCCCccccCcc--------eeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhc
Q 038400 259 SGNSKIKKLPKS--------IYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEI 330 (504)
Q Consensus 259 ~~~~~~~~lp~~--------~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 330 (504)
++|. +..+|.. +..+.+..+|.. +++|+.|++++|.+...+.. ..+|+.|++++| .+..+|.
T Consensus 270 s~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~-- 339 (788)
T PRK15387 270 FSNP-LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPT-- 339 (788)
T ss_pred cCCc-hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC-ccccccc--
Confidence 8773 4444431 113345555542 35677777777766554432 234666666664 3444543
Q ss_pred CCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccch
Q 038400 331 DQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELP 410 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 410 (504)
...+|+.|++++|. ++.+|.. .++|+.|++++|..-.++ ....+|+.|+++++ .+..+|
T Consensus 340 -lp~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP---------------~l~~~L~~LdLs~N-~Lt~LP 398 (788)
T PRK15387 340 -LPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLP---------------ALPSGLKELIVSGN-RLTSLP 398 (788)
T ss_pred -cccccceEecCCCc-cCCCCCC---CcccceehhhccccccCc---------------ccccccceEEecCC-cccCCC
Confidence 12467777777753 5566653 245666666665322110 11236888888874 566666
Q ss_pred hhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCCc
Q 038400 411 QWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCPA 479 (504)
Q Consensus 411 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 479 (504)
.. .++|+.|++++| .++.+|.. ..+|+.|++++| .++.+|..+.++++|+.|++++|+-
T Consensus 399 ~l-----~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 399 VL-----PSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred Cc-----ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 43 367899999887 46777753 346888899886 6888998888899999999999874
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.6e-13 Score=143.83 Aligned_cols=222 Identities=19% Similarity=0.290 Sum_probs=151.8
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELP 280 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp 280 (504)
.+...|.+.+..... ++..+ .+.|+.|++++|.++.+|..+. .+|++|++++|. +..+|
T Consensus 178 ~~~~~L~L~~~~Lts----LP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-------------LtsLP 236 (754)
T PRK15370 178 NNKTELRLKILGLTT----IPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-------------LTSIP 236 (754)
T ss_pred cCceEEEeCCCCcCc----CCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-------------cccCC
Confidence 345667666544331 11111 2468888888888888887654 478888888774 45555
Q ss_pred hhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCc
Q 038400 281 KDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSL 360 (504)
Q Consensus 281 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L 360 (504)
..+. .+|+.|++++|.+...|..+. ++|+.|++++| .+..+|..+. ++|+.|++++| .++.+|..+. ++|
T Consensus 237 ~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL 306 (754)
T PRK15370 237 ATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGI 306 (754)
T ss_pred hhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccch--hhH
Confidence 5443 368888888888776665443 57888888864 5667776553 57888888887 4667776442 468
Q ss_pred cEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCC
Q 038400 361 ETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLK 440 (504)
Q Consensus 361 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 440 (504)
+.|++++|....++ ...+++|+.|.++++ .++.+|..+ .++|+.|++++| .++.+|..+
T Consensus 307 ~~L~Ls~N~Lt~LP--------------~~l~~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~Ls~N-~L~~LP~~l- 365 (754)
T PRK15370 307 THLNVQSNSLTALP--------------ETLPPGLKTLEAGEN-ALTSLPASL----PPELQVLDVSKN-QITVLPETL- 365 (754)
T ss_pred HHHHhcCCccccCC--------------ccccccceeccccCC-ccccCChhh----cCcccEEECCCC-CCCcCChhh-
Confidence 88888877532211 011247999999886 577787655 378999999988 577788655
Q ss_pred CCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 441 DLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 441 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.++|+.|++++| .+..+|..+. .+|+.|++++|.
T Consensus 366 -p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 366 -PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred -cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC
Confidence 368999999998 6778887543 478888888875
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3.4e-15 Score=122.24 Aligned_cols=150 Identities=27% Similarity=0.405 Sum_probs=86.2
Q ss_pred cccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCc-cccCccC
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRL-ISLPPAI 354 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~l 354 (504)
+..+|..|..+.+|+.|++.+|++...|..++.++.|+.|+++- +.+..+|.++|.++.|+.|++++|..- ..+|..+
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 44455555555555555555555555555555555555555543 334444555555555555555544321 2344444
Q ss_pred CCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCc
Q 038400 355 KYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMA 434 (504)
Q Consensus 355 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 434 (504)
-.+..|+.|.++++ .++-+|..+ +.+++|+.|.++++ .+-+
T Consensus 124 f~m~tlralyl~dn------------------------------------dfe~lp~dv--g~lt~lqil~lrdn-dll~ 164 (264)
T KOG0617|consen 124 FYMTTLRALYLGDN------------------------------------DFEILPPDV--GKLTNLQILSLRDN-DLLS 164 (264)
T ss_pred hHHHHHHHHHhcCC------------------------------------CcccCChhh--hhhcceeEEeeccC-chhh
Confidence 44444444433333 345556666 67788888888877 3556
Q ss_pred cCcCCCCCCCcceEecccCccCCcCccCCCCC
Q 038400 435 LPRSLKDLEALETLFILGCPKLSSLSEDMHHV 466 (504)
Q Consensus 435 l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l 466 (504)
+|..++.+..|+.|.|.++ .++.+|+.++++
T Consensus 165 lpkeig~lt~lrelhiqgn-rl~vlppel~~l 195 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGN-RLTVLPPELANL 195 (264)
T ss_pred CcHHHHHHHHHHHHhcccc-eeeecChhhhhh
Confidence 7888888888888888886 677777655443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-14 Score=147.89 Aligned_cols=223 Identities=21% Similarity=0.245 Sum_probs=154.6
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
...+|++++++.+.+..+|+.++.+.+|+.+++.+|. +..+|..+..+.+|+.|.+..|...-.++.
T Consensus 239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-------------l~~lp~ri~~~~~L~~l~~~~nel~yip~~ 305 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR-------------LVALPLRISRITSLVSLSAAYNELEYIPPF 305 (1081)
T ss_pred ccccceeeecchhhhhcchHHHHhcccceEecccchh-------------HHhhHHHHhhhhhHHHHHhhhhhhhhCCCc
Confidence 3467888888888888888888888888888888775 566666666666777776666666666666
Q ss_pred CCCCCCccEEeeeCCCCcccchhhc--------------------------CCCCcccEEeeccCCCccccCccCCCCCC
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEI--------------------------DQLRVLRTLSIVCCPRLISLPPAIKYLSS 359 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~--------------------------~~l~~L~~L~l~~~~~l~~l~~~l~~l~~ 359 (504)
..+++.|++|++..+ ++..+|+.+ ..++.|+.|.+.+|......-+.+.+.++
T Consensus 306 le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 666677777766653 333333211 12345777777777655444455778889
Q ss_pred ccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCC
Q 038400 360 LETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSL 439 (504)
Q Consensus 360 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 439 (504)
|+.|++++|..-.++ .........|++|.++| ..++.+|..+ ..++.|+.|...++ .+..+| .+
T Consensus 385 LKVLhLsyNrL~~fp-----------as~~~kle~LeeL~LSG-NkL~~Lp~tv--a~~~~L~tL~ahsN-~l~~fP-e~ 448 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNSFP-----------ASKLRKLEELEELNLSG-NKLTTLPDTV--ANLGRLHTLRAHSN-QLLSFP-EL 448 (1081)
T ss_pred eeeeeecccccccCC-----------HHHHhchHHhHHHhccc-chhhhhhHHH--HhhhhhHHHhhcCC-ceeech-hh
Confidence 999999988532221 11111223688899998 5788999887 67788888887765 577888 58
Q ss_pred CCCCCcceEecccCccCCcCccCCCCC-CCcCeEeEeCCCc
Q 038400 440 KDLEALETLFILGCPKLSSLSEDMHHV-TTLKSLTIGGCPA 479 (504)
Q Consensus 440 ~~l~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~ 479 (504)
..++.|+.++++.+ .++.+--...-. ++|++|+++|++.
T Consensus 449 ~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 89999999999865 566432111122 8999999999985
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=2.5e-13 Score=131.53 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=100.4
Q ss_pred EEcCCCCccchhhhhcCCCCeeEEeeecCCccc-chHHHHHHhcCCCcccEEEeCCCCccc-------cCccccCCCCcC
Q 038400 183 FAAANASRKDFSSLLSDLGRVRTIVFSTDDEKI-SQSFVESCISKSQFLRVLNLSESAIEV-------CPRKIGNLKHMR 254 (504)
Q Consensus 183 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-------lp~~~~~l~~L~ 254 (504)
+.....+...+...+..+.+++.+.+.++.... ....+...+...+.|+.|+++++.+.. ++..+..+++|+
T Consensus 5 L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 84 (319)
T cd00116 5 LKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84 (319)
T ss_pred cccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCcee
Confidence 333344334455556666678888887665431 112234445566777888887776552 234456677888
Q ss_pred eeeccCCCCccccCcceeccccccCchhhhcccc---CCeeeeccccccc-----ccccCCCC-CCccEEeeeCCCCc--
Q 038400 255 YLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTS---LRAFALTTKQKSL-----QESGIRSL-GSLRCLTISGCGDL-- 323 (504)
Q Consensus 255 ~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~---L~~L~l~~~~~~~-----~~~~~~~l-~~L~~L~l~~~~~l-- 323 (504)
+|++++|.... ..+..+..+.+ |++|++++|.... ....+..+ ++|+.|++++|...
T Consensus 85 ~L~l~~~~~~~------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 85 ELDLSDNALGP------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred EEEccCCCCCh------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 88887764211 22333333433 7788877766542 11234455 77788888776533
Q ss_pred --ccchhhcCCCCcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCC
Q 038400 324 --EHLFEEIDQLRVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 324 --~~~~~~~~~l~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~ 369 (504)
..++..+..+++|++|++++|.... .++..+..+++|+.|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 1334455566777778777765321 233334455677777777774
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=6.3e-12 Score=131.27 Aligned_cols=181 Identities=22% Similarity=0.174 Sum_probs=123.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
..|+.|++++|.++.+|.. +++|++|++++|. +..+|... .+|+.|++++|.+...|.
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-------------L~~Lp~lp---~~L~~L~Ls~N~L~~LP~--- 339 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-------------LASLPALP---SELCKLWAYNNQLTSLPT--- 339 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCc-------------cccCCCCc---ccccccccccCccccccc---
Confidence 3455555666655555542 3456666666653 45555422 357788888888776553
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHD 387 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 387 (504)
...+|+.|++++| .+..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|..-.++
T Consensus 340 lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP------------- 398 (788)
T PRK15387 340 LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLP------------- 398 (788)
T ss_pred cccccceEecCCC-ccCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCC-------------
Confidence 2258999999985 56667753 3578888888874 6677764 357899999988533211
Q ss_pred CCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 388 RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
....+|+.|+++++ .+..+|... .+|+.|++++| .++.+|..+..+++|+.|++++|+.-...+
T Consensus 399 --~l~s~L~~LdLS~N-~LssIP~l~-----~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 399 --VLPSELKELMVSGN-RLTSLPMLP-----SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred --CcccCCCEEEccCC-cCCCCCcch-----hhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHH
Confidence 11247999999985 577777543 57889999887 578899999999999999999986544433
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=1.4e-12 Score=126.28 Aligned_cols=261 Identities=20% Similarity=0.171 Sum_probs=160.4
Q ss_pred eEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCccc---chHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCC
Q 038400 178 VRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKI---SQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNL 250 (504)
Q Consensus 178 ~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l 250 (504)
++.+.+..+.+... .+...+...+.++.+.+.+..... ........+..+++|+.|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 56667766655322 345556677889999887655431 11333456777899999999999986 344444444
Q ss_pred ---CCcCeeeccCCCCccccCcceeccccccCchhhhcc-ccCCeeeeccccccc-----ccccCCCCCCccEEeeeCCC
Q 038400 251 ---KHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHL-TSLRAFALTTKQKSL-----QESGIRSLGSLRCLTISGCG 321 (504)
Q Consensus 251 ---~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l-~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 321 (504)
++|++|++++|.. .. .....+...+..+ ++|+.|++++|.+.. ....+..+++|++|++++|.
T Consensus 105 ~~~~~L~~L~ls~~~~-~~-------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 105 LRSSSLQELKLNNNGL-GD-------RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred hccCcccEEEeeCCcc-ch-------HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4499999998851 10 1122344556677 899999999887662 23346677899999999976
Q ss_pred Ccc----cchhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCC
Q 038400 322 DLE----HLFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRP 393 (504)
Q Consensus 322 ~l~----~~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (504)
... .++..+..+++|+.|++++|... ..+...+..+++|++|++++|..-..
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-------------------- 236 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-------------------- 236 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH--------------------
Confidence 432 34455667789999999998632 23455667788999999998752210
Q ss_pred ccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCC----CccCcCCCCCCCcceEecccCccCCc----CccCCCC
Q 038400 394 HLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNF----MALPRSLKDLEALETLFILGCPKLSS----LSEDMHH 465 (504)
Q Consensus 394 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----l~~~~~~ 465 (504)
.+..+...+. ...+.|+.|++.+|... ..+...+..+++|+++++++|..-.. +...+..
T Consensus 237 -----------~~~~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 237 -----------GAAALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred -----------HHHHHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 0111111111 12356677777666321 12233344557777888777643221 2223333
Q ss_pred C-CCcCeEeEeCCC
Q 038400 466 V-TTLKSLTIGGCP 478 (504)
Q Consensus 466 l-~~L~~L~l~~c~ 478 (504)
. +.|+++++.+.|
T Consensus 305 ~~~~~~~~~~~~~~ 318 (319)
T cd00116 305 PGNELESLWVKDDS 318 (319)
T ss_pred cCCchhhcccCCCC
Confidence 4 567777766554
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=3.3e-11 Score=128.59 Aligned_cols=154 Identities=27% Similarity=0.305 Sum_probs=112.6
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCC--ccccCc-cccCCCCcCeeeccCCCCccccCcceeccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESA--IEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLE 275 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~ 275 (504)
+...+|...+.++..... .. -...+.|+.|-+.++. +..++. .+..++.|++||+++|. .
T Consensus 521 ~~~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------------~ 583 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------------S 583 (889)
T ss_pred chhheeEEEEeccchhhc----cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------------c
Confidence 335566666654432211 11 1234579999998886 555554 47889999999999875 4
Q ss_pred cccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCC--CccccCcc
Q 038400 276 LEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCP--RLISLPPA 353 (504)
Q Consensus 276 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~--~l~~l~~~ 353 (504)
+..||..|+.|.+||+|+++++.+...|.++++|..|.+|++..+..+..+|.....|++|++|.+..-. .-...-..
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh
Confidence 6778888999999999999999999999999999999999999988888777777779999999997643 11122233
Q ss_pred CCCCCCccEEEeccCC
Q 038400 354 IKYLSSLETLFLYKCE 369 (504)
Q Consensus 354 l~~l~~L~~L~l~~~~ 369 (504)
+.++.+|+.+......
T Consensus 664 l~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 664 LENLEHLENLSITISS 679 (889)
T ss_pred hhcccchhhheeecch
Confidence 4566666666665443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.01 E-value=6.2e-11 Score=109.95 Aligned_cols=221 Identities=20% Similarity=0.231 Sum_probs=121.0
Q ss_pred HHHHhcCCCcccEEEeCCCCccc-cCccccCCCCcCeeeccCCCCccccCccee------------ccccccCch-hhhc
Q 038400 220 VESCISKSQFLRVLNLSESAIEV-CPRKIGNLKHMRYLDLSGNSKIKKLPKSIY------------CLELEELPK-DIRH 285 (504)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~------------~~~l~~lp~-~i~~ 285 (504)
++..|+.++.||.|||+.|.|+. -|..+..+..|..|-+.++.+|+++|.... ...+..+++ .+..
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 34444455555555555555542 234444455544444444334444443321 122445443 4678
Q ss_pred cccCCeeeecccccccccc-cCCCCCCccEEeeeCCC------------CcccchhhcCCCCcccEEee-----------
Q 038400 286 LTSLRAFALTTKQKSLQES-GIRSLGSLRCLTISGCG------------DLEHLFEEIDQLRVLRTLSI----------- 341 (504)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~------------~l~~~~~~~~~l~~L~~L~l----------- 341 (504)
|++|..|.+..|.+..... .+..+..++++.+.-+. .....|.+++.+.-..-..+
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~ 242 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR 242 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence 8999999998887776654 67788888888765543 11111222222111111111
Q ss_pred --------------ccCCCccccC-ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCc
Q 038400 342 --------------VCCPRLISLP-PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQL 406 (504)
Q Consensus 342 --------------~~~~~l~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 406 (504)
..|......| ..+.++++|+.|++++|..-.+. .........+++|.+.+ .++
T Consensus 243 kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-----------~~aFe~~a~l~eL~L~~-N~l 310 (498)
T KOG4237|consen 243 KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-----------DGAFEGAAELQELYLTR-NKL 310 (498)
T ss_pred hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-----------hhhhcchhhhhhhhcCc-chH
Confidence 1111111112 23678899999999988654432 11122223677777766 355
Q ss_pred ccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccC
Q 038400 407 LELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGC 453 (504)
Q Consensus 407 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 453 (504)
+.+...++ ..++.|+.|+|.++....-.|..|..+.+|.+|.+-.+
T Consensus 311 ~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 311 EFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 55554443 56688888888887544455777888888888887654
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.4e-11 Score=119.24 Aligned_cols=171 Identities=26% Similarity=0.295 Sum_probs=129.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIR 307 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 307 (504)
..-...|++.|.+..+|..+..+..|..+.++.|. +..+|..+.++..|.+|+++.|+....|..+.
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-------------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-------------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhcc-------------ceecchhhhhhhHHHHhhhccchhhcCChhhh
Confidence 33455688888888888888888888888888775 88888899999999999999999988888887
Q ss_pred CCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCC
Q 038400 308 SLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHD 387 (504)
Q Consensus 308 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 387 (504)
.|+ |+.|-+++ ++++.+|+.++.+..|..|+.+.|. +..+|..++++.+|+.|.+..|.-+..+
T Consensus 142 ~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp------------- 205 (722)
T KOG0532|consen 142 DLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLP------------- 205 (722)
T ss_pred cCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCC-------------
Confidence 775 88888877 5788899999988999999999874 8889999999999999999888655432
Q ss_pred CCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 388 RKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 388 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
.......|..|++++ +++..+|..+ ..+..|++|.|.+++
T Consensus 206 ~El~~LpLi~lDfSc-Nkis~iPv~f--r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 206 EELCSLPLIRLDFSC-NKISYLPVDF--RKMRHLQVLQLENNP 245 (722)
T ss_pred HHHhCCceeeeeccc-Cceeecchhh--hhhhhheeeeeccCC
Confidence 111133455555553 4555566555 455666666665553
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1e-10 Score=109.96 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=19.0
Q ss_pred CCCCccEEEeccCCCCCccCc--CCCCCCCcceEeccc
Q 038400 417 STDTLQNLLIIDCPNFMALPR--SLKDLEALETLFILG 452 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 452 (504)
.+++|++|++..++ +.+++. .+..+++|+.|.+..
T Consensus 299 ~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 299 TFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 45777777776664 322221 244556666666543
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-11 Score=112.72 Aligned_cols=233 Identities=19% Similarity=0.218 Sum_probs=140.3
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceeccccccC-chhhhccccCCeeeecc-ccccccc-
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL-PKDIRHLTSLRAFALTT-KQKSLQE- 303 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l-p~~i~~l~~L~~L~l~~-~~~~~~~- 303 (504)
..-..++|..|.|+.+|+ .++.+++||.|||++|. ++.| |..+..+.+|-.|-+.+ |.+...+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-------------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-------------ISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc-------------hhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 345678999999999985 68999999999999885 4444 44566666666666654 6665554
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc-cCCCCCCccEEEeccCCCcccc---c----
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP-AIKYLSSLETLFLYKCESLDLN---I---- 375 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~~~~l~~~---~---- 375 (504)
..|++|..||.|.+.-|...-...+.+..+++|..|.+.+|. +..++. .+..+..++.+.+..++..... |
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 346777777777776654433344566777777777777753 555554 5666666777666655511100 0
Q ss_pred ----cccccC----------------------------------CCCCCCC------CCCCCccceEEEccCCCcccc-h
Q 038400 376 ----NMEMEG----------------------------------EGSNHDR------KNTRPHLRRVVIGEITQLLEL-P 410 (504)
Q Consensus 376 ----~~~~~~----------------------------------~~~~~~~------~~~~~~L~~L~l~~~~~l~~~-~ 410 (504)
.+...+ ....... ....++|+.|++++. .++.+ +
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~ 291 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIED 291 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhh
Confidence 000000 0000000 011225566666653 33333 2
Q ss_pred hhhhcCCCCCccEEEeccCCCCCccC-cCCCCCCCcceEecccCccCCcCccCCCCCCCcCeEeEeCCC
Q 038400 411 QWLLQGSTDTLQNLLIIDCPNFMALP-RSLKDLEALETLFILGCPKLSSLSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 411 ~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 478 (504)
.|+ ..+..++.|.|..+ .++.+. ..|.++..|+.|++.++....--|..|..+.+|.+|.+-.+|
T Consensus 292 ~aF--e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 292 GAF--EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhh--cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 334 44556666666554 344333 346778888888888875444556677788888888887665
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=9.6e-11 Score=109.57 Aligned_cols=288 Identities=19% Similarity=0.213 Sum_probs=173.3
Q ss_pred CCeEEEEEEcCCCCcc-chhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCC-cc--ccCccccCCC
Q 038400 176 KRVRHLSFAAANASRK-DFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESA-IE--VCPRKIGNLK 251 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~lp~~~~~l~ 251 (504)
.+++.+++.++..... ........++++..|.+.++. .+++......-..++.|+.|++..|. ++ .+-.....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4567777777644222 334445678888888777554 56677777777788999999998853 44 2222445788
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc---ccCCCCCCccEEeeeCCCCcccc--
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE---SGIRSLGSLRCLTISGCGDLEHL-- 326 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~-- 326 (504)
+|+||++++|..++. ..++.+ ...+..++.+..++|...... ..-..+.-+..+++..|..++..
T Consensus 217 kL~~lNlSwc~qi~~-------~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG-------NGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred hHHHhhhccCchhhc-------CcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 999999998875542 112222 223333455544443322111 01122333444555566544432
Q ss_pred hhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCC
Q 038400 327 FEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEIT 404 (504)
Q Consensus 327 ~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 404 (504)
...-.....|+.|+.++|..++..+ ....+.++|+.|.+++|..+... .....+...+.|+.+++.+|.
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---------~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---------GFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---------hhhhhhcCChhhhhhcccccc
Confidence 1222346677888887777654322 22346678888888888754321 112233344578888888776
Q ss_pred CcccchhhhhcCCCCCccEEEeccCCCCCcc-----CcCCCCCCCcceEecccCccCCc-CccCCCCCCCcCeEeEeCCC
Q 038400 405 QLLELPQWLLQGSTDTLQNLLIIDCPNFMAL-----PRSLKDLEALETLFILGCPKLSS-LSEDMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 405 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~ 478 (504)
...+-...-....++.|+.|.++.|..++.. ..+-.++..|+.+.+++|+.+.+ .-+.+..+++|+.+++.+|.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 5554322223357788999999888766544 34446677899999999987664 22335577899999999888
Q ss_pred chhhh
Q 038400 479 ALSER 483 (504)
Q Consensus 479 ~l~~~ 483 (504)
..++-
T Consensus 438 ~vtk~ 442 (483)
T KOG4341|consen 438 DVTKE 442 (483)
T ss_pred hhhhh
Confidence 76553
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.8e-09 Score=106.36 Aligned_cols=131 Identities=30% Similarity=0.411 Sum_probs=98.2
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCC-CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLK-HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+.....++.|++.++.+..+|.....+. +|+.|++++|. +..+|..++.+++|+.|+++.|.+...
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-------------i~~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-------------IESLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-------------hhhhhhhhhccccccccccCCchhhhh
Confidence 3344778888888888888888888885 88888888775 677777788888888888888888877
Q ss_pred cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCC
Q 038400 303 ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+...+.+++|+.|++++ +.+..+|..++.+..|++|.+.+|. ....+..+.++.++..+.+..+.
T Consensus 179 ~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 179 PKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCce
Confidence 76666888888888888 4566777766677778888888764 44455556777777777655543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=2.2e-10 Score=111.18 Aligned_cols=212 Identities=28% Similarity=0.364 Sum_probs=160.3
Q ss_pred EEEeCCCCccccCcccc--CCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCC
Q 038400 232 VLNLSESAIEVCPRKIG--NLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSL 309 (504)
Q Consensus 232 ~L~l~~~~~~~lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l 309 (504)
.|.|++-.+..+|..-. .+.--...|++.|+ +.++|..+..+..|+.+.++.|.+-..+..+.++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-------------~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L 120 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-------------FSELPEEACAFVSLESLILYHNCIRTIPEAICNL 120 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc-------------cccCchHHHHHHHHHHHHHHhccceecchhhhhh
Confidence 45666666666664332 33444567888776 8899999999999999999999988888899999
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 389 (504)
..|..|+++.| .+..+|..+..++ |+.|-+++| +++.+|..++.+..|..|+.+.|...... ...
T Consensus 121 ~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slp------------sql 185 (722)
T KOG0532|consen 121 EALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLP------------SQL 185 (722)
T ss_pred hHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhch------------HHh
Confidence 99999999985 5677888887776 888888875 69999999999999999999998654432 122
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCccCC---CCC
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLSEDM---HHV 466 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~l 466 (504)
....+|+.|.+.. ..+..+|... .. =.|..|+++ |+.+..+|..|..|..|++|.|.+++ |++-|..+ +..
T Consensus 186 ~~l~slr~l~vrR-n~l~~lp~El--~~-LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 186 GYLTSLRDLNVRR-NHLEDLPEEL--CS-LPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKV 259 (722)
T ss_pred hhHHHHHHHHHhh-hhhhhCCHHH--hC-Cceeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccce
Confidence 2233677777776 4566777666 23 347788886 45788899999999999999998775 77766543 234
Q ss_pred CCcCeEeEeCC
Q 038400 467 TTLKSLTIGGC 477 (504)
Q Consensus 467 ~~L~~L~l~~c 477 (504)
.-.|+|++.-|
T Consensus 260 HIFKyL~~qA~ 270 (722)
T KOG0532|consen 260 HIFKYLSTQAC 270 (722)
T ss_pred eeeeeecchhc
Confidence 56678888888
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=2.4e-09 Score=91.90 Aligned_cols=125 Identities=30% Similarity=0.353 Sum_probs=38.3
Q ss_pred CCcccEEEeCCCCccccCcccc-CCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 227 SQFLRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
...++.|+|+++.|+.+. .++ .+.+|+.|++++|. +..++ ++..+++|+.|++++|.+......
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-------------I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-------------ITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---------------S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC-------------Ccccc-CccChhhhhhcccCCCCCCccccc
Confidence 344566666666666542 343 45666666666654 33332 344566666666666666554333
Q ss_pred C-CCCCCccEEeeeCCCC--cccchhhcCCCCcccEEeeccCCCccccC----ccCCCCCCccEEEeccC
Q 038400 306 I-RSLGSLRCLTISGCGD--LEHLFEEIDQLRVLRTLSIVCCPRLISLP----PAIKYLSSLETLFLYKC 368 (504)
Q Consensus 306 ~-~~l~~L~~L~l~~~~~--l~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~~l~~l~~L~~L~l~~~ 368 (504)
+ ..+++|++|++++|.. +..+ ..+..+++|+.|++.+|+.. ..+ ..+..+|+|+.||-...
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 3 2466666666665431 2222 34566777777777777632 222 13445677777765443
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=8.3e-09 Score=103.00 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=139.9
Q ss_pred cEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccc-cCCeeeecccccccccccCCCC
Q 038400 231 RVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLT-SLRAFALTTKQKSLQESGIRSL 309 (504)
Q Consensus 231 ~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~~~l 309 (504)
..+++..+.+...+..+..+.+++.|++.++. +..+|.....+. +|+.|++++|.+...+..+..+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-------------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l 162 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNN-------------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcc-------------cccCccccccchhhcccccccccchhhhhhhhhcc
Confidence 35777777776556667777889999999876 777877777785 9999999999988887778999
Q ss_pred CCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCccccccccccCCCCCCCCC
Q 038400 310 GSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRK 389 (504)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 389 (504)
++|+.|++++| .+..+|...+.+++|+.|++++| .+..+|..+..+..|++|.++++...+.. ...
T Consensus 163 ~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~------------~~~ 228 (394)
T COG4886 163 PNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELL------------SSL 228 (394)
T ss_pred ccccccccCCc-hhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecc------------hhh
Confidence 99999999995 56677777779999999999997 48888887666777999999988533321 111
Q ss_pred CCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCCcceEecccCccCCcCc
Q 038400 390 NTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEALETLFILGCPKLSSLS 460 (504)
Q Consensus 390 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 460 (504)
....++..+.+.+ ..+..++..+ ..+++++.|+++++ .++.++. ++.+.+|+.|++++......+|
T Consensus 229 ~~~~~l~~l~l~~-n~~~~~~~~~--~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 229 SNLKNLSGLELSN-NKLEDLPESI--GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhcccccccccCC-ceeeeccchh--ccccccceeccccc-ccccccc-ccccCccCEEeccCccccccch
Confidence 1112333343332 2233333444 55666777777765 4555555 6777777777777765444444
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.5e-09 Score=97.66 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=124.4
Q ss_pred CCeEEEEEEcCCCCccchhhhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCcc--ccCCCCc
Q 038400 176 KRVRHLSFAAANASRKDFSSLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRK--IGNLKHM 253 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~--~~~l~~L 253 (504)
+++|.+++.++........+....|++++.|+++.+-+. .......+...+++|+.|+++.|.+....++ -..+.+|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456778887776643322357788999999999865432 2334456678899999999999988744333 3467899
Q ss_pred CeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc-cccccccCCCCCCccEEeeeCCCCcccch--hhc
Q 038400 254 RYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ-KSLQESGIRSLGSLRCLTISGCGDLEHLF--EEI 330 (504)
Q Consensus 254 ~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~ 330 (504)
+.|.++.|. .+...+-.-...+++|+.|++..|. +........-++.|+.|+|++|+.+. ++ ...
T Consensus 200 K~L~l~~CG-----------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~ 267 (505)
T KOG3207|consen 200 KQLVLNSCG-----------LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKV 267 (505)
T ss_pred heEEeccCC-----------CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccc
Confidence 999999985 1133333344567889999998774 32223334557788999998866443 33 457
Q ss_pred CCCCcccEEeeccCCCccc--cCcc-----CCCCCCccEEEeccCCCcc
Q 038400 331 DQLRVLRTLSIVCCPRLIS--LPPA-----IKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~--l~~~-----l~~l~~L~~L~l~~~~~l~ 372 (504)
+.++.|+.|+++.|. +.+ .|+. ...+++|++|++..|...+
T Consensus 268 ~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcccc
Confidence 788889988888774 332 2332 3567888899888887643
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=3.5e-08 Score=84.70 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=50.5
Q ss_pred CCCCeeEEeeecCCcccchHHHHHHhc-CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 199 DLGRVRTIVFSTDDEKISQSFVESCIS-KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
+..+++.|++.++.+.... .++ .+.+|++|++++|.++.++ .+..+++|+.|++++|. +.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-----~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-------------I~ 77 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-----NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-------------IS 77 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----------------
T ss_pred ccccccccccccccccccc-----chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-------------CC
Confidence 4456788888876654221 133 5678999999999998774 57788999999999886 77
Q ss_pred cCchhhh-ccccCCeeeeccccccccc--ccCCCCCCccEEeeeCCCCccc---chhhcCCCCcccEEeeccC
Q 038400 278 ELPKDIR-HLTSLRAFALTTKQKSLQE--SGIRSLGSLRCLTISGCGDLEH---LFEEIDQLRVLRTLSIVCC 344 (504)
Q Consensus 278 ~lp~~i~-~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~---~~~~~~~l~~L~~L~l~~~ 344 (504)
.++..+. .+++|++|++++|.+.... ..+..+++|+.|++.+|+.... =...+..+|+|+.||-...
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 7766553 6899999999988876542 3467789999999998753321 1134567888998876543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.3e-08 Score=91.54 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCCCccEEEeccCCCCCcc--CcCCCCCCCcceEecccCc
Q 038400 417 STDTLQNLLIIDCPNFMAL--PRSLKDLEALETLFILGCP 454 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~ 454 (504)
.+-+|.+|+++++. ++.+ -.+++++|+|+.+.+.++|
T Consensus 372 KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 44567777777763 3332 2357788888888888775
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=7.6e-09 Score=92.92 Aligned_cols=127 Identities=24% Similarity=0.231 Sum_probs=92.4
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
.+.|..|||++|.|+.+-+++.-++.++.|++++|. +..+.. +..+++|++|++++|........-
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-------------i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-------------IRTVQN-LAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-------------eeeehh-hhhcccceEeecccchhHhhhhhH
Confidence 456888888888888888888888888888888875 444433 667888888888888776655444
Q ss_pred CCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEEEeccCCC
Q 038400 307 RSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 307 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~~~~ 370 (504)
.++-|.++|.+++| .++.+ .+++++-+|..|++.+|. +..+. ..++++|-|+.+.+.+|+.
T Consensus 349 ~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 56778888888874 33333 567778888888888874 44332 3578888888888888764
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.6e-09 Score=97.11 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=95.1
Q ss_pred cCCeeeecccccccc--cccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccC--ccCCCCCCccEE
Q 038400 288 SLRAFALTTKQKSLQ--ESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLP--PAIKYLSSLETL 363 (504)
Q Consensus 288 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~l~~l~~L~~L 363 (504)
.|++||+++..+... ...+..+.+|+.|.+.|......+...+.+-.+|+.|++++|..+++.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555554433221 1224555666666666655444455555566666667776666555322 234556667777
Q ss_pred EeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccc-hhhhhcCCCCCccEEEeccCCCCCc-cCcCCCC
Q 038400 364 FLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLEL-PQWLLQGSTDTLQNLLIIDCPNFMA-LPRSLKD 441 (504)
Q Consensus 364 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~ 441 (504)
++++|.-.+... ......-.++|..|+++||..--.. ........+|+|..|+|++|..++. +...+..
T Consensus 266 NlsWc~l~~~~V---------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 266 NLSWCFLFTEKV---------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred CchHhhccchhh---------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 777664222100 0111111235666666665321111 1112235667777777777766553 2334566
Q ss_pred CCCcceEecccCccCCcCcc---CCCCCCCcCeEeEeCCC
Q 038400 442 LEALETLFILGCPKLSSLSE---DMHHVTTLKSLTIGGCP 478 (504)
Q Consensus 442 l~~L~~L~l~~c~~l~~l~~---~~~~l~~L~~L~l~~c~ 478 (504)
++.|++|.++.|-.+- |. .+...|+|.+|++.+|-
T Consensus 337 f~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 7777777777774332 22 24456777777777764
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=6.1e-09 Score=97.75 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=173.5
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCc-c--ccCccccCCCCcCeeeccCCCCccccCcceeccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAI-E--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELE 277 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~ 277 (504)
..||.|++.++. .........+..+++++..|++.++.. + .+-+.-..+++|++|++..|..++.. .++
T Consensus 138 g~lk~LSlrG~r-~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCR-AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-------SLK 209 (483)
T ss_pred cccccccccccc-cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-------HHH
Confidence 468888887543 344555666777889999999888862 2 22233457889999999987654421 122
Q ss_pred cCchhhhccccCCeeeecccccccc---cccCCCCCCccEEeeeCCCCcc--cchhhcCCCCcccEEeeccCCCccccC-
Q 038400 278 ELPKDIRHLTSLRAFALTTKQKSLQ---ESGIRSLGSLRCLTISGCGDLE--HLFEEIDQLRVLRTLSIVCCPRLISLP- 351 (504)
Q Consensus 278 ~lp~~i~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~l~- 351 (504)
. -...+++|++|+++.+..... .....++..++.+...||...+ .+-..-+....+..+++..|..++...
T Consensus 210 ~---la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 210 Y---LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred H---HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 1 234678899999987653222 2335666778888777876443 222222345567777777776555332
Q ss_pred -ccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCC
Q 038400 352 -PAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCP 430 (504)
Q Consensus 352 -~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 430 (504)
..-..+..|+.|+.++|..+.... .........+|+.+-+.+|..+.+..........+.|+.+++..|.
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~---------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEV---------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHH---------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 223457789999999987643221 1122334468999999999988877666656778899999998886
Q ss_pred CCCcc--CcCCCCCCCcceEecccCccCCcC-----ccCCCCCCCcCeEeEeCCCchhhh
Q 038400 431 NFMAL--PRSLKDLEALETLFILGCPKLSSL-----SEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 431 ~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
.+..- -.--.+++.|+.|.+++|..++.. ...-.+...|..+.+.+||.+++.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 55432 222357899999999999776654 233345678999999999987664
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=4.5e-07 Score=95.11 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=81.1
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcccchhhc
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLEHLFEEI 330 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 330 (504)
.++.|+|++|.. -..+|..+.++++|+.|++++|.+. ..|..++.+++|+.|++++|.....+|+.+
T Consensus 419 ~v~~L~L~~n~L------------~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGL------------RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCc------------cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 367778887641 1246667788888888888887765 455568888888888888887777788888
Q ss_pred CCCCcccEEeeccCCCccccCccCCCC-CCccEEEeccCCCc
Q 038400 331 DQLRVLRTLSIVCCPRLISLPPAIKYL-SSLETLFLYKCESL 371 (504)
Q Consensus 331 ~~l~~L~~L~l~~~~~l~~l~~~l~~l-~~L~~L~l~~~~~l 371 (504)
+++++|+.|++++|.....+|..++.+ .++..+++.+|..+
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 888888888888887667788776653 46677888877544
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=4.8e-08 Score=89.83 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=85.7
Q ss_pred hhhhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCcc----ccCc-------cccCCCCcCeeeccCC
Q 038400 194 SSLLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIE----VCPR-------KIGNLKHMRYLDLSGN 261 (504)
Q Consensus 194 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp~-------~~~~l~~L~~L~l~~~ 261 (504)
......+..+..+.++++.++ .........+.+.+.||..++++--.. .+|+ .+..+++|++||||+|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 444555566666777666554 223344445566666666666643211 2332 2334557777777766
Q ss_pred CCccccCcceeccccccCchhhhccccCCeeeeccccccccc--------------ccCCCCCCccEEeeeCCCC----c
Q 038400 262 SKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCGD----L 323 (504)
Q Consensus 262 ~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~----l 323 (504)
-.- ...+..+-.-+.++..|++|.+.+|.+.... .-+..-+.|+.+....|.- -
T Consensus 103 A~G--------~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 103 AFG--------PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccC--------ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 311 1112223334555667777777666543221 1234445666666655321 1
Q ss_pred ccchhhcCCCCcccEEeeccCCCc----cccCccCCCCCCccEEEeccCC
Q 038400 324 EHLFEEIDQLRVLRTLSIVCCPRL----ISLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 324 ~~~~~~~~~l~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~~~ 369 (504)
+.+...+...+.|+.+.+..|..- +.+...+.++++|+.|++.+|.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 122334455566666666655321 1223345566677777776653
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=3e-06 Score=81.87 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=31.4
Q ss_pred cccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCc
Q 038400 286 LTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPP 352 (504)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 352 (504)
+.++++|++++|.+...| . -..+|++|.+++|..+..+|..+ .++|++|++.+|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 344444444444333332 1 12246666666666665555443 24666666666655555554
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.6e-06 Score=91.04 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=66.7
Q ss_pred cCCeeeecccccc-cccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEec
Q 038400 288 SLRAFALTTKQKS-LQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLY 366 (504)
Q Consensus 288 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~ 366 (504)
.++.|+++++... ..+..++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677788877654 445678888999999998877667888888889999999999887667888888889999999988
Q ss_pred cCC
Q 038400 367 KCE 369 (504)
Q Consensus 367 ~~~ 369 (504)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 875
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=5.8e-06 Score=79.94 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=49.3
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccEEEeccCCCcc
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLETLFLYKCESLD 372 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~~~~l~ 372 (504)
+..+.++..|++++| .+..+|. -..+|+.|.+.+|..++.+|..+ .++|++|.+++|..+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc
Confidence 445688999999998 7888872 33579999999999999998755 4689999999996553
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=2e-06 Score=60.42 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=23.7
Q ss_pred CcccEEEeCCCCccccCc-cccCCCCcCeeeccCCC
Q 038400 228 QFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNS 262 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 262 (504)
++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN 36 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc
Confidence 356777777777776663 55667777777777664
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.9e-08 Score=85.86 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=33.1
Q ss_pred CeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc-ccCccccCCCCcCeeeccCCCCc
Q 038400 202 RVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE-VCPRKIGNLKHMRYLDLSGNSKI 264 (504)
Q Consensus 202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~ 264 (504)
.|+.++++... .........++.+..|+-|.++|..+. .+-..+.+=.+|+.|++++|..+
T Consensus 186 Rlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 34555555333 223334445556666666666666655 23344555566666777666533
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=7.6e-07 Score=82.10 Aligned_cols=246 Identities=16% Similarity=0.139 Sum_probs=148.7
Q ss_pred CCeEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccc-------hHHHHHHhcCCCcccEEEeCCCCcc-ccC
Q 038400 176 KRVRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKIS-------QSFVESCISKSQFLRVLNLSESAIE-VCP 244 (504)
Q Consensus 176 ~~~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~-~lp 244 (504)
+.+..+.++++.+..+ .+...+.+.+.||...++.-..+.. ...+...+...++|++|+|++|-+. ..+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 3567777877766544 2334566667888887764322211 2233445667779999999999876 222
Q ss_pred ----ccccCCCCcCeeeccCCCCccccCcceecccccc--CchhhhccccCCeeeeccccccccc-----ccCCCCCCcc
Q 038400 245 ----RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE--LPKDIRHLTSLRAFALTTKQKSLQE-----SGIRSLGSLR 313 (504)
Q Consensus 245 ----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~ 313 (504)
+-+.++..|+.|.+.+|. ++..-...-...+.+ .-+-+..-++|+.+...+|.....+ ..+...+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 345678899999999873 332111100000111 1122445578999999888765443 3466778999
Q ss_pred EEeeeCCCCc----ccchhhcCCCCcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCCCccccccccccCCCCC
Q 038400 314 CLTISGCGDL----EHLFEEIDQLRVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSN 385 (504)
Q Consensus 314 ~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 385 (504)
.+.+..+..- +.+...+..+++|+.|+|.+|.... .+...+..+++|+.|++.+|-.-+
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~------------- 255 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN------------- 255 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc-------------
Confidence 9999876533 2345677889999999999986322 344556678889999999884211
Q ss_pred CCCCCCCCccceEEEccCCCcccchhhhhcCCCCCccEEEeccCCCCCc----cCcCCCCCCCcceEecccCc
Q 038400 386 HDRKNTRPHLRRVVIGEITQLLELPQWLLQGSTDTLQNLLIIDCPNFMA----LPRSLKDLEALETLFILGCP 454 (504)
Q Consensus 386 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L~l~~c~ 454 (504)
.+...+...+ ....|+|+.|.+.+|..... +-..+...|.|+.|.+++|.
T Consensus 256 ------------------~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 ------------------EGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ------------------ccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1111222222 13357777777776643221 12234456778888887774
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.3e-06 Score=78.71 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=25.9
Q ss_pred CCCccEEEeccCCCCC-ccCcCCCCCCCcceEecccCccCCcCc--cCCCCCCCcCeEeEeCCCch
Q 038400 418 TDTLQNLLIIDCPNFM-ALPRSLKDLEALETLFILGCPKLSSLS--EDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 418 ~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l 480 (504)
||++..+.+..|+.-+ .-..+...+|.+-.|.+... ++.+.. +.+..+++|..|.+.+.|.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccc
Confidence 4555555555553111 11223344444444444432 233221 12344555555555555543
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=1.5e-05 Score=55.90 Aligned_cols=56 Identities=29% Similarity=0.342 Sum_probs=29.8
Q ss_pred CccEEeeeCCCCcccch-hhcCCCCcccEEeeccCCCccccC-ccCCCCCCccEEEeccC
Q 038400 311 SLRCLTISGCGDLEHLF-EEIDQLRVLRTLSIVCCPRLISLP-PAIKYLSSLETLFLYKC 368 (504)
Q Consensus 311 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~~ 368 (504)
+|++|++++| .+..+| ..+..+++|++|++++|. ++.++ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555554 344444 344556666666666543 33333 34556666666666655
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.7e-05 Score=51.03 Aligned_cols=35 Identities=34% Similarity=0.498 Sum_probs=27.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCC
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNS 262 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 262 (504)
++|++|++++|.++.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 46888888888888888878888888888888874
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=6.2e-06 Score=82.63 Aligned_cols=106 Identities=27% Similarity=0.329 Sum_probs=63.3
Q ss_pred hcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+..+..|..|++.++.+..+...+..+.+|++|++++|. +..+. ++..++.|+.|++++|.+....
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-------------I~~i~-~l~~l~~L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-------------ITKLE-GLSTLTLLKELNLSGNLISDIS 156 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-------------ccccc-chhhccchhhheeccCcchhcc
Confidence 556677777777777777665556667777777777664 22221 2445555777777777666553
Q ss_pred ccCCCCCCccEEeeeCCCCcccchhh-cCCCCcccEEeeccCC
Q 038400 304 SGIRSLGSLRCLTISGCGDLEHLFEE-IDQLRVLRTLSIVCCP 345 (504)
Q Consensus 304 ~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~ 345 (504)
.+..+++|+.+++++|... .+... +..+.+|+.+.+.+|.
T Consensus 157 -~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 157 -GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNS 197 (414)
T ss_pred -CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCc
Confidence 4555667777777665432 22221 3566666666666653
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.1e-05 Score=84.74 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=97.9
Q ss_pred CeEEEEEEcCCCCccchhh-hhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCe
Q 038400 177 RVRHLSFAAANASRKDFSS-LLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRY 255 (504)
Q Consensus 177 ~~~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~ 255 (504)
+++++++.+......+|+. ....+|.|++|.+.+... ....+.....++++|+.||+++++++.+ ..+++|+||+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 5788888776554555543 445689999999986543 3333566788999999999999999877 78899999999
Q ss_pred eeccCCCCccccCcceecccccc--CchhhhccccCCeeeeccccccccc-------ccCCCCCCccEEeeeCCCCcccc
Q 038400 256 LDLSGNSKIKKLPKSIYCLELEE--LPKDIRHLTSLRAFALTTKQKSLQE-------SGIRSLGSLRCLTISGCGDLEHL 326 (504)
Q Consensus 256 L~l~~~~~~~~lp~~~~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~l~~~ 326 (504)
|.+.+=. ++. --..+.+|++|+.||+|.......+ ..-..|++|+.||.++...-..+
T Consensus 200 L~mrnLe-------------~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLE-------------FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCC-------------CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9888532 221 1135678899999999854432221 11234777888887764433332
Q ss_pred hh-hcCCCCcccEEeecc
Q 038400 327 FE-EIDQLRVLRTLSIVC 343 (504)
Q Consensus 327 ~~-~~~~l~~L~~L~l~~ 343 (504)
.+ .+...++|+.+.+.+
T Consensus 267 le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAALD 284 (699)
T ss_pred HHHHHHhCccHhhhhhhh
Confidence 22 223345555554443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=3.2e-06 Score=84.66 Aligned_cols=131 Identities=24% Similarity=0.343 Sum_probs=102.3
Q ss_pred CCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccccc
Q 038400 226 KSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESG 305 (504)
Q Consensus 226 ~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 305 (504)
.+..++.++++.+.+...-..+..+.+|++|++.+|. ++.+...+..+++|++|++++|.+.... .
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-------------i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-------------IEKIENLLSSLVNLQVLDLSFNKITKLE-G 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-------------hhhcccchhhhhcchheecccccccccc-c
Confidence 4566667778888887655668899999999999886 6666555788999999999999988775 5
Q ss_pred CCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCcc-CCCCCCccEEEeccCCCccc
Q 038400 306 IRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPA-IKYLSSLETLFLYKCESLDL 373 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~~~~l~~ 373 (504)
+..++.|+.|++++|. +..+ ..+..+++|+.+++++|. +..+... ...+.+|+.+.+.++....+
T Consensus 136 l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNL-ISDI-SGLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhhccchhhheeccCc-chhc-cCCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 8888999999999964 4433 466779999999999985 4444442 47788999999998876544
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=2.4e-05 Score=82.17 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=93.3
Q ss_pred CCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCcc--ccCccccCCCCcCeeeccCCCCccccCcceecccccc
Q 038400 201 GRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIE--VCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEE 278 (504)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~ 278 (504)
.+|+.|++++.. .....++...-..++.|+.|.+.|-.+. .+-....+++||+.||+|++. +..
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-------------I~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-------------ISN 187 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-------------ccC
Confidence 578888887643 2455666666778899999999988765 344556788999999999875 555
Q ss_pred CchhhhccccCCeeeeccccccc--ccccCCCCCCccEEeeeCCCCccc------chhhcCCCCcccEEeeccCC
Q 038400 279 LPKDIRHLTSLRAFALTTKQKSL--QESGIRSLGSLRCLTISGCGDLEH------LFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 279 lp~~i~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~------~~~~~~~l~~L~~L~l~~~~ 345 (504)
+ .++++|++|+.|.+.+-.+.. ....+.+|++|+.||+|.-..... ..+.-..||+|+.|+.++..
T Consensus 188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 5 688999999999887644332 224678899999999987433221 11223458999999988764
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=9.7e-05 Score=47.52 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=20.1
Q ss_pred CcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccc
Q 038400 252 HMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKS 300 (504)
Q Consensus 252 ~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 300 (504)
+|++|++++|. +..+|..+++|++|++|++++|.+.
T Consensus 2 ~L~~L~l~~N~-------------i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQ-------------ITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS--------------SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCC-------------CcccCchHhCCCCCCEEEecCCCCC
Confidence 56666666654 5555555566666666666655544
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=5.1e-06 Score=83.77 Aligned_cols=142 Identities=22% Similarity=0.187 Sum_probs=92.2
Q ss_pred HhcCCCcccEEEeCCCCccccCccccCCC-CcCeeeccCC---------CCccccCc----------ceeccccccCchh
Q 038400 223 CISKSQFLRVLNLSESAIEVCPRKIGNLK-HMRYLDLSGN---------SKIKKLPK----------SIYCLELEELPKD 282 (504)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~lp~~~~~l~-~L~~L~l~~~---------~~~~~lp~----------~~~~~~l~~lp~~ 282 (504)
.+-.+..||+|.++++.+... ..+..+. .|+.|.-.+. ...+++-. ++.++.+..+-..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHH
Confidence 355689999999999988742 1222221 1333322210 00111111 1225566677778
Q ss_pred hhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcccchhhcCCCCcccEEeeccCCCccccCccCCCCCCccE
Q 038400 283 IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLEHLFEEIDQLRVLRTLSIVCCPRLISLPPAIKYLSSLET 362 (504)
Q Consensus 283 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 362 (504)
+.-++.|++|++++|+..... .+..|+.|++||++.| .+..+|.--..-.+|..|.+++|. ++.+-. +.+|.+|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG-IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeecccH-HHhhhh-HHhhhhhhc
Confidence 888899999999999887765 7889999999999984 466665322122348888888874 555543 677888999
Q ss_pred EEeccCC
Q 038400 363 LFLYKCE 369 (504)
Q Consensus 363 L~l~~~~ 369 (504)
|+++.|-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 9988874
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=2.8e-06 Score=85.55 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=9.7
Q ss_pred CCeEEEEEEcCCCC
Q 038400 176 KRVRHLSFAAANAS 189 (504)
Q Consensus 176 ~~~~~l~l~~~~~~ 189 (504)
+.+|++.+.+++++
T Consensus 109 ~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 109 RSLRVLELRGCDLS 122 (1096)
T ss_pred cceeeEEecCcchh
Confidence 45777877777664
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=4.1e-05 Score=78.63 Aligned_cols=61 Identities=23% Similarity=0.460 Sum_probs=32.5
Q ss_pred EEeccCCCC-CccCcCCCCCCCcceEecccCccCCcCccC-CC-CCCCcCeEeEeCCCchhhhc
Q 038400 424 LLIIDCPNF-MALPRSLKDLEALETLFILGCPKLSSLSED-MH-HVTTLKSLTIGGCPALSERC 484 (504)
Q Consensus 424 L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~-~l~~L~~L~l~~c~~l~~~~ 484 (504)
+.+.+|+.+ ..+........+|+.|.+..|...+.-.-. .. .+..++.+++.+|+.+....
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 445555555 222222233334778888877654432111 11 15667778888887766543
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00042 Score=63.04 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=31.7
Q ss_pred hcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccc-cCCCCcCeeeccCC
Q 038400 197 LSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKI-GNLKHMRYLDLSGN 261 (504)
Q Consensus 197 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~~~ 261 (504)
-..+..++.+++.++.+. ...-....+.+++.|++|+++.|.+...-..+ ..+.+|+.|-|.+.
T Consensus 67 ~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 344555666666554432 12223344556666666666666554221122 24456666666554
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=3.1e-05 Score=79.50 Aligned_cols=228 Identities=22% Similarity=0.285 Sum_probs=109.5
Q ss_pred hHHHHHHhcCCCcccEEEeCCCC-ccc--cCccccCCCCcCeeeccCC-CCccccCcceeccccccCchhhhccccCCee
Q 038400 217 QSFVESCISKSQFLRVLNLSESA-IEV--CPRKIGNLKHMRYLDLSGN-SKIKKLPKSIYCLELEELPKDIRHLTSLRAF 292 (504)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~-~~~--lp~~~~~l~~L~~L~l~~~-~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L 292 (504)
..........++.|+.|.+.++. +.. +-.....+++|+.|++++| ..+...+ .........+.+|+.|
T Consensus 177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~~~~~~L~~l 248 (482)
T KOG1947|consen 177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP--------LLLLLLLSICRKLKSL 248 (482)
T ss_pred HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch--------hHhhhhhhhcCCcCcc
Confidence 33344444456777777777664 332 3344556777777777763 1111100 0011123344666777
Q ss_pred eeccccc-ccc--cccCCCCCCccEEeeeCCCCcc--cchhhcCCCCcccEEeeccCCCccc--cCccCCCCCCccEEEe
Q 038400 293 ALTTKQK-SLQ--ESGIRSLGSLRCLTISGCGDLE--HLFEEIDQLRVLRTLSIVCCPRLIS--LPPAIKYLSSLETLFL 365 (504)
Q Consensus 293 ~l~~~~~-~~~--~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L~l 365 (504)
+++.+.. ... ......+++|++|.+.+|..++ .+......+++|++|++++|..++. +.....++++|+.|.+
T Consensus 249 ~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 249 DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 7765542 111 1111236677777766666432 2223334566677777777665421 2223334555555444
Q ss_pred ccCCCccccccccccCCCCCCCCCCCCCccceEEEccCCCccc-chhhhhcCCCCCccEEEeccCCCCCccCcCCCCCCC
Q 038400 366 YKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVVIGEITQLLE-LPQWLLQGSTDTLQNLLIIDCPNFMALPRSLKDLEA 444 (504)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 444 (504)
..+.. .+.++.+.+.++..... .........+++++.+.+..|. .....
T Consensus 329 ~~~~~---------------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~-------- 378 (482)
T KOG1947|consen 329 LSLNG---------------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG-------- 378 (482)
T ss_pred hhcCC---------------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc--------
Confidence 33321 12233333333322220 1111112445556666555553 22111
Q ss_pred cceEecccCccC-CcCccCCCCCCCcCeEeEeCCCchhhh
Q 038400 445 LETLFILGCPKL-SSLSEDMHHVTTLKSLTIGGCPALSER 483 (504)
Q Consensus 445 L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~ 483 (504)
..+.+.+|+.+ ..+.........++.|++..|...+..
T Consensus 379 -~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 379 -LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred -hHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 14556677766 333333334444899999999876653
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=3.8e-05 Score=61.50 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=60.3
Q ss_pred hcCCCcccEEEeCCCCccccCcccc-CCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc
Q 038400 224 ISKSQFLRVLNLSESAIEVCPRKIG-NLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ 302 (504)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 302 (504)
+.+..+|...+|++|.+..+|+.+. ..+.++.|++++|. +.++|.++..++.|+.|+++.|.+...
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-------------isdvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-------------ISDVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-------------hhhchHHHhhhHHhhhcccccCccccc
Confidence 4455677777788888777776554 34467777777765 777777777888888888887777777
Q ss_pred cccCCCCCCccEEeeeCC
Q 038400 303 ESGIRSLGSLRCLTISGC 320 (504)
Q Consensus 303 ~~~~~~l~~L~~L~l~~~ 320 (504)
+..+..|.+|-.|+.-++
T Consensus 116 p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hHHHHHHHhHHHhcCCCC
Confidence 766767777777776654
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=0.00013 Score=58.61 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=75.4
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceecc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCL 274 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~ 274 (504)
..+....+|...+++++.++ .+++.+..+++.++.|++++|.+..+|..+..++.|+.|+++.|.
T Consensus 47 y~l~~~~el~~i~ls~N~fk---~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~------------ 111 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFK---KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP------------ 111 (177)
T ss_pred HHHhCCceEEEEecccchhh---hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc------------
Confidence 33455677888888877654 555666678889999999999999999999999999999999886
Q ss_pred ccccCchhhhccccCCeeeeccccccccc
Q 038400 275 ELEELPKDIRHLTSLRAFALTTKQKSLQE 303 (504)
Q Consensus 275 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~ 303 (504)
+...|+.+..|.+|-.|+..+|.....+
T Consensus 112 -l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 112 -LNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred -cccchHHHHHHHhHHHhcCCCCccccCc
Confidence 7778888888999999988877655443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.68 E-value=0.003 Score=54.45 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=47.4
Q ss_pred hccccCCeeeecccccccccccCCC-CCCccEEeeeCCCCcccch--hhcCCCCcccEEeeccCCCccc---cCccCCCC
Q 038400 284 RHLTSLRAFALTTKQKSLQESGIRS-LGSLRCLTISGCGDLEHLF--EEIDQLRVLRTLSIVCCPRLIS---LPPAIKYL 357 (504)
Q Consensus 284 ~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~---l~~~l~~l 357 (504)
..++.|.+|.+.+|.+..+.+.+.. +++|+.|.+.+|+ +.++- ..+..+++|++|.+-+|+.... -.-.+.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3556666666666666555555443 4557777776643 32221 2345567777777777652211 01235567
Q ss_pred CCccEEEeccC
Q 038400 358 SSLETLFLYKC 368 (504)
Q Consensus 358 ~~L~~L~l~~~ 368 (504)
++|+.|+..+-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 77777777654
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.57 E-value=0.00036 Score=62.60 Aligned_cols=242 Identities=17% Similarity=0.043 Sum_probs=116.9
Q ss_pred hhcCCCCeeEEeeecCCcc-cchHHHHHHhcCCCcccEEEeCCCCcc----ccC-------ccccCCCCcCeeeccCCCC
Q 038400 196 LLSDLGRVRTIVFSTDDEK-ISQSFVESCISKSQFLRVLNLSESAIE----VCP-------RKIGNLKHMRYLDLSGNSK 263 (504)
Q Consensus 196 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~----~lp-------~~~~~l~~L~~L~l~~~~~ 263 (504)
.+..+..+..++++++.++ .....+...+.+-++|++.++++-... .+| +.+-++++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3444566667777766554 223344455666667777766653221 222 2345677777777777643
Q ss_pred ccccCcceeccccccCchhhhccccCCeeeeccccccccc--------------ccCCCCCCccEEeeeCCCCcccch--
Q 038400 264 IKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE--------------SGIRSLGSLRCLTISGCGDLEHLF-- 327 (504)
Q Consensus 264 ~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~l~~~~-- 327 (504)
-.+.| ..|-.-|.+-+.|+||.+++|...... .-+.+-+.|++.....| .+...+
T Consensus 105 g~~~~--------e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~ 175 (388)
T COG5238 105 GSEFP--------EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKE 175 (388)
T ss_pred Ccccc--------hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHH
Confidence 22222 222334556677777777766543221 11334466776666553 233222
Q ss_pred ---hhcCCCCcccEEeeccCCCcc----cc-CccCCCCCCccEEEeccCCCccccccccccCCCCCCCCCCCCCccceEE
Q 038400 328 ---EEIDQLRVLRTLSIVCCPRLI----SL-PPAIKYLSSLETLFLYKCESLDLNINMEMEGEGSNHDRKNTRPHLRRVV 399 (504)
Q Consensus 328 ---~~~~~l~~L~~L~l~~~~~l~----~l-~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 399 (504)
..+..-.+|+.+.+..|..-. .+ -..+.++.+|+.|++.+|.....- ..........-+.|+.|.
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g-------S~~La~al~~W~~lrEL~ 248 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG-------SRYLADALCEWNLLRELR 248 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh-------HHHHHHHhcccchhhhcc
Confidence 122333567777776654211 00 112345677777777776421100 000000001111356666
Q ss_pred EccCC----CcccchhhhhcCCCCCccEEEeccCCCCCc------cCcC-CCCCCCcceEecccC
Q 038400 400 IGEIT----QLLELPQWLLQGSTDTLQNLLIIDCPNFMA------LPRS-LKDLEALETLFILGC 453 (504)
Q Consensus 400 l~~~~----~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~------l~~~-~~~l~~L~~L~l~~c 453 (504)
+.+|- +...+-..+.....|+|..|...++..-.. ++.. -..+|-|..|.+.++
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 66652 222222222223456666666555432111 1211 145677777777766
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0019 Score=57.92 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=52.7
Q ss_pred CcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccc--ccc
Q 038400 228 QFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQ--ESG 305 (504)
Q Consensus 228 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~~~ 305 (504)
..|..|++.+..++++ ..+..|++|++|+++.|+.-. ...++.-..++++|++|++++|.+..+ ...
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~----------~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRV----------SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccc----------cccceehhhhCCceeEEeecCCccccccccch
Confidence 3444444555444432 234456677777777663111 223333344557777777776665432 123
Q ss_pred CCCCCCccEEeeeCCCCcccc---hhhcCCCCcccEEeeccC
Q 038400 306 IRSLGSLRCLTISGCGDLEHL---FEEIDQLRVLRTLSIVCC 344 (504)
Q Consensus 306 ~~~l~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~ 344 (504)
+..+.+|..|++++|.....- -..+.-+++|++|+-.+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 455566666777666433200 012333455666555443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.98 E-value=0.013 Score=50.60 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=18.0
Q ss_pred hcCCCCcccEEeeccCCCccccCccCC-CCCCccEEEeccCC
Q 038400 329 EIDQLRVLRTLSIVCCPRLISLPPAIK-YLSSLETLFLYKCE 369 (504)
Q Consensus 329 ~~~~l~~L~~L~l~~~~~l~~l~~~l~-~l~~L~~L~l~~~~ 369 (504)
.+..++.|.+|.+..|. ++.+.+.+. .+++|..|.+.+|+
T Consensus 59 ~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc
Confidence 34445555555555443 333322222 23445555555543
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0055 Score=32.68 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=12.0
Q ss_pred ccEEEeCCCCccccCccccC
Q 038400 230 LRVLNLSESAIEVCPRKIGN 249 (504)
Q Consensus 230 L~~L~l~~~~~~~lp~~~~~ 249 (504)
|++|++++|.++.+|+.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 56666666666666655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.00089 Score=60.40 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCC
Q 038400 200 LGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNS 262 (504)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 262 (504)
+.+++.|++-+++.. + -....+|+.|+||.|+-|.|+++ +.+..+.+|+.|.|+.|.
T Consensus 18 l~~vkKLNcwg~~L~--D---Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD--D---ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC 74 (388)
T ss_pred HHHhhhhcccCCCcc--H---HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc
Confidence 445666666655533 2 23455788888888888888766 446677778877777664
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.28 E-value=0.029 Score=50.81 Aligned_cols=191 Identities=16% Similarity=0.162 Sum_probs=99.0
Q ss_pred eEEEEEEcCCCCcc---chhhhhcCCCCeeEEeeecCCcccc-------hHHHHHHhcCCCcccEEEeCCCCcc-ccCc-
Q 038400 178 VRHLSFAAANASRK---DFSSLLSDLGRVRTIVFSTDDEKIS-------QSFVESCISKSQFLRVLNLSESAIE-VCPR- 245 (504)
Q Consensus 178 ~~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~- 245 (504)
+..+.++++.+.++ .+...+.+-++|+...++.-..+.. .......+-++++|+..+|++|.|. ..|+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 45566666655443 2233444556666666653322211 1223345667888888888888776 4444
Q ss_pred ---cccCCCCcCeeeccCCCCccccCcceeccccccC--chhhhccccCCeeeeccccccccc-----ccCCCCCCccEE
Q 038400 246 ---KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEEL--PKDIRHLTSLRAFALTTKQKSLQE-----SGIRSLGSLRCL 315 (504)
Q Consensus 246 ---~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L 315 (504)
-+.+-.+|..|.+++|. ++.+-..=....+.++ -+-..+-+.|+...+..|....-+ ..+..-.+|+.+
T Consensus 112 L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 34566778888888763 3322110000000000 112234466777777665543222 123333567777
Q ss_pred eeeCCCCccc-----chhhcCCCCcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCC
Q 038400 316 TISGCGDLEH-----LFEEIDQLRVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCE 369 (504)
Q Consensus 316 ~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~ 369 (504)
.+..|..-.+ +...+..+++|+.|++.+|.... .+...+...+.|+.|.+.+|-
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 7766543222 12234456778888888775321 223344555667778777773
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.42 E-value=0.025 Score=50.96 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=42.8
Q ss_pred cccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccc--cc-cccccCCCCCCccEEeeeCCCC
Q 038400 246 KIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQ--KS-LQESGIRSLGSLRCLTISGCGD 322 (504)
Q Consensus 246 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~--~~-~~~~~~~~l~~L~~L~l~~~~~ 322 (504)
....+.+|+.|++.++. .+.+..+| .|++|+.|.++.|. .. ..+.-+..+++|++|++++|+.
T Consensus 38 l~d~~~~le~ls~~n~g----------ltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVG----------LTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccccccchhhhhhhccc----------eeecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33445566666666543 11233333 56677777777552 21 1222334457777777776542
Q ss_pred c--ccchhhcCCCCcccEEeeccCC
Q 038400 323 L--EHLFEEIDQLRVLRTLSIVCCP 345 (504)
Q Consensus 323 l--~~~~~~~~~l~~L~~L~l~~~~ 345 (504)
- ..+ ..+..+.+|..|++.+|.
T Consensus 104 ~~lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 104 KDLSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred cccccc-chhhhhcchhhhhcccCC
Confidence 1 111 223445566666666664
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.96 E-value=0.033 Score=29.61 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=4.0
Q ss_pred ccEEeeeCC
Q 038400 312 LRCLTISGC 320 (504)
Q Consensus 312 L~~L~l~~~ 320 (504)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.047 Score=26.92 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=6.0
Q ss_pred cccEEEeCCCCcccc
Q 038400 229 FLRVLNLSESAIEVC 243 (504)
Q Consensus 229 ~L~~L~l~~~~~~~l 243 (504)
+|++|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.018 Score=49.76 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=18.9
Q ss_pred CCCCccEEEeccCCCCCcc-CcCCCCCCCcceEecccCc
Q 038400 417 STDTLQNLLIIDCPNFMAL-PRSLKDLEALETLFILGCP 454 (504)
Q Consensus 417 ~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~ 454 (504)
..++|+.|+|++|+.+++- -.++..+++|+.|.|.+.+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4455555555555555432 2234455555555555443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.68 E-value=0.47 Score=38.51 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=12.0
Q ss_pred cccCCeeeecccccccccccCCCCCCccEEeee
Q 038400 286 LTSLRAFALTTKQKSLQESGIRSLGSLRCLTIS 318 (504)
Q Consensus 286 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 318 (504)
+++|+.+.+.++........+..+++|+.+.+.
T Consensus 57 ~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 57 CKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccccccccccccccccccccccccC
Confidence 334444444332222222334445555555553
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.0088 Score=54.20 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=63.8
Q ss_pred cCCCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeeccccccccc-
Q 038400 225 SKSQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQE- 303 (504)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~- 303 (504)
+.+.+.+.|+.-||.+..+ +-..+++.|++|.|+-|+ +..|- .+..+++|++|+++.|.+....
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-------------IssL~-pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-------------ISSLA-PLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-------------cccch-hHHHHHHHHHHHHHhcccccHHH
Confidence 3456677788888887754 345678888888888664 33332 3567788888888877665442
Q ss_pred -ccCCCCCCccEEeeeCCCCcccch-----hhcCCCCcccEEe
Q 038400 304 -SGIRSLGSLRCLTISGCGDLEHLF-----EEIDQLRVLRTLS 340 (504)
Q Consensus 304 -~~~~~l~~L~~L~l~~~~~l~~~~-----~~~~~l~~L~~L~ 340 (504)
..+.++++|+.|.|..|.-...-+ ..+.-|++|+.|+
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 345677777777777655443332 1334566666664
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.88 E-value=0.43 Score=38.76 Aligned_cols=105 Identities=15% Similarity=0.303 Sum_probs=54.6
Q ss_pred hhhcCCCCeeEEeeecCCcccchHHHHHHhcCCCcccEEEeCCCCccccCc-cccCCCCcCeeeccCCCCccccCcceec
Q 038400 195 SLLSDLGRVRTIVFSTDDEKISQSFVESCISKSQFLRVLNLSESAIEVCPR-KIGNLKHMRYLDLSGNSKIKKLPKSIYC 273 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 273 (504)
..+.++.+|+.+.+.. ... .+....|..+..|+.+.+.++ +..++. .+.++.+|+.+.+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~---~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~------------ 68 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK---KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN------------ 68 (129)
T ss_dssp TTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST------------
T ss_pred HHHhCCCCCCEEEECC-Cee---EeChhhccccccccccccccc-ccccceeeeeccccccccccccc------------
Confidence 4566777888888763 222 233445777878888888775 665553 5667778888888642
Q ss_pred cccccCchh-hhccccCCeeeecccccccccccCCCCCCccEEeeeC
Q 038400 274 LELEELPKD-IRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISG 319 (504)
Q Consensus 274 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 319 (504)
+..++.. +..+++|+.+.+..+........+.+. +|+.+.+..
T Consensus 69 --~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 69 --LKSIGDNAFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp --T-EE-TTTTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred --ccccccccccccccccccccCccccEEchhhhcCC-CceEEEECC
Confidence 3333332 445788888888655333444456665 777776643
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.82 E-value=0.015 Score=51.27 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=37.8
Q ss_pred CCcccEEEeCCCCccccCccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccC
Q 038400 227 SQFLRVLNLSESAIEVCPRKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGI 306 (504)
Q Consensus 227 ~~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 306 (504)
+...++||++.+.+..+-..+.-+..|..|+++.+. +.-+|+..+.+..++++++..|.....|..+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-------------~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-------------IKFLPKDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-------------HhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence 344445555544444444444444444445554433 4444444445555555555444444444444
Q ss_pred CCCCCccEEeeeC
Q 038400 307 RSLGSLRCLTISG 319 (504)
Q Consensus 307 ~~l~~L~~L~l~~ 319 (504)
++++.++.++..+
T Consensus 108 ~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 108 KKEPHPKKNEQKK 120 (326)
T ss_pred cccCCcchhhhcc
Confidence 4555555554444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.49 E-value=0.0082 Score=52.93 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=72.6
Q ss_pred ccccCCCCcCeeeccCCCCccccCcceeccccccCchhhhccccCCeeeecccccccccccCCCCCCccEEeeeCCCCcc
Q 038400 245 RKIGNLKHMRYLDLSGNSKIKKLPKSIYCLELEELPKDIRHLTSLRAFALTTKQKSLQESGIRSLGSLRCLTISGCGDLE 324 (504)
Q Consensus 245 ~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 324 (504)
..+.....-+.||++.|+ +..+...+..++.|..|+++.+.+...|.+++++..+..++... ++.+
T Consensus 36 ~ei~~~kr~tvld~~s~r-------------~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~ 101 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNR-------------LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHS 101 (326)
T ss_pred hhhhccceeeeehhhhhH-------------HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchh
Confidence 356677788889998775 66777778888999999999999988888888888888888766 4677
Q ss_pred cchhhcCCCCcccEEeeccCCC
Q 038400 325 HLFEEIDQLRVLRTLSIVCCPR 346 (504)
Q Consensus 325 ~~~~~~~~l~~L~~L~l~~~~~ 346 (504)
..|.+.+..++++++++.++..
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hCCccccccCCcchhhhccCcc
Confidence 7899999999999999888763
No 78
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.04 E-value=3.5 Score=46.13 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCC-hh--hhhhhhh-ccCCchhHHHhh-hhCCChhhHhhhhhhcccCCCCccC
Q 038400 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTD-EH--DWEYLEQ-KESGILPILRLS-YYQLPPHLKQCVAYCSIFPKDYPFD 91 (504)
Q Consensus 17 ~i~~~iv~~c~GlPLal~~ig~~L~~~~~-~~--~W~~~~~-~~~~i~~~L~~s-y~~L~~~~k~~fl~~a~fp~~~~i~ 91 (504)
+...++.+.|+|.|+++..++..+..... .. .|. ... ....+...+.-. ++.||++.+..++..|+++ .++
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~ 281 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSLHDSARR-LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMN 281 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHh-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCC
Confidence 34578999999999999999988864332 11 111 111 123455554444 8999999999999999986 334
Q ss_pred hHHHHHHHHHccCcccCCCCchHHHHHHHHHHHHHHCcceeeecccccCCcEeEEEeChhHHHHHHHHh
Q 038400 92 SFSLVQFWMAHGLLQSHNKNEELEDIGMRYLKELLSRSFFHDLTFGMLGMGMFFFKMHDLMHDLALLVA 160 (504)
Q Consensus 92 ~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~mhdl~~~~~~~~~ 160 (504)
. .+..... .. +.+...+.+|.+.+++....+ +....+..|++++++.....
T Consensus 282 ~-~l~~~l~-----~~--------~~~~~~L~~l~~~~l~~~~~~----~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 282 D-ALIVRVT-----GE--------ENGQMRLEELERQGLFIQRMD----DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred H-HHHHHHc-----CC--------CcHHHHHHHHHHCCCeeEeec----CCCCEEehhHHHHHHHHHHH
Confidence 2 2333221 11 113567889999998653221 11236778999999986543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.093 Score=45.53 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=47.8
Q ss_pred CCCCCccEEEeccCCCCCcc--CcCCCCCCCcceEecccCccCCcCc-cCCCCCCCcCeEeEeCCCch
Q 038400 416 GSTDTLQNLLIIDCPNFMAL--PRSLKDLEALETLFILGCPKLSSLS-EDMHHVTTLKSLTIGGCPAL 480 (504)
Q Consensus 416 ~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l 480 (504)
..++.++.|.+.+|..+... ...-+-.++|+.|+|++|+.+++-. ..+..+++|+.|.+.+.|..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 45677888888888877643 1112356899999999999998743 23567899999999988753
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.33 E-value=0.7 Score=25.50 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=8.3
Q ss_pred cccEEEeCCCCccccCc
Q 038400 229 FLRVLNLSESAIEVCPR 245 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~ 245 (504)
+|++|+|.+|.+..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44455555555544443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.33 E-value=0.7 Score=25.50 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=8.3
Q ss_pred cccEEEeCCCCccccCc
Q 038400 229 FLRVLNLSESAIEVCPR 245 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~ 245 (504)
+|++|+|.+|.+..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44455555555544443
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.22 E-value=0.6 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.741 Sum_probs=12.9
Q ss_pred CCCcCeEeEeCCCchhhh
Q 038400 466 VTTLKSLTIGGCPALSER 483 (504)
Q Consensus 466 l~~L~~L~l~~c~~l~~~ 483 (504)
+++|++|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467778888888777653
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.14 E-value=3.4 Score=22.90 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=10.4
Q ss_pred cccEEEeCCCCccccCc
Q 038400 229 FLRVLNLSESAIEVCPR 245 (504)
Q Consensus 229 ~L~~L~l~~~~~~~lp~ 245 (504)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=63.12 E-value=0.24 Score=50.27 Aligned_cols=168 Identities=20% Similarity=0.172 Sum_probs=80.4
Q ss_pred hhhcCCCCeeEEeeecCCcccc-hHHHHHHhcCC-CcccEEEeCCCCcc-----ccCccccCCCCcCeeeccCCCCcccc
Q 038400 195 SLLSDLGRVRTIVFSTDDEKIS-QSFVESCISKS-QFLRVLNLSESAIE-----VCPRKIGNLKHMRYLDLSGNSKIKKL 267 (504)
Q Consensus 195 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~l 267 (504)
..+.....|..|+++++..+.. .......+... ..|++|++..|.++ .+.+.+....+++.++++.|....
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~-- 186 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE-- 186 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch--
Confidence 3344555566666665554411 11122223332 45566666666554 334445556667777776654220
Q ss_pred CcceeccccccCchh----hhccccCCeeeecccccccc-----cccCCCCCC-ccEEeeeCCCCcc----cchhhcCCC
Q 038400 268 PKSIYCLELEELPKD----IRHLTSLRAFALTTKQKSLQ-----ESGIRSLGS-LRCLTISGCGDLE----HLFEEIDQL 333 (504)
Q Consensus 268 p~~~~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~-L~~L~l~~~~~l~----~~~~~~~~l 333 (504)
. ....++.. +....++++|.+.++..... ...+...+. +..|++..|..-. .+.+.+..+
T Consensus 187 -~-----g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~ 260 (478)
T KOG4308|consen 187 -L-----GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVL 260 (478)
T ss_pred -h-----hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhccc
Confidence 0 01111222 22355666666665544321 112333333 4456665543221 122334444
Q ss_pred -CcccEEeeccCCCcc----ccCccCCCCCCccEEEeccCCC
Q 038400 334 -RVLRTLSIVCCPRLI----SLPPAIKYLSSLETLFLYKCES 370 (504)
Q Consensus 334 -~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~~~~ 370 (504)
..++.+++..|+... .+...+..++.++.|.++.++.
T Consensus 261 ~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 261 SETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred chhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 566777777665332 3344455566777777776653
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.22 E-value=7.2 Score=20.82 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=4.6
Q ss_pred cccEEEeCCCCc
Q 038400 229 FLRVLNLSESAI 240 (504)
Q Consensus 229 ~L~~L~l~~~~~ 240 (504)
+|+.|+|++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.09 E-value=12 Score=20.75 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=7.8
Q ss_pred CcccEEEeCCCCcc
Q 038400 228 QFLRVLNLSESAIE 241 (504)
Q Consensus 228 ~~L~~L~l~~~~~~ 241 (504)
.+|++|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34556666666554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.62 E-value=16 Score=20.47 Aligned_cols=13 Identities=38% Similarity=0.508 Sum_probs=7.3
Q ss_pred cccEEEeCCCCcc
Q 038400 229 FLRVLNLSESAIE 241 (504)
Q Consensus 229 ~L~~L~l~~~~~~ 241 (504)
.|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666665553
No 88
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=37.33 E-value=68 Score=22.24 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHhhhcCCCC
Q 038400 14 NLIKIGEEIVKKCGGIPLAVRALGSLLYCSTD 45 (504)
Q Consensus 14 ~~~~i~~~iv~~c~GlPLal~~ig~~L~~~~~ 45 (504)
.+..+--.|++.|+|++=-+.++-+.|+.+.|
T Consensus 2 ~~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 2 RFDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 46677888999999999999999999996654
No 89
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=29.22 E-value=91 Score=30.06 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHhhhcCCCChhhhhhhh-------hccCCchhHHHhhhhCCChhhHhhhh-hhcccCCCC
Q 038400 17 KIGEEIVKKCGGIPLAVRALGSLLYCSTDEHDWEYLE-------QKESGILPILRLSYYQLPPHLKQCVA-YCSIFPKDY 88 (504)
Q Consensus 17 ~i~~~iv~~c~GlPLal~~ig~~L~~~~~~~~W~~~~-------~~~~~i~~~L~~sy~~L~~~~k~~fl-~~a~fp~~~ 88 (504)
+....|++.|+|.|-.+..+...+. .|.... ..-....+.+...|..|++..+.-+. ....|..+
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~- 275 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG- 275 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-
Confidence 4578899999999965555554332 122111 01122345567778889888777664 45566554
Q ss_pred ccChHHHHHHHHHccCcccCCCCchHHHHHHHHHH-HHHHCcceeee
Q 038400 89 PFDSFSLVQFWMAHGLLQSHNKNEELEDIGMRYLK-ELLSRSFFHDL 134 (504)
Q Consensus 89 ~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~l~~~~ 134 (504)
.+....+-..+ | .. .+.++..++ .|++.++++..
T Consensus 276 ~~~~~~~a~~l---g---~~------~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 276 PVGLDTLAAAL---G---EE------RDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred ceeHHHHHHHH---C---CC------cchHHHHhhHHHHHcCCcccC
Confidence 45554432222 1 11 112333344 78888888643
Done!